LOCUS NC_015461 6804 bp DNA circular BCT 14-JUL-2011 DEFINITION Gallibacterium anatis UMN179 plasmid pUMN179, complete sequence. ACCESSION NC_015461 VERSION NC_015461.1 GI:332290580 DBLINK Project: 66567 KEYWORDS . SOURCE Gallibacterium anatis UMN179 ORGANISM Gallibacterium anatis UMN179 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Gallibacterium. REFERENCE 1 (bases 1 to 6804) AUTHORS Johnson,T.J., Fernandez-Alarcon,C., Bojesen,A.M., Nolan,L.K., Trampel,D.W. and Seemann,T. TITLE Complete Genome Sequence of Gallibacterium anatis Strain UMN179, Isolated from a Laying Hen with Peritonitis JOURNAL J. Bacteriol. 193 (14), 3676-3677 (2011) PUBMED 21602325 REFERENCE 2 (bases 1 to 6804) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-APR-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6804) AUTHORS Johnson,T.J., Bojesen,A.M. and Seemann,T. TITLE Direct Submission JOURNAL Submitted (12-APR-2011) Veterinary and Biomedical Sciences, University of Minnesota, 1971 Commonwealth Ave, Saint Paul, MN 55108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP002668. Source bacteria is available from Timothy Johnson, joh04207@umn.edu. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6804 /organism="Gallibacterium anatis UMN179" /mol_type="genomic DNA" /strain="UMN179" /isolation_source="lesion of a laying hen affected by peritonitis" /host="Gallus gallus" /db_xref="taxon:1005058" /plasmid="pUMN179" /country="USA: Iowa" gene 1..993 /gene="repA" /locus_tag="UMN179_p00001" /db_xref="GeneID:10565802" CDS 1..993 /gene="repA" /locus_tag="UMN179_p00001" /codon_start=1 /transl_table=11 /product="replication protein RepA" /protein_id="YP_004421432.1" /db_xref="GI:332290581" /db_xref="GeneID:10565802" /translation="MNDMTVWKSNEIVEAGYRLSLGEQRLILLSLGQLDSRDLTQKHV ILYAKDFAKAWGVSDKTAIRDLKLASDRLFDRYITLKNDSKIKKFRWIQSATQYLDGQ GAVEFTFSDDILPFLFKLEHSLGNFTKYELLNVSGFSSVYSFRLYELAVKMRRMTESK ILVEELRRILQVDNKYPEYGEFKRCVISKSLKDINEKSDLLVDIDPIKRGRSIYALRF TIKQKQAQAVSKITKRPPFPHKNKYGKFVKLERTDPKMSSAEYGNYARDCLKILEDFY SNIEDVPNEDLRNYWVFLETNASNRSKLGKKQDFLDELNKRGFKLINCELVKND" misc_feature 13..660 /gene="repA" /locus_tag="UMN179_p00001" /note="Initiator Replication protein; Region: Rep_3; cl03080" /db_xref="CDD:186548" gene 1171..1707 /locus_tag="UMN179_p00002" /db_xref="GeneID:10565797" CDS 1171..1707 /locus_tag="UMN179_p00002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004421433.1" /db_xref="GI:332290582" /db_xref="GeneID:10565797" /translation="MTTIDLNRITAKSYKKLTLALITNLLQEDKDNPDPEIQQIYKNL LNLRYDEILEIAGSLAFSVQIEINKNIINSHFRIKLLQRNLIKFGASISQMKRWFGMQ ANEITALKKACGVEPTPGRAAFITKEEDIHKIYKCYKELDNVVSDSHPYRDAEIYFLL AKRFNVSIKSLEASLNSY" misc_feature 1216..1674 /locus_tag="UMN179_p00002" /note="Protein of unknown function (DUF2857); Region: DUF2857; pfam11198" /db_xref="CDD:151640" gene complement(2193..3752) /gene="traG" /locus_tag="UMN179_p00003" /db_xref="GeneID:10565798" CDS complement(2193..3752) /gene="traG" /locus_tag="UMN179_p00003" /codon_start=1 /transl_table=11 /product="putative conjugal transfer pilus assembly protein TraG" /protein_id="YP_004421434.1" /db_xref="GI:332290583" /db_xref="GeneID:10565798" /translation="MDGIPIYTNSYFEYYLTVLGWFINNGIWDLLVETGLFSTPFFAH LIRFWLKVREEGDDEGNKGKLLLNRIEHAFYLSMVVILFTCMPLFTINVNNITYDETR SKQCKVSIISPQQSSMSYMQTTLDGQQAKMPLWWAFTTVVSKAVTQAAITTIPCSPDI RQLRFEVNNTLITSAVLRQEVQDFFEQCYVPARKKIKRKNVKTNEVQDRDLDWIGSRL MVETPNLYDSYRAKMPRPEFPYDPKRDQALPNTGKGGFPKCNEWWDKPGVGLKARLLE QYSPSTIASFKQTYDLDKNYYNANPKRISDSEMADVLVRNLVKPEKMAVSNGKIYSNL SSDIISDFFSGLRSGLSKLVAGAGTTTTLAVVTPGFDAMRQALPMIQGLLSVVFVISI PFVMVFSGYSMKAAMVMTFIQFGLYFLTFWWELARWLDSSLLSGLYGSDTHSYFNLYG LENTEDDTVVKLVIGAMYIVFPGFFMMAMGKAGVAVGEVAGYLGSAAQKTKKGGESAA DSIKNRIKNNM" misc_feature complement(2337..3716) /gene="traG" /locus_tag="UMN179_p00003" /note="TraG-like protein, N-terminal region; Region: TraG_N; pfam07916" /db_xref="CDD:149152" gene complement(3763..4074) /locus_tag="UMN179_p00004" /db_xref="GeneID:10565799" CDS complement(3763..4074) /locus_tag="UMN179_p00004" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004421435.1" /db_xref="GI:332290584" /db_xref="GeneID:10565799" /translation="MAKIKQKLLQGFKFFSKFIVWLIAIHILLALLMYFFPGTELRDF VQNNRSGLLLWRICLYSAGLFLILKISKTSEYWKQQMKRSLVQFFVLISVIEFISFIS H" gene complement(4218..4496) /locus_tag="UMN179_p00005" /db_xref="GeneID:10565800" CDS complement(4218..4496) /locus_tag="UMN179_p00005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004421436.1" /db_xref="GI:332290585" /db_xref="GeneID:10565800" /translation="MKTDYIVLWRQTALDRLMTKAEYIAEQSKNQDIADNFIETIQEL SEKLSYTAGAYDDQNIHTFPLKNGHSVRFLVAGDVVLITDFIPRGMNI" gene complement(4752..5633) /locus_tag="UMN179_p00006" /db_xref="GeneID:10565801" CDS complement(4752..5633) /locus_tag="UMN179_p00006" /codon_start=1 /transl_table=11 /product="putative integrase" /protein_id="YP_004421437.1" /db_xref="GI:332290586" /db_xref="GeneID:10565801" /translation="MRDLVYSVAVLCKHNKDGSYGTAAERQKSLKAAMQAISDAGYGI RDVKQLKGKHIRFLVEKWKSDPNLSTGTIKNRMSHLRWLAEHIGNPRIVERSNSSYNI ENRKYVDNHSNKAKSLSMERLDSLTNDFVKYSLRLQQEFGLRREEAIKFQPRFADRGE KIVLMASWCKGGREREIPITTSSQRQLLDEVHEFCRQNGVKSLIPQEKTYKQQMRTYE YQTAKVGEVKNHGLRHAYAQRRFEQLSGLTSPKNGGKTSRKLSESEKQANLKARLQVS SELGHNREEITAVYVGR" misc_feature complement(5355..5633) /locus_tag="UMN179_p00006" /note="Phage integrase, N-terminal; Region: Integrase_l_N; pfam12834" /db_xref="CDD:193309" misc_feature complement(4791..5285) /locus_tag="UMN179_p00006" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" ORIGIN 1 atgaacgata tgactgtttg gaaatctaat gaaattgtag aggctggtta tagattgagc 61 cttggtgaac aacgtttaat attgcttagt ttagggcagt tagatagtcg tgatttaact 121 caaaaacacg ttattctata tgctaaagat tttgctaaag cgtggggtgt tagtgataaa 181 acagctatta gagatttaaa acttgcgagt gatcgccttt ttgatcgtta tataacctta 241 aaaaatgata gtaagattaa aaagttccgt tggatacaat cagcaaccca gtacctagat 301 ggtcaagggg cggtagaatt tacctttagt gatgatatat tgccattttt attcaagtta 361 gagcattctt tagggaattt tactaaatat gaactcttga atgtgtctgg tttttcgagt 421 gtttattctt tcagactgta cgaattagct gtgaaaatga gaaggatgac tgaatcaaaa 481 atattagttg aggaactccg tagaatattg caagtagata acaaatatcc tgaatatggt 541 gagtttaaac ggtgtgtaat aagtaagagc ttgaaggaca ttaatgagaa atccgatcta 601 cttgttgata tagacccaat aaaacgggga cgtagcattt acgcattacg ttttacgata 661 aagcaaaaac aagctcaagc cgtaagtaaa attacgaaac gcccaccttt cccacataaa 721 aataaatacg gtaagtttgt gaagttggaa cgtacagatc cgaaaatgag ttcagctgaa 781 tacggcaact atgcaagaga ttgcttgaaa atccttgaag atttttactc aaatatcgaa 841 gatgtaccga atgaagattt acgtaattac tgggtatttt tagaaactaa cgcaagcaat 901 agatcgaaat taggaaaaaa acaagatttt cttgatgaat tgaacaaaag aggatttaag 961 ttaattaatt gtgagttagt taaaaacgat taatttttaa ccataattta atgattaaat 1021 cgcattacac cgttttttat ttatctgaaa agataactaa ttaactgatg ataaattgaa 1081 aaatttttta tataaaaaaa gcgttcccgt taagtgcgcc aacacttaac gggaactaat 1141 caaaacaacg tttaacaagg aaacgtcatt atgactacga tagatcttaa cagaatcaca 1201 gctaaatcat ataaaaaatt aactcttgca ctaatcacaa atcttcttca agaagataaa 1261 gataatccag atcctgaaat acagcaaatc tataaaaatc ttttaaattt aaggtatgat 1321 gaaattttag aaatagcagg aagcctcgcc ttttctgttc aaattgagat taataaaaat 1381 attattaact cacattttag gattaaattg cttcagcgaa atcttattaa atttggtgct 1441 agcatcagtc aaatgaaaag atggtttggt atgcaagcaa atgaaataac tgctttgaaa 1501 aaagcttgtg gagtcgaacc aacacctggc agagccgcat tcatcacaaa agaagaagat 1561 attcataaaa tttataaatg ttataaagaa ttggacaatg tagtttcaga ctctcaccct 1621 tatagggacg ctgaaattta ttttttatta gctaaaagat ttaatgttag tattaagagt 1681 ttagaggctt cactaaattc atattagatt agagggaaaa gctatgtcag aaaactttgg 1741 atataagtta ggcaaattta tcaaaaataa cttttcttct tcaactcaaa aagtagtaag 1801 tgcgggggtt gattcgcttg agaaacggtt gaataaacct gtaaagccaa aaagtaaaag 1861 atatactaat tctagcaaca atgatgaagt tacagatgtt tgtgatgcat ttgcaaaatc 1921 attagagata gatgcttctc tcacctatta cgaaaaaata aaataggctg caatgagaaa 1981 aggcaatgtg ctaatcaaag aaattaatat agtttctgta tcgaaatcct catcgagaat 2041 agcgtaaaat gcagaaacgg agatgatgtg taaacagcaa aaaagaaatg ataccttaat 2101 aaacattata atagacatat aaccacctat taaaagtctt tcttcctagt ggaagaaaga 2161 ctttgtatta atcccttctg attcttaatg attcacatat tgttttttat tctattctta 2221 atagaatcgg ctgctgattc acctcctttt ttagtttttt gcgctgctga acctaaatat 2281 cctgcaacct ctccaactgc caccccagct ttccccattg ccatcataaa gaagcccgga 2341 aaaacgatat acatcgcccc aatgaccagt ttaactaccg tgtcatcttc cgtgttttct 2401 aatccataga gattaaaata actgtgtgta tcgctgccat aaagtccact aagtaacgag 2461 ctgtcaagcc atctcgcgag ctcccaccag aatgttaaga aatacagtcc aaactgaata 2521 aaagtcatca ccattgccgc tttcatactg taaccactaa acaccattac aaacggaatg 2581 gaaattacaa acacaacgga tagcaatcct tgaatcattg gcaacgcttg ccgcattgcg 2641 tcaaaaccgg gtgttaccac tgcaagcgtt gttgttgtac ctgctccggc aaccagttta 2701 gatagccctg atcgaagccc tgaaaaaaaa tcagaaataa tgtcactact taagttagaa 2761 tagattttcc cattagatac tgccattttt tctggcttca ctaaattccg gactaaaaca 2821 tctgccattt cagaatctga aatccgtttt ggattggcat tgtagtagtt tttatctaaa 2881 tcataagtct gtttaaaact agcaatagtg cttgggctat actgctctaa caatctcgct 2941 tttaatccta cgcctggttt atcccaccat tcattgcatt tcgggaatcc gcctttgccg 3001 gtattcggca acgcctgatc acgcttcgga tcataaggga attccggacg tggcatttta 3061 gctcgatagg aatcatataa atttggtgtt tcgaccatta agcgtgaacc aatccagtca 3121 agatctctat cttgaacctc attggtttta acgtttttgc gtttaatttt tttgcgagct 3181 ggaacataac attgctcaaa aaagtcttgc acttcttgtc gcaaaactgc actagtaata 3241 agcgtgttat taacttcaaa tcgcagttgt ctaatgtcag gactgcaagg gattgtcgta 3301 atagctgctt gtgttacggc tttacttaca acagtcgtaa acgcccacca aagtggcatt 3361 tttgcctgtt gcccgtctaa cgttgtctgc atatagctca ttgagctttg ttgaggcgag 3421 ataatgctga ctttgcactg tttagagcga gtttcatcat aagtgatgtt gttcacatta 3481 atcgtgaata gtggcataca ggtaaataaa ataacaacca tactcaaata aaaagcgtgt 3541 tcaatgcgat ttagcaataa tttgccttta ttgccttcat cgtccccctc ttcacgcact 3601 tttagccaaa atcttattaa atgcgcaaag aatggcgtag aaaacaaacc tgtttcgaca 3661 agaagatccc atatgccatt gttgatgaac caacccaaca cggtcaggta atattcaaaa 3721 taactattag tataaatagg aataccgtcc atattactcc acctaatgac taataaaact 3781 tataaactcg ataacagaaa tcaacacaaa aaattgcact aatgaacgtt tcatctgttg 3841 tttccagtat tcacttgttt ttgaaatttt taagattaaa aataatcctg cactgtataa 3901 gcatattcgc cagagaagta accctgatcg attattttga acaaaatctc tgagctccgt 3961 gcccgggaaa aaatacatta atagggctaa taaaatatgt attgctatca accacacgat 4021 aaattttgaa aaaaacttaa agccctgtaa caacttttgt ttaatctttg ccatagaaat 4081 aaaaaggata attgattaat ggataaccat tcttacttga agagaaaaat taatcgatag 4141 tttattgttt attgaaataa aacaatttat aaaaaaaaga ccgcatcaag cggtcattct 4201 atctataata agtgggttca gatattcatt cctctaggaa taaaatctgt gataagaact 4261 acatcacccg caaccaggaa acgcacagag tgaccatttt taagagggaa agtatgaata 4321 ttttgatcat cataagctcc tgcggtgtaa ctcagctttt ctgataactc ctgtatagtt 4381 tcaataaaat tatcagcaat atcttgattt ttactctgtt cagcaatgta ttcagcttta 4441 gtcattaacc tatcaagagc ggtttgtcgc cacaaaacaa tataatctgt tttcattttt 4501 tcaaaatttt atgtagctcg ctcattacat actcgtgtga gtatactttt tctttgccag 4561 tcataatgtc tgaaagaatt tgccaatatt cagcaggtcc tgttctagtg acggattcaa 4621 actttgttaa actttcttgt ttttttgatt gtacgttcat catttcagaa ctccctaaat 4681 tgtttaaaaa ataataattg aacaaaaaag caacactggt cacagtgtga tcggttattt 4741 tttgatcaat tttaccgccc aacatagacc gcagtgattt cttctcgatt atgcccgagt 4801 tcactactca cttgcaatcg agcctttaaa tttgcttgtt tttcgctttc agacagcttt 4861 ctagacgttt tcccgccgtt tttaggtgat gtaagtcccg atagctgctc aaatcgtctt 4921 tgtgcgtatg cgtggcgtaa accgtgattt ttaacttcac cgactttagc ggtctgatac 4981 tcgtatgttc gcatttgctg tttatacgtt ttttcttgcg gaattaacga ttttacgcca 5041 ttttgtcgac aaaattcgtg tacttcatcc aataattgcc gctgagatga tgttgttatt 5101 ggaatttctc gctctctgcc gcctttgcac caactcgcca ttaatacgat tttttctccc 5161 cgatcagcaa atctaggctg aaatttaatc gcttcttctc gtcttaatcc gaattcttgt 5221 tgtaatcgta gtgagtattt aacgaaatcg ttcgttaagc tgtctaatcg ctccatagag 5281 aggcttttag ccttattgct atgattatct acatattttc tattttcgat gttatagctc 5341 gaattagagc gttctacgat acgagggttt ccgatatgtt cagcaagcca tctcaaatga 5401 ctcatcctgt ttttaattgt acctgttgag agatttggat cagatttcca cttttcgacc 5461 aaaaatcgaa tgtgtttacc ttttagctgt ttaacgtcac gaatgccata ccctgcatca 5521 gaaatcgctt gcattgctgc tttaagcgat ttctgacgtt ctgcagctgt gccgtagctg 5581 ccgtctttgt tatgtttgca taagacggca acagaataga caagatcacg catattgatg 5641 acccttgaaa ttaatttgct aagtgttagt tcgatattag ttagagcgta ggtaactaat 5701 aataaaattg ctgttctaca gcgtcacaag acagggcgta tcatatcttg agcattattt 5761 ttaaaatggt atgtcgctaa tatatcaagt catttttcgt aatccttata tgttcagaga 5821 gtaaacggat tacattaccc agtgggtaaa aatgtaatcc ccacagggcg tgcaattcga 5881 tcagctgtcg ttaaaattgg tttttaacgc gcactccagc cttaaaggct cttctcaagt 5941 tgccaacctt gagcgataac cgatccgaag acgacacatt tcaggttatt gctgtgtcta 6001 cgttcatatt ttcaagtggc tgaactgcaa gccaacaaag agcggtgaat ttttaaaacc 6061 gtcacctcgg ttttaaaagg cgattttaca agtttactct tggatctttc ctatcaacga 6121 tagtagccga tctcgctatt ttgtgagtct taagcatatc atttaatacg aaatgattgc 6181 aagccttgat aactctaaaa actttaagct aaataatcaa aatccgtcat tccccaaaaa 6241 actcacgttt tttagcgaat gacggatttt atatcgtgcc tcttatgggg gttattaggg 6301 ggctttgccc cctgatagaa gcgaacgaag gtgagcggaa acccctcgat aatgtttagt 6361 gtaatggctg tgttgggcgt gcagttttga taatcgatga gagcaacttc ccacctaaaa 6421 aacctaatag cgatatatcc ttgctaccgc cctcgcttaa aagctcggtt gctgaatctt 6481 ttttagcatt gccgtaaacg ccaacgctaa aaaagatttc cacagaaaaa aatagaaata 6541 gggcgaagcc ctctatattc tttcttcttt ctttctttct tctttagaga cgttgaaagc 6601 cttgcaaata aaggctctag agatttatag atgtagtaat tgacggtgat agatgtagta 6661 attgacggtg atagatgtag taattgacgg tgatagatgt agtaattgac ggtatatatg 6721 tatattatct tgcattatac atttatgtat aataaagtat taattacata aatatcatca 6781 atttctacat tgaaaggtta cttt //