gi|38637668|ref|NC_005241.1|  Cupriavidus necator megaplasmid pHG1, complete sequence. [asmbl_id: NC_005241].452156, gc%: 62.31%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
25517..25528                       attL                                                                                 N/A                 TACGCGCAAGAG
complement(29641..29886)           PROPHAGE_Xantho_33913: ISxac3 transposase; PHG030; phage(gi21231086)                 4e-12               MRSSMSRRGDCWDNAPTESLWGSLKVARLHGRQFATRRAAMDEVIDWLGFYNATRLHSTLGYVSPMTFEKNWFAAQQHRAA
complement(29898..30539)           PROPHAGE_Escher_CFT073: transposase insF; PHG031; phage(gi26249410)                  8e-40               MKYAFIEQNRRYWPVSVLCELMGVSPSGYHQRKQRTVSTDRPDRGRLSDDALLAHIKAIHVGVKGEYGWPRMWKELLARGVRVGKERVRKLMALHGIRARHKRKYIATTNSNHDLPVAHNLLQRDFSPAAPNQVWTSDITYVATAEGWLYLVVIIDLFSRQVVGWSMQPHMKAELVTDALRMAWFRRRPEAGLIVHTDRLNPPSIAVTCFKTP
complement(30536..30832)           PROPHAGE_Xantho_33913: ISxac3 transposase; PHG032; phage(gi21231087)                 5e-11               MTSKTKRAQYTLEFKLEAVRLVKSGQSMAVVSATLGIRAQTLHNWVKAEREGKLTGAGMKPVSPEQMELARLRAEVARLKMERDILKKAAAYFAKESV
complement(30877..31614)           putative transposase; PHG033                                                         N/A                 MDFNGQAIAGLGPLSYEAQRGLYLHPTYAVTPAREPLGVLDAYMWAREPKGADGVRPGIKESTRWTEGYERVAEQAAALPATRLVYVADRESDIMALMVKAKELGHPADWLLRSQHNRTLPGGGKLWDQVTAGKPVGRIHFTLAARQAQPARAVRQQVWAQRVTLPDAAGGVVSATCIVAREVDPPAGVKPIEWRLLSNREVDDLDAAAQLIDWYRARWEVELFFHVLKNGCRVEALQLALSLPP
complement(31682..31903)           putativa integrase/recombinase; PHG034                                               N/A                 MSVLQATKDLRKVSLWLGHAHMQTTEIYTRADPSVKLEALEAIVPPNLRSGRFKATDELIASLRPGSLMQRKK
31930..31949                       attL                                                                                 N/A                 CACGATATAGGAGGCACTAT
32075..32299                       putative integrase/recombinase; PHG035                                               N/A                 MRYTIHDRVVLARAPDGPLASHIAAFASSIAAQGYSTQSLKYHVRLVAGFSRWLGRNGIDLRNVCPDQAARYLR
32312..33313                       PHAGE_Mycoba_BPs: integrase; PHG036; phage(gi189043119)                              4e-09               MRPGPGDRAALKHLIAFLDRERLIPAQRTPARRLTPVESCTLAYVEYLREVRALSKATIINYTPFIREFLEDCFGDRRVRLSRLRAGDVVNFVQFQAQHLHLKRAKLMTAALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQELLVSIDRRTAVGRRDYAIILLLARLGLRSGEVAFLDLDDIDWNTGVLSVRGKSGLRNGLPLPADVGKAIAAYLRYGRPQSTSRRVFLRAKAPFTGFRSACGVGSIVRHSLQRAGINAPTTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIKALRTLAVPWPGGVR
33310..34254                       PHAGE_Prochl_P_SSP3: integrase; PHG037; phage(gi472343224)                           1e-06               MNTLRQAVQEYLDLRRSLGFKLREAGKALPDFVAFMERHRASFITQALALLWAQQPSNVQPARWASRLSIVREFARHRSATDPRTQIPAPGLLPFSPKRARPYLYSSDEIRRLLHAALQMPCRFARDELQPWTYYCLFGLLSVSGMRLGEARNLELQDIDLTAAILTIRGAKLGKSRFVPLHASTCNVLADYIARRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFYALSRQIGLRGAADSHGPRLHDMRHVFATNTLLRWYRSGQDPERRLPILSAYLGHVHIEDTQWYLNASPELMREAMRRLEQRWEIQP
34251..35249                       PHAGE_Pseudo_vB_PaeS_PMG1: integrase; PHG038; phage(gi374531680)                     9e-09               MTTTASLAPLLERFFTQRLMQQRQASPHTISSYRDTFRQFLKFALQRLHRQPSRMNFEEIDAPLIVAFLDDLEKRQGVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIPSKRFTRTLVQFLTRQEVDALLAAPDQRTWSGRRDHAFLLFAVQTGLRLSEMTGLKRDDLVLGIGAHVRVIGKGRKERCTPIVRSTLAVLKAWLREPKRGEGDVLFPNARGERLTVHGVQYLLNKHRETASKVCPSLKHKQVTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIYLEATLAMKEQALAKTSLAQGKPGRYRPADQLLGFLNGL
complement(35731..35931)           putative integrase/recombinase; PHG039                                               N/A                 MELLQAGVDPFNIALWMGHESLQTTQIYLDASLELKEKILANVGPHDGKPVRYRPDSKLATFLKGL
35958..35977                       attR                                                                                 N/A                 CACGATATAGGAGGCACTAT
complement(36086..37084)           PHAGE_Mycoba_Porky: gp51; PHG040; phage(gi194303347)                                 8e-13               MTTTASLAPLLERFFTQRLMQQRQASPHTISSYRDTFRQFLKFAQQRLHRQPSRMNFEEIDAPLIVAFLDDLEQRQGVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIPSKRFTRTLVQFLTRQEVDALLAAPDQRTWAGRRDHAFLLVAVQTGLRLSEMTGLKRDDLVLGTGAHVRVIGKGRKERCTPIVRSTLAVLKAWLREPQRGEDDVLFPSARGERLTVHGVQYLLNKHRETASKICPSLKQKQVTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIYLEATLAMKEQALAKTSLAHGKPGRYRPADELLGFLNGL
complement(37081..38025)           PHAGE_Prochl_P_SSP3: integrase; PHG041; phage(gi472343224)                           5e-07               MNTLRQAVQEYLDLRRSLGFKLKDAGKALPDFVAFMERHRASFITQALALMWAQQPSNVQPAHWARRLSIVREFARHRSATDPRTQIPAPGLLPFSPKRARPYLYSSDEIRRLLHAALQIPCRYARDELQPWTYYCLFGLLSVSGMRLGEARNLELQDIDLTAAILTIRGAKLGKSRFVPMHASTCKVLADYIARRKRHWAGRPVSSYLFVSNQGNRLDSGEIHRHFYALSRQIGLRGAADSHGPRLHDMRHVFATNTLLRWYRSGQDPERRLPILSAYLGHVHIADTQWYLNASPELMREAMRRLEQRWEIQP
complement(38022..40649)           PHAGE_Mycoba_BPs: integrase; PHG042; phage(gi189043119)                              4e-07               MSGLCGMRVDRGEVELSGDQEDHGAHGFEAHITAGLALGGLEQAVERLQEAIGLARLGPCNDTVEMLADHARDLLHWLDLGSHDVRAPLLEHCGNNVDLLALKDFAQLLAIQPGTGSAFGRDVGDQRVEIGTLRGWQPVAILEQRPAQAFEAWIGLLFDTPGLVHGCRSVSHDMELVEGDARVGQMLADALDERRRHVDTDHPDLLRRSVVLAQMCSELANRGSILAFGHKHDLTRVGISDKRQVVVTAPVGRFVNGGSGHAGQIEFGHREVDIALADSVHAMPRLTHRSGYSRKRHLLRKRHHHGFKQQREARELASPVRLDQHHAAVGKLHAWRADFQIAVVLEEVQVPIAFGHRVVNRVPTGDLRVGKAAAGDKVNLDRQRLGLRVEVDFPDEPRIAYAKGCFKQFAMHRSCCSLPETRHDTTHLKFKRGLSISWANGCTEIEIVLTPSFSPRASGKESIMRYTIHDRVVLAHAPEGPLASHIVAFANSIAVQGYSTQSLKYHVRLVAGFSRWLGRNGIDLHNVCPDHSAQYLRYRARHVRPGPGDRAALRHLIDFLDRERLISAQRMPERRLTPIESCTQAYVEYLHEARALSKATIVNYVPFIREFLEDCFGDGRIRLSRLRAGDVVNFVQCQALRLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVSINRRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRGKSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKALRTLAVPWPGGVR
39414..40640                       PHAGE_Ralsto_phiRSA1: transposase IRSO15-like; PHG043; phage(gi145708108)            6e-31               MHSKLFEAALGISDPWFVREVDFNAQTKTLTIQIDFVAGSRFSHPEVAGGHPVHDTVTKRYRHLNFFEHDCYLEVRTPRVKLPDGRVVLVEPDWAGKLSGFTLLFEAMVVALAQQMPFSAVARTVGESWHRVYAICERYVDLAVAELDLAGVTAAAVDETSYRRGHNYLTLVADADARKVVFVTEGKDAATVGKFAAHLRENNAAPEQIGVVSIDMSPAFIKGVSEHLPNARITFDKFHVVAHASAAVDKTRRIEQKTDPSLKGLRWTLLKDRDGLPAAQRADLDALIANVTTKRTARAWLYREQLREILERKQINVVSAMLEQWCTNVMRSKVEPMKEVARMIRKHFDGIVAWTQTRQTNGFLEALNGLFQAAKRKARGYVSFKTMRTVIFLIAGKLDFSAINPHAA
complement(40646..41500)           PHAGE_Mycoba_Porky: gp51; PHG044; phage(gi194303347)                                 6e-13               MKSTVGFPSLVQRFFTERLMQQRQASPHTISSYRDTFRLLLRFAYKRLHKPPDHLAFEDINAPLVTAFLNDLEKTRAISVRTRNLRLTAIRSFFRYAAFETPAYSAQIQRVLSMPNKRYDRRLIHFLTRPEVKALLAAPDKRTWCGRRDHALLRLGVETGLRVSEMTGLTREDVTLGAGAHIDVMGKGRKQRVTPFSKETAAILKAWMKEPRTPNSDALFPSVRGGHLSPDAVQRLLKKYATQAAMGCPSLRKKRVTPHVLRHYMPFPTMSCNRKIALYGSFEK
complement(41497..42429)           PROPHAGE_Salmon_CT18: phage integrase; PHG045; phage(gi16763128)                     5e-06               MSTLRKSMEEYLTMRRRLGFKLHEAGQRLEDFVCFMERHRASHISASLALTWAQKSPSVQPVIWAQRLGVVRGFARYLSAFDPHTEIPRAELLPHRYHRRAPYLYTDEETQKILAAALALPPESGLRRWTYFTLIGLLSVTGLRPGEAVNLELEDVDLKECVLTVRGSKFGKSRWVPIHSSTRDALADYLRRRARCLAGRPETHVFITSQGKPLSGDMVSHTFTALTREIGLRDSSAKRAPRLIDYRHLFAVTTLARLDRSGKDPVRWLPVLSTFLGHQWARDTYWYVEQHPELMKQAMKRLERRWKDMS
complement(42426..43658)           PHAGE_Thermu_26: phage XerD-like integrase; PHG046; phage(gi157265417)               5e-10               MEKLYQKTRSHSLDTPEGPLAEHLGAFEGLLNDQGYAQESIRRHLLLVADFSVWLKCKKMSIEEVTHETAQRYLRYREHHRCHRNGARYAVRRFVQLLQENGIVAKEASGAQTPVEKLVNGYSLYLHQERGLAATTIRKYRWCAHLFLTKQFGDGATRLSDLSAREIIDFVQHEATQSPGRAQSIAKVLRSFLQYARYRGLIKLDLAAAIPRVAHWSMASIPKAISPEYARRALASCDRRRPVGRRDYAILLLLARLGLRSGEVVSLTLDDIDWETGTLNIHGKGGQESPLPLLAPVGEAIADYLKNGRADSESRSVFLRINAPIRGFKTEKAVCNVVRYALERAGIDSLRKGTHQFRHALATQMLRQGSSLAEISEVLRHKSPDSTRIYAKVDLDSLRTLAPPWPSPRS
complement(43769..44293)           putative integrase/recombinase; PHG047                                               N/A                 MAGGTAMLKQTVQSYLEVRRACGFELKSQGNLLRSFAAYSDARGKSHVCADTAIEWAGLARLAPRRARRLGEVIRFARYARAEDSRHEVPPPVFGSSQRIRPIPYIFSTDEVRHLVQAASQSGRETLRRYTYSTLFALLACTGLRVSEAIGLRYEDITPEGLVIRSSKFRNYAA
complement(44269..45516)           PHAGE_Thermu_26: phage XerD-like integrase; PHG048; phage(gi157265417)               2e-12               MLSQYFKSPSHVQLLLSRPGGPLLEGFSQYLEQLGYAKSSICTRIAAASHFLCWANREGIPLPSFNELTLERFAEHLSRCQCQGFGHQRRIVSLRGARMFLTYQGGISTRAIGFTALAADLESVQFFAFCQWMRQQRGTSDATLYNHGIALRDLFRRGDDLGKLNAMDLRQFILEQSMKKGWAAAKHCTTALRMLVRFLIAEGKCAAGLEAAIPVLAHWSLSTLPRYLQLDEVERVIASCDTASPVGQRDRAILLLLARLGLRAGDIWHLRIGDIDWKDASISVSGKNGRQTLLPLTQEVGQAIVDYLRQGRPRTDTDTVFVRACAPFQAFANHAAISIIVKKAMRRAGVVCSSRGAAHVLRHSVATSMLGQGASLQDIAAVLRHQSVATTQIYAKVDIAALRQIAQPWPEELPC
complement(45699..45989)           putative transposase; PHG049                                                         N/A                 MKREATSWAAAEFKDIDLGDQRLNKRAVLLAERLAEKPTASIPSACGGWAETAAAYRFLAQDELDWRDILAPHWQSSAERMRACEVVLCIQDTTEL
46010..46327                       putative hydrogenase-specific protease; PHG050                                       N/A                 MNDNPKEFTTPPAMSLTVNDFSRHTMGHDLCVMGCLEGSSACARAEKVKFYQLNLEDADLISRKQRVLFVDASKDATLDSFRLYRAEPKMDFSFTSHGRCCTNRI
complement(46356..46889)           PHAGE_Entero_HK022: IS903 transposase; PHG051; phage(gi9634149)                      1e-26               MRKHGYSKRRTWRKVHLAMDAKSGQICAALMTHQDVGDADVLPDLLDQLPPDTLVDIVRGDGAYDTKSCHAVIAATGAQPSIPPREGAMPWPETTPGAAWRNAAIDAIATSSRREWKKDSGYHRRSLVENLMYRLKTLTGHSLWARKVGSQATEVAIRAGVLNHMNELARPQSVRIA
46910..46921                       attR                                                                                 N/A                 TACGCGCAAGAG