gi|18450286|ref|NC_003383.1|  Listeria innocua Clip11262 plasmid pLI100, complete sequence. [asmbl_id: NC_003383].81905, gc%: 35.52%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(14724..15206)           PROPHAGE_Brucel_1330: transposase, putative; pli0020; phage(gi23502708)              8e-30               MSHFKGKQFKQDIIMVAVGYYLRYNLSYRDVSEILNERGIKVCHTTVYRWVQEYGSIIYCLWKKRNKSASDSWRMDETYIKVKGKWHYLYRAIDSTGLTLDIWLRKNRDKQAAYAFFKRLIKQFGEPRVFVTDKAPSLSSAFNRLKSEGLFSVLLQSSKK
complement(15481..20190)           PHAGE_Africa_virus: helicase; pli0021; phage(gi9628148)                              2e-17               MTKQTFDDLINQINTVSKDVQRERGTLFEKLTLAYLKNEPTYKALYQNVWLLSEVPESYGIPKKDTGVDLVAEQKNGDLVAIQAKFYTNKVGKSEINSFVAELGKSYYQRGLIVSTMDDWNSNARETIDQNEKGIEIIGLSDLRNSQIDWSQFNFERPENVVVKKPKKLREYQQTAKDNALSHFKENERGQLIMAPGTGKTFTSLKISEALAKDKAGPFKVLYLVPSIQLLTQTLRGWNNDTELTITSMAVTSDRDASRGTDGTEDIKASDIGYPATTSSKKILQNWHDFESLPKPTDMLVVFSTYQSIEVIGEAQKEGFPEFDFIISDEAHRTTGAHEATKEASAFSKVHSNTNVKGLKRMYQTATPKIYGESAKKNAKDKSILLSSMDDESKYGEVFFRMGFGQAVSRDILTDYKVMVLAVDEAAIQKDMQRTLADPENGLNIDDVGRIVGIWNGMMRRNGYKNPIKNSPYDGAPLERAIAFTRTIEESKKVSGQFEEVVNEYISEAIEDESIHLSMRHADGQMNALQKGEILDWLANPNKPANEARIVSNVRFLTEGIDIPTLDAVIFLSPKKSQVDIVQAVGRIMRKAEGKDYGYIILPIVIPTGEKPETILDNNKNYETVWQVINALRSVDERFEAMIDKLNMAKPKQLKVIGVGSAPDQGNDQDKTIENSPVQTELEFEWDKFEGAIFGKIVQKVGDRKYLENWSKDVAKIAERQINWIKNKLSDKKDPISLEFKKFVSSLQHNINESIDEKQAAEMLSQHLITKPIFEALFAEYSFVNQNPVSQAMESIVSELEKAGFAKEQENLEPLYESVRMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERLGIVFTPIEVVDFIVHSVDDVLKQHFGKSLASEGVHVLDPFTGTGTFIVRTLTYLKEQMDAGEISLADITRKFTQELHANEIVLLSYYIAAINIEATFDEINGDEEGYVPFEGIVLTDTFESTETEDTLDDDYFGTNDERLKRQQSIPITVIMGNPPYSAKQKNEDGNQIRTTYEKLDASLQNSWVETSTATNKNNLFDSYIRAMRWSSDRISDNGVIGFITNNSFIDGNAMDGMRQSLLEEFSDIYVLNLKGGIRGKTKDQSVLEGGNIFDIMTGVTIIMLIKKSDYTGKGRIHYLDIGNNLDKYQKLEKLKNWKSLNGATSEFQNIIPNEKGDWINQRNSNFDELISLGNKKTQNALFIDYTGGITTGRDDWSWNFSQSQVEITMKTSIDYYNQYLGDTNIYKEDVSDISWTRSLKQRYERREPQSWQGDRIYLGMYRPFTKKHVYYAQAWIDRQYQMSKVLPVSTSSNLMISLSNKTGGKQFSTLILDVLPDRNIFAGGSQNLPKYLYQNNNNGGLFDSDEKYSAIRPEVLKRLSNLSEEDAMYYIYGVFHSVQYGEKYYEDLAKSFPKIPNVKHKEKYIKIGKELADLHLNYENQPIWEGIDVQISELDYRVKKMKHPKKGVLDTIIYNESITIKNIPEKAYEYVVNGRPAIEWIIDQYQVKTDKKSGITDDPNEFSDDPKYILNLLLSVITVSMRTLELIDELPEFEIQE
