gi|319788691|ref|NC_014825.1|  Ruminococcus albus 7 plasmid pRUMAL02, complete sequence. [asmbl_id: NC_014825].352646, gc%: 44.37%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
113771..113782                     attL                                                                                 N/A                 AAAACGGGAGAA
115946..115958                     attL                                                                                 N/A                 CTTTACATTAACA
complement(115967..116971)         PHAGE_Achole_L2: integrase; Rumal_3792; phage(gi9626516)                             3e-10               MSDNLFFYIQRYFMSYLMKQHNYGPNTVSSYRDTFKLLLKFMSESGKSISKKTVDEIDCDVVLKFLSWLSNVRKNGVPTQNVRLAHIKSFFRYVMMISPEYSGQCSEILSIPFAKEDKRLPDCMSTDAIKQMLSSIDSSSNEGLRHLAILSLMYDSACRVQEIISLDVKDFQPGQCCRIYVHGKGNKYRTIPLLGKTEKIISKYIRQFGLMQESPMFCNRNGDRLTRQGIRYIIRKYSKLANDTVPGIITGSVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTNPEVIRKAIETVAEKTVSESLDFFSDKEKDDLISFLDSLG
complement(116964..117944)         PHAGE_Achole_L2: integrase; Rumal_3793; phage(gi9626516)                             2e-06               MINDKEFLKFEEGFFKPYFEKFIEFKRGKGEKVAHSTMVRLRKLNNSLNTYYEHHISDQMVEELLAPRDGLSELERQYLTANLRQFCSFLALLGIDAVIVPRKYMRTVKSEFRPYIFSDDELRRLTIAADTLPASRKSSSHQQIYPVLVRLLIGTGMRIGEVLALKRANVDTSNGVINVINGKNGVSRFIPVSDSLKEVLFDYAKTIDMSDENRPFFTSSYTGGHLTYDAMKYMFPKMFKTAGIHKSDGKTPNIHSIRHTFCTKSLEKMLENGMNVYTAIPILAAYVGHVNYIDTEKYIHFTEQGHTDFLQKESSLGSLFPEVDNE
complement(117941..119173)         PHAGE_Bacill_phIS3501: phage integrase; Rumal_3794; phage(gi422934298)               4e-08               MIDSSYSMTLYDAIQLFQRHIIQNCGSESKTAQAYIRISNDLQRYAKETDLEVSPEDVIQEYYRIIVGVPAFEAVPSKSKERRGRAVQMILDILNGKEPKRKYTTHKRDCPITYLNVIRKYETFMRNDQKSDGTVRTRSGRITVFFAFLEECKCTSLEGITPELFARFVSSLNDRYSSQGKASILYTLRNFFSYDEFSGALSFDPIPFLTGIHSGKHERLPSFYTAEEVRRILNAVDRNTPWGKTVYLMMLLASVYGFRSSDIKAMVLDNINWKNRTINITQYKTHKEISLPMTDEILFALLDYIKNVRPESDCSNVFIRLRKPYIAYSMNDHFGDKILPFFEIAGVDTKGKHHGLHSLRHSLATNLLVSGTPINEIAVILGHTSAASTKTYVWSDIEHLRAAALEVPKK
119272..119284                     attR                                                                                 N/A                 CTTTACATTAACA
complement(120191..121777)         PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; Rumal_3795; phage(gi26989833)     3e-79               MIEKGNMTDAEYIAMLENEIKKRDKKIDKLEVENECLRKDNHIYLEALILSKHRIFGKSSEHTVDEGQQSFFNEAEQEYAENPEEPVKKTVKGYVRKSSKTRRDEIIKNIDTEIITCTVPENEQICPRCGSQMKAIGKKYIREEVELIPAKLIVKKYYSNTYSCKKCEKKNMPVFLHGLVPAPVLPHSLASASTVSWVIYQKYVNAMPLYRQEKDWERLGYALSRTTMANWIIRCSEDYFSRFVARLKEEMLKEKVLHCDETYVKVLREKDVSDNSKQYMWGYRTGKLSARQIVIYDYNKSRSGDVPKAFLGDFSGYLHTDGYAGYNKLTKVTHCNCWAHVRRKFHEAIVVDNEDSIARTGRDFCDKLFAIEAELDRLTTEERFNKRLTQEKPVFEAFWSWAEKIAPTVLPKTQLGKAFEYAFKRREFLGNYFKDGDCAISNNAAENAIRPFTVGRKNWLFSDTPKGAKASADIYSIVETAKANGLDVFKYFELLLTVLPSMAFLTNPDILEELLPWNESVQKICKAI
complement(122254..122448)         ABC transporter family protein; Rumal_3796                                           N/A                 MEDYCAFSKDHKCLKWEDYELTRHELEEADRLCHGNWIEIQRLYAYIDELRSILDKNNIDYPEM
complement(122448..123071)         PROPHAGE_Escher_CFT073: transposase/IS protein; Rumal_3797; phage(gi26248359)        3e-12               MADKINVKLVLELRQANMSQRAIAASRHAALVNVYYEKRGLDRDMILTLGNCGFIEKNQPVVFNGFTGSGKSYLACAIGRQACMQGFRTRYIRVPDLMQLLSEASLDVHGRAKLLKKFSGYRLLILDEWLLNDMTESEQHFIFELIERRYDCTSTIFCTQYKREDWHSRLGGGIHADAIMDRIVHTAAWVYSGDINMRELQAKGAES
complement(123239..123541)         PROPHAGE_Pseudo_KT2440: ISPpu15, transposase Orf1; Rumal_3798; phage(gi26990788)     9e-16               MIGDISRAEHVYIVCGYTDMRKAIDGLAAIVQQNFQLDVFSGSLFLFCGKRCDRIKALLWEEDGFVLLYKRLENGKYKWPRDSNEAKQITRQEFRWLLEG
complement(123538..123864)         hypothetical protein; Rumal_3799                                                     N/A                 MNEIAKVKKEVKLSKWAEMVRQRNESGLTVTDWCRENGINLKTYYYRLKRVRLAVCNEIEQHDIVPVEPIAGTEITAEKIEISVGDVKIFLPDDFNESTLRRLLGVLR
124053..124820                     PROPHAGE_Escher_CFT073: transposase/IS protein; Rumal_3800; phage(gi26248359)        8e-14               MINSTIERLRAMKMNSMAAELERQLEDADSYKQLGFEDRLSLLVDAEWNRRQNNKLVRYIRNAHFSDANATIEGIEYIEDRHLDKGKMLRFATCNYVDEGRHIILMGASGNGKTYIACALGNAACRKFKSVRYIRLPELLDELSIARTNGEFAKVIKAYRKVDLLILDEWLIRKLAPNDAYNLLEIIEARIEKSMIFCTQYHAEGWYERINPDPENDSPISDAIIDRIINTAYPVMIDGEISMRKRHGLPEGAEP
124820..125014                     ABC transporter family protein; Rumal_3801                                           N/A                 MNDYCAFSKDHTCLKWEDYLLTRHELEEADDLCHGNWIEIQRLYEYIDRLKAILDENEIDYPKI
125111..125794                     transposase IS3/IS911 family protein; Rumal_3802                                     N/A                 MSRRKLTDEERIQAVQEYLSGKGSYASIAKKYGVTKETFRQMVVFAKTDGIESVRISHTKKRYSAKTKLKAVTEYLDCKGSQVEICRKYHISSTSVLRKWISCYNSGKDFKERTRSERGITMNKGRKTTQEERAEIVAFCIENGKDYGLAMEKYGVSYQQIYSWVRKYEAKGVEGLTDRRGKAKSEDALTEADRLRMENKILQAKLKDMEMENKLLKKLRELQGGGH
125836..126684                     PROPHAGE_Escher_MG1655: IS150 transposase B; Rumal_3803; phage(gi16131429)           9e-49               MNEAEHYPIQKLCAAVHVARSAYYKWLKRKQSLSQKVNEQLVEWIKQHYEERNGILGYRQMTVVINREHDVHYNKKRIYRLMQILHLKSVTRVKKNTYIPSTPQITAENILNRDFHADKPNEKWLTDVTEFKYYVGSVIKKLYLSAILDLYDRRIVAYKIGDSNNNHLVFSTFDEAIEHNPDAHPIFHSDRGFQYTNKTFHKKLVDAGMIQSMSRVGRCIDNGPMEGWWGVLKSEMYYLRKFTDKTSLIAAIEEYIRYYNTGRYQIKLNSMTPMEFHRAYAA
127637..128059                     hypothetical protein; Rumal_3805                                                     N/A                 MPRKKKTVTTSVAETVNETVKAPVKENVAEVAAPVDEKPAKKPAAKRTPAKKSSAGKAKTTTSSTEKTAKTATTAAAPKEIIKLQLGSDEYDISEIKKAVEADYKDKFNGKIKTVDIYVKPEDKAAYYVINSDFSDKIDL
complement(128132..129454)         hypothetical protein; Rumal_3806                                                     N/A                 MTVYTKEVVTTISYMIGVRKDILETHFAECSELLGKLYADRSATVIRYLCKLRTTLMQKFKKTDTAMHYDLKNLHTLEWYDHDNIKQLEKWGFTIIQANYRSEKYMTDLTKLINENIDKCSHLFYDWVNWDYIRDLFYIPKYQRPQVLRDEFAKYMANIEHYPFQMFIHWTPEDRGNIIYTDRKFLKLVYEQHGDIFSDYTKYRDADDETRNNIYEFIDDSAKTAIAVDCENSNPFKLYSVLKGLNQDELAKIEKITLYDDPNTTAGWDWLSKFTQIPTEHIEIERVSDRKSLVDVRMTASVVTDFYRDGITSFIIVSSDSDFWGLIESLPNAQFLVMYEYEKCGSAIKEALSQHGIYYCAIDDFCSAGTEEMKKAVLFAELEKHFPTLIGQNPMELTQQIYEATRVTATKKEMENFCNRYVRNLKLKVVQDKFVIEIQR
complement(129461..129715)         hypothetical protein; Rumal_3807                                                     N/A                 MENEKEQLIDRTLYKRIKAMNRTEMEQFVQNVYAQGYGAAESQSIDYDSLKADIATIKGIGESRLQQIIAVIDKHIANTDDERG
complement(129860..131251)         Relaxase/mobilization nuclease family protein; Rumal_3808                            N/A                 MNKSIAYILNPEKTEGMVLATSINCTTDAQDAYLQMKMIYEFYTRRSYDEPINREGKTPVKAIHYIMSFADSENVTPEYAQKVAMAFVRNTFGDDAQAVIATHTNTSHTHCHIILNSYSISGRKYNDNQATLRYVREHANGVCRALGITPALHFEDKGHSMQYNEWEHKKNGTSWKQQIREEIDKLIPTVNSLDELLQALEGLGYEIKRGKYISIKAPGQLRFVRTKTLGEEYTEESLVTRIQYREVGEGTAPSHDSDAELRAAYASVIGDVRVLADQHRKVPRKQNSELPYSAGNDLDVYKLSAQMSVMNKENIHSLSDLEYKAKEQKTLSEKYKAEINQQIMEYNKMMSLLEQSQTYYTLAHKTELSATEQSKLSVCRLAMQNNGLLTMSDVDTLRERAAISGRKIAALKEKLEGCKQKYAVYQDILDTYDRLSKRDYVAELIEEERQRREQEARKKRKKR
complement(131248..131577)         hypothetical protein; Rumal_3809                                                     N/A                 MARKYKQVHRKEIDFSLEEWAEVERRAAVCHTKTGTYIRHMAVHGEMNYYDMEKFIPLLNGMRIISNNINQIAKKANETNNIYAGDVEKLREEVSKLSHTLSQNPFTEQ
132121..132744                     PHAGE_Abalon_virus: primase; Rumal_3810; phage(gi216906077)                          4e-13               MSNIFQDIKDRIDLKDLVRYYGLNVDRGGFACCPFHNERNPSFKVYEDHYHCFGCGAHGDHTDFVEKLYGVSNIEAAKKISHDFGLGLCDGEIAIPAKRKKLRPPKDEGFELWVKESVPLLIEYKKLLQYWGKIYDPRSPIDKVDERYIESVHNRGYAEYFLDQLLYGTENEKRAMYETDRDYPLTVKIRLDSLDTVCRNACKSKAI
132761..132862                     hypothetical protein; Rumal_3811                                                     N/A                 MMKFLIGAVFCGSGAFFPFLLVDDDMEVVSDEV
132852..133244                     hypothetical protein; Rumal_3812                                                     N/A                 MKFENRDTEVFMYLVRIFVADKHNYLLPTTEHYKVNPNKTLLGYYDDEYIYLMPSVLLGMCDDYLTKIGRPKINIQKVLNTLFRANLIKVGWVMRKDLRYRPEKRIGNTRRRYITFIRRELRKEREDSND
133237..133422                     hypothetical protein; Rumal_3813                                                     N/A                 MTNEKLRYQMILAGVSLTELAEKMGITDEEMVAKMNTEMSVMEKFKVASAISDIIVERGDD
133422..133667                     hypothetical protein; Rumal_3814                                                     N/A                 MDTREFTKELASRKGISEQSAYRYINSVMDVLRQVLTEGEEVRVGSFGRFTVVTDLSGDKTVMFCSAKSLKQAVNAGEGMI
133698..133709                     attR                                                                                 N/A                 AAAACGGGAGAA
complement(133943..134131)         hypothetical protein; Rumal_3815                                                     N/A                 MEKITVGMTVKLIKDFDGSRPIGSTATIVYIDDFDQIFVDWSDGGQGRFSEEQLLKIFELAA
134460..134471                     attL                                                                                 N/A                 GCACTTTTGATT
134614..134718                     hypothetical protein; Rumal_3816                                                     N/A                 MHKKIVTAAISRVTENSGKFVETAPAYLIIKGAV
134718..134951                     hypothetical protein; Rumal_3817                                                     N/A                 MKTLLYGQAEYYYAISCQMTRRLEQQGIITADQRRRIDELDRKSIYEMYPSVDDLETETSGSENADDDNNADNDTAS
135099..136622                     PHAGE_Bacill_Gamma: site-specific recombinase; Rumal_3818; phage(gi77020163)         2e-30               MNNMIVVPAAAKVQRGLTRVAAYCRVSTSQENQEHSYEAQVRYFTNLYRSSSTETFVGIYADEGISGTSLDKRTEFQRMINDCRAGKIDRIVTKSVSRFARNTKDCLETLRELKALGVTVAFEKENIDTSRLSDEMMITVMGGLAQEESHSISRNVRWSIQRKMANGTFRHARVPYGYAKDDETGNLIVDPEQAEIIRRIFNMYVNGTGAHKIALTLNDEKIPSPTGIAWNKKTILKILDNEKYTGDTMWQKTYSEFMGEKFKPNHGQAAKYYIEGSHEAIISKELFEMAAKVKKKAAPKSFEKNNTPFRKKLICRKCGHTYTFISSKRRNYWQCNCRSAIDKPCDNRVLYNDELESAFTALCDKLHVHGTVILGKCAEQLAELQRLEQFGTAEGVKRMKELSDLKDQKQRFRGLYDKHFISEEKYQQQIGEIDLKIERLSREMSRLSGANDGISGEINTLLEMFEDYEGSDDDKKEIIESALEKITFVDETLTFRLQCGLEFTEVV
136625..137500                     Recombinase; Rumal_3819                                                              N/A                 MAVRKTPYGYIIANGRIAVDAEEAEVIKRIFSDRISGLSGVKIGAALFAEHIEPFTESEKKAADRIYSILNDERYCGADDYPTIISEETFAASRASMNKKTFGKEPDTYTILRKMSFCSECGKNLAHFSDQTRELRWRCTKKGCINSKPRITDVDFTASVLEVLNAVIETPEMLDTGEQLTEYVPDDKVAAIEAELKELFAAVPIDHERVKAKVYELATAKYNCCTYNRIPYITEELVHIIQGFTPSEEINKQMLTKTVEKITFDKNKVITVTFKNGRKIAAKEGEICQDR
137485..139122                     PHAGE_Bacill_phBC6A51: Site-specific recombinase; Rumal_3820; phage(gi31415812)      2e-37               MSRPIEAASNVKIIPAMSSEELKQAKYRQTRVAAYCRVSTDHEEQANSYKVQIDYYTNLINSNSEWTMAGIYADEGISGTQTKNRKEFNKMIRKCRQKKIDLVLCKSISRFARNTVDCLEYIRELRLLGIGVIFEKENINTLAMNSEFIISLYGSFAQAESESISKNVSWGIEKSFKEGKVKYVMDKTLGYRMGEDGKPYIVEEEAEIVRRIYRMFLDGLSMQRIADIMQAEGAARRSGCTTWNRSNVNYILKNEKYAGDAILQKSYTIDCITHKRVKNNGEKNKYILHDCHPAIIDRDTYNRTQQELTRRCTIKQRSDKAVTAQGRYASKYALTDIMICGECGTPYRRVVWNSHGKKLPVWRCINRLDHGNRYCKHSPSLNEEHLQQAIIDAINTAYTHNTAFLQSMENNISIVLNDEDKNNTERVRIESRLAEIDKARDDLIHLVTSGSVGEDSLDKEFEALNDEESYLKTQLEAMKSQTEKRDEVRYSIMSAVEGIGEMENTMVDYDEVAVRKMIECIKVLSKTEILIIFKGGYECNAVVEK
139193..139204                     attR                                                                                 N/A                 GCACTTTTGATT
complement(139352..140431)         PHAGE_Lactob_Lj928: putative integrase; Rumal_3821; phage(gi41179288)                4e-28               MNTLNIYARKDGRYEGRVYLGKDENGKRRYKSYYGATAEEVRRKHELTQFSAVPNIPASKMTIATLAAEWLLSVQNRVKESTLENYRLKLKKHIIPSFGAMNCCAVGSKEIYGFMNAKIGNGLSSRYVSDILVLMKSMFKYAAREYGFKNVFDGITMPKKQSKEVRLLTKDEENKLKSYITEKPTLAGMGIALTMYTGLRVGELCALTWADIDLDYRTLTVKKTMQRIQNHEGGGKTKLIISEPKSEKSRRIIPIPECMIEMLRSFKADDGCFLLTGKDKPMEPRAMQYRFSRLLKKLGLPHIHYHALRHGWASRAIELGFDVKTLSEILGHSSVELTMRLYVHSNFERKRACMDMFSW
140670..141587                     PHAGE_Staphy_phiETA: similar to phage phi 11 integrase; Rumal_3822; phage(gi17426229)     2e-06               MSIVKEQILVNDMTVSDLFEEWLASKTIRSDTANNYRIKYRRYLERILGGIKVNDITAEKWKELETEISNGTDSRGDSLTLTGIRSLFQMLRSIFTYGTKNYGLNYPMGETNLPEDRYTSETVFSPHEVEILRKSVKPYKPDHLGIMLCIYTGIQLGELCGAKWGDFDTDERVLRIRRSLAREHDKENDNKTVLRLTEYGNERTARNLHIPDWINDQLILLKRIHDDNEMFIPGKSGRCEPVIFVSYSYTGFLDKAGVKYRSFTATRNTYIKVSVENGMSSEELSLLLGDPSEEYTRKKYYDKVK
141591..142535                     PHAGE_Bacill_phIS3501: phage integrase; Rumal_3823; phage(gi422934298)               1e-09               MENKETTNMTFRELFDRWHKERSESVTETTSKVYRSYLNKYIPDDLKNRSVNSIDFDEWKSIKNEMLNGKAPNGSKVVSSTARMALGVYHAVFIYGKRNFGLKNPADGESINYRDIRSITVFTEKEVRKLRKAVKPYDVVHLGIMLCLYTGAEVNEICAVRWGDLDLKNNLLKIRGVVEKINKRSKKEKNNLIVVEITEKKNSRELPIPTWIAEQLKIMEPMHDDDENFLTGEEGCAYPMTFRGQYVAFVKAARVQKRSISALRHTFAMTCVKKNVEVGTLSEMLGHKKVSDTLRMYYRKQMTDKREIVENLYE