gi|256370824|ref|NC_013124.1| Acidimicrobium ferrooxidans DSM 10331, complete genome. [asmbl_id: NC_013124].2158157, gc%: 68.29% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 428637..428648 attL N/A CGGTCGAGGCAG 440243..441286 PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; Afer_0442; phage(gi16130960) 4e-67 MTSARSLDRLELVDAGVVLAIETSCDDTAVAVVAGGRVAANVVRSQAALHAPFGGVVPEVAARAHDAAMVEVVEEALAESGIDAHEVEAIAVTKGPGLPGSLVVGVGAALGLAVGLDRPLIGVDHMEGHLYAATIEGPVALPALSLLVSGGHSELVVIEAPFRYRLLGRTRDDAAGEAFDKVARILGLGFPGGPAIEAAARDGRPDAIRFARALRNQGFDLSFSGIKTEVARYLEGARAAEVADVAASFQEAVVDVLVAKLERALESERVETVVIGGGVAANGPLRERVAELARARGVGAHIPARSLCADNAAMIAAAGAARLVAGEHAVDGLDIEPTRSLVGGDDH 441360..441653 PHAGE_Bacill_36: GroES; Afer_0443; phage(gi156564025) 4e-14 MNLQPMEDRIVVRPAESEERTASGLVIPDTAKEKPQQGTVLAVGPGKRAEQSGELIPLDIAVGDTVVYSKYGGTEITVDGEDLLILSSRDVLAKVVK 441656..443290 PHAGE_Halocy_JM_2012: chaperonin GroEL; Afer_0444; phage(gi389060206) 1e-64 MPKILEFDESARRALEAGVNKLADTVKVTLGPKGRNVVLAKSFGAPTITNDGVSIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAMIREGLRNVAAGANPMALKRGIEQAVAAAVESIAEQAKPVEGRSDFAQVAAISAADQAVGEVLAEAIDKVGKDGTVTVEESNTFGLELEFTEGMQFDKGYLSPYFVTNQDRQEAVLENPYILFYATKISSIHELLPVLEKVMQAGRSLLIVAEDVEGEALATLVVNKIRGTFTSVAVKAPGFGERRKAMLQDMAILTGGQVISEEVGLKLENVTLDLLGQARRIEVTKDETKIIGGAGQKADVDGRIAQIRREIEETDSDWDREKLQERLAKLAGGVAVVKVGAATEVELKEKKHRIEDALSATRAAIEEGIVAGGGTALIRARARVNDVVAKLEGDEATGATIVARSLEEPLKWIAYNAGMEGPVVVQTVEHESGNVGLNARTGVYEDLVKAGVIDPAKVTRSALQNAASIAALLLTTEALVADKPEEPGQAAAGAGAAGGMGGMM complement(443590..444081) membrane protein of uknown function UCP014873; Afer_0445 N/A MSDLLVIGYPDEDTATQAAQTIEELTDELLIQPDAVAVIVRESDGRFRVQTNHHVVGAATTWGMLWGLLFGFLFFVPVLGVAFGAALGGLTGLIDRSLVNREFAERVRDLVQPGTSALFLMVEHVPSDKVIAALSRYGGTVLRSSLDSKAEAELQEALTGKRS 444888..445208 PROPHAGE_Xantho_33913: ISxac3 transposase; Afer_0446; phage(gi21231087) 4e-09 MGTSRRKFTLEYRTEAAHRVIDSGRSVPEVARELAIGEHNLYRWVREERRRIEAANATGSPPLTAQERTELIRLRRELEELRKDNEFLGKAAAYFAAKPPSKRDSR 445208..446077 PROPHAGE_Escher_MG1655: IS3 transposase B; Afer_0447; phage(gi16128284) 2e-35 MEAEYARFEIKRMARLLEVSRAGYYRWRRTQVAPSRRACARRDLENRVVAVHQASSGTYGARRITAALLAAGVVTSHNTVAAAMARRGIAGISPRRFRPATTHADPKAIYPPDLVARKFDPGRLHALWTSDITYLALAGAMAYLCVVRDEHSRRVLGWSVAERMETTLVLEALGQAVAVRGSHAQGVIWHTDRGSQFSDHRVVAFCARHGITRSMGRTGTCYDHASAESFWSIFKHEFFYRHAFGDLAELRRGIQSYIQFYNHQRSCSKIGYLAPVVFEHLVAEEARVK 446155..446712 PHAGE_Equid__1: envelope glycoprotein J; Afer_0448; phage(gi50313312) 1e-05 MLSQVVAPSSSTQTVTATADGANVSVVVPAGAFGNTTVNLVVTEPTLSDLTSTLSALGLGGSTLATGVGVEVVDAATGQPLTGTFAQPLTVTITSSGITSASKVIEFPTSGSPFVDSSAEVVSGKAVVQVSSDPGFAVATPTSASVPAATSPVTGKDFLPVGIAGGVLVVGGAALIVASERRRHA 446709..447626 PHAGE_Invert_6: 443R; Afer_0449; phage(gi15079154) 9e-08 MSGVRTPRGFLRPAAGLVVLAGVLAACGSTASSSSAPASGSSTAHRGSIPVAIVPVSAGALSLGPLQANGEFSVLAGTPSSKGVFTYQLSTRREVASFSVSNQATAITQLPNGVIAVGLGTGSVGAVDLESSSGQQLASIPVAAPVRGLALGTDGSTIYVLEGTGSTRAVAVLDTATRSAATTLPVNADTVAIASSPTQQELYGLESTGALDVYSTATGQRIGTFPVGHSGVAVTPSPDGTALFVLKGVGGVRNVAVVNLSTEGDVRAIGAPAGGIAIAPTLTGADVLVLAVGPASANVQELPTS 447623..449665 PHAGE_Acidia_virus: hypothetical protein ATV_gp67; Afer_0450; phage(gi75750417) 2e-10 MRTSPLQATADDPTSPRHGVRVEAATGTSTMAWLLAGAVLILWGLRFGVGVAESAGFSLADVVMIGAGVAIIAGSPAIATRPRLHWAVLALVVAAFLAWATQQVLIAPAYATDELAFDQYAAHLVLQGVDPYRVSMAAAFARYQVSPNAFTLRFSGQPVTALSYPALAFLAYVPLLVAGIHAQAGTIVDALAWAVTIVVTFAAVPRSWRPLVLALLSLSAGVAYAVGGVTDALFLPFLVASAALLGRFVRGDSWGWLAPVALGLAMAVKQTPWLVAPALAVVVVRWARSSRSTSWALGRLAWFVGLATLAFLVPNVPFILQDPGAWLRGVLTPLDASVVPAGQGLVALSTAFGIGAGGFVWLSLASVVLLAGGTALVWLGWPRCAWCAWLVPVVALFFATRSFGSYYVNLVPPALVALARWPRGAAPLPRVWYRWALVTGGVTVVCALAWVRSASPLSIEITGVHTSGQLATVARVTLRVTNRSDATLAPAYVSYLAGSYSLPWQLEAGPRVVAPHASVDVTVGAPNFPAQPSVAGGFQMVALAGHAIAPSALYEPGLLHVALVPDAVNIPVALGQQVVLHAELLDRFDQPVREAGVPIFLGQIIYAQRGLLYSSASINGAAPGATPVEELTGPNGVATFVIVDRAAEPDPVSFEANLVSTSGYYPYGYSQIVPIRFERS 452991..453002 attR N/A CGGTCGAGGCAG #### region 2 #### 1348604..1348615 attL N/A GCCGCAGCACTC complement(1362271..1363677) PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; Afer_1311; phage(gi414087138) 7e-08 MITTYVRRELRRRSRQAVLVSAGLAVGIGLVVTVSAATAGVRSADGEVLHSLYGVGTDMIVSKTATPGSFGGERFGFGSGAFNPRAARSARLAGNRLHLTRGQAALPAADVSKVARLRGVAGATGGLQLTDTSFSGTVPTFGSGGGGSFSINSFSVDGVQISSSGVGPLTPSEVTKGAYFTAADATKDVAIVSSGYATSQQLSVGSTLDVGGASVKVIGIATTPTSTADVFLPLATAQQLSGEAGNISTIYVSAQSASNVSTLASEVAKILPGVTVSTSASLASDVSGSLASTSSLLSSLGKWISVAALVMAVLVAGLLMMAAVSRRTREFGTLKAIGWRTRRIVAQVMSEGLVLGVGGGIAGLVLGIAGAEALSAASPTLRATVGRSVAFGGGFGGGGFGGGFAGVRAGLRQAAGVRTVLVHLSAPLQADTIALAVGLAIIGGLVAGGLGAWRASSLRPADALRSVQ 1363910..1363921 attL N/A CCTTCCCCCATT complement(1366330..1366403) tRNA N/A GGGGGTGTAGCTCAGCTGGTAGAGCGCTTGACTGGCAGTCAAGAGGTTCGTGGGTTCGAGTCCCATCACCTCCA 1366433..1367374 PHAGE_Salmon_7_11: hypothetical protein; Afer_1314; phage(gi345461254) 2e-12 MPLVDGPLPVTVAVVASRATAMGEAMDLWVANTDRRWFDFLRQAGLEEVNFWSPSPSPPSSAIAVGTPWIFRLKKPDYALAGFGYFARFEQLSARLAWDRFGQGNGFASFEEFLDQVVRLRRLLRTSYPDRDTKIGCTTLVGACFLEEDRWLAPVPGFEPNVVRGKGYYVNSSEGDAISEWLAQQQAAAALPESVAALPVAGYREALTRVRLGQYGFQALVRSAYGGRCAITGESTAIALEAAHIVPFALEQRHDVRNGLLLRADFHRLFDAGLIGVDPSEWTVRVSPAIADPDENGQLYPTYQGQLAFPPPG 1367396..1367725 PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Afer_1315; phage(gi17975201) 1e-10 MSQTPNPPPGDGPAGRRRGRYPSQFRKDAAALVLDQRRTIADVARELGINEQTLGNWVRQERIDRGEREGLTSAEREELTRLRRQVKQLTVERELLKRAMAFWVKEGGQ 1367722..1368600 PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; Afer_1316; phage(gi24373866) 8e-46 MSRYHWISRQEAKGFSVAAAARVIGVSRQAYYAWRHRRDRGEDPEHLVLASELRAIWHESDGTYGSPRITHELRRRGFCVNHKRVERLMRELEMAAGPRRRFVVTTRRGEDAALPDLVRQDFAPGEPKRRYVSDITYVRTDEGFCYLATVADLGSRRIVGWSLGRHMPDDLVVEAIREALGTRGSLAGAIFHSDRGSQYLSRKVRSLLATLGIRQSVGRVATCYDNAVAESFFGSLKRELVARYRFANLSGARSAIASWIHRYNTVRLHSSLGYLPPVEYELSWACREVAVA 1368798..1368809 attR N/A CCTTCCCCCATT 1369144..1369158 attL N/A GGCGCGCATCGAGGC complement(1369292..1370170) PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; Afer_1319; phage(gi24373866) 7e-39 MSRYHWVASQEANGLPVAVPARVIGVSRQAYYAWRHRRDRGPDPEHLVLASELRTIWQASDSTYGSPRVTHELRRRGYCVNHKRVERMMRELGLAACPPRRFVRTTRRGEDTPLPDLVCQDFAPREPARRYVSDITYVRTDEGFCSLATVADLGSRRIVGWSIQRRMPGKQVIEAIEGAQRTRGSLAGAIFHSDRANQYLSRKVRSLLATLGVRQSVGRVATCYDNAVAESFFGSLKRELVARYRFANLAEARSAIAAWIHRYNTVRLHSSLGYRPPIEYELTWAREEAAVA complement(1370167..1370496) PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Afer_1320; phage(gi17975201) 3e-08 MSQTPNPPPADGPARRRRGRYPSQFRKDAAALVLDQRRTIADVARELAFIEQTLGNWVRSERIDRGEREGLTSAEREELTRLRRQVKQLTMERELAKRAMAHSVKEGNQ 1371095..1371109 attR N/A GGCGCGCATCGAGGC complement(1371434..1372252) PHAGE_Mycoba_Tweety: gp43; Afer_1321; phage(gi157311232) 8e-07 MGLANLPGHVRTGKARRAKGEGAVHRYGDRWMARYPLPERLPNGRLRYVSRVADTKAEAVLALAGLRKTAQAGLASRQTIRTLGQLAEAWLTLKATEVRPSTLAQYRWATERIVEALGGRELAAVTTPDVDRFLASLEGLSTSSVRLVRTTLRAMLAYVETSRLVERNVAAASRPARGERATGKAIPDDDLARILEALGGDPFGVLGACQPLSDTSGSVPLCRRAHLLRWVDPDGCREPGWFGPHAHEALGVSTPGSFQRLGPACSEPLSTS complement(1372332..1372404) tRNA N/A GGGGGTGTAGCTCAGCTGGTAGGGCGCTTGATGGCAGTCAAGAGGTTCGTGGGTTTGAGTCCCATCACCTCCA 1372485..1374932 PHAGE_Cafete_BV_PW1: putative isoleucyl-tRNA synthetase; Afer_1322; phage(gi310831495) 3e-08 MAEEYDPPALERSWQERWDNDETYYVSADDPRPKSYVLCMYPYPSGSAHQGHVRNYAFGDLNVRYRTMRGHAVLSPFGFDSFGLPAENAAIKTGVHPRLFTEERIAELKASVKRLGTAYDWRREIKSHDPSYIRWTQYLFLKLYEAGLAYQADAPVNWCPGCQTVLANEQVLPDGTCERSGDVVVRRNLRQWFFAITRYANELLDTLDELAWPERVKVMQRNWIGRSEGAEIDFPLADDPTRSITVFTTRPDTIFGVTFLVLAPEHPLVESITPPERRDEVEAFRADVATRSELERQSDVASLDKRGLALGISVRNPITGDEVPVFLADYVLAHYGTGAVMGVPGEDERDFRFATAYGLPVVETVTRPSDHPGGAWSGDGTKINSGPFDGLSVAAAKRAVIEALEQQGAGRSRTVYRLRDWLISRQRYWGCPIPIVHCSACGTVPVPEDQLPVLAPDDVEFLPTGESPLARHAGFVNTTCPQCGGPARRETDTMDTFVDSSWYFLRFCDPFSEDRPFDIAAVEAWMPVDQYIGGIEHAILHLLYARFFTKALSDLGLIPATLREPFRQLFTQGMIRFHGSKMSKSKGNLVTPQQYFDTVGADALRLYHFFVGPPADDVDWTDQTDEIIEGCARYLQRVWRLAERIGVTDTPTSAPVANDLAIAIERLTQRVTDAIERWSYNAAVAALMELANLLGDERLLAQPDLADFGLARLLTMLAPFTPHITAELFERRYGRNVHREPWPTVDHELLASARTTLAVQVNGKLRGTIEVDPSIEESEAIDLARALPSVDAALAGREPERCIVRLPRIVNFVVR 1389133..1389144 attR N/A GCCGCAGCACTC #### region 3 #### 1480690..1480701 attL N/A CAAGCCCCCACC complement(1480972..1481496) phage tail protein; Afer_1416 N/A MRRDGWLLQQLPMGMTDDDFFVRFVSIFQEVASTLLEDADTIEHIVDPTVTPVPMLAWLGAWLGVSWLDGSLPEATQRRAVRSLGEALAWRGTRRGLTTILEAVTGGPVILTETGGVRRHQDDPASSPFVRIQVASTGWLDDSDFVRLVRDELPVSVAFQVEVAGRRIWPSASA complement(1481505..1483457) PHAGE_Bacill_BCD7: putative baseplate J family protein; Afer_1417; phage(gi422936037) 9e-15 MGLPTPELDDRRFQDIVDEAKRLIPRYCPEWTNHNVSDPGVALIELFAWMSETVLYRINQVPDRLYTKFLDLVGISPFPPAPAHADLVFWLSTVLEHDVVVPKGTQVATAPVPGQPEVLFSTIDDLVIRPPTLIGAMTATADGGGQVRDVWDDLRFEGGVVRCFTSDPLAPGDATYFGFEGLAPGAVIRLNVGASIEGIGVDPTDPPLAWEAFVGESWVAMPVHRDTTGGLNRDGEIVLVCPRALSPLTLGGVRATWLRVRLLAARPGQPPYRASPSLSSVTVNVLGGTVAAEHAATTGPERLGRSDGSPGQEFQLSHAPVLALRDDEVLTTTTPDGVVWTWEPRADFASSTGEDRHFVLDGATGTVRFGPRVRYADGTVRQHGAIPPDGAAIMLSSYRYGGGSVGNVGAETLTVLRSSVAYIDRVTNPFPASGGVDPESVANAKLRGPMTLRSGQRAVSASDFERLTLEASPEVARVRCVAPNLVGDPVRLLVVPRVRGRCEDHQLDDFELSDALVEQVIGYLEPRRLIGTTVDVSTPYYRGATVAALVRAIPGRPSAIVRQRALDVLYQYVHPLVGGPAGDGWPFDADLTAAGVAERLETVDGIEAVEEVLLFEADLRTGERQGRGREVLALDPLSLFLSFRHQVVVR complement(1483457..1483894) PHAGE_Bacill_BCD7: putative GPW/gp25 family protein; Afer_1418; phage(gi422936038) 7e-08 MATREHPTDASVSDPGFVGRGFAFPMRVDVRGGIALSDGTGSTDTAIRVVISTAPGERVMRPAFGCRIWDLLFEPVNANTMGLMAQAVREALAQWEPRIDVENVAVAQDDNDASLVHITVTYRLRATNDRRNLVYPFYTIPREEG complement(1483925..1486573) PHAGE_Saimir_1: transcriptional regulator ICP4; Afer_1419; phage(gi312162868) 4e-07 MSGHDATVSTFVAGIERRFGWHRSLVRRPRPSVGALALRSVRHATIVGRPLSLRSAIGPSLPIGAGTGDRPVRPLGHPFLRLWLAGQGQDDASALADAVGAHAGRLPRVTARQQTPYAPGGGLARLRREVLPVRLVPDVAAVGTVVSDRERGRPRAAARPSPSRSAYRAPRVAPSRRGGSRGSARDGEAGAGSGASAEPASSSDPSTPTATTPAGASPQRHQAEQGAQRQQHRDGASPPEPGLEGRGAPGAPREGGDRPPRSAVGLLDAVTAGRTVTDREAVGAGGATSDGASHAMTFGESLAAGWEAAAVILDGLVRQETYAALARHGSERAGERGPLWQYTSRFPRSEFRRGRERGAPPGRPLRPVRRRTPWLRSIGFDEESQARSTGARVPSARRSMVESGGRRSDVRTSAGRAGSSGIGLSDGGLAARRHAIDAVRGRGQLRRVDASRGVRVDVPIGEPAAPTGDGSVVGDDEAVRRHGGVRRALGSWPTMASRGRRRWERGVATLASSGWVAQGLSVLGSMPRALSDGVVATRGLGWSGPSRPRGRELRPSQVAGRGVESDGRLFASASDAVMADVGSRRGSRPVRSNWQGPRERSQEPGEAVQPLPAVLEPLASALGVRGPVEVQSGPLTRRSLRALGTVAATVGQTIFLERPVDRSPGALGVIAHELVHVASGDTGRAPRLFDDPHLDDEERHARRVGSLVRALVGDEAGDGEHERRLLAAMPPPPRGSRAHNPEPSGTGLTPVLAPPMGPGGDVLASREHDAVLADLQALYARSTSLPRGSSSVSQGSSDARVATRAAPAMMAASESPGSTRRRGGEGSGIEIGGGRMVEEAGPVRPSSAPQAEEFLDWLVEQVERRLARELDARGLRHRPDVL complement(1486570..1487046) PHAGE_Bacill_BCD7: putative tail tube protein 2; Afer_1420; phage(gi422936047) 4e-07 MTTQSGFDGHIPDSSSFLLEVDGTEIGMFAEVSGLEMTVEVAEFAEGGQNGFTHKFPGQIHWPNIVLRRGICRSDALFDWVRRSSGPAFAANQNKLQRSTAAITLIASDGRRLRSWEITGAFAVRWVGPKLAVDAHGIPAMEEIEVAHQGFTSKTFAS complement(1487043..1487216) hypothetical protein; Afer_1421 N/A MKHYPIDVLWQEVIYLAYHLHWDLDDLLDLEHQDRVRLVQGVAALNARAWEEVRQLS complement(1487213..1487686) hypothetical protein; Afer_1422 N/A MRTRYEFVLPRGYIDDQGVVRRRGVMRLATARDELEPLRDPTISGPDDPRLTILVLARVVERLGDLELVTPNEIQDLFAVDLAYLQDFYGVINFGSEEDIEALLAAQERAESQTSPRPETTASETTPPTAAAGSESPPRPPAGGRRAAIEEVPQNGR complement(1487690..1488172) PHAGE_Bacill_BCD7: putative tail tube protein 2; Afer_1423; phage(gi422936047) 8e-06 MAQFNLIKNDPLTTTNFFVEIDGAYVTNVTSIDGLSVEIEVADFNERTKGAQLVQHKVMSKPKWNGELTMKRVAPLNVADDDIWKWFNDLRTKGMGVQNRNKPRRHGSIVVYDSALSETARWNFYDAWPSKIEFASLEASANDVATETITLQYEKLERKK complement(1488188..1489756) PHAGE_Bacill_BCD7: putative tail sheath protein; Afer_1424; phage(gi422936048) 9e-70 MPTYAAPGVYVEEMPSAQKSLTPAPTAIAAFVGFTERAPNDDPSDPEGTRPRLVTSWTQFEELYGSFTPGAMLPLSVYGFFQNGGTIAYIVRIPNTEPADAPSTASLPAADRALGSPVHVESLEQGAPLQVVVRTVDADADGPAPFDLDIVGPDGTTIESFTNLTLDDSERNVATVVNAASHTVRVRVDLADAVDLSSLLEVMRPGTYPLVAPAPHPVPVSPKRFAGSESARTGINGLTIADDVTMVIVPDLVTAATRPDGTIDLAMWKAVQTALIGHCERQGNRMAILDAPPGMTPQQVREWRSDVAMYDSAFAAMYYPWIRVENPVGTNGQSEVLIPPSGHIAGVWSRTDDTRGVWKAPANDTIRGCLDVERSITKNEQALLNPIGINCIRPFGTRGIRIWGARTLSSDSDWRYINVRRLFNMVETTILDGTQFAVFEPNDVTLWEGITRTLTAFLGGLWQDGALFGASPEEAFYVKCDAETNPPAVIDEGRLVVEVGIAPVKPAEFVVFRISQHKQLAG 1490131..1490511 PHAGE_Feldma_virus: putative integrase/resolvase; Afer_1425; phage(gi197322352) 4e-05 MNLTEWARRQGIHPQTAYNRFHAGTLPVPAVRVKQRTILAQPDAATTTPRDMVGLSARVSSYDQRGDLDRQVARLTEWAAKVGLPRARVEAEVGSGMNGSRPKLRRLLADPQVTIIVVEHLTAWLA 1490508..1490753 site-specific integrase-resolvase-like protein; Afer_1426 N/A MNVELVEAARSAHGRRLVVIDDGEVDDDLVRDMTEVLTSFCPRLYGRRSARSRAEKALRCATQDMGPKPPPRRQCHRGRLT 1499983..1499994 attR N/A CAAGCCCCCACC