Definition Candidatus Phytoplasma australiense, complete genome.
Accession NC_010544
Length 879,959

Click here to switch to the map view.

The map label for this gene is 197294481

Identifier: 197294481

GI number: 197294481

Start: 412345

End: 412875

Strand: Direct

Name: 197294481

Synonym: PAa_0410

Alternate gene names: NA

Gene position: 412345-412875 (Clockwise)

Preceding gene: 197294459

Following gene: 197294493

Centisome position: 46.86

GC content: 30.89

Gene sequence:

>531_bases
GTGGCTATTAATAATTATTTCGCTCACCAAAGACAAGAAAAAATTAAATTAATGAGCAAAAATGATGCCCCTTTATTTGA
AGTAAATAGAATCCGCGGTAACAATGAAGATAAAACCCTTATCCCTTTGCCGATGCCAAACTTAAATCCAAATAAATGTC
ACCATGTCGTTACTATTAATCATCAAGCAGTTATAAACGCAAATGGATTTGACGTTAGTGTTCCTTTATATCTAAAAATA
ACTCCAAAATATGACACTCATAATACTTTTTTTAATTCTGAAACACTCTTTAATTTAGAAATTAAAAATAATAACACACT
CTATGATGACACCAAACGTCAACAAATGGTTATCAATGAAAATGGCAAAGGCGTTATCAATGTTCAAATTAAATTAGAAC
AAAACGACTTTGTTGAAGTAACAAATCCACTCTTAACCTTAGTTCTTGACTATGAATTAGTTGATAAAGATGGAAACGCA
CTTAGCGGTAGTGGCACCACTGTTGAAAACAAAATTAAGCAATTAGCTTAA

Upstream 100 bases:

>100_bases
GAGGTAAATAATCATGAAAAAACAATCCACAAACCAAAAAAACAAAATTATAATTGTTCTGTCAATTTTAATTTGTTCTT
TTTTTGCCATTAGTTCTATT

Downstream 100 bases:

>100_bases
TTAAAAGAAATAAGACTAAGTTTTTTAACTTAGTCTTATTTGAGAAAGGAAATAAATTATGGAAATCAAAAACCAACCTT
CCGCCAAACCACTTTTCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MAINNYFAHQRQEKIKLMSKNDAPLFEVNRIRGNNEDKTLIPLPMPNLNPNKCHHVVTINHQAVINANGFDVSVPLYLKI
TPKYDTHNTFFNSETLFNLEIKNNNTLYDDTKRQQMVINENGKGVINVQIKLEQNDFVEVTNPLLTLVLDYELVDKDGNA
LSGSGTTVENKIKQLA

Sequences:

>Translated_176_residues
MAINNYFAHQRQEKIKLMSKNDAPLFEVNRIRGNNEDKTLIPLPMPNLNPNKCHHVVTINHQAVINANGFDVSVPLYLKI
TPKYDTHNTFFNSETLFNLEIKNNNTLYDDTKRQQMVINENGKGVINVQIKLEQNDFVEVTNPLLTLVLDYELVDKDGNA
LSGSGTTVENKIKQLA
>Mature_175_residues
AINNYFAHQRQEKIKLMSKNDAPLFEVNRIRGNNEDKTLIPLPMPNLNPNKCHHVVTINHQAVINANGFDVSVPLYLKIT
PKYDTHNTFFNSETLFNLEIKNNNTLYDDTKRQQMVINENGKGVINVQIKLEQNDFVEVTNPLLTLVLDYELVDKDGNAL
SGSGTTVENKIKQLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20022; Mature: 19891

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINNYFAHQRQEKIKLMSKNDAPLFEVNRIRGNNEDKTLIPLPMPNLNPNKCHHVVTIN
CCCCCHHHHHHHHHEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEEC
HQAVINANGFDVSVPLYLKITPKYDTHNTFFNSETLFNLEIKNNNTLYDDTKRQQMVINE
CEEEEECCCCEEEEEEEEEEECCCCCCCEEECCCEEEEEEECCCCCEECCCCCEEEEEEC
NGKGVINVQIKLEQNDFVEVTNPLLTLVLDYELVDKDGNALSGSGTTVENKIKQLA
CCCEEEEEEEEECCCCEEEECCCEEEEEEEEEEECCCCCEECCCCCCHHHHHHHCC
>Mature Secondary Structure 
AINNYFAHQRQEKIKLMSKNDAPLFEVNRIRGNNEDKTLIPLPMPNLNPNKCHHVVTIN
CCCCHHHHHHHHHEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEEC
HQAVINANGFDVSVPLYLKITPKYDTHNTFFNSETLFNLEIKNNNTLYDDTKRQQMVINE
CEEEEECCCCEEEEEEEEEEECCCCCCCEEECCCEEEEEEECCCCCEECCCCCEEEEEEC
NGKGVINVQIKLEQNDFVEVTNPLLTLVLDYELVDKDGNALSGSGTTVENKIKQLA
CCCEEEEEEEEECCCCEEEECCCEEEEEEEEEEECCCCCEECCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA