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The map label for this gene is rbfA [H]

Identifier: 197294653

GI number: 197294653

Start: 604365

End: 604709

Strand: Direct

Name: rbfA [H]

Synonym: PAa_0609

Alternate gene names: 197294653

Gene position: 604365-604709 (Clockwise)

Preceding gene: 197294652

Following gene: 197294654

Centisome position: 68.68

GC content: 23.48

Gene sequence:

>345_bases
ATGACTGCAACAACAGCTGAAAGAATGGCAAGCGCTATTAAAAAAGAGTTAGTTTTAATTAATACAATTATTCAAGACGA
ACAAATAGGTTATATTAATTTAACAGATGTTCAAGTAACAAAAGATTTATCTTTTGCTAATGTTTATTACACTATTTTAA
GCGATTCTCCTGATATTTTAAAATTAGCTTCTAACGCAATTGAAGAAAATAAAGTTGTTATTAGGATGGAATTAGCTAAA
AAAATTAAAAATTTTAGAAAAATACCTGATTTAATTTTTAAATATGATAAATCTTTATCTTATGGACGTCATATAGAAAA
TATTTTAAAAGATATCAAGAAGTAA

Upstream 100 bases:

>100_bases
AACAAGGTTATGAATGTGGTATTTTGCTTGATAATTTTAATGATTTTATAATTAATGATATAATAGAAACATCTAAATTA
GACAAAATGGAGAATTGAAA

Downstream 100 bases:

>100_bases
TTTTTTAAAAATTTTTTATTTTTTCAAACTCCTGCATTAATTTTTTTAACAAATGATAATTTATTATTTATGATTTTTTC
TTTTTTTAAATTCTTTTATT

Product: Ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MTATTAERMASAIKKELVLINTIIQDEQIGYINLTDVQVTKDLSFANVYYTILSDSPDILKLASNAIEENKVVIRMELAK
KIKNFRKIPDLIFKYDKSLSYGRHIENILKDIKK

Sequences:

>Translated_114_residues
MTATTAERMASAIKKELVLINTIIQDEQIGYINLTDVQVTKDLSFANVYYTILSDSPDILKLASNAIEENKVVIRMELAK
KIKNFRKIPDLIFKYDKSLSYGRHIENILKDIKK
>Mature_113_residues
TATTAERMASAIKKELVLINTIIQDEQIGYINLTDVQVTKDLSFANVYYTILSDSPDILKLASNAIEENKVVIRMELAKK
IKNFRKIPDLIFKYDKSLSYGRHIENILKDIKK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13077; Mature: 12946

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATTAERMASAIKKELVLINTIIQDEQIGYINLTDVQVTKDLSFANVYYTILSDSPDIL
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCHHHHEEEEECCCCHHH
KLASNAIEENKVVIRMELAKKIKNFRKIPDLIFKYDKSLSYGRHIENILKDIKK
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TATTAERMASAIKKELVLINTIIQDEQIGYINLTDVQVTKDLSFANVYYTILSDSPDIL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCHHHHEEEEECCCCHHH
KLASNAIEENKVVIRMELAKKIKNFRKIPDLIFKYDKSLSYGRHIENILKDIKK
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA