gi|292654178|ref|NC_013967.1| Haloferax volcanii DS2 chromosome, complete genome. [asmbl_id: NC_013967].2847757, gc%: 66.64% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 231452..231465 attL N/A ATGGGACCGCCCGG complement(231538..232569) XerC/D-like integrase; HVO_0258 N/A MNGPSELKPREAVRRYLDRRGTELSESSIKTYRYRLKLWVEWCEDQNIERVSDLNGWTFEQFEAFRAGQGIASPTLHGEMETLLGFIEYLERIEAVEDGLSKKVHVPSVPMSERSRDTMLVPDDALRLLRYYRSHSSVRGTRFHAVLELAWHTGARLGALRGLDLRDYYPDEQYVEFVHRPESETPLKNQMNGERTVSLLPEVVESLNTYIEKFRPDGHDDFGRSPLFVTHHGTRISKNGFRGWMYQATQPCVAGPCPHEYEKDSCEFAGSYTQGSKCPSSRSPHHIRTGSITWHRDRGFPAEVTAERVNASQEVIEQHYDKASQRERMELRRRPHLDKLRIE complement(232566..232742) hypothetical protein; HVO_0259 N/A MQMTYYPTCAVCRMEVDPSEDYVSVEAEYRFTADRNDVDDYYLHWRCAMSVFDGWGEP 233415..233702 PHAGE_Archae_virus: hypothetical protein BJ1_gp20; HVO_0260; phage(gi119757005) 3e-08 MRKSASWMTIWDDRILEWAREHESASAAAMKDTEYFQVSRSSLSRRLSKLNEKGLLQHLGNGVYVITATGESYLEGELSAEELNGENGEEGSASA 233714..234040 putative repressor phrH2; HVO_0261 N/A MRKSGDWMTIWDDRILEYLLEHGWGSPETIHWEIGRETTLHQIRERCRVLCHAGLASPFIDERSADMFEITIWGQLYLEGKVNAGLIRPLPKPRPPDKVRPRYWSQIA 234157..234963 hypothetical protein; HVO_0262 N/A MEYDRKVRESLTDFVELEGAVAQGDSEEWYFGRPEFDANMIYGKFGKVYADEPLTYDDEIGDFVEGDEPNKEADYSLFAIDLENNLVIFSSTYRVRHRNFTKYLKKGYDSFTGGDASIHLELVRNKEGVETVIQNYPVHKIHAELVPSNPSPDEEWEELDESLREMLADKLGITAEQYNDGGLDFSESFLSQVASMSQSKYGESWEITYSDDDGEFKVISSDDDPASKVIDEEPTTTGGLKAHIEGILSYGLTFLDSVPHKASSASCF complement(235110..236276) transposase ISH51; HVO_0263 N/A MSNNQQTDDEIHEDQLLNFLVNSLDEEVALSLAENAELDAEDIYEVLVGACADGTSVSTLCKRSEDAPHENSVLYHLRTKFDLETLEQIGNTLLQKDILNVLPQQVEVCADLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKCLTLLQAHNHAYVMPIVRWGQTIKRELSEGWSRVIQHSLTAKLDGHSWTVEFPVYIDCTYQNGRYDEHGVARHGYAADAPFIDSPRDARYHYAKRFGIEASYRLSEQSIATTSTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWEWSFKEFINMVRRAAWTALAVRRAVPANRPPDDRFHR 236618..236932 hypothetical protein; HVO_0264 N/A MFEYTVALAIITSLLGSILQTVEYSEYMFWIFVFFFIYLLLSTMQIVSTIIEYGDKIGEFSKANNFEPNEDLKKDMQDLIQEHGNFDEDDNQTRNRGENESESE complement(236934..237194) hypothetical protein; HVO_0264A N/A MTKRTSLKLTDERQLLFDKASEIVARDVSDDPPRSDVIDAALTHLIESYENLEEVRDAYPPQTVKDCCNTSVLGMRYRTSLESQWR 237481..237741 hypothetical protein; HVO_0265 N/A MASATRDDNGEEGVEFIHEDDGSITARDIETGIASFGETKSEALRMLSEALLLHEGGGEPVTDEDLEELGLDTDEFDDRELPDFMQ 237743..237988 hypothetical protein; HVO_0266 N/A MARTTFSGREVVKALTRHDFEPAGRTGSHVQLRYEHPETDEVRTVTVPMKSDIPTGTLQSIAKQSGAKDFHSWCEWIEQTL complement(237992..238198) hypothetical protein; HVO_0267 N/A MFRKLRNHDGTPLIALDKNELEMDGVLENGTAPEGKQMHVQRLDEGVYVVRNVTDGGIAELPESIPHR 238338..238736 PHAGE_Haloge_1: VP2; HVO_0268; phage(gi394922867) 3e-50 MEFDPEDAAALVATFIGTTAMAGIASWSLFDVTLSDVAFQLAGNDVTLATLLTLGALGVTILTNDNAELSTLHQQAKDLDNYYYYSIVASVGLLVGWVFFGDVSSFVQSQDLWGVGYVAVSLTAQMAIGWML 238733..238948 hypothetical protein; HVO_0269 N/A MNLDLDDLDLETVAIIGAGVGSLDAGLSAATDITLLSDLLGGSLETGLIAVGAAGGVVIADKLGLVEVFES 238945..239475 hypothetical protein; HVO_0270 N/A MRRGRATLALVGLLVAAVAAVAFVGLGAATVTTDSANFTSVGNDSLANQTIDVTNDTRSLYVELDNDTATASEPVEVAVFEVDADGNETEVDRVQISAADGTTELYEFDALDPTNVSTYRVEVLGTASAIDSSALDVGTVAAVSSGGGFLGGSSGGIGIGAIAVVGIGGYLALKED 239482..241095 PHAGE_Haloge_1: VP4 precursor; HVO_0271; phage(gi394922869) 7e-126 MLRLASTYAAVGLSVAAAYLAGVHGDHHAAAIVAAVAVLFVALRLSFGDVLRLGALDADRVKVKARQLGTLAAVSLVVTTVATSGVVPGASPVGDASAEWVDCSLSDPLLGAAFNTLTGTDTGCRWESGEQIDYENVSKTDAYASALGIADASESYTTTTSNFLEDTRSVAWSKAKITIVNELNNGSTVSQAKVAANQTVAEYYTGVQRNVIADWNAKTYTLGYLHTESGLALTPDGFSHITEWDNKTYTLSDGSTQTLRAMDYSTNGDYHVAPETTIMPRSTADPGITTMGSIQAEDPSDGSTTHVLSAVAYAEILDNTYNQSNQIQANVDEYADDAYAQYQAGDINTSDLLDPTTIASQAATDYNSTGYYSFAAVQLASLGASGDLNASHTIETGDGTTLNGTLYYTGDDAPAGGWVTNETYTVSNFSGTFYVAAQQQDGNGSIVDLSTYENFTIVDAVNTRTGESLNATQPETYIYDSTNASALADEIDRLRDLRAEYEQAGGSGGGGGIGIGTEDRLIIAGAIVALILVATRN 241129..241704 PHAGE_Haloge_1: ORF5; HVO_0272; phage(gi394922870) 2e-24 MRRTIITLVILIAVVSPALVGTVAAQESTNSTTTTAPSTTPEATQTIELSPTTRIKSWSFSNGTFSLVVEADIPTRIAITDAGELSRILSEGDGAAAGKARVRRMTLTPGTTVVKFRAESVGDASAITVSSSNADGIVAIRSDAIKTGNPPVEYGTVQTLLASTAVAAAGGTFLWVRKKRNEKQLEVEREW 241698..242492 PHAGE_Haloge_1: ORF6; HVO_0273; phage(gi394922871) 4e-73 MVNDWVKLGAVGAVFAYFGGYQFPEWAPLAASGLVIAGIGALFATGKINDLLPDPPRVRLVQVNANSDDPLACWSLSPDKFAEMQVEWGPLYPHEQAHGDVYECYAYDPSSNVAVGTWRRSLPGSSLVGRHDTDDVLDVVGELRGDLEPAARRGQELRQALPAIVRRVKHDTMEAQNAALDPSAPMITDQPTVDEIITSELPEELRPGRLQNGDLRDLLEAAGDQDDNRGDWGDGLGMVFDDDLADDALEPVPTDPLVNDGGNR 242489..243640 PHAGE_Haloge_1: ORF7; HVO_0274; phage(gi394922872) 7e-112 MSGRKQGDSAVYAAAQGREFLRGALRDKSNEYIREFAGMIDDPDVLDFLNRYCSIYEERGKNFLETHVGRHVVRSAATSMADRAYREGNVSQLQGMVGLTNQKRDGSEAIVEAAKRLADEGAIYLVLGPPGAGKTAFALDVARVFGSLTGGTVLANVAWDGADRVTTSSGSMLDAMGSTDGQVLQLIDEAGQSLTSRGAEAAITDEFVKSLKYVRKKEDGDTYAKRGSVLLIGHTRKDTAAEIRRLASGAFVKPTRNDPGRVVFLDSEGGADSFEEAAEFTGVTDTREKYDEHEASHFSVTLDGGDDDQDDSPDPNQIRWESAVATVIKACKPWDEENGMSYPDAAELVIFGDSWVGNRVREWKRGDHRDIVSSPEGDFEWRR 243876..245228 PROPHAGE_Escher_MG1655: IS186 transposase; HVO_0275; phage(gi90111427) 1e-06 MGSMTYSPPDSVIVDRIQRAFPSDELRERARATNLVQRERKFDIVALFYTLSFGFAAGSDRSLQAFLERYVEMADCDELSYASFHDWFEPGFVALLREILDDAIENLDTGREDLNGRLERFRDVLIADATIVSLYQDAADIYTATGDHQAELKLHLTESLSTGLPTRFRTTDGTTHERSQLPTGEWVADALILLDLGFYDFWLFDRIDQNGGWFVSRVKDNANFEIVEELRTWRGNSIPLEGESLQAVLEDLQRQEIDVRITLSFERKRGSGASATRTFRLVGLRNEETDEYHLYLTNLAREDYSAPDIAQLYRARWEVELLFKELKSRFGLDEIKTTDGYIIEALIIMAAISLMMSRVIVDELRSLEARQREGEAAADADSSASRLPRRRCSLAVERHGHLIQLYLMIELGYELPDLDELLLWASRNPNPHRDRLREQVERGEFGFDRY 245331..246683 PROPHAGE_Escher_MG1655: IS186 transposase; HVO_0276; phage(gi90111427) 6e-06 MGSMTYSPPDSVIVDRIQRAFPSDELRERARATNLVQRERKFDIVALFYTLSFGFAAGSDRSLQAFLERYVEMADCDELSYASFHDWFEPGFVALLREILDDAIENLDTGREDLNGRLERFRDVLIADATIVSLYQDAADIYTATGDHQAELKLHLTESLSTGLPTRFRTTDGTTHERSQLPTGEWVADALILLDLGFYDFWLFDRIDKNDGWFVSRVKDDANFEIVEELRTWRGNSIPLEGESLQAVLDDLQRQEIDVRITLSFERKRGSGASATRTFRLVGLRNEKTDEYHLYLTNLARESYSAPDIAQLYRARWEVELLFKELKSRFGLDEIKTTDGYIIEALIIMAAISLMMSRVIVDELRSLEARQREGEAAADADSSASRLPRRRCSLAVERHGHLIQLYLMVELGYELPDLDELLLWASRNPNPHRDRLREQVERGEFGFDRY 247743..247859 hypothetical protein; HVO_0277 N/A MNTWAEKHRTKIELVGVIAALIAFFAFLIQALDVIGWI 248186..249184 PROPHAGE_Shewan_MR-1: IS110 family transposase; HVO_0278; phage(gi24375433) 1e-22 MYLGIDLHKRYAQVAVMDLEGEIVEEVRVKNANLDDLAQRYAGSRAVIEATSNYYHVYDTLAEYLDVTVAHPGKLTLIARSDKKTDRVDAKELARLLRLNSVPQSYVPTDEIREARALVRGRQTLVEDRTKFANKIHGLLADNGITQTVKPLSVEGREFLRELSLPSPWDSLLDSYLDVVETLTEQMTQLEAAIEERAGSLKETQLLMTIPGVSYYSALLVYAELGEIDRFDGHKEVVSYMGLNPTIRESGDSRIEGGISKRGSGRVRWILVQSAYSAVYTCKDAYLSTFFHRLNRRMNSKKAIVATARKLLVSMYYMLVREEVYDPPGVSA 252025..252038 attR N/A ATGGGACCGCCCGG #### region 2 #### 1294959..1294972 attL N/A ATGGGCGCTACAGG complement(1295035..1296081) XerC/D-like integrase; HVO_1422 N/A MSELESLEPARAVRMYLEARQDELADWTLKSHKYRLRAFVEWCEESGVDDLTELDGRDLYEFRVWRREGNFGVEDGETPEEIAPVTLKSQLTTLRAFLRFAANIHAVPEDFYERVPLPKLSGTDDVSDSTLEPDRATDILEYLHRYHYASRRHVEFALLWETGARMGAIRGLDLRDLDLDGRTPVVRYKHRPDQGTPIKNGEKGERFNSVSDRVGTMLQAYIDGPRVDKTDEFGRKPLLTTSHGRVSASTIRQDVYVVTRPCWLNQGCPHNRDIETCEAVELNHVSTCPSSRSPHDVRKGVVTLYRREEVPRRVVSDRLDASDLVLDKHYDRRGERERAEQRRNHLPW 1296636..1296893 PHAGE_Archae_virus: hypothetical protein BJ1_gp20; HVO_1423; phage(gi119757005) 2e-12 MRRRADWWVLADDMILEYISDEGTGTPKVISKEIDRSQGYVNQRCSLLESYGLLTKVARGVYTLSEAGKQYLSEDLDASTLEKSE 1297044..1298123 hypothetical protein; HVO_1424 N/A MKRGIDTSEVEQKLPITTELYGRAIPSGIIYDPDYENDALPEFLDDEDWITYIPNQDGELSFVKSEPITSVYFGKEPENPETDINLQFFDVYYQHLSFPNIMGLMPSLLDDIRNLATVLSKVAYYQSDLSDLNAAIQQFIRTELEYLFMVSRSAYDNLQFIIANTWEKLHTIDGDEDYSAQLPTSSFKDVALSGNDPVPVEDLEDKYGLPKALAEFYSDEAVFFSKIREFRDSVTHQGDSPKTIFIASDGLAVDTTKEPYCNFNVWEDEHIVNNGIAPLWPFIAHVVDQTVSALKRFIVGLFDQRIKVLPPIAKGYDVYIRGGNVGNLNHLDSLMHDDRWGKEFIKSVEERVQHSPPSN complement(1298230..1299027) hypothetical protein; HVO_1425 N/A MYRYTPDEIDYERANHQAKVQDRKNLDVKRIGNLGELAFEQFCREYLPVELWEWKNEEAMRRCNPESFSSYDFEVFGYEVDVKTSRDVSAFLPETLLDNDPDDDIIVMVWHRDNEDSLILLGWERTETLKSKAASQEKYSGEAPEKLDHLAARPMNELIDLGPNTAYMNQKPENPFSPGDRVKKKGDKDASVAIVVEVLPPEQNTGAYGVEMEGEAVSVAFPSSLDEGPGNWETIHPALYASYCYDQNIRLYTYKHSNLEFAEDE complement(1299309..1300286) PHAGE_Haloru_1: VP8; HVO_1426; phage(gi226596537) 9e-83 MTDERLLTAAKLYEQVRGRIDGDHRLLDHAGLPVSKGDHANLSFLNSLDLTEDDELADSFAETSLGRLVDSSLRTQAATRAVQSSHATALSYLVGVTQQDLDASSLTLPLRLVDELENGGGLTTITGAGNPNTGKTNTMFLLNGDLARAHFGDDLLVISNVGTWDGADIVVRSMYDLMDVLLTHRERPKTVTIDEGSTHFDARTFSREVASQWTPAIKRFSKLGVESVGVVSHTGKDVHPEQKRLSTLSFYKEAQDEVTFYRDWDADSDSPDGELFGGSLVNLEPTLETYDPDDAAPWAWNLPSDLFQEQFENWSEFHKILQNSN complement(1300408..1300797) hypothetical protein; HVO_1427 N/A MKLELELSTREQYIIALSLSVGIVAGLWFGILMIPPRALDVPMRFLDDGAVSASYYPVTNTHLFVSAALPLATAYLVRNHARDDGTDDADELMPDRSDGDGDGRDSAHDLDGSSTSEFGPHPLDGGESA complement(1300794..1301657) PHAGE_Haloru_1: hypothetical protein HRPV-1_gp7; HVO_1428; phage(gi226596536) 4e-26 MSDDAESSAEAQRETPDEPEMGAASTTVAPDRDAGRLVTAFVWVMRYGVHLAVAGSLLLVGLVLVFDVRVPRSLQIIGLTAGLSAVIAGRWVGGQAVDLMGGPQMMWLVDVDLLDRDGAGVYTCPTPRWSEWTVVDGQLWWATPNLAFGRGVDLDAREVAGTWVGSLPDPVLARALEYLRYNRKQLEPKARKGESLEINSFAIVRAAAVKTVKHVVRTFEKGALPDDGDALHAEIDSVLEDFDLDGSDSIFDEDPTEWAPGDGDPAPDPLADLDQRRKQHAANGESE complement(1301654..1302247) PHAGE_Haloru_1: hypothetical protein HRPV-1_gp6; HVO_1429; phage(gi226596535) 3e-10 MTRIHTIILVSCIALLLAASGTVAAQETATASAPTETTTAAAPTTASESSNETTYYGDVAGDRAVRIVSAEYVDGTAVLVLESDLPRTVTVTAPTGSTSTGAAAGNLVRRPIPPGRTTIRIDSPEPRVTLVTSYSVENGRYTEIRFDDGGSALIAGPFTGTDVRDAAIGGALGTSFGALLIIVRRRFGLHRDMERVA complement(1302282..1302455) hypothetical protein; HVO_1430 N/A MLLWFLKQLPIGTIAGAVVLAGALQLAGIDLVGMGSDLLLDLLGVPDWSGDWFGSLL complement(1302457..1303896) PHAGE_Haloru_1: VP4 precursor; HVO_1431; phage(gi226596533) 1e-90 MSATLGFQDCDVSDSAISAFINSLINPNGDECRFNPTDSTLDLDGTQDKVELYSAASAEKTSLDSYNTAMDNYLNDTESVAWMKAQVAVAEAYEDGKTKEQARIDARRAIADYYAVKQKNDIARWNATVSAAEVSIEERSESEPINNSTFVTKDDFAQVDSGSGWSVSKTYEGLNTSSVTLVNDSSADVLAYNYTIGDGYNSVNTYETYYVTPARHEWLQIDGNFGWGFRGWEIAAPNSNYDSMTFIEHQSFADRWARYETKNDDLQAEASNFVNATYDDFAAGNINSSDVISANTAMFEYGTQSGSDSTSLYDSTAALALMGFDVPDMQSSGLMNVTDQSGTANVTYQGLVLARSAPNGSWSANTTYNASAIDGPVFIATATGEKVDLDGTFTITEITARDGSSVQSQNTTQYVYKTTNTSEFVNMTNELESLRQDIEEREQSSGGSGGSGGLDSQALGIALLVGAAAVLLIQREGNE complement(1304083..1304490) PHAGE_Haloru_1: VP3; HVO_1432; phage(gi226596532) 2e-36 MASRYSQGLSGLASDYAMLRTIPALLSVVFVATGLYAFGGISDITITWLSSYTLTSEHATLGGILVYAVAFMSSETKSLEHYEYWEMAFIVASPAVILGWQYVTEIKDLLLGLGDPLGAQVAFLITVVGWAVAVR complement(1304490..1304843) PHAGE_Haloru_1: hypothetical protein HRPV-1_gp2; HVO_1433; phage(gi226596531) 2e-12 MSFDDFEETQVEDDYDDGVEEIKFEVDEPVIGVIVDIDHDVGPNENDVIHLARGGDLGDRVKFWSNGQIRRTIDKKGLGNGSWLAVKKTAETRTYEIEHDDGSTEEREYHVFDVRGE complement(1304945..1306849) PHAGE_Haloru_1: hypothetical protein HRPV-1_gp1; HVO_1434; phage(gi226596530) 1e-23 MSVGKRSSSEIADVWGSRLRPDRCKDTYLVDYLGDLGLLAYGYDPADPDDDLELRGRDRDRVRLVKRISTSPEGIYLPTLVSECVKGQYIGQCERFDGSDPDYQFVYRFLNDLDGHDPQLIEKRQSDGMTMVTPTIRLLDLISEGITQTTRERDDLLYDRHFCENYLRTANKVDDWGRDLLEDSLHRYLKRIENYQLLFDVHFCGRRGGDTTRRMTKQYNTRFNSQGRLRKTWARYNSALEHAYEKYDNAVLMTLTTDPGTYDDPTRPDPRSLYDGISSINPNFNRLLSYFDSDPSTKDDTRRDGVPSWSPALDGKVTGRPRYRPPYLKALEFTEKGYAHLHVLMFDVPTRESDGMPFLIDKAELERKWKDYGQGQIVDLYPLVFREDLDEVGNFGTKTLVDDDGDQFEVPVSKGFVDWYRYGDHDHSDEWIAKNARSHDLIEFYDDESGEDGDEQMQSRTAGAYLGKYLSATFGSLLEASESFEDAKESDSYADKAATWKLGLYWATGRRFWSISRDIEKAIERPEHLQDPDVRHAVRELSIDSLQLACDGATVEELALDDVVTPGVESTLPESADFYCHIDYLGCYAYWDMPTADATATNLEHVEDYVASGGQPEYPDVGGEKPPPVADVWG 1307486..1307499 attR N/A ATGGGCGCTACAGG