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The map label for this gene is rutD [H]

Identifier: 103485515

GI number: 103485515

Start: 12546

End: 13529

Strand: Reverse

Name: rutD [H]

Synonym: Sala_0017

Alternate gene names: 103485515

Gene position: 13529-12546 (Counterclockwise)

Preceding gene: 103485516

Following gene: 103485514

Centisome position: 0.4

GC content: 66.26

Gene sequence:

>984_bases
ATGACAGGTTTTTCTCCCCCCCGGATTTTCCGTCGCCGCCATTCGGGCGTCGCCGCCGCGCTCGCCCTGCTGGCCAGCGC
CGCCGTCGTCGCGGCGCTGCCCCAACCCGCATATGCCCAACAGCCCGCAACGACCACCGCATCGGCCAGCGCCGCCAGGA
CGGGGCATGCGACGGTCAACGGCGTGCGCATCGCCTATGCGGTGCATGGCGACCCGACATCGAAGCAGACGCCGTTGCTG
GTGCTGCACGGCGCGTTCATGTCGGGCGAAGCGATGGCACCCTTCGTCACCCCCTTTGTCGCATCGCGCCCCGTCATCAC
CATCGACGCACGCGGCCACGGCCGCACCGGCAAGGTCGGCGGTGCGTTCAGCTATGACCAGATGGCCGACGATGCAGCCG
CCGTCCTCGCGTCGCTGCGCGTCGAACGCGCCGATGTGCTGGGCTATTCGATGGGCGGCAGCACCGCGATCGCGATGGCG
GTGCGCCACCCGGAACGCGTCGGCAAACAGGTGATCATTTCGGGCGCCGCCAGGCTCGACGGGTGGGTTCCCGAAGTGTT
GGAGGGCATCGCCAAAATGACCCCCGAAATGTTCGCCGGCACCCCGATGGAGACCGAGTATAAACGGCTGTCGCCAACCC
CCGACGCCTTTCCCGACCTGGTCGCGGCGATCAAGCACATCGATTCGACGCCCTTCGCCTATAGCGACGCACAATTGCGC
GCGATTCCGGGCAAGACGATGATCATTTTGGGCGACGCCGACGGCATCACATTCGAGCACGCGATCAAGCTGTTCAAGCT
GCGTGGCGGCGCCGACATCGCAACGGCAACGCAGGGGTTCATGACCCAGCCACCCAAGGCGCGCCTGTCGATCCTGCCCG
CGACATCGCACATCGGCGTTATGGCCGAAGCCCCCACGATCGCGGAACAGGCCATCGCCTTTCTGGACGATGCCATGCCG
CCAATGCCCGAAGGCTTTTTCTGA

Upstream 100 bases:

>100_bases
AGGCCGATTACGGCCTGGGCCACGGCCACGCCATGTCGGTCGTCGCCTTCATCAAAGGCAAACGAAGCTAGGCTTCGTCA
AACTATAGAGGATTATATCC

Downstream 100 bases:

>100_bases
CACCCCGTCCCCAAGGAGAGAAATGATGCCGATCAACCCCGACGCCGCCATCGTGCTCACTGCCTTTGACTGGGTTCCCG
ATTTCGCGCGCGGCTTTGTC

Product: alpha/beta hydrolase fold

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MTGFSPPRIFRRRHSGVAAALALLASAAVVAALPQPAYAQQPATTTASASAARTGHATVNGVRIAYAVHGDPTSKQTPLL
VLHGAFMSGEAMAPFVTPFVASRPVITIDARGHGRTGKVGGAFSYDQMADDAAAVLASLRVERADVLGYSMGGSTAIAMA
VRHPERVGKQVIISGAARLDGWVPEVLEGIAKMTPEMFAGTPMETEYKRLSPTPDAFPDLVAAIKHIDSTPFAYSDAQLR
AIPGKTMIILGDADGITFEHAIKLFKLRGGADIATATQGFMTQPPKARLSILPATSHIGVMAEAPTIAEQAIAFLDDAMP
PMPEGFF

Sequences:

>Translated_327_residues
MTGFSPPRIFRRRHSGVAAALALLASAAVVAALPQPAYAQQPATTTASASAARTGHATVNGVRIAYAVHGDPTSKQTPLL
VLHGAFMSGEAMAPFVTPFVASRPVITIDARGHGRTGKVGGAFSYDQMADDAAAVLASLRVERADVLGYSMGGSTAIAMA
VRHPERVGKQVIISGAARLDGWVPEVLEGIAKMTPEMFAGTPMETEYKRLSPTPDAFPDLVAAIKHIDSTPFAYSDAQLR
AIPGKTMIILGDADGITFEHAIKLFKLRGGADIATATQGFMTQPPKARLSILPATSHIGVMAEAPTIAEQAIAFLDDAMP
PMPEGFF
>Mature_326_residues
TGFSPPRIFRRRHSGVAAALALLASAAVVAALPQPAYAQQPATTTASASAARTGHATVNGVRIAYAVHGDPTSKQTPLLV
LHGAFMSGEAMAPFVTPFVASRPVITIDARGHGRTGKVGGAFSYDQMADDAAAVLASLRVERADVLGYSMGGSTAIAMAV
RHPERVGKQVIISGAARLDGWVPEVLEGIAKMTPEMFAGTPMETEYKRLSPTPDAFPDLVAAIKHIDSTPFAYSDAQLRA
IPGKTMIILGDADGITFEHAIKLFKLRGGADIATATQGFMTQPPKARLSILPATSHIGVMAEAPTIAEQAIAFLDDAMPP
MPEGFF

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34231; Mature: 34100

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGFSPPRIFRRRHSGVAAALALLASAAVVAALPQPAYAQQPATTTASASAARTGHATVN
CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEC
GVRIAYAVHGDPTSKQTPLLVLHGAFMSGEAMAPFVTPFVASRPVITIDARGHGRTGKVG
CEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCC
GAFSYDQMADDAAAVLASLRVERADVLGYSMGGSTAIAMAVRHPERVGKQVIISGAARLD
CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEECCHHHHCCEEEEECHHHHC
GWVPEVLEGIAKMTPEMFAGTPMETEYKRLSPTPDAFPDLVAAIKHIDSTPFAYSDAQLR
CCHHHHHHHHHHHCHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCCEEE
AIPGKTMIILGDADGITFEHAIKLFKLRGGADIATATQGFMTQPPKARLSILPATSHIGV
ECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCEE
MAEAPTIAEQAIAFLDDAMPPMPEGFF
EECCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TGFSPPRIFRRRHSGVAAALALLASAAVVAALPQPAYAQQPATTTASASAARTGHATVN
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEC
GVRIAYAVHGDPTSKQTPLLVLHGAFMSGEAMAPFVTPFVASRPVITIDARGHGRTGKVG
CEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCC
GAFSYDQMADDAAAVLASLRVERADVLGYSMGGSTAIAMAVRHPERVGKQVIISGAARLD
CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEECCHHHHCCEEEEECHHHHC
GWVPEVLEGIAKMTPEMFAGTPMETEYKRLSPTPDAFPDLVAAIKHIDSTPFAYSDAQLR
CCHHHHHHHHHHHCHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCCEEE
AIPGKTMIILGDADGITFEHAIKLFKLRGGADIATATQGFMTQPPKARLSILPATSHIGV
ECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCEE
MAEAPTIAEQAIAFLDDAMPPMPEGFF
EECCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA