| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485804
Identifier: 103485804
GI number: 103485804
Start: 313173
End: 314231
Strand: Reverse
Name: 103485804
Synonym: Sala_0309
Alternate gene names: NA
Gene position: 314231-313173 (Counterclockwise)
Preceding gene: 103485805
Following gene: 103485803
Centisome position: 9.39
GC content: 72.14
Gene sequence:
>1059_bases ATGACGGGGCTTCGCGCACCCCTGCGGCTGGCTTTGCTGCTCATGCTGCTCTGCGCCGCCCCGACGGTGTGGGCCGGGCC GTTCGTCGGACAACGCCTGATGACCGCCGACCACCCGCCGGCCGCCGCGCGCAACGCCGACGGCAGTACGCGGCTGCGCG TCACCGTCTGGTATCCCGCAGCAGGCGATGACGGCGCCGGCACTGCGCCGCCCGTCGTGCGCGACGCCCCCCCTGCCGCC GGGGGGCGCCGCGGCGTCATCCTCCTCTCGCACGGCTTCGGCGGCGCGGCGGTGGCGATGGGCTGGTTCGCCAGGACAAT GGCCGAGGCGGGCTATGTCGTGATCGGCGTCGACCATCCGGGCAACAATGGGCTGGAGGCGATGACCAAAGCAGGCGCTG CGCTCTTCTTCGAACGCCCCGGCGATCTGCGGCGGGCCTTTGACCATGTCGCCGCCGACCCCGTGCTTGGCCCGATGCTC GACCCCGGCCGCGTCGCTGCCGCGGGTTTTTCGGCGGGCGGTTTCACTGCGCTCGCGCTGGGCGGCGCGCGCATGGAGAC AGGACTGCTGCGCCGTTTCTGCACCGCCAACCCCGATGATGGCGTCTGCCGCCCGCAGCTCGAGTTTGCGGTCCCCATCG ACGAGGTGCTGGCGATGCTGGACGGCGAAAGCGCCCGCGCCCGGCTGGCGGAGATCGCCGCCACGCCGCCGCGGCCGCGC ATCCGCGCGCTGCTCGTCATGGCACCTGCGATCGTGCAGGCCTTCGATCCCGCCAGCCTCGCCGCGATTGATGTCGAAAC GCGGCTGATCCTCGGCGGAGCGGACAGCGTGACGCCGAACGCGACCAACGGCCTCGCCGTCGCGGCATTGGTGCCCCGTG CGCATCATCAGACCATCCCCGACGCCGGTCATTATGATTTCCTGACCGCCTGCGCCGCGGACGCGCCCAACCCCCTCCCC TTTTGCGCGCACCAGCGCCAGACCGCCGCAGCGCATCGCGCCGCGATCACCGCCGCGCTCGACCTCTTCGCGCGGACGAT CGGCGCGCGTACAGAATAA
Upstream 100 bases:
>100_bases CGCCACCGCGCTCAACCTCATTTGACCGCGCGATGACCCGCCAGTTAGAGCGGCGTGCTGTATATCTGACTCACCGGGAT TGCGTCAGAAAGGACAGACG
Downstream 100 bases:
>100_bases GGATTTCCGCCCGGCGCCCTGCAACGTAAGACCCTCCTGTCAGGAGATCGTCCGTTGAGCATCGCAAGCATCGCCCTTCC CCGCATCCTCCGCATCGGCG
Product: putative lipoprotein signal peptide
Products: NA
Alternate protein names: Alpha/Beta Hydrolase; Dienelactone Hydrolase; Lipoprotein
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MTGLRAPLRLALLLMLLCAAPTVWAGPFVGQRLMTADHPPAAARNADGSTRLRVTVWYPAAGDDGAGTAPPVVRDAPPAA GGRRGVILLSHGFGGAAVAMGWFARTMAEAGYVVIGVDHPGNNGLEAMTKAGAALFFERPGDLRRAFDHVAADPVLGPML DPGRVAAAGFSAGGFTALALGGARMETGLLRRFCTANPDDGVCRPQLEFAVPIDEVLAMLDGESARARLAEIAATPPRPR IRALLVMAPAIVQAFDPASLAAIDVETRLILGGADSVTPNATNGLAVAALVPRAHHQTIPDAGHYDFLTACAADAPNPLP FCAHQRQTAAAHRAAITAALDLFARTIGARTE
Sequences:
>Translated_352_residues MTGLRAPLRLALLLMLLCAAPTVWAGPFVGQRLMTADHPPAAARNADGSTRLRVTVWYPAAGDDGAGTAPPVVRDAPPAA GGRRGVILLSHGFGGAAVAMGWFARTMAEAGYVVIGVDHPGNNGLEAMTKAGAALFFERPGDLRRAFDHVAADPVLGPML DPGRVAAAGFSAGGFTALALGGARMETGLLRRFCTANPDDGVCRPQLEFAVPIDEVLAMLDGESARARLAEIAATPPRPR IRALLVMAPAIVQAFDPASLAAIDVETRLILGGADSVTPNATNGLAVAALVPRAHHQTIPDAGHYDFLTACAADAPNPLP FCAHQRQTAAAHRAAITAALDLFARTIGARTE >Mature_351_residues TGLRAPLRLALLLMLLCAAPTVWAGPFVGQRLMTADHPPAAARNADGSTRLRVTVWYPAAGDDGAGTAPPVVRDAPPAAG GRRGVILLSHGFGGAAVAMGWFARTMAEAGYVVIGVDHPGNNGLEAMTKAGAALFFERPGDLRRAFDHVAADPVLGPMLD PGRVAAAGFSAGGFTALALGGARMETGLLRRFCTANPDDGVCRPQLEFAVPIDEVLAMLDGESARARLAEIAATPPRPRI RALLVMAPAIVQAFDPASLAAIDVETRLILGGADSVTPNATNGLAVAALVPRAHHQTIPDAGHYDFLTACAADAPNPLPF CAHQRQTAAAHRAAITAALDLFARTIGARTE
Specific function: Unknown
COG id: COG4188
COG function: function code R; Predicted dienelactone hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36368; Mature: 36237
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGLRAPLRLALLLMLLCAAPTVWAGPFVGQRLMTADHPPAAARNADGSTRLRVTVWYPA CCCCCHHHHHHHHHHHHHCCCCHHCCHHHCCHHHCCCCCCCCCCCCCCCEEEEEEEEECC AGDDGAGTAPPVVRDAPPAAGGRRGVILLSHGFGGAAVAMGWFARTMAEAGYVVIGVDHP CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCC GNNGLEAMTKAGAALFFERPGDLRRAFDHVAADPVLGPMLDPGRVAAAGFSAGGFTALAL CCCCHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCEEEEEE GGARMETGLLRRFCTANPDDGVCRPQLEFAVPIDEVLAMLDGESARARLAEIAATPPRPR CCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCHH IRALLVMAPAIVQAFDPASLAAIDVETRLILGGADSVTPNATNGLAVAALVPRAHHQTIP HHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCHHHCCCC DAGHYDFLTACAADAPNPLPFCAHQRQTAAAHRAAITAALDLFARTIGARTE CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TGLRAPLRLALLLMLLCAAPTVWAGPFVGQRLMTADHPPAAARNADGSTRLRVTVWYPA CCCCHHHHHHHHHHHHHCCCCHHCCHHHCCHHHCCCCCCCCCCCCCCCEEEEEEEEECC AGDDGAGTAPPVVRDAPPAAGGRRGVILLSHGFGGAAVAMGWFARTMAEAGYVVIGVDHP CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCC GNNGLEAMTKAGAALFFERPGDLRRAFDHVAADPVLGPMLDPGRVAAAGFSAGGFTALAL CCCCHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCEEEEEE GGARMETGLLRRFCTANPDDGVCRPQLEFAVPIDEVLAMLDGESARARLAEIAATPPRPR CCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCHH IRALLVMAPAIVQAFDPASLAAIDVETRLILGGADSVTPNATNGLAVAALVPRAHHQTIP HHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCHHHCCCC DAGHYDFLTACAADAPNPLPFCAHQRQTAAAHRAAITAALDLFARTIGARTE CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA