| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485560
Identifier: 103485560
GI number: 103485560
Start: 69756
End: 70496
Strand: Direct
Name: 103485560
Synonym: Sala_0062
Alternate gene names: NA
Gene position: 69756-70496 (Clockwise)
Preceding gene: 103485559
Following gene: 103485561
Centisome position: 2.09
GC content: 61.94
Gene sequence:
>741_bases ATGAAACATCATCTGAAGCTCTTGATGCTGGCGATCGCGGCCGCGATGATTGGCGGTCCCGCGATGGCGCAGATTGAAAG CGCACAGCCTTTGCCCGTCGGCCAGCCGCTCACGCTTGCGGCAGGTGAGCGCAACGCAGTGCGCTATTTCTATTTTGCCG GCGTGCCCGGGGAAACGCGAAGCATCGACGTCAGTCTCGCCGGGAAAGTCATTATCGAAGTCTATGACGCCGCTGGAACG CTGTTGATGGTGCGGAGTGCGAGCGCTGGACGGTCATTCGACTTCATACCCTCCTACGCCGAAACCTATGTCATCGCCGT CATCCGACCGGGCGCGCCCATCGAAGCAGTGCTGCGGACGTCCGTCGTGGCGCCGACCCTTCAGCAATCGATCATGGCCA TAGGCGTGGGCTATGAGTTCGCAACCGAGCATGGTATCTCCCGATCGTGCTGGAGCGAGCAAGGCGCCGAGGTCACGCAC ACAGGCACGCTTCGGAAGGGCGACGCCTTCACGATGCGTATCAGGCTCGGCGCGGATCGATTGTCGCAAACCAACGAGAC GCTTGTCGGCGCCATCGCTTCGCGCAGCTCGGTCCGTAGCTGGTTGGAAGGTGCCAACCGCGTCAGCGAAGTCGACACGA ACGGCTCGGTCAGCGTGTCCAAACAGGTAAACGACCCGGCCAGCTTCCGCTGGCTGCCCGGCGTCGCGCGCAAATGGTAT CGCTACACCTGTCCAAGCTAG
Upstream 100 bases:
>100_bases AACTCGCCCGCAACATCGCCGCCAGCGCCAAGGCGAGGGCGGAATCGGAGGCGGCGCTCACGGCGTTTCTCGACGCCATG CGCAAGCGGGGGCGCGCGCA
Downstream 100 bases:
>100_bases AGGAGGCGGATACTTGCGACGCTGAAGGCGGCAACTAGACGATCCACTTCGTCGCGGCGGAGCTTCTGACACATTTCCGC TATCTCAAATTAGCGTCTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MKHHLKLLMLAIAAAMIGGPAMAQIESAQPLPVGQPLTLAAGERNAVRYFYFAGVPGETRSIDVSLAGKVIIEVYDAAGT LLMVRSASAGRSFDFIPSYAETYVIAVIRPGAPIEAVLRTSVVAPTLQQSIMAIGVGYEFATEHGISRSCWSEQGAEVTH TGTLRKGDAFTMRIRLGADRLSQTNETLVGAIASRSSVRSWLEGANRVSEVDTNGSVSVSKQVNDPASFRWLPGVARKWY RYTCPS
Sequences:
>Translated_246_residues MKHHLKLLMLAIAAAMIGGPAMAQIESAQPLPVGQPLTLAAGERNAVRYFYFAGVPGETRSIDVSLAGKVIIEVYDAAGT LLMVRSASAGRSFDFIPSYAETYVIAVIRPGAPIEAVLRTSVVAPTLQQSIMAIGVGYEFATEHGISRSCWSEQGAEVTH TGTLRKGDAFTMRIRLGADRLSQTNETLVGAIASRSSVRSWLEGANRVSEVDTNGSVSVSKQVNDPASFRWLPGVARKWY RYTCPS >Mature_246_residues MKHHLKLLMLAIAAAMIGGPAMAQIESAQPLPVGQPLTLAAGERNAVRYFYFAGVPGETRSIDVSLAGKVIIEVYDAAGT LLMVRSASAGRSFDFIPSYAETYVIAVIRPGAPIEAVLRTSVVAPTLQQSIMAIGVGYEFATEHGISRSCWSEQGAEVTH TGTLRKGDAFTMRIRLGADRLSQTNETLVGAIASRSSVRSWLEGANRVSEVDTNGSVSVSKQVNDPASFRWLPGVARKWY RYTCPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26434; Mature: 26434
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHHLKLLMLAIAAAMIGGPAMAQIESAQPLPVGQPLTLAAGERNAVRYFYFAGVPGETR CCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCC SIDVSLAGKVIIEVYDAAGTLLMVRSASAGRSFDFIPSYAETYVIAVIRPGAPIEAVLRT EEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH SVVAPTLQQSIMAIGVGYEFATEHGISRSCWSEQGAEVTHTGTLRKGDAFTMRIRLGADR HHHHHHHHHHHHHEECCCHHHHHCCCCHHHHHHCCCEEEECCCEECCCEEEEEEEECCHH LSQTNETLVGAIASRSSVRSWLEGANRVSEVDTNGSVSVSKQVNDPASFRWLPGVARKWY HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCHHHHHHE RYTCPS EECCCC >Mature Secondary Structure MKHHLKLLMLAIAAAMIGGPAMAQIESAQPLPVGQPLTLAAGERNAVRYFYFAGVPGETR CCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCC SIDVSLAGKVIIEVYDAAGTLLMVRSASAGRSFDFIPSYAETYVIAVIRPGAPIEAVLRT EEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH SVVAPTLQQSIMAIGVGYEFATEHGISRSCWSEQGAEVTHTGTLRKGDAFTMRIRLGADR HHHHHHHHHHHHHEECCCHHHHHCCCCHHHHHHCCCEEEECCCEECCCEEEEEEEECCHH LSQTNETLVGAIASRSSVRSWLEGANRVSEVDTNGSVSVSKQVNDPASFRWLPGVARKWY HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCHHHHHHE RYTCPS EECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA