gi|17233403|ref|NC_003277.1|  Salmonella typhimurium LT2 plasmid pSLT, complete sequence. [asmbl_id: NC_003277].93939, gc%: 53.13%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
26173..26184                       attL                                                                                 N/A                 ATATCCCCGCCC
32929..33966                       PROPHAGE_Escher_EDL933: putative transposase; PSLT042; phage(gi15803522)             8e-98               MPIIAAIPDEERQLMRKEAQQTHDKNHARRLIAMLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLPLLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIKDPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKHYLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVERWLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLFPGNQQGLAKVER
complement(34155..35180)           PHAGE_Pseudo_B3: putative transposase B subunit; PSLT043; phage(gi56692579)          4e-06               MKYSPASETIFVADNQERTMRVEVMEHYGLTQSIEQAGYYETAHHKQLMKDIKGAIREGRLIAVCGVVGSGKTVTLRRLQQQLLDENKIIVARSLSVDKQSVRLATLINALFYDLAQDKQVQIHKQGERRERELQELVKKGKRPVALFVDEAHDLNGNTLTGLKRLMEVVEDGGGRLSVVLAGHPKLRNDLRRPTMEEIGYRTDIFTLDGITGSQREYIQWLLKTSTGKGKPEDILTTEAVDLLAMKLRTPLQVQLHLTLAMEAGYQTGEKPITATLVESVLSRQLDDLEPTLTRHGYRLKDMVEQFDAKPAEIRALFNNQLDPARTAELRDRMLAVGLPI
complement(35113..36777)           PHAGE_Pseudo_B3: putative transposase A subunit; PSLT044; phage(gi56692580)          1e-11               MSSRRSAIPSDSLLQLRQRLDRLPPKSPERANQIAATAQLYGISVTTVYRALHLVLKPRTAHRSDHGQPRILPPSELEHYCELIAALKLRTTNKSGRHLSTGRAIQLLEEHGVETVQGLIKSPKGLLRKQTVNRWLSRWRLDQPRLLREPPAVRFQAENSNDCWQFDMSPSDLKHIERPDWVDPARGEPTLMLFSVVDDRSGVAYQEYRCVYGEDAESALRFLFNAMAPKTRSDFPFQGRPKLLYLDNGPVAKNHVFQNVMQSLKVDWLTHTPAGKDGTRTTARSKGKVERPFRTVKEAHETLYHFHKPETELQANEWLWNYLSRYNAQRHRSEKHSRLEDWLANIGQEGVRDMCSWEQYCRFAREPESRKVGVDARITIDGTAWEVEPDMAGETVILLWGLFDEEMYVEFTGETWGPYYPVSGPVPLHRYRTFRRGKAAERADRIHALARQLNIPISALSGSDLRVVSDDTQQRIDALPHQPFDTRKFEYHFPTVIAAKLAIADDLAIPLARMSDEDRAFIDSILTETLNRSEVLARIRDYFRSRQSGEDHAG
complement(36761..37321)           PHAGE_Ralsto_RSM3: hypothetical protein RSM3_gp14; PSLT045; phage(gi209901327)       1e-32               MALYGYARVSTSDQDLTLQTQILRAAGCEIIRAEKASGSGRTGRSELQLLLEFLRPGDTLMVTRVDRLARSIKDLQDIVYALNQQGVTLRATEQPVDTRSAAGKAFLDMLGVFAEFETNLRRERQMEGIAAAKARGVYRGRKPSIDPAVVYRLYTIEKMGATAIARQLGIGRASVYRALENYEQPA
complement(37528..38268)           putative carbonic anhydrase; PSLT046                                                 N/A                 MEQNQPAQPSRRAILKQTLAVSALSVTGLAALSVPTISFAASLSKEERDGMTPDAVIEHFKQGNLRFRENRPAKHDYLAQKRNSIAGQYPAAVILSCIDSRAPAEIVLDAGIGETFNSRVAGNISNRDMLGSMEFACAVAGAKVVLVIGHTRCGAVRCAIDNAELGNLTGLLDEIKPAIAKTEYSGERKGSNYDFVDAVARKNVELTIENIRKNSPVLKQLEDEKKIKIVGSMYHLTGGKVEFFEV
complement(38923..39411)           putative cytoplasmic protein; PSLT047                                                N/A                 MPQDESVVKRAREYFFRHHRYTEEDLESDYQAELCNYRDDTWEAPQRAARLSAAVKRYKTYEMLYFFFQIADEAGLDYTPLVVKRLCAHLFDRQGSQNIIVDIFGQKGRMHRSHDSDPDIIAAVAERYRQQAEDHWQTVLKNIGRVKQDYQKNQNRQKGAGD
39670..40785                       PHAGE_Human__8: LANA; PSLT048; phage(gi139472804)                                    3e-11               MRPATYEPEQIIEAGLALQAEGRNITGFALRNQVGGGNPTRLRQIWDEYQASQSTVVTEPVAELPVEVAEEVKAVSAALSERITQLATELNDKAVRAAERRVAEVTRAAGEQTAQAERELADAAQTVDDLEEKLDELQDRYDSLTLALESERSLRQQHDVEMAQLKERLAAAEENTRQREERYQEQKTVLQDALNAEQAQHKNTREDLQKRLEQISAEANARTEELKSERDKVNTLLTRLESQENALASERQQHLATRETLQQRLEQAIADTQARAGEIALERDRVSSLTARLESQEKASSEQLVRMGSEIASLTERCTQLENQRDDARLETMGEKETVAALRGEAEALKRQNQSLMAALSGNKQTGGQNA
41390..41806                       hypothetical protein; PSLT050.1N                                                     N/A                 MMTQGVSQHNAALWLVRQLQGLIQESEMENMLKTMREHFPVRTVVIEQSLDMFGVKRNEDGTLLFPRHSDKRFPVARIRKRLAAYGWRGERLNKEVARIVAGPDILPERRDYSIIFPYGWEKKQLTREMRRMFLRKTG
41908..42429                       hypothetical protein; PSLT050.2N                                                     N/A                 MALALARQDGGVLSPAQENLFLTRWLATALKQRRFSRDVTPDIEWLLKQGRQMGVSAKLASKLNYLWRSCTGELSEQNDLFRLTYALETAKDMHWNYRLLSDREWSGRNAVALSAGVNGIYLSRAKLDVGFNDSGRQINSLTARLTGNVAGVMKLFDRCGWQSLMPPCPTSIR
complement(42461..43402)           PHAGE_Sodali_phiSG1: transposase; PSLT051; phage(gi89886005)                         8e-87               MKKKNTTPTPHDATFRQFLTQPDIARDFMELHLPAELRAICDLSTLKLESGSFVEDDLRQYFSDVLYSLKTTAGDGYIHVLVEHQSTPDKHMAFRLIRYAVAAMQRHLEAGHKKLPLVIPVLFYTGKRSPYPYSTRWLDEFDDTALADKLYSSAFPLVDVTVIPDDEIAGHRSMAALTLLQKHIHQRDLAELVDRLAPILLAGYLSSSQVISLVHYIVQAGETSDAEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREATLKIARTMLQNCIDRNTVMKMTGLTEDDLAQIRH
43817..45022                       PHAGE_Entero_P1: ParA; PSLT052; phage(gi46401682)                                    2e-163              MENIEQLRKVATRAGKLLTSLSESIRQQKEELKLTEFYQEYSKAALYKLPKLSKGSVEYAVAEMEASGYIFKKKPSGNTMKYAMTIQNVIDLYFHRKVPKYRDRFDKAFTIFVCNLKGGGSKTVSTASLSHAFRAHPQLLFEDLRILAIDFDPQASLTMFLSHENSVGLVENTAAQAMLQNVSREELLSDFIVSSIIPGVDVIPASIDDAFLAEGWKGLCEEHLPGQNIHAVLKENIIDKLRYDYDFIFLDSGPHLDAFLKNCIGAADLMLTPLPPATVDFHSSLKFVASLPALIDSIEQDGHTCNLIGNVGFMSKILNKSDHKICHSQAKEVFGADMLDMVLPRLDGFERCGETFDTVISANPATYDGSTEALKSAKSAAEDFAKAVFDRIEFIRTNGGM
45019..45996                       PHAGE_Entero_P1: ParB; PSLT053; phage(gi46401681)                                    1e-88               MMSNERRKTIGRQLNTQASMVEMTDTQRSQVFTLKTGRKITFRFVRVPASDVESKTFVNQETNGRDQLALTRESLKSIIQTIKFQQFFPCIGIQQGERIEILDGSRRRASAIYIRTGLDVMVTNELLSADEARHLAKDIQTAKEHNLREIGLRLMALKESGFNQKEIAELEGLSQAKVTRALQAAAVPQELISLFPVQSELSFSDYKILLEVNEKLSEKGLTSEGLIQSVSDQHDAILSDYERPDDEQKSSILKLISQASQALIAPPPKEKSVISALWTFEEKDKFARKRVKGRTLTYEFSRMSKVVQDELDKAINEVLERNLSQ
complement(46078..47352)           PHAGE_Cronob_ENT39118: DNA polymerase; PSLT054; phage(gi431811050)                   4e-156              MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIARSAEAKKLGIKMGVPWFQLRSAKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLNLFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPAAKLT
complement(47352..47774)           PHAGE_Cronob_ENT39118: protein umuD; PSLT055; phage(gi431811072)                     6e-21               MLLLVAPEQEPVQSTAPLFTERCPAGFPSPAADYTEEELDLNAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVVDKAEKPMQGDIVIAETDGEFTVKRLQLKPRIALLPINPAYPTLYPEELQIFGVVTAFIHKTRSTD
48285..48755                       putative cytoplasmic protein; PSLT056                                                N/A                 MFRVTCIDLENGEFALYINGHYLSSEDGSGEKLYLGDILERLSRLPGVTTETVERPVPDSDEWSWNDVADSVFPACITLSRNMTVAAFKQRLSRFPDDALCCGTFWLASDFLALDSSLTEDDIDAAMELAQHCHDANDGFNWSHLQWAIDEVKRGG
48748..49104                       putative cytoplasmic protein; PSLT057                                                N/A                 MDNNSNINDTWLVGLSVDVNGTEMMVHYLVSATDLEHAEAGVLQMGRTWWPSLKREDDRHRWEYETGVVWFNSIILLDDVENSILRGLKFLDAWTVTGSTDAPVLRDEWGNDWRDITR
49486..50166                       PHAGE_Natria_PhiCh1: adenine methyltransferase; PSLT059; phage(gi22091198)           5e-18               MSRLILGNCVDIMSGFPERAVDFILTDPPYLVGFRDRSGRSIAGDRTDEWLQPACNQMYRVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSSKSAYVGYRHECAYVLAKGRPALPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESFTHTNAIVLDPFAGSASTCVAALQAGRRYIGIELMEQYHKAGIERLTAVQRAMQRPAANDVFYPEAA
50166..50387                       PHAGE_Klebsi_phiKO2: Gp50; PSLT060; phage(gi46402136)                                6e-05               MNYSGHEKLRAEVAALANSMCDLRATLKVLEERYHWQRHGLTERLAGQSLRRINTLLDEAYNESLMLNECFKD
50443..50856                       hypothetical protein; PSLT060.1N                                                     N/A                 MMYGTRKELNSKLKRMFGNDERFALLIWTKQDVMSLTQAMTEVEADAILREIGRKGMGEHTGDGISDSTVQALYAGLRTEIPTVSVPADLLARVTNIAGRALDTEDAQAWPLVCQEYPGVADAQVDIARLRQLALAA
50928..51692                       putative inner membrane protein; PSLT061                                             N/A                 MRNTLSTLIVRHGDNLLRRSGWPETVGVTQVAPGVVPGWLAVCGVLSAAEILALTTHLCQPLNYGRAQLLTASAQRLAGTPVRLHLYPVQAYPHPATVRECTEIRLPYAQEWLTTDEYADLLAFLKASADRVCEIVRQDTKRIAAALAPSGESRLMEKRIGNWRLLADEYDHDNWLDEEDEDGLDKVLDAVLVRNARFCPVLLTLVNEPEEEIEAAGVITDCLRFPGEPNRRWLDRRVLRDVVNEARSFTGNIR
52188..52622                       PHAGE_Pseudo_YuA: hypothetical protein; PSLT062; phage(gi162135127)                  4e-15               MQYSNQQRARVINVEESDRLSFLPYMFGNDFMLAELQLYALAKKWMPEYNGGFWHFIRLPEGGGYMMPDCDRVHMINGENWFDRTVSADAAGIILTSLAINRRCWTHHDCGNAALTRLYMLRDTQLWNHITFHPECNAIYAALD
52689..53123                       putative cytoplasmic protein; PSLT063                                                N/A                 MYGTVSTICCDLLKVYENHEKIAVIIWCEGDVREMGAEFNPTADDIQAVLRAIGESDSDALWRDGIGQNFVEGVLRELVALRPPRQIAVPEDVLRTLLPLMEAGMNLPRYQTQDRAAEEETALDTLRYLLSTNIPAHNLTEGNY
53359..53682                       PHAGE_Escher_HK639: DNA pol III theta; PSLT064; phage(gi356870660)                   5e-17               MSGLNLAATTKEEQDKVAIDLVASGVVYKERLAMPVVAELVVREQPEHLREYFRARLEYLRNSRTRMPRNMPEKRMRLKNSAIPDAFCLSLAGFYACRVMFFSGRGV
58669..58680                       attR                                                                                 N/A                 ATATCCCCGCCC