LOCUS NC_015699 7047 bp DNA circular BCT 24-JUN-2011 DEFINITION Lactobacillus reuteri SD2112 plasmid pLR580, complete sequence. ACCESSION NC_015699 VERSION NC_015699.1 GI:338202351 DBLINK Project: 55357 KEYWORDS . SOURCE Lactobacillus reuteri SD2112 ORGANISM Lactobacillus reuteri SD2112 Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. REFERENCE 1 (bases 1 to 7047) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-JUN-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 7047) AUTHORS Muzny,D., Qin,X., Buhay,C., Dugan-Rocha,S., Ding,Y., Chen,G., Hawes,A., Holder,M., Jhangiani,S., Johnson,A., Khan,Z., Li,Z., Liu,W., Liu,X., Perez,L., Shen,H., Wang,Q., Watt,J., Xi,L., Xin,Y., Zhou,J., Deng,J., Jiang,H., Liu,Y., Qu,J., Song,X.-Z., Zhang,L., Villasana,D., Johnson,A., Liu,J., Liyanage,D., Lorensuhewa,L., Robinson,T., Song,A., Song,B.-B., Dinh,H., Thornton,R., Coyle,M., Francisco,L., Jackson,L., Javaid,M., Korchina,V., Kovar,C., Mata,R., Mathew,T., Ngo,R., Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Simmons,D., Wilczek-Boney,K., Hale,W., Jakkamsetti,A., Pham,P., Ruth,R., San Lucas,F., Warren,J., Zhang,J., Zhao,Z., Zhou,C., Zhu,D., Lee,S., Bess,C., Blankenburg,K., Forbes,L., Fu,Q., Gubbala,S., Hirani,K., Jayaseelan,J.C., Lara,F., Munidasa,M., Palculict,T., Patil,S., Pu,L.-L., Saada,N., Tang,L., Weissenberger,G., Zhu,Y., Hemphill,L., Shang,Y., Youmans,B., Ayvaz,T., Ross,M., Santibanez,J., Aqrawi,P., Gross,S., Joshi,V., Fowler,G., Nazareth,L., Reid,J., Worley,K., Petrosino,J., Highlander,S. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (06-JUN-2011) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP002848. Lactobacillus reuteri SD2112 Strain source, body site: Gastrointestinal tract Inquiries should be directed to microbe@hgsc.bcm.tmc.edu This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Versalovic, J. (Department of Pathology, Texas Children's Hospital, 1102 Bates Avenue, Suite 830, Feigin Center, Houston, TX, 77030, USA). Funded by by 'Genomes and Genetics at BCM-HGSC' (U54 HG003273). ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler Assembler v. 2.3.10192009 Genome Coverage :: 63x Sequencing Technology :: 454 ##Genome-Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7047 /organism="Lactobacillus reuteri SD2112" /mol_type="genomic DNA" /strain="SD2112" /culture_collection="ATCC:55730" /db_xref="HMP:00538" /db_xref="HOMD:tax_818" /db_xref="taxon:491077" /plasmid="pLR580" gene complement(join(6394..7047,1..1485)) /locus_tag="HMPREF0538_22304" /db_xref="GeneID:10865984" CDS complement(join(6394..7047,1..1485)) /locus_tag="HMPREF0538_22304" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="YP_004650765.1" /db_xref="GI:338202352" /db_xref="GeneID:10865984" /translation="MAIKIKDSSKTLSGKFDTYIKSQYKFLSLVHAGAINGLLTVTKP KDNKHKHNFKHQPILSDNGDLGYEQYYHLDMTDNVVIPHVTMVYSNGANTAGRVVYID NTRIAHSPLRELNEASKRTQTMVKVLDTAKQLQQIRSGSSEFCSYMTTLTIPNCNKDE