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The map label for this gene is ybiR [C]

Identifier: 134302249

GI number: 134302249

Start: 1253667

End: 1254905

Strand: Reverse

Name: ybiR [C]

Synonym: FTW_1331

Alternate gene names: 134302249

Gene position: 1254905-1253667 (Counterclockwise)

Preceding gene: 134302250

Following gene: 134302244

Centisome position: 66.1

GC content: 29.62

Gene sequence:

>1239_bases
ATGATAATTCCTATAATAGTTTTAATAGGTGTTTTTATACTTATTGCAATTAGACAAATTGGTAATATAAAACTTCAAAT
CTGGCAAATAATGCTTTTAGGCGCAATTATCGTTTTAATCACACGACAAATTTCTGTTGCCAATGCTTTAAAGTCGATAA
ATTTAGATGTGATGATGTTTTTATTTAGTATGTTTGTTATTGGTGTGGCGCTTGAAGAGAGTGGCTATCTTAGCTTTTTA
TCTTACAGAATATTTAAAAGAGCAAAAAATATAAATCAATTATTATTGTATATTTTGTTTGGAGCGGGATTAGCTTCTGC
AGTTGTCATGAATGATACTTTGGCTATTATTGGTACGCCTATGCTTTTATTAGTTGCGAGGAAATATGCTATTAATCCTA
AAGTACTTCTATTGACATTAGCATTTGCTGTGACAATAGGCAGTGTGATGAGTCCTCTTGGTAATCCACAAAATTTCCTT
ATTGCGACACAAGCTAATTTAGGTAACTCATTTATAACCTTTTTTCGTTATTTGTGTATTCCAACACTGATAAATTTGTT
TGCCGCATTCCTACTGATAAAAATTTTCTACAAAAAGCAACTTAATAATGATTATCAGCTCAATCATTCGTACGAATCTA
TAAAAGATCCATACTTAGCATTATTAGTTAAAATATCCTTAACTATATTACTAAGTTTAATATTTATTAAAATTATTCTG
ACATTTTTACATTTTCAAATACAGATTAAACTAGTTTATATAACTATTATTGCAGCTTTACCGATTTTGCTTTTTAGTAA
AAGTAGGCTTAGGATAATAACTAAAGTAGATTGGCATAGTTTAATTTTCTTTGCGGCAATGTTTATATTAATGGCAAGTG
TATGGCAAAGTGGATTTTTCCAATTAGTTATAAATAACCTTGATATAACCCTTATCTCTATCCCCGTTATATTAGTAGTA
AGTGTTGTGCTTAGTCAGTTAATTTCAAATGTGCCATTAGTGGCTATTTATTTACCACTACTTAGTCATTTAGGCGCAAC
TGACAAAGAGATTATGGTGTTAGCAGCTGCTAGTACTATAGCTGGTAACTTACTGATACTTGGAGCTGCAAGTAATATCA
TCATAATCCATAATGCAGAAAAAAAAGCAGCTATAACAATAACTTTCTTAGAATTTGCTAAAATTGGTATTCCAATGACA
ATAATCAATATTTTTATCTATTGGATATTTTTAGCGTGA

Upstream 100 bases:

>100_bases
CAAATCTGGAGATAGAAACCAATAGCGCACAATCATTTGCCATTTTTATTATACTTTGTTTATTGTATTCTACTAATAAA
TTTAAAGTGCCATAAACAAT

Downstream 100 bases:

>100_bases
TTATCTATAAAATTATTTGATAGACGCTTTTTCAGAGAGATAGCAGCTATTGCTAAGCTAATCCAAGCTAACATTAAAAT
GGTTCCACCTATAGGAGCAA

Product: arsenical pump membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MIIPIIVLIGVFILIAIRQIGNIKLQIWQIMLLGAIIVLITRQISVANALKSINLDVMMFLFSMFVIGVALEESGYLSFL
SYRIFKRAKNINQLLLYILFGAGLASAVVMNDTLAIIGTPMLLLVARKYAINPKVLLLTLAFAVTIGSVMSPLGNPQNFL
IATQANLGNSFITFFRYLCIPTLINLFAAFLLIKIFYKKQLNNDYQLNHSYESIKDPYLALLVKISLTILLSLIFIKIIL
TFLHFQIQIKLVYITIIAALPILLFSKSRLRIITKVDWHSLIFFAAMFILMASVWQSGFFQLVINNLDITLISIPVILVV
SVVLSQLISNVPLVAIYLPLLSHLGATDKEIMVLAAASTIAGNLLILGAASNIIIIHNAEKKAAITITFLEFAKIGIPMT
IINIFIYWIFLA

Sequences:

>Translated_412_residues
MIIPIIVLIGVFILIAIRQIGNIKLQIWQIMLLGAIIVLITRQISVANALKSINLDVMMFLFSMFVIGVALEESGYLSFL
SYRIFKRAKNINQLLLYILFGAGLASAVVMNDTLAIIGTPMLLLVARKYAINPKVLLLTLAFAVTIGSVMSPLGNPQNFL
IATQANLGNSFITFFRYLCIPTLINLFAAFLLIKIFYKKQLNNDYQLNHSYESIKDPYLALLVKISLTILLSLIFIKIIL
TFLHFQIQIKLVYITIIAALPILLFSKSRLRIITKVDWHSLIFFAAMFILMASVWQSGFFQLVINNLDITLISIPVILVV
SVVLSQLISNVPLVAIYLPLLSHLGATDKEIMVLAAASTIAGNLLILGAASNIIIIHNAEKKAAITITFLEFAKIGIPMT
IINIFIYWIFLA
>Mature_412_residues
MIIPIIVLIGVFILIAIRQIGNIKLQIWQIMLLGAIIVLITRQISVANALKSINLDVMMFLFSMFVIGVALEESGYLSFL
SYRIFKRAKNINQLLLYILFGAGLASAVVMNDTLAIIGTPMLLLVARKYAINPKVLLLTLAFAVTIGSVMSPLGNPQNFL
IATQANLGNSFITFFRYLCIPTLINLFAAFLLIKIFYKKQLNNDYQLNHSYESIKDPYLALLVKISLTILLSLIFIKIIL
TFLHFQIQIKLVYITIIAALPILLFSKSRLRIITKVDWHSLIFFAAMFILMASVWQSGFFQLVINNLDITLISIPVILVV
SVVLSQLISNVPLVAIYLPLLSHLGATDKEIMVLAAASTIAGNLLILGAASNIIIIHNAEKKAAITITFLEFAKIGIPMT
IINIFIYWIFLA

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=245, Percent_Identity=24.8979591836735, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 45874; Mature: 45874

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIPIIVLIGVFILIAIRQIGNIKLQIWQIMLLGAIIVLITRQISVANALKSINLDVMMF
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LFSMFVIGVALEESGYLSFLSYRIFKRAKNINQLLLYILFGAGLASAVVMNDTLAIIGTP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
MLLLVARKYAINPKVLLLTLAFAVTIGSVMSPLGNPQNFLIATQANLGNSFITFFRYLCI
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH
PTLINLFAAFLLIKIFYKKQLNNDYQLNHSYESIKDPYLALLVKISLTILLSLIFIKIIL
HHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
TFLHFQIQIKLVYITIIAALPILLFSKSRLRIITKVDWHSLIFFAAMFILMASVWQSGFF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCHH
QLVINNLDITLISIPVILVVSVVLSQLISNVPLVAIYLPLLSHLGATDKEIMVLAAASTI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHH
AGNLLILGAASNIIIIHNAEKKAAITITFLEFAKIGIPMTIINIFIYWIFLA
CCCEEEEECCCCEEEEECCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIIPIIVLIGVFILIAIRQIGNIKLQIWQIMLLGAIIVLITRQISVANALKSINLDVMMF
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LFSMFVIGVALEESGYLSFLSYRIFKRAKNINQLLLYILFGAGLASAVVMNDTLAIIGTP
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
MLLLVARKYAINPKVLLLTLAFAVTIGSVMSPLGNPQNFLIATQANLGNSFITFFRYLCI
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH
PTLINLFAAFLLIKIFYKKQLNNDYQLNHSYESIKDPYLALLVKISLTILLSLIFIKIIL
HHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
TFLHFQIQIKLVYITIIAALPILLFSKSRLRIITKVDWHSLIFFAAMFILMASVWQSGFF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCHH
QLVINNLDITLISIPVILVVSVVLSQLISNVPLVAIYLPLLSHLGATDKEIMVLAAASTI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHH
AGNLLILGAASNIIIIHNAEKKAAITITFLEFAKIGIPMTIINIFIYWIFLA
CCCEEEEECCCCEEEEECCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]