gi|291541372|ref|FP929051.1| Ruminococcus bromii L2-63 draft genome. [asmbl_id: NC_000000].2249085, gc%: 41.05% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 247625..247671 attL N/A TTTGGCGTGCCAAAAGGGATTCGAACCCCCGACCTTTCGCTTAGGAG complement(247751..248950) PHAGE_Clostr_phiC2: putative integrase; RBR_02460; phage(gi134287379) 3e-17 MAKTKLKKRADGRYQKSVYLGKDEDGKRKYKTVNGYSVKEVEEKAQLIKLQIGKGMDVLNAGMKWGKLVNLWLAYKKSILSEGQYKTYSIYLSHFSALNDRPINKLVKSDFQQIILDEYACNSHTGKPTAKKTLRDWRGAVRQVFNYAIENRVIEFSPAQYIEIPRDAKTSERRALTAQEQLWVISTEHRAQLPAMIMMFAGLRLGECLGLQWRDINLTERTIDVHQKLVTKGKAHIEQGAKTISGVRTVTDVPKILIDFLKKQPEHKPDDFVVTSTKGTLMSDTAWRRLWNSYMADLNIKYGDFSDYERQPKSKYDPKGVPFVIDRFTAHSLRHTCATNLLYTGHELHYVQKQLGHAKPSTTLDIYTHYVESLPKRKSNKIISIDALIKEFKPAQKQA complement(249126..249527) hypothetical protein; RBR_02470 N/A MGLLSKLFKKPKSEVKTPAMQPESGKSHTKVFKVAGVTFQGRQKLLKQLKTDKKAGKVLNVQLQEYDYKGEPAIKVLVNGLDVGNLHIEDVAFVKENQERILGINDFTIGEHYDENDKVSYNAKVKMLIANKN 249708..250277 Predicted Zn peptidase; RBR_02480 N/A MDYKKYQKSRNMSWEILLKENVRELPVNIVELCYKLGIAVKYYDKFEQGNDGKCTVINNEPIILVRQDCNRQRKRFTVAHELGHIMLGHVGRYELINREISPNDNPIEQEANVFASRLLAPACVLWGLKVKSADEISQLCDISQTAAEYRWQRMQELYKRNKFLIAPLEREVYKKFQDFILSHQHQANP complement(250243..250932) PHAGE_Lactob_KC5a: putative transcriptional regulator; RBR_02490; phage(gi90592588) 2e-09 MLGEKLRELRTELNLNMKQASEKLGISYTTYVGYEKNEREPNSETLIKLADFYKCSVDYLIGKTIRLNFIPHEIEEAEIKCPLCDYDYVHFIRVLSVNFSQEKSSGMAMEFLCEDGHKFYIVVETYKGNTYMVNVDDNNNILGYTSFINSNSDDKTNIHKEKLITNYAALNNFGKNKLLEYSNDLICSGNYNKVYKIKTAARDGSFKETTVTDDDFNKLMDLPDVDDLK 251446..251664 hypothetical protein; RBR_02510 N/A MANTHTDEIFNVYGALDNLNKRMKIVEEKVPNYTADMLEVYRNLGALTKRIAELENLINKETTTLKRGEEDE 252130..252339 Helix-turn-helix.; RBR_02530 N/A MHINEFAEILLKSRKQKSLSQSELAKKSGFTKRAIQYWEKGKKSISLENADRLLTALGVEIKIGKTESR 252344..252535 hypothetical protein; RBR_02540 N/A MAKLKLIDTKDRFLLEIDGTEIPYVTSYQITRTVGEVVLLKLALSVADVESVEIVSDKITNEN 252548..252745 DNA binding domain, excisionase family; RBR_02550 N/A MPRERPIINWDEVPVIIDVPYVARLLALNVDYTTRLAQRGILPAHKIGKLWRFDKEEIRQYIKEH 252748..252984 hypothetical protein; RBR_02560 N/A MWLRNYPTKRKLLKDIENLRAENRHLGIELRNARTDLALEKTASSGYKHENRELKRKLKALETPESESFGFECVGVEK 252981..253421 hypothetical protein; RBR_02570 N/A MSNKKSACDTVNATSTKNNKPDSIISSATEKIKLCNEKNLKDHKSKAILEPVKKMLCEFSAQNEEFARAVTAAENLENLIDEVGKKLPAAVSDLDVYQQIVGKIFPGAKVTFTMQIHMSEYELEEPNVAEQKTDPVTLDLGNLIDW 253435..254973 PHAGE_Lister_B054: gp62; RBR_02580; phage(gi157325346) 1e-11 MIKNPEYLLENIPDITSENEEQIVPYFPQYAFYENKSKRTCDYFCTSCQSWHIGEQLRLCHNQEFVCGHCKESVKAKALHYGRKKLERSRKFGFCFAVDGRLYIRFVTAYQGFSEDIYNENPVEMMPRYTFSDEYLYVYEQHAMQRFAYGWYDKSFHPLKTDGIIPSASQGLAWYWGPSEKTLYSGWGSTVLLNLDVITDTDLRYSCADELSNRYTVQGILKWLNIYVRHNNAEYLIKGGFEHIAELLIDGKLSLNKIHWKETNLLKMLECRKEDMHFFADYDSSAIELYRSVIKEEPTIHMASEFISKLSKLSTYAVDELHKNNLTYRQILKYGKNNRRVMLWKDYLDNCKKLPEGIEEIMPAHLEEAHDRTLEKVAFYANKEETEQIAKMAKTLSPLLMSTDSLIMLAPKSGEEIIAEGRILQHCVGGYVRQHARGDTIILFIRHKDKPKIPFFTIEVNPETLEIMQCHGYKNERDSGFKKPDEIKKFEKQYAEFLEDIKNVRNNSKRTA 254942..255919 PHAGE_Strept_Abc2: hypothetical protein; RBR_02590; phage(gi281416409) 1e-08 MSEITVSEQHRQAIELHQKIIVSANLAQQNIWDMCNGLKTMRDNKLYKELGYPNFEDYCETEVGFNRTQAHKYISIIENTSENVYSSKHLGVSKLYLLSTISEPEQAEIAEKLDLENTTVKQLKAEIDRLKDEKQEATDKSIDYCRQLNNAKKDADYYKQQADTSKESYRNIENQLAEEKNKNFKLTNKVQELESRPIEVAVAEPSDNERRLNETIKALERENIKHYDELEEEYRNNEKIVRKQLEDEKQEALRKQKEEYEERLKNVQTADGSSDDKDVFKAYFSIAYDSFVRMLDFAKQSQDKEFFKGKVEHLIEALATQNINL 255932..256525 PHAGE_Geobac_E2: Siphovirus Gp157-like protein; RBR_02600; phage(gi148747762) 2e-15 MKLYELTEMYSDLFNQFDAINEWEPDTNADGMPIDDDGNIIANVDAYRNKMLTAWFDTLTGIEGEFDEKAESIAIYYKQLLAEAKMLKAEKAAIAKRQSQKEKQAESLKTYLFKSMQALGRQKIDMPRAVMSLKKNAPSLVVDDEISFVEWAEEHNLDHLLKYSMPEVKKNDVKALCKKGEEIPFVHMEAKQSLSIK 256536..257444 PHAGE_Bacill_phi105: hypothetical protein phi105_39; RBR_02610; phage(gi22855032) 1e-40 MIDFSEVTRAKSKARIAVTGPSGSGKTLSSLYLAYGITGDWSKVALIDTEHERGRFYASRTDLNTGKFLYASMTPPYTPDKYIEYVKSAADIVGPDGAIVVDSFSHCWDNEGGVLDIKSQIAQQRGKNDYTAWDEAGKIQNNLVNTILSVDCHTIITMRAKMAYAMEVNDRGKTVPVKIGLAPVQRENTEYEFDMCFQLDRTHNASLSKDTTFLDSWTGIITPELGKQLGEWLSKGVELPRCSDCGDVIMAYGKRTVKQIIDGTTKNYGRQLCMQCVARLIKQKKQEKQREDADNATSTVSK 257419..258759 PHAGE_Lister_2389: helicase; RBR_02620; phage(gi17488553) 3e-113 MQLRPYQNDLVEQVRQAWREGYKAPCIVLGCGGGKSCIVAEIARRTTWNGKRVLFLVHRRELVDQIFRTFVRWGVLMDLCQIGMVQTFTRRLKKLPKPALIITDENHHSLAQSYKRIYEHFSDVPRVGVTATPVRLNGDGLGDVNDKLIVGVSTKWLIEHNCLAPYDYYAPSVADLTGLHTKMGEYVASEIEKAMTKNTVFGDVIKYYRQLADGKKAVCYCSTVKHSMATAQAFCEAGISARHIDGATPKAQREQIINEFRSGKITILCNVDLISEGFDVPDCECTILLRPTHSLTLYIQQSMRCMRYKPNKRAVIIDHVGNYARHGMPDDDREWTLEKRKKLSVKKIEKEQEEKVRQCPECFFTFSAPPAGQKAVCPHCGYVFPTAERTVETDTTAKLIKVEGFKLDFSTPDDCHSYADLLAYAKSHGYKTGWAYFQARKRGMIA 259073..259633 PHAGE_Lactob_phiAT3: putative SSB protein; RBR_02640; phage(gi48697289) 3e-22 MGFKSNWNEATQGSSIKPEGDYECLIAKVEERVTKNGKENLNISMVIRNDVEQNYKNGYIFDTLWKKKEPTNADLQVKGYSYGQIMALGKAAGLPDGKEYDSLEQFCGELVNKPLRVTIKHEEYNGKTQERVSWRNPTKYPTVKHISKQTTTNTATAYAQPQQSYAPAQTANQGFVDMPIDDDLPF 259712..262036 PHAGE_Lister_B025: gp60; RBR_02650; phage(gi157325276) 0.0 MGFTNLNPNKNKYFAVPEELKGYKNWVCWQSYPDPKSHSGISKKPINPRTGGFAMPNNSDTWSDFETAVRESAKYSGIGFMFSNSPFFGVDLDDMPNDIQDYQNGGADNIISEFVNTLQSYTEFSQSKTGVHIICKGTLPEGRRKAKNDSGGFEMYENGRFFVVTGDYCSAYAYINDCTESIKPLHSKYLGKATEPQPKLRNIEVNLNTVDDIVRAACNAKNGSLFKALYSGDFSAYSSQSEADMAFCNMLAFWCGCDTDKMDSIFRQSGLMRDKWDRKQSGTTYGIITLQKAVSGCTQTYNPKQHNDYSISIGEGKAVQAVNEEKMRAYTFDDMGNADRFVDLFGDNVRYCYTEKKWYYYNSMKWCVDNIGVVLRMADKSVEAMKAEARLYLQADEENGGDMSKAFEKHMKASRSNKSKKAMLNEVEHHIPVLPAQMDKYRMALNTPSGIINLKNGEVRAHNPEYYFTKITSVDCSQTAECPRWLAFLDDIFAGDKELIRYIQKAVGYSLTGSTAEQCAFFLYGTGRNGKSTFIDVIRDVFGDYAANIQPETIMVRNSQSSAINSDIARLKGARLVTSVEPNEGVRINEGLLKQLTGDDTVTARKLYSEEFEFKPEFKLWMATNHKPIIRGTDTGIWRRIHMIPFNVQIPEDKVDKNLTHKLKAEMTAIFKWCIDGCILWQREGLKMPSAVLQSVREYKREMDVISAFIEDRCVLEGSVQASTLYAAYTSWAGDNNEYCMSNTKFSTELAKRFEKVRGKNYNFFNGISLFKDC 262167..262577 hypothetical protein; RBR_02660 N/A MKKYDFNNPQVFEQLEDKAIDGQLDYSSFPPPEYKYFSRLAKVGYNNRHKGWDINICLEWQDKLRTEYKRDRNDADEYRLLSQRIMDNVKKSADFVRKMYQSQTNEQTVINALQALECLTNENGLTKRITEKLKEN 262583..263080 PHAGE_Lister_A118: putative methyltransferase; RBR_02670; phage(gi16798837) 4e-54 MKVHHCIDVCCGGRMFYFDKHNPDVVFMDNRKFTDTLCDGRAFEVKPDVVADFRNIPFKDDTFNLVVFDPPHLIKVGDKSWLAKKYGKLNPHTYKDDLSKGFRECFRILKPYGILVFKWNETDVKTNEIIKLSPIPPLLGHKSGKLNKTHWLLFMKNGTESEVEE 263077..263250 hypothetical protein; RBR_02680 N/A MKIEELKQHIEECVELLSKKQKQVYDSKKRRGKDFYIFEGMITAYARVGHFLENLEE 265540..266826 PHAGE_Lister_A118: putative portal protein; RBR_02710; phage(gi16798786) 4e-26 MFPLENIRQALNLRLAITAEMQKAIGIWQNCYVGKAPWLDENVISLRLEQSITREFANITLNEMTVNISNETLSKLFETATEELNSELQSGLATGAMVIKPLGGDRVQYISANAFVPIEFDAKHRLVKVIFPEFKKIGDNYYTRLEYHSLDKDKGLTVTNTAYRSASPEVLGTEIPLAVIDEWADLPPAVTYPDMKRPAFGYFRVPIKNTVDGSSCGMSIFDSGLEIIQKADMQFGRLDWEFESGERAIHVDSAALKNGKADRLNRRLYRAVDVDLGDEELFKDFSPAFRQSDITDGLNTYLRMIEFAVGLAYGDLSNPETVAKTATEIKSAKDRKYNTVSAIQKQLRYCLDDLVYALAFYNSLTTSGYSFVCDFKDSILTDEETERKQDIQDLNLGIMRPDEYRMKWYGEDEKTAKKNLPQSSEVIE 266826..268865 PHAGE_Lister_A118: gp4; RBR_02720; phage(gi16798787) 1e-14 MFTPTEIEALPSAMEQLYRSLQLNIMSDLTERLKANGEEITSAADWQINRLYELGVSKDEIDSLIQSTLDVSDDEIDRIYDEVVKSGYARNEELYTSKGKEYIPYAENKQLQQLVKAVKNQTKSEYRNITGSLGFAVRNADNTLSFTLLADFYQRTLGNGLMQIASGAVDYNTVLKRAVKTMTDSGLRTVDYASGWSNRVDVAARRALMTGFNQVVTKVNEDNAEQLGTEYFEVSYHRGARPTHQVWQGRVYSKKELETVCGLGTVTGLCGANCYHSYSPFIKGIDTPTYSEEELDRMNEEENTPKEYNGRQYTAYEAQQRQRRLETAMRADRQKIELLTQGGADDDTITGAKVRYFQRQDEYVKFSKAMNLPQQWERITVDGKNALGSKLPKKAERFDRRAEYSLDGDNKRIAQTRADEWHDKAKKAKKKSKKIDTGTSQKSDVQKKTVEKAENNDIIKETKQLSLSNVEEFENWQNDYYELNKDVSFSRDDNPSIYRYTGGDYDIINALERGGESLEKVKKRYGEKYVSSLNGVGDEISKELSKFKLNEPLKLKRSVGNVDFITNATSSVEDMRKMIGKKFTEKGFTSTTLCSDTQLAFGGIDKPTRTTLEIIAPKETKGAYLYKISDSPAEFEFLIDKNTTYEVVDAGEREITVKDYKGNYEKKTERFMTLKVVEQ 268862..269188 hypothetical protein; RBR_02730 N/A MIDNPVDWFYHSAKYAIDNTGTIQYGCAFLMNDNAPKSVVVEYKKYLNLIKKPFFSSEIGIFEPYVVNGQHRYKLIGFSENLTAFEKEQAHIFKSLIENGYISNDPFI 269380..269784 PHAGE_Strept_Sfi21: hypothetical protein Sfi21p44; RBR_02740; phage(gi19263419) 6e-29 MRKRILAIVLMVVMIATTVLVTVGCTEATQVSYNVSQEADNFNVIRRLTVINTRTDKPSFELVAAFSLQVDNDDNQIEVVCETGKGEYKKHIIGLNDETMYVVEDISGAEVDKYRYEINFLPKQILPITFKSKD 269831..270031 hypothetical protein; RBR_02750 N/A MKIRVTTAFNDRQNGYVTRPVNEVFECSEQRAKELIDGGFAEELKPDAPKKPRAKAVKTEKTEKAD 270127..270711 PHAGE_Lister_A118: putative scaffolding protein; RBR_02760; phage(gi16798788) 6e-12 MQKGFTMKNIHTLLSEIGFTVPEDKKVDFEKAFADNYKTVSEVEKLRTSRDNYKSQLETAQTALKKFEGVNVDELKGEIKKLNGELETKENEYQIKIADMEFNSVLDTAVSKSGAKNAKAVKALLDLENLKTSKNQADDIKKALEQVKSKNGYMFGSDEPFQNPVGATDTGNGGTGSNPLASMRAAMGLSAEKK 270741..271616 PHAGE_Clostr_CD119: putative capsid protein; RBR_02770; phage(gi90592716) 2e-27 MANTIALFKQYTALLDEVYKQSALTSKIDGASDLATQGANANELIIPMLTMDGLADYSRNSGYVDGDVELTNETVKCNFDRGRMFTVDTMDNAETAGIAFGRLSGEFIRTKVVPELDAFRFAKYAGTSGISSVSATLTTGEEVVKALRTASTKMDEDEVPFENRHLFITSPLYGLVQDLDTTKSREVLSRFADTTLVPQSRFYTAIEQLDGTSSSKEKGGYKKATSGKNINFMIIHGSAPIQFTKHLDTKVIEPSVNQSSDGWKFGYRMVGIADVYENKKAGIYCHSAVEA 271629..272000 PHAGE_Clostr_phiCD38_2: hypothetical protein; RBR_02780; phage(gi333798115) 7e-08 MTAYADEGYYISEYLCGRKAVIVSAFDYYARSATLLIKAYTGENVDGNNIPESVKLCCCELAELVYNDEKQSANSGISSASVGDESVSYVSEEERKTAHKKAVRHTIYKYLADTDLLYRGGRR 283677..283723 attR N/A TTTGGCGTGCCAAAAGGGATTCGAACCCCCGACCTTTCGCTTAGGAG