gi|119855174|ref|NC_008704.1| Mycobacterium sp. KMS plasmid pMKMS02, complete sequence. [asmbl_id: NC_008704].216763, gc%: 66.63% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 174491..174503 attL N/A GCGCGCAGCGCCG 175266..176705 PHAGE_Strept_R4: recombinase, serine integrase type; Mkms_5975; phage(gi414090037) 4e-35 MAKAKTPGQRVGVGSAAIYARISADVEGTGLGVARQVQDCRKLAADRGWQVGDEYVDNDVSAYSGKPRREYARMLDDLKSGARDAVIVYNLDRLHRRPVELEEFVALCESVGVRDVATVTADIDLGNDDGLFMARIFAAFAAKESGRKSARIRRKMLQNAEQGLPHGSARPFGYEPDKITVCSKEAKVIREMVARYLAGASIRSLTIWLNDAGLAPAVAKSWQTTAVRQILASGRIAGLREHHGEVIGPAAWPAIITHAERDRILARMTARSVTKTRAPRTYLLSGLLRCGRCGNRLFSQARHNNPQNRVRRYVCLKGPDHGGCGRLTVVALPVEELLTDAVLTRLDSPHLANVLAGKASVDADVAALSAQLEADTTRLDELAALYAQGAVTAREWIAARDPITDRITATRRDIAAATDTTNVTELAGTGHLLRGQWDDLDIDRQQTIIKAVLDHAVIAAGTPGARSLDINRVRPHWGV 176910..177881 PHAGE_Ostreo_OlV5: ATP-dependent metalloprotease; Mkms_5976; phage(gi472341366) 9e-17 MREAEVARADLLLDLVEAERRGDRDRFRVLVEAVIAEERANQHHLLADRLSELITTTGQGLVRDDRAAAIRDLVHEVVPNRRLDDLELAPVPRRVVAELIEEQKRAELLRSYGIEPRNRLLLSGPPGNGKTSVAEAIAAELMLPFYVIRYEGVVSSFLGETAARLHNAFEFARTRRCVLFFDELDTIAKERSDAHETGEIKRVVSTLLLQIDGLPAHVLFVGATNHSELLDRAAWRRFQIRAELEPPSRSQATRFLERLAIRLGGDLGFAPRTLADKLAGASYAELEEFALDVRRRAVLELPDSNLKRIVQERLEHRRGQAAE 177956..180490 hypothetical protein; Mkms_5977 N/A MPRLSRPGAGRQGQRLTPQFRELTAAFDAERARLATDTPDEVDPALVVVFDLAGSVKDFRNAINQIDGLEFLSELLGDRTDPDDDFYMTERNVGRTDKPVSHSLYLVMSNARAIDELLRLFTLWQQDPSVSFERGLGKFKDAFQQLTAIRRWGPEDRIRETGLRERWEETLQVVGRSVSTVVVEAELWYRHDAAQRATAESHVAQVITASGGRILDRAQIADIRYHALLAELPIQQVHSVLNDGAESIRLLTTDEVMFVSPFIPMSVTPPTLDPVAAVQLPPGKHIDGLPRIALLDGLPFSNHAVLAGRLVIDDPDRLGENYPLSSRHHGTAMASLIIHGDLSVPGEPLDRPLYVRPIMCPHELAAGSEEVLPNQLFTDLLHRAVRRIVEGESGREPAAPSVRIINLSIGAQARALARRMSPVGRLLDWLAHTYNLLFVVSAGNHLDPITIPADSANDPAVARVAATRAVYDATILRGILPPGDALNVLTVGATHDDGLGEIDIPDTVWDITQPGAPAHYGATGPGVDRSVKPDIHHVGGRALYTRPVAASGRETVEVEIARTAIAGPGVQVAVPGRAGATNTTVFTTGTSNATALVTREASRVFDTLEAAVSGAEDAPLPDGQYHPLLVRALLAHASSWGEWDARLRHELGLDNQQARRQLTALLGYGRVDVNRLGTAATNRAVLVAGGLIARNERHTYELPLPPSLRARAEWHRFTITLAYMAPTVGQLTRYRGAKVYFATPDTGLAGGDRTGAEYNTVRRGSLQHEIIQGTTAMVFGEGDVFPIHVECMDDAQRLRAGNRVRYALVVSVETAEQTSTTIHDEVQARLRDQVRDRARGRVQG complement(180788..181225) hypothetical protein; Mkms_5978 N/A MAHPNTVNDTPGTVVPDLRNPTTPGDLPLVLALFYLVVDRRTTPLLLDQPEENLDNETIASKLVPAIHEAAGRRQTLVVTHNANLAIVGDADQIVHCQMHDRRFTVSSGSIAELDVAKFALNVLEGTKPAFDNRRHKYEAFPELA 181282..182457 PROPHAGE_Escher_CFT073: transposase; Mkms_5979; phage(gi26246249) 5e-27 MTHDHSALLAQLDALKSADVGAVFAELIRAGLQQLIEAEATAAIGAGRYQRTDGRTVHRNGHRPKTVSTTSGDVEVQIPKLRAGSFFPSLLERRRRIDKALHAVIMEAYVHGVSTRSVDDLVFAMGVETGVSKSEVSRICAGLDKEIEAFRTRSLAHTEFPYVFCDATFCKVRIGAHVVSQALVVATGVSIDGTREVLGTAVGDSESFEFWREFLASLRARGLSGVHLVISDAHAGLRAAVAQQFMNSSWQRCRVHFMRNLHTAVAAKHAPAVTAAVKTIFAHTDPMEVAQQWDRVADTLAGSFPKVAAMMAEAKTDVLAFTAFPRAHWQKIWSNNPIVIWSPAVGVVDVRHEASGSLVLLSGRGYLQPSRKQSLRRKSACYTGGFANLVG 182432..183526 PHAGE_Geobac_GBSV1: DNA integration/recombination protein; Mkms_5980; phage(gi115334655) 3e-12 MVSPISSGESWTVLGDDDAPVAPIERYLRYLTDIERSPNTIKAYAHDLKDWFTFLAGRGPDWTAVQLEDVGAFVSWLRLPMALRQSGIVMLPTMEHHCGEATVNRKLSALAAFYTYAARDGVAVGELLTTWQVGGSRGGWKPFLHHVSNRMPRSRRMVTLKTAKKLPRILTPVEAQAVLDSCDRLRDRFLLAVLYDTGMRVGEALGLRHSDIAAAECEITIRRRDNDNGARAKSVSSRTVPVSPELIRLYADYLHDEYGDLDSDYVFVNLWGRPHGHPWTYAAVYDLVRRLRRRTGIDFDPHWLRHTAATRMLRDGIGLEVVAKLLGHANVTTTAATYGHLTVEDARKVLQQAGWFDGSGQVHL 183571..185736 phage integrase family protein; Mkms_5981 N/A MAGVRNEFRSDVLEFDAEDPVFGGGSCLVDGCERSARGRGLCPGHHQRWSNAGRPALDEFAASTDHRWRKQRPNQCCRARACGYGSARGGLCQLHAQRWERAGRPDLDQWCEDPPPIKKPVPDARCRIEHCSLWPQAQLAFCHTHANTWKANGRPDIEEFASRFASTEIPPNETIVLGSLTPQLKLEMQYVLQFRHDERRGKLTPTIVARVVRLLAQAGVASLLEHDEDAWREHSASLRTDTRSRGLLIYAYRTVVDLAEAGGWEAEYRRDVWRMHRLGFEGRYTLQFNRIPQPWLREPAKRWIRLRLSRGLGLEAGGGRPVLAIARFAQFLAAAGIDRIELIDRALLERYLADLHRELRPQHQGSHTGLLNGFFAAIRQHRWSPDLPATAMFFTEDYPQRGEHLPKALAEHVMTQLEHPDNLDRWDNPTYRLITIILMRCGLRITDALRLRGDCITTDADGAPYLRYFNHKMKRDALVPIDPDLADLIGAQRDRTSQRWPDGTPLLFPRPTKNLNGQLPLAIPTYREALGRWLHACDICDEHGHQVRVTPHQWRHTLGTRLINRDVPQEVVRRILDHDSPQMTAHYARLHDTTVRRAWEAARKVDIHGHTVALDPDGPLAEAAWAKQRLGRATQALPNGYCGLPVQQSCPHANACLTCPMFLTTPEFLPHHRAQRHQTLELITTAEARGQNRLAEMNRQVLGNLDTIIASLDTEAPAHEG 185726..186136 Tn554 transposase C; Mkms_5982 N/A MKADNSIHIATAAKQRHEYTRAKAIAALHELDQAGTAITFEAVADHAGVSRSWLYTQPDLKDEIRRLRSMRQRNPTDPTPSRQRASEESLRQRLDIATRRNRELAEENQRLRRQLAKALGQLRDDNVNPRNHISVR 186334..186346 attL N/A GCCACCGCGGTGG complement(186474..187550) hypothetical protein; Mkms_5984 N/A MQRSEEIETTRSNLLTRRSTNEQQQAQLRQRLAAMETIAHSAEVIRTDVIELTRKAEELLGGDDDPFLSLTINTTRYDTWRAATEAALTSLKTEHDVLAHDIETQEQARTENADALAAADSARERARQRVLQSEERVVALIGDENDEESHAGLTSLLHRIKEAPTKLSELREQIVERSRHIHQALDAQLRAVESLYAPASNFIARSEVVKTAGLEFNAELRILPTWRSVSSGLDGRRNGEFLDWLAELPQRVEDTSWGQLAAQLTEALDRLEHERGDTDSELRDPASALRSTTTLDDFLMSMFDLSWLEVRFGLTGDGLPLSQLSPGQRGLVLIASRGVVDFGSGVVHALRSTSRVER complement(188280..189593) PHAGE_Spirop_R8A2B: putative transposase; Mkms_5986; phage(gi9626114) 9e-10 MQRQFWRLIAQGVSTDDAAAEVGVSTPVATRWFHHAGGMTPISLDEPTGRYLSFAEREEIALLRAQGAGVREIAREIKRDPSTVSRELRRNAATRSGTQVYRAGVAQWKAQQAAKRPKPAKLAVNPQLREYVQQRLDGSVRGPDGTAVAGPQTKAWNGRNKPHRQDRRWSTAWSPEQIAHRLPLDFPDDESMRISHEAIYQSLFIEGRGALKRELVACLRTGRALRVPRARTQNKPQGHVTADVVISKRPAEAADRAVPGHWEGDLIIGAGRSAIATVVERKSRSVMLVHLPRLEGWGLAPPVKNGPALSGYGAEAMNAALIASLAQLPKQLRQTLTWDRGKELAAHAQFTFDTGTKVFFADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSAQDLEAVALTLNNRPRKVLGWKTPAEVFAQQLHSLQQPGVATTD complement(189569..190333) PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Mkms_5987; phage(gi17975200) 3e-31 MLTEHAVPIAPRTFHAWAVRAPSKRALWDATITEILAGYYEPDEHGRRRPESLYGSLKMWAHLQREGIPVAKSTVERLMRKNGWQGVRRQKRVRTTIPDPEAVRPPDLVDRQFGVAAPNVLLVADFTYVKLVTGVFVYVAFVIDAYAGSIVGWEASASKHTRFVESALRQAAALRARQGHPVDGAIHHSDAGSQGGFNWSSQHLDHGGVVWPSVRTRNRLVGDGSGRLTVRCGLRCAHQGARTRRGRCSVSFGG complement(190399..190713) PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Mkms_5988; phage(gi17975201) 1e-16 MPSKYDPETRAKAVRLVREHREDYPSEWAAITAVSKRLGMNAETLRNWIRQQQVDDGDRDGVSSEAAAEIRALKRRNAELEQTIEILKAATSFFVRESDPRNRR complement(190825..191142) ATPase involved in DNA repair; Mkms_5989 N/A MLGVGKTEWRDIKWNDQSIAAKKNVINSAQFIFSAYEDTARWRDDVSDLRKSKVTHQLLDCSDAHYFSDSDQHMRRGIVNTCGSACFRRPPFRLADRRLRAVSVG complement(191311..192138) PROPHAGE_Xantho_33913: ISxac3 transposase; Mkms_5990; phage(gi21231086) 2e-38 MAVTCRVLKLARQPYYRWRAHPVTDAEIVEAYRANALFDAHKDDPEFGYRYLVEEARDAGEPMAERTAWRICSQQGLWSVFGKKRGKNGKPGPPVHDDLVERDFTASEPNALWLSDITEHRTGEGKLYLCAIKDVFSNRIVGYSIDSRMKSRLATAALSSAVARRGDVDGCILHSDRGSQFRSRKFVHALHHHGMVGSMGRVGAAGDNAAMESFFSLLQKNVLDRRRWDTREQLRIAIVIWIERTYHRRRRQLTLGRLTPIEFEAIMTTPASQAA complement(192165..192473) PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Mkms_5991; phage(gi17975201) 3e-08 MPRPYPREFRDDVVRVACNRGDGVTIEQIATDFGVHPMTLTKWMRQADIDEGTKPGKSTSDSAELRELRRRNRLLEQENEILRRAAAYLSQANLPGKGSTRS complement(192525..193118) plasmid replication initiator protein; Mkms_5992 N/A MNSSTTSAQLVLPGVPDTVDTARVVEQMVRRAASMGYESWWRRAESVGFCAHPIQLIGADEYGRQRVVWTRCNNRRAHICPSCSDLYARDTWQLVHAGAAGGHHGMPTTVGSHPQVFLTLTAPSFGAVHTATMSQDKTAQVCRDQHRIGGYRRCPHGKPLWCNTTHDYSAPLVGQPLCPECYDYAGHVLFTWGLLHD complement(193111..194553) PHAGE_Mycoba_Omega: gp203; Mkms_5993; phage(gi29566938) 3e-12 MTSKKNTTNNGPDNNDWFAELVVSLFTAAGYVLWWAVLFPAISLPIIASLVLAISHGPRVGLICAIVCSAAYAVWAWLQPGSFRAWVTEPVRRRWLTWSRYARTWESTCTLHGLTNTLSGRTLTPALRAVTIGKTTDVLAVRIVTGQSVADWHKQSDALAAAWRADRIGITATSPGELRITLMRADVLAEPIALPMPTPATPVDLVSVRVGITEMRHWWQVPLLGHHVLIAGATGAGKGSVLWSLIAGIAPAVKTGLVRLCVIDPKGGMELGAGAPMFTVFTHDATDTTLELLRQLATVMHARANRLRGHTRLHTPTTSEPLFVVVIDEIAALTAYVTDRKVRTEIEQLLGLLLSQGRAVGISVVAAVQDPAKDTLPVRQLFTVRIGLRLTEATQTTMVLGQGARDAGAECDRIPDATPGVGYMMVDGTAQAQRVRAFHVTDHDITALATRFRRPARRPNNNHQPRSTDTGHTAGEGSGE complement(194643..194981) regulatory protein; Mkms_5994 N/A MRLRIDTSGTRFIVTRAPEPRVNFETGAPKVDTATGMPLYATQVLALDDSGGEVLNVTVAGDPKVTVTQAVSVVGLVAIPWAQGDRSGVAFRADALTPATGAVPSEQTRPQK 195330..195342 attR N/A GCCACCGCGGTGG 195470..196018 XRE family transcriptional regulator; Mkms_5995 N/A MATASAGGPFTATLYASRTQLPITTWQQHFADATTGIDILVLAATFLFDTLDGFLDTLLGAAARGVSVRFLVGDPDTATTILRGEEEGIGEAVIARCRTSVELLAPHAGTPGLDIRTHDTALYTSIFRVDDAMIVNFHIYGSPGRNNPVLVLSRHHEPRLWATLEEAFTQVWDHARPLTAKG 196026..196493 PHAGE_Acinet_133: putative bacterial NUDIX hydrolase; Mkms_5996; phage(gi326536354) 2e-05 MRTDYYNDPNAPAPNSVVPSASAIVTDEHGRILLIKRRDNTLWALPGGGHDIGETIADTAVREVKEETGLDVEVTGLVGVYTNPHHVVAFTDGEVRQQFSLLFATTVLGGTLAIDHESTDIAWTAPEEIADLDIHPSMRLRIEHYLQHRDSPYLG complement(196503..197096) metal dependent phosphohydrolase; Mkms_5997 N/A MPSAATGLRHGAVARRLAGVGEVLAQRARREAETRLVGQPRRLAHVRGVATTAERLSRRFGAQTADCLVAAAWLHDIGYAPSVRRTGFHPLDGAEFVRSAGFGELVASLVAFHTGAHAEAAERGLSGLSAFSDPPSDVLDALTFCDLTTGPDGAPISPRDRLRDVLARYGSEDPVHRAVDAGRDELLAAVRRVRDWL 197587..198156 TetR family transcriptional regulator; Mkms_5998 N/A MRGDLKELSGPQARTRAAILEATASVLARDRTATLPEIAAAAGVGRTTLHRYFIDRDRLIYEATLDSVRVINETIAAAATDEGPVLDAMRRLTTTMVPVGDRIVFLFADPAILRDIPAEDQPDHTPIMKLIVRGQRQGVFDTEISVEWIELAFFALLLRGCREAARGLVPPGSVVTSIIRIFERGVTTG complement(198246..198710) hypothetical protein; Mkms_5999 N/A MTASWAALTIISLAAVVVFAAFGAVFVIRRVRRPALPLSDEIGGISAVLRKLRKGEPMTEEEVAVARRAISDRSSLLAFCIPAGLFSLGCFYVFGSLEHLHGATPSERTFLGVFPMLTATNFTIQLLRGASLKRRLRRRSQPPKPVAPSPQSET complement(198707..201544) MMPL domain-containing protein; Mkms_6000 N/A MSSHRAKRPFIASTVRLLAVPIVVFWALLAVSTNTFMPQVERVAEELAGPMVPTYAPSQSGMLHIGEKFQESDSTSLTMVILEADRPLEDQDHRFYDDLVQRLKQDTAHVQYVMDLWGKPITAAGAQSVDGKAAYVLIRIAGDSGQLRANQSVDAIRHIVSEQPPPAGLKAYVSGAGPLASDTLTIANGSLNNVTIVTIFLIIGMLLLVYRSVSSVFMPLATVLIEMLVAKGVIATLGHLGYIELSSFAVNIVIALSLGAGTDYGIFLMGRYQEARQAGESREDAYFTAYKGVLPVIIGSGLTIAGAGFCLSLARLNYFHTMGPAVAISMLFTIAAALTLGPAILTIGSIFGLFDPKRLANAHLYRRIGASVVRWPVPILAASTAVVMLGAVFVPTYRVSYDDRTYQPADAPANQGFAAADRHFPPSKLFTEMLMVETDHDMRNSADFISLDRVAKALIRLPGIAMVQSVTRPLGRPLEHASIPYLFTTQGSGAGQQLPFAQQQNANTDEQAKIQAQSVETLKQTIALTQSLAAELHSTALTIDNLHQVSENMRDQIANLEDFFRPLKNYFYWEPHCFNIPICWAFRSLFDGLDNIDALEANIADAAMSIEAVDQLLPQMISQLQTMAEHSQALLDILVNSYGPANLQSTQTEQTFEDLINVGNDFDTSRSDDFFYIPREAFDNEDVKTGIELMMSPDGKAARFVITHEGNAMGPEGVEHVEAFPDAVKIALKETSLAGAKVYIGGAASNNKDIKELAASDLLIVAIAAFVLIFLIMMTLTRSLVAAIVIPGTVAFSFAGAFGLSVLVWQHLIGLHLHWLVLPLTFIILVAVGSDYNLLLIARVKEEVGAGLHTGLIRALGSTGGVVTSAGLVFAFTMLSMLISDLRTIGQVGSTICIGLLLDTLIVRSFVVPCLLRIMGPWFWWPTLVRTRPLRQVSDFGVKQG complement(201541..201984) hypothetical protein; Mkms_6001 N/A MNQRSVVRAALARTWLPLTAAIVVGVGGLGMWKVHQSSAPGPVIAVNGPQAPEQFTPKQLTYELDGTLGGGGMLSYVDIDGHPHTVQLTELPWSHTETTTLTVVSGSISAQVQGGEVGCRILVNGVVHDEQSATRQDADVTCRVKSA 201986..201999 attL N/A CCACCACCCCGCCC 202331..202657 PROPHAGE_Escher_Sakai: putative transposase; Mkms_6002; phage(gi15832212) 4e-16 MGSKSSRRYPVELKARAVQMVVDLRSDTVSEWEAMGRVADLLGVGTAETVRKWVRQAEIDAGGRAGQTSEESEVLRKLRRENAELKRANAILKAASVFFAAELDRPCQ 202660..203490 PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Mkms_6003; phage(gi17975200) 9e-35 MEFISAHQHTRVGADGLKWGVESMCAVLSEFGVAIAPSTYYAHRARGGPSRADWSDAQVIDAIYRLRQSNPLYRVLGARKTWIVLRTNGLNVSRCVVERVMREMGWRGACKRRRVRTTVADPAATRAPDHVRRRFVAEAPDRLWVADFTYCRTRAGWAYAAFVTDVYARKIVGWKVATEMTQKLVTDAISHAIDTRKRSGTTSLDSLIHHSDAGSQGGFNWSSQHLDHGGVVWPSVRTRNRLVGDGSGRLTVRCGLRCAHQGARTRRGRCSVSFGG 203466..204779 PHAGE_Spirop_R8A2B: putative transposase; Mkms_6004; phage(gi9626114) 9e-10 MQRQFWRLIAQGVSTDDAAAEVGVSTPVATRWFHHAGGMTPISLDEPTGRYLSFAEREEIALLRAQGAGVREIAREIKRDPSTVSRELRRNAATRSGTQVYRAGVAQWKAQQAAKRPKPAKLAVNPQLREYVQQRLDGSVRGPDGTAVAGPQTKAWNGRNKPHRQDRRWSTAWSPEQIAHRLPLDFPDDESMRISHEAIYQSLFIEGRGALKRELVACLRTGRALRVPRARTQNKPQGHVTADVVISKRPAEAADRAVPGHWEGDLIIGAGRSAIATVVERKSRSVMLVHLPRLEGWGLAPPVKNGPALSGYGAEAMNAALIASLAQLPKQLRQTLTWDRGKELAAHAQFTFDTGTKVFFADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSAQDLEAVALTLNNRPRKVLGWKTPAEVFAQQLHSLQQPGVATTD 212644..212657 attR N/A CCACCACCCCGCCC 216428..216440 attR N/A GCGCGCAGCGCCG