complement(20187..20732)           PHAGE_Strept_MM1: putative minor tail protein; pli0022; phage(gi15088786)            3e-05               MSEKLKTIKELADEIGVSKQAVWQKIKKESSIDLRQLTSKKGNTVYVDVDGQKVIKSAFFNKTSTKKRQQKLFVDDNVNNSVDDNPEGNEEILFLRNLVSELQSEKKDLHKLLDQQQRLALQDKKLLEEYKEEIKELKSLMVPVRKDDKDPMVRKSKDIDNTKEELHTKNKKWWHFGRNVK
complement(20732..21892)           PHAGE_Sodali_phiSG1: putative replication protein; pli0023; phage(gi89886026)        7e-05               MTSIPKNEQNQKQVQILNELSKRKVVEHNSLITSIACIAKMDKTPLKMFELAVSCIDTEEPPKDHTVYLSKEELFAFFKVSDNDKHSRFKQAVENMQKQAFFKIKEKKEHGFEFENIVPIPYVKWTDYHDEVTIRFSPEIMPYLINLKKNFTQHALSDISELNSKHSIILYRWLSMNYNQYEHYSYKGGRREEQVEAYRNPSISIRELREMTDIVNEYKLFADLEKWILKKPLEEINDHTSFTVTYDKVKKGRSIDSIVFHITKKRRADDNSYKLEDKVYQEDKARKAETEDMLTVQALKSPYTKLLMEHFLLSYLDLTDTKILSGLQAHVYPLYDELKDLRGLNGVKDHLSYVSSKREEYSKHNIAKYLKKAIEQYLSTVKRQDL
complement(22150..22830)           PROPHAGE_Brucel_1330: transposase, putative; pli0024; phage(gi23502708)              2e-40               MSHFKGKQFKQDIIMVAVGYYLRYNLSYRDVSEILNERGIKVCHTTVYRWVQEYGSIIYCLWKKRNKSASDSWRMDETYIKVKGKWHYLYRAIDSTGLTLDIWLRKNRDKQAAYAFFKRLIKQFGEPRVFVTDKAPSLSSAFNRLKSEGLFSNTEHRTSKYLNNIIEQDHRPIKKRHKLYQSIRTASSTIKGIETIHALYKTSQRDFSLFGFSVIHEINNLMGVPA
complement(23026..23319)           PHAGE_Lactob_phiAT3: putative transposase A; pli0025; phage(gi48697273)              1e-10               MTKARKPTRSFDEDFKKSIVKLYESGKSQNALAKEYGIALSSIARWVKQFSEVKIDDDTILTAQQVKKLQKRNAQLEEENLILKKAIAIFTPHSNND
23377..23652                       hypothetical protein; pli0026                                                        N/A                 MSTFLVYIQIKNYENQANNLIEVQKQTQNLLDQQQRLALQDKKLLEEYKAEIKELKSLTTQSTPATLSKDVNQPKDIEIDKKKRRWWPFGK
23688..26693                       PHAGE_Cafete_BV_PW1: putative superfamily II helicase; pli0027; phage(gi310831061)     6e-07               MKNFNNIDERVVDDLKKELKAQSKLKIAAASFSIYAYEELKKELEKVDQIQFLFTSDLFTKEKAPKEKREFFIPRLNRESQLYGNEFELRMRNELSQKAIAKEAAEWIRQKVTFKSNISGQRSDNFMVVENKGNINVYAPFDEFTTAEIGTTKGEKLFYNISKFENENTQQFLNAFEQVWHNQDYVDEVTNTVLDNITAAYQENAPEFIYYIALYNLFGEFLSDLDQDYIPDERTGFKDSKIWSLLYDFQKDAVLGSISKLEKHNGVILADSVGLGKTFSAIGVIKYYESRNKNVLVLVPKRLKDNWNNYKNNYKNNPLAEDRLRYDVLFHTDMDRERGESNGIDLGKINWGNYDLVVIDESHNFRNGEGTTHKKEEGVENRYQKLMRKIIKLGVKTKVLMLSATPVNTDFSDLRNQLMLASEGDSSNLTKTLTTKKTVTEIFGQAQRAFKDWSSLETENRTTEYLLDMLDFDFFELLDSVTISRSRKHIEKYYDQSDIGKFPKRFAPINESPKLTDLDITYNDLFQFIDLLNLEVYTPLKYVYPSKIEKYTEQATAGASSWANREKGRNQLMITNLLKRAESSIHAFKLTSERILENISLKLQVIEEYKQSKNGIVKSDSDDFEDDVFTVGQDLKIDIADMDYQSWEKQLVADKYVFTELLDVVNRIIPEHDTKMATLQEIILKKIENPINKGNKKVIIFTAFSDTADYLYKYLSNQLIQKDGVHTALISGTRTESTIPGRKNDFNELLTLFSPKSKNRDALGLDGEIDVVIATDVISEGQNLQDADYLINYDIHWNPVRIIQRFGRIDRIGSTNDNIQMVNFWPDISLDEYINLKARVENRAKLVAISSTGEDTIDNTDPDMEYRKKQLETLQNEVVDLEDMSSGVNIMDLGLNEFQLDLQKLREKYGDYEAKPYGIHAITKADSNHPAGVIFVLRNRNNAMNIDKQNRLHPFYLVYIAENGKIISNHFNPKKILDDMRYLSSEKSVPIENLVGSVAKF
complement(26727..27407)           PROPHAGE_Brucel_1330: transposase, putative; pli0028; phage(gi23502708)              6e-37               MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
complement(27445..28512)           PHAGE_Campyl_NCTC12673: possible methylase; pli0029; phage(gi332672404)              3e-22               MSDRPEKINLSDVHSRQVDTDLLNELRDLFVKAEEQKERYDFTWNGKAKAYFEAAAPTTKTLRAQPEESVNFEGSENLFITGDNLEALKLLQESYLGKIDMIYIDPPYNTGKDFVYQDNFKKTKKENDLSEGILDEEGDRLVKNEKSNGRYHSDWLTMIYPRLKLARNLLSDSGIIFVSIDENEIANLELLLTEIFGENNLAGTIVWDKRNPKGDSKGVSMQHEYIVAAAKNINIFSEFKEFKRPKKNAEIILNKSKEIFKKINDKFTLSDANEEYRKWINSKKDLSGGEKAYSKLDEKGNVYREVSMAAPDKPEKRSHRPLTHPLTGKQTSVPAKGWRYIDKTVLLQSFKSTIK
complement(28515..29072)           hypothetical protein; pli0030                                                        N/A                 MIIEIPKQAVVNRIVPKDRFNFDDATKIERIRWLGKLGPTTINLPAKKIQEIEIFSVDMIDFDLSVIKEIVSKIPQEILFIINDEILIMYYQGYCISKRVENHLQIKGLSIDEVRDNFIRQLLDLKDISKPLKQQVANIKIINELEFEIDRINTQIKRSIQTNKKQALARERYTIEQNLAKLRGE
complement(29073..29246)           hypothetical protein; pli0031                                                        N/A                 MSKYSNLLNQAIDSMISVKEEKDIDSLFTTGGTTALENDINGLNDFELIDFLVVRGE
29365..30045                       PROPHAGE_Brucel_1330: transposase, putative; pli0032; phage(gi23502708)              6e-37               MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA