gi|170780462|ref|NC_010407.1|  Clavibacter michiganensis subsp. sepedonicus chromosome, complete [asmbl_id: NC_010407].3258645, gc%: 72.56%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(254527..255489)         PROPHAGE_Brucel_1330: ISBm3, transposase, programmed frameshift; CMS_0219; phage(gi52430457)     2e-46               MSHGNARLTVHGRVLLVRRVVEDRRPVAHVARELGVSRQCAHRWVNRFRAEGLRGLTDRSSRPRSVPRRTSPERERAVLEARAQLRAGPARLAPVTGVPSRTISRILRRHGAPPLAWLDPVTGAVIRASRSTAHRYEHEHPGDLIHVDVKKLGRIPDGGGWRVHGRSEQVRGRGIGFDYVHAAVDDHTRLAYAEIHPDEKGATAAGFLARAAAYFAGHGITRIERVITDNAFAYRHSTAFKNAVQDLGARQKFIRPHCPWQNGKVERFNRTLATEWAYRQPFTSNQHRADALDPFIEHYNTERIHSSHGLTPAARVSPTS
complement(255587..256060)         hypothetical protein; CMS_0220                                                       N/A                 MRAACSHARRSYDRHMTTTPEPDLPPVEFAFPGPLRDQLVAAIASGEKTSTSSLLIQYDADDEELPVVGSRGSVIDSDGRPVLVVETTYVEVARLADVPLAHAVDEGEGFTTVAEWRAGHEGFWGSAEVLAELPDGFALDDDTEIVLERFRVVDGRA
256080..257060                     PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; CMS_0221; phage(gi116326757)     2e-62               MLPGRALPLGPGWRRPHSTRKAHPMSEIRNGGNQYEIQDPIAQYPSPPFPQQEQTGPGDEMKFEPTPDHGQDSYVGFGRLAGRKVLITGADSGIGKAVAIAFAREGADIALNFLDEELEDARDTASTIEQDGRTAALVPGDISDETTCGDIVQASVDALGGLDCLVMVAGYQRNEDDILDLDSEQLDRTMKTNVYSLFWLSKAVIPHLPKGGSIITTSSSQAYQPSADKIDYAVSKGAIRNFTQGLAQQLAPKGVRVNSVAPGPFWTVLQPVGQSASDVEEFGSQSVYGRPGQPAEIAATYVFLASQESSFTSGETIAVTGGTPVH
complement(257100..257672)         hypothetical protein; CMS_0222                                                       N/A                 MADLPFEHRVEVAFLVASPVHRLEGRPSDGPRDEPGEPPSRPSVRVRAGLGIVGDRYFGQRAHRTAAVTVMAVEQVERVARELGVDAGLDPVDTRRNVLLRGADVDRLRGMRFSIDSGHGPVEFQGHRPANPCAWMDVMLAPGAFRALRGHGGVRCELLGDGILTVGPAVLRTERPLDDGDGDDAGARLF
257781..259481                     PHAGE_Feldma_virus: putative hybrid sensor histdine kinase; CMS_0223; phage(gi197322490)     4e-19               MGELAPSDVPRGQRSRAQAVFRSMTFSKPLHAQLPFILSLAVVGVVAGTGDLASVADPVFVAGAVIAAIVTIVAAAVPWDRIDSDWVAVLPMLDFVALALCRDAIADQVPSTTFLLVFPVIWLAYAFPLHVLWLGAIGTASVLALPYVRAGTLPDGTTGWSHLVVLPLVMLLVAVAVNLLAQQLIRQHARLEEMQLELTGTLVDLQERNSIIDGVLDAIDDTVTVLDAEGRVMLRNRAAHDLMALADPLDPDDPMLGRLVYEEDRTTVVPPERQPVARARAGEVVGREVYWVGDGGAQKAVLASISPLVDGAGRTFGTVVVSTDVTALALAVTEREEFVASVSHELKTPLTSILGYVELIADDLEEDDLDDRITAARLAIVERNAQRLLGLIGDLLTAAQHRLAVNRNLVDVGEIVENALDVIRPHAQASGVTLVEPEYEELVAEVDAVRIGQVLDNLLSNAVKYTPEGGTVTTAVGVEGEHLSLCVTDDGVGMSAEDTAQLFTRFFRTNSARASTVAGVGLGLSITRSIVEAHDGSIEVESTLGTGTTMRVRLPLRVARAAPRPT
259631..260398                     PHAGE_Macaci_1: ubiquitin E3 ligase ICP0; CMS_0224; phage(gi110007339)               2e-07               MPYRVDGCAAGTRRRPPRSFGSSRRRPGVSAHAARVPQLPPLLDVRVLEQLLAELSDVPGPVRLSVVPATDAPAPPPGVPAPGGVTPPRGHPEPRRGTPSSGSPRPDDRLATPGAPAPGCGQAPAGSPRPVGAPTSAPAASEPTCPGALTDGQHACIDFLRFFVDLWPSRWERLDAAVRAGDRAAALDACLSVKSSAAMVGALLLSDAAGQLERAIRAADHGRATAMLPELGEAGVRSMDAMRSWVRAEAGHPPD
complement(260591..261394)         putative two component response regulator; CMS_0225                                  N/A                 MVLRQGGFEVHAAGTATEGVRLAEEVSPDVITLDVGLPDFDGFEAARRIRLVSDAYIVMLTAQGEEVDTLLGLEAGADDYIVKPFRPRELRARISAMMRRPRGGGGDTTTTPAAGIPAAPDVPEAAVDADEPVQPVQPAAVATTTVVPPAPTTEATPDDEVLRHNGLELDEGTRHVTVDGEPVDLTRTEFDLLASILASGGRVRTKGDLVRDIRSGSYAVASSTEPEERAVEVHLGNLRRKLHDDPREARWIQTVRGVGYRLAPPRG
complement(261591..261959)         PHAGE_Lactob_KC5a: putative minor tail protein; CMS_0226; phage(gi90592623)          9e-05               MPRWILRIDRRILVTTLVSMLVAAVVGGSIAALGLGLIFVTDSCDVDAYVCRDSLFTIGYGIAVAGPLMLTGIAVIVALVGMIRGRTRPWLVLLIGVGASLAAYILGAVLVLVSVPGSSPIT
complement(262217..263053)         PHAGE_Cafete_BV_PW1: putative apurinic-apyrimidinic endonuclease 1; CMS_0227; phage(gi310831095)     2e-05               MRVATWNVNSIRTRVGRVVDWLVREDVDVLAMQEIKCKPEQFPMAAFEEADYEVAVHGLSQWNGVAIASRLPLEDVVTTFEGMPRFGKPDATGQPPLEARAMGATVAGVRLWSLYVPNGRALDDPHYSYKLEWLQALAADTRAWLAADPATPLALMGDWNVAPLDTDVWDPALFEGKTHTSEPERAAFAAFLDAGLADVVRPSIPEGYTYWDYQQLRFPRNEGMRIDFILGNDRFSELVGAPRIHRDERKGDGPSDHVPVAVDLDVETELDDDRPMIF