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The map label for this gene is ybhR [H]

Identifier: 134302382

GI number: 134302382

Start: 1414459

End: 1415577

Strand: Reverse

Name: ybhR [H]

Synonym: FTW_1508

Alternate gene names: 134302382

Gene position: 1415577-1414459 (Counterclockwise)

Preceding gene: 134302383

Following gene: 134302381

Centisome position: 74.56

GC content: 30.47

Gene sequence:

>1119_bases
ATGAAGTATTTTGATATTAATAGATATTATGCGATTTTTCTCAAAGAGGTTATTCATATGCTTAGAGATAAAGTCACAAT
TGGGTTAGTGATTGGTATACCACTTATTCAGCTAATACTATTTGGCTTTGCTATAAATATGAATCCAAAGCATCTAAGTA
CAGCAATAGTTAATGCTGATAAGACATTACAAACAAACTATTTGATTGAGAAGATAAATAATACTGGATATTTTGACATT
AAATATGAAAATATCTCAAGAGATGATGCGACAACACTAATGCGTAAAGGTAAGGTGCAGTTTATTATAGATATACTGCC
TAATTTTACTAAACAAGTTTATCGTGGTGAATCTCCGAATATTCTAATAATAGTAGATGGAGCAAACGCAACTTCGAATT
CAGGTGCTTTACAAGCTGTTGATAAGGTCAAAGAGATATACAGTCAATACTTTTCTAATAAACAAATACCTCAGCCACAG
TCTTTCAATTTTGTAATCCATAATAAATATAATCCAGAGAATAAAACACAAAATAATATCGTACCAGCATTAGCAGGAGT
GATTTTGACTATGACTATGGTTATGGTTACATCTTTGACAATCACGCGCGAGAAAGAGTATGGAACTATGGAGTCTCTTC
TTGCAACACCTGTAACATCTCTTGAGATTATTTTCGGTAAGATTACTCCATATATTGTTGTTGGCTATATTCAGTTATTA
TTGATTATTATATTTGCTAAGGTGATATTTGGAATAACCATAGTTGGTAGTATTTTATTATTACTTATTGCAACTTTTCC
TTTTATTATTGCAAATCTCTTGGTAGGTATTACATTCTCAACTATTGCTGATACACAATTACAGGCAATGCAAATGACAT
TTTTCTTTTTCTTGCCATCGATATTACTGTCAGGTTTTATGTTTCCATTTGATGGTATGCCAGAGTGGGCACAAGTCATA
GGTAATATTTTACCATTAACTCATTATCTAAATATTGTCCGAGAAATTCTTCTTAAAGGAGGAGGGTTTTTTGATATTCT
AAACAGCATTTATCCACTTTTAATTTTTATGATAGTAGTTTCTTTCATATGTATAAAAAAATACAAGAATACTATTTAG

Upstream 100 bases:

>100_bases
ACATTCAAACAAAGTATGAACAATTTGAATGGCAATCAATAGAAACATCACTTGAAGATGCTTTTATATATTTGATGAGT
AGCCAAAAGGATAACTTTGC

Downstream 100 bases:

>100_bases
ATTAGGTTCTGTGCACAAAAAACTTAAATTATATTGAAAATAGCTAAACCGCTGTTATTTAAGATTTGAAAAGCAATAAA
TATCAATGGTTTAGCAAATG

Product: ABC -2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MKYFDINRYYAIFLKEVIHMLRDKVTIGLVIGIPLIQLILFGFAINMNPKHLSTAIVNADKTLQTNYLIEKINNTGYFDI
KYENISRDDATTLMRKGKVQFIIDILPNFTKQVYRGESPNILIIVDGANATSNSGALQAVDKVKEIYSQYFSNKQIPQPQ
SFNFVIHNKYNPENKTQNNIVPALAGVILTMTMVMVTSLTITREKEYGTMESLLATPVTSLEIIFGKITPYIVVGYIQLL
LIIIFAKVIFGITIVGSILLLLIATFPFIIANLLVGITFSTIADTQLQAMQMTFFFFLPSILLSGFMFPFDGMPEWAQVI
GNILPLTHYLNIVREILLKGGGFFDILNSIYPLLIFMIVVSFICIKKYKNTI

Sequences:

