gi|315441696|ref|NC_014814.1| Mycobacterium sp. Spyr1 chromosome, complete genome. [asmbl_id: NC_014814].5547747, gc%: 67.86% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 2607245..2607260 attL N/A CGGCACCGCCGCGGTG 2621572..2623623 PROPHAGE_Brucel_1330: transposase, putative; Mspyr1_25420; phage(gi23501616) 2e-07 MKTVRLFDMLSYDGQTWQVVAQDGPELALKELISGRIHKIGVAELLGDESFLPDVPDRLPQLDSAAVLETLGPAGRERVLFLRRHVVEVLTGRPPADIDGLDEDSPTPIRREYDSRLPLKDRIAAKVAELAAAKTPVGQRSLERYIKAYREDGVAGLVDGRAQRQSSPTGRIDPALASLIEDAVRAQTNISTGTRSRVIKQVSLEASQLGLPLPSRSTLYRAVQNLEKSRHPFGNATTRRTQANRPDRTWGRQAPSRPGELTEVDSTPMDLMVIYPDGLTGRVDLTLMLDVATRTLCSAILRPIATKSVDAAVLLARALTPLPMQPGWNRSVSFSRSILPAGMIDGDDEIRTSVAAKPVIVPESITVDRGKVYVGSTFLNACERLQISVTKAAPRTPTDKPHVERVFAAINSGFTQYLAGYVGPNVVNRGKAPDSEAMWTLAELQNLLDLWIVAVWQNKPHPGLRHPAMPKRDLTPNEAYAALASVAPTVNVALDRDDYIGLLPVTYRSIQGYGINFESLHYDHPSLHPYRGVKSGLPLPANGKWEVRYDPYRLQSIYIRDHFRGEWIEAEWSLAKQSLAPFSLDVLRAARTAVQKRGESPSGVDVLAEISRIQTGGARTVKEHRAAKRDSVNKPVVPPFSPTVEQAAADATEESLATVAAISTAHISPRLRAARRIDDEDEE 2623626..2624663 TniB protein; Mspyr1_25430 N/A MAVPDSLAAWREFVNRRNGEPEHLTMEQISALSPAEKEDYDQQRFAWLGADIVLETPDTEALTHQTRVLMARNSAESATARRGLAISGSAGRGKSTAALLIGRRHERVMRAKLNRYDDGFAPVVYTVVPPGTTPKMMMLAFANFLGLLVPNKSTAQDLTEQIVGVMRSLSVSLVLVDEVHNLKTNHQAGSEAASALKVFSERLDATFIYAGIDLLQADLFAGHMGRQLKGRMAVHQMRKYEFATKAQRERWTELVLGVEALLPLGRHAAGTLETEATYLYDRTGGSIGSLRALLNDAAIAAIISGEELVSRKLLDMTSTDFAAEEAAARTVAEERATPMPLKRAE 2624660..2625553 hypothetical protein; Mspyr1_25440 N/A MRIAALPVRTRLYHGETLDSYIQRHAARNFCMPSDVDRALRERGIVKSKNRRDPARVQAWLNLAGTSAERFAAPEYVLDQEVTERVLCLHCTRGEPARGRLTGIGLVCVRHRRWLGSPQIDLHGYFPALAAERHFRRHLAARDVLHDSLPMLIGRACASPAIIGASEIDRRRTQFDIDAIDALTYPEQVKIARLLCLPIFLCAATDPDTDAAKRSSLVTRAVAKIIPARDDADPWRATNRVWTTITHLTARRRDARIYGAPMRDTYYNILRFTQEPRDDSAASGWSREAQGRGGYGA 2625543..2628224 PHAGE_Acidia_7: putative helicase; Mspyr1_25450; phage(gi162329441) 9e-07 MELEQATRHTRIDPRLKAAGWAVTQFDPAMPKAIPSQKAVEEWPTTAGPADYALCDEHSVRAVVEAKKQSTGAQGILPQAERYSRAIRVDIAWQGEYGVPFLYATNGEETWFHDVRLPQNRSRKVATFHTPNALRELLERDSDAEFAKLRTIPLNSYLRTYQVEANTAIEQTVADGKRKMLVTMATGTGKTLMTVNEIYRLMKSGVARRVLFLVDRRALAAQTVRAFASFEAEPGLKFDKLYPVYSQRFQQSDFDKDEKFDPNVMPNSLLTNPKLGDAFVYVSTIQRMSINLFGREAGIRFGEGDGGDEDAKKLNIPIHAFDLIVADECHRGYSAKELSAWRDTLDWFDAIKVGLTATPAAHTMAYFENLVYRYDYERAVRERHLVDYDVVRVRSDVRMNGVFLHKGEQVDQVDPDSGARQLDLLEDERAYDASKVEREITAPDSNRRMLAEVKKYAEAHESETGRFPKTLIFAANDLPHVSHADQLVELAKDVFGRGESFAVKVTGRVDRPLQKIREFRNRPNPKIVVTVDLLTTGVDIPDLEFLVFLRPVKSRILFEQMLGRGTRRSPDLVPAKTHFTVFDCFDGTLFEYFRSTTGMTIEPPEGDSKTIVQIVEDIWQNRDRDYNTKRLVKRLQRIDKNMSGGARDLFARFIPDGDVGHFAENLPAKLRGDFADTMKILRDPDFLELCIEYPRARTHFVVAPSVADTVESEILIKAGIGKEYKPADYLQLFVRFVEEHKREIEAVQILLGRPNDWSPDALRELRDVLSRAPEHFTDDNLQRAFNATHHKALVDIISMVKRAAIDEAPLLTAEERVNAAVAKVTTNRQLTDEQAKWLDYIRQHLVQNLSIEREDFEVIPILIDRGGWGRANRAFDGQLDELINELNKELVAA 2628221..2629654 PHAGE_Acinet_Bphi_B1251: putative restriction-modification protein; Mspyr1_25460; phage(gi423261981) 7e-30 MTTGDVVNKLWGFCHVLRHDGIDYGDYIEQLTYLLFIKMADERGAELPQHTDWPYLRKQSGSDLLDAYVEALRTLGKEHGILGDIFSGSQNRFSNPVNLQKLIGLIDQTEWTAIDTDVKAAAFEGLLEKAASEGKKGAGQYFTPRILIQSMVRCVKPDPRASKDFKVCDPAVGTGGFLIAAYEWLKAETKGGAFDRDTAKRIRRQTYYGNELVPRPRRLALMNLYLHQVEPRITLGDSIYEVPGSQRYDVILMNPPFGTKGAGQPPDREDFVVQTSNKQLNFLQHVLTTLKKGGRAAVVVPDNVLFAQQAGEVFQVLMEDCDLHTVLRCPRGTFSPYTEGTKTNVIFFTKGRPTEHTWIYDARSNVPKITKKSRPLSPRHFAEFEKCYGDDPNGLSKRSEKESAEGRWRSFTIDEVKEHHYKLDAFKWIRDDELDDPDELLDPEELITAVMEELQLALDDLADIQRLLENGRTGAEA 2629651..2630919 restriction endonuclease S subunit; Mspyr1_25470 N/A MSKIGKSPLPSGWKECRIGELFESWGGHTPSKSMPSYWGDGVPWASSKDVKAPRLASTTHTVTPQAVEETGLKVCPVGSVLVVMRSGILAHTLPVTVTDVPVAINQDLKAFHSSEPFMNEWLALFLRMSASALLASSRREGTTVQSIQYPLLKGTLIPVPPEDERAQIIGAVRMAVEKQASALPHVKTAARAIERFRQAVLTAACSGRLTEDWRGVAGVGDWDFERAADVCDKVQSGGTPRSGFTDEPGVPFLKVYNIVSQQVDFGHRPQYVPETVHHRVLKKSVAYPGDVIMNIVGPPLGKVAIIPDDFPEWNLNQAITIFRPGDRILREWLYYYLRSGLFMDADLITRGSAGQSNISLTQCRDLQIPVPTIAEQQVLVQRIGELMDHADSLLARVDTAGRRTERISQAVLVKAFRGELTA 2630958..2631473 hypothetical protein; Mspyr1_25480 N/A MPAVAEPVKALAEEVHRIHESVAWSAQTQFEQLKLWRGMNMILGVPAAILAAISGGTGLAQHHAATVPAVLALISAGFGAALTTLNPSRRASQAQAAANAYLELQTAARQLLLVDLNNLSGDGPRDKLAELTVRRDEVNRTADPPGRYAHWRARRNVRKGGQAYEVDAEKR 2631474..2632343 hypothetical protein; Mspyr1_25490 N/A MAKTVDQGFEEFLKRLVPTEAQRSAGASHRASVKGALESKLTVWNFFETGSFSHGTGVRHHSDIDALVSLGNSKPGSSYTALTWVKDALSARFPLTTVRISRPAVQVLFGGGYETWEVIPGFLTSSGDGAMIYDIPSPVTGGGWISAAPREHNDYVNECNKEPGQGNAKALARLVKAWKYYCNVPVSSFYLEMRAAQHVKSIDAYIHVWDICLLLEKLRDNELADMNDPKGASSRFSATSSDSMRADALSKVKTAATRARKALDAYRADDADTAFYYLDLLFGGQFPSR 2633009..2633296 PROPHAGE_Xantho_33913: IS1477 transposase; Mspyr1_25500; phage(gi21230912) 2e-14 MATNKRRRHTPDQIIRKLAEGNKLLGAGQELAEVCRHLEITESTWHRWIAQYGGMKANEAKRLKELEAENARLKKLVANQALDIDMLKEISAGNF 2633329..2634147 PROPHAGE_Xantho_33913: IS1404 transposase; Mspyr1_25510; phage(gi21232569) 4e-53 MRERFGVSERRACTVVGLHRSTMRLTPAPVTTEEAELRAWLRRFSTDRPRWGWRRAAKMARRAGWKANNKRIRRLWREEGLRVPQRRRKKRLTGIGVAVGAMSPIRPNVIWAMDFQFDTTADGRTLKMLNVIDEFTREALAIEVDRAINADGVVDVLDRLALTYGAPHYVRFDNGPEFVANAVADWCRFNSAGSLFIDPGSPWQNAWIESFNGRLRDELLNLWRFDSLLEARVIIEDWRRDYNANRPHSAHGELTPAEFALQWTTTHQPQVA complement(2634089..2635021) PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Mspyr1_25520; phage(gi17975200) 1e-31 MSRFQFVADHLHAFEVKWLCAVVEVARSSFYAWLAGADGRAARRAADEALAERIRAVHDEDNTYGAPRITAELNDGAPEGQRVNHKRVARVMRGAGIAGYRRRRRVKTTVADPANQKVPDLLKRDFTAAQVNTRYVGDITYLPLATGANLYLATVIDCCSRRVAGWAIADHMRTELVIDALKAAAALRGSLAGAIFHADHGSQYTSRDFANLCRDLGVVQSMGAVGSSADNALAESFNAALKREILQDRACWPDAAICRREVFRWLARYNTTRRHSYCRHSSEGDPFGGPVVMRLGVDGSWSTVERTRLG complement(2635018..2635350) PROPHAGE_Xantho_33913: ISxac3 transposase; Mspyr1_25530; phage(gi21231087) 1e-08 MARKNYPDEFKRDAVALYRDTEGATIAQIAAELGVSEATLSAWCKSAGVPIRHRRGVVVAEPVPGAESPEQELARLRSEVKALRATEARLSTERDILRSAAKYFAGETNW complement(2635466..2635702) prevent-host-death family protein; Mspyr1_25540 N/A MDAVTVRELSNSGGDVLRRVEHGERIVITRDGTPVAELRPLPRSSAGPAELIRRRKNLPPVNPDALRRDIDNLIDPSL 2636016..2637320 PROPHAGE_Shewan_MR-1: ISSod5, transposase; Mspyr1_25550; phage(gi24373965) 1e-22 MLTVVHDTDEANANDGGGRSLLDEIVRDGARQMLAAALKAEVAAYIDAHAGELDESGRRLVVRNGSHAGREVLTAAGAVAVTAPRVNDKRIDADTGERQRFSSAILPAWARKSPQMTEVLPLLYLHGLSTSDFGPALEQFLGSSAGLSATTITRLTSQWQEEAKAFGARDLSGTDFVYLWVDGIHLKVRLEQEKLCLLVMIGVRSDGRKELVALADGYRESTESWADLLRSCRRRGMIAPVLAVGDGALGFWKAMREVFPATREQRCWFHKQANVLSCLPKSAQPGAVAAMREIYNAEDLDHAQVAIKAFEIDYGAKYPKAVAKIVDDADVLLEFYKYPAEHWIHLRTTNPIESTFATVRLRTKVTKGPGSRAAGIAMAYKLIDAAQARWRAVNAPHLVALVRAGAVFHKGKLLERPADITPPEPAESTETEVA 2644937..2644952 attR N/A CGGCACCGCCGCGGTG #### region 2 #### 4767385..4767396 attL N/A ACGCACGGTCGG complement(4777133..4778353) PHAGE_Equid__9: envelope glycoprotein J; Mspyr1_45990; phage(gi216905924) 1e-07 MSSARHVGRIGALALALGIGIGLGSAAGTANADDSAVSNSRRAAASADAAGGPSRGPATNSPDRDEPATAPAARTRAQAKPSSSRVSEARARKSDRLDDISDGDISNGDISDDAAEDRTPDADADADVPVTSAANSPEPPARSTSLWTVLTAAWRQPGRSGTDATAGSQVTDPRKPTVDDPDIPATAPLEEPDSSPLPVHSPTAPDVPSETRTVVTIGGLGSTPEEAGDYLQGYPKSPGNTWIPLVYPAAARQSSITQGAANLDRLLRSTTGFVDVIGMSQGAQVVGEWLSSFAQDADAPEPDRMRFTLLGNPSRRLGSNPDLMGWNFRRVALTPEDTAYTVRDIAKRWDGWANWENWPNITRESGTELIRLFLGMFTDHRGYDNVDVAALMVRAVVGNTTYYVAP complement(4778524..4779174) ADP-ribose pyrophosphatase; Mspyr1_46000 N/A MNAREYRDSSRKRLTDYPRPSVAVDSAVLTLDEQGGLVVLQVRRENRRGWGLPGTFLHPGERLSDAVKRSLRVKANVEGLDPRQLYVFDDPDRDDRGWVLSVAHVDVVRPERLADRFAESTRLMPVGSPGRLSFDHADIVARALSYLRDRYARSPDPDHLLDDEFTIRELRLAHEAVAGEPLQRDWFRRAMEPQLVATGVMTSRGRGRPAELFRRP 4779244..4780200 PHAGE_Parame_FR483: hypothetical protein FR483_N170R; Mspyr1_46010; phage(gi155370268) 5e-12 MTSHDDRIAGVLLGTAAGDALGAPYEFQPPRGPDLDVRMAGGGVWEPGEWTDDTAMAIAIAEVAATGADLCDERAQDAILTRWREWSHHTKDIGVQTSSVLRAASRGSAITAARARDASRAHHARSGRSGGNGSLMRTAPVALAYLDDEDAMVEAARAISALTHYDPEAGDACVLWCSAIRHGVLTGDLDVRVGLRHLGDEGRVTWSERLDLAETSRPRDFPKNGWVVSALQAAWSAIATTAGSEADPDAAGTGHLPRGLDAAVRAGFDTDTVAAIAGGLLGAVHGASAVPQAWRELLHGWPGLDAAELAELAHAAAR 4780221..4781279 PHAGE_Caulob_phiCbK: putative Ser/Thr protein phosphatase; Mspyr1_46020; phage(gi414087977) 4e-05 MTDGGYDIIGDIHGCAEQLEKLLHTLGYRQDGRGGEYRHPQRRAVFVGDLIDRGAGQRRTLEVVKAMVDGGSAYAVMGNHEFNALAYHTESPPGSGKYLRAHDDPDDPRSAKNTDQHQAFLVQVKGTERSHYLRWFTTLPLWLDLGGLRIVHACWHDESIAVVQRECGSSAPFSDVRHLIAASTPDKPLYTAVETLLKGPEISLVAHGQQPFKDKGGHPRKSARLRWWNGDARTLRELSEVAGNYTTVDDKPYPPLPDLDVSAVSAPHLYTAQVPVFYGHYWRSGEPERGGDWTDYTACVDFSAVMGGSLTAYRWSGEPTIRPEHYVGVPPRSGSAHPSTNDTPPARNSSNE complement(4781228..4782148) hypothetical protein; Mspyr1_46030 N/A MGFCVFCGGALTDAMRCHSCGAVNIAGTWHESAYSGGTGGGWQPDPTGRHEGRYFVGGQPTDLIRDGGVEALDPVGRHELEPAGVDRLPVSAGRRGRRGWIVAAAVLAVLAIAGAGVGAYAYVNRDRTTVDDRYLVALKQSGFAGEFNSDANAVAHGKQVCRALEGGGPQQGMPADEVAVQYFCPQFVEGFHVLETATITGSFTLNDEDPNRYSPAIEVDGSSCVGAGGYSDVNPGTPVTVKNGKGEILTTTYLEDGRGGRFRCTFGFTFEVIEGQDRYVVAVGRRGELSYSFDELRAGGVSLVLG 4782216..4782506 PHAGE_Entero_4795: putative transposase OrfA protein of IS629; Mspyr1_46040; phage(gi157166066) 4e-11 MAKKYQKFSPEFREETARLVVDGQKSIAEVAREHGLSDTTVGNWVRKYRETHATDEPPLELSERARLRELERENREMAMELAFLKKAAAYFAKEPR 4782503..4783213 PROPHAGE_Escher_CFT073: transposase insF; Mspyr1_46050; phage(gi26249410) 7e-31 MSQKYAFIAAEHADGATFAGMAPTIVQMLKWLGVSKSGFYEWWGRPASAAMCRREELKLKIAALFTSFGAVYGYRRIHAELVRAGERVGPELVRTLMRELNLVALQPKPYKRTTIAGESATAVPDLVARDFTADRPGVKLVGDITYIRTWAGWLYLATVIDCFNKEVIGYAMADHMRTELATGALEMAARNHALEPGCIMHTDRGTQYTSTDYAIKIADLDMRASLGRTGICLLTG 4783297..4784379 PHAGE_Mycoba_Brujita: gp33; Mspyr1_46060; phage(gi206599577) 5e-11 MTIQHQLRLQAGTDVAWVLSGPGCGKYALVNEYLRYLADRNYSPRTLRAYGYDLLAFCRWLGSVDVELSSVTTETVLDFMRHCRQTPIAGRPTNVVSMTGTRLDRYSSTTINHRLAALTGLFTFRELRDPGLRTPIPSGREARRVSAEERNGLLGHLVRPKRRSALRLREPRRLPRALNRRETAELLSSLRTWRDRALAGLMLLSGLRSGELLTLDVTDVDIGARWVKVMGKGAKERRVPLDVEVAGLIQTYLLVERPESDSNRLFLVAKGPHRGQPLTAAGLRTIFRYHRIKSGVLAGHPHALRHTFGTAMAEAGVDLAVMQALLGHAHIDTTARYIHLAPTHVKAEYDAARTRLRSHT 4784345..4786258 PHAGE_Escher_HK639: integrase; Mspyr1_46070; phage(gi356870629) 1e-09 MLPEHDYAPTPETPAQIYAAYLVHLQRRDRGNTAYAQAARSFLRRWPRVQSWADIPLDEQLAANCSTRPFVTFLMVSRRLQPGYDYLVHRKLSSLWHELTDSCLQPDLDQFISAALELGFTERVASAIGSQIIARLLIQTGRPLTGLRESDLQELLHACHVRQERTGRGAKHYRSTTHSARQILFHLGILDTQARPAVTALTLEQRMVDVPVALRPAFVAYLNRKYATCVPKTVSSLATRLAHFGRYLAAADPSLTSLNQLDRRRHIEPFITSLTTATNSVTGEPITVADRIRRIHAVGNFLAEITEWGWDDAPPRRLIFRTDLPRPPRCLPRYLPVDSDRKLTAALAKSPYRLAADALLVQRACGLRIGELLDLELDCIHEIPGQGSWLKVPLGKLNSERMIPVNDEVLTLVDRITTTRSSGRPMIHPRTGAPADFLFTHHGKRLSQNAVREELNRAAQAASLGHITPHQLRHTYATALINAGVSLQALMALLGHVSTQMSLRYAHLFDHTVRTEYERALDLAKSHIGALPKTAVGLPITDITGTGWKDTPAIKSRLAGGYCLRAPAQGSCPYANICEHCPSFHTDSTHLAVLAAQRIDAQDLAADAEKRGWIDEAERHHNLVSRLDALITGSASA 4789945..4789956 attR N/A ACGCACGGTCGG