gi|86604733|ref|NC_007775.1|  Synechococcus sp. JA-3-3Ab, complete genome. [asmbl_id: NC_007775].2932766, gc%: 60.24%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1284112..1284456)       PHAGE_Pseudo_LUZ24: hypothetical protein; CYA_1267; phage(gi167600395)               6e-06               MVFVYGSLLRGGQYHSLLQGAEFLGPDSLNHIDLYDLGPYPMAVPGRNRLYGERYRIPLGLLPRLDELEDHPRLYERQWVQLESGTFAWVYLGRPEQVQGCPLIPSGRWLPWDP
complement(1284501..1285112)       membrane protein; CYA_1269                                                           N/A                 MPAWLSALLAALGGYLLGSIPTGYWVGRCWGGIDLRQAGSGSTGATNVLRTVGKGPALLVLLVDAAKGAAAVALGSALGSPWWVVVAALGAVIGHSRSCWLGFKGGKSVATSLGILLAMAWPVALATFGVWLLGIALTRIVSFSSLLAAVAAPLLMWALGQPLPYLLFALAGGVYVIAAHRRNIERLLAGSEPRIGQKWAQSP
complement(1285137..1286150)       PHAGE_Strept_Dp_1: DnaX DNA polymerase III clamp loader complex gamma-tau-delta subunit; CYA_1270; phage(gi327198331)     6e-08               MVEGVTVLPPQHIVGQELAARLLVAALEKGRVTSSYCFLGPEGVGRSLMARWFAQALFCEASSGIPCGQCSNCRWLLAGTHPDLHWVSPTYVHQGRLIAADAPEAQALQRRSPPQIRLEQVQEVVRFCARRPMHARRSLVVLEGAETLTESAANALLKTLEEPEPAHIVLIASHHSPTPPPHPLPPTLLSRCQMVPFRRLSSAEMEQVLTALGCPELPGIPRSELIALAQGSPGRALAAQQHLQSLPPSLLQDLRRWPHSLRQALEVARAVAALDLPAQLWLIDYLQQQFWAQGSRQAIRQLEQIRQQLLQFVQPRLAWEVNLAGFDSSGNPSPVAK
complement(1286275..1286754)       PHAGE_Papiin_2: ubiquitin E3 ligase ICP0; CYA_1271; phage(gi110224439)               1e-05               MDVVNWQEVRLLLAALQESDVTELILEYKDFRLTLRKGIPAGLAAAAAAPPAAPPPEPPPASPAEAPPPESAPKPAPSHWVEVTAPMVGTFYSAPAPGETDFVQVGQRVNKGQTLCIIEAMKLMNEIEAETAGVVREILVSNGQPVEFGQVLMRLDPTG
complement(1286822..1287379)       elongation factor P; CYA_1272                                                        N/A                 MISSNDLRPGVSVEIDGAPYKVIEFLHVKPGKGAAFVRTKLKNMQTGNVVEKTFRAGEMLPAATIEKVNMQYLYSEGDNFVFMDMETYEQAPLSAAQIGSAVKYLKENMEVAILRWKGQVIDVELPNTVVLEVVETDPGVRGDTATGGTKPAKLETGAEIQVPLFIKVGERVRVDTRTDTYIGRE
complement(1287416..1288099)       PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; CYA_1273; phage(gi16129761)     5e-09               MSVPRWILGIHTTTPVLGLAVLPLEEKLGESRSRSWWLDREMAAQLHPCLKEFLAGQDWSQMAGIAVALGPGSFTGSRLGVSVARLLGQQLRIPVFGYSTLAVLARQVWQEQGSPPQPLTVAVQMDAKRGEQYGGVYRLGPEHWVAEVADQIWEEAAWQKVLRQWPQALVVDAADWVDPAPVLALAELARADFQAGLRPSWQTVLPLYGRQPPIDLRELNRSAPQPG
