gi|27466918|ref|NC_004461.1|  Staphylococcus epidermidis ATCC 12228 chromosome, complete genome. [asmbl_id: NC_004461].2499279, gc%: 32.10%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
51581..51620                       attL                                                                                 N/A                 TAAATTTTGATATATTTAAAGAAAGATTAAGTTTAGGGTG
complement(60217..61578)           PHAGE_Entero_phiFL3A: integrase; SE0057; phage(gi281416214)                          5e-26               MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEIITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNILMSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRWYLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDTFEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAYRTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLIEKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIKITQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI
complement(61765..62346)           hypothetical protein; SE0058                                                         N/A                 MFKRYAAITTSAKILSHVLSTDIDIAKIRDYFIDYHAHTVSERSLADKAIEVITQFVAQNRGKFSDDTALKNMIENYGLIALKDDYIEVKIIASVFKNMLIEHHFQDVNNVVNALRDKGFIESDRDRITTKRAVKDDYGKKQSLVFYHLKLDSKYASIFGLTKDAEPIKAEINLDNKKILESWKKQNDDLIDF
62622..62741                       cassette chromosome recombinase A; SE0059                                            N/A                 MLYRYIDEIHISKNKSLVGIYFKNEPLNIVNQATQSSIA
complement(62853..63212)           hypothetical protein; SE0060                                                         N/A                 MDDRALASALGIGVGGGLAWIMEGFQSGHGFIYSLCAGLIIGLLFFEMIPESIELGGWVILLGGIAIGLVLFQSIHLLMDKITIITNSHQKDIFVRSGVLLIISIAIHNFPVGNIPLFV
63848..63946                       hypothetical protein; SE0061                                                         N/A                 MDMENKKTEWKALYDISKESEMGVAERVSEYG
64066..66000                       PHAGE_Parame_AR158: hypothetical protein AR158_C785L; SE0062; phage(gi157953975)     5e-26               MIEMKNIQEQQAHESHSHDHSHDHDHGKMPIISYFIGLVLAIIGLFLSDANLLIQNILFSIATITAGYHVIILEGIGETVENTKLKGKFTPNSHILMGLAAIGASLIGSFWEGTLLILIFSGAHFLEDYAEGKSKREITKLLEMNPTTAKLILPDGNTKIVDVSELKVGDQLQVLNGDQVPIDGIILSGTTSIDESSINGESIPKEKSKGDEVFGSTINGTGTFTMEVTKENKDTVFSKILQLVSQNQDNQTKAASIIQKFEPKYVNIVLIAIPLVMLLAPFLFDWTWSQSVYRGLVLLVAASPCALAAATVSVTLSTTSNLAKKGVLSKGSTYLSQLADIDAIAFDKTGTLTNGEPKVTNYYFTHSVNEENIIDIIVALEKESNHPLANAILEKFEVKNKIDIEVTNQIGKGLTGDYNGKNYRIGKPTSFESASEEYTQFNHDWASEGKTVVYVAENEEVIGIIALMDIPNEHAKETINYFKKLGIHTTLITGDSEMTGKAVGEQLGIDEVIANVMPEDKSRIIEEQKEKFGVTAMVGDGVNDAPALVNADVGIAMGGGTDVAVEVSDLVLMQNNLSKLVQSHKISSNMGRVIRQNIIFSMAVVAFLVVVSLLGLTDITISVIVHEGSTLVVILNGLRLLRSK
complement(67123..67245)           putative transposase; SE0063                                                         N/A                 MLMALNIRNVTAQRSENNQKNYKKDNFYITSIEIVFFHLS
complement(67312..67488)           PHAGE_Staphy_phiPVL108: putative transposase; SE0064; phage(gi119443708)             3e-08               MPIVMINIVFKRDFKLYECDDCSECPLKHQCIKYKLQIKNKNHLQSKKVDVEPVFWIY
complement(67457..67579)           PHAGE_Staphy_phiPVL108: putative transposase; SE0065; phage(gi119443708)             6e-12               MTFLNTQNGDYDEINDEFTCPNNKRLGFKRYAYSHDKYSF
complement(67566..67673)           PHAGE_Staphy_phiPVL108: putative transposase; SE0066; phage(gi119443708)             4e-05               MNKDSKAFYHFNRMPLITYEMFIKDKTKKYKSDIS
complement(67822..67992)           PHAGE_Staphy_phiPVL108: putative transposase; SE0067; phage(gi119443708)             7e-18               MMLKVVLYTYTQSVFSGRKIEKLLNDRIRMVWLSQNLKHSYKTINRFRVNPKVMLY
68194..68763                       hypothetical protein; SE0068                                                         N/A                 MVNDDFTNELYQLIVPMDDKIKENIDEVLSFYNINFKKYLFSISSLVTFEKCNKLRGRIAKYPIFTILYEKVEYDEKGIKIIINSKILNDIQTHVSHIPNTTEIYLVNFNNLNISEKTKKELVKELNKMFNDQKKRKLAHQVVNIIEIIKLDSHGKSLIDIGYFYLGAKNSALKFQKIHIQEKMDYRGK
68808..69965                       PHAGE_Acanth_moumouvirus: capsid protein; SE0069; phage(gi441432306)                 4e-05               MNQFQPYFDKKDSKTKRSNYEFDMEQFESISTLVDLLENYPLPKSENNIKHLESIKKNIFSDNADEYEKYFNEGIDKLKEGAFELQKQLYNQYPFQLLMRFQYELTELIKHISMYFKQVNQSNIYEATTLYEKLNNFILRSLLENNSEKVNFKNFLNGVKFEESTINADEEIIVKKYNDFVDNIEFNKDDFDKLYDQYEVFNSITKLVTLNEDEIKWDHIFVYKYKLKTPFIDKIIIDNLKNIKSQYIDSKTMLEREYNKNGNFIFDFLNLAKCKDENELDEEIDELLFNLDNIGNRLLKKVVLGHSKNIKYSNALLKEIRRMIKVLNLYSSQKNQSNMVVTYHQLQKSDNEFDNRINLLTKELVYLRVKKELFNNSKYTHNDDR
70136..70372                       hypothetical protein; SE0070                                                         N/A                 MSLKMESKVVVKVEHDNDKLRVELNVSKRDDFNYQMHFAISERAYALLTVMIGRALMLPRGTVFSCYERFCCKVEFIV
70397..71071                       PROPHAGE_Brucel_1330: transposase, putative; SE0071; phage(gi23502708)               2e-34               MNYFRYKQFNKDVITVAVGYYLRYALSYHDISEILRERGVNVHHSTVYRWVQEYAPILYRIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
complement(71099..71476)           lipoprotein signal peptidase; SE0072                                                 N/A                 MEIGQTIPLWEGVFHITSLRNKGAAFGILQGQRWFFIIVTLIVVLGIIYYLQTEGRNNRRISFALSLLLGGALGNFFDRLIRGEVIDSLDFRLIDYPIFNLADVFIVSGVALMILEVLLQSKKYS
71924..72112                       cadmium efflux system accesory protein; SE0073                                       N/A                 MCVCDVATIIGSTNATASHHLRMLRNMGFAEYHKKGKIVFYRLVSNHVHHLMQEALQLKEKK
72366..73133                       putative divalent heavy-metal cations transporter; SE0074                            N/A                 MFSWTVVSLVLLTSIANLVGGFIVVRKEWSPKALTYLMAFSAGFLLSIGILDLMPEGLENSPENGIYILIGFLVLFSFQRILTTHFHFGYETHEDKLSKKTGGLGAFIGMTIHSFFDGVSIVAGFEVSSELGFLVFVAVLLHKIPDGLTISSIVLVVFNDRKKAFIASAVLALATIFGGALVWLLSDTEFAAEVLGDSFARIALSFSAGVFLYVAATDLLPVVNQSENRKTGLYVLLGVAVFYIASWIIGVVGLE
73390..75798                       PHAGE_Parame_AR158: hypothetical protein AR158_C785L; SE0075; phage(gi157953975)     2e-33               MSEATKPLEEKYVYRVDGFSCANCAGKFERNVKKIPGVEDAKVNFGASKISVYGEATVEELEKAGAFENLKVAPEKPRRQAPQEVKKDKNIYRVEGFSCANCAGKFERNVKKIPGVEDAKVNFGASKISVYGEATIEELEKAGAFENLKVASEKPVRQATQEINQEKEDEKEEKVPFYKKHSTLLYSTLLIVFGYLSVFVNGDENIVTTLLFVASMLIGGLSLFKVGFQNLLRFEFDMKTLMTVAVIGGAIIGEWAEVSVVVILFAISEALERFSMDKARQSIRSLMDIAPKEALVRRKGQEMMVHVDDIAVGDIMIVKPGQKIAMDGMVVSGYSAVNQAAITGESVPVEKAVDDEVFAGTLNEEGLLEVEITKLVEDTTISKIIHLVEEAQGERAPSQAFVEKFAKYYTPIIMIIAALVAVVPPLFFGASWETWVYQGLAVLVVGCPCALVISTPISIVSAIGNAAKKGVLIKGGVYLEEMGALKAIAFDKTGTLTKGVPVVTDFNVLNKQVDENEMLSIITALEYRSQHPLASAIMKRAEEANISYSDVVIDDFSSITGKGIKGTVDGTTYYIGSPKLFKELSNSSFDKNLEKKVATLQNQGKTAMVVGTDKEILAIIAVADEVRESSKEVIQKLHQLGIKNTIMLTGDNKGTANAIGSHVGVKEVQAELMPQDKLDYIKQLKSEYNNVAMIGDGVNDAPALAASTVGIAMGGAGTDTALETADVALMGDDLRKLPFTVKLSRKALNIIKANITFAIAIKFIALLLVIPGWLTLWIAILSDMGATLLVALNSLRLMRVKD
90012..90051                       attR                                                                                 N/A                 TAAATTTTGATATATTTAAAGAAAGATTAAGTTTAGGGTG

#### region 2 ####
996895..998235                     PHAGE_Megavi_lba: putative glutamine synthetase; SE0987; phage(gi448825676)          7e-12               MPKRSFTKDDIRKFAEEENVRYLRLQFTDILGTIKNVEVPVSQLEKVLDNEMMFDGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVFKTDGTPFEGDPRANLKRVLRRMEDMGFTDFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFFDPEGDLQLTDTAYQFTAGVLKNARGFTAVCNPIVNSYKRLVPGYEAPCYIAWSGKNRSPLVRVPTSRGLSTRIEVRSVDPAANPYMALAAILEAGLDGIENKLEVPEPVNQNIYEMNREEREAVGIQDLPSTLYTALKAMRENKSIKNALGNHIYNQFINSKSIEWDYYRTQVSEWEREQYIKQY
998407..998419                     attL                                                                                 N/A                 AAATTTTCTTTAG
complement(998429..998674)         PHAGE_Temper_1: integrase-like protein; SE0988; phage(gi16271777)                    2e-09               MITYFAMNLVSRFPRSTTHNTMMYVTKKLLGKGNELSIHKLKHTHATLLLESNVPMKVIQERLGHKSEAITSDVYSHVTKK
998816..999055                     PHAGE_Staphy_StB27: portal protein; SE0989; phage(gi431809707)                       6e-25               MKRYKLLLNNINLTGVYSHDYSKIDITFTPNLPKSLLESIEAFNALNGGVSEQTRLKILPIIDNPNEEIKKMEDEQRKT
999120..1000466                    PHAGE_Staphy_StB27: minor head protein; SE0990; phage(gi431809708)                   3e-100              MPDSLEYWLERAQNVIKVESLADAQAIVEVERIILQMYAEIAKELLAFYAKYATDTGLTIQEVMKKADEFDVYAFRNKAKKYVKRKDFSDEANNALKLYNLSMKVSREKLLKQQLDLIVKDSTLDIQDEIENKLVDAVDREVERQVHILGENVKIDDTEVKAVVNSNFKGVNWSTRLWQDMAVVQKEVERTTSNVLLRGRHPNEYIKDFKKQTNTTTYNTSRLLVTESARVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHSLNSKVFKVKDMIFGVNAPPMHPWCRSTTVPHVGNWRDRFFTERKGKYRVEDKELVKEKLQEKAKKEMLEMIDDGKIKIELNNEKQERHILNTKAYYNKKYNSSILPSYITLDTKEIEKITKKEFINFPVLFDDEGKFRNKQIINYNKIIGKSYVNDEYIETKLGKVHYSKTGFHVVPYIKKE
1000472..1000663                   hypothetical protein; SE0991                                                         N/A                 MNLQYYLGKIVKLTLTNNKVLVGKVTGFDDKYDNFDGFNSIEIDTGSILYDITENKIKSIVLN
1000840..1001217                   PHAGE_Staphy_phiNM: hypothetical protein SAPPV1_gp42; SE0992; phage(gi118430766)     8e-25               MQTKKTNMLKLKLQFFAEEPGDNAQTSEGQEKQDTPEKVYSEEEFNQRLNSELQRRLKQKEDEKAEAVKEAQKLAKMNKDQQLQYENEKLTKQLEEYKVRDAKSQMKAEARLMLNKEGIDVTEEP
1001224..1001412                   PHAGE_Staphy_StB27: scaffold protein; SE0993; phage(gi431809709)                     1e-05               MLVTSNAEDTKKNVETFSNLLNKIVQSNVERALRQDSPVSTQSNKMTKDEESDYLVSGRKCL
complement(1001663..1002346)       PHAGE_Lactob_Lj965: putative superinfection immunity protein; SE0994; phage(gi41179219)     3e-23               MQQERQSWYQKSWFIILTLLFIFPLGLFLMWRYAHWKNWLKLTVSSVYIISLVLTLLFQVSLLNENKTNQIEHASTMKEKSNINNVKTTKNKNMEKSTQTDKQNSVNLKQNTKDQNNNANDEAASPTSEQNAAIAQAKSYANTLPISKKSLYKQLTSEYGEKYPADVAQYAVDHISVDYKMNALRLAKSYVKNINISNQASYDQLVSENGEGFTPEEAQYAINHLDR
complement(1002416..1003441)       hypothetical protein; SE0995                                                         N/A                 MISFENDYLEGAHEKVLNRLVETNRIQAAGYGFDDFSAQAADKIRQRIDCPDATIRFLVGGTQTNQVVINSMLDSYEGVISADTGHVAVHEGGAIEFSGHKVLTIPSQEGKITAQDVENYIETFESDFKKEHMVYPGMVYISHPTEYGTLYTKEELQSLSRVCRRHQIPLFMDGARLGYGLMSNQTNVTIEDVAKYCDVFYIGGTKIGALCGEAIVFTKQNEPKNFTTIIKHHGALLAKGRLTGVQFLELFTDDLYFDISRHAIKMAEKVKKGFIDKGYQVYFDSPTNQQFFILSNDKIEELKQKVKFAVWEKYDNQHRVVRFATSWATTEENVNQLLELI
1003755..1003952                   hypothetical protein; SE0996                                                         N/A                 MQQIKFKTLTEETLESLEKSVNSFLKSQEGNGYKLLNITIKQIEERAFPHNDEDFNAILTLVTEA
1004010..1005482                   PHAGE_Monkey_16: C19L; SE0997; phage(gi17974958)                                     2e-05               MNFGFLGTILTILLVVGFITNVVLAFVIIFLERDRRTASSTWAWLFVLFVLPVIGFILYLFLGRTVSKKKMEKNNGDELNAFEDLVQDQIDSFDKHNYGYINDQVIKHRDLIRMLLMKQDAFLTENNKIDLFTDGHKLYEKVLEDIYNAQDYIHLEYYTFELDGLGKRILDALETKLKEGLEVKLLYDDVGSKKVRLSKFKHFRALGGEVEAFFPSKVPLINFRMNNRNHRKIIIIDGQIGYVGGFNVGDDYLGLGKLGYWRDTHTRVQGEGIDALQLRFILDWNSQSHRPQFKFDQKYFPKKIGDKGNAAIQIASSGPAFDLHQIEYGYTKMIMSAKKSIYLQSPYFIPDQSYINALKMAANSGVEVNLMIPCKPDHPFVYWATFSNAADLLDSGVNIYTYQNGFIHSKILMIDDEISSIGSANMDFRSFELNFEVNAFIYDEDIAKQLRQAFEKDIEQSKLLTKEVYDKRPLSIKFKEGLAKLISPIL
1009443..1009455                   attR                                                                                 N/A                 AAATTTTCTTTAG