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The map label for this gene is ygdD [C]

Identifier: 134302248

GI number: 134302248

Start: 1253266

End: 1253688

Strand: Direct

Name: ygdD [C]

Synonym: FTW_1330

Alternate gene names: 134302248

Gene position: 1253266-1253688 (Clockwise)

Preceding gene: 134302247

Following gene: 134302262

Centisome position: 66.01

GC content: 31.21

Gene sequence:

>423_bases
ATGAACTTAATAATTGGTGCAATCTTAGGTTTTATATCAGTAGCTTTTGGAGCTTATGCTGAGCATGGTCTGAAATCACA
AATCTCAGCCGAGCATTTTAATTTTATCATGACTGCTCTACGCTATAATCAAATCTATGCAATTATAATTAGTGGCATAG
GACTAGCTCTAATAAGTAGTAAACATGTGGCTCAAAGCTTAATGCTTAAATTAAGTAGTTCGCTTTTTATCATTGGTACA
GTACTTTTTAGTTTTAGTATTTATATCTCTATAATTTGCAATATACAAAGTCTTATGAAAATTGCTCCTATAGGTGGAAC
CATTTTAATGTTAGCTTGGATTAGCTTAGCAATAGCTGCTATCTCTCTGAAAAAGCGTCTATCAAATAATTTTATAGATA
ATCACGCTAAAAATATCCAATAG

Upstream 100 bases:

>100_bases
ATATACAATTTTGCCAAAATCATATATAGTCTATTTGCAAAATGGCGTTTTAATCGTTTAGATCACTGTAAGATAAAATA
GTTTAAATAGGAAAAAACAA

Downstream 100 bases:

>100_bases
ATAAAAATATTGATTATTGTCATTGGAATACCAATTTTAGCAAATTCTAAGAAAGTTATTGTTATAGCTGCTTTTTTTTC
TGCATTATGGATTATGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNLIIGAILGFISVAFGAYAEHGLKSQISAEHFNFIMTALRYNQIYAIIISGIGLALISSKHVAQSLMLKLSSSLFIIGT
VLFSFSIYISIICNIQSLMKIAPIGGTILMLAWISLAIAAISLKKRLSNNFIDNHAKNIQ

Sequences:

>Translated_140_residues
MNLIIGAILGFISVAFGAYAEHGLKSQISAEHFNFIMTALRYNQIYAIIISGIGLALISSKHVAQSLMLKLSSSLFIIGT
VLFSFSIYISIICNIQSLMKIAPIGGTILMLAWISLAIAAISLKKRLSNNFIDNHAKNIQ
>Mature_140_residues
MNLIIGAILGFISVAFGAYAEHGLKSQISAEHFNFIMTALRYNQIYAIIISGIGLALISSKHVAQSLMLKLSSSLFIIGT
VLFSFSIYISIICNIQSLMKIAPIGGTILMLAWISLAIAAISLKKRLSNNFIDNHAKNIQ

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=124, Percent_Identity=33.0645161290323, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 15215; Mature: 15215

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLIIGAILGFISVAFGAYAEHGLKSQISAEHFNFIMTALRYNQIYAIIISGIGLALISS
CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KHVAQSLMLKLSSSLFIIGTVLFSFSIYISIICNIQSLMKIAPIGGTILMLAWISLAIAA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ISLKKRLSNNFIDNHAKNIQ
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNLIIGAILGFISVAFGAYAEHGLKSQISAEHFNFIMTALRYNQIYAIIISGIGLALISS
CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KHVAQSLMLKLSSSLFIIGTVLFSFSIYISIICNIQSLMKIAPIGGTILMLAWISLAIAA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ISLKKRLSNNFIDNHAKNIQ
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]