1288198..1289262                   PHAGE_Synech_PM2: photosystem II D1 protein; CYA_1274; phage(gi58532988)             0.0                 MTTVIQRRSTSNVWEQFCEWVTSTDNRLYIGWFGVLMIPTLLTATTCFIIAFIGAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVFCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAGVFGGALFSAMHGSLVTSSLIRETSEEESQNLGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISIMAFNLNGFNFNQSIVDSNGRVVGTWADVLNRANLGMEVMHERNAHNFPLDLAAVEVAPAIRG
complement(1289332..1289757)       hypothetical protein; CYA_1275                                                       N/A                 MDPNPSEAQLKALWQQIGERATNPLLVLPGSVADPLEPGQTWADLAHAWGFSLLLTLRREAALSQATAFAALMRQAKVRNLGWVLVGSLPETEDPQALEELDAALIPRLEAQVGMPVQGRMALDGQILWDTDSLEQLGYVL
1289747..1289896                   hypothetical protein; CYA_1276                                                       N/A                 MGSTLSWTQGLWTTSCQALATAAAPGIPVQVSATITLMSSDPPPQTPRE
complement(1290363..1291310)       PROPHAGE_Escher_EDL933: putative transposase; CYA_1279; phage(gi15803522)            5e-08               MPTHSLDLRQRVVAAYQAGNTSIRQVAKRFMVTKRTVHRWVRQYQQTQDLAPKKAGTKRVGILEQHRQEVMAIITEHPDFYLWQYQELLRERLGINVSIVTIHNFLKKQGMTLKKKTYRSAKVKEEEVQRERLAYSQEVRNIPAEDLIAIDQTAVWEGMEWRVSRSLRGQRAYHYRQRYKGEKYTVIGAISLRGVVGCRVIKGGMKKGDFLEFLRSELCPKLDARKVVIMDNLNIHKSREVEELIRGTGARILYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVKTSLLLINPSSFRSWFAKCCYCTP

#### region 2 ####
complement(1429598..1429915)       PHAGE_Human__8: LANA; CYA_1420; phage(gi139472804)                                   1e-05               MTPEQEQWLIRAVQELQAAQQNQQVLIQELREGQAMLAQFFREALDRFDERTRAIERRTEALERRTEALERRTEALERRTDEMAQEMREMRQEIRDLRRDFLERR
complement(1430023..1430361)       PHAGE_Human__8: LANA; CYA_1421; phage(gi139472804)                                   2e-07               MTPEQEQWLIQAIQELQASQRELQASQKELQAAQQELRLVQQNQQVLIQELREGQAMLAQFFREALDRFDERTRAIERRTEALERRTDEMAREMREMRQEIRDLRRDFLERR
complement(1430438..1430510)       tRNA                                                                                 N/A                 GGGGAGTTAGCTCAGTTGGTAGAGCGCTGCGATCGCACCGCAGAGGTCAGGGATTCGAGTTCCCTACTCTCCA
complement(1430501..1431175)       hypothetical protein; CYA_1423                                                       N/A                 MAAEQPLEVAVALTIGSVSASGSTTARLSLAEYLKYSDGGDTRYELVAGELVPMALPTGRHVQIQKFLSQVFEAEIARRQLPWTTIQGGLGIQSPRGNRWETVRIPDVVVLPLEQWQEMGSREALIRLEDPPPLLVVEVVSESSRAADYRAKRAEYCVLGIGEYWIVDPLEEKVSLLLLHEGWYDLLELKGSEGVPSQVFVGLELQVGEILAADSGYPGRATGS
complement(1431242..1431622)       PHAGE_Human__8: LANA; CYA_1424; phage(gi139472804)                                   8e-06               MTPEQEEWLIRAVQELQAAQKELQAAQQELRLVQQNQEVLIRELQAGQQNQQVLIQEVREGQAMLAQFFREALDRFDERTRAIERRTEALERRTEALERRTEALERRTDEMAAEMRDLRRDFLERR
complement(1431698..1431787)       hypothetical protein; CYA_1425                                                       N/A                 MVLSGSLKRCAPPAALTPSPSPSPSAPRR
complement(1431851..1432150)       PHAGE_Synech_S_CAM1: ferredoxin; CYA_1426; phage(gi472339494)                        4e-34               MAVYKVRLINEERGLDVTIDVPDDEYILDVAEEQGIDLPYSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEQGYVLTCVAYPTSDCTIITHQEEALY
1432352..1432498                   hypothetical protein; CYA_1427                                                       N/A                 MAELPQIPPVILPQSSLFNLDLAGIPVAPGLHLEKKWQDLPSWADLTV
1432665..1434956                   PHAGE_Plutel_granulovirus: PxORF73 peptide; CYA_1428; phage(gi11068076)              2e-08               MQRWLLKSLGSLTLASAVVLLPVILTGCGESSTSPTVPVPPPPPPPPPPAPTPTPTPTPTPPAGTVRVTPETDINRIIATSDRTQPLTIVLGPGVYRQNIVIDRSNVTVRGATGLVGDAIVVGAEKDAPVQVTSNASGVVLENFSILNTRSLAPIEYGIDAEGATEVTVTGVDIVLFPTVTTPASRGVAISFGSAAAGATSKNLTVTRSNLFVAGAADSAGIRIAGDNAGINLRVEANNIFLGYAAPPARVQTQLINLVPQDVGEGSAAIFIEPAVTGLSLVAVDDNIIDPITPTANVYAIRDERGSGLNAVERRDIVARGTSLAFNSNTSNIYLSITRAIAEAAGPNQTVTAGPGSFEDEGEIVLPADRPGLTLNSVDGTSTVQSVKILAADATLGGTEGNGFRITGISPDPDAIGPAAPYQVAIGECDLANLTTRNVKVSFNDFTRPPTQVGPYVSVQVCDFSQAEVYGNLLRGFTVAGVHVVSAEPNAVTIRENLFEPAIDSPVFIAAIVDRQTLEPGTLAPFATASVRGNIFRLPPQGTLAVYARPELNLTPTSAEALGGEGTILKAFFNNTITPTPIPGFAVCGRQESLAGAPGNLLNFLDVTPRDSTPRVTPFTSTVFGRVSDALCSAVGFGPGAGLQFQPGGAPPATPTPTPTPTPQPAGVRITIPGLPANAVVTVTGPGGNPVIARSTSVAEDLAIFQEQSITIPFGGQIRVTPAIPSPRPITVGGTAINTFDNETNPGSTTYFNFGPAITVTAN
1435208..1437325                   PHAGE_Ictalu_1: ORF50; CYA_1430; phage(gi9626871)                                    2e-16               MSNRNLKHSLRSTLASLALASSLTGVVAACSADTPTVTQVPSTISAQVPETAAPVAEGLSFYYDGVKTSVSSKDAAVLFAACSLNTGDAAKIVSFVNNTLKAGPITPSDVTGLGDPLQPAISDFNGNGVVNCEDAAILFAVSTVGVDATKVNNFVSSTLKISGVSVTQTQLDTFFKTPATPTPTPTPTPTPTSNALKVTPDDLKLPSGSSQSVTVSLPSAPPGNVTVTVTPSSGITATPTTLPFTPTVFSGTVTVSSTATPGTTGTVKFSAPGYADGVVNVTVDQSTNLVVDPASLEIPANGAKSFTVKLANAPTAPVTVTVTTSTPDLTATPASLTFTSTNFNFDRTVLVRAELGAAPGAQSVLLDAGPLGQFKLPVTITPFSRTTFFVDPTPGGAGNDDFPGTAAQPWRTVWKVLDSGQSIASRVAEVAGAGNNVVVTILGGANTDNVPTSTNISTPTLLAGSVTVLQAPFPKTFTLNMGGNKLTLNKGYKLQDINITSTVSAGSGETAVLITHPTAGLASVDVKCSVTANNTAVKCVQVQGAGSHILRDVRVDVADAIGTSGTPSIGILNDPNVNLSIIGGRVRPIAAGSGVTRGAVTLIDSQGVLTVTGLTVDMTNEGHSQDSTGILLNAPGSSVTGSTIKVSYSANARGIKVLDGARKSTVEGNTFTASGKGIGVDGDNNLFSSALRNNNFEGSFTREVQ
complement(1437306..1437467)       hypothetical protein; CYA_1429                                                       N/A                 MQPDFPERGKGMQSTGAYKKAPLGGRGGNSFQRQLRKNFCCKGSQKVVIELLL
1437521..1438027                   PHAGE_Edward_MSW_3: hypothetical protein; CYA_1431; phage(gi448261087)               6e-13               MAKRIVWLLGVGLALAACSGRARGPSLCVNARQVTAEEVLAAKGKNLSGCQLIGVVLANAKLAGADLGEALVQGGVFLQADLSGANLAGAYVENTAFNGAKLRRANLQKARFPDSSLAEADLTGANLQEADLRRANLRGAILKGAKLEGALTDGETICPDGERGPCRW
1438097..1438597                   PHAGE_Burkho_KL1: tail tape measure; CYA_1432; phage(gi399528734)                    3e-10               MEAILEVLAQQTLATAQATARNTEAIERLFAATAQNTEAIGQVFAAIGQNAEAIGRVSTVTVQNTEAIERLFAATAQNTEAIGQAFAAIGQNAEAIGRVSTVTVQNTEAIERLFAATAQNTEAIGQVFAAIAQTRESIAELRASIAELRQVVEQQNRAITYLMSQD
1438736..1439401                   PROPHAGE_Xylell_Temecula1: serine protease; CYA_1433; phage(gi77747673)              5e-52               MSDRNFPTNWRVSLVSSVLAAALAGLVVACGSSSRDPLTVATPTPTPTPTPTPVPTPTPTPTPTPTPTPTPTPTPTATPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPAGPRITIPGLPAGATVTIRQADGTVIATSTSVSGDVVIFPTSFTIPFGGQIRVTPAIPSPGPITVGGTTLSTFDNTTNPGSTTYYNFGPAISVN
1439403..1439495                   hypothetical protein; CYA_1434                                                       N/A                 MGLALEGQSVSIQEHASNPKTLNFAEFTEL
1439922..1441664                   PROPHAGE_Xylell_Temecula1: serine protease; CYA_1435; phage(gi77747673)              9e-26               MASHNSKSRFRHPIAPLVLASSLVGGVAACSLTSDPPAVTQVPPTISAQAPETAVQGSESIAFYYDGVKTSVTIKDAAVLFAACTLNTNDSGKIVNFVNNTLKVGPITAADVTGLGDPLKPSVSDFTADGVVDCKDAAVLFAAISTGLPPTASKINSFLATTLKLSGVSVTQPNLDTFFSGPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPAQFYVHPTRGDDNNLGTSRLEPFKTVERALESTEVQTAASLGGGTNVIVRIIADGTEEVSSTNIESLTLTAGSVTVLPDSDVNFTLKLMNGKLLTLNKGYRLQGFKIESGDPGGTNTRAAAITLAAAGTPLKDMLIDCTGLGTAGTATAGVGSGDRCIEVTASSATVTLDNVDVLIKGDKDYTAGIRHVGTSTILRVINGSSVVATGQGSSGNQGVVGILENSDLGSVEIEGPNTEVNLSAIRPVASGARNVAILLRGNSFRTRKVINSEIKVNEANPGQIGVCVGSTINVTVQGSTFTNSSPGRNSIAICQRTTGSVSPDPLSSGNRFNNFSTSPDKRFVTFPDCSCPSSS
complement(1441806..1443266)       PHAGE_Rachip_MNPV: hypothetical protein; CYA_1436; phage(gi23577891)                 6e-16               MSPRKRLFWLMATFLLGILAACGLASGPSLLSRPETSSPAPEGGVAAYYDGNPQSVTIRDAAIAFAIASGITQPSQIVSFVNNVLRLQPPLTLAEVTTANPNPVAISDFDGDGTPGTIRDAAILFAIATLQTRDANRINTFVNTVLRLQPPLNLTPEQAARLPGPGFVPPTSPPTASPSPTPPPPPEDPSTPTPLPVPPTPTPSPPPPTPTPSPSPSPGGFNIEIEFIDNSLSPSQREVVLRAARRWEQIITGDLPDVTLTLQAGFCGAGFPPTPLVNRPVDDLLVQVTGARLLSGPDSDGPSRVLAQAGPCGPLRPGIDIIPYARMGIDPADLNRLEEQRSLFDVVLHELGHALGFGTVPNWRPLLLNSGTTNPRFAGRQATAEYNSLGGSGNVPVEVEPPPESHWRRTLGLELMTPVLPPPPARPALSRITAAAMQDLGFTGVNLSAADPYALPPEGRIRPGEGLFLGNDAVFGPIGGEIHPLP
