gi|343385146|ref|CP002874.1|  Brachyspira intermedia PWS/A, complete genome. [asmbl_id: NC_000000].3304788, gc%: 27.22%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
61353..61964                       PHAGE_Haemop_Aaphi23: putative Lys protein; Bint_0061; phage(gi31544025)             1e-31               MLTKDILKKSGINQKWYEVLSKSFDEYNICKSDNKEENINELAMFLAQCGHESINFTKLEENLNYSANTLLKIFPKYFKDIDEAKEVVSKGKEAIANRIYGGRLGNSKNEGYKYRGRGIIQLTGKNNYKKYGEKLGINLVDNPDLASSELIASNIACCYWIERGLQPFARKGDVKTVTKMINGGYNGLEDREKRFDKILKILR
61978..62394                       hypothetical protein; Bint_0062                                                      N/A                 MKMPRTTISDLDKRTASICHRIGINEDGSSNGNGLINTMKEIKEQLDSHEKYLDNLSEDMVKIDYRLEKLESLAKVNNEEQQKIINEMKEIKKNIDDSITSTKIKKAANFILLLAGVTTAFGTILGTIYFFTNHFIGK
62396..62689                       hypothetical protein; Bint_0063                                                      N/A                 MKKLFGFLDAKGLGKKTSWFTSIGAFAFGIIMTSFIMITQKRFPNYNESIAIVIIMWGASLVTGTTDLSIIINNFFKAKYNYKENYKENDSNNQHNN
62718..63038                       hypothetical protein; Bint_0064                                                      N/A                 MKSKYFIYFLIAGILLGYISFLNCTIKIKNKKIKSLEKEIYTTKLKISNIILEKEIIFYNERKIMLESFRNSNEAIENIKESYLKSDEINALNAIINNYYRNIQKE
63042..63440                       hypothetical protein; Bint_0065                                                      N/A                 MIKKIISEIWEKIKKYRAAIIMYLVMLAVSIVSDIFFGGFNILKYISYAVLLTIFIIIMIIYKDKIKETIDNLEDKIDSCINKQYLLDKGNNREELIYNLSNLQEEIKKDIVNNLDNINNPKIEVKITDEKN
63454..63588                       hypothetical protein; Bint_0066                                                      N/A                 MVIFLVSCTAKYITIPLSQPPSFYKPNNNINTSKELIKEYQKVL
63661..64233                       PHAGE_Synech_S_SKS1: hypothetical protein; Bint_0067; phage(gi472340875)             7e-05               MAPKSNIDKLDKKTKEEIIELLQDSTVRYIDIANIINEKLGKKAVSKSGISRYKKRFDNLLDKKKEIEAIASAWKDKTGDELGNILGKQTMEEIRMLIYDFVGSLQEIQNSEVANMDIKEIEKMSNSIEKATKGIINLENAISKNNQHTEEIKNKALQEAQIKAINNANSAGISQETVNTIFRDVFNINN
64236..64904                       PHAGE_Burkho_BcepMu: gp28; Bint_0068; phage(gi48696938)                              3e-49               MNNKVKNKKILLPYQEKWIINQDKVKVWEKSRRIGASYVEALNCVLKASLSKKENGMSCYYISYAKDMTQQFIKDAAFWAKLLNIACEDFGETVIKDENKDITIYKIRFESGFEIWGLPSVPRSIRSKQGHIVIDEAAFCDDLKELLKAALAMLMWGGSVSILSTHNGEDNQFNLLVKDIESGRKDYYLQTTDIDEALRDGLYKKYVKYLKKNTVKVKNKNG
