| Definition | Borrelia afzelii PKo plasmid lp60, complete sequence. |
|---|---|
| Accession | NC_008564 |
| Length | 59,958 |
Click here to switch to the map view.
The map label for this gene is 117621589
Identifier: 117621589
GI number: 117621589
Start: 14200
End: 15399
Strand: Direct
Name: 117621589
Synonym: BAPKO_2018
Alternate gene names: NA
Gene position: 14200-15399 (Clockwise)
Preceding gene: 117621588
Following gene: 117621590
Centisome position: 23.68
GC content: 21.67
Gene sequence:
>1200_bases TTGAAAACATCAAAACAAAAATCACCAAACACTACAAAAAGGGTAAAAAAAACTACAAAGAACTTCCAACACAACTTGAT TGTATTAATCTCTACTCTCAACTTTATAAACTTAAACTTAAAAAAATACACACAAAAAAACATCCTTTATTTTCTAAATA AAAACCTTGAAAGAAATAAACAAAACCCCATAAAACTAAAAACACTACAAAACTATTTATACACACTAGAGAAAAAATTT AAAATTACACTAAACTACTGTAAACATTTGGGAAAAAATTCTGGAAGTGAAACTTATTATAAACTTAAATATGAAAAAGA AAAATGCTATTCAATAATTAACACATACTTCAAGGAAAAAACAAATAATAAAATTAATGAATTTCTGCAAAGAATAAAAA AATTTAATCAAATAAATAGCAGTGTTAAATGGGAGTGTATTAATAATACTAATAATAATATATATAAATATAAAGAATAT AGAAATATATACAAAAATTCTAAAAAAACAACACCTGAGAAAATATTAAATAAATATTTAAGCAAATGCAATTTCAAAAC AGAAATTCCATCTCTGATAATGAATTTAGAAACGACACACAAGATTAAAATCTATCATTTAAGAAACTTAAAGCACATTG AAAATGATCTTAAAGAAATAGACCCTAAAAAAATCGAAAAATACCTATCAAACGCAATAAAAGAAAATATAAACAATCCT GGATACTTATGTAAATTTTTCAAAAACAATGGATACAAAAAGTTAATAAATAAAATAAAAGAAACAAATAAAAAATATAA AAACAAAACAGAAATTTTAAAAAAAATACTTAAAGAAAAAATAAAAGAATTAGAAAATGAGCAATATAAAAAAGAAGATC TTGAAAAGTTTTTTAACAAAACATATGAAATTTACAAAATAAAGCCACATTTCATAATAGAATACAAAAAATATCCAGAT TTAGATAAATTGGTTCAAAGGGCAAAAAAAGAAATTTGTAAAATTCAAGACAAAATGATACAGCTTAAAAGTATAAAAAA CAACATTTTTAGTATATTATTAGAACAGTTAAGGCATAAAGTAGACAATGATAAACTAATCCCTACTTTAAAAAAATTCA TTGAGAATGAGCCTGACCTTAAATATAGCAAGGTATTTGACAATTCTTACTATAATAATTTGATTAAAATAGTGAGCTGA
Upstream 100 bases:
>100_bases TTTTTTTATATTTTTTATATAAAAATACTTTACTTTTTTAAGAAACTGTACTATTAATTAATTTAGAATTAAAGAAATTA CTTATATTAGGAGTATAAAA
Downstream 100 bases:
>100_bases AAAGAAAATGCAAAGTTTAGCTCTGATATTAAGGAAAAAGGAAAAAAATGACGGCTTTACTTGAACGATTAAAGCAAAAG CAAAAAGAATTAAAATTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MKTSKQKSPNTTKRVKKTTKNFQHNLIVLISTLNFINLNLKKYTQKNILYFLNKNLERNKQNPIKLKTLQNYLYTLEKKF KITLNYCKHLGKNSGSETYYKLKYEKEKCYSIINTYFKEKTNNKINEFLQRIKKFNQINSSVKWECINNTNNNIYKYKEY RNIYKNSKKTTPEKILNKYLSKCNFKTEIPSLIMNLETTHKIKIYHLRNLKHIENDLKEIDPKKIEKYLSNAIKENINNP GYLCKFFKNNGYKKLINKIKETNKKYKNKTEILKKILKEKIKELENEQYKKEDLEKFFNKTYEIYKIKPHFIIEYKKYPD LDKLVQRAKKEICKIQDKMIQLKSIKNNIFSILLEQLRHKVDNDKLIPTLKKFIENEPDLKYSKVFDNSYYNNLIKIVS
Sequences:
>Translated_399_residues MKTSKQKSPNTTKRVKKTTKNFQHNLIVLISTLNFINLNLKKYTQKNILYFLNKNLERNKQNPIKLKTLQNYLYTLEKKF KITLNYCKHLGKNSGSETYYKLKYEKEKCYSIINTYFKEKTNNKINEFLQRIKKFNQINSSVKWECINNTNNNIYKYKEY RNIYKNSKKTTPEKILNKYLSKCNFKTEIPSLIMNLETTHKIKIYHLRNLKHIENDLKEIDPKKIEKYLSNAIKENINNP GYLCKFFKNNGYKKLINKIKETNKKYKNKTEILKKILKEKIKELENEQYKKEDLEKFFNKTYEIYKIKPHFIIEYKKYPD LDKLVQRAKKEICKIQDKMIQLKSIKNNIFSILLEQLRHKVDNDKLIPTLKKFIENEPDLKYSKVFDNSYYNNLIKIVS >Mature_399_residues MKTSKQKSPNTTKRVKKTTKNFQHNLIVLISTLNFINLNLKKYTQKNILYFLNKNLERNKQNPIKLKTLQNYLYTLEKKF KITLNYCKHLGKNSGSETYYKLKYEKEKCYSIINTYFKEKTNNKINEFLQRIKKFNQINSSVKWECINNTNNNIYKYKEY RNIYKNSKKTTPEKILNKYLSKCNFKTEIPSLIMNLETTHKIKIYHLRNLKHIENDLKEIDPKKIEKYLSNAIKENINNP GYLCKFFKNNGYKKLINKIKETNKKYKNKTEILKKILKEKIKELENEQYKKEDLEKFFNKTYEIYKIKPHFIIEYKKYPD LDKLVQRAKKEICKIQDKMIQLKSIKNNIFSILLEQLRHKVDNDKLIPTLKKFIENEPDLKYSKVFDNSYYNNLIKIVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48333; Mature: 48333
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSKQKSPNTTKRVKKTTKNFQHNLIVLISTLNFINLNLKKYTQKNILYFLNKNLERNK CCCCCCCCCCHHHHHHHHHHHHHCCHHHEEEHHHHHCCHHHHHHHHHHHHHHCCCHHCCC QNPIKLKTLQNYLYTLEKKFKITLNYCKHLGKNSGSETYYKLKYEKEKCYSIINTYFKEK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHH TNNKINEFLQRIKKFNQINSSVKWECINNTNNNIYKYKEYRNIYKNSKKTTPEKILNKYL CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHH SKCNFKTEIPSLIMNLETTHKIKIYHLRNLKHIENDLKEIDPKKIEKYLSNAIKENINNP HHCCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC GYLCKFFKNNGYKKLINKIKETNKKYKNKTEILKKILKEKIKELENEQYKKEDLEKFFNK CCEEEHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TYEIYKIKPHFIIEYKKYPDLDKLVQRAKKEICKIQDKMIQLKSIKNNIFSILLEQLRHK CEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDNDKLIPTLKKFIENEPDLKYSKVFDNSYYNNLIKIVS CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKTSKQKSPNTTKRVKKTTKNFQHNLIVLISTLNFINLNLKKYTQKNILYFLNKNLERNK CCCCCCCCCCHHHHHHHHHHHHHCCHHHEEEHHHHHCCHHHHHHHHHHHHHHCCCHHCCC QNPIKLKTLQNYLYTLEKKFKITLNYCKHLGKNSGSETYYKLKYEKEKCYSIINTYFKEK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHH TNNKINEFLQRIKKFNQINSSVKWECINNTNNNIYKYKEYRNIYKNSKKTTPEKILNKYL CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHH SKCNFKTEIPSLIMNLETTHKIKIYHLRNLKHIENDLKEIDPKKIEKYLSNAIKENINNP HHCCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC GYLCKFFKNNGYKKLINKIKETNKKYKNKTEILKKILKEKIKELENEQYKKEDLEKFFNK CCEEEHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TYEIYKIKPHFIIEYKKYPDLDKLVQRAKKEICKIQDKMIQLKSIKNNIFSILLEQLRHK CEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDNDKLIPTLKKFIENEPDLKYSKVFDNSYYNNLIKIVS CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA