gi|345503809|ref|CP002461.1|  Lactobacillus sanfranciscensis TMW 1.1304, complete genome. [asmbl_id: NC_000000].1298316, gc%: 34.70%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
709737..709748                     attL                                                                                 N/A                 ATTTTTTTATTT
complement(720238..721170)         PHAGE_Achole_L2: integrase; LSA_07420; phage(gi9626516)                              1e-16               MNQSNQKLIQLFIKYIINERQYSDNTARAYHDDISQFSEFLADSGVDKDFSLIDSFDVEVYLSHLHDFGDNNNTIARKMSSLRSFYNFLVNNQIVEDNPFVYVNIKKHTNHLPRFFYNKELDKLFETAKTAKNPLLAYRNTSLLEVLYGTGIRVSECANLTLDDVDLSNNMMLVLGKGNKERYLPFGKYANDAITEYIHKSRNVLMDKFNKQHPYLFVDQHGSHITSRGIEYVLNQIMKKSGLNTSIHPHMLRHTFATQMLNNGADLRTVQELLGHANLSTTQIYTHVTKEKLLKNYQNFFKRRDDENPD
complement(721223..723268)         PHAGE_Cafete_BV_PW1: putative DNA topoisomerase IA; LSA_07430; phage(gi310831073)     9e-95               MVESPAKAKTISKYLGRTYTVVASKGHIRDLPKSRMGIDIPDDFKPDYISIRGKGDTIKMLKAEAKKAKEVFLASDPDREGEAIAWHVSHVLNLDVNDKNRVTFNEITKETVKDALKHPRTIDMNLVDAQQARRIIDRLVGYSISPILWKKVKKGLSAGRVQSVALWIIIKREREIQAFNPEEYWTIDSIFKKGRSKFKASFYGVDGKKFPLGNNDDVQNVLKRLDAKADFEITDVKKREKKRQPPRPFTTSTLQQDANKKLHFKTGRTMMAAQQLYEGINIGKEGSQGLITYMRTDSTRISAGAKLEAAQFIHDEYGPEYALNHPRKLKLPEGAQDAHEAVRPTSVMRTPKQIEKYLTKDQFKLYNLIWSRFVASQMTPAIVDTETIKVVQNGVEYRANGSKLNFEGYLKAYSAGKKKDNILPDLEIGDHITLDNNVPNQHFTQPPARYTEASLIKALEENGVGRPSTYAPTLMTIQKRYYVKLDARRFVPTELGEIVNKLIEEYFPEIVNVDFTADIEGKLDDIEEAKLRWVKLVSEFYQPFSKEVSYAEKEMEDVQIKEPLAGFNCNICGSPMVEKMGKYGKFFACSRFPDCRNTQTIVKEIGVICPKCHEGQVIERKTKKNRLFYGCSRYPDCDFVTWDKPIGRDCPKCGHFLVNKKVRGGWQVICPEGDYEENAIK
723298..723311                     attL                                                                                 N/A                 TTTTACTTTTTGCT
complement(724034..724309)         hypothetical protein; LSA_07450                                                      N/A                 MDKRTLLLRIKLCPGIGLKGENLAYQWLKNENIGNLDIEEVQAMTINLLREHHLNYQKFAVSFLSRDLNIMVNQAMRKNGLQFLMTSIQNN
complement(724351..725115)         PHAGE_Emilia_86: putative ribonuclease; LSA_07460; phage(gi73852875)                 3e-31               MNIKEIKESFMRVRETQDPLFSLYKDDKRKGVQNIIKQTQSRIARQQKAENDFEKRFEIETNFWSQGINLIAGIDEVGRGPLAGPVVAAAVILPHDFKILEVNDSKKLTDQKRRELVEIIKEQAISYAYAVIDNHVIDEVNIYQATRIAMKQAVESLDVKPQQLLIDAMDIDLDIPQLKIIKGDAKSNSIAAASILAKVMRDDLMIKYHKQYPEYDFCNNDGYGTPKHLAALETYGVTPIHRKTFAPVKDLTQK
complement(725118..725981)         Ribosome biogenesis GTPase A; LSA_07470                                              N/A                 MKSNIQWFPGHMAKAIRQFEENIKLVDIVFELVDARIPYTSINPEVKRISRDKPRLMILTKADLADPVMTKKWIEYFKSQGIRAIAIDSKVNGVRKKIENISEGILKDYLESQSNKGYDRKALKAICVGVPNVGKSTLLNQLVSKRSAQVGNRPGVTKGQQWLTSNGKLVLLDTPGILWPKFQSQEIAEKLSLTGAIRESSFHSDDVALFALDFFKQNHREELKNRYHLTDADFELSNPDLLLKITANLGMRDDYERASDRIINDVRKGKLGRYTLDFPDKISVGEE
complement(725992..726213)         UPF0346 protein; LSA_07480                                                           N/A                 MRKSFYEYLMTERNPNGYDEISQFANNAFFDTQFPKHENNFEIISKYLEENAGYLPSMTIFDEAWQKYLAYLD
complement(726226..726717)         PHAGE_Bacill_phiAGATE: putative dihydrofolate reductase; LSA_07490; phage(gi448260875)     7e-21               MLAFIWAEAANKVIGKNGNLPWHIADDMAFFKETTLNHQIICGYTTFKSFGRPLPKRKNLILTHRDPSEFPESVTVFNSKDDLLQYANKFPNEMIFVVGGRAIYQELLLYADYLYRTKIDKNVDGDTKMVEINYDNFKLIKKIDGKDNLDYPHHFEIYQRKNK
complement(726730..727680)         PHAGE_Bacill_BCD7: thymidylate synthase; LSA_07500; phage(gi422936069)               4e-86               MLEDAYLNLARFVLENGHKKEDRTGTGTISYFGQQMRFDLSQGFPLLTTKSVPFRLIKSELLWFLRGDTNIAYLLKNNNHIWDEWAFERWVNSDEYTGPDMTDFGIRSQKDSEFKKQYLAQKKLFCQMILDDEIFAKKFGDLGLVYGSQWRKWKTSTGETIDQIKKVIETIKTNPNSRRMIVSAWNPEDVDDMALPPCHTMFQFYVNDGKLSCQLYQRSADIFLGVPFNIASYALLTSLIAKECGLEPGDFVHTLGDAHIYLNHVDQINEQLSRTPFKAPKLWLNPEKESIFDYDMDDIKIEDYKHHSAIKGAVAV
complement(727700..729607)         PHAGE_Parame_1: hypothetical protein; LSA_07510; phage(gi9632181)                    3e-23               MEVVMVETLRADKLTKTYGEKVLFKNLDFIINENDRIGLIGTNGSGKSSLLNAIAETDHDFTGNIITSKAYRIGYLQQQPDLPEDMTVMESVFAGKQKVFKIIRHYEDALNDYSNHPDNQEFERRYLAAEAKMNEDDAWNTESRVKTILTQLKITNMDQKIGTMSGGQQKRVGLAQVLIQSPNLLLLDEPTNHLDFDSIDWLEQYLSSYKGSLIVVTHDRYFLDQVSNHIWELSFGGLYEYPGNYQTYVAKKAELVDEQLATSHKEQQLYKQELKWMKTGAKARSTKQNARIERFNQLEDKVKEGTPLDGELDIAMGQQRLGKKVIEINHVSLEIANKPILRDFSMLIQNGQRIGISGENGAGKSSLLNAIAGILPIQSGSIEIGETVKMAYYTQQMETIPEDKRVISYLTDIGQNIVDADGNKISVTNLLEQFLFPKFMHGTLIRKLSGGEKRRLYLLKLLMEQPNVLLLDEPTNNLDIATLTVLEDYIKHFNGTTITVSHDRYFLNKVADRLLIFEGNTKIERYNGIFTDYLSSKKEKKVRNETKVKLDNKVEARSNSTKKKTKLTYAEKIEFDGIEAKIEKNENEIKQVTEEMQNNGEDYNKLAELQRKLDDLNKESDDLVARWEYLSEFAE
complement(729603..730832)         PHAGE_Mycoba_Myrna: gp28; LSA_07520; phage(gi203454630)                              7e-28               MKEGNKMKIENLPSEFIDARKVLQVIEQNGFEAYFVGGSVRDTLLNLPIHDVDMATSAYPAEIKKFFKRTIDTGIEHGTVTVMFDHKGFEITTFRTESGYQDFRRPDKVTFIRSLKEDLKRRDFTINAFAMKENGEVIDLFNGMEDLQHHLIRAVGDANQRFNEDALRMMRAVRFGSQLNFKIEEKTFAAIKANCQLLKKIAIERINVEFIKMMLGISPSQGLQEILGTDLFEYVPFFNQYLSELKHLANLDLSNHLTNEIQVWSLLAFELNLKQSQIRKMMKLWKCSNKMTENVLQVVKGIKMLQNKQIVSLFIYQIGLNNLLNANHVMEIYGLNQGEEELENAFNSLPIKQKAELNVNGGSLIKAGFKPGPQLGKVLNDLELMVINGEVENDQITLINKAKELANEN
complement(730899..732161)         hypothetical protein; LSA_07530                                                      N/A                 MSNSEKALEALQNNDLDEYQKNLKNALDQDNDDMLFSLAEELYSLGFSDDALKIYRQLLKKYPDEDEIRTYIADILIAKDDTDGALEVLNEIKPDTSYYINALLVEADLYQTQDLFVVSEHKLIEAEKLAPDEPIVKFALAELYYSEGKYESAIKLYLNLIKQGQLSISNVNLVERLGVSYAHVGNFENAIGYLEQIKPIDMTPDVLFETGFTYLQLGNYAKSIEIFEMLRDTDNQYASLYIYLGEAFEKDNKPEDALRTYQEGLSVDEYNVILYLKAADIAAKLGKMDLTIKYLEKGNQVNPDNMEVVTKLSEIYVKDGQFEKDVDFLSDYLSDNNLVPQLYWDLAISYDHMNKIKQASENYQKAAMNLKDNPDFLKNYIFFLRENGKVNESIEFLKQYVNLVPDDDEMVYMLQDLETK
complement(732226..732501)         PHAGE_Bacill_36: DNA-binding HU protein; LSA_07540; phage(gi156564019)               2e-28               MANKAELVDDVAKTTGLTKKDATAALDAVFEAIQDQLAKGERVQLIGFGSFEVRQRAARKGRNPQTGKEIEIPASKVPAFKPGKALKDAVK
complement(732688..733995)         GTP-binding protein engA; LSA_07550                                                  N/A                 MAQPTVAIVGRPNVGKSTIFNRVAGERISIVEDTPGVTRDRIYSHGEWLGHNFNLIDTGGIEVSDQPFIKQITAQAEIAIDEADVIIFMVNGKQGITDADERVAQILYRSNKPVVLAVNKIDNFESRADIYDFYSLGFGDPYPISGAHGLGLGDLLDEVIKNFPEAPEEKKDNSIRFSLIGRPNVGKSSLVNAFLGDNRVIVSDVAGTTRDAIDSKFVHDGQEFTIVDTAGIRKRGKVYEKTEKYSVMRAMKAIDESDVVLVVLNAEEGIREQDKRVAGYAHEAGRGVIIVVNKWDALKKDNHSQQQFEAAIRAEFQYLAYAPIVFVSAKTKQRLSQLPDLIEKVNINHKKRISSSTLNEVIMDAVAMTPTPTIKTRKLRIYYATQVATQPPAIVLFVNDPELLHFSYRRYLENQIRKNFDFTGTPIRIIPRSRK
complement(734062..735279)         40S ribosomal protein S1; LSA_07560                                                  N/A                 MMSENENKQLLDALDNIKEVNVGDVVTGEILAVDNDSQLMVGIDGTGVEGVIPSKEVSATMESNPTDKYKVGDTVKVVVVSKIGDDKEGGSYLLSIRRLEALKVWDEIKEKADKGENITVKVTRPVRGGLVVNADGVRGFIPASMITDHFVSDLNQYKGAELEVKIIEVVPEDNRLILSHRAVAEKDRKEAREKIMGSLKVGDIVEGKVARLTNFGAFVDLGGIDGLVHVSEISYDHVSKPSDILKVGEDVKVKVLAIEPERNRISLSIKQLQPGPWDDIEEKAAVGSILDGTVKRLVDFGAFVEVLPGVEGLVHISQISHKHIDKPSDVLKSGEKIQVKVLSIDPEEHRLALSMKALEEAPKEENKKAPKKNVDDNSTSNAPEEESGFTLGDILGKDIDNDSEE
complement(735367..736071)         Cytidylate kinase; LSA_07570                                                         N/A                 MKNIRIDIMHKKELQVAIDGPASAGKSTVAKIVAKNFNYIYVDTGAMYRSITYKAIQNNINLNDENKIVELLHKTKITFTPGNPVQHVFIDGEEVTDKIRSEKVTNNVSTVAALPLIRRELVKRQQEIAKDGGVIMDGRDIGTTVLPNADLKIFLIASVKERAERRYIENQKKGINVTLEELKKEIEVRDYKDSHRKVSPLKKAKDAIEIDTTSLSIEQVSDKISSLIKKRIQK
complement(736068..736628)         PHAGE_Staphy_phiMR11: hypothetical protein; LSA_07580; phage(gi162290109)            1e-05               MDKNGNKKPWENSFSDDNAQEEGYLSRIALRKQKENFKLILSVLVSIVALTAIFSLVFGMSKQNDVQQYQSISKKKTKKVTKPKKKVTKPQKNNESKHDTEQNTSQNTNETQTTSNDQESSGEQNPNDTNHDTSQDKDNAEYVTVNPSEGIYRLATNAGISVSQLQALNGLNKNSVITPGQKLRIK
complement(736681..738096)         PHAGE_Acanth_mimivirus: putative ATP-dependent RNA helicase; LSA_07590; phage(gi311977672)     7e-56               MNKTNVKQILKERFGFDSFNPGQEETIQALQSGKNVLSILPTGAGKSLIYQIYSYLINKPIVIVSPLLSLMNDQVERIRYLGSSNVVAINSEHDWKERKSILSNLEHYRYIFISPEMLNQKEINQSLAKLNIGLFVVDEAHCISKWGIDFRPDYLSLKSNLKKLGNPQTLMLTATASKKVQDDIIKKIGIDNCSRIIESVNRPNIFLAVQKTETEMDKQSNLIYLLTKLKGPGIIYFSSKKMANLMSDMINLKTKLKSAPYHADLSNSDRFKIQHQFMDNELDVVCATNAFGMGIDKSDIKFVIHYHLPKDLESYVQEIGRAGRNGQPSIAILMYSDGDEQIALNLLESSFPTERDYENYNKHKFNYLDEQTKRLLDFYYQHGYSESQIKQIFKENHSLKVKDLYKLVDYINYVGCRRKFIQANFDENFDMHDDDCCDFQHDQIDLTPYEYFITQPTNEFSDWKSIINQLF
complement(738089..739132)         hypothetical protein; LSA_07600                                                      N/A                 MKLNEELALFLLDKHQPRRKRLLENLLVGKKTVATIYWALRYQILGYLGLGRYMEITKLDFTNLEKQKLVIKDENQAYVLTDKGYILRSKILGDNLKFNWQRNFQSFNFMRFKSRLLLFIQVISEYQHNQRKYYPVNVSDSEMNFVKYYFKKIDRESIAFSLKNELLNFFSVINNENLANQLANELVGFQKNGRTLFQLANEFDESLIKVYLSDIDVISQLIDFVVNNQESVIFPLLKGLHQNVVSDSAIMTLNQYLINHDISKVALKRHLKESTIYEHLMEIAIYFPINKFPYSDFINDVQIEELKEQLSDDIDKWNYENLSLKQILSFFQFRLVEIYLTKVGNDE
complement(739153..739884)         Ribosomal large subunit pseudouridine synthase B; LSA_07610                          N/A                 MSDRLQKVMAHSGIASRRACEKLIETGHVRVNGKVVNTLGVKVSPADRIEVDHTTIKTEELVYFVLNKPRGIITSSDDEKDRKTVLDFFKHKVSERIYPVGRLDYDTSGVLLLTNDGSLDFKLTHPKHQIDKVYIAKVDGIPDEKDLNQLRRGVKLERNLKSAPAEAKVIKKVGEDEGNSLVELTIHEGRNHEVKKMMSSIGHPVEKLKRISFAGIQADNLEVGKWRPLKKREIRDLFELVND
complement(739877..740452)         Segregation and condensation protein B; LSA_07620                                    N/A                 MLIKKIEALIYISGDLGVSVKELEKLIDAPKAAIRENLIKLQEEYQKYDSALEIIQNGDIFQLVTKIEYNDLIQKYVKTDENLLSQAALETLTIIAYKQPLTRVMVDDVRGINSSVSIRNLLNLGLIKESGKVDEPGMPSLYRTTDLFLKAFGLNNIKQLPELNESESFNQQKEEIFNHNIGLLENEVNNE
complement(740456..741208)         Segregation and condensation protein A; LSA_07630                                    N/A                 MSLLLLNGSVIMNNDEIKIHLNDFDGPLELLLHLIKQSKMDIYDINIKDITSQYVNLLNKMKKLNIDIAGEFFVMAANLMKIKSQMLLAEETEQETEEDPREDLVAQLIEYKKYKRAALVLKQKERERNHLHSRGIYINRNENSIEEDEFQISLLKNAWEKLIRRKAITQDVPVGKINEWNYEIPNQMELIENKLKDSLKHEIKFCDLLKSNAPLEELVTDFLALLTLIKQKRVWIMQVKIDDDIIIKGV
complement(741162..741524)         hypothetical protein; LSA_07640                                                      N/A                 MLYRYQKEYEKIVLGILSLSQERSNLEYLKQEIDWYCASDNRNLFIWKDQFNNWAGVIGVETKYDFILLRRITLTPDVNTMFNIFHVLDNLQKIYPDKQIVGTLKNKLIIAKWERNNEQR
complement(741535..742422)         PHAGE_Achole_L2: integrase; LSA_07650; phage(gi9626516)                              7e-18               MQDQINDYLHYLLVERGLSNNSIKSYQQDLKQFMVYLKDNHYEEFSSIDQYTILSYLEFEKNSGKARNSVIRLVSTLRKFFQYLKRFNKIKENPMNRIDTPKKGSHLPAVLNDNELSKLMSIPDFNNKYGIRDRTILETLYATGLRVSELVNLKLADLHLEMNLIQTIGKGDKERIVPIDDVAINWLNKYLNQVRPVLLKNRTSKYVFLNAHGSKISRQSVWKKIKGYVVIADIHKDVTPHTLRHTFATHLLENGADLRTVQELLGHSDISTTQIYTHVSQEHLRQEYQKYHPRA
751696..751709                     attR                                                                                 N/A                 TTTTACTTTTTGCT
751720..751731                     attR                                                                                 N/A                 ATTTTTTTATTT