BacMap

Definition	Candidatus Phytoplasma australiense, complete genome.
Accession	NC_010544
Length	879,959

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The map label for this gene is oppF [H]

Identifier: 197294752

GI number: 197294752

Start: 735322

End: 735783

Strand: Reverse

Name: oppF [H]

Synonym: PAa_0718

Alternate gene names: 197294752

Gene position: 735783-735322 (Counterclockwise)

Preceding gene: 197294753

Following gene: 197294751

Centisome position: 83.62

GC content: 29.44

Gene sequence:

>462_bases
ATGATTGTTAAAGATTTAATTGAAGAAGGTTTGATTTGCCAAGGGATTAAAGATCAAGTATTAAGACAAAAGAAAGTTAA
CCAAATGATTCGTTTAGTAGACTTAAGACTAAGTGATTTATCTCGTTATCCTCATGAATTTTCAGGAGGACAAAAACAAA
GAATCGTCATTGCCAGAGCTTTAATCGTAACACCTACCATACTTATTGCAGACGAACCTATTTCAGCTTTGGATGCTTCT
ATTCAAGCCCAAATCTTTAATTTATTAAACGATTTAAAAAAACAATTAGGATTAACTATCATTTTTATTTCTCATGATTT
AGAAGTAGTTAGATATTTTTGTGATTCTTTAGCTGTAATGTACCAAGGCAATATAGTTGAGCAAGGTACTACAGAAGAAA
TATTTTCACACACAAAACATCCTTATACACAAAGCTTATTAAATGATTCTAATTTCAATTAA

Upstream 100 bases:

>100_bases
TTTTTGTAGTTTTAAAGAATAATTTTTTAAAACAAAAAATGTCTAAAAAACATCATCTCCCCAGATTTTTCAAAACCCAG
ATACAGCCTTAAATCCTAAA

Downstream 100 bases:

>100_bases
GATAATGTTTTTGATAATTTTTTAGTTAAAAAATAATTAATTCCTGAAAAATTTAGTTTTACTAAGTAAAATAAATAATA
AATTAAGATAAAATGAATAT

Product: ABC-type dipeptide/oligopeptide transport system, ATPase component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MIVKDLIEEGLICQGIKDQVLRQKKVNQMIRLVDLRLSDLSRYPHEFSGGQKQRIVIARALIVTPTILIADEPISALDAS
IQAQIFNLLNDLKKQLGLTIIFISHDLEVVRYFCDSLAVMYQGNIVEQGTTEEIFSHTKHPYTQSLLNDSNFN

Sequences:

>Translated_153_residues
MIVKDLIEEGLICQGIKDQVLRQKKVNQMIRLVDLRLSDLSRYPHEFSGGQKQRIVIARALIVTPTILIADEPISALDAS
IQAQIFNLLNDLKKQLGLTIIFISHDLEVVRYFCDSLAVMYQGNIVEQGTTEEIFSHTKHPYTQSLLNDSNFN
>Mature_153_residues
MIVKDLIEEGLICQGIKDQVLRQKKVNQMIRLVDLRLSDLSRYPHEFSGGQKQRIVIARALIVTPTILIADEPISALDAS
IQAQIFNLLNDLKKQLGLTIIFISHDLEVVRYFCDSLAVMYQGNIVEQGTTEEIFSHTKHPYTQSLLNDSNFN

Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG4608

COG function: function code E; ABC-type oligopeptide transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=106, Percent_Identity=41.5094339622642, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI66529005, Length=101, Percent_Identity=39.6039603960396, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI9961252, Length=89, Percent_Identity=47.1910112359551, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI156105685, Length=89, Percent_Identity=44.9438202247191, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI4505771, Length=89, Percent_Identity=47.1910112359551, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI9961250, Length=89, Percent_Identity=47.1910112359551, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI42741659, Length=104, Percent_Identity=42.3076923076923, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI21729873, Length=151, Percent_Identity=32.4503311258278, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI15149474, Length=151, Percent_Identity=32.4503311258278, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI21729876, Length=151, Percent_Identity=32.4503311258278, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI21536378, Length=97, Percent_Identity=40.2061855670103, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI148612844, Length=90, Percent_Identity=40, Blast_Score=64, Evalue=7e-11,
Organism=Homo sapiens, GI255708477, Length=90, Percent_Identity=40, Blast_Score=63, Evalue=9e-11,
Organism=Escherichia coli, GI1789962, Length=146, Percent_Identity=48.6301369863014, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1787500, Length=126, Percent_Identity=52.3809523809524, Blast_Score=142, Evalue=7e-36,
Organism=Escherichia coli, GI145693107, Length=131, Percent_Identity=46.5648854961832, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1788506, Length=146, Percent_Identity=45.2054794520548, Blast_Score=126, Evalue=5e-31,
Organism=Escherichia coli, GI1787758, Length=146, Percent_Identity=44.5205479452055, Blast_Score=125, Evalue=1e-30,
Organism=Escherichia coli, GI48994883, Length=106, Percent_Identity=52.8301886792453, Blast_Score=125, Evalue=1e-30,
Organism=Escherichia coli, GI1787759, Length=130, Percent_Identity=41.5384615384615, Blast_Score=119, Evalue=7e-29,
Organism=Escherichia coli, GI1786398, Length=134, Percent_Identity=43.2835820895522, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1789963, Length=135, Percent_Identity=41.4814814814815, Blast_Score=110, Evalue=3e-26,
Organism=Escherichia coli, GI1787547, Length=126, Percent_Identity=35.7142857142857, Blast_Score=104, Evalue=3e-24,
Organism=Escherichia coli, GI48994997, Length=113, Percent_Identity=43.3628318584071, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1787370, Length=130, Percent_Identity=37.6923076923077, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1787548, Length=105, Percent_Identity=40.9523809523809, Blast_Score=96, Evalue=8e-22,
Organism=Escherichia coli, GI1789891, Length=103, Percent_Identity=45.6310679611651, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1788761, Length=127, Percent_Identity=38.5826771653543, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1788644, Length=150, Percent_Identity=30, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789890, Length=109, Percent_Identity=41.2844036697248, Blast_Score=91, Evalue=3e-20,
Organism=Escherichia coli, GI1789032, Length=147, Percent_Identity=36.734693877551, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1788225, Length=148, Percent_Identity=31.7567567567568, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081791, Length=127, Percent_Identity=33.0708661417323, Blast_Score=88, Evalue=2e-19,
Organism=Escherichia coli, GI1787089, Length=130, Percent_Identity=40.7692307692308, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI87081709, Length=152, Percent_Identity=29.6052631578947, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1790467, Length=144, Percent_Identity=31.25, Blast_Score=86, Evalue=9e-19,
Organism=Escherichia coli, GI1789672, Length=107, Percent_Identity=36.4485981308411, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787712, Length=151, Percent_Identity=31.1258278145695, Blast_Score=85, Evalue=2e-18,
Organism=Escherichia coli, GI1788450, Length=129, Percent_Identity=28.6821705426357, Blast_Score=84, Evalue=3e-18,
Organism=Escherichia coli, GI1787029, Length=104, Percent_Identity=35.5769230769231, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082267, Length=154, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=4e-16,
Organism=Escherichia coli, GI1786253, Length=122, Percent_Identity=32.7868852459016, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1786563, Length=121, Percent_Identity=36.3636363636364, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1786872, Length=131, Percent_Identity=28.2442748091603, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790739, Length=91, Percent_Identity=37.3626373626374, Blast_Score=73, Evalue=6e-15,
Organism=Escherichia coli, GI1786345, Length=113, Percent_Identity=35.3982300884956, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1790190, Length=111, Percent_Identity=32.4324324324324, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787164, Length=83, Percent_Identity=37.3493975903614, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1790162, Length=100, Percent_Identity=33, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI87081834, Length=74, Percent_Identity=40.5405405405405, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1786319, Length=93, Percent_Identity=34.4086021505376, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1787792, Length=102, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1790544, Length=106, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=5e-13,
Organism=Escherichia coli, GI1786703, Length=89, Percent_Identity=35.9550561797753, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1788165, Length=94, Percent_Identity=31.9148936170213, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789991, Length=120, Percent_Identity=31.6666666666667, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1786803, Length=90, Percent_Identity=36.6666666666667, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787112, Length=124, Percent_Identity=30.6451612903226, Blast_Score=63, Evalue=9e-12,
Organism=Escherichia coli, GI1787105, Length=93, Percent_Identity=36.5591397849462, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=98, Percent_Identity=40.8163265306122, Blast_Score=60, Evalue=5e-11,
Organism=Escherichia coli, GI1790525, Length=113, Percent_Identity=26.5486725663717, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=97, Percent_Identity=44.3298969072165, Blast_Score=76, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=123, Percent_Identity=40.650406504065, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=91, Percent_Identity=45.0549450549451, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=92, Percent_Identity=44.5652173913043, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193208177, Length=108, Percent_Identity=37.962962962963, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=120, Percent_Identity=32.5, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=89, Percent_Identity=41.5730337078652, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=123, Percent_Identity=34.1463414634146, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=89, Percent_Identity=41.5730337078652, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=89, Percent_Identity=44.9438202247191, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=89, Percent_Identity=43.8202247191011, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=89, Percent_Identity=43.8202247191011, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=91, Percent_Identity=42.8571428571429, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=89, Percent_Identity=43.8202247191011, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=89, Percent_Identity=42.6966292134831, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=103, Percent_Identity=27.1844660194175, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=90, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193202878, Length=133, Percent_Identity=24.0601503759398, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=97, Percent_Identity=41.2371134020619, Blast_Score=66, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17533971, Length=97, Percent_Identity=38.1443298969072, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17569081, Length=95, Percent_Identity=35.7894736842105, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=114, Percent_Identity=35.0877192982456, Blast_Score=62, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=108, Percent_Identity=41.6666666666667, Blast_Score=77, Evalue=1e-15,
Organism=Drosophila melanogaster, GI23397593, Length=90, Percent_Identity=47.7777777777778, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI85726357, Length=97, Percent_Identity=43.298969072165, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007184, Length=93, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221500365, Length=93, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363262, Length=106, Percent_Identity=41.5094339622642, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24653245, Length=106, Percent_Identity=41.5094339622642, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641565, Length=91, Percent_Identity=41.7582417582418, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17136662, Length=106, Percent_Identity=37.7358490566038, Blast_Score=66, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24659289, Length=116, Percent_Identity=39.6551724137931, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 17383; Mature: 17383

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKDLIEEGLICQGIKDQVLRQKKVNQMIRLVDLRLSDLSRYPHEFSGGQKQRIVIARA
CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHH
LIVTPTILIADEPISALDASIQAQIFNLLNDLKKQLGLTIIFISHDLEVVRYFCDSLAVM
HHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHH
YQGNIVEQGTTEEIFSHTKHPYTQSLLNDSNFN
HCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MIVKDLIEEGLICQGIKDQVLRQKKVNQMIRLVDLRLSDLSRYPHEFSGGQKQRIVIARA
CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHH
LIVTPTILIADEPISALDASIQAQIFNLLNDLKKQLGLTIIFISHDLEVVRYFCDSLAVM
HHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHH
YQGNIVEQGTTEEIFSHTKHPYTQSLLNDSNFN
HCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12397186 [H]