Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485537

Identifier: 103485537

GI number: 103485537

Start: 39789

End: 40247

Strand: Reverse

Name: 103485537

Synonym: Sala_0039

Alternate gene names: NA

Gene position: 40247-39789 (Counterclockwise)

Preceding gene: 103485538

Following gene: 103485531

Centisome position: 1.2

GC content: 64.49

Gene sequence:

>459_bases
ATGGATATGCTCGCCTCCTATTTCGCCGCGCACGACTGGCCGCACGAGATGGTCGGCGAGGACGAGATTGTCGCGACCGC
GCAGGGCAGCTGGACGACATACGAACTGCGCGCGGTGTGGCGCGCCGACGATGGGGTGATCCAGCTCCTCGCCTTTCCCG
ACATCCGCGTGGCCGACGACAAGCGCGCCGTCGCGCACGAGGCGCTGGCGATGATCAACGAGCAATTGTGGCTCGGCCAT
TTCGAGCTGTGGTCGAACAGCGGCACCATCCTCTATCGCCACGGGATGCTGCTCGGCGCCGATGCTGCGCTGCCACTCGA
CCTCACCGAAACGCTGGTCGAAAGCGCTATCGACGAATGCGAACGCTTTTATCCGGTGTTTCAGTTCGTGCTGTGGGGCG
GCAAGACCCCCGCAGAAGCGCTCGCCGCCTCGCTGATCGAAACGCGCGGCGAGGCATAA

Upstream 100 bases:

>100_bases
CGTTTTGCGTCGATGACTCGCCACCCGACCAAACACTCGCTAAAGCGCGCCTATGAGTGACGATATTTACGAAGATGATG
ACGGTCAGGACGCGGCGCCG

Downstream 100 bases:

>100_bases
GCCTACCGCTTTTCGAAACGCGCCAGCCCCGCGCCCAGCTCGTTCGCGCCGATCGCCAGCGCCTCGCCGCTCCAGTCGGC
GACAAACACCGATCGGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MDMLASYFAAHDWPHEMVGEDEIVATAQGSWTTYELRAVWRADDGVIQLLAFPDIRVADDKRAVAHEALAMINEQLWLGH
FELWSNSGTILYRHGMLLGADAALPLDLTETLVESAIDECERFYPVFQFVLWGGKTPAEALAASLIETRGEA

Sequences:

>Translated_152_residues
MDMLASYFAAHDWPHEMVGEDEIVATAQGSWTTYELRAVWRADDGVIQLLAFPDIRVADDKRAVAHEALAMINEQLWLGH
FELWSNSGTILYRHGMLLGADAALPLDLTETLVESAIDECERFYPVFQFVLWGGKTPAEALAASLIETRGEA
>Mature_152_residues
MDMLASYFAAHDWPHEMVGEDEIVATAQGSWTTYELRAVWRADDGVIQLLAFPDIRVADDKRAVAHEALAMINEQLWLGH
FELWSNSGTILYRHGMLLGADAALPLDLTETLVESAIDECERFYPVFQFVLWGGKTPAEALAASLIETRGEA

Specific function: Unknown

COG id: COG5465

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16952; Mature: 16952

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMLASYFAAHDWPHEMVGEDEIVATAQGSWTTYELRAVWRADDGVIQLLAFPDIRVADD
CCHHHHHHHHCCCCHHHCCCCCEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCEECCC
KRAVAHEALAMINEQLWLGHFELWSNSGTILYRHGMLLGADAALPLDLTETLVESAIDEC
HHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHH
ERFYPVFQFVLWGGKTPAEALAASLIETRGEA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDMLASYFAAHDWPHEMVGEDEIVATAQGSWTTYELRAVWRADDGVIQLLAFPDIRVADD
CCHHHHHHHHCCCCHHHCCCCCEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCEECCC
KRAVAHEALAMINEQLWLGHFELWSNSGTILYRHGMLLGADAALPLDLTETLVESAIDEC
HHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHH
ERFYPVFQFVLWGGKTPAEALAASLIETRGEA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA