gi|186897495|ref|NC_010635.1| Yersinia pseudotuberculosis PB1/+ plasmid pYPTS01, complete [asmbl_id: NC_010635].69812, gc%: 44.69% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 10022..10035 attL N/A TTACACAGAATTAT 12078..12554 PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; YPTS_4222; phage(gi17546158) 2e-55 MDFVADNLFNGHRVRALTIVDNFSRECLALEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDFSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPHSSLNNLTPAEFARSHQKGPDL complement(13140..14006) peptidase C55; YPTS_4223 N/A MIGPISQINISGGLSEKETSSLISNEELKNIITQLETDISDGSWFHKNYSRMDVEVMPALVIQANNKYPEMNLNLVTSPLDLSIEIKNVIENGVRSSRFIINMGEGGIHFSVIDYKHINGKTSLILFEPANFNSMGPAMLAIRTKTAIERYQLPDCHFSMVEMDIQRSSSECGIFSFALAKKLYIERDSLLKIHEDNIKGILSDGENPLPHDKLDPYLPVTFYKHTQGKKRLNEYLNTNPQGVGTVVNKKNETIVNRFDNNKSIVDGKELSVSVHKKRIAEYKTLLKV complement(14402..16600) PHAGE_Maruca_MNPV: protein kinase 1; YPTS_4224; phage(gi119964537) 2e-05 MKSVKIMGTMPPSISLAKAHERISQHWQNPVGELNIGGKRYRIIDNQVLRLNPHSGFSLFREGVGKIFSGKMFNFSIARNLTDTLHAAQKTTSQELRSDIPNALSNLFGAKPQTELPLGWKGEPLSGAPDLEGMRVAETDKFAEGESHISIIETKDKQRLVAKIERSIAEGHLFAELEAYKHIYKTAGKHPNLANVHGMAVVPYGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGTIKFIAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGFTESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEPAHVMDENGYPIHRPGIAGVETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTIDEESAKQILKDTLTGEMSPLSTDVRRITPKKLRELSDLLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLKSFNSLILKTYRVIEDYVKGREGDTKNSSTEVSPYHRSNFMLSIVEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEVLVTLSQQGQPVSSETYGFLNRLAEAKITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTRPVVKFGTEQYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRSSLMDEHLVEQREKLRELTTIAERLNRLEREWM complement(16608..17057) hypothetical protein; YPTS_4225 N/A MINTTFTELLPKIASHFGLDKLSQDEYGLCELILNDRVVIMLRADEILNRLTLLGPILGFSGPEARSAASQLFFCYSINALNKDGPCFAWSEELGLIAFKHLSLDELNVENVSKEIANFYDWLSLVSLPAETQQELPLHTQSTQSVKWG 17215..17325 transposase IS3/IS911 family protein; YPTS_4226 N/A MGTPRFTPEFKEEAVRQITERSYSVAVVDHKIRTPS complement(17309..17545) PHAGE_Entero_Sf6: putative transposase OrfB; YPTS_4227; phage(gi41057343) 4e-16 MQSMSRRGNCLDNSPMERVFRSLKSEWLPVGGYMDVHHAVRDIGEWGYKVITTHPHRHNGGLPPCEYEEQGKKATKVS complement(17801..18040) hypothetical protein; YPTS_4228 N/A MSKKHYCRLHDLNISTFYYWLKHHQDDTTVAIPPAFIPARRVIPDNNGTEAVTLNLPNGCSVSCLPAQLRAVMQALSLC 18168..18386 hypothetical protein; YPTS_4229 N/A MRSPLAYGCSVYTVNVVTQLHNDIHKSAYKHKRLYHVLTGQASSAQPVFSMPHRGMKAPADINYNSVDNWRR complement(19213..20079) replication protein; YPTS_4230 N/A MTNHQALFTHHYRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDFSMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLANRIQRSITNLAIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVAAARRSRVEWENQQREKQRLPRLEMDELIAKAWRFVRERFRSYQTERKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAEGRFVGNLDAVRREKARRVKERMLMSRNNNYTRLATGAT 20081..20092 attL N/A CCTTCCCGCACT complement(20388..20642) replication protein; YPTS_4231 N/A MSQIENAVTSSSKRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDLKNELLQLCEDSGLTQTEMIERWIQREKAARTNAA complement(20780..21019) phospholipase D/transphosphatidylase; YPTS_4232 N/A MVNAGIPVRTVNSFKALHDKVIIVDGKNTQMGSFNFSQAAVQSNSENVLIIWGDFTVVQAYLQHWQSRWNKGTDWRSSY complement(21088..21183) transposase remnant; YPTS_4233 N/A MDVHHAVQDIGEWIQSYYNTPPSAQWWITAL complement(21445..21852) PHAGE_Entero_Sf6: putative transposase OrfB; YPTS_4234; phage(gi41057343) 1e-23 MVELCRLLKITRSVYSASLNLRVDVKRLQLRELHQQSRGAAGNRTLSLLMRQSGYNVGRWLAGRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSFHW complement(21879..22196) PROPHAGE_Xantho_33913: ISxac3 transposase; YPTS_4235; phage(gi21231087) 4e-07 MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGVTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR complement(22368..22826) hypothetical protein; YPTS_4236 N/A MGGMAAHWFTYQYAVPFCGRAKTLVTLSNAEGESVLISPQQNTAQDISLFMPRELTVSQGDRVRFTRSDTDRGYVANSLWEVAGFTEDGAVRFRQGDQEKIVDPQKATEDRHIDLAYTLTAYGVQGASERFVIALFGAEGGRKRMATLHLFT 22976..23164 PHAGE_Entero_Sf6: gene 56 protein; YPTS_4237; phage(gi41057344) 2e-09 MRKWIRQYKEEVSGVTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR complement(23493..24791) PHAGE_Cronob_vB_CsaM_GAP32: adhesin; YPTS_4238; phage(gi414087345) 3e-14 MTKDFKISVSAALISALFSSPYAFAEEPEDGNDGIPRLSAVQISPNVDPKLGVGLYPAKPILRQENPKLPPRGPQGPEKKRARLAEAIQPQVLGGLDARAKGIHSIAIGATAEAAKPAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGASSTAQKDGVAIGARASASDTGVAVGFNSKVDAQNSVAIGHSSHVAADHGYSIAIGDLSKTDRENSVSIGHESLNRQLTHLAAGTKDNDAVNVAQLKKEMAETLENARKETLAQSNDVLDAAKKHSNSVARTTLETAEEHANKKSAEALVSAKVYADSNSSHTLKTANSYTDVTVSSSTKKAISESNQYTDHKFSQLDNRLDKLDKRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSNVMYNASFNIEW 25209..25221 attL N/A AATTTTTTTATTT 25400..25780 PROPHAGE_Xantho_33913: ISxcc1 transposase; YPTS_4239; phage(gi21232565) 3e-32 MVERYPRDGFFKVFQILRRWGYVWNHKRVHRIYCLLKLNIRRKGKQRLPARTPSPLAVPERLNLSGAVDFMHDALICVDDYNREKLAIEIDLNLPTQHVIRVLDRIVVNRGYPVMGFEVQWDENVR complement(25777..28092) PROPHAGE_Xantho_33913: Tn5041 transposase; YPTS_4240; phage(gi21231545) 3e-30 MPVDFLTTEQEQNYGCYVAEPNDVQLVRYFHLDERDLAFIYQRRGKHNRLGIALQLTTARFLGTFITDLTQVLPGVQHFVAVQLNIRRPEVLSRYAERDTTRREHTAQIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKILLPGATTLVRLVSEIRERANQRLWKKLAAIHYLTELNGTKKRLLDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDALRRRDIWLKNSDRWGDLREKLLQGEEWQAQRVLVCRALGHPTDGHKGVQQLAVQLDETWRAVASRFEGNTEVHICNDGKYPSLTISSLEKLEEPLSLLRLNNRVRQLLPPVDLTELLLEIDARTGFTREFTHVSESGARAQDLHISLCAVLMAEACNIGLEPLIKHNIPALTRHRLSWMKQNYLQAETLVSANARLVDFQSTLELARRWGGGEVASVDGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHGIVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTAGTSDIIFGLFWLLGYQFSPRLADAGEAVFWRVDKSANYGALDELARGCADLSKAENQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSGLAQAIMAVGRVNKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMQEALSWMRSNGEETRDEDIARLSPLMHGHINMLGHYTFTLSDDILNGELRALNFNLNNELSP 28256..28807 PHAGE_Salisa_1: hypothetical protein; YPTS_4241; phage(gi388570712) 3e-28 MRLFGYARVSTSQQSLDIQIKTLKDAGVKANRIFTDKASGSSADREGLDLLRMKVEEGDVILVKKLDRLGRDTVDMIQLIKEFDAQGVSIQFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGREEAKLKGVKFGRKRRINRKELLELHEQGMGATEIAKKMNIARSTIYKVINESQ 28826..29290 hypothetical protein; YPTS_4242 N/A MNLQNNLHSILEKVESLKNIKMLDKNNGEFTYIEGNYYFSDLTTDSLNIYEIKYLFTFENFDFFSNGKPNEVSVYKATNSFNSVCLGIKASLNSLDVERKELTVQFTYSMVFDASKGIPNFSNELETSMGLLRIAPKKLSNSFKDKGIEHNYVN 29429..29758 hypothetical protein; YPTS_4243 N/A MLTFFAKYYFDLFFNKEKNRKEKEITTRLEKRISKLEKENISLRDDLIKCKLEHIDEVMRIERSLNTQLKTNYKNNNNENLWAGIDDIIKTIECVSIESKIGGVKTNLK 29858..30124 PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; YPTS_4244; phage(gi17546157) 7e-35 MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKF 30202..30957 PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; YPTS_4245; phage(gi17546158) 4e-82 MMQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRREGWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLFNGRRVRALTIVDNFSRECLALEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDFSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPHSSLNNLTPAEFARSHQKGPDL complement(31105..31530) TIR chaperone family protein; YPTS_4246 N/A MRTYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPINEKELVAFMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEPTMKKEEDDHRPSSSHLLV 31563..31575 attR N/A AATTTTTTTATTT complement(31872..32303) PROPHAGE_Escher_CFT073: transposase/IS protein; YPTS_4247; phage(gi26248359) 3e-24 MHELEALLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERCENVILLGPPGVGKTHLAVALGVKAADAGHRVLFMPLYEDITNIGVY complement(32303..33475) PROPHAGE_Escher_CFT073: transposase; YPTS_4248; phage(gi26248360) 6e-34 MLSREDFYMIKQMRQQGAYIIDIATQVGCSERTVRRYLKYPEPPARKTRHKMVKLKPFMDYIDMRLAENVWNSEVILAEIKAMGYTGGRSMLRYYIQPKRKMRPSKRTVRFETQPGYQLQHDWGEVELEVAGQRCKVNFAVNTLGFSRRFHVFAAPKQDAEHTYESLVRAFRYFGGSVKTVLVDNQKAAVLKNNNGKVVFNSGFLLLAEHYDFLPRACRPRRARTKGKVERMVKYLKDNVFVRYRRFDSFTHVNQQLEQWMADVADKRELRQFRQTPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSWDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRSYSNEQQVASHRLCSASSGWQTVPEHHAPLWQQVSMVEHRPLSAYEELL 33516..33644 hypothetical protein; YPTS_4249 N/A MLGGADNTNGELPSYITGANTVKGFMLIISACTGFITSVAWA 33737..34027 PROPHAGE_Xantho_33913: IS1477 transposase; YPTS_4250; phage(gi77747809) 1e-18 MDALATGRRIKCLTCVDDYTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRPHSTLNYQTPSEFAAAWRKGNSDSEGSDITK complement(34090..34482) TIR chaperone family protein; YPTS_4251 N/A MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFS 34751..35335 virulence determinant YopE; YPTS_4252 N/A MSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM complement(35475..35774) plasmid stabilization system protein; YPTS_4253 N/A MYKLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELLAKNPELGAECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQDFPEHE complement(35767..36009) CopG/Arc/MetJ family addiction module antidote protein; YPTS_4254 N/A MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEAREQRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKGTSV complement(36153..36353) putative transposase remnant; YPTS_4255 N/A MTKHGISVEHSTLHSWVIRVVPLLHKAFCRYKCTVGRRWRMDEASKVSGNTCTGRLILAVILSIFC 36897..37346 PHAGE_Anguil_1: membrane protein ORF108; YPTS_4256; phage(gi387866124) 5e-08 MPVLVIGTTVHLGYPMPTLVIGTTVPPGYPMPTLVIGTTVPPGYPMPTLVIGTTVPPGYPMPTLVIGTTVPLGYPMSTLVIGTTVPPGYPMSTLVIGTTVPLGYPMPTLVIGTTVPPGYPMPTLVIGTTVPPGYPMLTLVIGATVQLRK complement(37450..38415) PHAGE_Entero_N15: ParB; YPTS_4257; phage(gi9630491) 3e-79 MMKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTIVLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSFLTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQMLWLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRCIKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTHKIMKQKQEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSVPESLVKQIEELLNTYAKEHSL complement(38412..39578) PHAGE_Entero_N15: plasmid partition protein SopA; YPTS_4258; phage(gi9630492) 2e-160 MDLKSTLDRCIERGQFMTQEIAKSQFGNDSPAARTITRRWRITEAAELVGVTPQTIRNYEDSGKLPPPDTAMIGRVEQRTGYSIQQINDMRDVFKTRLSKPKGENPVVLAIAAHKGGAYKTSTSVHIAQWMALQGLRVLLIDATDPQATASLYHGYVPDLHIHEEDTLLPYYLGQRDDAAYAIKPTCWPNLEVIPSCLAVHRIESEIYGLHDQGKLPVAPHLLLRAAIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFFTMLRDLMSNIDLNGFEPDVRVLITKFSNAIGSQSQWMDDQIRNAWGGMVLKEVVRVTDEVGKGQVRMRTVFEQAANQRSTPAAWRNAVSIWEPVCAEIFNRLVKPRWENA 39662..39673 attL N/A AAATAGAATATC 40175..40324 phage integrase family site specific recombinase; YPTS_4259 N/A MAEGTAYEVEPDSVLLLWGLFDNELHVEFEGEWTGPYYPISGPTLLNVV complement(40377..40571) PHAGE_Entero_Sf6: putative transposase OrfB; YPTS_4260; phage(gi41057343) 4e-13 MQSMSRRGNCLDNSPMERVFRSLKSEWLPVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITAL complement(40683..41141) PHAGE_Entero_Sf6: putative transposase OrfB; YPTS_4261; phage(gi41057343) 6e-27 MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSRRIVGSAISSSPDAELVCRA complement(41168..41485) PROPHAGE_Xantho_33913: ISxac3 transposase; YPTS_4262; phage(gi21231087) 4e-07 MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGVTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR 43457..43468 attR N/A AAATAGAATATC 46928..46939 attR N/A CCTTCCCGCACT 51748..51761 attR N/A TTACACAGAATTAT