gi|119866057|ref|NC_008705.1| Mycobacterium sp. KMS chromosome, complete genome. [asmbl_id: NC_008705].5737227, gc%: 68.44% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 3074173..3074187 attL N/A GCCCACCACGGCGAC 3083915..3085054 PHAGE_Ectoca_1: EsV-1-65; Mkms_2950; phage(gi13242537) 3e-14 MTAGIGARLFAAQAIVLTVGAATTSMAAAIVGPPLFRDHLHQAGVPPNSLEEMHAEEAYGYATAISITGALAVSVLAALAVSWYLSRRLQRSITEVASAATAVADGRYDIRVSPPHLGEDFDALAHAFNQMASQLQSVEVTRRRLFSDLAHEIRTPLAVLEAYFEAIEDGVRSLTPETAAMLRDQTGRLVRFAGDLGALARAEESSASMELEPIDIHSLVQRCAAAAQSGYSRKGVELCTAVDVDLPPLWGDEQRMSQVLANLLDNALRHTPSGGRVEISARRDGHRVLIRVSDNGEGIAAEHLPHVFERFYRADSARARQNGGAGIGLAIAKAVVEAHGGTIAADSAGAGRGTVFTVTVPVRASAPDLARRPPPTPVA complement(3085303..3086547) PHAGE_Plankt_PaV_LD: protein kinase; Mkms_2951; phage(gi371496162) 8e-18 MVAPPAVTANERGNAVDSTGHDLFAGRYVLRGLLGAGGMAEVRDAWDTRLDRPVAIKILHPAMNAQPETLNRFRDEARSAAMLSHPNIVAVHDYGEQDGTPFIVMERLPGRTLHDVMADGSMAPDQVRSMLDDVLAALSVAHSAGVLHRDIKPANILLSVTGDSVKVADFGIAKAGGAAHTMTGQIIGTMAYMSPERVTGAPASVADDLYAVGVVGYEAIVGHRAFPQDTPVAVARAIMDDPPPPLREVRPDLDPVLAGTIDRAMTRDPAHRFGDAAQMRAAVNGDRQALLAGAAPATATPPRPATKVLDQPLPPSAHYVLPPPPPSRWRQLPGRTRKAIFAAAILVCLTVSALALAAEPFSTAPSPQPSSTSTPAPAPTSTPSSAIEQPQDGSGDKEQKKEEKKREGRGNGNG complement(3086613..3087071) PHAGE_Rhodoc_REQ1: lysin; Mkms_2952; phage(gi372450095) 2e-23 MVKGLGVALTAVALSTTSIAVATPKANASTVNWDAIAQCESSGNWAINTGNGFYGGLQFLPATWREHGGVGSPDKAPREYQIAIAERVLRTQGIGAWPVCGAYALSPRSSAPPGTGSACRVMSGLVLGVVNLNRMCAALTSQARAVASALAR complement(3087501..3087821) hypothetical protein; Mkms_2953 N/A MAVEADQVAAFLGRPEDAAILATAEQAIPIVTTMVKAYIRGNGFDWEPNDELEAVIVTASARMVSNPGGLPVDTAAGPFTQSLRGAFQGWTLAELFVLNRYRRRAV complement(3087821..3088666) PHAGE_Synech_S_CBS3: major capsid protein; Mkms_2954; phage(gi331028011) 1e-12 MATETTAANPELLQEQVANILVQPLEAASVVLSSGVRIFDTSGPLRIPKLTAGASVGFVAEGGLIPEADVDFGEISLMPSTLKSLKVLIRFTNELLRQSVIGLDATLRQRLVTDVSNALDDALLTGAGTSNTITGLINQTGVQTGTLDVADADSLLDAIALASAAEVTPNRWFLNGADFIALRKLKETTGSAKYLIESDVTAGPTYRLFGIPVTVTNKLAEGKAVLADTTQIAVARDLAPSVKLLDQRYAEYDEQAIRVVTRYDLGLLHPEAVVVLTAAAP complement(3088913..3089368) hypothetical protein; Mkms_2955 N/A MMNDANSTDEPIDETAEGTQEPSTPELSDSESGNPEGSDSESDPDTFPRDYVEKLREENKRYRHRAQRADTYAQRLHTELVRATGRLADPTDLAFDEAHVEDADALAAAVDALLARKPHLAARRPAGDIGQGASPSADTVNLAALLRQRAQ complement(3089365..3089955) hypothetical protein; Mkms_2956 N/A MTAAVDLYQLDTGRLSEGTERAVLGVYAQWVTGELDYDTAAVVIAGIINRANAAATAVADSWLAVQIEQQARLPVPTVGIVPADDSDRLLRAATTVLDDRETGEMRLARLGRAEPLEAAHQATTEAIRHQPLVEGWTRAMDGDPCQLCRWWWRQGRTWPKAHPFQRHKGCNCQPRIVVAENIQSTGYTRQLERNRA complement(3089952..3091271) PHAGE_Rhodoc_RER2: portal protein; Mkms_2957; phage(gi372449906) 7e-42 MNDLLQKLLQKLDEPIARYSDLERYYTGTQPLAFLSPEAKEALGTRFGRMASNLPRLAVTSLTERLRVTGFTGADVWDDWLRNDMDQESATAHREALLLGSSYVIVWADRFGRPLVTVESAKQMACVRDPGTRRITAAVKRWETDTTTEAVLYGPEEIVRYRANQTGATVDGFKAVESIANPLGVVPVVRLLNSDRILDEGVSEIEDLKPLCDGLAKVLTDMMVSSEYVGRPRRTATGIELVEEPVLDANGNPTGETVAVNPFPEGNRMMVSENHEAKFGQLDAADLGGYEAAVRVLLGQVMAVSALPAHYVGQLSDTPASADALRAAEASLTARAEARQQQFGRSWEDVARLVVAVRDGVDPLGVDVRVKWADASTRSVAAEADAVTKLFAAGLLPASYALQRLGYSDDEILEIRAARRAETLDGQGVNLAALPREVA complement(3091268..3092737) PHAGE_Strept_phiC31: gp33; Mkms_2958; phage(gi9631142) 2e-57 MRAGPKASVDPSPLPWRPQSTGSARFAKFCEKFIRVPKGTGARTPLRLREWQQELAGSVLDADPRPRTAGWMLPRGQGKSTLLAAYGLYDFFTGDEGAVVCVVAVDERQAGIIFGIARRMVELSDELASRCQVFKERLYIPERDAHFHCLPAEPKRLEGLDYTTALLDEAGVASRDSYEVLTLAQGKRAQSTLIAIGTPGPDPNNQVLADLRNYAADHPEDASLVWREFSAAGFEDHPVDCTHCWELANPALDDFLHRDALYALLPPKTREATFRRARLCQFASDTDGAFLPQGVWDGLSTGRPIPDGTEVVVALDGSFSDDTTALLAGTVSAEPHFDTIHVWQRTNGDDSYRVPVAEVEDEIRAACRRWRVAEIIADPFRWTRTLQALEAEKLPVVEFPHSPARLTAATGDLYSAAVNGKLTHSGDRRLAEHVAAAVITEDARGIRLAKASRSRAARKIDLAACLVMAHSRATWRATHKKRKRAVSFR complement(3092737..3093111) PHAGE_Strept_SV1: putative HNH endonuclease; Mkms_2959; phage(gi410491762) 7e-16 MCVNCAWTGCNRPIHSRGYCGSHYNKARASGLLPSRPFWVEDTNTGCWLWNRKRRKDGYGRKSIDHSREIPAHRWVYEQHVGPIPDGLEIDHLCNNPPCVNPGHLEPVTHVENMLRQWRRRRAA complement(3093491..3093736) hypothetical protein; Mkms_2960 N/A MNINAGDFRRAAALITQHTSRDDTGCNAVLQEAAEAGRITELIVGILDVYETLTPILHSPLGIAALRNIIADLARREENEK