Click here to switch to the map view.

The map label for this gene is yjgH [H]

Identifier: 103485626

GI number: 103485626

Start: 125193

End: 125585

Strand: Reverse

Name: yjgH [H]

Synonym: Sala_0130

Alternate gene names: 103485626

Gene position: 125585-125193 (Counterclockwise)

Preceding gene: 103485627

Following gene: 103485625

Centisome position: 3.75

GC content: 54.45

Gene sequence:

>393_bases
ATGGCCAAACGTGATGCGGTTTTCCCCGCAAACCGACATGCTCTCTACGAAGAGCATGGATATTCCGCAGCGATCCGGTC
GGATCGTTTGCTTTTCGTATCCGGCCAGGTCGGAAGTCGTGAAGACGGTTCGCCGGAACCAGAGTTCGCGGAGCAGGTTC
GGCTGGCCTTCGCAAATCTGGAAGCGACCCTGCTGGCTGCGGGATGCGGATTTGACGACATCGTCGATCTAACGACTTTC
CATACCGATCCCGAAAATCAGTTCGAAACGATTATGGCCGTGAAGAGCAAGATCTTCACTGAAGCGCCTTATCCGAACTG
GACAGCACTTGGTGTGAACTGGCTGGCCGGATTCGATTTCGAGATCAAGGTAATCGCCCGCATTCCAGACTGA

Upstream 100 bases:

>100_bases
AGTCAGATTGATGCTTGAGGCACAAAACAACTCAACGGACTATTCAGCCAAGGGCGATTTTTTGCCAAGGCCCGAATGTC
CTCAATCAAAGGAATGACAC

Downstream 100 bases:

>100_bases
CCGCAACCCGTGCTAGGCCAGTAAAATCCGAAACGAAAGAAAGTCGCGTCATCGCTGATTTCCTCGGAGCTGGCCTTTGG
GGCCTGTTTACAGCCAGCGG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MAKRDAVFPANRHALYEEHGYSAAIRSDRLLFVSGQVGSREDGSPEPEFAEQVRLAFANLEATLLAAGCGFDDIVDLTTF
HTDPENQFETIMAVKSKIFTEAPYPNWTALGVNWLAGFDFEIKVIARIPD

Sequences:

>Translated_130_residues
MAKRDAVFPANRHALYEEHGYSAAIRSDRLLFVSGQVGSREDGSPEPEFAEQVRLAFANLEATLLAAGCGFDDIVDLTTF
HTDPENQFETIMAVKSKIFTEAPYPNWTALGVNWLAGFDFEIKVIARIPD
>Mature_129_residues
AKRDAVFPANRHALYEEHGYSAAIRSDRLLFVSGQVGSREDGSPEPEFAEQVRLAFANLEATLLAAGCGFDDIVDLTTFH
TDPENQFETIMAVKSKIFTEAPYPNWTALGVNWLAGFDFEIKVIARIPD

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI1790696, Length=130, Percent_Identity=76.9230769230769, Blast_Score=214, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14437; Mature: 14306

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRDAVFPANRHALYEEHGYSAAIRSDRLLFVSGQVGSREDGSPEPEFAEQVRLAFANL
CCCCCCCCCCCCCHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
EATLLAAGCGFDDIVDLTTFHTDPENQFETIMAVKSKIFTEAPYPNWTALGVNWLAGFDF
CEEEEEECCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCE
EIKVIARIPD
EEEEEEECCC
>Mature Secondary Structure 
AKRDAVFPANRHALYEEHGYSAAIRSDRLLFVSGQVGSREDGSPEPEFAEQVRLAFANL
CCCCCCCCCCCCHHHHCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
EATLLAAGCGFDDIVDLTTFHTDPENQFETIMAVKSKIFTEAPYPNWTALGVNWLAGFDF
CEEEEEECCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCE
EIKVIARIPD
EEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]