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The map label for this gene is lpsA [H]

Identifier: 134302634

GI number: 134302634

Start: 1705895

End: 1706863

Strand: Reverse

Name: lpsA [H]

Synonym: FTW_1815

Alternate gene names: 134302634

Gene position: 1706863-1705895 (Counterclockwise)

Preceding gene: 134302640

Following gene: 134302633

Centisome position: 89.91

GC content: 28.17

Gene sequence:

>969_bases
ATGAAAAAGTTAAAGTATTACATAAAAAATATTAGCAGAACTATTATACCTAAAAAGTTTTTTGAGCTAAGTTTGGAACA
TAAACTGAAAAGCATCGCAAAATTTGACAAAGAATATATCGAGTATAGAGTTAATTACTATAATAGGCTATCTAAACCAT
TTATGCTACAAAATAGCTCTAATTGGAAAAATTTTAAAAGAAACACTCCAGTATTTGACATTATTGACCATAGTCTTGTC
AGAAAATCTATTAATTCCTCATACTTTTATGATTTTAAAGAGTTTTTAGTATACTTTAATAAAACCGATAGTTTTGCTAC
AGCTTTTTATGATCTTACTAAAATACCCCAACAACCAACTTTTGTAAAAAGTAGACCAATAGCTGATGATAATCAAAACT
CTATTATTCTAAAGCTTGATAAACTACGACACTTTAGCCTTTTTGAAGACAATCAAAAATTTGAAGATAAACTTAATATG
GCGGTCTTTAGAGGAGCTTGTCATCAACCTACTCGACAATATTTCATAGAAAATTATTATAACTTACCTAATACAAATTT
TGGTGACACGCGTAAAGAATCAATTGGTCAACCATATAACAAAGGCTTTCTGAGCATACAAGACCAGCTTAAATATAAAT
ATATCGTTAGTATAGAGGGCTACGATGTTGCTACTAATCTTAAATGGATCATGAACTCAAATTCCCTTTGTTTTATGAAT
AAACCAAAATATGAAACGTGGTTTATGGAAGGTACCCTAATACCAAATCATCACTATGTATTATTAAAAGATGATTATTC
TGATCTTCAAGAGAAAATAGACTATTATAACAATCACCCCGAAAAAGCTCTTAAAATAATTAAAAATGCAAACGAATATG
TAAATCAATTCAAAAATAAACAAAGAGAAGAACTGATTTCTTTACTTGTTATGAAGAAGTATTTTGGTTTAAATAAAACG
TCTCACTAG

Upstream 100 bases:

>100_bases
CTATAAAATAGTATTATCAAGTTCCTATAATACACTAAGCTTAATCATCATGCTAAAATAAGAATGTCTTTATTTTTTAA
ATATTAGGTACATATAAAAT

Downstream 100 bases:

>100_bases
AGCTTAATTTTATAAGAATGTTTTCTGGATTTGATAAGATTTTTCTCTACAGCTTTAGAGTTGATTTACTTATTTAACTG
AAATATTTTTTATTCATAGA

Product: lipopolysaccharide core biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKKLKYYIKNISRTIIPKKFFELSLEHKLKSIAKFDKEYIEYRVNYYNRLSKPFMLQNSSNWKNFKRNTPVFDIIDHSLV
RKSINSSYFYDFKEFLVYFNKTDSFATAFYDLTKIPQQPTFVKSRPIADDNQNSIILKLDKLRHFSLFEDNQKFEDKLNM
AVFRGACHQPTRQYFIENYYNLPNTNFGDTRKESIGQPYNKGFLSIQDQLKYKYIVSIEGYDVATNLKWIMNSNSLCFMN
KPKYETWFMEGTLIPNHHYVLLKDDYSDLQEKIDYYNNHPEKALKIIKNANEYVNQFKNKQREELISLLVMKKYFGLNKT
SH

Sequences:

>Translated_322_residues
MKKLKYYIKNISRTIIPKKFFELSLEHKLKSIAKFDKEYIEYRVNYYNRLSKPFMLQNSSNWKNFKRNTPVFDIIDHSLV
RKSINSSYFYDFKEFLVYFNKTDSFATAFYDLTKIPQQPTFVKSRPIADDNQNSIILKLDKLRHFSLFEDNQKFEDKLNM
AVFRGACHQPTRQYFIENYYNLPNTNFGDTRKESIGQPYNKGFLSIQDQLKYKYIVSIEGYDVATNLKWIMNSNSLCFMN
KPKYETWFMEGTLIPNHHYVLLKDDYSDLQEKIDYYNNHPEKALKIIKNANEYVNQFKNKQREELISLLVMKKYFGLNKT
SH
>Mature_322_residues
MKKLKYYIKNISRTIIPKKFFELSLEHKLKSIAKFDKEYIEYRVNYYNRLSKPFMLQNSSNWKNFKRNTPVFDIIDHSLV
RKSINSSYFYDFKEFLVYFNKTDSFATAFYDLTKIPQQPTFVKSRPIADDNQNSIILKLDKLRHFSLFEDNQKFEDKLNM
AVFRGACHQPTRQYFIENYYNLPNTNFGDTRKESIGQPYNKGFLSIQDQLKYKYIVSIEGYDVATNLKWIMNSNSLCFMN
KPKYETWFMEGTLIPNHHYVLLKDDYSDLQEKIDYYNNHPEKALKIIKNANEYVNQFKNKQREELISLLVMKKYFGLNKT
SH

Specific function: Involved in lipopolysaccharide core biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 90 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006598 [H]

Pfam domain/function: PF05686 DUF821 [H]

EC number: NA

Molecular weight: Translated: 38729; Mature: 38729

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLKYYIKNISRTIIPKKFFELSLEHKLKSIAKFDKEYIEYRVNYYNRLSKPFMLQNSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
NWKNFKRNTPVFDIIDHSLVRKSINSSYFYDFKEFLVYFNKTDSFATAFYDLTKIPQQPT
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
FVKSRPIADDNQNSIILKLDKLRHFSLFEDNQKFEDKLNMAVFRGACHQPTRQYFIENYY
CCCCCCCCCCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
NLPNTNFGDTRKESIGQPYNKGFLSIQDQLKYKYIVSIEGYDVATNLKWIMNSNSLCFMN
CCCCCCCCCCHHHHCCCCCCCCCEEECCCCCEEEEEEECCCEEECCEEEEECCCCEEEEC
KPKYETWFMEGTLIPNHHYVLLKDDYSDLQEKIDYYNNHPEKALKIIKNANEYVNQFKNK
CCCCEEEEEECEECCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
QREELISLLVMKKYFGLNKTSH
HHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKLKYYIKNISRTIIPKKFFELSLEHKLKSIAKFDKEYIEYRVNYYNRLSKPFMLQNSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
NWKNFKRNTPVFDIIDHSLVRKSINSSYFYDFKEFLVYFNKTDSFATAFYDLTKIPQQPT
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
FVKSRPIADDNQNSIILKLDKLRHFSLFEDNQKFEDKLNMAVFRGACHQPTRQYFIENYY
CCCCCCCCCCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
NLPNTNFGDTRKESIGQPYNKGFLSIQDQLKYKYIVSIEGYDVATNLKWIMNSNSLCFMN
CCCCCCCCCCHHHHCCCCCCCCCEEECCCCCEEEEEEECCCEEECCEEEEECCCCEEEEC
KPKYETWFMEGTLIPNHHYVLLKDDYSDLQEKIDYYNNHPEKALKIIKNANEYVNQFKNK
CCCCEEEEEECEECCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
QREELISLLVMKKYFGLNKTSH
HHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7539688 [H]