| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is uvrA [H]
Identifier: 197294733
GI number: 197294733
Start: 712098
End: 714923
Strand: Direct
Name: uvrA [H]
Synonym: PAa_0699
Alternate gene names: 197294733
Gene position: 712098-714923 (Clockwise)
Preceding gene: 197294724
Following gene: 197294734
Centisome position: 80.92
GC content: 31.28
Gene sequence:
>2826_bases ATGAAAAATCAAGAATTTATTAAAGTCCGCGGTGCGCGACAAAACAATTTAAAAAACATTAATATTGATATTCCCAAAAA TAAATTTGTAGTTATTACAGGTTTATCCGGTTCTGGGAAATCTTCTTTGGCTTTTGATACTTTATATCAAGAAGGAAAAA GAAGATATGTAGAATCATTAAGTGCTTATGCTAGACAATTTTTAGGTGGTTTTGAAAAACCAGATGTAGATAGTATTGAA GGATTAAGTCCTTCTATTAGTATTGATCAAAAAACAACTTCCCATAATCCTCGTTCCACCGTGGGAACTATTACAGAAAT TTATGATTATTTAAGGGTTGTTTATGCTAATGTCAGCGTTCCTTTTCATCCTTCCAAAAACGTTGCTTTAGAAAAGCAAA CAATTGAACAAATGATTCAAAAAATCAATCAATCTTTTCCCAAAGGTCACACAATTGTAATTTTGGCTCCCATAATTGAA AAACAAAAAGGGACTCATCAAAAAACTTTTTTAAAATTATTTCAAGATGGCTTTCATCGCGTTATGGTGAATGAAAAAAT TTATTTAATTGATGAAGTTCCTGATTTAGAACAAAAGAAAAGTCATAGCATTTATGTAGTTGTTGACCGCATAGAAGTTA ATGATGTCAACCAAAATAGAATTTTTGAAGCCCTAGAACAAGCCCTAAACTTAACTAATAGCAAAGTTTTTGTCAAAAGT GTTGATAACCTTCAAAACGACTCCTCTCAAAAACTTCCTTTTTTAAAACTCAATCGTAATTATCATTTAGAAGGTGTTGA TGTAGACATTCCTACACGCGAACCAAGGCTTTTTTCTTTTAATACTCCTGTGGGTGCTTGTCTTAGTTGTAAAGGAATCG GATTCCAAACAGAAGAAAATGGTTTTTTACCTTTAGACAAAACTTTAAATGAATTAATTATACAAATTTTCCAAAATGTT GACCCTCAAGATACTTTTATTTATCAAAAGCAAATTTTAATCAATTTGTGTAATCATTATAAAATTGATATGGATACACC TTTATTAGATTTAAAAGGTAAAATCATAGATAGTATTTTTAATGGTTTATCATCGAAATATACAAGACACAAAACATTAG ATCAAGAAGTATTTTGGCATCAAGGTCATGTTTTTGAAGGTCTTTTGGGAATTTTCAAAATATATCGCAAAAATAATCAA ATGGATACAAATTGTTTCGATTGTAAAGGCAAAAGATTAAATCCAGGGGCTTTACTTTTTAAACTGAACGGCAAAAACAT TTATGAATTAACGAATTTATCAATTAATGACATGTTGATTTTTTTTGAAAACTTAGTTTTAGGCAAAGAAGAGGCAAAAA TCATCCGTTTGGCTTTAAAAGAAATCACTCATCGTCTTACTTTTTTAAAAGAAATCGGGTTGGGTTATTTAACTTTAACA CGTAATGGAGCAACTTTATCAGGAGGAGAAGCTCAAAGAATCCGCTTGGCTACCCAAATTGGTTCTAAATTATCAGGAGT TTTATACGTTTTAGATGAACCTTCCATTGGTCTACATCAAAAAGATAACGATTTGTTGATTAATTCTTTAAAAAAAATGA GAGATTTAGGAAATTCCTTAATAGTTGTCGAACATGATCACGATACTATGTTGGCCTCTGATTATTTAATTGATATCGGT CCCAAAGCAGGTATCCAAGGAGGAAACTTGCAAGCAGCAGGAACCCCTAAAGAAGTCATGCAAAACCCTAATAGCTTAAC AGGTAAATATTTATCTAACAAAATAACAATCAATACTCCTTCTGTTAGAAGAAAAGGAAATGGCAAAAAAATTTGGGTTA AAAACGCTTCTAAAAATAACTTAAAAAACATTAATACTTTTTTTCCTATGGAACAATTAGTGGTAGTTACAGGAGTTTCT GGTTCTGGGAAATCAACTTTAGTTAATGATGTTTTGTTAAGCGGCTTAAGAGAAAAAGGATTGTTGAAAAACAAAAATAG TTACCAAAAAAATCCTAATATAGTTGATGATGCAAATTGTGTCACCAAAATAGTTGAAATTTCTCAAGCAGCTATCGGAA GAATTCCTAGAAGTAACCCTGTAACTTACACTGGTATTTTTGATGAAATTAGAGATTTATATACCAAAACTGAAGAAGCT AAAATGAGGGGTTACCAAAAAGGACGCTTTTCTTTTAATGTGAAAGGCGGTAGATGTCCGGTTTGTACAGGTGACGGGGT GAAAAAAATCTCCATGCATTTTTTACCTGATGTTTATGTAGTTTGTGAAAGTTGTAAAGGAACGAGATACCACCAAGAAA CTCTCAGCATCAAATATAAAAATAAAAATATCGCTCAAGTACTTGATTTAACTGTTGATGAAGGAGTAATTTTTTTTCAA AACCACCCCAAAATTAAAAATCAATTAGAAATCTTGCAAAATGTAGGACTTGGTTATGTTAAAATGGGGCAACCAGCAAC AACTTTATCAGGAGGAGAGGCTCAAAGGGTTAAATTAGCTAGTGAATTGCATAAAAAAGTCATTCCGGGTGCTTTATATA TTCTAGATGAGCCTACAACTGGATTGCATTCAGATGACGTAAGACAGTTAATTAAAACTTTACATCACATGGTGGATCAA AAAGCAACTATTGTTGTGATTGAACATAATTTAGATGTTATTAAAAACGCTGATTATATTATTGATTTAGGTCCTGAAGG AGGAAATCAAGGCGGGTATATAATCGCCCAAGGAACTCCTGAAACAATTAGTGAAAATAAAAACAGTTATACAGGCAAAT ATTTAAAAAAAATTTTGGCACATTAA
Upstream 100 bases:
>100_bases AACTGAAAAAATGCTTCGGTTGTTAAATGTTAAATATTTACTTTTGTATAGTTTTTAGGTTTACAGTTCAAATTAGATTG AAAAGGAAATAATCAAACAA
Downstream 100 bases:
>100_bases AAAAACTTGATATTAATTGATTTAAAGTGATAAAAAAACTTTTAATTTTTCGGTTATTTGTAAAATTTATCACCCCAATT TTTTTAATTCACGATCTCTT
Product: Excinuclease ATPase subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 941; Mature: 941
Protein sequence:
>941_residues MKNQEFIKVRGARQNNLKNINIDIPKNKFVVITGLSGSGKSSLAFDTLYQEGKRRYVESLSAYARQFLGGFEKPDVDSIE GLSPSISIDQKTTSHNPRSTVGTITEIYDYLRVVYANVSVPFHPSKNVALEKQTIEQMIQKINQSFPKGHTIVILAPIIE KQKGTHQKTFLKLFQDGFHRVMVNEKIYLIDEVPDLEQKKSHSIYVVVDRIEVNDVNQNRIFEALEQALNLTNSKVFVKS VDNLQNDSSQKLPFLKLNRNYHLEGVDVDIPTREPRLFSFNTPVGACLSCKGIGFQTEENGFLPLDKTLNELIIQIFQNV DPQDTFIYQKQILINLCNHYKIDMDTPLLDLKGKIIDSIFNGLSSKYTRHKTLDQEVFWHQGHVFEGLLGIFKIYRKNNQ MDTNCFDCKGKRLNPGALLFKLNGKNIYELTNLSINDMLIFFENLVLGKEEAKIIRLALKEITHRLTFLKEIGLGYLTLT RNGATLSGGEAQRIRLATQIGSKLSGVLYVLDEPSIGLHQKDNDLLINSLKKMRDLGNSLIVVEHDHDTMLASDYLIDIG PKAGIQGGNLQAAGTPKEVMQNPNSLTGKYLSNKITINTPSVRRKGNGKKIWVKNASKNNLKNINTFFPMEQLVVVTGVS GSGKSTLVNDVLLSGLREKGLLKNKNSYQKNPNIVDDANCVTKIVEISQAAIGRIPRSNPVTYTGIFDEIRDLYTKTEEA KMRGYQKGRFSFNVKGGRCPVCTGDGVKKISMHFLPDVYVVCESCKGTRYHQETLSIKYKNKNIAQVLDLTVDEGVIFFQ NHPKIKNQLEILQNVGLGYVKMGQPATTLSGGEAQRVKLASELHKKVIPGALYILDEPTTGLHSDDVRQLIKTLHHMVDQ KATIVVIEHNLDVIKNADYIIDLGPEGGNQGGYIIAQGTPETISENKNSYTGKYLKKILAH
Sequences:
>Translated_941_residues MKNQEFIKVRGARQNNLKNINIDIPKNKFVVITGLSGSGKSSLAFDTLYQEGKRRYVESLSAYARQFLGGFEKPDVDSIE GLSPSISIDQKTTSHNPRSTVGTITEIYDYLRVVYANVSVPFHPSKNVALEKQTIEQMIQKINQSFPKGHTIVILAPIIE KQKGTHQKTFLKLFQDGFHRVMVNEKIYLIDEVPDLEQKKSHSIYVVVDRIEVNDVNQNRIFEALEQALNLTNSKVFVKS VDNLQNDSSQKLPFLKLNRNYHLEGVDVDIPTREPRLFSFNTPVGACLSCKGIGFQTEENGFLPLDKTLNELIIQIFQNV DPQDTFIYQKQILINLCNHYKIDMDTPLLDLKGKIIDSIFNGLSSKYTRHKTLDQEVFWHQGHVFEGLLGIFKIYRKNNQ MDTNCFDCKGKRLNPGALLFKLNGKNIYELTNLSINDMLIFFENLVLGKEEAKIIRLALKEITHRLTFLKEIGLGYLTLT RNGATLSGGEAQRIRLATQIGSKLSGVLYVLDEPSIGLHQKDNDLLINSLKKMRDLGNSLIVVEHDHDTMLASDYLIDIG PKAGIQGGNLQAAGTPKEVMQNPNSLTGKYLSNKITINTPSVRRKGNGKKIWVKNASKNNLKNINTFFPMEQLVVVTGVS GSGKSTLVNDVLLSGLREKGLLKNKNSYQKNPNIVDDANCVTKIVEISQAAIGRIPRSNPVTYTGIFDEIRDLYTKTEEA KMRGYQKGRFSFNVKGGRCPVCTGDGVKKISMHFLPDVYVVCESCKGTRYHQETLSIKYKNKNIAQVLDLTVDEGVIFFQ NHPKIKNQLEILQNVGLGYVKMGQPATTLSGGEAQRVKLASELHKKVIPGALYILDEPTTGLHSDDVRQLIKTLHHMVDQ KATIVVIEHNLDVIKNADYIIDLGPEGGNQGGYIIAQGTPETISENKNSYTGKYLKKILAH >Mature_941_residues MKNQEFIKVRGARQNNLKNINIDIPKNKFVVITGLSGSGKSSLAFDTLYQEGKRRYVESLSAYARQFLGGFEKPDVDSIE GLSPSISIDQKTTSHNPRSTVGTITEIYDYLRVVYANVSVPFHPSKNVALEKQTIEQMIQKINQSFPKGHTIVILAPIIE KQKGTHQKTFLKLFQDGFHRVMVNEKIYLIDEVPDLEQKKSHSIYVVVDRIEVNDVNQNRIFEALEQALNLTNSKVFVKS VDNLQNDSSQKLPFLKLNRNYHLEGVDVDIPTREPRLFSFNTPVGACLSCKGIGFQTEENGFLPLDKTLNELIIQIFQNV DPQDTFIYQKQILINLCNHYKIDMDTPLLDLKGKIIDSIFNGLSSKYTRHKTLDQEVFWHQGHVFEGLLGIFKIYRKNNQ MDTNCFDCKGKRLNPGALLFKLNGKNIYELTNLSINDMLIFFENLVLGKEEAKIIRLALKEITHRLTFLKEIGLGYLTLT RNGATLSGGEAQRIRLATQIGSKLSGVLYVLDEPSIGLHQKDNDLLINSLKKMRDLGNSLIVVEHDHDTMLASDYLIDIG PKAGIQGGNLQAAGTPKEVMQNPNSLTGKYLSNKITINTPSVRRKGNGKKIWVKNASKNNLKNINTFFPMEQLVVVTGVS GSGKSTLVNDVLLSGLREKGLLKNKNSYQKNPNIVDDANCVTKIVEISQAAIGRIPRSNPVTYTGIFDEIRDLYTKTEEA KMRGYQKGRFSFNVKGGRCPVCTGDGVKKISMHFLPDVYVVCESCKGTRYHQETLSIKYKNKNIAQVLDLTVDEGVIFFQ NHPKIKNQLEILQNVGLGYVKMGQPATTLSGGEAQRVKLASELHKKVIPGALYILDEPTTGLHSDDVRQLIKTLHHMVDQ KATIVVIEHNLDVIKNADYIIDLGPEGGNQGGYIIAQGTPETISENKNSYTGKYLKKILAH
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=954, Percent_Identity=47.2746331236897, Blast_Score=836, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 105551; Mature: 105551
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNQEFIKVRGARQNNLKNINIDIPKNKFVVITGLSGSGKSSLAFDTLYQEGKRRYVESL CCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH SAYARQFLGGFEKPDVDSIEGLSPSISIDQKTTSHNPRSTVGTITEIYDYLRVVYANVSV HHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC PFHPSKNVALEKQTIEQMIQKINQSFPKGHTIVILAPIIEKQKGTHQKTFLKLFQDGFHR CCCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEEEECCHHCCCCCHHHHHHHHHHHCHHE VMVNEKIYLIDEVPDLEQKKSHSIYVVVDRIEVNDVNQNRIFEALEQALNLTNSKVFVKS EEECCEEEEEECCCCCHHHCCCEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEE VDNLQNDSSQKLPFLKLNRNYHLEGVDVDIPTREPRLFSFNTPVGACLSCKGIGFQTEEN HHHCCCCCCCCCCEEEECCCEEEEEEEEECCCCCCEEEEECCCCCHHEEECCCCCCCCCC GFLPLDKTLNELIIQIFQNVDPQDTFIYQKQILINLCNHYKIDMDTPLLDLKGKIIDSIF CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHH NGLSSKYTRHKTLDQEVFWHQGHVFEGLLGIFKIYRKNNQMDTNCFDCKGKRLNPGALLF HHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCEEEE KLNGKNIYELTNLSINDMLIFFENLVLGKEEAKIIRLALKEITHRLTFLKEIGLGYLTLT EECCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE RNGATLSGGEAQRIRLATQIGSKLSGVLYVLDEPSIGLHQKDNDLLINSLKKMRDLGNSL CCCCEECCCCHHHEEHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEE IVVEHDHDTMLASDYLIDIGPKAGIQGGNLQAAGTPKEVMQNPNSLTGKYLSNKITINTP EEEECCCCCEEECCEEEECCCCCCCCCCCEECCCCHHHHHCCCCCCCHHHHCCEEEEECC SVRRKGNGKKIWVKNASKNNLKNINTFFPMEQLVVVTGVSGSGKSTLVNDVLLSGLREKG CCCCCCCCCEEEEECCCCCCCCCCHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCC LLKNKNSYQKNPNIVDDANCVTKIVEISQAAIGRIPRSNPVTYTGIFDEIRDLYTKTEEA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHCCHHH KMRGYQKGRFSFNVKGGRCPVCTGDGVKKISMHFLPDVYVVCESCKGTRYHQETLSIKYK HHCCCCCCCEEEEECCCCCCEECCCCCHHHHHHHCCCHHHHHHCCCCCEEECEEEEEEEC NKNIAQVLDLTVDEGVIFFQNHPKIKNQLEILQNVGLGYVKMGQPATTLSGGEAQRVKLA CCCHHHHHHEEECCCEEEEECCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHH SELHKKVIPGALYILDEPTTGLHSDDVRQLIKTLHHMVDQKATIVVIEHNLDVIKNADYI HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCCEE IDLGPEGGNQGGYIIAQGTPETISENKNSYTGKYLKKILAH EEECCCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHCC >Mature Secondary Structure MKNQEFIKVRGARQNNLKNINIDIPKNKFVVITGLSGSGKSSLAFDTLYQEGKRRYVESL CCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH SAYARQFLGGFEKPDVDSIEGLSPSISIDQKTTSHNPRSTVGTITEIYDYLRVVYANVSV HHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC PFHPSKNVALEKQTIEQMIQKINQSFPKGHTIVILAPIIEKQKGTHQKTFLKLFQDGFHR CCCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEEEECCHHCCCCCHHHHHHHHHHHCHHE VMVNEKIYLIDEVPDLEQKKSHSIYVVVDRIEVNDVNQNRIFEALEQALNLTNSKVFVKS EEECCEEEEEECCCCCHHHCCCEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEE VDNLQNDSSQKLPFLKLNRNYHLEGVDVDIPTREPRLFSFNTPVGACLSCKGIGFQTEEN HHHCCCCCCCCCCEEEECCCEEEEEEEEECCCCCCEEEEECCCCCHHEEECCCCCCCCCC GFLPLDKTLNELIIQIFQNVDPQDTFIYQKQILINLCNHYKIDMDTPLLDLKGKIIDSIF CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHH NGLSSKYTRHKTLDQEVFWHQGHVFEGLLGIFKIYRKNNQMDTNCFDCKGKRLNPGALLF HHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCEEEE KLNGKNIYELTNLSINDMLIFFENLVLGKEEAKIIRLALKEITHRLTFLKEIGLGYLTLT EECCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE RNGATLSGGEAQRIRLATQIGSKLSGVLYVLDEPSIGLHQKDNDLLINSLKKMRDLGNSL CCCCEECCCCHHHEEHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEE IVVEHDHDTMLASDYLIDIGPKAGIQGGNLQAAGTPKEVMQNPNSLTGKYLSNKITINTP EEEECCCCCEEECCEEEECCCCCCCCCCCEECCCCHHHHHCCCCCCCHHHHCCEEEEECC SVRRKGNGKKIWVKNASKNNLKNINTFFPMEQLVVVTGVSGSGKSTLVNDVLLSGLREKG CCCCCCCCCEEEEECCCCCCCCCCHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCC LLKNKNSYQKNPNIVDDANCVTKIVEISQAAIGRIPRSNPVTYTGIFDEIRDLYTKTEEA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHCCHHH KMRGYQKGRFSFNVKGGRCPVCTGDGVKKISMHFLPDVYVVCESCKGTRYHQETLSIKYK HHCCCCCCCEEEEECCCCCCEECCCCCHHHHHHHCCCHHHHHHCCCCCEEECEEEEEEEC NKNIAQVLDLTVDEGVIFFQNHPKIKNQLEILQNVGLGYVKMGQPATTLSGGEAQRVKLA CCCHHHHHHEEECCCEEEEECCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHH SELHKKVIPGALYILDEPTTGLHSDDVRQLIKTLHHMVDQKATIVVIEHNLDVIKNADYI HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCCEE IDLGPEGGNQGGYIIAQGTPETISENKNSYTGKYLKKILAH EEECCCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]