LDQVVGSMSTRITAVIKALQDGYRNGNGLRLVDHNGRPVQILGAIVKIEITINQVKLK TCDSQGIFHPHIHIVLITANELALGPSRRILFHYWSNKNSDMILSRKAFNFKKAYSKN QMDSDDSTSIVAEATKYATKPTMYKLLPTIKDSNNLTSDDQFKLEIFCEVFKTIKGRQ LSRSYGLIRDATGFVNFLKNGIMVKYRGNNPMHGKHERISIFDAFMFGNYNDNKQIHV PDIMTTRNELIPGGNFNQVDLSDDELLYANKGLLSGATWELPDNIKWPSNNQKADEYK ELLTRFGFVQPGLGNIIDQLQSWIQTIDQRKDKVLHTVLDASERSFQYNDLLHKGEDV RRLVRILEDVCDQYGDDTTTLTTHDYSQIYRDVDLMQVMDAHHATLHYDSYGKPDDVT FDEPDVERRLVASYKKHDDVRFMSATAFLPREILIEYGVWLKHTPSEFIDNLASYTSH APELEIDTVSKMDAKTTQKWINKAFNVSSSNGPQIDFHTMFTSAKMSQVQADNNDDLD HLFDDGVGDDDDDDNTEINSLSDVFPDLKW" misc_feature complement(454..1047) /locus_tag="HMPREF0538_22304" /note="Replication protein; Region: Rep_1; cl02412" /db_xref="CDD:121293" gene complement(1978..2475) /locus_tag="HMPREF0538_22305" /db_xref="GeneID:10865978" CDS complement(1978..2475) /locus_tag="HMPREF0538_22305" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004650766.1" /db_xref="GI:338202353" /db_xref="GeneID:10865978" /translation="MDRHVWQRLATVVLAALVIFSINTFSPVGNGDGLGITTIQAKKK THQLPNLLDQQIAILVGLDINPNWVREQSAADSLIYGIVKPDDTVPAGINEDYSYLVT SNRDKEISLFFKADKKKVTIKYANHGEKLHTKTVPLSRLVEQSYRTKKQRQQVNKYAS ALRTE" gene complement(2965..3522) /locus_tag="HMPREF0538_22306" /db_xref="GeneID:10865983" CDS complement(2965..3522) /locus_tag="HMPREF0538_22306" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004650767.1" /db_xref="GI:338202354" /db_xref="GeneID:10865983" /translation="MIFDGPWDDDERYILDDRQLYFLKQAGERLSSQDFQDLKQENDD ELGFYSCTVDGELDRKKLPSSFLEVKVRVGRKLRSQIKQMVDDPDKLPEFGFRDYRGM TVTDCEYLSLLELPDEWLSNYLRYFMNYSGIHSDDVYVAASGRFKLVEIDNWKNVVPD YSDFSTVDLLQCDMNFLKAYIASIE" gene complement(3560..4057) /locus_tag="HMPREF0538_22307" /db_xref="GeneID:10865979" CDS complement(3560..4057) /locus_tag="HMPREF0538_22307" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004650768.1" /db_xref="GI:338202355" /db_xref="GeneID:10865979" /translation="MNTKNQVKTKTKTYTTSELASLCGVTVGSISVLIKKQNLKPVKT GQNNAKYYDAGVLKQLRLHYAKSKPKRDKTNNTQDLRTQLAVAQSENQLLRDQLESAK STIEILRNELKIKNSQIDKLQDLTNQAQQLDLATHTQHQELLEQKSQPTDEPTKHKHG IFNWF" gene complement(4075..5568) /locus_tag="HMPREF0538_22308" /db_xref="GeneID:10865980" CDS complement(4075..5568) /locus_tag="HMPREF0538_22308" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004650769.1" /db_xref="GI:338202356" /db_xref="GeneID:10865980" /translation="MSSITFENSFQGSFRDMGESHISIHSGQHDNMVDGEDPIIELRG NSVSDSSWALMIAKATSQGVVSPKDWPEYNRKIPDKKRRKKDYNDYLLTLCSKPIKRL KATQTAKNTPKAQRTKISQELASVDRDHVLNDGSLWYVAKVDDRPDNVGKKEWREFEV EALTRFDKDPTYRMLNPGTYRSEIHLDERGEIHKQDLAVWFRPDSRGRVQYSKTSTIQ DVLLKLYGGNKDELDRRVSLVSEITNNIDKTPGQERADTKLWRSVKSNQQPTRMLHAG KRYNSAMITLWRYENVRILRDTALQVAKERGIDYQVSDRYETDGVHRSRDIYMQHQQA KDSLHGEQLKKKRAQYATGKLIDAINDIYRDTLKRDPGASESPLEQTNKIINHLNEIK EESKRIQRENDRQQQQLDQLKRQNELMKRQQFRWFELRLLIVNIIEKLWHLMFDRDLQ HDFTNDHQKWRDSMTNQVNKEMYNQLDQDQQKQLNAPNQSNGHNLER" gene complement(5877..6131) /locus_tag="HMPREF0538_22309" /db_xref="GeneID:10865981" CDS