65027..65701                       PHAGE_Burkho_BcepMu: gp28; Bint_0069; phage(gi48696938)                              4e-26               MYRFYEKDDFTFKTENERYAKMLEYFNIVKHLFTNIKDEVVLGEDFARSGDLTVLWFEKIKLSKNKTKTLCVIELRNIPFSNQEQFILLCINELGRKFLGAAFDARGNGQMIAENLSLAYRGLILEVMITRKWYAENMPKLKSAVEDKTTNIPKDNFIIDDFLQAEVWQGIPLIRERTGIRGNKRHGDSLIAKVMAIYAINELELNIYQKITYEPVKTQNCWRT
65806..67407                       PHAGE_Haemop_SuMu: portal protein gp29; Bint_0070; phage(gi418489080)                5e-52               MNIKETIKKIFFNKEKIKYNPPCLSEIAYSVPYSNRSEWSDFSLIQSLSPSVLANIFNDVKSGYSNKEYLELASDMELKDSHYRSVLNTRKLSILSLDIKINAGSEDKKDIEIAKSAERDILYNKTAGIYSLIFNMLDAVSKGFSVNEIIWQSENSIWKPYQYKYRDARFFKYDYINSSKLKLIDPYNSTQLYDLIENKFIIHEPKNFSGLQVLSGLAMPALFLFMLKYYDITSWAAFIDRFGYPIRIGKYGHKATEEDILTLKRAVSSIGSDFGAVIPESAILEIIESKTTQSTSDTYQKLAEFINKEISKLVLGQTMTTEDGASYSQANVHNQVREDILKADIKQIEETLNQQLIIPYCRFNFGELENYPKLELFKPDVKNIELIINAVNNLSSKGLKVKAKEIREMLGLSEPEEQDEIIGGIDETIKDNGKEDFEKNNYELNSAVLNNDISEDEYKDDYIAIEDDIINVLEKTLNKCKDFEELKKELEELTLNWNPKKQAELMAAAFFMARAKGDNDFDGEAHSVKDTNL
67544..68794                       PHAGE_Burkho_BcepMu: gp30; Bint_0071; phage(gi48696940)                              6e-27               MKESIEKAIENGETLEQFKKNLLPILYQKGWIGKQLIEDPITKEIKEVYIDTPSRLKTIYETNLRSAYMKGRFDRAYNSTLHPYLMYRIGPSKNHRKEHLEWDGLILDKNDPFWLSHNPPNGWGCKCYTVAISKARKEKYEKEGIPTADGDGQTKKIKVKTQRPKIEYTTYINKRNGTISKVPKGVDPAFNFNQGNYNRDLVLFNDFMKKVQDKFPSQYQNIAETILRSEIKKEQFENWIKGAFEYDSDNPQNASVATGGTQGGQTPQSSNPKSITAIGFIDSAVKNYLKNQNIDIGESITIGLEARLLRRSPQRDSIKAKRHAKKNEALEAKDAEYIIKCILEGQVYFQTDNKYIIYLYKIEDDKYLQISIATEINFSGRNSGITIPAVRNIQFINETQKKSKYDADTKKWIKIR
69304..69513                       hypothetical membrane-spanning protein; Bint_0072                                    N/A                 MKLIKILLISLIITSSIFAQANTVYISDKGKKYHRENCRTLRGNKYPISIQEAKERGYTACKVCKPPIN
complement(69510..70172)           hypothetical protein; Bint_0073                                                      N/A                 MKNNKSFIIIIIFAALGAYLGTSFYKSNNNNPKDKVNSKNEIIGIWKNKNTGFVYNYQNETLIISDNNDDIFLILKYMITNSSLIGIDSNNDFYSNAMLISKNKNKLALINDEGKVIYDKVNSEELKYNIVKNEKEVVGLWVNELESISYGYSFFDDGSVVMLIGSKPVNTVFKYYISNDIFYTVKDNKAHTEGFPLILLKNQLYMFGDAKKPLIKMMDN
complement(70183..70998)           PHAGE_Mannhe_phiMHaA1: CI repressor; Bint_0074; phage(gi109289970)                   6e-11               MFIIFLLKKVIKYTFTKVFTNIMLKIGDRIREFRKKLNISQEEISKILGTNQKSYSRYENNLTYPPTEILEKLAEVYNFNLHWLITGQGEMFIKNNIDSSENKKYTVNEFKSEYDIDKELENINGEWIAKSSKYILEDSSSMLETGQKNLNLIKVINGDMNSADAIQIPNELKKYEGKLIAIIQKGDDMEPIIRDSSIVLCDTLGFQGAGLYVLKLNNIYMIKRISLKLDNYLLSPDNKLYESFEVPLNSDKLKIGGKVRFVANVFIKNIF
71134..71382                       hypothetical protein; Bint_0075                                                      N/A                 MSNYISKQVGKYISYKLKLKGITHNDIAKSANLSTAIITHVLNGRKSSQKAKKAIAAALGYTDFRILEYEAVKAVNDELNKK
71440..71790                       hypothetical protein; Bint_0076                                                      N/A                 MKKLEYGLIANRHNMPVNDFIFNRIKDPTKIRNIEAEAYRKIKTIANDCKEEKYIKLDLYVTGLSAALISVIKACKKVHREDFINIKLVLKHYSWKNKNYHNQTIFFINKLINGGK
71790..72407                       PHAGE_Burkho_BcepMu: gp05; Bint_0077; phage(gi48696915)                              5e-42               MDNNFDESKFMKNAQGAFIPIENVKPVDKLRDDLVKNLMSKTKKVQKIIEDHRNICWEDIKAFLEISASEHNVKYGGEKGNITLLSYDGKYKVVIANQDYISFNEKLQIAKDLIDECIRKWAKGADKNLLALVNDAFKVDKQGKISTEKILGLRRLEINDFTWNEAMKAITESITVEDSKRYIRFYERRDKDGKYEHISLSPQSL

#### region 2 ####
74342..74353                       attL                                                                                 N/A                 CAAATGATGAAT
74721..76445                       PHAGE_Pseudo_B3: putative transposase A subunit; Bint_0082; phage(gi56692580)        4e-38               MNEWVLKMQEAKTAKERKKIVEEYSRIIGRSVSFCYKELKKNGYDSKRAKRKDIGKKNIDDNTIKIVASLVKTGIRENGKKTMPVNVALDMLKRNGYDINIKTSRMREILKDSKIDADRLKKDSHNIRLRSEYPNQVHQVDPSVALIYFAPESEDGKSKMKIIEDSEYYKNKDFFNDAKDKKGKKIRRKKCLRYVLTDHYSGSICLRYYAAYGETAEYLYDFLLYAWSKKEREDYAFHGVPEILVWDKGSANTSKSVANALRSLKVKTIAHSTGNSRAKGQVENANNLIETHFECLFRLEAISSIEELNEAAERFCVEYNTKMKIKRMGQIINSRYLLWQKITLEQLRELPDIEVCKQIFSAGVLKRKVKSDLTISMYHAKAKRTLYYSLINLGVEKGDEINAQAVLFGDKYKAIIWFNRKNEYGESEELSYEIEPIEIDEAGFDINAAVIGKEYKQTKLTENENDIKEIENISEEIKRQEILKSHSLIQPDIKFIYQKEGEKINLDKNDNDSREILLSYVEVMEKVKSGLGYVPDDLAEELKKDYPNGVEYGYVDEIIRFWKNKEDKENENII
76727..77587                       PHAGE_Pseudo_B3: putative transposase B subunit; Bint_0083; phage(gi56692579)        8e-43               MAINIKAFRKFGFKHDPFFGDIEKMEDVYLNGDMRFMTEFICQTAKQGGMVALIGESGSGKTTLRRYAIDTMEKENQRVKIIQCKIIDKTRLSVGAICDSIILDVSSESPKKSLEAKARQVERILTNSSRMGFAHVLIIEEAHDLSIATLKYLKRFWELEDGLKKLLSILLIGQTELAGKLDESKNYEAREIIRRMELLKIEPLSDPKDIKTYLQLKFAKAGVNIDDIITDKGIEAISSKLSSKLLKGTTISKAYPLSINNLMRRAINKAYDLKINKIDEHLIMSL
77618..77773                       hypothetical protein; Bint_0084                                                      N/A                 MDKNKYKTLAIGIDKEIYAELDKYCKEKSITKSQFMRKIVNNILKRIIKNI
78386..78727                       hypothetical protein; Bint_0085                                                      N/A                 MTVEELKEVLNSMNVAGAFACQRHASRGGTQGASSKNQKNENDKHFYVTYQDTKYLTEKQVKFIKGLWWKKSNNPSENTLKVFIKRITGKNSLSECGHKEANILITAIQEIKK
78735..79205                       hypothetical protein; Bint_0086                                                      N/A                 MNNDFINSIKDSLLEAGISEELMIKTLRCFCRKYGGQKVYFSSSAESKRSNEIFNLIYDELDEENGKVEYGTSEKITRIFLENFYNISEYVPLEIKYFRKEIAAEILDEYNKSKDKNKTQFEICSKYNITFATFIKLKNQALKNIKIKSKPSKNLF
79377..80378                       PHAGE_Haemop_SuMu: bacteriophage Mu I protein gp32; Bint_0087; phage(gi418489085)     2e-19               MDMKETVNAFELDYNKTIPKEIELIPSEEIFTGFDGRVFKARDKQAIISKTNSKLKYVVIDENHRIDYTAGTGQSTEAMGWMHDFFVKEDNSVWALVEWTESGSAKIKSKEYKYISPVYEVDKSGNIISILRAAITNNPNLRLTALNNKQNEFAESQLLGENSNKGDNMSKEINNALGINESASDSEAVNAINKTKNEIESLKLELNNERENKKSLIEKNTNLEKALNEVNKEFAELKKVNLEKDAQAAVEKAINDGKIAPSTKDVYLSLCMEDGGIEKFNKIMENTPKAGLFGETNIPNKTDNVSLNEADEEVARAMGYTKEEMLEMKKNEK
80415..81326                       PHAGE_Pseudo_JBD88a: hypothetical protein; Bint_0088; phage(gi448244723)             8e-65               MPVTVDSKLQSLKTVIKHEFNNAYGKLSPDSFCNKVCTQIASNSASNTYDLLGDFPEFKEWTSARQVKDMKEHSYTVSNKNYEATLGVKRMDLENDNIGTYRIKAARQAEAAIEFFNQSAADLLKNGESALCYDGQNFFDSDHPVYENSDGTGSNTPTSNIYGAGSSAAWYLLDLSKSLKPFIFQQREALKMEAITNPNSEYVFTNDAYMFGSSWRGAFCYGFWQQALISKEDLTAENFEKAYAQMRKVTKDGGRKMGIRATHIVIPPDLQSKAEGIFNVANNAAGAGNINYKKVEIIVCDWL
81345..81656                       hypothetical protein; Bint_0089                                                      N/A                 MPKTKQNDIENKEDQGTENTNMNNKDEINDLQQDNTKQADLPDTESDNKSEKIKVFVKCNTGNNSYYRAGIKFFNVFREYQITKEVLKILKKDKHLIITDTLD
81781..82215                       hypothetical protein; Bint_0090                                                      N/A                 MKSLISYEEFASRYSQDVLPELKDEGEPKEHVLQAINDATGIIVSHLFWIIDKEINDITENIPIQFESVLKTICCDIAFLRINDKVSSDEDSREKYKNAMNMLEKIDKEYRGLSGPNLQSSFIVDEKTDKDLFDNRFFKKGEFI
82218..82682                       PHAGE_Pseudo_B3: hypothetical protein B3ORF35; Bint_0091; phage(gi56692603)          8e-05               MSAEVFITDIEEIKKLQDKLKSLKLSSSEERDILEAIGTEIKTQIEERFENQRDVSGNKWQDISQKTREYYNKKGIVGSILSRTRQLRDTIESQVNNSQLLTGATKVYAAVHNFGDDSRNIPQREFLGLSSDNYADIENIINEFLENSIKKANN
82705..83238                       hypothetical protein; Bint_0092                                                      N/A                 MTYLDIRNNVENQIKKYFEDRKIKINVEASAGALNIDEIKRIFIKAPSIFVSMANINVEKEYIRFVNYVVVRANQKDKIYDSGLEITGALIACIKNIDSGSWGYDSKNISADCLYSGELDKINACLWGISWDLNVRSINIDGDINDVSGLDDFEGYDAEHKVEDKTAEDIVNIKDNS
83298..84794                       PHAGE_Entero_Mu: major tail subunit; Bint_0093; phage(gi9633530)                     4e-38               MSTINFSQIPDSLLVPGQYQEVDNSLAGTRTEIKRILLVGPFLATGTAKNGVIERITSTIKAGEKFGYGSILSVMCEQFLSVNKNDELYALPITDNGTAYSKTYKIALTEANQTGNIKITVNTTEINISVVKEDTAETIAGKIAASVNTMFNFFMNAVSGESANEDATWNITFNALNKGDYGIILNIESDNSKITFAEDSKTDAADSPVSDWKVYFDAIGETRYNYIINAFNDENTLKKFAEELESRYSATRQIGGRMFAYLKGEIGNTSENDSIVGKASKVNSPHICFIPIVQTSSSINTNEFPIIFLTKIAAAAITELINDPSSNTLGLEVAGITTNKSLLFEERQNLLTGGVATYNTDAQGNVLIERLVTSYTTNSEGARDTSYLDIQIVETIDAIRTYINNEAKTRFKGWKLSSTNEDFGAGAKVMNAEVWTSFLCELYQSVFMEERAWTQDFQSYKESITAQVKSGTKTWLEYVHKPILIGQFYIGAGLNQFK
84838..85191                       hypothetical protein; Bint_0094                                                      N/A                 MELFKVYKVTSRLLGDLPLQANGTTFSPQSYSRETKIGETPNATGYVETNTVAELKLKLNAVLDPGVFSGVKNDTLTIYFKNGMVYMMANAWVTDKVELGQGEYEVTYNSKFSEKIK
85211..85684                       hypothetical protein; Bint_0095                                                      N/A                 MNNEIVINLKYPITQGERTVTSLILPKNVLVRHIMAGDPYPQNTVSREVAMLSAMTGEPEIILQNMEITDWVICQAKLNELINNSISNTEEKDNKKNDEYVEEDYIDIINIFRTLILEVMIMSKGLSYDNLINMTIKEFLKWHKESLRIYKVIKGIF
85801..87408                       PHAGE_Geobac_E2: putative tail tape measure protein; Bint_0096; phage(gi148747742)     6e-17               MSNITAGVLIKLKDQFSSGIDKASNKVNSFQSKMQGAFSAIGAYSAKIDGILNSTASNLATLGVSIGVGATINKMIAFEDRINKIGTVAKMNAKDIETAKRQMEGLSEAIYKAAMQSDVKIDANEIIDAMDQIMEKTGDMDFARANIDNIAKSIRAFNATGTDIGSLLSEFSKLGYTSEETSKLLDELYSQGNKGAFVAKDFASLGASIISAYSVIGTAPEDIKNVGASMQVLRQAVGSSDEAVTRLEAVMSELANPETQYALEQLGASLGKDFSVTDSNGKMKDLNTIMMQIVNAQKELGNGWGALRENKVFGSDMVYEALNAYKNYGSSLEKYLDLEDAKGMRDKAAAENAKSLAANIQNLQTAFDSFANKNVAPYLEKVTGILNNFAKNPERFDAVFKVIAAGFGIFMTAKLVSGVANTISSINSLKNMAKGNISSTLQADSRHIQGTGTPIPVFVTNMGQFFSNGNNSNTFKAGQSSSNIPNINNGKMTWKSLGKTAGAGAMGAAVTAIPMAISGFMAANDPSLSKKNKIK
87405..87833                       PHAGE_Vibrio_VP882: phage-related tail protein; Bint_0097; phage(gi126010872)        7e-12               MKGEAVGGAVGSIAGTAIGASAGAATSAAIGAAIGSVVPGLGTAIGALVGAGVGIAGGYLGSKLGGKIGESLTKEDTLEKTITANNIQNNNAQVEMKGAANIGVDIKLTDERTYYKATPYNNNIPNINIQTGNINEIRNMAY
99055..99066                       attR                                                                                 N/A                 CAAATGATGAAT