>Translated_372_residues
MKYFDINRYYAIFLKEVIHMLRDKVTIGLVIGIPLIQLILFGFAINMNPKHLSTAIVNADKTLQTNYLIEKINNTGYFDI
KYENISRDDATTLMRKGKVQFIIDILPNFTKQVYRGESPNILIIVDGANATSNSGALQAVDKVKEIYSQYFSNKQIPQPQ
SFNFVIHNKYNPENKTQNNIVPALAGVILTMTMVMVTSLTITREKEYGTMESLLATPVTSLEIIFGKITPYIVVGYIQLL
LIIIFAKVIFGITIVGSILLLLIATFPFIIANLLVGITFSTIADTQLQAMQMTFFFFLPSILLSGFMFPFDGMPEWAQVI
GNILPLTHYLNIVREILLKGGGFFDILNSIYPLLIFMIVVSFICIKKYKNTI
>Mature_372_residues
MKYFDINRYYAIFLKEVIHMLRDKVTIGLVIGIPLIQLILFGFAINMNPKHLSTAIVNADKTLQTNYLIEKINNTGYFDI
KYENISRDDATTLMRKGKVQFIIDILPNFTKQVYRGESPNILIIVDGANATSNSGALQAVDKVKEIYSQYFSNKQIPQPQ
SFNFVIHNKYNPENKTQNNIVPALAGVILTMTMVMVTSLTITREKEYGTMESLLATPVTSLEIIFGKITPYIVVGYIQLL
LIIIFAKVIFGITIVGSILLLLIATFPFIIANLLVGITFSTIADTQLQAMQMTFFFFLPSILLSGFMFPFDGMPEWAQVI
GNILPLTHYLNIVREILLKGGGFFDILNSIYPLLIFMIVVSFICIKKYKNTI

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=349, Percent_Identity=27.7936962750716, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1787011, Length=338, Percent_Identity=28.1065088757396, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI48994943, Length=374, Percent_Identity=28.0748663101604, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI226510979, Length=384, Percent_Identity=25.78125, Blast_Score=111, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24650855, Length=368, Percent_Identity=26.6304347826087, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24650853, Length=368, Percent_Identity=26.6304347826087, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI85725260, Length=380, Percent_Identity=25.7894736842105, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI85725262, Length=380, Percent_Identity=25.7894736842105, Blast_Score=92, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 42022; Mature: 42022

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYFDINRYYAIFLKEVIHMLRDKVTIGLVIGIPLIQLILFGFAINMNPKHLSTAIVNAD
CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
KTLQTNYLIEKINNTGYFDIKYENISRDDATTLMRKGKVQFIIDILPNFTKQVYRGESPN
CHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
ILIIVDGANATSNSGALQAVDKVKEIYSQYFSNKQIPQPQSFNFVIHNKYNPENKTQNNI
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCHH
VPALAGVILTMTMVMVTSLTITREKEYGTMESLLATPVTSLEIIFGKITPYIVVGYIQLL
HHHHHHHHHHHHHHHHHHHHHEECHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LIIIFAKVIFGITIVGSILLLLIATFPFIIANLLVGITFSTIADTQLQAMQMTFFFFLPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLSGFMFPFDGMPEWAQVIGNILPLTHYLNIVREILLKGGGFFDILNSIYPLLIFMIVV
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SFICIKKYKNTI
HHHHHHHHHCCC
>Mature Secondary Structure
MKYFDINRYYAIFLKEVIHMLRDKVTIGLVIGIPLIQLILFGFAINMNPKHLSTAIVNAD
CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
KTLQTNYLIEKINNTGYFDIKYENISRDDATTLMRKGKVQFIIDILPNFTKQVYRGESPN
CHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
ILIIVDGANATSNSGALQAVDKVKEIYSQYFSNKQIPQPQSFNFVIHNKYNPENKTQNNI
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCHH
VPALAGVILTMTMVMVTSLTITREKEYGTMESLLATPVTSLEIIFGKITPYIVVGYIQLL
HHHHHHHHHHHHHHHHHHHHHEECHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LIIIFAKVIFGITIVGSILLLLIATFPFIIANLLVGITFSTIADTQLQAMQMTFFFFLPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLSGFMFPFDGMPEWAQVIGNILPLTHYLNIVREILLKGGGFFDILNSIYPLLIFMIVV
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SFICIKKYKNTI
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]