complement(5877..6131) /locus_tag="HMPREF0538_22309" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004650770.1" /db_xref="GI:338202357" /db_xref="GeneID:10865981" /translation="MKIFKKKCVLLEAAGRPLGERKLCKFYLHNIIAWYNRYVKSETF HENSLSFSIDDTLKCADFTGFFNFDGFTIEPRFDFILSLD" gene 6145..6276 /locus_tag="HMPREF0538_22310" /db_xref="GeneID:10865982" CDS 6145..6276 /locus_tag="HMPREF0538_22310" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004650771.1" /db_xref="GI:338202358" /db_xref="GeneID:10865982" /translation="MQVQIVTKIGPVYFPLTENKTASNGSTFRQKLTSKVGHFSVKK" ORIGIN 1 gctacgttca cttgcgtcaa ggacagtatg taaaaccttg tctttccgtt ggtcaatcgt 61 ctgaatccaa ctttgaagtt ggtcaatgat attacctagc cccggttgaa caaatccaaa 121 ccgagttagt aattccttgt attcatctgc tttctggtta ttagacggcc atttaatgtt 181 atccggtaac tcccaagttg ctcctgataa taaacccttg ttagcatata gcaattcatc 241 atcagacaag tccacctgat taaaattacc cccagggatt agctcatttc gagttgtcat 301 aatgtccggc acatgaattt gtttattatc gttgtaattt ccgaacataa acgcatcaaa 361 gattgagatt cgttcatgct ttccgtgcat agggttatta ccacgatatt taaccataat 421 cccattcttc aaaaagttca caaatccagt tgcatcacga atcaaaccat aggaccttga 481 cagttgccgg cctttaatgg tcttaaagac ttcacaaaag atttctagtt tgaattggtc 541 atctgacgtt aaattattag aatctttaat cgttggtaac aacttataca tcgttggctt 601 cgtggcgtac ttcgtggctt cggccacaat actagtacta tcgtcactat ccatttggtt 661 tttagaatat gccttcttaa aattgaacgc cttacggctc aaaatcatat cggaattctt 721 gttactccaa taatgaaaca gaatccggcg acttggcccc aatgctaatt cgttggcagt 781 aatcaaaaca atgtgaatat gcgggtggaa aatcccttgt gaatcacagg ttttcagctt 841 aacctgatta attgtgattt cgatttttac aatcgctccc aggatctgaa ccggccggcc 901 attgtggtca actagccgga gaccattacc attacgatag ccatcttgta aagccttgat 961 aacagcagta atacgagtag acatactacc aacaacctgg tcaagttcat ctttgttaca 1021 atttggaatg gttagagttg tcatgtacga acaaaattca ctactaccac tacggatttg 1081 ttgcaattgc ttagcagtat ccaaaacctt aaccatagtt tgtgttcgtt ttgaggcttc 1141 gttgagttcc cgcaatggac tatgtgcaat ccgagtgtta tcaatataaa ccacacggcc 1201 cgccgtatta gctccattgg aataaaccat cgtaacatgt ggaattacaa cattatccgt 1261 catatccaaa tggtaatatt gttcatatcc taggtcgcca ttatcggaca aaatcggttg 1321 gtgcttgaag ttatgtttat gcttgttatc tttgggtttt gtaaccgtta ataatccatt 1381 gattgcccca gcatgaacca gagacaaaaa cttatattgt gatttaatat atgtatcaaa 1441 cttacccgat aatgttttgc ttgaatcttt aattttaatt gccataatta aaagtccctc 1501 ccaaacaccg aatcagaggg tatttagaaa ggaccgttat tagtttcata gtcaatttta 1561 taattaacac ggttgcaatt cttagtaatc tactatataa taatagtcga taacttaata 1621 accactgatc agcacccacc agataagtcg ccaaactttt tacatctgtt aggtgcttaa 1681 gtgttttaat aagtatattt tattgaattt tagatgagtt gaagttgaga aattgctcaa 1741 ttttcaactc tttttttatt ataaccgatc atcaaaccac tgacaagtcc cgttctgacg 1801 ctatctcacg caatggcaca attagcaagg cttttcacaa aattaagaaa tttttagatc 1861 cattagaagc tctctagcgt aatttgaacg tataaccata cgataattaa aataaaaaat 1921 aattaagcta tgtaaagttt cagatattca taaccctaac ttgcggtgcc cgatcaacta 1981 ctccgtccgt agcgcgctgg cgtacttatt cacctgttgg cgttgtttct tggtccggta 2041 cgattgctca accagccggg acagcgggac ggtcttagta tgcagctttt cgccgtggtt 2101 agcatacttg atcgtcacct tcttcttatc cgccttaaag aatagggaga tctccttgtc 2161 gcggttacta gtaaccaggt aactatagtc ttcattgatc cccgctggaa ccgtgtcgtc 2221 aggtttcaca ataccataga tcaagctgtc tgcggcactt tgctccctaa cccagttggg 2281 attaatatcc agacccacca aaatggcaat ctgctggtcc agcaggtttg gcagttgatg 2341 ggtctttttc ttggcctgaa tggtggtgat accgagcccg tcgccattgc ctactggtga 2401 gaaagtattg atgctgaaaa ttaccaaggc tgccagtacc acggtagcaa gcctttgcca 2461 aacgtgtcga tccaacaatg tctcctcccc tgcctgaact caagaatagt aatattgatt 2521 agaatataat accatattta ggaattaaaa taaaattgtc ctagagggca atctagagaa 2581 cgtcaaatca cgaaaaccct tgatattagc gggtttccct attttagagg tcaaatttga 2641 aaacccttga taataaaggg atttcacaat tctttatttt tgcactaaaa aatgaaagtt 2701 ggatctgaca ctaatctgaa attttcatta tggttgtagt gtggttctga ttaatggagg 2761 gagagccggg ctctctccct ccaaacctcc ctctttgtga caaacatctg actgaacgtc 2821 tggatacgtt gggggagtag gctgtcacga ttattcggac tgtatcaaga gccaggctga 2881 aatctagtgt aatcccttga tatgcaaggc tttacaaggt tttgcctaaa aaaagacttg 2941 agtataacct caagtctttt tattttattc aattgaagca atataagcct tcaaaaaatt 3001 catatcgcac tgtaataagt ctacagtact aaaatctgaa taatctggca caacgttctt 3061 ccaattatca atttcaacta acttaaagcg tccagatgcc gcaacataaa catcatcact 3121 atgaatacca gaataattca taaaataacg taaataatta ctcaaccact cgtcaggtaa 3181 ttcaagcaat gataagtatt cacaatcagt aacagtcatg ccccgataat ccctaaaacc 3241 aaactcaggc aatttatcgg ggtcatccac catttgttta atttgagaac gtaactttcg 3301 gccaacccgc actttgactt ccaaaaagct tgatggaagt ttcttccgat cgagttcacc 3361 atcaacagtg caactataaa aacctagttc atcatcgttt tcctgtttta gatcttgaaa 3421 atcctgtgaa cttaaccgtt caccagcttg tttcaggaaa tacaattgcc gatcatctaa 3481 aatataacgt tcatcatcat cccaaggacc atcaaaaatc attattactt atcctcctta 3541 ttcttatcta caatagtttc taaaaccagt tgaaaattcc atgcttatgt ttggttggtt 3601 cgtctgttgg ttgtgacttc tgttctagca actcctgatg ttgggtatga gttgccaagt 3661 caagttgttg agcttgattc gttaaatctt gcagcttatc aatttgcgaa ttcttaattt 3721 tcaactcatt tcgcaagatt tcaattgtcg atttggcaga ttcaagttga tcacgaagta 3781 actgattttc agattgggca actgccaatt gtgttctcaa atcttgcgtg ttgttagttt 3841 tatcacgttt tggttttgat tttgcgtaat gcaaccgtaa ttgtttcaaa acacctgcat 3901 cataatattt tgcgttgttt tgtccagttt ttaccggttt taagttttgc tttttgatta 3961 aaaccgaaat tgagccaaca gtcacgccac aaaggcttgc caactctgac gttgtatagg 4021 ttttagtttt tgtttttact tggtttttag tattcatagt tcaaaacctc agttctatcg 4081 ttctagattg tggccgttgg actgattagg tgcattaagt tgcttttgtt ggtcttggtc 4141 aagttggtta tacatttctt tgttcacttg attagtcata gaatcacgcc acttctggtg 4201 gtcgttggtg aaatcatgtt gtaaatcacg atcaaacatc aaatgccata atttttcgat 4261 aatgttgaca attaacagcc gaagttcaaa ccatcggaat tgttgacgtt tcattagttc 4321 attctgacgt ttgagttggt ctagttgctg ttgttgacgg tcattctctc tctggattcg 4381 cttggactct tctttgattt cattcagatg gttaataatt ttgttagttt gctccagtgg 4441 gctctcagag gcccctggat cacgtttaag ggtgtcacgg tagatatcat taatcgcatc 4501 tataagcttt ccagtggcgt actgtgcccg cttcttcttc aattgctcac catggagtga 4561 atcttttgcc tgttgatgtt gcatataaat gtcacggctc cgatgaaccc catcggtttc 4621 ataacgatca ctaacctgat aatcaatacc ccgctccttg gctacttgca gagcagtatc 4681 acgcagtata cgtacattct catagcgcca taaggtaatc atggccgaat tataccgctt 4741 accagcatgt aacattctag ttggttgctg attggattta acagaacgcc ataatttggt 4801 atcggcccgc tcttggcctg gagttttgtc gatgttgttg gtaatctctg acaccagact 4861 aacacggcga tctagctcat ctttgttacc accatacaac tttagaagca catcttgaat 4921 ggttgaggtc ttgctatact gcacacggcc tcgactatct ggacgaaacc acacagccaa 4981 atcttgtttg tggatttcac cacgttcgtc caaatggatt tcagaacggt aagttccagg 5041 attgagcatt cgataagttg gatccttatc gaatcgagtt agtgcttcaa cttcaaactc 5101 acgccattcc tttttaccaa cattatctgg tcgatcatct actttagcca cgtaccataa 5161 cgacccatca ttgagtacat ggtcacgatc aacggaagct agttcttgac tgattttagt 5221 tcgttgagcc ttaggcgtat tctttgctgt ttgagttgcc ttcaatcgct taattggttt 5281 ggaacaaagt gttaaaagat aatcgttgta gtccttctta cgccgtttct tatccggaat 5341 tttccggtta tattcaggcc aatctttggg actaaccacc ccttgactag tcgcctttgc 5401 tatcatcaaa gcccagcttg aatcactgac cgagttacca cgtaattcaa taattggatc 5461 ctcaccgtct accatgttgt catgttgtcc ggaatgaatc gaaatatggc tctctcccat 5521 gtcacggaac gaaccttgaa atgaattttc aaacgtaatc gaactcataa aaaatcactc 5581 actttcttgt cttaataaaa tcttaagaag ttgctatgta ggtcgataca ggaagagcat 5641 aaggggatct gtcaaatata cccattttta acccccaaaa tcgaccattt ttgaaaggag 5701 taggttgcca tgctacgcta atcttttaac gtacttgaca aaattcggtt ggctttgaat 5761 attctagaat attctggaat cgtgaaactg attggcatca gtagaatttc acaaaaacgg 5821 acagtttcat gtttccaatg gttttcacct cttattaact gattttctgc atttttttag 5881 tcgaggctca atatgaaatc aaaacgaggt tcgatcgtaa agccgtcaaa attgaaaaat 5941 ccagtaaaat cagcacattt caaggtatcg tcaattgaaa aagaaaggct attttcgtga 6001 aatgtttcac tttttacata tctattatac cacgcaataa tgttatgtaa ataaaattta 6061 cataacttgc gctctccgag gggcctgccg gcggcttcaa gaagaacaca tttcttcttg 6121 aaaattttca ttattccgtt cgagttgcag gtccaaattg taaccaagat tggaccagtt 6181 tattttccgt taacagaaaa taaaacagca tcgaacgggt caacttttcg tcaaaagtta 6241 acgtcaaaag tcggtcactt ttctgtcaaa aagtgacgtg ctaccgccct ccacacctct 6301 acggtgttcc ggttggttga tgtgatacgg tctgacagtt cgacaagtcg aattgtcact 6361 ccgaatcaca tgatggattc acactcaaca tcatcaccat ttcagatcag gaaatacatc 6421 tgaaagtgaa ttaatttcag tgttgtcatc atcgtcatca tcaccaacac catcatcaaa 6481 aagatgatct aaatcgtcat tattatcagc ttgaacttgg ctcattttgg cactggtaaa 6541 catggtatgg aagtcaattt gtggaccatt cgatgatgaa acattaaagg ctttgttgat 6601 ccatttttgg gtagtcttag cgtccatttt gcttactgta tcaatctcta attcaggagc 6661 gtgagacgta taagaagcca aattatcaat aaattccgat ggtgtatgtt tcaaccaaac 6721 accatactca atcaagattt cacgaggtaa aaatgcagtt gccgacatga accgaacatc 6781 atcatgcttc ttataggaag ccaccaaacg gcgctcaacg tcaggttcat caaatgttac 6841 atcatcgggc ttaccataac tatcataatg tagtgttgca tggtgggcgt ccatgacttg 6901 catcaaatcc acatcacggt aaatttgact ataatcatga gttgttaacg tggtagtatc 6961 gtcaccatat tgatcacaaa catcttctaa aatccgtacc aaacgccgaa catcttcacc 7021 tttatgaagt aaatcattgt attggaa //