gi|57236892|ref|NC_003912.7| Campylobacter jejuni RM1221, complete genome. [asmbl_id: NC_003912].1777831, gc%: 30.31% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 195628..195640 attL N/A AATGGTTACATTA 206505..206687 PROPHAGE_Shigel_301: serine protease precurser; CJE0212; phage(gi56480227) 3e-05 MHKRMGELRNNPYESGVWLRTFGWGTSDEYNSGKYFEIQSGHDKLNEYSNFELYSGVRFL complement(207115..207315) hypothetical protein; CJE0213 N/A MGIVTSIRKYKNTLSKNVTILEGKKHFWDIKFKIKARVYPSFKQHLITFLGQSGHFGIFGIFYALD 207469..207564 hypothetical protein; CJE0214 N/A MFLNINLESLKLDFSSSYIKNLSNQKFLIAF 207610..208239 PHAGE_Staphy_12: cI-like repressor; CJE0215; phage(gi29028622) 8e-09 MQMQEVIEKLKDILASEGKRDLKTKDIAKELGINPDTFNSMKFRNSIPYPQILNFLNERNISINYFFYGVSPKDQLECENKYKILKLYKTNASLGGGGINDLIDCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKAFKNKSICVINTRDGLFIKQVLKQDDGVILHSLNPLYEDIFYKNGDFLLIGVVIGELSKM 208320..208640 hypothetical protein; CJE0216 N/A MKDIKNYTDKELKEKIIQDLESEFRILYKKLLKEKDYLARDNILELMTIYNMGINSYSIAKNLEMNEDKSLIQVPLFERYIIGRKFVVKYNDEKQRYELKSTFCEF 208650..208844 PHAGE_Lister_vB_LmoM_AG20: hypothetical protein; CJE0217; phage(gi472437265) 5e-12 MKYPNVYVKLVGEDGNAFSILARVSKALKKAGVSKEEISKFQKEAMSSDYNHLLNVVQDWVNTN complement(208876..208992) hypothetical protein; CJE0218 N/A MVANCVYKSLAKTFFDIYYYFTHLISFCFDKTRLALLG 209029..209211 hypothetical protein; CJE0219 N/A MSATKECMGEEPMFYAITHNNFGAILLLLKYGAILDKNYLEECNKDFSKEALKFLSSLLK complement(209239..210054) PHAGE_Clostr_phiSM101: putative modification methylase dpniia; CJE0220; phage(gi110804053) 5e-47 MKNNTDKFLKTSTLTKPTRTTLKAPFAWVGGKNYLAKEIIALMPEHKSYIEVFGGALSVFYQKSASKIEVINDINDELINLHLCIRNKPQSLANVLNSMIISRKIFHMLKNKEIKPRNDLERAAFYFYLISTSFGSSMGQFAMNKQRAPKRLCRDFSLHTKRLKNASIENKSFEYILKEYDYNEALFYLDPPYVGTENYYKNTGGFGLKEHELLCNLLKNIKGKFMLSYNDCELIRKLYKDFNFKELKVRYSLNNNVLKRKESKELLIMNF complement(210256..210744) PHAGE_Plankt_PaV_LD: G protein; CJE0221; phage(gi371496194) 9e-05 MSEYIEIKGLENFFKACDKLIDMDKHGQSIMAGAGESIRNSIIDSFKNERSIFNGKWQSLKPATIKQKIKDGKNKGILKRDGELSNALNWQSEPTKSGVEVFNNIQTKNGFKYGYVHQWGNRKRKIPQRAFLPIDNNKVLHPSIRSVIYKDTKDFIEKIVKK complement(210748..212964) PHAGE_Vibrio_VP882: phage-related tail protein; CJE0222; phage(gi126010872) 5e-48 MENAGSIGIGVILGLAIKNASAVGKVVKDFSNLEKIAAKTKLGINGLQKELNTLKLNANLRAELKAQRKGLQDEFLSLGNVIRGGIIGKGLGEAISFESAMADVRKVVNFDEGDDIKKMSADILKMSQTLPVTANELAAIAAAGGQIGLGSKDVREFTNLVTKMKVAFDMSAEDVGDSVAKIKNILGISLKDMEDLGDSINNLSDNSASKAREIIDVMKRTAAAGKQIGFTKEQIAALSSSFISLGKGPEVAGTAINSLYRVLATADNMGTKTESAFAKLGISGAFLKQASFDDPQKALDMFLQRISKLDQKEQMGVLVDIFGREFADDMATLVGGLDTYKEALKNAGDEAKKGSLQREFDTRAATTENSIILMKNAFNSLAVNLGSVFLPAISWVSAGISYLVNSITYITGLVPGLNGVLGGLIATFLLAKPAVLAYAIAKNYLKDCTILLKSALIKTRIHLLAFRNSCILSNITLKAKTVTTTIYTTSLKALSFVLGGLNKVFKAVAIGIRVLSMAMMSNPIGLILGGIAIVAGLIIANWDKVKSWFKSFIEWLKPVWEPIYNVIKAVFDKCALVFTSFKDIIMSVASPLAEFLNSIWQGVGDFFYSIFGSLFDWFASKLSWVGDMISSISGFIKDALDFVGLGDDEEVKISQSEQNKEKVFTTNTYKDELAETKSINHAPSFNNGNINISVNGTFNIATKDGNFNMQEFANTIQKSVFDALRKQEQNKINTTIYG 212985..213311 hypothetical protein; CJE0223 N/A MYFKIFTMKVLKFINDDIISHIALLLTTLIPAFYISYQSASDGFFNTMAIFIFSYFISIIITAILVMIMPPIALLLILPTWLIVISLDFILFAILKIYFLKNKTIKNS complement(213298..213396) hypothetical protein; CJE0224 N/A MHWGLNEVLDLSLDEFEEALAISKEFLKAKSF complement(213423..213662) hypothetical protein; CJE0225 N/A MKEKIIKLENGEELKMREPNVRVLKNATNKGEKEMEQTICMIAALTNKQESEIEDLNLKDFKALQDALKDFLVEAGVIA