gi|148825133|ref|NC_009566.1|  Haemophilus influenzae PittEE chromosome, complete genome. [asmbl_id: NC_009566].1813033, gc%: 38.04%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
958225..958238                     attL                                                                                 N/A                 TTTCACCGCACTTT
958659..958841                     PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p49; CGSHiEE_04590; phage(gi109289984)     7e-05               MAMTRAEINAKSDKKRGVRLQSYKLHEDIIKLLAELSEKTGKSKTAIVTEGILAMEKNYK
complement(958885..959334)         PHAGE_Haemop_HP2: hypothetical protein HP2p14; CGSHiEE_04595; phage(gi17981828)      2e-14               MIFTVGVETPENENQAYGMIVPALCQLDYGCFSGADDVDDLLPMVTEAITMMLEAMVEDGFDLTTLKDKGVTHYKADPEYADFDTWLLVDVDISEYLGKKQRINVSLPEYLLTRIDRRVAAMGNYYKDRSHFLANAAHRELHAHSDKEM
complement(959366..959548)         hypothetical protein; CGSHiEE_04600                                                  N/A                 MHSGDLIKELKANGCYFVRHGKGDHQIWFSPKTGKRFPVPHPKQDLAIGTLKSIKKSAGL
complement(959705..960316)         PHAGE_Aggreg_S1249: uncharacterized phage-encoded protein; CGSHiEE_04605; phage(gi273809589)     1e-45               MNQLLTMTKENASILTMSNREIAEITHKEHKNVLRVIRDLIEQNLVAQIEPLKFEYRNQWFDYYELNKRDTFVVDRWQALENRQKPTALIPQSFSEALMLAAQLQAEKERNAPKVAFVDHYVEVGTSKSFRETAKILKIPERALVNRLVEDKYLYRQSGVLLPYQSAHTKDLFTVKTGTAEHGHNYTQTRITSKGIELSVLRA
complement(960364..960660)         PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p14; CGSHiEE_04610; phage(gi31544012)     1e-33               MARNKLTRSARVLSDQVIDKYYKQKQYEVAEGMETTPSTLSRFISNEEFTQTFNFIAACQFGVFDTDTHIAVEKSEFEMLLLASQGFDKRLREKYLGE
complement(960681..960887)         PHAGE_Entero_mEp213: prophage anti-repressor; CGSHiEE_04615; phage(gi428782642)      2e-14               MNNLSQIRGQLGITQRQLANHIGWSQPRIANYETGLRSPSLSVAQKIVQTLNSLGAKVCIEDVFPPQS
961018..961674                     PHAGE_Entero_mEpX1: prophage repressor; CGSHiEE_04620; phage(gi428781915)            3e-26               MATLGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGNRTPDLEDISIISKALNILPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMIPSTAIASENSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDNEATFKQYRELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIGVARERVETL
961742..962671                     hypothetical protein; CGSHiEE_04625                                                  N/A                 MNKQVKLRAFSISQDKFSGTVTVSDLLKEVLANSKSSNERRMRLSEDDPKKEEDLISHFNIEKENFIFATMLRIAPGDNVQHIDEALFNKANFSISDLLNAKLNTSAIYKDHYYFALSNNFLVTNLYSRTTITRLQTYLNWLLKELIDLSPVIEIKEEYDLASIKSFVIQDPQIKNKSHIDETQSDNSTILSRLKDLAFDQVKALFKDATDLQDVDLSQIVSAKLLIQLKNPTKKSPEEVKKAFSAVLKPVSDLDNISFKTRRGASVTGSQLEKSKMVEVDTTETGKLNEQTLLQQMEIFIKDLENEQK
962652..963209                     hypothetical protein; CGSHiEE_04630                                                  N/A                 MKTNKNKMAMLTIGILLTISISSLFFPEYNDEKMGNLVNTIYTISGIMFSIGMGVICTFNPSGIKNENIYSIIENNIFKVRSSFLFYFALSTILFIAQTIFDLSYRIAIGFDFIDITIILDVKTFTLVMSIIAIIYYIINFQAIQKLNLDIAKRIIQEEKLTKTNALTLLASMSPTFMSKTYQPQ
complement(963630..963800)         hypothetical protein; CGSHiEE_04635                                                  N/A                 MYFQIFQGVNNQWYWRLKAANHETIAVSEGYTTKQNCLHCIGLVMDTDRKTPIYES
963815..964036                     hypothetical protein; CGSHiEE_04640                                                  N/A                 MQEEMKRYAISYHFDGKRWATDVYAHSFEEAEEKLKAMSQGTVDGEIHLSVYIPENPLSKVSRLITRIAKKFM
964204..964419                     hypothetical protein; CGSHiEE_04645                                                  N/A                 MQLPKVELKQANIPMWIFQNTFASTETQRHVKPLRMIDEVCFEMANIKQTRLKMEEKRLFRGWQCYQQHHN
964451..964603                     hypothetical protein; CGSHiEE_04650                                                  N/A                 MKAIENGAYHPGLEERACQAISYINRFSDAQTKEELIDNKTGEVYVLVRP
complement(964589..964855)         PHAGE_Entero_phiFL3A: hypothetical protein; CGSHiEE_04655; phage(gi281416218)        1e-06               MANLILTYDLRNQRDYKSLIEAIKSYGTYAKLFESVWYIRSRTHTAEQCRDYLLQFIDNDDRLGVFDCSNNDFATMRALNKVSNLWSN
965117..965608                     hypothetical protein; CGSHiEE_04660                                                  N/A                 MTELFIESEYHSIPHQFAEFRVANVDYIIDFSSDNDVIESLFSLDERLVPLLKNRKTYSVKFGVKEYYESTEPSIDLYAPPINHQLKKTDIQHLKEQLETLLYKHYSIYQPECYFFIAERPSLSRMYQKMCDNRHPLMIDFQPIGQLGENSDCFIIKTPNYKE
965612..965704                     hypothetical protein; CGSHiEE_04665                                                  N/A                 MAEAKPSAKELKRQAMLASRLAYQKAKNQS
966042..966293                     PHAGE_Escher_TL_2011c: putative antirepressor; CGSHiEE_04670; phage(gi418487055)     9e-19               MTHLNLIPVFNGLIQNQPVRLCNARELHAFVESKQQYTDWIKNRINEYGFIQDEDYLVITERTNGRPRKEYHITLDMGKELRN
966646..966864                     hypothetical protein; CGSHiEE_04675                                                  N/A                 MRQEYLTEKSQNLITLEDIAIYFGRHYQTVAKIISKLPNFLKPVTVDQQNSRPRYIAGEVVRWGRINAKRIS
complement(966861..967259)         PHAGE_Mannhe_phiMHaA1: integrase; CGSHiEE_04680; phage(gi109289985)                  6e-36               MRAGEICSLSWDSVNFEKRTAFLPMTKNGTSRTVPLTKNAIAILERLKSEIGDEGLCFDIKSNVLDATFRKLKKLAEREYLHFHDTRREALTRLSKKVDVMTLAKISGHKDISILQNVYYAPDMAEVAELLD
complement(967256..967417)         integrase/recombinase; CGSHiEE_04685                                                 N/A                 MVGIQLPEKGKPRTQRVTEENINAIVAISGYVDTLKTAKARTAAAMLFAVETQ
complement(967427..967720)         PHAGE_Mannhe_phiMHaA1: integrase; CGSHiEE_04690; phage(gi109289985)                  3e-10               MELQSQGLQPDTLFSDVIKRYLNEITPTKRGEKHEFNRLNRFLRHPVTDKYISDVSRRDIEDWIAERLESVKSESVRRELSTIGHIFKIALERWGYI
971182..971195                     attR                                                                                 N/A                 TTTCACCGCACTTT

#### region 2 ####
1071576..1071588                   attL                                                                                 N/A                 CATGTTCATCATA
complement(1081184..1082236)       PHAGE_Megavi_lba: putative Sel1-like repeat-containing protein; CGSHiEE_05390; phage(gi448826087)     2e-07               MKKKLTLAVLLLAVIGGGAVYFTQYYPEYREIKQLERLVSAQEYYGDQQARKALEDFSPARLRVLAEKGNAVTQYQLGRYYFIKGQKNLATEWFLKASNQNYPLAYRGLATIYNDKGNKESSKHYMKMAADAGDNFAKMILAIDAVNKDKDFLTGYMLVEQAANNGYPMAEAQLGRWYFDGNDNIKPDWEKAFYWLDKAYKSSLLHHQPAVFRQVENNRFRPNSVYRELAILYILGIGTVKDENKAEQLLQEHNKETKDEMTVIGTKVKLIKLKKLKDEAPNDDVKAKFETLQLELENSQDPAVFVELGNAFLYKDEQKAKSYYGMACDLRSQEGCDKYRELNQKQDTNK
complement(1082236..1083000)       PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; CGSHiEE_05395; phage(gi363540752)     3e-19               MKLTKTLLTTALFGASIFSFQSTVYAMEEEQVDKIVHLFEQKDFKSALAIIRPLAEQGDGIAQGMLAVLYKNGDGIKQDYFEAIKWYKKSAEQGVRIAQYDLAGMYINGLGVKQNYQEGFKWLKEAAEQDDVDAQFKVGMMYKDGVGVKQNNTEAVKWLKKAANQNDTESQMILGDMYYDGDGVKENKTEAIKWYQKAAENNNSRAQAIVGLAYMGGIEVKQNFATAKKWFGKACDNKEQKGCEMYKQLNQGTK
complement(1083013..1084224)       hypothetical protein; CGSHiEE_05400                                                  N/A                 MPTLQCEFWNVGQGLFSSGRIQMGDAPAFHWVYDCGTNSSQKLIQNAVQKYNQQENNANIDLLVLSHFDKDHISGVKELLKNKRKIKRWVVPYYPLWQRLVIASLLDIQPDDEEWAFYQNPIQYLKADFAEELKETQFLLLPAKENESEILITLEPSNFDDVLSFKTTEKLSNEFDNLKQNVHWLNPDKALLFRKGEEQFEFVLYNVPFHLLAKVPTNLTAFQKQVEQIIQSHQSNSTDPTPALKTLYTLAFGNGNKNKNIISQYLYIRNITSTAVWGLGNNYIYDIPKNDGNEILVFPKDRNKNAILYTGDAFLNDLPLLTDLTQSLGVERMARIYCLQVPHHGSKHNWQQGLANIFSPCLSVFSADSQRRNGHPHSEVLKDFSTYTPILVNKNKRLFIHSI
complement(1084224..1085378)       PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; CGSHiEE_05405; phage(gi363540607)     1e-29               MLLFILSIAWADTLEQQFQQGLEATKRGDYQTAFKLWLPLAEQGNASIQFNLGLMYKKGQGIKQDDFEAVKWFRKAAEQGVADAQLNWGNMYAKGLGVKQDDVEAVKWYRQAAEQGNAKAQFNLGLMYDNGRGVKQDYFEAVKWFRKAAEQGYADAQFNLGNMYYNGHGVKQDDFEAVKWYRKAAEQGYADAQFNLGNMYYNGHGVKQDDFEAVKWYRKAAEQGYADAQFNLGNMYYNGHGVKQDDFEAVKWYRKAAEQGHAKAQYNLGNMYANGRGVKQDYFEAVKWYRKAAEQGYADAQANLGSAYSAGHGVRQDYIEAVKWFKKAAENGSADGQFKLGLVYLIGQGIQKDRTLAKEWLGKACDNGNQNGCEYYGELNRGER
complement(1085531..1086067)       hypothetical protein; CGSHiEE_05410                                                  N/A                 MEHKLEDIIAIFNQCFEEEYNTRLVKGGDEPIYLPANDEVPYNAIYFARGFYSSALHEIAHWLVAGKERRKLEDFGYWYEPDGRSEERQRDFEKVEVKPQALEWILATAAGFRYFASADNLNGNPGDTQPFKQAVYEQVKTYAEKGLPKRAETLCHALAIFYGTEDRIDLSKFDVARI
complement(1086458..1086592)       PHAGE_Haemop_SuMu: Mu-like prophage protein gpG; CGSHiEE_05415; phage(gi418489082)     9e-05               MIDIEINNAQEVTALLERLAQATAHRAPLMRSIAGSMESAVAQL
complement(1086811..1087002)       PHAGE_Haemop_SuMu: hypothetical protein; CGSHiEE_05420; phage(gi418489083)           2e-07               MDKLLGQDWQECYPNTLSQNEKACLKQALLHRFTYSQGESFGLQSYLRDLRIINDYPETSEVN
complement(1087153..1087821)       PHAGE_Haemop_SuMu: MuF; CGSHiEE_05425; phage(gi418489084)                            4e-66               MEVERPADKQGNREKTVGFKLPDGTIRVTDKGFDYNVGRLNYKPNLDLYPEKLAHAFAKVEMKGGEFKHDFELLAKHVAEMKQTLSPDGKKLTAEQMLQVRDSLTKNFKFAAGVLSAESKDFLKSKTGTVWLSDDTLIKQFNSRDGQDFGLESYALFPDLFNQPDIVLQDNDRFYFIKNFEKQRILGVIKHLSKFNEIFVLSAREINIKEVEKMKGKLAVIK
complement(1087880..1088113)       PHAGE_Haemop_SuMu: portal protein gp29; CGSHiEE_05430; phage(gi418489080)            6e-23               MRHLAQTITQQIILPYLQINVDPNIAPHRIPYFEFDTKEYEDLSVFADAIPKLTGIGVQISESWVRDKLGIPEPQEG
1088113..1088643                   PHAGE_Haemop_HP2: rep; CGSHiEE_05435; phage(gi17981825)                              9e-25               MTKRGDQPICIEYEECEPNKYGEIRKKIVGVKNRFTEKKIITKLKNWVIKSAKSALGSTALNSESTETNKAHRAAWTCVNNCNRSKIEQQANLLMLPIGSPLKPSQIDLLMSHGRLPLNDYRWICCENDEVFIKEEKIPLAQAFGWGESLGDFRVNFMFIISTSSWCWRFWFLKIF
1088583..1088595                   attR                                                                                 N/A                 CATGTTCATCATA
complement(1088751..1089041)       PHAGE_Mannhe_phiMHaA1: integrase; CGSHiEE_05440; phage(gi109289985)                  2e-21               MASVGAHKFGVSKSATFLTQADAKKWAEMLEKQLESGKYNEIPDITLDELIDKYLKEVTVTKCGKREERIRLLRLSQTPLAAISLQEIGKAHFREW