gi|116334902|ref|NC_008512.1|  Candidatus Carsonella ruddii PV, complete genome. [asmbl_id: NC_008512].159662, gc%: 16.56%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
54408..56216                       PHAGE_Bathyc_BpV1: hypothetical protein; CRP_062; phage(gi313768007)                 2e-151              MSKIIGIDLGTTNSCIAVLSNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPKNTLYAIKRLIGRKFKDDIVQKDIKMVPYKIISSENGDAWVEVKDKKLAPPQISAEILKKMKITAENFLNEKVTKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKKNDRIIAVYDLGGGTFDISIIEIANVDGETQFEVLSTNGDTFLGGEDFDIRIINNLIYEFKIENGINLSGDSLAMQRLKEAAEKAKIELSSVEQTDINLPYITADKNGPKHLNIKITRSKLESLVEDLILKSLKPCEIALNDAKISKNKIDEIILVGGQTRMPLVQKMVSDFFEKVVKKDINPDEAVAIGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGIMTPLIEKNTTIPTKKTQVFSTAEDNQTSVTIHTLQGERKKALQNKSLGKFDLNNISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGVEQSIVIKSSGGLSELEIENMIKDAEANLEIDKKFEELVKCRNEADSTISIVKKKLKDENLKILDEERVSIEKSISNLELLIKGDDIDSIKKENEELLKLSDNIIKKK
56273..56587                       hypothetical protein; CRP_063                                                        N/A                 MIFNIKKLLIKKKNFILKVRKICLFCYNYFFLKCKNCFFLNLIKIKYFFCEKCEINSNLLCNKNKVFYILIFVKKKIKRRDELFLNYKEINSKILNKVIIKYND
56580..57278                       PHAGE_Sheepp_virus: CD47-like protein; CRP_064; phage(gi21492580)                    3e-05               MIKIFIFGITGKIGKTILNFIKLNKNFILLGGINKKNYKKFINNKYNFIFKLMTKNSVIIDFSNHYMIKKILFVSLYYKISLIIGTTGFNFKELKCIKYCSKYIALILSYNMSIGINILNLFFLNLNYFFLKFNFNSIIIDIHHNKKKDKPSGTALILYSKLKNINLNIFSSRIKNIIGNHIIYLISNFEILKFEHYVINRNIFIIGIFYSIIWLMNKKMGFFSMYNVFFSC
57272..57721                       truncated carbamoylphosphate synthase small subunit; CRP_065                         N/A                 MLILENGYLINCLRINKKNIFGELSFSISNYGYIESISDPSYKGQILILTNSYIGNVGYINQDIQSNKIYINTIISNNYSISSNFRSNFKLFDFCKKKKIQILTNLNTRLLIYLIRNTGSQIGCTIITKNKKNIILYIRSLTLKKILYD
57714..58253                       truncated carbamoylphosphate synthase small subunitt; CRP_066                        N/A                 MINLLIINLGTKLSLLKKLVSNNYFIIELKDEFYLKNIDGLFISNGPGYPKNFLKYKNIILYFLYYNIPILSVCLGHQIISILNKFKIFKLKIGHHSCNHTLYNDFENKIYITLQNHNFNIKKKNQKNLINNFKSLFDKTFQNISSLIFPILSFQNHPEGCSGPNDLILVFKFYKINNE
58246..61143                       PHAGE_Amsact_: possible surface protein; CRP_067; phage(gi9964567)                   9e-06               MNKKILVIGAGPILVGQACEFDYSGSQSCKTLKEENFNVILLNSNPATIMTDYEIANTVYIEKINKNSLIKIVQIEKPDFILPTMGGQTALNCILDFINSEYNFPENKILGINKKILMNAESRLIFYKLINNLNLKCPDSVIIKISNLEEINNVNFPCIIRPSFTLGGLGSGIAYNNKSLNLILKNAFLFSNEVSLDKSIIGWKEFELELLIDNYNNIIVICCIENIDPVGIHTGDSITITPAQTISDKEYQNMRDSSFIILKSIGLKGGGANIQFAINPINGDLIVIEMNPRISRSAALSSKATGYPIAKISTKLSIGYSLLKIFNNSKYGKFISGYEPCIDYIAIKIPKFNFEKYLELNFLNTVMKSIGEVLGIGFSFQEAFLKAIYSVFENNKIPSFLKNKFYNLYKNKAIKKIINSNSTKIFNIIDLFRLNVNIKFIFCVSKIDPWFLFNIKKIIEEEKFFFNKIKNNNLNYKKIDLCSNEFEKPSLYYYSSKNLYFNELRYSIKKKIIIIGSGTNRIGQSIEFDYCCAKFSKLIKKIGLISTMINCNPETVSTDYDTSNYLFFEPITIFFINNIISFIKPILIICQIGGQSPINYLIKNNKINKIFFGFDKNNIFFGKKKKFNKVLYILKLNRIKNYNCININDLILYFNIFNKTIITRLPNIIGGALMKILCNNKEFLDFINFNNIVNIYIENFLLDFKELDLDVLVENGKIIVLSIVEHIESTGIHSGDSSMIFPSYSLSSKIIKKIFFIINIFCYKLKLNGIINFQICFKKKIYIIECNPRASRTVPFISKSNKYTLIYNYVLILLGYNICFIKKKSNFYFIKSSIFPLNKFKMFKLSPEMKSTGEEMNSGLSIQECFSKLFLLSDKTVFLNTKNTYIYIKYLKKINFKLKTNSFKKKINLDLHINSYVLKRKNNMYIISDKLNILSNDMFSNKNTIIFFLSSFDKKFLLVRKLNKI
61144..61216                       tRNA                                                                                 N/A                 ACCGAAATGGTGAAATGGTAAACACTCTATTTTGAGGTAGTAGATTTTACGGGTTCAAATCCCGTTTTCGGTA
61235..62845                       PHAGE_Amsact_: leucine rich repeat gene family protein; CRP_068; phage(gi9964328)     1e-08               MDNIKNIYIDNKVLIKDLSFLINKPIEKLIKDLFLNGIFVKLNDYLFFENVKKICKKIYNIDVFKKENIKILENNNKLNKRTDVIFITVTGNVNNGKSSLIDFILKKNNVKFEVGEITQNISVFNFFFFEKKIYLFDLPGHSLFSKLININLSISDIIFYIISYEDNIDYKKINDTIIKFEKLSISIILCINKYDKFKFGKKYLNFKNEKIYISAKTGFNIKKLINTSILIFNKKNKYIDLNNPGKGIIVNSCFKNDVLITTLFIFKGTLETGNFLNFKHISIKILEFFVNEKITSKIESPNIILIKNIQFPIEVLFEISNTRKNYFIGIDYKDKYYNFTNFYIKVSTHNMGFSIMNFYNDLKLNESINIVKLSIGVLNDNDINYCLNFNCIIITVGILISSVLKQKILINKIKFKEFDLVNDLIDYFKNFYKCNKIEKTIGKLKIQEIFPSGKLNKIAGCKVIFGEVNLKNNIKIYKNLKLIFKGKIKSIKIKNQTKEIVILNEECGILIKNFNNYEVGDIIESYIYEYDKKYIE
62817..63014                       hypothetical protein; CRP_069                                                        N/A                 MSMIKNILNNKGFGDPKIQNFFLIKRLKKIKNHFLINKKDLKCKIVISKLLCKIKKNINYMKNKL
63011..63988                       PHAGE_Amsact_: hypothetical protein AMV156; CRP_070; phage(gi9964470)                3e-07               MIYLNNIFEKIFIKNNNSKIIKFGIDPTFFSIHLGHLFIINYLFFLIYKKFIIIIIIGDYTTKFKKKINLKNLIINSICLKSQIKNILGEIDVVFNSIWYNKFNLCYFINLINLVSIKNYINKTLKNNLSKKISNYIYPTIQSYDSVFLKSGFEIGGLDQLLNIICGRIFQSKFNIKKQNIITLKILSINNIKISKSKNKHLLNAYKQIYNFKLLKLVFFNFKNYNKCVYKKTFFLNLVLLKKCKIFFFKKKIYFLNRNFISFYFKKIFNLKKFNFYKLIYNKNIIINKKILIKNVYFRKHIFNIKNYKILVYDKFYKFVLKKKK
63948..65123                       PHAGE_Amsact_: putative vaccinia G1L metaloprotease; CRP_071; phage(gi9964570)       3e-10               MINFISLYLKKKNNFRFPPDPNGNLHFGHTFSIFINKNLSKIKKGNFFLRFDNTNLINNFSFFYKNIKNDILWLNLKWNGKILFFQNKINIFYKYLIIFFKKKKCYYKKKKIINRFFLNYIKKLNVFECFIFKNNFYEKYNFVILIKKKIIYRKVKKQRHWIINSTYDFSQPINDYLNFISISICTNEFKNNSKFYHYIFKKKILPIQIEFKKKNFKNTKISKRKLKFNKIYNFFFLRKIGITPKILKIYTNIIGISNKNIYFKKKDLKNSIFFELNYLFKNCCYFNNFIKVKNIKKNIVISSLFNFKNINFYFFNIRFNFFFFIKKTYYKKLKKIFLNKKRFFINKKKKILIVLIKLIKNKYINNNIDKNHYFNNKKKLLFKKQLISNVN
65163..65236                       tRNA                                                                                 N/A                 CGGAATATAGCGTAGTTTGGTAACGTACTTGCTTTGGGAGTAAGTGATCAAAGGTTCAAATCCTTTTATTCCGA
65237..65310                       tRNA                                                                                 N/A                 GCGTTTATAGCTCAAATGGATAGAGCAGTGACCTTCTAAGTCAAAGGTTGTAAGTTCAATTCTTACTAAGCGTA
65313..65385                       tRNA                                                                                 N/A                 GTAAATATAGCTCAGCTGGCAGAGCAATAGTTTGTGATACTATTGGTCGCGGGTTCAAATCCCGTTGTTTACC
65412..65996                       PHAGE_Entero_mEp213: head maturation protease; CRP_072; phage(gi428782594)           8e-13               MIFLPTVIDKNIKGDRFLDLYSKMLKERVIYLNGAIEDTMASLIVSQLMFLDSENSKDIILYINSPGGVVSSGLSIYDTIQFLKSDVSTICIGQAASMAAVLLAAGKKGKRFCFPNSRIMIHQPLGYAQGQASDVEIHAREMINIKQILCEILSSHTNNSIFQIFKDTDRDNFMNCKQTLKYGIIDNVLYKKWI
65971..67038                       PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; CRP_073; phage(gi15834112)     2e-19               MFCIKNGYKSINFSNYLNPEKIKLELDRYIIGQNETKKIISVAVYNHYKRLFLIKSKKILLEKSNIILVGPTGCGKTLMVKTLAKIVNVPIICVDATSFTEAGYVGDDVESIIQKLLHECNYNVELTEKSIIYIDEIDKISKKTDFFSGKDVSGEGVQQSMLKLIEGITLSIPSLVEKKNSQQIFNIDTTNILFIVGGAFSGIESIINFRINQELNFIKKNFELTDIINYTSSEDLINFGIIPEFLGRLPIIAKFKELSESEYIYILIKPRNSLIKQFCYLFLVEGVNIKFTFNAIKEIARIAVKRKIGARGLKSILEFVLLKAMFIFPSKNNLKLILIYKDVIVLNKTPLFIYK
67801..68127                       hypothetical protein; CRP_074                                                        N/A                 MYTHVSSIIFLKILKLIGISFFFTKNGFNHRKIYIIDKSLIFFGSMNFDNRSIYLNFESLFLITNKNFIKIFLKSLFIKINCNFYNYKKKKIVYKILYIVSFLNYLNI
68124..69401                       PHAGE_Amsact_: hypothetical protein AMV156; CRP_075; phage(gi9964470)                2e-05               MNNNIFKKENFFILYGIIKKIKKLGKIIFIEFISFSKKINFLIKNIKIKIFNTITGIYFFNNNNLNIFELCYFKKKINKINLKFLKLKSKIIYFIRLFFSINNYLELDIPIIEKYTSSGSKQFLIIDKNKKKYFLSLTQSPQKIKQYYMFNAINKYFQIAKCFRDEDSRSSRIKEFQQIDIENSNTIFLNFKKKINLFLKSLIFFILKKKTLILKIKYKFIKKYLFEKKNLNLPYLYKKKIIKNSYIYILKTKLKKIEINKSFYFKLSKYYIILTLKKQDYNFCLSLKLSHKYNNLINLNIILLWIIDFYYFKNKKIKHHQFTAFKNNFKNFYNSKSLAYDVFLNGIEIGGGSIRNINFLIQNKIFLNSKKKSKFINFYKRALPHHCGIAFGLERIISLLIKKNIKKTITYYNYSKLIKSKKINE
69415..69499                       tRNA                                                                                 N/A                 GGAAAGATGGTAGAGTGGTTTAATACATCGGTCTTGAAAACCGATAAAGTTTATTCTTTCCAGGGTTCGAATCCCTGTCTTTCCG
69553..70074                       PHAGE_Amsact_: hypothetical protein AMV235; CRP_076; phage(gi9964549)                8e-05               MIQTLLSKIKCYHFDLMEFSYVKNNSFSINEINSILLILSKIMNIKYEVHVMSKYLLLSKIDKNKSINHLENKMYKINNIALSTNFCWNYIKYFNYNNILIMSVIPGFGNQKFLISTLNKVKKKINIDGGVNCYIFKNIKNYFNKIIIGSNIINIKNKLSFYKINFILNEFKI