LOCUS NC_015967 3137 bp DNA circular BCT 01-SEP-2011 DEFINITION Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17202, complete sequence. ACCESSION NC_015967 VERSION NC_015967.1 GI:345301886 KEYWORDS . SOURCE Rhodothermus marinus SG0.5JP17-172 ORGANISM Rhodothermus marinus SG0.5JP17-172 Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; Rhodothermaceae; Rhodothermus. REFERENCE 1 (bases 1 to 3137) AUTHORS Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Chertkov,O., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Gladden,J. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of plasmid 2 of Rhodothermus marinus SG0.5JP17-172 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3137) CONSRTM US DOE Joint Genome Institute NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (31-AUG-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3137) AUTHORS Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Chertkov,O., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Gladden,J. and Woyke,T. CONSRTM US DOE Joint Genome Institute NCBI Genome Project US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (24-AUG-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP003031. URL -- http://www.jgi.doe.gov JGI Project ID: 4091627 Source DNA and organism available from John Gladden (JMGladden@lbl.gov) Contacts: John Gladden (JMGladden@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Rhodothermus marinus SG0.5JP17-172 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Hot spring, Marine num_replicons :: 3 ref_biomaterial :: Missing biotic_relationship :: Free living trophic_level :: Heterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi08211 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Salinity :: Halophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3137 /mol_type="genomic DNA" /db_xref="taxon:762570" /strain="SG0.5JP17-172" /plasmid="pRHOM17202" /organism="Rhodothermus marinus SG0.5JP17-172" gene complement(102..2930) /locus_tag="Rhom172_2917" /db_xref="GeneID:11107517" CDS complement(102..2930) /locus_tag="Rhom172_2917" /protein_id="YP_004826542.1" /transl_table=11 /note="PFAM: TrwC relaxase; KEGG: acr:Acry_3619 exonuclease V subunit alpha" /db_xref="GI:345301887" /db_xref="InterPro:IPR014862" /db_xref="GeneID:11107517" /codon_start=1 /inference="protein motif:PFAM:PF08751" /translation="MIRGVLISRASVQRQLDHMAAVPGRQDVVWHGIALSHDGLQGIA REGKLSVAGTGARLLQLPAQVSTKQATALILGHQWDGVDIGGRQVCRPMYGIVWGADK TISQLLAHEQLRPLVLEAMHEAVQKALAETERLLWTRAGKGGREAVPVRGVLALYSIH MTSGDGSPHLHVHIGLRATAPSVDGRWRTLDPRAVFGLWKRTLDGAIGRHLYQALQQR GIHVDEHVLVGSTWTPAIRSLTPHSERLSRRRQQVLEALATLADDPTWRQNLVAWRIT RRDVALEAVEHGLDRMLRDPEQARRVAAVWGIPEGEIEKALGRTLPEAPPLKKALFRY AEAVRMRDAQVRLQTARQIFGELQGHIRRWCVGDITAALAYHTDAASATALTYWLLRD WQHLGLIQTRQSLSAAVFSRLLKGEITSTTELRAVFGPHAYVVTTRQLEEEQALYEKA LGLARARRQPILTNAPAHFTPEQRAALDVLRRGRALSVVQGVAGAGKTTLLHPLVEAA QQQGLRVQVLARNAIIARELGEELGVPSSTLETATRQGLRPRQPTLLIVDEGGVVDLH HMQALLEAASQPHMQLVLLGDRQQTQPIDQRAAFAIVAAAAARAGQLRQLRTSFRTQA WQAEHEALRRALSPQHAQKAVAMAGADGRIYGSTDLTTAIRQAVDWWQALSRRESTVI LSPTNELAAAAATEAQSRLGITIDPRTRLRWGQRCGIGDTVRIRFNRHDLGLLNGTTA RVVDIDQDGITIEHRGRRLYLDHGWTAEHVELAYALTIDSAQGLTVDRAIVLATETGH SRLYTAATRGRQAPVWVVVHDEEETPDQALERRLQRDDIARTGHEHVGQRIGKSTSPE KERLLAILQRLEEHDLIDPDLARLYRARILNDATRPRAKRFIELHVQLIQQAQGRRDV LRLVRTARYEEAQRLLERGRNRDDGLEL" /product="TrwC relaxase" ORIGIN 1 tttgctggct cgaggcttgt cttggcggac tgctcgagcc agcttttttt ttttttcagt 61 tcagcctgtt aaggactgca ttggggaatg agttcccgtt atcagagttc cagtccgtcg 121 tcgcggttgc ggccgcgttc gagcaggcgc tgggcttctt cgtagcgggc cgtgcgcacc 181 aggcggagca cgtcgcgtcg gccctgggcc tgctgaatga gctgcacatg cagctcgatg 241 aagcgcttgg ctctgggtcg cgtggcgtcg ttgaggatgc gtgcccggta gaggcgggcc 301 aggtccggat cgatcaggtc gtgctcctcg aggcgctgta ggatggccag caagcgctct 361 ttttcgggcg acgtgctttt tccgatgcgc tggcccacat gctcgtgccc ggtgcgggcg 421 atgtcgtcgc gctgcaggcg tcgctcgagc gcctggtcgg gcgtctcctc ttcgtcgtgc 481 accaccaccc agacgggcgc ctgtctgccg cgcgtggcag cggtgtacag gcggctgtgg 541 ccggtctccg tggccagcac gatggcccgg tccacggtca ggccctgcgc cgagtcgatc 601 gtgagcgcgt aggcgagctc gacgtgctcc gctgtccagc cgtgatcaag atagagacgg 661 cggcccctgt gctcgatggt gatgccgtcc tggtcgatgt ccacgacgcg ggcggtggta 721 ccgttgagca gccccaagtc gtgcctgttg aagcggatgc gcacggtgtc gccgatgccg 781 caccgctggc cccacctcaa acgcgtgcgt gggtcgatgg tgatacccag gcggctctgt 841 gcttcggtgg cggcggcggc ggcaagttcg tttgtggggc tcaggatgac tgtgctttca 901 cggcgggaca gggcctgcca ccagtccacg gcctgtctga tagcggtagt caagtccgtg 961 ctgccataga tgcggccgtc tgcgccggcc atcgcgacgg ccttctgcgc gtgctgcggg 1021 ctgagtgccc ggcggagcgc ctcgtgctcg gcctgccagg cctgcgtgcg gaagctggtg 1081 cggagctggc ggagctggcc ggcgcgtgcg gcggcggccg ccactatggc gaaggcggcc 1141 cgctggtcga tcggctgcgt ctgctgccgg tcgcccagca gcacaagctg catgtgcggc 1201 tggctggccg cttcgagcag ggcctgcatg tgatgcaggt ccacgacgcc gccttcgtcc 1261 acgatcagca gcgtgggctg tcgtggccgg aggccctgtc gggtggccgt ctccagcgtc 1321 gaagacggca cgccgagctc ctcgccgagc tcgcgtgcga tgatcgcatt gcgggccagc 1381 acctgcacgc ggaggccctg ctgctgcgcg gcttcgacaa gggggtgaag cagcgtcgtc 1441 ttgcccgcgc cggcgacgcc ctgcaccacc gaaagcgccc ggccgcgtcg tagcacatcc 1501 agcgcggccc gctgctccgg ggtaaaatgc gccggcgcgt tggtcaaaat gggctgtcga 1561 cgtgcccggg caagccctaa cgccttttcg tagagcgcct gctcctcctc gagctggcgc 1621 gtggtgacga cgtaggcgtg cggcccgaag acggcccgaa gctcggtcgt gctggtgatc 1681 tcgcctttga ggagccggga gaaaacggct gccgaaaggc tctgccgggt ctggatcagc 1741 cccaggtgct gccagtcacg caagagccag taggtgaggg cggtggcgct ggcggcgtcg 1801 gtgtggtagg cgagggccgc cgtgatgtcg ccgacgcacc accgccttat atgcccctgt 1861 agctcgccga agatctggcg ggccgtctga aggcgcacct gggcgtccct catgcggact 1921 gcttcggcat agcgaaaaag tgcttttttc agcgggggtg cttcggggag cgtgcggccc 1981 agcgcctttt cgatctcgcc ttcagggatg ccccagacgg cggccacgcg gcgggcctgc 2041 tcgggatcgc gcagcatgcg gtccaggccg tgctccacgg cctccagtgc tacatcccgg 2101 cgcgtgatgc gccaggcgac caggttctgc cgccaggtcg ggtcgtcggc cagcgtcgca 2161 agggcttcga gcacctgctg ccgccggcgc gacagacgct cgctgtgcgg ggtcaggctc 2221 cggatggcgg gtgtccaggt ggagcctacc agcacatgct catcgacgtg gatgccgcgc 2281 tgctggagtg cctggtatag gtggcggccg atggcaccgt cgagcgtacg cttccagagg 2341 ccgaagacgg cgcgggggtc gagcgtgcgc cagcggccgt ccacgctcgg ggctgtggcg 2401 cgtaggccga tgtgcacgtg caggtggggg gagccgtcgc cggaggtcat gtggatgctg 2461 tagagggcca gcacgcccct gacggggacc gcctcccggc cgccctttcc ggcgcgggtc 2521 caaaggagcc gctccgtctc agccagcgcc ttctggacgg cttcgtgcat ggcctcgagc 2581 accagcgggc ggagctgctc atgcgccagg agctgactga tcgtcttgtc ggcgccccac 2641 acaatcccgt acatgggacg gcacacctgt cggccgccga tgtccacgcc gtcccactgg 2701 tggccgagga tcagggccgt ggcctgcttg gtcgagacct gcgcggggag ctgtagcagg 2761 cgtgcacccg tcccggctac agagagcttg ccttcgcggg cgatgccctg cagcccgtcg 2821 tgcgacagcg cgatgccgtg ccagaccacg tcctgacggc cgggcacagc cgccatgtgg 2881 tcgagctggc gctgcacgct cgcacgcgat atgagcacgc cgcggatcat ctcacccgaa 2941 agggtgtctg tgtgcttgct tgcctttgac gccagcgatg cgccgagagt tccagcacca 3001 gcggtcggtg aagacaaacc acccccttgg acggactacg gcttggaatc ggggtcgagg 3061 aaaactttcg cctgccctgt cgggcttgga actgcttgct tgatgtgagg ttgatctgca 3121 tagcgatggt ttcgctt //