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The map label for this gene is ddpA [H]

Identifier: 197294775

GI number: 197294775

Start: 768393

End: 769952

Strand: Direct

Name: ddpA [H]

Synonym: PAa_0755

Alternate gene names: 197294775

Gene position: 768393-769952 (Clockwise)

Preceding gene: 197294774

Following gene: 197294776

Centisome position: 87.32

GC content: 29.23

Gene sequence:

>1560_bases
ATGAATTTCAAAAAAATTAAAAAAAGCCACCAATTATTAATTTTAGGGGTGGTATTTGTTTTGTTATTTGTAGGATTGGT
AATTTATTTTTGGCCTCGCAATGATTCCCAAAAAGATTCTACAAATAAAAACGTTTTGAAAATATCTTTATTAAATGATA
TTACAGGAATTGACGTCGGGGATAAAAGTCACACCCAAATTGCAAATGGCGACAGATTGTTTTATGCCATCCACCAAACT
TTATTAATTTCTGATGAAAACTCGAATTTGCATCCCCAATTGGCAACAAATTGGAAACACGATGCAACAAACAAGAAAGT
AATTGATTTTAATTTAAGAGATGATGTCTTTTTTCACAATGGCAAAAAGTTTGGCGCTGAAGATGTTAAATTTTCTTTTG
AAAGAGCAAAACAAAAAGGACATGATGAATATGAAAACATTGAAAAAATAGAAGTTTTAGACAATTATAAATTAAGAATT
ACCTTAAAAAGCTTACCTGTTTATTTTTGGGAACCCCTTTCTAGGTTAAGAATTTTAAGTAAAGAAACCTTACAAGAAGT
GCAAAACCAAGGAGAAGAAGCTCTTCAAAAAGCTTTACGAGTGGGTGCAGGTCCTTATAAATTAGTTAATTGGGTTCCTC
AAGAAAAAATTGAGTTAGAACTTAATGAAGTTTATTATGATAAAGAAGTTATCAAAGATAGTTGTAAAAAAATTGTTTTT
GAAATTATTAAGGATATCGATACTGCTTTGCTCAAATTAAAAGAAGGCAGTCTTGATGCTATTTTTGATTACCACGTAAA
TAAACTAGAAAACACTAAACAAGAAAAAGGAATTAAAATAGTTGCAAATGAAGCTTGTAAATGTAGCTATTTGTTTTTGA
ATTGTACCAAACTAGATCTAGAAAAACGTCAATTAGTGGCAAGAACTATTAACATTCCAAAAATTATTCAAGACCTTAAT
TTAGAAGTAAAAGAGTTAAAAAGCTACGTTCCTGAAGGCTCTCATGGCCATAATCCTTCACTTTCATATGTTTATCAAGA
AAATAATTTCCAAGACGTCAAAAATAAAATAAGTGGTTTAAGTGATAAAAGACTTTTTTTAGGTTTTTCTCAAAAAGAAA
GTCCGGAAGTGATGAAAAAAATAGTAGAACAACTAACATCTGCCGGTTTTGAAGTTGCAACTGAAAGTCCTGAATTTACT
GGCTTTCTTAAGATGATTCAGAAAAGTAAATATGATATGGCATTTTTTTCAGATATGCATGAAATGCCTTACGGACATAA
ATCAATGTTTGATATTGTAGTTCCTGGCGGACAAGATTCTGACTATACTCATATTCAAGGCGACTCTGAATTAGAAAATC
TCCTAAAAGAAGTTCAAACAGAAGAAAATAAAGAAAAATATGATAACAAAGTTCAAAGACTACAACAAATTTTTCATGAA
AAAACATATTTAATTCCTTTTTACCAACAAAAAATTTATTTTTTAACTAATGAAAAAGTAAGTCAATTGACTTGTGATAA
ATTTAACCGCACCAATTTAACTCAAGCAAGAAAAAACTAA

Upstream 100 bases:

>100_bases
TTACTTGTTTTTTTTTTTTTTTGATGGTAAAATATAATTAATAGTGATATTTTTAAAGGTTGCTATTGAAAACCAAAGAA
AGAAAAAGAAAGGATTTTGA

Downstream 100 bases:

>100_bases
AAAAATTACTAATTAATCAAAAAAAGATACAACTTTTTTTAATTGTTTACCGCAACCTTCTACATTTATCAGTGTTGGAT
ATTTAAGGGGTAGATTAAGA

Product: ABC-type peptide/nickel transport system substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MNFKKIKKSHQLLILGVVFVLLFVGLVIYFWPRNDSQKDSTNKNVLKISLLNDITGIDVGDKSHTQIANGDRLFYAIHQT
LLISDENSNLHPQLATNWKHDATNKKVIDFNLRDDVFFHNGKKFGAEDVKFSFERAKQKGHDEYENIEKIEVLDNYKLRI
TLKSLPVYFWEPLSRLRILSKETLQEVQNQGEEALQKALRVGAGPYKLVNWVPQEKIELELNEVYYDKEVIKDSCKKIVF
EIIKDIDTALLKLKEGSLDAIFDYHVNKLENTKQEKGIKIVANEACKCSYLFLNCTKLDLEKRQLVARTINIPKIIQDLN
LEVKELKSYVPEGSHGHNPSLSYVYQENNFQDVKNKISGLSDKRLFLGFSQKESPEVMKKIVEQLTSAGFEVATESPEFT
GFLKMIQKSKYDMAFFSDMHEMPYGHKSMFDIVVPGGQDSDYTHIQGDSELENLLKEVQTEENKEKYDNKVQRLQQIFHE
KTYLIPFYQQKIYFLTNEKVSQLTCDKFNRTNLTQARKN

Sequences:

>Translated_519_residues
MNFKKIKKSHQLLILGVVFVLLFVGLVIYFWPRNDSQKDSTNKNVLKISLLNDITGIDVGDKSHTQIANGDRLFYAIHQT
LLISDENSNLHPQLATNWKHDATNKKVIDFNLRDDVFFHNGKKFGAEDVKFSFERAKQKGHDEYENIEKIEVLDNYKLRI
TLKSLPVYFWEPLSRLRILSKETLQEVQNQGEEALQKALRVGAGPYKLVNWVPQEKIELELNEVYYDKEVIKDSCKKIVF
EIIKDIDTALLKLKEGSLDAIFDYHVNKLENTKQEKGIKIVANEACKCSYLFLNCTKLDLEKRQLVARTINIPKIIQDLN
LEVKELKSYVPEGSHGHNPSLSYVYQENNFQDVKNKISGLSDKRLFLGFSQKESPEVMKKIVEQLTSAGFEVATESPEFT
GFLKMIQKSKYDMAFFSDMHEMPYGHKSMFDIVVPGGQDSDYTHIQGDSELENLLKEVQTEENKEKYDNKVQRLQQIFHE
KTYLIPFYQQKIYFLTNEKVSQLTCDKFNRTNLTQARKN
>Mature_519_residues
MNFKKIKKSHQLLILGVVFVLLFVGLVIYFWPRNDSQKDSTNKNVLKISLLNDITGIDVGDKSHTQIANGDRLFYAIHQT
LLISDENSNLHPQLATNWKHDATNKKVIDFNLRDDVFFHNGKKFGAEDVKFSFERAKQKGHDEYENIEKIEVLDNYKLRI
TLKSLPVYFWEPLSRLRILSKETLQEVQNQGEEALQKALRVGAGPYKLVNWVPQEKIELELNEVYYDKEVIKDSCKKIVF
EIIKDIDTALLKLKEGSLDAIFDYHVNKLENTKQEKGIKIVANEACKCSYLFLNCTKLDLEKRQLVARTINIPKIIQDLN
LEVKELKSYVPEGSHGHNPSLSYVYQENNFQDVKNKISGLSDKRLFLGFSQKESPEVMKKIVEQLTSAGFEVATESPEFT
GFLKMIQKSKYDMAFFSDMHEMPYGHKSMFDIVVPGGQDSDYTHIQGDSELENLLKEVQTEENKEKYDNKVQRLQQIFHE
KTYLIPFYQQKIYFLTNEKVSQLTCDKFNRTNLTQARKN

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=433, Percent_Identity=21.7090069284065, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60295; Mature: 60295

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFKKIKKSHQLLILGVVFVLLFVGLVIYFWPRNDSQKDSTNKNVLKISLLNDITGIDVG
CCHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCC
DKSHTQIANGDRLFYAIHQTLLISDENSNLHPQLATNWKHDATNKKVIDFNLRDDVFFHN
CCCCCEECCCCEEEEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCEEEEC
GKKFGAEDVKFSFERAKQKGHDEYENIEKIEVLDNYKLRITLKSLPVYFWEPLSRLRILS
CCCCCCHHHHHHHHHHHHCCCHHHHCCHHEEEECCCEEEEEEECCCCHHHHHHHHHHHHH
KETLQEVQNQGEEALQKALRVGAGPYKLVNWVPQEKIELELNEVYYDKEVIKDSCKKIVF
HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCCCHHHEEEHHHHHHHHHHHHHHHHHHHH
EIIKDIDTALLKLKEGSLDAIFDYHVNKLENTKQEKGIKIVANEACKCSYLFLNCTKLDL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCEEEEECCCCEEEEEEEEEECCCH
EKRQLVARTINIPKIIQDLNLEVKELKSYVPEGSHGHNPSLSYVYQENNFQDVKNKISGL
HHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHCCC
SDKRLFLGFSQKESPEVMKKIVEQLTSAGFEVATESPEFTGFLKMIQKSKYDMAFFSDMH
CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHH
EMPYGHKSMFDIVVPGGQDSDYTHIQGDSELENLLKEVQTEENKEKYDNKVQRLQQIFHE
HCCCCCCCEEEEEECCCCCCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
KTYLIPFYQQKIYFLTNEKVSQLTCDKFNRTNLTQARKN
CCEEEEEECCEEEEEECCCHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure
MNFKKIKKSHQLLILGVVFVLLFVGLVIYFWPRNDSQKDSTNKNVLKISLLNDITGIDVG
CCHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCC
DKSHTQIANGDRLFYAIHQTLLISDENSNLHPQLATNWKHDATNKKVIDFNLRDDVFFHN
CCCCCEECCCCEEEEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCEEEEC
GKKFGAEDVKFSFERAKQKGHDEYENIEKIEVLDNYKLRITLKSLPVYFWEPLSRLRILS
CCCCCCHHHHHHHHHHHHCCCHHHHCCHHEEEECCCEEEEEEECCCCHHHHHHHHHHHHH
KETLQEVQNQGEEALQKALRVGAGPYKLVNWVPQEKIELELNEVYYDKEVIKDSCKKIVF
HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCCCHHHEEEHHHHHHHHHHHHHHHHHHHH
EIIKDIDTALLKLKEGSLDAIFDYHVNKLENTKQEKGIKIVANEACKCSYLFLNCTKLDL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCEEEEECCCCEEEEEEEEEECCCH
EKRQLVARTINIPKIIQDLNLEVKELKSYVPEGSHGHNPSLSYVYQENNFQDVKNKISGL
HHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHCCC
SDKRLFLGFSQKESPEVMKKIVEQLTSAGFEVATESPEFTGFLKMIQKSKYDMAFFSDMH
CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHH
EMPYGHKSMFDIVVPGGQDSDYTHIQGDSELENLLKEVQTEENKEKYDNKVQRLQQIFHE
HCCCCCCCEEEEEECCCCCCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
KTYLIPFYQQKIYFLTNEKVSQLTCDKFNRTNLTQARKN
CCEEEEEECCEEEEEECCCHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]