complement(3093733..3094077) hypothetical protein; Mkms_2961 N/A MDKRRSRSRLCKHCRAARTGHSTRLCVLCRPSAPIAERILAAYQLKDTMNIRILRVIGRRSHSPAVVALADDHLVKWSPRDDWTCSCDEATFPDCPHIPAIEEVLDPRVTGEPR complement(3094249..3095349) PHAGE_Synech_S_CBS3: putative hexameric replicative helicase RepA; Mkms_2962; phage(gi331028052) 3e-09 MTDVTDAETVSLLEGMVNGEWLDAQVFPPLEWAVEGIVPEGFGLLVAPPKAGKSWMVAGIGLACAIGGYAFGKIPVKQRPVLYLALEDGHRRLQDRFRTITEGDPIPAGINVMVTARTYEIPGIIAEYLALHHGKQPLIILDTLGKVKPPKRPGEESYSADYAIGGRLKELIDSEPGATLLCVHHTRKAESADFVDAVSGTQGIAGSADFVLVLTRKRQDDKAVLAVTGRDVPENEYALTTAAGRWVLDGMDLMDAAAAVAKRKDSENLGDRSIDALMFVNSRPLGTRQADLATHLGIDNDTAGRYLRRLHDAGRIGKRTRGIYTPLSEVSEVSVLDVPARQPDQEEHPQTDTTDTTDTPFDGCES complement(3095346..3095621) hypothetical protein; Mkms_2963 N/A MTEPIELIRNIHGEPMLTSDALALLFGVTPEDIVAHSTDPSTDFPNAWIRAGRRRSREAQAATGKDDILAVLAYWARKDRDMVITVEDGDQ complement(3095618..3095986) hypothetical protein; Mkms_2964 N/A MRLENEVGPDVTTAEANRKPEPHHAAGTADYIAGLRRRRAATYRLPVLACGCADPWTCRHHTKHGSVTDQFVDGYRDAAEHLLASGLTPPPNLPAMRAMWKRGGHDQRLAVRIAELWQVAAA complement(3095983..3096252) PHAGE_Mycoba_Giles: gp30; Mkms_2965; phage(gi430768357) 7e-10 MQLALHSVNSSPAPRRARLDRSEQMAELVNRLVSIQEAREKWLGGIGRTTLYELIKRGELTQVHVGRRAFITAESLAGYMNRLQEAATA 3096285..3096905 hypothetical protein; Mkms_2966 N/A MPGDSLPDGDTHHRGAYYADPNDENAPFCYYRVSKAFAVIDGRRMPLWLEVEQSDVVSTPAWGSRVELVKGVPRIVSLGFETRHGFALGREVKTSDFQVIRPVIYDFYAVFCAEIGTDGEPIYRRNDDAANRRIADFLEQRRTGRQRLKTPDYQRAAQIYRENFDGTPTQAVGEAFGVRLRQAGNIVAECRRRGFLPPTKQGRKKA 3096902..3098041 PROPHAGE_Mesorh_MAFF303099: bacteriophage integrase; Mkms_2967; phage(gi13470699) 3e-34 MRKRANGEGNIRQRANGRWEGRVSYVDPVTDGRKSVSVYAATAAECRKELKKVRDRIEGGAPAKDAPNTVSSWLKQWRASSLAASDRKETTKSLYATLSRKHLEGARIGDKRLDRLKPSDVELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAANPASKVKRPGVARKEAKYLPAADVARLLDAAKGLRYYLGVVLMATTGLRRGEVAGLLWSDVDLEKGELTVRHTLSRVDGKLVLTEPKTDRSRRRVPLHAGVVAQLKMHRTQQLQERLAAGDQWRDTGAVLATEFGTLLDPRNLLRTVEIAAAKVGIEDVGAHTMRHSAAVAWLESGVHIKAAADLLGHSSIAITGDLYGHTSDETARAAVDGLGTALGL complement(3098119..3098192) tRNA N/A CGGGCTGTGGCGCAGCTTGGTAGCGCACTTGACTGGGGGTCAAGTGGTCGCAGGTTCAAATCCTGTCAGCCCGA 3098269..3099846 PHAGE_Cafete_BV_PW1: putative photolyase; Mkms_2968; phage(gi310831138) 5e-37 MRIRTRHAEDSVWRRTLEPTQRPPRSLEEVTGTRDDTPLWLFADQLGPAVHGGEHAHRDVLLIEADHALRKRRYHRQKLHIVLSALRHADRDLGDRATLLRSETYTDALERYGRPVLVHEPTSFAAERFVHRLKQRGLVADILPTPTFALPRKDFEQWAGNRTRFRMEDFYRDQRRRFDVLMSGADPVGNRWNYDEENRHSPPKKRRTLDVPAPYKPREDDIDEEVRRDLDRMDLDTVGADGPRLFAVTPAEAKRALTRFIEHRLPTFGDYEDAMMGEDWAMSHSLLSVPLNLGVLHPLDAVYAAEQAYRDGTAPLAAVEGFIRQILGWREYMWHLYWHFGERYVDSNELDARTPLPDWWADLDADAVTAECLRHALMGLRDRGWTHHIQRLMILGSHALQRGYHPRELTEWYATAYVDGFRWVMPTNVVGMSQHADGGMLATKPYTSGGAYINKMSDHCGDCAYDPRKRLGEDACPFTAGYWAFVHRHRDRLERNMRTRRAVQGLNRLGDLEDVLAQEDKRTRF 3108448..3108462 attR N/A GCCCACCACGGCGAC #### region 2 #### 4085194..4085958 PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; Mkms_3870; phage(gi116326757) 8e-06 MQIAGSSAIVVGGAGGLGEATVRRLQGAGAKVVVADLADEKGAALEKELGVRYVRTDATSEESVNAAIAEAESMGPLRISVDTHGGPASGGRLIGKDGSPLDLDGFKKTIEFYLTAVFNVMRLTAAAIAKSEPLEEGGRGVIVNTASIAGYEGQIGQLPYSAAKGGVLGMTLVAARDLSPLGIRVCTIAPGTINTPAYGKAADQLEQYWGPQVPFPKRMGRSTEYAQLAQSIIENDYLNGEIIRLDGALRFPPK 4085955..4086695 PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; Mkms_3871; phage(gi116326757) 5e-10 MSLAGKVAFVAGASRGIGATVAKALAAEGAAVAVAARSEQPGKLPGTIHTVAESITASGGRALPVSCDVTDESSVETAVAETVSEFGGIDILVANAGVLWLGPIESTPLKRWQLCLNVNLTGVFLVTKAVIPHVRARGGGSLIAVTTTGVTMTDQGSNAYWVSKAAAERLYLGLAADLRADNIAVNCLSPSRVVLTEGWQAGGAGMEIPPEMVEPPEAMGRAAVLLAAQDASGITGTIQRSEEVVR complement(4086692..4086955) hypothetical protein; Mkms_3872 N/A MPFYWTEAHHTDDYSRGGRTDIDDLTLACQPANLLIEKTGWTTQRPGNGRTQWTPPEDHDTGQPRINNHFHPHRYLTDKSEGDDESD 4086921..4086932 attL N/A TCGGTGTGGTGG complement(4087068..4087730) hypothetical protein; Mkms_3873 N/A MDKKQATVYDKEIRRLVGKIQDDLDTLAHLINQMLEGQAHLALGFKTPQAYLQDVFRIDGVSRVIEQRRPVVAMLTQKGLSQRAIADIVGVSVGTVVNDQAASGAQKLSTSSEDRVIGRDGKSYPATKPKPEPEVSDDEIIDYQAAQDDFNRLTSSMFAAKRKAQDALSLALHLRGFNEDEKRSIVADVADEVIDVFNAIKDAAKGRSMDAELRKLLDQG complement(4087754..4088128) hypothetical