1443425..1444693                   PHAGE_Microm_12T: hypothetical protein; CYA_1437; phage(gi472342811)                 1e-06               MAKTAVSNPVQAQFDEFPYPNVPIEQTVTDNFALFANSITTARYLRDRKVVSPEGKVILNAGCGSGWETLVVATANPGARYVGVDISPESIKTAEQRFKFHKIENARFYVMDITDMSALGEEFDFIACNDVLYLLDDPVAGLKGMRQVLKPDGIIRTNVHSLYQRQFIFNMQEAMELLGVMDEPAAKAVPLLREVMEALTDASFVKSHWQGDAIKTTAGILANFLLRSDKGFTVPQVFEMLRQAGLEFISMVNWQQWKLERVLTKPVPYSMRQLNKLSEEQKLHFIELIFPNMTRLIDFWCGHPGIPKPEPFTNDEWWNGTVQAHPLLVRLDAKQAFLNAIRDNGPVNINGWPGAEGNITIDPFSVRWLVDVFGPLPVPVQSLVHKTMEIMDWTQEEAFSQVLANLKFLEERLVILLDSPLR
complement(1445169..1446401)       PHAGE_Acanth_mimivirus: putative transposase; CYA_1438; phage(gi311977474)           1e-26               MTITSLPSRNWLRISSPSCTASAVGSTDSENTGLQSRKIRIYPEPALAKVWKRWQAACRYCYNQAIAYQRQHGAPKTARKLRDIILRSDLPEWVKDVPCHIKQNAVVEAWLAFRRSKDARFRSVRDRSHTLQFNAGNFRNGTWYPKLTRGLAFRASEEMPREWARGTELMRVKDRWYAIFPEPVNEQCSLAKGVIALDPGVRSFLTGFDGAGFVDIAKGDFGRIVRLCYHLDDLQSRLSKAPRLKRRRMRQAAFRLRERIRNLVDECHRKVAAFLTDNYRLIFLPTFESAKMVAKAGRKFGSKTARAMLTWAHYRFKQFLKFQAKKKNVVVVEVSEGYTSKTCTKCGHIHTKLGGAKVFVCPRCGRKLPRDWQGALGVMLRALRDTAFLFSNGQNAIAAPLSSNAQQCSA
complement(1446256..1446849)       PHAGE_Clostr_st: putative IS transposase (OrfA); CYA_1439; phage(gi80159862)         3e-37               MARYVKPREAADYFGVCLHTLRRWEQKGWIHATRTPSGRARRYDLDSYIRAPKKDKRVVLYARVSSRGQKSDLERQIARLVNLYPGAEVVGEVGGGLDFKRPKFLALLERVRAGDVGTIVVAHRDRLCRFGFEFVEWYCRQYGCEILVLDDDHLSPQQELVEDILTILHCFSSRLYGLRKYRAAIEKDTDLSGASAG
complement(1446917..1447375)       ISSoc14, transposase, truncation; CYA_1440                                           N/A                 MYLVRKLKLGVSEQLQLLSRAAGELYSKVLVHFWRVVRKKGLWLKPSTLMRWFPNDPENTLHAHSADAVVQSFFASLKSWRERRQTDPNARPPRRRRYYSKVQWKSSAIQVVNGKLRLSNGKGNEPLMINWAWDTPVWVEMGWDGQQYELRA
complement(1447464..1448585)       PHAGE_Plankt_PaV_LD: ABC transporter; CYA_1441; phage(gi371496158)                   3e-28               MASVTYEHVTKRYGDTTAVHDLNIAIEDGEFLVFVGPSGCGKTTSLRMLAGLEEVSAGSIYIGNRRVNDVPPKDRDIAMVFQSYALYPHMTVAENMAFGLKLRGLPRAEIESRVRGVAKRLGIEHLLNRKPKELSGGQRQRVAVGRAIVRNPAVFLMDEPLSNLDAKLRVQARAEISKLHMQLGTTFIYVTHDQVEAMTMGNRIAVMKDGRLQQVDTPQALYSRPANLFVAGFIGSPAMNFFQAKLREQEGTLWVDTGAFRVAIPPHQAEPYWQYVGKSVIFGIRPENIHDPHYQPPGIQPAPVRAKVSVTELIGHEVILHLSTTDREGILAEQEFIARVDPRTQLRVNQWAEVIFDMDRFHLFDPETEQRLG