complement(213815..214324) PHAGE_Mannhe_phiMHaA1: tail tube protein FII; CJE0226; phage(gi109289961) 1e-04 MKRIIGEVIQEGNIYIDGQGYLGVVRNLKLPDIEQEMIETKGVLGANYSSGVLKPLEISFKLAVVDPVLYAAFFHTTFSEIKAPLLFRESVHKGGKNYGISAEFLGEFISISESDHESGKEVEAEIKMAVHFYMQRRNNIPIITYDHKNTILMINGVDMMSDVRSNLTL complement(214351..215544) PROPHAGE_Xylell_Temecula1: contractile tail sheath protein; CJE0227; phage(gi28198986) 6e-21 MAANYGVNFNISNGAASPIKVQSDTPIGIAGAIKGASKEMIYTKAGYESVDSFPIFAFSNVSKAKEFVNDLIKENNLQDFRLLDTLECINLQNVSNVIIISFFEESEESENTLTNIVNAIEAFKKAKHKTGFNPDLIIAPYYSHEAGVKAKLESVASSMNITAIVDLYATNVGEAINTMEAFSSKRLIAAWPQVQILNTQGKYAYVPQSPIIAGLIAHTDGDKEYGFSDSYSNRVMNGVTGTEYFIEFINGFDCDAERLRNAHISTCILSEGYRSWGGETSHEDTIWQDLARVRTFDRIALAGQKAAFKAIDKKASELYFIKISIEELLRDLKGAKVLIGYEVSWDEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDEWASDLIKTISADS complement(215555..216568) PHAGE_Campyl_CP21: putative tail fiber protein; CJE0228; phage(gi422935209) 1e-29 MKDYGISFIPNINQGSKEPSEPIVSDKLNAQKVNELIDKKLKLFKEELVNKEELKSLIQEILKDEGFQNTNIKISKTPPNYNTQAKVGEIWAVVESKKQLFICTANDNDFTSWVDLLGDGSNDIAPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFATPNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPIAGENQILGTIKTSGIYQETYHKIAHVFKKYNGGSDECCLWSSSGTREVSIELENTPMPNKLFARGNGYYGQTEITNVRVKKSIFIGEQEIQSEDFNVEKLEASADTYGDYAFLFEISKQDQIVMKKELNLNPKKTKNTKNVKK complement(216668..217039) PHAGE_Campyl_CPX: hypothetical protein; CJE0229; phage(gi371670957) 6e-09 MTKAELKRVCVKPYDKDRFEVIQDYEFALLSFKGIVPKGFKTDGASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRTDYRTADLALKEAMTLLGCSRLKIFVFYHSCNLYHAIKCLIKGK complement(217036..217542) PHAGE_Edward_MSW_3: putative tail assembly chaperone; CJE0230; phage(gi448261067) 2e-06 MKYFIDKNDNNQIYAYEDEVSDEQIKTGLTPISEEEFNALTSPPKSEEELLNEAKELKINEINAKKESVLNGGFSFKGKIYQSSNEDQLRINGAVTNALVNPNLIPYIDWIALDNTTTRFSVDEFKLFASSMAYFVQETIFKASALKEKARNAQSKEELDLIVWESEK complement(217552..218631) PHAGE_Clostr_phiMMP04: tail fiber; CJE0231; phage(gi414090463) 1e-26 MAKSEYYTILTKIGIAKFIAARASGNGINLKSFKLSSKVILPSEEMQSLEEIVYEANISSKSVDESNPNYVNLMCHVPSDVGGFEVNAVGIYDEAGDLLAVGNVPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDVIKVELNLKIDALTQKYDAEFKKVWDEFAKYLLENKFNTEIAKYVTLATNQTITGAKDFTKLPTSSIKATNDNQFVNLATLKENQLNLKDPELLALIGFNTYLDGTSLLKSHSMSNNVIYTNTTGGKTPIAIKIQQIDNVVNQASISIYINNSLIKKINAIQYTNSTGKYIPLTHYEGILKPNDTYKIELFNIVMDKPNIEATILNVQ complement(218631..219251) PHAGE_Salmon_RE_2010: tail protein I; CJE0232; phage(gi418489712) 3e-08 MNTLILNHHPKQSKAIDLSAKTRFEDLNLASITNLALNCDERLLPILANAYDVSIDGLNEKEARKLISKALLLDRYNGTTWAIKEALRAVFPTAVVKEWFNYGGKPYFFKVKVSTTNVSFDERTLNTLERLIYDFKNVRSVLEAIEIEIKSKNDSFNANAQISGETIEILPFQTTFLENEIKSTKNVFGIFMCEITRTNIDFKGVY complement(219248..220414) PROPHAGE_Xylell_Temecula1: phage-related baseplate assembly protein; CJE0233; phage(gi28198989) 7e-13 MSELLSANDSYFKQSFLKDIPYPQIIEELDYEKLLKAYEELFKSFLKDNVELLESDPFKAILEALAYREMIIRARINESIKATYLHYAKGSDLDNVVANGYLIQRLKGVKPTAKVEFELNTLLTYDVIIPKGAIFSNEKADLATLKEEVVIKKGQSKAQGILELNEFIQSKESKTEFLQTPLPFIAKIKQLEFFKGGASEESDEALRERAVMSVHRFSTAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRPLTDEVSVELAKKREFIVDAKLLLLELSRANEISEKINALQKDFDLSVDLALGFIYKCLHQDGVYKSEILSIKEKIINEEEQELKDLPLANIIIADDEFATLSFSLSYEKAVL complement(220411..220692) PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; CJE0234; phage(gi428782737) 2e-11 MVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDFKIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLSITLLFENYGDLTMELGK complement(220698..220889) hypothetical protein; CJE0235 N/A MKELFLLLFSLVFFMLFCMGAFYAFLNLNFFIKSIFIGFFIAFMFLGFSQMLENIFEFYKGLK complement(220898..221530) PHAGE_Mannhe_phiMHaA1: baseplate assembly protein V; CJE0236; phage(gi109289954) 1e-13 MNELGIICDIKDNKAKVAIGDMVTDFLSVFQSLANSYAVSFSPLRIGEQVLVIPVRGDLNSGVILRGLYQEKHRAKNTDENTFNIDFEDGTHLEYNSKSSTLKLDVVKNINIACVDKTTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTSGEGGASGTFSIKGNLNLIGNLQVSGNISDSKGDLTNHTHSCTCGATASPR complement(221530..221844) hypothetical protein; CJE0237 N/A MKLEDIFVYMVLMIVSFIAGLVGIVTKNKLSKALNLKGKFTLFLKGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLKIEQLVEKLINKKMEKL complement(221847..221969) hypothetical protein; CJE0238 N/A MKENNKMINQKSIAKDLLIALLFSTFALALLYLFEIFTRS complement(221956..222192) putative lipoprotein; CJE0239 N/A MRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKLPLKPLDKKDLESAKEISKYYLEVENIAKLCTGEKDERK complement(222201..222542) PHAGE_Helico_1961P: hypothetical protein; CJE0240; phage(gi422935793) 2e-07 MFSFILSRFLSPSKIAFFVLIALCGFLYLKNNALALENENLKLKALHFNNEINVFKDKLAQQNKAIDKLKLDLKPKETLKEVLKVDKVFIKDKSCESELKAYKELFNILGAKK complement(222553..222942) PHAGE_Entero_5: 43; CJE0241; phage(gi108862028) 3e-23 MKNNPYFKESEFKCKCGKCELPQNVPSDELIDILCEIREHYNAPVIINSGYRCKEHNAEVGGAPKSQHAIGSAADFVVKGVKTEEVHQYVLITYGERGLGIAIKHNFNDPYAGFVHLDTRGKKARWTYP complement(223009..223182) hypothetical protein; CJE0242 N/A MFWVSSNSPKYILTLKSFNSSKSSFSKLLSIFHPLKISGNFKMSSFFNQANYFFKEF 223091..223525 hypothetical protein; CJE0243 N/A MLKSFENELLELLKDFKVRMYLGEFEDTQNIASCINNLDASLLLDFEGESYKDLENKVGTWKLYILTHTKSKAPKHRIDAKHKLFDAIEAVDKVLLNAEPSNGFRIELKDLKKVYEGISDHGYLSIYARTLQSSFLPKDDFLRI 223527..224342 PHAGE_Haemop_SuMu: bacteriophage Mu I protein gp32; CJE0244; phage(gi418489085) 3e-13 MLFINKENLVEVSNDKPIKVAIKGEWKGHNNGRFKVDDKDLNSMIDNFNQKKIDLVIDYEHQSLKNEKAPAAGWIKELYLENDALMAKAEFNEEAKKYIANKQYRYLSPVFEFNSKDNKSGELVRAKLHSVALTNTPFIDELGELIANKNNIHQNKGEKMDEKIKELESQIIALKNENSSLALQNEALKKQNEESVKNLASSLVDNALNSGKIANSQKEWALMYACKDLEGFKSFLDTKNDQVQVPKNNVFANKNTAKTNEFDVVKMMLGD 224507..224872 hypothetical protein; CJE0245 N/A MPSKVTPKSLSNDPLIAMPKSLESFINKDLFSINAKIDLETNGSLALGTLLISEDFGESFKKCPNEDISAKENVKLAMLKDHALSSGIYGILLAGEINLKGVHVSAVKKAFMQNLIINTKE 224875..225852 PHAGE_Vibrio_VHML: ORF26; CJE0246; phage(gi27311193) 7e-11 MDLEQLLELFSSTKITEVINQTKASPRFVSDTFFKDKIPSLESTVRVEIIKGAGIVLNSISDNGEHSLENTKDAYILNIPLPRFALAKRISASEINSLRSLALQEAQAKSLSGALGVLVKEMKESFNTTLEYMANGALFGKILDGKGNVLFDFGSASKKAISVKKDGSVTLDSVCDAIDSAIIDEFGTSADYEVLCGNELFAAISNLALSEDLYKNHLASRDEKDKSLILYGTKYRRYSAKYKNTNGKSVEFLKGTEGMVVPKDNSNRIYYTRANHTDALGKAPSLMFVSKPEILPRGAGIEIVGEMRAMPVCTRPNGLIKLVLE 226028..226426 hypothetical protein; CJE0247 N/A MIDEKDLIKELSVHAIAELSDLNADGVCDKEVIDDAINDAQSYIASFIKIPKNPTPLLKDICVKLTIMELKRRNDFPKESLEEIREWANDLLLKMANKKIPTEINEDNFIPQNKFRAFKIKRKRMDLRRLNG 226419..227018 PHAGE_Burkho_KS10: hypothetical protein KS10_gp05; CJE0248; phage(gi198449267) 6e-05 MAKNLTSTTKPKMAKVGCGLQVGAESETPARKDKFTSSAKSQNNLKDLAKELYIAGFDIFKIAKILNRNEKTIRNYKAKDGDWDKQKANLLTSKIKDKESASLYESFTEQMFCAIENINTDEKMNAEKKTEAIARIGDSFSKMRKVARLEDPSSYRLNVAKKVVEIIISHLKNDKDCVAKLVSLLESGVIEKEILAMDI 227105..228688 PHAGE_Pseudo_JBD24: hypothetical protein; CJE0249; phage(gi448245076) 4e-95 MQRKDFLEWMDELKNELKTQFLHESHLDPTLKEERIKRASVDFDYFARTYFPHYFTIKGECGLHLHLNEVFTKIALKKESKGEKHAIAAPRAHGKSTYTSQLFPLWCLVFNYKSFIVEISDAVELMEGMLEAIKAELEDNPHLKLDFPEVVGIGKTWRVGEFVSNNGVKIKAFGSGKRLRGVRYGVKRPDLVILDDLENDTNVRSKDQRDKLEDWVDEAVLNLGSADGSLDVLYIGTILHNDSVLSRKLKLGFWNPKVFRSIEEFPQRLDLWDEYAMLYRNADFNTAHQFYLKNKVLMDKGAKVLWKEAKSLEDLMKLRAENLKAFNKEQLNNPRSENQIFSLDGINFYDDLPAINQYYMYIDPAGEKAKSDFTAITIIGKGAKGFYVAESIVKILKAQSIIKTIFNLQKIYKCRLIEIETNGGQFFLKKWLQEKSLESGVFLPLRGKNNSVSKFERIESLSLAFENEELFLHKSQTMLINQLLEFPEGKNDDAPDSLAGAFLLARTKSSIKRRKHHFNSVSRIRRF 228698..230068 PHAGE_Pseudo_B3: portal protein; CJE0250; phage(gi56692600) 3e-12 MKKEIKSKREVILKNNSLINTLINSSYLNVLKISENDQKMIFKDLSFTQAHQSRRSVILAKELQIVCENEKIKESFEYLFNPDLLSQILETYLYGLNVFEVNYKLKDGFYYPILKQRDFRNFGFNENDELVYNSNGCEEIVEDKKAIYGLFGSNFLFKNGDALLTKLYFPVKLKNASLKFWMEFLERFGSPWAVAKTDSDPDALASEIHQMLNGDSAVIDKEEELDLIQPKAKANYNEIIDYLDNQIRSVVLGANLSSQVSGGSLAAAESHNQIRKDLAAQDGQIVLFILNRAIKFFKEINHFKDELYVQFFSEAEPKSELCERDLKLFNMGFCFDEEYIKNTYNVEGELIRETLEKKDFKDLENDKKVFENKVKLESFEEDFIDKGLEQKEYLKVDESMSKFFQEQFESIVKDCKDFNEALNKLKENFSSLEQSEFEKHLFIALNNSSILGYLED 230070..231308 PHAGE_Pseudo_DMS3: putative virion morphogenesis protein; CJE0251; phage(gi119953653) 2e-21 MTGAKIGFFSEPTKAVDFLKNKKPELSFDYDELSYSTHKKVFTIAKLMDESLLKDMQDTLVNAIKNGDKFSTWSKIAEEKLKAKGWWGSKEVINPKTGEVKKTHFNSARLKKIFEENSRKAKAKAIYENQMKSTKPYFKYCTQKDSLVRDKHRAFDGIVLHKDDPFWDSHYPHVTMHDYGCRCYVLEVGESEVKGLKIPPSNAKESEFNGFNDEELLDELYKQKNTEVIQNFIKLDMLSAAAKKTKEVKSFTHQKELYTWQKSLDDMVDEVIIKDNQKYPINFIQVGKMDKSTKEFLEKLNKKDLEDLYFTLSKNNLLHASPKRKASYNQALSADEIKQIVKVLDEAKEVYWDNANNSLLYFFEDKKDASRINKIVITPDYKLKKFGKTNAIVTLGKVEAINKDNKTYIKIR 231434..231808 PHAGE_Ralsto_phiRSA1: bacteriophage gpU; CJE0252; phage(gi145708105) 5e-08 MVLALGEFEFKALNFDNLERSLEYNIQSQNRLNNHNALFASSKESEKIKIQGKTLPLKGDRNTYLDKLENMAKEQRSFILTGANGKYYGKFVILSLNENRSAFVDGSGFVAQSFSMDLERDFDE 231801..231992 tail protein X, putative; CJE0253 N/A MSKIYIAKNNERLDSIVYKHYGTLLYFNQVLLANPRLEPLLKTGDKVILPSIKIKESKEKALW 231986..232963 PHAGE_Entero_2: P2 gpD-like tail protein; CJE0254; phage(gi169936019) 3e-16 MVRKPKFKLIAKGEDITEKLSKNLINISYEDKEKAESDEISLSVFGLYSKPLFGDSLELWLGFEKLYKCGSFSVNVVSKNYTSNTTEVRASAINFSGKGSVNIKEKKTRSFENTTLFTIARKIANENNLKIKTSGEDQNIVSILQNNQSNLEFLYSICFDYGFICCVKENTLIITPKDGKIGDNAANITSKNENLPLFEIALKECISLEISESARNEYSAVIAEWQDINEAKIKSIKVGSGENIYKMQISQPKNDNEAFKKAQAKLNELQKGGLNGRCELIGREIRAGGKLKIKDINMDHYEFSIKSVSHSFNDQAYIISVEFES complement(232960..233244) DNA-binding protein, putative; CJE0255 N/A MLSNNEYFEYFIDFVKNNDKREILKEFGGANIYIPSYKTLLRDEELKQDFKTLIKQGISTKNASVECAKKYDLSLNAVYLITKELRENLEPSLF 233338..234009 extracellular deoxyribonuclease; CJE0256 N/A MKKIISVLILALSLLNAKSFEESKKELVKFYNDLGSSYWYDFYCQAPFKVNKKGKYISFEVIKSDLYAPRNEYTKKGKINQRIKRIEWEHIMPAQNFGKHLPCWKEGGRKACKNDPTFAKMEADKQNLVPAIGEINGDRSNFRYAEAPTNLKYTQYGNCKVYTDFKAKRFYPANYSKGWIARSYLYMSKTYNIRLSDQERKLMEAWDKQYPMDEKEKRIRALL complement(234001..234276) hypothetical protein; CJE0257 N/A MILEIHSYDAEFFLTLGIEKHSQIAFAAKRTSLEIMHNGITHQIKTDKDFGILLNVVCNIREKLDESFEEEDKSLVIDIDEIVAKVCKELE complement(234323..234772) PHAGE_Entero_Mu: hypothetical protein Mup16; CJE0258; phage(gi9633506) 1e-05 MNTQNTLKKHLIKIIHTLRKDANLSDDESYRWVLNQRYGKASSKDLSIDELRDFAITLGYDEKFLKKQNTKKARYFKKENTKSGRATKKQLNMIQAIWSKNAKNPTQWALREFINNIVKKRPLHLWYLSIEDANKVILGLKNLENNSTH complement(234769..235461) hypothetical protein; CJE0259 N/A MDNAKEALKELFGISEVQAVVIEKLYFKAKTPKDILGFKKYYDLTMLKKQFVGTSYEKLSLVCAFAELDLNLRYKNIESFLEWLFISFSNRFIFQTKKGDFSYSFVLRYYDGNIVYDELGKPVLKHVDCGDNLYFINANKELCDEQRKPLNVGEFYNKLVEYMFKNQDKIIFDNKIEISPVIKTQIPSQTKINKDYEQNYLEYKKNQNKLYNANIDKFTSKLEQILKAKK complement(235461..235730) hypothetical protein; CJE0260 N/A MKFNPPSKEDLIKAIDEFNAKNSCSIPYFIADSFINYYKQDDGRWLMANKKPLKCWKRALNSTWLPKLANKYKNKDKQKALASWLEEEF complement(235727..236689) hypothetical protein; CJE0261 N/A MNLDFLNEFKLKNKDLNEKLEFLIPDFLVKKAITIIYANGGSGKSYLSAAISKTLCKDTRVKSIVYVDMDNPLNVLNERGFGELILNESKFTYIHRSSLKTSAYELLEMIEGKGVAGSYEGVLFVLDSLRNFADIDNDTKMMSLMSLLMNLRECGATIMALHHSTKDGRAFKGSNHIRNSSDCMYFLQKVANLEQGFEVLLSVQKERAGIKDQAFFINTKTLNIKNTDLQNAKISDKEEAFIDKVLKLLNEKSLSTSEILSALDVSRSDNFSRNTLEKFKGVFWESELSGENGRTFVWKSLKADNKNSNDKELSLFGDEL complement(236798..237184) PHAGE_Campyl_CPX: hypothetical protein; CJE0262; phage(gi371670986) 4e-21 MKLQDFDFRVWDKHHKGCGNKDCKCQTKYVYGEEAKTRLSEFKEDCEIELFTGLYDKKGKKVYENDIVKVKSLYDYFLAKISIHKEGTFYFEGKNGDYIGSLIYLVEDEGYTIETIGNIHENPELLKC complement(237181..237453) PHAGE_Campyl_CPX: hypothetical protein; CJE0263; phage(gi371670991) 1e-14 MYVNVSIDASDLEDIDAHDLAELFEDLSTKEQEEFFGIIHKDIKPLERIRAILSNLSNDEALKLLKELNNEFKSDEEWQKTIKSINGGNK complement(237517..237696) hypothetical protein; CJE0264 N/A MRELSLATFKLLNSVFKTKTAHFNGFLELDFKNKPKLKKQSFKRKKKMTSKQKIRLKRI complement(237693..238178) PHAGE_Haemop_SuMu: host-nuclease inhibitor protein; CJE0265; phage(gi418489043) 3e-05 MQINNLEDVNLALKKVAELSVKIEKINGEVTLACNEIKEARAGEIKVLSDELKYIEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKLENLIKALKSYGLNDCITYKEELNKDAIAELEDSTLVKLGLKRVVKDNFRIEPKIESLEIEK complement(238285..238626) hypothetical protein; CJE0266 N/A MPLVYIASPYKGLAVQESRRKSLAISVAEQECLKIIRECEDFTPISPILQFSYLEENKHRDKALQMGRELLKACDYIYLSKHKDAKNSTGMQEELALAKKLGIKELVLELPLQ complement(238722..238907) hypothetical protein; CJE0267 N/A MTTMIKGEKADYSASLFEVKGAGIYFKKSGTFVDVLKGIYPDYIAQKILNFHLNKKLNKSA complement(238891..239094) hypothetical protein; CJE0268 N/A MTFEEIAKELGISLTRVHQIYKHAIKKLRSPKNKDKWLAIFETLDLIEQEKTKRNNLIQGVDHDNND complement(239097..240020) PHAGE_Haemop_SuMu: phage transposase; CJE0269; phage(gi418489040) 5e-27 MQLVELTKKFLSTQNISQNNLSDRLGINKSYMVGYMKKGSSYKYASKVESLLEKYIKSFVEEKSVKELQTPFIATKDAKAINVTIESAMSNREMGVIIGEAGTGKSRAIKEYATKNGTRVVLFEATTETSKRMLLVGLENKLNVCFKGSLDDKIRGIASELARTSKVLIIDESEHLPFRALECLRRIYDFSNTALILVGTRKLKNNLTGIGRNDYNEYGQLSSRIGAKWELKGLCYQNKEGLKNEDLKTLCSYFNIEDKKAIDLVFNLARGNFRKSEKLLKRACEFADGKAVELKHIEAAASFLMLG 239766..239778 attR N/A AATGGTTACATTA complement(240090..242162) PHAGE_Simian_1: reverse transcriptase/envelope protein; CJE0270; phage(gi9632567) 3e-06 MYFLETKEAAQAFNVSTGALRLAASRNSNKYEWLKVDNEKGGRGGKKLLFKISKDKLLTAFNQELITKNTLIYDEKMQKVKLSEIITTDNLKTINNSLKTSNLNLTESKINDDLAVLNLKFENLSDELKEDAKSKVKLLKQVEKYIEGGLTLKRALFLCNVEWRNYSNWRSDYKKYGILGLVDTRGLHRKDKTKLSAWMQEYALREYRTFGAGGFNFTELWWQIHKEAATKENYDFIGFDLGEVKPLFSVKTLQNFIKNYYKDKPLEHCIITQGLDRAKSKFLPAQGNQRELYDMKNMCWQIDSSPADIIVRDDETLEPFRPHILSVVDVFSGMGVATLVSKSNSLSLTRLLWKAIDKFGKPDMIKGDNGKDYLSKDFQSLLDGLNITYDAAIAYAGEQKALVERRFGTLQHAGISKMHGHIGNNLAKREMIEQKTPKKDRRAKDEYGFAKKTNQKLLLTFSEACEFLEAEVIKWNMSKVRRKKGIKTPLELWNSCDRAIVKISYEEFLFNAGNKELRVVGKKGINFESRVYKSALMPSVGTKVKCVQNIDNIKELFIYDLSGNFLCLALDESIAKLSKESYKMLKKGYESEVKAIKEVLKKDEIAVFTKLNIKQDLQDLQSAFENSLVEAKEVHQKSLAKETLKTQRELEEIKNNANADELILNAKKEINNDESEFDMEAFVEKKYFAG complement(242162..242362) hypothetical protein; CJE0271 N/A MIKAYFENNAINVKAFARTHNISYDILHRIIKGEITGERNTKGSTKAVFKKLLELGIINELPQGLK 242507..243139 PHAGE_Salmon_ST64B: regulatory protein; CJE0272; phage(gi23505482) 1e-11 MTANDFKQIREKLGLTQEQLGNKLNLTRQQIINIEKGKTPISKKYFDNISKLSKKFYIDKEENALNKDRNKQEINFYSIPKLNISASAGGGNELIGLEEYETGEMLELSKAFFKTTPKNVKAIKVDGYSMIPMLLPDSWVIFEEIHEYQGDGLYILNFDNQLMVKLLQLDPISKVLDIISVNKDYKSYSLDLKDSQVEIIIQGKVLRSII #### region 2 #### 1335616..1335628 attL N/A TTTTATCTTTTAA 1335926..1337101 PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; CJE1418; phage(gi16130540) 4e-32 MAKINKLTDSFLKSIKCESDKKFIKFADPSLKGLYVFIYPSGKKLFKIRQANDTYIKIGEYPLLSLAELREIALNAFKLKAKGQNIKNAKRLKFGDIYDEVLEKCKADGLSLKEIQRGLKYKNGVFKNFKDVDIESIKRSHVIETLKTIEHQIPTLIKAKGWINKIFKYALQLEIVENNPVTSIDNSIVFKKASKVIHQPTLLENDKIKEYILALKNSDLKKTHKNLMLFNLLTAQRPGNVIKATWDEIDLKNAIWTIKAEKMKMRKEHIITLNSQALKILKEQKKMKVNDYIFAGSSKNGCNSENITCNINKRLGYKGIQSAHGFRAMFRSLANEHQLDHGVSMDIAEQCLAHEQKNAILKAYNRSENIELKRKLMQWWGDYIEKLAGDF complement(1337098..1337304) DNA binding protein, putative; CJE1419 N/A MAKFGKIEKLLSTKEVAEYLGFTPLKIRKMRMRVNQNKFNFPKGIKIGSTFKYEKAEIDKWLQTCKVI complement(1337306..1337659) hypothetical protein; CJE1420 N/A MKEFKEYIKAKIALEKELENTQEMLKQTIKEMLLLRNDNAFNQNANDEMLKAINKNWKITASLESLSDTLEIKVLEQSTSYNRFCFGDVLILISNFLSYEEQKAIIAKLGFDLEKGV complement(1337677..1338432) PHAGE_Lactoc_Tuc2009: putative methylase; CJE1421; phage(gi13487817) 4e-98 MFHPQLYNDHFQNFKRYNIPKAQLVIADIPYNLGNNAYASSPEWYINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSKMLIKEPKECGKSPCMIVFCSFEQQTMLIEVAKKYGFNHYINLVFRKQSSSQVLKANMKIVGNCEYALILYREKLPKFNNDGKMIYNCMDWQKDEGIPKVHPTQKPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAATNLNRKAYGFEIKKDFFKSANEIMFKHIERSLFA complement(1338410..1338676) emm-like protein; CJE1422 N/A MKKNTNQQLEQLKELNQGELNQEIEVLTKRALAIHRSIQRVKDERSILNQNIKDYQSEFNEIMEKIAFLKEPNLFNQKGSDDVSPTAL complement(1338660..1339031) hypothetical protein; CJE1423 N/A MNITRELEAYDLAKLVLNNDLKYFFKDAKIVGENKERRLCFYFSDSFVLALFEKEKENILQRLREEYKKKLEFYKRIDLVFYSIAAKGINELKARSKEEQEVLERGLLKLENIIKRIKNEKKY complement(1339032..1339256) hypothetical protein; CJE1424 N/A MKVNFIFKGTIKCSKCNLEFVPNSKFFKGLDEIIGDVKSVSLDGFCPECDNKLKATFEVEKITRELSKTYTMRC complement(1339265..1339759) hypothetical protein; CJE1425 N/A MWKILSKMIKRFKAYSVDIACDFDDDLAVSKPREFKHQERFSKLKIFGDFHTYKTSMYINNPQSKYYKLERILLYDKYEKQKHYHKENIKREFVRWKRLELTLKIKDKFLDRIENDINDALDLMQDYLRMIGIWHFNMRVILEQTKYLNNPRWAKTFKPYALAS complement(1339963..1340277) hypothetical protein; CJE1426 N/A MSFKPIQKDNDAFKKAQRAKVIESLAMRGYALVKISSNGFLMKKGFEKDILCKQIIAQDTTASVSLSTKKPFTNTLKDGGFLKKCEAQQEIKALMNLQKTNSKA complement(1340356..1340676) hypothetical protein; CJE1427 N/A MSNKPYLENEIKALKYQLLIEKQKHKKTKEKVFKLKNIQGEKYEKLKAEFAKNQLFVFRDDELFLWVESLMRELKTKILCTNDELSKKACDILVFKLEKRRKNFNY complement(1340669..1340773) hypothetical protein; CJE1428 N/A MILEIIVLVLATLLCVLSAKVYRLEKELKELKNE complement(1341064..1341300) hypothetical protein; CJE1429 N/A MTSEELKQFCKEQGLTYKELAELIGFGEGAVKNAISTEKISFQMAHAINMLKKIFELEAKLEKAEAIKKDFKAWINEN complement(1341314..1342081) RloG protein, putative; CJE1430 N/A MTEEKENIVNFKIKIIHEENIELGIMANSLLSFQKLMDSFISKEHGITQSKIFLEKVETGSDIYSLVFEIAGEVLPIIAPIQALNEFIELIISFKNIKSKSIEEIEENPHFTKYNANNLKNIFAPVTINQNTFFINHKGEELLRINSDEAELIYENANYICEKKEIEYQKIHENALITMYKTTNKIDNKTKHKAKCDALSPYAVDVSFSDEKIAEEVLKNPYGFNFLVDLEYYKNDKNKIILYRIFNIKDKISLE complement(1342098..1342247) hypothetical protein; CJE1431 N/A MFVRKKKRGNIMQSNKTLGEKLKDSIDLADKEAIKQSVGFVFSLANKIF complement(1342219..1342347) hypothetical protein; CJE1432 N/A MCGLKFYDNLESPFENLHEQILLINKNKNVKVYFVCEEKEKR complement(1342415..1342678) hypothetical protein; CJE1433 N/A MDKNLKKITELKIKCKNCDTKIITKIGNVIKTCPQCGIKFIDENLGYNLFEILTELFKSVSKNKNAEFYFVCKKECDGTRNRQDKKV complement(1342735..1343022) PHAGE_Campyl_CPX: hypothetical protein; CJE1434; phage(gi371670989) 7e-08 MPSDRVEIELFTGFYDKKGNKIYEGDILYSFEGCSEDEAFKYKVVFKEGAFYLVECGDDGEEWDEDLLSEFCLEELEIVGNIHENAELLNENKPS complement(1343075..1343806) PHAGE_Clostr_phiC2: putative antirepressor; CJE1435; phage(gi134287384) 4e-25 MNLELFKKDENKEISLTSLEIAELTGKEHFHVIRDIETYLEKVVEGGISKFGDTYQNTQNKQSYKYYRLPKREVLILVSGYSVELRAKIIDRLEYLENELKKQSYKPLSLKESLQMQLELLEKNEKLQVENQSLKNEAEQNAPLIHFANRIQNTNDAILIRDYAKILHEKNNLEIGEKRLFKILREKGFLMSDNKPYQKYIEQGLFKVSETTVSTINGDRLVSTTKITGKGQIAILKAILKAS complement(1344237..1344521) hypothetical protein; CJE1436 N/A MKQAIKQKLGVSSITEAGLKLNLAHNVLNSWLSNNLTNAKVEIALLKLGLREDERLIKRIEKLKSEYKKNEIRKQAYEKYMREIKVLLEEIEAA 1344501..1344734 hypothetical protein; CJE1437 N/A MLYRLFHFETFMLIIVFSKSPSLTASMLISSFVCKKLSPFSKTSSLKLKHFLSSSFSSVFLKLKTSKIDLASIIFYP complement(1344518..1344721) hypothetical protein; CJE1438 N/A MIEARSILDVLSFRKTEEKEELRKCFNFSDEVFEKGLNFLHTNDEISIEAVSDGLFEKTIISIKVSK 1344926..1345579 hypothetical protein; CJE1439 N/A MSENKENISFENYEKNLKLQLESKRKDLDIQLTSIIPGQFQTIKLYMWLCTFIIAGDITILNNYIKTTHTDLFTIILFSVSIIFLGYCAFFSLLALKINNTIAFPQDQYGEMSKLNSDNLEHTNGINAMISSILDAFDKNNKIINNMSKDIGKIYVFLVIGASISFFAIITSGAQIVKGEIIMSDNKEKVIKPTPQTGTTTPIIPKTRGDKPEQEKK 1345814..1346476 PHAGE_Pseudo_MP22: c repressor; CJE1440; phage(gi157834973) 2e-06 MENYYELVEELKTFFNVKSLEEVAERLGYKKNNANNWRNNKQLSAQALKKYYELKKANNSVSIHHHKDTITIRYFPDICASAGFGNANENENFQLINIDKAFLTDVLGVPYKTQYDMIKIYGESMEPFIQNGSFIIIDTTKNSLEKIRNADVVIFRDNDNELFCKRILKNAFDDDIVISSDNFNFGDKKIKKSALKNYVFIGVVVCSCNAKIFLNQIERV 1346482..1347135 PHAGE_Entero_vB_KleM_RaK2: putative nuclease; CJE1441; phage(gi422937180) 6e-12 MKKLIILSLLSTLAFADYTQYKPSEDFAKYFTKQNCSQVLDKFYYINCYDYSLKGTKAVAYRLEADNLKGEQIKKRPRFEDDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGSLEVLNLVNYDNNPQRIKNNIAIPSSYTKILKGDNFKECYQVPNHDVENENLRIYKVKCDNF 1347152..1347433 hypothetical protein; CJE1442 N/A MEIAGLVYFIFAVVCAFELSYDAKQRNMSSLWWGIVGFFFGIFGCILYLAVKKPYRREQKISKMRDLEFLRGLKEKRCISEAEYEKYKAEVLE complement(1347447..1347644) hypothetical protein; CJE1443 N/A MQTQQVVTKIEIQKVKIPQELLTLSPLEKPIAKNELDILNAYSMLFYKYKQCEIQIRKIKELNEE complement(1347562..1347981) hypothetical protein; CJE1444 N/A MINLLFGNAKLYIALALMAILTGYFYLRLDSTQAKLEKSQSDLALALKINENNQEKLKELNQIHKTELKALNEANNQKNQVQERVQYVKEYIYKSNENNITKLFNDVVDRLWDANSTSSNQNRNSKSKNSARTTNIKSS complement(1348210..1348671) PHAGE_Campyl_CPX: hypothetical protein; CJE1445; phage(gi371670943) 2e-10 MKITINRRYTGKTCVIGKFKVLDDDDKILFECFSLEEDKEGLESGKDLRIPEGNYNLKRHSPSRFENTLRSITKKDDDTMINVYNDDVPSSRAILIHWGNTDKDTQGCILLGLTKDNNNESVGQSRQACKEFYDLMHGKNLEDIKLEITNELA complement(1348671..1348778) hypothetical protein; CJE1446 N/A MIKLPMVIMLFYLNLKKKNEFKSKNKIQKIKRKEL complement(1348720..1350003) PHAGE_Campyl_CPX: hypothetical protein; CJE1447; phage(gi371671054) 2e-35 MSVDLREIAIKTEEINKDFSEALEILKELFKNGVKPSDESIKNAINEVLTSFNFIKQSELKEKLEALLEELGINANINEESLKEVVLKVVLENQESLKGDKGDPFTYEDFTEEQLKNLKGQDGAKGADGKSAYELWLENEENTGKSQDEFLESLKAQTPTKEEIKPIIEEMLEDMKLNLGINGIKVSNSIPTPKTKANVNDLIITYNENVKQLWLCVASDDKYTSWINLLGNENITAQELIIISFDTNLNSGQYGGCLSDLRFGFENSLASTTQIIKGLNEGSFLITKDGMGLKSKNYTEVSVLSKPSKNQIEGNIKTSGIYNDPAWHNITNALKKYDGNANECCLWASNIKNSVSIELFTNEIPMSLFYRQAGYYGNVNLSNIKMQKALRVQNEIIVERSFIGIKKEIDKTTYGDNAFLFEFEEEK complement(1350000..1350374) PHAGE_Campyl_CPX: hypothetical protein; CJE1448; phage(gi371670957) 5e-08 MTKTELKRVCVKPYDKDRFEVIQDYEFILPNYKGIVPQGFKTDGASIPRLFWSLFPPFKSEYFSACVVHDFLCEKAKSRKDYKLADLVLKEAMQALEINKFKIFVFYCSCNLFHQIKCLIKGIR complement(1350367..1350750) hypothetical protein; CJE1449 N/A MSTENIIKEGAILGSLSGSALLGLMVFVLAGIAWHLYKTLHKEAGERTKELISETKNTNVLIREQIAVSRASSDSLVKFIETHCSKTNDKLEAIETDLMRMDERLVKLTQIRNDELRSIFKKKENND complement(1350747..1351382) PHAGE_Campyl_CPX: hypothetical protein; CJE1450; phage(gi371670964) 2e-13 MFYDLKNKSLKYDDIFLKDVKIQNEEGEIDAQDTYFLSACDDKLLKELGFAKVKEEEIPSFNEKIEELRQIQTYDEENNLYIISYEIKEKALEELKELKLEELKAIKEEKLLFMPFKNTIFQIDTEAKINISGKVSEIMLANLNNTPLENIAWIDKDNKIITFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATSLEELNLIAWESEK complement(1351395..1351745) hypothetical protein; CJE1451 N/A MIYKQAVVLPSNINNKEVVMLGEVWTTGNMSNKTSANTLHITWNNFNSSVELHALSKYYTANAKIKVEKKFNFGNINNLQIMLSSWQSGSANASAGWNLNDGDRLNPRANLTLYWN complement(1351846..1353411) PHAGE_Human__8: LANA; CJE1452; phage(gi139472804) 4e-05 MLDNSKIRSTELYATLSQATKDVTAIREWLYASKDRIDEHILENLNAFDEKVKEALQNYENLSDEKLNMLKELYKKVVYPFDYVSDEEPTMPNVNETWFKTDEAKIFKFIKNPQITFLQKERPKERKINDIWFKPMDDVNLQVGEFYLCEKVLKNEAWINPSLPENLEPAFNQEEAPQNATLGDIWKKGDEYLVYIKTTSGNSWTSPENPSEYTPTYESEEEPSEAKLGEIWKKGNEYLIYARVTNDTAWILKSDLGLDAFIWFNEEKENINFILSLIGDLKKEDEKEETSKNEIKDLEQNLSNKQEELENIKKQIEEALAKDPPQNVDNLNEKKTQLEQEITKMQEDLNHKQNELEQIQKDKSLVSQKMLSDALKEKVGLKGDETLNGNKTLNGDNIFNGTNTFNQALTSRADPTNDNHLTRKWYVDYGGGIKNLGTTGSINLDLRQAQHFILTANAGTSIGIANFGGVGKSGTITINNCQNVVAFNAPFKFRIAQSGFSGTETFAYFCIASNNVRLVRT complement(1353404..1354036) hypothetical protein; CJE1453 N/A MNKISFINTLPKAPDMANPVDFDKDANNFVNALVPFSKELNDFIKDINILSASLIELNSNMISYTNLALEQIDSKTNINILKIENFCKDFQNVLEQKAKERLKEFTDECLTIVENKGYEMIERLNDNGVGADYIAISQSLTHSLSLERFIMERGFIKLRKEEALNLDDVNLSLEEQRRDINLAQKALENITNILSSQNEINLTLKGENNA complement(1354033..1354350) phage head-tail adaptor, putative; CJE1454 N/A MKANGFKHRVKIYKKEQSKNEFLESDFTQDLLFKEVYASCKNLSADVKELNSGLSLVATHEFELRFLELDFSYFLVFRDEKYEIVSLEDESQNKKFLKIKARKFQ complement(1354363..1354677) hypothetical protein; CJE1455 N/A MNEFETRTNRILALNDYEVEFFNERVILAPFNALKNANFKAEFKTNGGVLYAIGCGNMIVNLGFEELPQDIKLWLKNYVLMAFDGVSMPKISSALITRYKIAYF 1354760..1355032 hypothetical protein; CJE1456 N/A MSSFLLSFNAFNLIFYLFYLLFRFVFVVFLAFLDLLVAFYLYLIFHQYFVFVLLVPRFPQCLFLRALRLHYLQVKPHHLFYKKYYRLNNT complement(1354797..1355048) hypothetical protein; CJE1457 N/A MKKVVFKCCLSGNIFYKKGDEVLLEDSEALRLLEKGIVEIVEQEEQKQNTDEKSNTDKKPQEDQEMQEKPQKQNEKEDKKGKK complement(1355059..1356225) PHAGE_Entero_SfV: capsid; CJE1458; phage(gi19548995) 7e-30 MQKLRQEIGNLHEQMVALSNKAKNEQRSFSAEENTKYEALMQDFESKRKELSRAEAELEREKYLNEVVSPVLGQNPKGEDEDLNEENHMRSFVNYLRNGSIDNILKRNVLNESTAEQGGILVPTTLQSKIREKLNDLSVIRKIATVQKSSSNQIIPVFDEMGEFSWLGEQESFTEVSAKFSSLSIGAHKLGGIIKISEELLSDNIANLESFIVRKAAEKISKTEELSFINGDGNKKPTGLKNAKKAFTLASNQGITSNDIIDAFFSLDSAYRKNATWLVGDEFMKAIYKLTDNDNRPLWLPALSANGYDTILGKKVVYCSGVDGFGASKVPAFFGDFSFYEIWDRSSMSFTRLNELYSQNDLIGIKVRLRLDAKLMDNSAVCKIVCPA 1370041..1370053 attR N/A TTTTATCTTTTAA