protein; Mkms_3874 N/A MSRIPLWDRAIHITSRTLSGMTINMSIPTRDEIENLSDTDHKVLENRLRRAAERQDLRLLKSRARDPRSRLYGTYMLTDQNNGVVFADHSTGRGYGLDLVDVAEWLFGDREQFAVQADTREALR complement(4088922..4089281) PHAGE_Burkho_KS9: homing endonuclease gp49; Mkms_3875; phage(gi255033732) 6e-14 MPRAPKMCGRNGCRTIVHPPRKHCPEHSGWNTSPRTASAAATERSYWRTVIRPQALARDNHQCQLRFPGICTGHATEVDHIVAVSDGGADELDNARSACRRCHARRTAQDAARASHRAR complement(4089281..4089595) hypothetical protein; Mkms_3876 N/A MIGATGSPQQAAEKVAADLAALAEKLDVLRERPDWHHDDVLAPALAALTSAAKSTPAQRAKRRAAKDEARADELARAKAARNRFRTPASDRRTGGPNAVKARRS complement(4089612..4089941) PHAGE_Gordon_GTE5: hypothetical protein; Mkms_3877; phage(gi359802320) 9e-11 MPRNRFKPGAEHPNWRGDAASYAAIHYRLRTTLGSARDHRCVDCGEPAKHWSFSGCESEIPRRRNEAGRVISPPYCPHPEHFSPRCIPCHWRHDGAADRLNKKPAKKSA complement(4090212..4091069) PHAGE_Synech_S_CBS3: major capsid protein; Mkms_3878; phage(gi331028011) 8e-08 MAFLSTSAGSILKPEEVHDLIVQPTQEQSVAMQTATVVPTSSAEFRFPVVVEDAAAQWLSEGEEIPLTDPTVDEVVARPKKIASLTKVSRELAEDSSPEATALVGASVARDMARRIDAAWFAASTAKGPAGLASLIGTAQSVAGGAYTNLDALAEALSLIEDVGGNPTAFVSNSSTVLALSKLKKTSDSNEPLLSPNLATGATQRIERQLLGVRLHSTPDTNLEDDVIWAYDQSKVFVVLRRDVDLAVDQSAFFTSDSLAVRCTMRIDFAFPHPQSVVRVGPDGS complement(4091298..4091522) hypothetical protein; Mkms_3879 N/A MPASKRSKRQIAIQRSQRRHRPDDPAMKPQPWHPLPDGDVRPFVPRNQRNATRDERGRVRNTEEVHDELRRLNP complement(4091522..4092169) PHAGE_Strept_phiSASD1: gp26; Mkms_3880; phage(gi298103491) 1e-07 MPESSTTATDSGSSTGAEGGAQHQDSTGRELPADSPEATERQDNPASEAPGTDTGGGAGEPVADSRQVSDDPPADLQEGEPDPADDGKPDREAAKYRRERNEARAEVDRLRATVETFQRAEVERLAALKLIDGRDVWAAGAKLADLLADDGTVDIEKVSAAAQEIAATRRHWAKQAAAPASVVTGNQKPGYGDDEKTTWGDVFQRVRNGVAPEDR complement(4092172..4092390) hypothetical protein; Mkms_3881 N/A MLWLAVIDRDYPAVDRALDMLPADPEVRAIAITLCEIGIAIEPRLRCDAARDQALTQLALLDHTFKMLTGRD complement(4092368..4092619) hypothetical protein; Mkms_3882 N/A MRCPLCSRLTWLDRLPSTRSVPAHCNPHALLRLETHTLRRTIEHHRDQRPEAAARRAFIAQCRAQHLADHDQGGADDAVAGGD complement(4092704..4092982) hypothetical protein; Mkms_3883 N/A MPANIFRLELNERDYQRVGAALAALVHCDARGIADVLKDATEAKRGFHYHVAVLQTLAHRMGLDGPDRDELLANLQQEIAELARRAEAGGDD complement(4093008..4093403) hypothetical protein; Mkms_3884 N/A MTERSGLDRPNPHLNGWSTNDVVRLLLSLAEELQNLDAELSGLERDAVTKAEQLNVAQAKALLTATGKTVGEREAQALLATEAERLAARLAEINVKATKRRVETLRMRIDIGRTVCATLRSETELERSSWR complement(4093396..4093938) excinuclease ABC subunit C; Mkms_3885 N/A MLVGRIKDAAQMASIIAHTAAAGLDFEQDLADLKSHLDRAAWSTDQHLRGCLERLEAKEAAAQAHSERVEQIKRSMTINVVAEHLDEFFNPHGGFVYLLWGEDPNTPLYVGQSTNILSRLGAHMGDKTKRALVKRVQLIRCSTEKLADTEWRLIQHYQPPLNVVGCSRTGRLGESGIGHD complement(4093977..4094297) hypothetical protein; Mkms_3886 N/A MRPNPHLVQPPVPDTPRLREAREALQTCYGKQESIAAIREYLAALAEARARPGRGADAAVAERLCCECQTRPATTDDGLCRSCHIAETREQAALLLDVPPEKENSR complement(4094287..4094520) hypothetical protein; Mkms_3887 N/A MTGRWRCGRCGHDIAHHGLYRDPVCVGNIADDDLPDCECQAFVDGSQAPAPQEGAVRASAGRSAANPAVSGGDLDAT complement(4094517..4095341) PHAGE_Mycoba_Llij: gp69; Mkms_3888; phage(gi109392255) 2e-08 MLVGPVSAYRSPALSQMETDNRMSDYAPLYGEVWGDPRWRQLSKTAQWLYLMLMSSPSRNAAGIVQMQPIGWANCAVDATVDEMHDAIGELVAQRYIDVDDDTQEVILLGFIENDAIRNPTFYVSSLKHARNCQSPRLRAVLFKAVQGVHPPDLSCFKAEKVRERRQAGIDAAYDAFAERVQRDAAADLNLPAVTFNSSPLPASVAATTTASVTTTTTRGDAMGDAMGDQTMGHRMGDAMGDVMCSMHPDQPAVDGSKWCADCLERERRWQGQS complement(4095556..4095822) hypothetical protein; Mkms_3889 N/A MSGKACPAMESTTPNTTPELTYASISVAHRALIDALPPGSEVPSRMFIRRAAARGDIRSINIGRRITQYHLDDVRALVVIPGVTRRER 4095780..4095791 attR N/A TCGGTGTGGTGG complement(4096083..4097492) PHAGE_Strept_R4: recombinase, serine integrase type; Mkms_3890; phage(gi414090037) 5e-56 MRAAIYTRISKDQTGEGLGVQRQLDACLALADRLGWAVVTRYDDNDLSAYNGKTRPGFEALLDGMKRGEFDAVICWHTDRLYRSLKDLVRLLEVAVGIDIRTVCGGDLDLSTPTGRMLATILGGVAVQESEHKGERQREANEQRAAAGRWHTANRPFGYTMSGEALEPEASAVRQAAADVLAGKSIRRVAMEWNEAGLRSTLAGRERKSKDGTVVKVVDGRWNAPRVRQLLLRPRYAGLRVYRGKVVGKGDWEPLIDEDTHRGLVAFLSDPSRAPRTKFERKYQGAGVYRCGKCGGPMRTGKPKGGRRTYLCREYSHVVRQGESLDRYVEMLVLDRLSRPDVHLVLAGGDRLDLPTLHARREALQARLDEAAGMFAKREIDGAQLRRITNDLRTEVAGVDKVLADAARVSPVTGLISESTDRDEVQQRWEALSPDLRGKVIDELMTVTVQPAPRGTNGFHPEHISVEWK