gi|339327781|ref|NC_015727.1|  Cupriavidus necator N-1 plasmid BB1p, complete sequence. [asmbl_id: NC_015727].1499175, gc%: 61.39%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
638311..638841                     integrase family protein; CNE_BB1p06080                                              N/A                 MHLPRGFYERLYVYMHSDRARKRRQLAGGGDDRDQPLFLSHRGAPLYEDRASRGPVSTGPQVRRHVKTGQAVRQFIKDELLPMMRARLGNLRYEFSFHDLRSTCGLNMVDAMTANETRYTRALDQLRQLMWHTRLSTTEGYLSYRENRKLFDAVQDSWGTHLSTLVTRALDTAVAV
638838..639275                     hypothetical protein; CNE_BB1p06090                                                  N/A                 MSRLYEEVRMPLAVGTTLQHPERALLKWEGIRNRSDIGQICYLTRDTLNTRHTFDPRGFSSERTKVVRLLVTQPSERVTLGARRPETIYGALRGVLDFANRADRLGLHQVLCNEKATAELDSAHWERAVRESGYVAAQQTVQPEV
complement(639877..640101)         50S ribosomal protein L17; CNE_BB1p06100                                             N/A                 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTVPNAKELRKVVEPLITLAKKAPLPTAAWLSRACATAT
640170..640634                     hypothetical protein; CNE_BB1p06110                                                  N/A                 MDMTDTNATERERAIVRVLHPLGRGPLSRQQAKKAGELLGVHRSTIYRLRRLFLANPAASAWIPHNPGPKAGELRLPATVEKIVSEVLTDWLPRQRHLAHPLLELCVEIRKRCAGENVSPPSRPTISRRWAAQWQAEAQSSVRVRVRRRVRQEV
640929..641444                     carboxymethylenebutenolidase ClcD; CNE_BB1p06120                                     N/A                 MNSPQSRASSASETLTVRQQAIVPIAAFGAAGDIAKLNAALNRGLDSGLTVSEAKEILVQLYAYAGFPRSINALAELMKVLDARKQRGVHDVPGSDPSRAVPKGDALLTAGTANQTKLSGAPVRGALFEFAPAIDEYLKTHLFGDIFERDNCCRSLIPRSAPTHLRAITLG
641604..643235                     PHAGE_Rausch_virus: Pol; CNE_BB1p06130; phage(gi9629516)                             2e-06               MTQPTEREFAIARVLRPLGRGPLSRKQADYAGKLLRMHRSTVYRLRQRFLADPVASALSPYDRGPRSGKGRLPAQVENIVNDVLSTWLPQQRYLAHPLFELTIEIRKRCAAAGVTAPARSTVSRRWAAYRKEEALLQAALPAAAIPPGSLVARYPMDIVQVDHTLADVIVVDELYRRPIGRPWLSLAVDVATRCVVGVYVGMDRPNAATVALLLTRVVLPKLSWLASLEVSADWPMHGIPKVLHLDNAAEFKSRALRSGCSQYGVELMYRPAGRPYFGGHIERLNRTLMERVHSLPGSTGSSPKGRKARPPEREASLTIREFEKWLVLEIAQRYHHNAHRGLRGATPYSMWATLGGETPPKLLPDTASEALRFLIQFLPMTHRTVQADGLTLFYIRYWHPIFTAWRATKQKVITRFHPEDLSKIFVSVDGKRYLEATFADLRRDRVSLWEQRSALRHLRAQGQEYVSEAMLFMAIDEQRRIVARARTQSLGASRRRNALKDPVPRNARQENSQVRQGESASVRPTEASVDYSKPAIAYDVEQW
643242..644111                     TniB-like transposition protein; CNE_BB1p06140                                       N/A                 MGALLTHLLPTARPLAQCDDNVRIRGLARNRWIDYPRATQALEILERLIQTPERERMPCLLLHGDSNIGKTQIISKFQRHHPPEYDEQKGVEMCKIVAMQMPPTPDQQRFYASLLFELGAPFNATARLSALEKLTRELLRKVAPRMLIVDEVHHLLAGSYREQRASLNLLKFLANDLRISIVLVGTQDAVIALQTDPQMVSRFTRFEIPRWNESEAFRCLLAAFERILPLRRPSNLARQEMVRAILAASGGLTGEVSRVLNVATELAIRDGREVIEVGHIENAARGLLC
644741..645895                     transposase; CNE_BB1p06150                                                           N/A                 MNADHATELHAEDAILAVSLELSAAQWKVALHDGFREQPAVHSVGALQAASRLQAVLDLIEQQKRKWSLPSHVRVVVSYEAGQDGFWILRSLRSRGIDCYMVDAASIPVERHKRRAKTDRLDAIKLVTNLRAWLHGERDRMRVVRAPSLQDEASRHLIRDRGQLQKEVMQHRDRMRKLLVTVGCWDEVDHRAFAKRLARGELTCHDGSPLPDELRERLLRESHRLELAEQQLKDLQRTLHDRLPEPVRERITWLKRLRGVGDIGASRLMLELFWRQFRNRRQLGACVGLVPQPYDSGQSRVDQGISKQGNRRVRVQLIEMAWGWLRYQPGSALTRWFNERTQGTGPNRRARRIAIVALARRLVIALWRYLTEGIIPDGAQFKLA
complement(646304..646636)         hypothetical protein; CNE_BB1p06160                                                  N/A                 MSDQQVDLRHVRDNLGHASIATTSIYLHTEDDARHEATEDKHRIGWTHKGIGRPPATPPMTASSRKSYLYFHESEILPKCSCSPDRGETSPDAASSLTGHIACRFSSVGG
complement(646736..647293)         transcriptional regulator IclR family; CNE_BB1p06170                                 N/A                 MQDGTKYRLSYRLPGLIATPDDISALVDRIKPRLSRLAAETNETVHFAVAEGDQVVYLAKVDSSHPIRMFSYVGWQGPMHATAVGKALLAWPTLSPAVDRICDAGLHRYTARTIVDKNSLLAELERTRARGYAVDDEELIEGLVCIAAPVFEGDHVVGAISVAGPSSRMHDVEAYASLLLACAAE
647572..648552                     PHAGE_Parame_1: N-carbamoylputrescine amidohydrolase; CNE_BB1p06180; phage(gi9631647)     7e-08               MKSNSNFSPFTAAVVQGTPVPFDVSGTLARVDELVASSVTRGAQLVVFPEAFLGGYPKGHLFGSYVGGRTAEGRDAWRKYWEAAIDVPGPAVTVLSEIARKHSVYLVIGVIEREGGTLYCCVLFFDPFGKFMGKHRKLMPTGAERMIWGFGDGSTMPVFQTPIGNIGAVICWENYMPLMRAAMYAKGIQIYCAPTADPRPSWIASMQHIAVEGRCYVLACNQFLKRRHFADTYPCQLGDDPELILQAGGSCIINPFGEIIAGPIFDEEAILTAEVNLDDVLRGKFDLDVTGHYARPDIFQLSVDERARQSVTISATSAVPLAQENS
649630..649887                     hypothetical protein; CNE_BB1p06190                                                  N/A                 MRSERGVCRRPAPERLNVSDAHFAARPRGFATHESPPTLGASVDRAAFARVVEAGNFSVAARQLGRTPSTVSRQIKRLKKTLGVR
complement(649862..650131)         hypothetical protein; CNE_BB1p06200                                                  N/A                 MEAVARWIDFVVGEHELHVFFGELAQEARNYRMNHGRCVSRERSNTDAAPRLGVQLAGRNYSTHGRVHHVSSMLANFKGVPINARPVFS
complement(650247..651293)         PHAGE_Burkho_phi1026b: gp58; CNE_BB1p06210; phage(gi38707948)                        2e-07               MSPYVESLESWFAALLHCLVDANFYAAHMFCLCKQVEHRVLITCTPFGRHAMQIATYRYFLAVAETGSIRRGAEQAHISPSAISRQIQLLEHAFQAPLFERNQTGMVLTEEGRIVAEQMRSSLRDMELARARIDELHGLVRGCVSFASIEGVMAAWLLPAISQFRAEHPGITFQAQVTGSEHVLRLVQGGAVDFGVALAPDEHEPDLQIVRRFVTRYVVAVAPIHELAKHRSITLRTLLLLPLALLDSRFETRRWLNHVAMRQHLPLQAAIDLDHIESIKRAVRGGAVATVLPDYAVSADAASGDLVMIELEGASAARTATVLCTRKGRVQTRAAQAVIDLLARSAPA
651295..652911                     PHAGE_Burkho_phi1026b: gp59; CNE_BB1p06220; phage(gi38707949)                        2e-48               MKTSSHFVSASAAPQATHADRSKTRLVVIAAALGTVFEWFDFYLYGALAVFFSALFFPPGNETAAFLASLAAFGAGFAVRPLGALLFGSLGDRIGRKKSFLITMIIMGIATVVVGLLPTYAQVGIWAPILLVTMRLAQGLAVGGEYGGAATYVAEHAPHGQRGRATSWLQTTATFGFLLSLLVILGCRMAVGEEAFKQWGWRIPFLTSVVLLAVSVWIRMTLEESPVFEKMKSEGLVSKQPIREAFGNWANLKRVLITLFGITTGMTVVWYTAQFYALFFMQSALQVDYKTSYMIFAVGLVLGTPLIVLFGALSDKIGRKPIMIAGMVLGALTLMPSFHALAKFTNPALTQFSAATPITIRGGSDCTFSLFAKPATDCDKARNFFSRNGLSYAFEKTEVGTAVVTTIGQTMLKGFDEVQFKATLTNAGFDPKVNSESVNFAGAVAIVAWLLALVGMVYGPMAAFMVEMFPASIRSTSLSLPYHVGVGILGGFLPFAASALVIYTGNMFAGLWYPVAIAAATALIGIFIVPETKDYDVH
652944..653870                     PHAGE_Parame_1: N-carbamoylputrescine amidohydrolase; CNE_BB1p06230; phage(gi9631647)     2e-06               MKSKVKVAVVQDSSVPFDAAATAEKTCLLIGQAAARGAELVLFPEAFLGTYPKGLTFDAPIGRRLPAGRDAYLRYVDGAVELDGPELKTVQAAARENGIFVVLGIIERLGATLYCTVVFIDPQRGLIGKRRKLMPTGAERLVWGFGDGSTLDVMTTPLGRVGAVICWENYMPAMRMSQYAQGVEIYCAPTADDRATWLPTMQHIAMEGRCYVLSAGQVITRGAFGANWRGIIGDKPEDVVMRGASVIVGPLGEVLAGPVYDECAILVAELDRDMLTKSKLDFDPVGHYARPDVFSLQVDRQPKEAVVF
complement(654284..655114)         PHAGE_Entero_Sf6: putative transposase OrfB; CNE_BB1p06240; phage(gi41057343)        2e-26               MIDREHPLPVSRQVKLVGIARSSAYYQPRPVSDADLKLMRRIDELHLEHPFAGARMLARLLRREGIQVGRRHVGTLMKRMGIEALYRRPNTSRKHAAHKIWPYLLRERKIDRANQVWALDTTYIPMARGFVYLTAVVDWASRRVLAYRVAITLESCHAVEAIEEAFAKYGAPEIVNTDQGSQFTATEFTDAVLDRGIQLSMDGKGSWRDNVFVERLWRSVKYEEVYLKAYDSVSHARRSIANYLTWYNQGRPHSSLAHQTPDEAYFAALPAIKSAA
complement(655111..655419)         transposase IS3/IS911; CNE_BB1p06250                                                 N/A                 MTKRSRRTHSATFKAKVAMAALKGDKTLAELAQQYDVHPSQITEWKQQLAEHAVDVFGSKTKTAAEPPVDVKALHAKIGQLTLENDFLESALSKAGLLSGKR
655522..656085                     PROPHAGE_Shewan_MR-1: IS110 family transposase; CNE_BB1p06260; phage(gi24375433)     4e-12               MQQIVLHEYIDTIRACNQHVASLEQEIERAVQDSPVWPVMEALMALRGISLIAAVTVVAELGDLRRFDDAPQLMAYLGLVPSEHSSGKPERRGGITKTGNSHVRRVLIEAAWTYRHPARKSAILQRRAERTTAQIQEVAWSAQKRLCQRFRHLTARGKLPVQVCTAIARELTGFIWAIGQQARFSTT
complement(656475..657530)         PHAGE_Parame_FR483: hypothetical protein FR483_N095L; CNE_BB1p06270; phage(gi155370193)     1e-07               MTLPIVKVAAVHAAPVYMNATATVSKAISFIEEAARHGAELVVFPESFIPGFPVWAALWAPIYNHDWFRLMVSNSILIDGPEMAQIQATARRNGVFVSMGFSESTEASVGCIWNSNALIGDDGTILNHHRKLVPTFYEKMVWAPGDGHGLRVNNTRIGRIGALICGENTNPLARYALAAQGEQIHISAWPAIWPTRMPGSGQNFDNLAANRIRAGGHSFEAKAFGILNSGFIDKIMFETLAASGDHQAIEVLENTPRAATQFLDPTGAVIGDTLQTEEGIAYATFDINACVEPKQFHDIVGYYNRFDVFNVEIDRRRLTPARFTPETTVARQGQPSGERVNVAETPFADMV
complement(657551..659404)         PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; CNE_BB1p06280; phage(gi163932195)     3e-05               MRKRIFYAVPFAVASSAALADNPTLVSADNRGLTFGVFAVLFLLTLGITWFAARRNSTASDFYTAGGGIGPRMNGLAIAGDYLSAAAFLGVSGLIALYGLDGISYVVGFFVSFIPVLILIAEPCRNLGKFTLGDVLAFRNNFRATKLVVAVSSILVALFYMVPQIVGGAVIVRALIGIPYELSVIAVGTLMLTYVLFGGMRATTSVQVLKAVLLITFCLILVILSWMPYGFNIESFFNGVISNASIQQYVQGLHAGTSTLSVADAGQRLLAPGLYLKNPLEQVSLGMALVLGTAAMPHILMRFFTVPNAKAARKSALYAMFAIGLCHLLIVVIGFSAALNVGPKAILAMDKGGNLAAPMLAQFLGGGPDSLLGNFMLAIVAAVSFATIVAVVAGLTLAAASSLAHDVYVGAIKNGAATEREQVRAARIATLLMAVISVVAGIATKGQNVAQLVGLGYAVAASANLPALICTLYWRRCNTAGVVAGVLGGTILSIGLVLISPNMTYPLLQKEAALKTVATLSKQISDTQDSDVRQKLAAQRAVAQSAADGIPDGARSIVGLHKPLIELRNPGIISIPFGFLLVVLFSLLSRSHLSESRWAELSVRRETGIGAAEAVVH
complement(659414..659740)         hypothetical protein; CNE_BB1p06290                                                  N/A                 MLFNHPDFGALVRQRRSVVVRLFVISMAFFFSLPLVSTFAPQLLLIKVTPSTTLGLWYNVAQYFIGGAIAWRYAVQLRRLDAMAASLTRDAKQPRSTVGALVAQRAIA
660024..660947                     PHAGE_Burkho_phi1026b: gp58; CNE_BB1p06300; phage(gi38707948)                        3e-11               MSQINPNWNDLKIFLEVARSGTLGGAARRIKCDQSTISRHISRLEEAINAPVFERDNQGLHITARGQALLEYVEAMESNVVALGEFLGGSHKEPSGTVRVGTMEGIASLYLAGEFVKFSGRFQKIAVELVTTTQQMHVNQREADVFLSFFPPDGKSLDVIPIGAFPLHLYASPVYLSKHGTPESPADLPDHQFSTYVNDLIQLDTVRWLDEAITRPKVGFQSSSMIAQMFAAVAGAGIVMLPSFAKAERFGLVKILDGQVKVSRTIWMTVHRDLQYLPRIKAITRFLQETISRDYPLPRSAQIHTGG
complement(661098..662369)         PROPHAGE_Escher_CFT073: transposase; CNE_BB1p06310; phage(gi26246249)                1e-113              MTETTSMTKKSRKSSAPKLFPDELIDQLLAQVQNKDAESILGESGLAGLLKKQLAERMLAAELTHHLASEAKQGKSGNHRNGSSAKTVITPNGELELDIPRDRQATFEPQLVAKYQRRLSGFDDHVISMYARGMSVREIQGHLQELYGLQVSPDLISTITDEVLAEVEQWQQRPLEAMYPIVYFDALRLKIRDEGTVRNKAVYLALGIRADGRKEVLGLWIEQTEGAKFWLKVFNELKNRGLEDILVAVVDGLRGFPQAIEAVYPAAQIQTCIVHLIRNSLNLASWKDRKGLATALKPIYQAATADAAAGALQAFAASDWGRKFPTVADMWRRQWEQVIPFFVYPPEVRRIIYTTNAIESMHMQLRKIVKNRGHFPSDEAASKLLYLALRNIEKDWKMPPITWKQAANQFAILFGDRFSNALR