| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
Click here to switch to the map view.
The map label for this gene is 197294393
Identifier: 197294393
GI number: 197294393
Start: 330518
End: 331123
Strand: Reverse
Name: 197294393
Synonym: PAa_0303
Alternate gene names: NA
Gene position: 331123-330518 (Counterclockwise)
Preceding gene: 197294394
Following gene: 197294392
Centisome position: 37.63
GC content: 32.01
Gene sequence:
>606_bases ATGCTAACTAACCAAGAATTAAACAACATCAAACAATTTAAACAAAACATAAAATCCGTTGACATTCTCAAACAAATTTT TGATAAATCTACCTTCACACTCCCAATCAACGAATATATGAAAACCAATCACACTCAATTAAATCATTATTTTGAAACAA ATAACTTCAATTGCCAATCTCAAAAATCCCTTCGCGGAAAAATTAACGAATTCTTTATTTTGCTTTATTTCCGATATTAC GGCATCACCAATTTATATCCACAGGCATATTTATTCTTCATCCCCGATATCAAATTTGATTTAGTGTTATTCACCCACAC CAAACGAATAATCGCTTTCAATTTCAAAACATGCCTCCGCGACCGCTACAAACAAGCCATCATCGAAGGACAACAACTAA AAAAACTAGACACTCGCTTTGAGTACTACCTCCTAACAAACCACACCTCGGAAACTCAAAGACTCAATGAAAAACTCAAA CAAGGCAAAGTACAAAGCATCAATAAAGTAATTAACCTATTTTCACCAAACAGCCACTCATTTTTTCAAAACTTTTCCCG AAGACAATTTATTACCTTTCCAAATATAAATTTAATTAAAAAATAA
Upstream 100 bases:
>100_bases AAACCACCCACAGACCCTTTTAAGGGTCTTTTCTTTTTTTACCAACCAAACCAACACAACAACGCTCGGCGAAAAAAACA ATTCATAGGAGAAAACAAAT
Downstream 100 bases:
>100_bases AAAGAGATTTAAAAAAATGTTAACCAACGAACAAAAAGCCCTAAACCAAATTGTCAATTACATCCATCAAGAAAAATGGA AACATTTAGAATTTTATTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MLTNQELNNIKQFKQNIKSVDILKQIFDKSTFTLPINEYMKTNHTQLNHYFETNNFNCQSQKSLRGKINEFFILLYFRYY GITNLYPQAYLFFIPDIKFDLVLFTHTKRIIAFNFKTCLRDRYKQAIIEGQQLKKLDTRFEYYLLTNHTSETQRLNEKLK QGKVQSINKVINLFSPNSHSFFQNFSRRQFITFPNINLIKK
Sequences:
>Translated_201_residues MLTNQELNNIKQFKQNIKSVDILKQIFDKSTFTLPINEYMKTNHTQLNHYFETNNFNCQSQKSLRGKINEFFILLYFRYY GITNLYPQAYLFFIPDIKFDLVLFTHTKRIIAFNFKTCLRDRYKQAIIEGQQLKKLDTRFEYYLLTNHTSETQRLNEKLK QGKVQSINKVINLFSPNSHSFFQNFSRRQFITFPNINLIKK >Mature_201_residues MLTNQELNNIKQFKQNIKSVDILKQIFDKSTFTLPINEYMKTNHTQLNHYFETNNFNCQSQKSLRGKINEFFILLYFRYY GITNLYPQAYLFFIPDIKFDLVLFTHTKRIIAFNFKTCLRDRYKQAIIEGQQLKKLDTRFEYYLLTNHTSETQRLNEKLK QGKVQSINKVINLFSPNSHSFFQNFSRRQFITFPNINLIKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24271; Mature: 24271
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTNQELNNIKQFKQNIKSVDILKQIFDKSTFTLPINEYMKTNHTQLNHYFETNNFNCQS CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCHHHHEEEECCCCCCCC QKSLRGKINEFFILLYFRYYGITNLYPQAYLFFIPDIKFDLVLFTHTKRIIAFNFKTCLR HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEECCEEEEEHHHHHHH DRYKQAIIEGQQLKKLDTRFEYYLLTNHTSETQRLNEKLKQGKVQSINKVINLFSPNSHS HHHHHHHHCHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH FFQNFSRRQFITFPNINLIKK HHHHCCCCEEEECCCCEEECC >Mature Secondary Structure MLTNQELNNIKQFKQNIKSVDILKQIFDKSTFTLPINEYMKTNHTQLNHYFETNNFNCQS CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCHHHHEEEECCCCCCCC QKSLRGKINEFFILLYFRYYGITNLYPQAYLFFIPDIKFDLVLFTHTKRIIAFNFKTCLR HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEECCEEEEEHHHHHHH DRYKQAIIEGQQLKKLDTRFEYYLLTNHTSETQRLNEKLKQGKVQSINKVINLFSPNSHS HHHHHHHHCHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH FFQNFSRRQFITFPNINLIKK HHHHCCCCEEEECCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA