| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485557
Identifier: 103485557
GI number: 103485557
Start: 65272
End: 67644
Strand: Direct
Name: 103485557
Synonym: Sala_0059
Alternate gene names: NA
Gene position: 65272-67644 (Clockwise)
Preceding gene: 103485556
Following gene: 103485558
Centisome position: 1.95
GC content: 65.23
Gene sequence:
>2373_bases ATGGCTGGCCTCCGATGGATCTTTGACAGGGCTTCCGGCACGCCGCGCGTCGGCTATAGAAGCGCTATGGCCGGCTCCGT CGCGACGCTCTGGAAACAACTCGATATCCGCTCGAAAGGCTGGCCGGCCCGGCTGCGTGGGCTAATCGTTGTGCGTACCG GCCATCTCGCCGCCGACGCCCGGCAATCGGCGGGCAACCACCGCGGCAAGATCGAGGGCCTCGGCTGGCTCGCGGTCGCC GCCGGCGCCATCTTTTCGGTCCCACCGCTTCAATCACTCATCGCACCGCTCCTCGGCAGTGAGGGCGTCGCTACGCTGCG CGATATGATCATTGCCGCCAGCGGCGCTATGATCGGCGCGACCGCTATTGTTGCATCCTTCATTCTGTTCGCGATGCAGG TGAATGTCGAACGGCTTCCGTATGGTCTTTTCCATCGCTTCAGTTCCGATGCGCGACTGCTCGGCGGTTTTGCTGCCGCC TTCATGCTCTCGCTCGGCACGATGGCGCTCGCCTTTATCGAGGATCCAGGTCATTCATCGGCGGTCGTAGTCGCCGCCAT CCTCGCCGTCGCGCTCATTTTAAGGTTGCTTCTCCACGCCTACCGCCGCTCGCTCCGCCTTATCGACCCGGTGTCGCAGC TCTCGATGATCGAGGCAGATGCGGCGGCCAAGCTCCGCCGCTGGGACCGCCGCGTGCGGTGGCTGCAGCCGCTACTTGCC GAAGACCCGGGACCGGGCGAGCCCGCCGCGCGCCGCGAGGGCATGCGTCTCGATGTCCGCCGCGCCGCGATCCTCGAGGG GAGCAAGGGGTGGGACGGTCCGCTACGCACCGCGATCGGGCAGGCGGCCGCCTTTTCGCGCCAGGCGGCCGAACGCGGCG ATCTCGAGGTCTCGGCGGCCGCGCTAAACAGCCTGCTCGCGCTCAATCGCGCCTATGTCGCCGTGAAGGGGCGGAGCTTC CACGCGCGCACCCTGCTGTTCGAGAACCCTCAGGTTACCGACGGAACGATCAACGCGACGCTCGAAGAGCTCCGTCGGCT GCGCGTGGCCGCGCTCGCAGGTCTCGACGAACCGCATCTCGAACAGCTTTTTAAGGCCCATTTGGGGCTGGTGCGGGCCT ATCTCGGCATCGAATATCCGGGGCTCAATCCCTCGCCGAGCCATGCGCTGCTCGCAGCCCATTATCTCGAAAGCGCGGTC GAGGCAGTCATTCCGACACAGATGACCGATACGCTGATGGAAGGCGTCAAATGTCTCGGCGACGCCGCAAGGCTGTTCGC GAGTGCCGGTCATGCAAGCGCAGCGAGCAGCCTTTTCGGCAAGATCGCGAAGATCGGCGTTGCGGGCGCGATGCAGCGCG ACGGTTTTCCGGTGGCCGTCGTCGCAATCGAACAGCTTGCCTCGCTCCAACTCAGCTTGTTCTATGGTGACGGCGCGAAT CATGGCTATGCCACGCGGCAATTGCGCAGCGCCATCTTCACCACCGCAACCGCGATGTTCGCGCTCCCAGATCTGCCGCT CGCGTCAAAACAGATTACCGCGCTCGCACCTTTCTTTTCGGGCAGCGATCCGCGCGGCTTTCGCTCTTCGCTCACTTCGC TCGTCAATGCGCTCCATGAGCCGGGCGCCGACGCCGCGATGGCAGCCAAGGTCGCGCACAATATCGTGGAATGGGCCGAC AAGCTCTATGTCGACGTCCGCGCGCTCCTTAAGCTCGCGATCGAGAAACGCTCGCAGTTCGTCATCGATCTCATCCACTG GATCACCGGGATGAGCGAGCTTCTCTTTTTTGCCGCCAAGGCGCCCGCGACGGCTCATCATGACCGCTCCACTCTGGAAA AGCAGGCGCATTTTCTTATTGGCTCGCTGACCTTCATTCCGCGCGATCCGGAGACGGCGAAATGGATCGAGGCCTTCTCG CTGATCGATATCCTGTTCGAGTTCGGATCGATGGCGAGCGAGCGCGAATGGCTGGAAGGCTTCGACACCGCCTTCGACGC GCTGCTGCGCTGGGGCTTCGAAGCCGGTGCCGAAAACACCGGCTGGAACACGCTCGACAGCGCGCTCGCGGCGCTCGCGG CGCTGACGATCGGCGAGGACGCCGCGCTGCAAACCCGTCTCATTGCCGCGGTGCAGGCGGCGGTCGCAGCCGAAGGCGCG CCCGCAGCGCCCGTGCGCGAGCGCGCCGCGCGCTTCCTGCGCGGCCGCGCCGATCATCTGCACAGCAGCGATTTCGATAC CGACGCGGTCAACCTCGCTCTCTGCGCCGATATCCCTGCCGCCCGCGCCTTGCTTGCCGAGATCGCTGAACTTCTGGCGC CTTTACTCCCTCCGCCGCCCATTCCGCCGGCGCCGGCGCCTCCGGATGGGTAG
Upstream 100 bases:
>100_bases CGTTGCGGAAGGGCGCAGCCATCCATGCCACCAAAGCCGCGGAGCGGAAAATAGCCGAAGGCCTTGAGCTGCTCGATCTC TGACGGCTTGAATAGCCTCC
Downstream 100 bases:
>100_bases GTCCGCCCATCCGCGGCCCACGTGCGAAGTCATGTCAGATCGTCAGCCAGTCGCCCTACAGCCAAATAACGCCGGAAGGA GCGCGTCTCCCGATGTGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 790; Mature: 789
Protein sequence:
>790_residues MAGLRWIFDRASGTPRVGYRSAMAGSVATLWKQLDIRSKGWPARLRGLIVVRTGHLAADARQSAGNHRGKIEGLGWLAVA AGAIFSVPPLQSLIAPLLGSEGVATLRDMIIAASGAMIGATAIVASFILFAMQVNVERLPYGLFHRFSSDARLLGGFAAA FMLSLGTMALAFIEDPGHSSAVVVAAILAVALILRLLLHAYRRSLRLIDPVSQLSMIEADAAAKLRRWDRRVRWLQPLLA EDPGPGEPAARREGMRLDVRRAAILEGSKGWDGPLRTAIGQAAAFSRQAAERGDLEVSAAALNSLLALNRAYVAVKGRSF HARTLLFENPQVTDGTINATLEELRRLRVAALAGLDEPHLEQLFKAHLGLVRAYLGIEYPGLNPSPSHALLAAHYLESAV EAVIPTQMTDTLMEGVKCLGDAARLFASAGHASAASSLFGKIAKIGVAGAMQRDGFPVAVVAIEQLASLQLSLFYGDGAN HGYATRQLRSAIFTTATAMFALPDLPLASKQITALAPFFSGSDPRGFRSSLTSLVNALHEPGADAAMAAKVAHNIVEWAD KLYVDVRALLKLAIEKRSQFVIDLIHWITGMSELLFFAAKAPATAHHDRSTLEKQAHFLIGSLTFIPRDPETAKWIEAFS LIDILFEFGSMASEREWLEGFDTAFDALLRWGFEAGAENTGWNTLDSALAALAALTIGEDAALQTRLIAAVQAAVAAEGA PAAPVRERAARFLRGRADHLHSSDFDTDAVNLALCADIPAARALLAEIAELLAPLLPPPPIPPAPAPPDG
Sequences:
>Translated_790_residues MAGLRWIFDRASGTPRVGYRSAMAGSVATLWKQLDIRSKGWPARLRGLIVVRTGHLAADARQSAGNHRGKIEGLGWLAVA AGAIFSVPPLQSLIAPLLGSEGVATLRDMIIAASGAMIGATAIVASFILFAMQVNVERLPYGLFHRFSSDARLLGGFAAA FMLSLGTMALAFIEDPGHSSAVVVAAILAVALILRLLLHAYRRSLRLIDPVSQLSMIEADAAAKLRRWDRRVRWLQPLLA EDPGPGEPAARREGMRLDVRRAAILEGSKGWDGPLRTAIGQAAAFSRQAAERGDLEVSAAALNSLLALNRAYVAVKGRSF HARTLLFENPQVTDGTINATLEELRRLRVAALAGLDEPHLEQLFKAHLGLVRAYLGIEYPGLNPSPSHALLAAHYLESAV EAVIPTQMTDTLMEGVKCLGDAARLFASAGHASAASSLFGKIAKIGVAGAMQRDGFPVAVVAIEQLASLQLSLFYGDGAN HGYATRQLRSAIFTTATAMFALPDLPLASKQITALAPFFSGSDPRGFRSSLTSLVNALHEPGADAAMAAKVAHNIVEWAD KLYVDVRALLKLAIEKRSQFVIDLIHWITGMSELLFFAAKAPATAHHDRSTLEKQAHFLIGSLTFIPRDPETAKWIEAFS LIDILFEFGSMASEREWLEGFDTAFDALLRWGFEAGAENTGWNTLDSALAALAALTIGEDAALQTRLIAAVQAAVAAEGA PAAPVRERAARFLRGRADHLHSSDFDTDAVNLALCADIPAARALLAEIAELLAPLLPPPPIPPAPAPPDG >Mature_789_residues AGLRWIFDRASGTPRVGYRSAMAGSVATLWKQLDIRSKGWPARLRGLIVVRTGHLAADARQSAGNHRGKIEGLGWLAVAA GAIFSVPPLQSLIAPLLGSEGVATLRDMIIAASGAMIGATAIVASFILFAMQVNVERLPYGLFHRFSSDARLLGGFAAAF MLSLGTMALAFIEDPGHSSAVVVAAILAVALILRLLLHAYRRSLRLIDPVSQLSMIEADAAAKLRRWDRRVRWLQPLLAE DPGPGEPAARREGMRLDVRRAAILEGSKGWDGPLRTAIGQAAAFSRQAAERGDLEVSAAALNSLLALNRAYVAVKGRSFH ARTLLFENPQVTDGTINATLEELRRLRVAALAGLDEPHLEQLFKAHLGLVRAYLGIEYPGLNPSPSHALLAAHYLESAVE AVIPTQMTDTLMEGVKCLGDAARLFASAGHASAASSLFGKIAKIGVAGAMQRDGFPVAVVAIEQLASLQLSLFYGDGANH GYATRQLRSAIFTTATAMFALPDLPLASKQITALAPFFSGSDPRGFRSSLTSLVNALHEPGADAAMAAKVAHNIVEWADK LYVDVRALLKLAIEKRSQFVIDLIHWITGMSELLFFAAKAPATAHHDRSTLEKQAHFLIGSLTFIPRDPETAKWIEAFSL IDILFEFGSMASEREWLEGFDTAFDALLRWGFEAGAENTGWNTLDSALAALAALTIGEDAALQTRLIAAVQAAVAAEGAP AAPVRERAARFLRGRADHLHSSDFDTDAVNLALCADIPAARALLAEIAELLAPLLPPPPIPPAPAPPDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84335; Mature: 84204
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGLRWIFDRASGTPRVGYRSAMAGSVATLWKQLDIRSKGWPARLRGLIVVRTGHLAADA CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCHHHHH RQSAGNHRGKIEGLGWLAVAAGAIFSVPPLQSLIAPLLGSEGVATLRDMIIAASGAMIGA HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH TAIVASFILFAMQVNVERLPYGLFHRFSSDARLLGGFAAAFMLSLGTMALAFIEDPGHSS HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCH AVVVAAILAVALILRLLLHAYRRSLRLIDPVSQLSMIEADAAAKLRRWDRRVRWLQPLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDPGPGEPAARREGMRLDVRRAAILEGSKGWDGPLRTAIGQAAAFSRQAAERGDLEVSAA CCCCCCCCHHHHCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH ALNSLLALNRAYVAVKGRSFHARTLLFENPQVTDGTINATLEELRRLRVAALAGLDEPHL HHHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH EQLFKAHLGLVRAYLGIEYPGLNPSPSHALLAAHYLESAVEAVIPTQMTDTLMEGVKCLG HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH DAARLFASAGHASAASSLFGKIAKIGVAGAMQRDGFPVAVVAIEQLASLQLSLFYGDGAN HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEECCCCC HGYATRQLRSAIFTTATAMFALPDLPLASKQITALAPFFSGSDPRGFRSSLTSLVNALHE CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC PGADAAMAAKVAHNIVEWADKLYVDVRALLKLAIEKRSQFVIDLIHWITGMSELLFFAAK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APATAHHDRSTLEKQAHFLIGSLTFIPRDPETAKWIEAFSLIDILFEFGSMASEREWLEG CCCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FDTAFDALLRWGFEAGAENTGWNTLDSALAALAALTIGEDAALQTRLIAAVQAAVAAEGA HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC PAAPVRERAARFLRGRADHLHSSDFDTDAVNLALCADIPAARALLAEIAELLAPLLPPPP CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHCCCCCC IPPAPAPPDG CCCCCCCCCC >Mature Secondary Structure AGLRWIFDRASGTPRVGYRSAMAGSVATLWKQLDIRSKGWPARLRGLIVVRTGHLAADA CCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCHHHHH RQSAGNHRGKIEGLGWLAVAAGAIFSVPPLQSLIAPLLGSEGVATLRDMIIAASGAMIGA HHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH TAIVASFILFAMQVNVERLPYGLFHRFSSDARLLGGFAAAFMLSLGTMALAFIEDPGHSS HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCH AVVVAAILAVALILRLLLHAYRRSLRLIDPVSQLSMIEADAAAKLRRWDRRVRWLQPLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDPGPGEPAARREGMRLDVRRAAILEGSKGWDGPLRTAIGQAAAFSRQAAERGDLEVSAA CCCCCCCCHHHHCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH ALNSLLALNRAYVAVKGRSFHARTLLFENPQVTDGTINATLEELRRLRVAALAGLDEPHL HHHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH EQLFKAHLGLVRAYLGIEYPGLNPSPSHALLAAHYLESAVEAVIPTQMTDTLMEGVKCLG HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH DAARLFASAGHASAASSLFGKIAKIGVAGAMQRDGFPVAVVAIEQLASLQLSLFYGDGAN HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEECCCCC HGYATRQLRSAIFTTATAMFALPDLPLASKQITALAPFFSGSDPRGFRSSLTSLVNALHE CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC PGADAAMAAKVAHNIVEWADKLYVDVRALLKLAIEKRSQFVIDLIHWITGMSELLFFAAK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APATAHHDRSTLEKQAHFLIGSLTFIPRDPETAKWIEAFSLIDILFEFGSMASEREWLEG CCCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FDTAFDALLRWGFEAGAENTGWNTLDSALAALAALTIGEDAALQTRLIAAVQAAVAAEGA HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC PAAPVRERAARFLRGRADHLHSSDFDTDAVNLALCADIPAARALLAEIAELLAPLLPPPP CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHCCCCCC IPPAPAPPDG CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA