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The map label for this gene is yafD [C]

Identifier: 134301188

GI number: 134301188

Start: 22299

End: 23018

Strand: Reverse

Name: yafD [C]

Synonym: FTW_0026

Alternate gene names: 134301188

Gene position: 23018-22299 (Counterclockwise)

Preceding gene: 134301189

Following gene: 134301184

Centisome position: 1.21

GC content: 29.86

Gene sequence:

>720_bases
ATGTTTGAATTAAACTCAAAAGATAATGACTCTAAAAAATTCTGCTTAATGAGTTGGAACTCATATAAGATAGACCATAA
GGATTCAGAGACTTTTAGCGCCTATATCAGGCATGTATATTTTAACTATAATATTGATATTTTTTGTTTACAAGAAGCTG
TTCATCATCATGGTAGCAAGTTTCCTATAGACAAATTTGATATAAATTTTGCTTCGAATATTGTATTACGTTCACATAAC
TATGGTGTCGCGACTGTTAGTCATTATCCAGTTATAAAAAATGTCAAAATACTTACAACGCATCGAGAATCTGTTATAAA
TACCCACAAAGCTTCTTTGATAACGCATCTAAATATCAATAATACTAAAGTAATAGTTGTAAATATTCATGCGATAAACT
TTAAAAGCAATAAAGTTTATGAATATGAATTCGAAAAAATAAAAGAATTTATCGCGCCTGAGAAATACAAGCATCCAATT
ATAATTGCTGGCGATTTTAACACTTGGAATAGAAAAAGAGTTAAGCTAATAAAAGACTTCTGTCGAGAGTTTTGCTTTAA
AGTGGCATTTATAGATGAGCCGCAACTAGTTAAATCGTTCCAAAATAACCATCTAGACTTTGTTTTGTATCGAGGTTTAA
GCCTTGAAAAAGCTGCAGTGCTAGATTGTAAAAAAATATCTGATCATAATCCCATTATCGCTGAATTTTGTATCAAATAA

Upstream 100 bases:

>100_bases
ATTGTTTTGAGATTTATTGTTACAAATCCTAGCTAAAATGATTTTATCTAATAATTTTAATATATAATAAAGCTATACTA
TGCCAGCCTTAAGTGGTTAG

Downstream 100 bases:

>100_bases
GAAATTTAGCCACCGAAAGATTTGGTTTTATCATTAATGATGTCATAACACATATCTGTTAATTCAGCGACAGAATAGTT
TTTAGGGTCTATAGCTTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MFELNSKDNDSKKFCLMSWNSYKIDHKDSETFSAYIRHVYFNYNIDIFCLQEAVHHHGSKFPIDKFDINFASNIVLRSHN
YGVATVSHYPVIKNVKILTTHRESVINTHKASLITHLNINNTKVIVVNIHAINFKSNKVYEYEFEKIKEFIAPEKYKHPI
IIAGDFNTWNRKRVKLIKDFCREFCFKVAFIDEPQLVKSFQNNHLDFVLYRGLSLEKAAVLDCKKISDHNPIIAEFCIK

Sequences:

>Translated_239_residues
MFELNSKDNDSKKFCLMSWNSYKIDHKDSETFSAYIRHVYFNYNIDIFCLQEAVHHHGSKFPIDKFDINFASNIVLRSHN
YGVATVSHYPVIKNVKILTTHRESVINTHKASLITHLNINNTKVIVVNIHAINFKSNKVYEYEFEKIKEFIAPEKYKHPI
IIAGDFNTWNRKRVKLIKDFCREFCFKVAFIDEPQLVKSFQNNHLDFVLYRGLSLEKAAVLDCKKISDHNPIIAEFCIK
>Mature_239_residues
MFELNSKDNDSKKFCLMSWNSYKIDHKDSETFSAYIRHVYFNYNIDIFCLQEAVHHHGSKFPIDKFDINFASNIVLRSHN
YGVATVSHYPVIKNVKILTTHRESVINTHKASLITHLNINNTKVIVVNIHAINFKSNKVYEYEFEKIKEFIAPEKYKHPI
IIAGDFNTWNRKRVKLIKDFCREFCFKVAFIDEPQLVKSFQNNHLDFVLYRGLSLEKAAVLDCKKISDHNPIIAEFCIK

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=233, Percent_Identity=33.0472103004292, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 28079; Mature: 28079

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELNSKDNDSKKFCLMSWNSYKIDHKDSETFSAYIRHVYFNYNIDIFCLQEAVHHHGSK
CCCCCCCCCCCCEEEEEECCCEEECCCCCHHHHHEEEEEEEECCEEEEEEHHHHHHCCCC
FPIDKFDINFASNIVLRSHNYGVATVSHYPVIKNVKILTTHRESVINTHKASLITHLNIN
CCCCEEECCEECEEEEEECCCCEEEEECCCEECCEEEEEECHHHHHHHCCCEEEEEEECC
NTKVIVVNIHAINFKSNKVYEYEFEKIKEFIAPEKYKHPIIIAGDFNTWNRKRVKLIKDF
CEEEEEEEEEEEEECCCEEEEEHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
CREFCFKVAFIDEPQLVKSFQNNHLDFVLYRGLSLEKAAVLDCKKISDHNPIIAEFCIK
HHHHHHEEEECCCHHHHHHHHCCCEEEEEECCCCCCHHHHEEHHHCCCCCCCHHHEECC
>Mature Secondary Structure
MFELNSKDNDSKKFCLMSWNSYKIDHKDSETFSAYIRHVYFNYNIDIFCLQEAVHHHGSK
CCCCCCCCCCCCEEEEEECCCEEECCCCCHHHHHEEEEEEEECCEEEEEEHHHHHHCCCC
FPIDKFDINFASNIVLRSHNYGVATVSHYPVIKNVKILTTHRESVINTHKASLITHLNIN
CCCCEEECCEECEEEEEECCCCEEEEECCCEECCEEEEEECHHHHHHHCCCEEEEEEECC
NTKVIVVNIHAINFKSNKVYEYEFEKIKEFIAPEKYKHPIIIAGDFNTWNRKRVKLIKDF
CEEEEEEEEEEEEECCCEEEEEHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH
CREFCFKVAFIDEPQLVKSFQNNHLDFVLYRGLSLEKAAVLDCKKISDHNPIIAEFCIK
HHHHHHEEEECCCHHHHHHHHCCCEEEEEECCCCCCHHHHEEHHHCCCCCCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA