gi|316939066|ref|CP002416.1|  Clostridium thermocellum DSM 1313, complete genome. [asmbl_id: NC_000000].3561619, gc%: 39.15%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
2769859..2769871                   attL                                                                                 N/A                 TTTGCATATAAAA
2782167..2782178                   attL                                                                                 N/A                 CTCTTTTTTATT
2783589..2783600                   attL                                                                                 N/A                 ACCCTTGACATC
complement(2783692..2784843)       PROPHAGE_Escher_MG1655: IS150 transposase B; Clo1313_2369; phage(gi16131429)         9e-27               MEKRKHFTPEQKAKIVIEVIKGERTLNEIAAEYGIHPNLLSRWKTEFISNAGRVFSKETDEVEKVKQSYEKEKDELLKQIGQLSYEVAWLKKNLASSKSREDRMKMIDRNEKKLSITRQAELLSLNRTSVYYKPAPVNEEEYLIKRIIDEIYASYPEYGYRRMTSILNKDYHIHINRKRTRRYMREMGIHGFCPGPNLSKRIHGKNLYPYLLRNLKIDHPNQVWSIDVTYCRMKRGFMYMVAIIDWYSRYIVGFELSNTLDKTFVIEAIQKAIKRYGKPEIMNSDQGSQFTSDDYINLLKNNGIKISMDGKGRALDNQRIERFFRSYKWEKLYLEECETVQQLRQITKEYVEHYNHRRPHQSLDYKTPAEYYFGGYDQLLAVV
2785207..2785218                   attR                                                                                 N/A                 ACCCTTGACATC
complement(2785392..2786360)       Protein of unknown function DUF2971; Clo1313_2370                                    N/A                 MGKSLSEKYEGIIPKTIFHYTSFEKFKCILRYGTWRFKLSTQSNDLLDTTYIVDIIKELKIQNKNLPDYQRELLEFLMGYFKQEGYERQFLSYVTCFTGKADSRLLWDAYTINRPAISEKEERNYNGVCIGVNRDKLIELLQTEKPDFCDTGFLAPVYYTPYQQVTALDFLCNNALDTFEKVKDDKDQTQEIIPPIRSAYSIQIGDYIGRPHFFELKLKKSFVKTALLYYIESVEKLAPFLKHQFWEEENEYRAAFSLHKSKKPVEDYIDIKISEELIDFIILGPTFSDKEEGDIQSIKDAKLDFNKLNKKHSIGTGIIRMG
complement(2786450..2787190)       HhH-GPD family protein; Clo1313_2371                                                 N/A                 MAEHLLVTIGKARFSDSQRHLIPFVNDIEQDKFLNDIENTPHAFVLACLMDRQIKAERAWSIPFRIREIIGSFKIDDLASVSLEEYKNIFNRNVLHRFNDTMAEVFYSAVQDIKVKYNGDASRIWSNNPSSAKVVYEFLQFKGSGKKIATMAANILARQFKIPFSDYYSIDISPDVHILRVMRRTGLVDNNADLDSIIYKARELNPEFPGIIDFSCWEIGRTWCRPNNPNCSECIINSECKKVIQD
complement(2787235..2787636)       hypothetical protein; Clo1313_2372                                                   N/A                 MDIKIDSLIPYDSLKTNIDHVFSVVDKNGKVVLLKDNKPVYIVLKYDENNLADTGIGMQEMPNFTLHEAMKIVLSEAENKTMHAAELADEIYRRRLYLKKDGSKAEYTQIRARCGHYPDMFEALPGNRIKLKD
complement(2787675..2788505)       PHAGE_Clostr_phiSM101: HNH endonuclease domain protein; Clo1313_2373; phage(gi110804050)     3e-06               MSSFCKFKIGQVVTHSDIIAEFKCGNMGGMRRSKATNSLVIISDHTKGLYEDKWFGDVLHYTGMGKNGDQDLNFMQNKTLAESDRNGVEVHLFEVLVPTEYIYRGLVSLAGKPYQEIQKGEDGVPRKVWMFPLKLQTGSQAIPEESFIKYIKEKEKVAEKLTLNELKERAEQNESDKVSSRKVTSNVFIRDAFVAEYAKRRANGVCQLCGQKAPFNNKEGIPYLECHHIEWLSEGGSDTIENTVALCPNCHRKMHILNLSSDKEKLKIQAKIRLSK
complement(2788498..2788893)       PHAGE_Entero_vB_KleM_RaK2: putative MutT/NUDIX hydrolase family protein; Clo1313_2374; phage(gi422936956)     5e-06               MNRIRVAAGVITDNDKVLITRRAPKENFAGGWEFPGGKIEANETPEDCLIRELKEELNIDVSIDKFCTEVTHDYGNININLIAYYCTITDGTIQISVHDKYKWVRIIDLLKFELLPADILIAKKVMEDYYE
complement(2789134..2790183)       PHAGE_Spirop_R8A2B: putative transposase; Clo1313_2375; phage(gi9626114)             9e-15               MSQHNNTTKERHFKHLNEKERYQIEILLKDGKKPDEIASILGRHRRTIEREIVRGTVKLMNSDLTYSATYCADVGQRKYEQAAINKGAGLKIGHDHKLANYIEKRIKEDKYSPDAVIGEIRAKGIEFKTSICTKTLYNYIDKGVFANISNKDLPIKRNKKKRKYQKVRIAKKNLRGTSIEERPSQIEKRDEYGHWEMDCIVGKRGERGATLLVLTERSTRQEIIRKMPDKTQASVKKEIDKLERKYGKNFSKRFKTVTVDNGSEFLNSTELEASILNPKNKRFRLYYAHPYSSWERGSNENANKLIRRFIPKGTDIGKFTHREIQRIEHWINNYPRRIFGYRTANEMAA
2790249..2790260                   attR                                                                                 N/A                 CTCTTTTTTATT
complement(2790364..2791932)       PHAGE_Geobac_E2: putative recombinase; Clo1313_2376; phage(gi148747753)              2e-34               MTTRNVTVIPARKRIGNSANAEELPKLRVAAYCRVSTDSEEQATSYEAQIEHYTNYIKSNPEWELAGIFADEGITGTNTKKREEFNRMIEECMQGKIDMIITKSISRFARNTLDCLKYIRQLKEKNIPVYFEKENINTLDSKGEILLTIMASLAQQESQSLSQNVKLGIQYRYQQGKIHINHNRFLGYTKDKDGNLVIVPEEAEIVKRIYKEYLEGSSMLQIARGLEADGILTGAGNPRWHTSTINKILRNEKYIGDALLQKTYTVDFLSKKRVPNNGIVPQYYVENSHEPIIPREIFMQVQEQLVKRRCVHISKNGKKRNYSNNHPLSQMVFCGNCHEIFRRVHWNNRGKKSIVWRCVSRLENTGLFCTASTILEDTLKEKIVEAINVAVSGKNSFLAILKKNIETVLSVDLDETTADIDKRLEELQTELIQKANSKEAYDNIVNEIYRLRDLRQETLSRNALRQDKRDRIAEMTDFLNTQTGDITEFDDKLVRKLVEKAIAYDDRIVVEFKSGLEIEVNL
complement(2791895..2792350)       PHAGE_Entero_phiFL3A: integrase; Clo1313_2377; phage(gi281416214)                    1e-04               MSHIPFGYTIQNGRAVINEEEAVKIEKLFEAYLSGLSLTEAAQKAGIKRYHTSIARMLADKRYVEDKFYPPIISKDTFEKAQLERRRRAEALGRIYEHKGNEKKCLNFKFHASMPDNLYDDPFQQAEYAYSLIKSEVILDDNQECYGNSCP
complement(2792350..2793918)       PHAGE_Bacill_WBeta: putative site-specific recombinase; Clo1313_2378; phage(gi85701406)     6e-38               MRKVTRIDGNNALQAFKPKVRVAAYCRVSTDSDEQMASLEAQKDHYESYIKANPDWEFAGIYYDEGISGTKKENRTGLLRLLADCENKKIDFIITKSVSRFARNTTDCIEMVRKLTDLGVFIYFEKENINTQRMEGELVLTILSSLAENESLSIAENSKWSIRRRFQNGTYKISYPPYGYDYVDGKLFINKEQAEIIKRIFSEALDGKGTQKIADGLNSDKIPTKRGSHWTATTIRGILSNEKYTGDVLLQKTYTDENFKRHYNHGEKDQYMIKDHHEAIISHEEFEAAQEILKQRGKEKGVIKGSSKYQKRYPFSGKIKCAECGSSFKRRIHGSGNRKYIAWCCTKHIKDASSCSMKFVREDAIHQAFVVMINKLIFGHKFILRPLLQSLKKTNYSDNITKIQEMETKIKENTERVQVIMGLMAKGYLEPALFNTQKNELLKEAAILKEQKEAIKRAIDGSQTILVEVEKLLKFATKAEKQIDAFDSEIFEDFIEEIIVFSQEEISFKMKCGLNLRERLVK
complement(2793980..2794198)       hypothetical protein; Clo1313_2379                                                   N/A                 MIEAANHLLYNPQETNYTKITQEEIQREVDYWRAYKILQRMLKAGLISEEEFNKIDKLNRKTFSPMYAQLMA
complement(2794252..2795256)       PHAGE_Entero_phiFL4A: endolysin; Clo1313_2380; phage(gi281416489)                    4e-09               MKLFTKYMTRNDCYTAGRKITPKGIMVHSTAVPGVMAAEWFSRWNKSYKAGEINRQVCVHAFVDDKEVWQYLPWDHRGWHAGGAANNTHIGFEICEPAGFSYKSGAVMVGYDAAKQEDYFRKAWQNAVELCVMLCKKYGLNENDIICHSEGYKLGIASNHADVMHWFPKHGENMDTFRKAVKKALENSTDTNTDIGIGDMVEFKDSVKNYYPGSVEVPTWVKNDYYHRVTQTLYKGKPVIKGGKECVLLGKKVKKSGGQEIAGINTWVAKENLVIVNSIPDNKGNRTYTVQKGDTLWRIAEKELGRGTRFPEIKKLNGLTSDTIYPGQVLKLPE
complement(2795253..2795672)       PHAGE_Bacill_WBeta: phage holin; Clo1313_2381; phage(gi85701395)                     8e-29               MKTVWNWAQAVFTAIGGFLGWFLGGLDGFLYALIAFVAIDYVTGVMCAVVDRKLSSEVGAKGIFKKVLIFVLVGVGHIIDSQVLGNGGAIRTAVIFFYLSNEGVSILENAAHIGLPIPEKLKNALEQLHGHSNEEDEKK
2795700..2795712                   attR                                                                                 N/A                 TTTGCATATAAAA