LOCUS NC_015422 4995263 bp DNA circular BCT 27-APR-2011 DEFINITION Alicycliphilus denitrificans K601 chromosome, complete genome. ACCESSION NC_015422 VERSION NC_015422.1 GI:330822653 DBLINK Project: 66307 KEYWORDS . SOURCE Alicycliphilus denitrificans K601 ORGANISM Alicycliphilus denitrificans K601 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus. REFERENCE 1 (bases 1 to 4995263) AUTHORS Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Zeytun,A., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N., Pagani,I., Oosterkamp,M., Pieper,D., van Berkel,W., Langenhoff,A., Smidt,H., Stams,A. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Alicycliphilus denitrificans K601 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4995263) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-APR-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4995263) AUTHORS Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Zeytun,A., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N., Pagani,I., Oosterkamp,M., Pieper,D., van Berkel,W., Langenhoff,A., Smidt,H., Stams,A. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (13-APR-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP002657. URL -- http://www.jgi.doe.gov JGI Project ID: 4086862 Source DNA and organism available from Alfons Stams (fons.stams@wur.nl) Contacts: Alfons Stams (fons.stams@wur.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Alicycliphilus denitrificans K601 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Germany environment :: Missing num_replicons :: 2 ref_biomaterial :: DSM 14773 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Facultative isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03920 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Greengenes ID :: 557874 Funding Program :: DOE-CSP 2009 Isolation Site :: Anaerobic sewage sludge Temperature Range :: Mesophile Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4995263 /organism="Alicycliphilus denitrificans K601" /mol_type="genomic DNA" /strain="K601" /isolation_source="anaerobic sewer sludge" /db_xref="taxon:596154" /country="Germany" gene 104..1525 /locus_tag="Alide2_0001" /db_xref="GeneID:10485827" CDS 104..1525 /locus_tag="Alide2_0001" /inference="protein motif:HAMAP:MF_00377" /note="SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: dia:Dtpsy_0001 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal" /codon_start=1 /transl_table=11 /product="chromosomal replication initiator protein dnaA" /protein_id="YP_004385957.1" /db_xref="GI:330822654" /db_xref="InterPro:IPR001957" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013159" /db_xref="InterPro:IPR013317" /db_xref="GeneID:10485827" /translation="MHEGPSHSSHDTDGDSAGQGLWQACTEQLAQDLPEQQFNTWIKP LVAQVSPDFSKVTLLVANRFKLDWIRAQYAGRISALLEELYGQPVTLELALAQRESVA RTYVRPVPASIEAPAANAPAGAAAEEPPAGAFRTRLNPALTFETLVEGTANRMARSAA MHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVGNKLLADRPDAKVLYIHAEQFVSDVVK SYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDT YPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAILINKARAEHAEMPEEVAFFVAKN VRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSIQNRQISVENIQKTVADY YKIKVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKI GAERQQLTELNQQLHVLEQTLKG" misc_feature <122..>388 /locus_tag="Alide2_0001" /note="hypothetical protein; Validated; Region: PRK06672" /db_xref="CDD:180654" misc_feature 158..1522 /locus_tag="Alide2_0001" /note="chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149" /db_xref="CDD:178902" misc_feature 614..985 /locus_tag="Alide2_0001" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 635..658 /locus_tag="Alide2_0001" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(638..661,824..826,923..925) /locus_tag="Alide2_0001" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 812..829 /locus_tag="Alide2_0001" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 974..976 /locus_tag="Alide2_0001" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1247..1516 /locus_tag="Alide2_0001" /note="C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571" /db_xref="CDD:119330" misc_feature order(1316..1318,1340..1345,1364..1366,1382..1390, 1415..1429,1436..1438,1445..1450) /locus_tag="Alide2_0001" /note="DnaA box-binding interface [nucleotide binding]; other site" /db_xref="CDD:119330" gene 1652..2758 /locus_tag="Alide2_0002" /db_xref="GeneID:10481018" CDS 1652..2758 /locus_tag="Alide2_0002" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR00663" /note="SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dia:Dtpsy_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain, C-terminal; DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, central" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit beta" /protein_id="YP_004385958.1" /db_xref="GI:330822655" /db_xref="GO:0003677" /db_xref="GO:0003887" /db_xref="GO:0008408" /db_xref="InterPro:IPR001001" /db_xref="InterPro:IPR022634" /db_xref="InterPro:IPR022635" /db_xref="InterPro:IPR022637" /db_xref="GeneID:10481018" /translation="MIVLKATQDKVLAVLQSVSGIVERRHTLPILANVLIRKTGNALQ FTTSDLEIQIRTTAELGGDTGDFTTTVGARKLIDILKTMPADQTVSLENSQTKLILKG GKSRFTLQTLPAEDFPLVQEAASFGPAFSVPQKTLKTLLSQVSFAMAVQDIRYYLNGI LFVAEGKTLSLVATDGHRLAFASSELDMEVPKQEVILPRKTVLELQRLLSDADGAIEM RFANNQAKFGFGGMEFVTKLVEGKFPDYNRVIPRNHHNVITLGRAPLLASLQRTAIMT SEKFKGVRLNIEPGSLRVASSNAEQEEAVDELDIDYGGDSIEIGFNVTYLIDVLANMG QDMVRMELADGNSSVVFGIPDNTHFKYVVMPMRI" misc_feature 1661..2755 /locus_tag="Alide2_0002" /note="DNA polymerase III subunit beta; Validated; Region: PRK05643" /db_xref="CDD:180180" misc_feature 1661..2752 /locus_tag="Alide2_0002" /note="Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the...; Region: beta_clamp; cd00140" /db_xref="CDD:29053" misc_feature order(1724..1726,1871..1873,1892..1894,2249..2251) /locus_tag="Alide2_0002" /note="putative DNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29053" misc_feature order(1874..1876,1883..1885,1961..1963,1967..1969, 2471..2473,2564..2569) /locus_tag="Alide2_0002" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29053" misc_feature order(2171..2173,2177..2188,2615..2617,2741..2752) /locus_tag="Alide2_0002" /note="beta-clamp/clamp loader binding surface; other site" /db_xref="CDD:29053" misc_feature order(2171..2173,2177..2182,2396..2398,2501..2503, 2540..2545,2624..2626,2741..2752) /locus_tag="Alide2_0002" /note="beta-clamp/translesion DNA polymerase binding surface; other site" /db_xref="CDD:29053" gene 2877..5459 /locus_tag="Alide2_0003" /db_xref="GeneID:10481019" CDS 2877..5459 /locus_tag="Alide2_0003" /inference="protein motif:TFAM:TIGR01059" /note="TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: dia:Dtpsy_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit B" /protein_id="YP_004385959.1" /db_xref="GI:330822656" /db_xref="GO:0003677" /db_xref="GO:0003918" /db_xref="GO:0005524" /db_xref="InterPro:IPR001241" /db_xref="InterPro:IPR002288" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR011557" /db_xref="InterPro:IPR013506" /db_xref="GeneID:10481019" /translation="MTDENQPDPQTTAPASVDAGGYGEGAIQILEGLEAVRKRPGMYI GDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVIDNGRGIPTGVKMD DKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKKLRLTVRRDGK THQLEFSKGVVQNRLIEVVDGFEVSPMKIVGPTEKRGTEVRFLPDTEIFKENSDFHYE ILAKRLRELSFLNNGVRIRLIDERTGKEDDFSGAGGVKGFVEFINGTKKVLHPTAFHA TGSRPAESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTR VIGKYIEQNELAKKAKVDVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPV EDIVAKALTEYLEEKPQDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKL ADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLSSN EIITLITALGTGIGKASEDGNGKSGADDFDAAKLRYHRIIIMTDADVDGAHIRTLLLT FFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDNFLLRVALNHASISTGG DAPRTLAGDELATLARTHQHAERVIDRLSAFMDAEALRAAADGVAFNLDTLEDAQASA VQLQARLRELNTSGVPADVTGEIDPRTDKPILRISRHHHGNIKSSLITQDFVAGDDYA ALAEAAESFRGLIQEGAKVMRGEGEKQKEEKISDFRQAMQWLIGEAERTTARQRYKGL GEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAG NIDV" misc_feature 2940..5456 /locus_tag="Alide2_0003" /note="DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939" /db_xref="CDD:184903" misc_feature 3033..3344 /locus_tag="Alide2_0003" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(3051..3053,3063..3065,3072..3074,3138..3140, 3144..3146,3150..3152,3156..3161,3288..3299) /locus_tag="Alide2_0003" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 3063..3065 /locus_tag="Alide2_0003" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(3150..3152,3156..3158,3288..3290,3294..3296) /locus_tag="Alide2_0003" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 3633..4133 /locus_tag="Alide2_0003" /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are...; Region: TopoII_Trans_DNA_gyrase; cd00822" /db_xref="CDD:48467" misc_feature 3816..3818 /locus_tag="Alide2_0003" /note="anchoring element; other site" /db_xref="CDD:48467" misc_feature order(3990..3992,3999..4004,4008..4010) /locus_tag="Alide2_0003" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48467" misc_feature order(4008..4010,4014..4016) /locus_tag="Alide2_0003" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48467" misc_feature 4257..4634 /locus_tag="Alide2_0003" /note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of...; Region: TOPRIM_TopoIIA_GyrB; cd03366" /db_xref="CDD:173786" misc_feature order(4275..4280,4287..4289,4530..4532,4536..4538, 4542..4544) /locus_tag="Alide2_0003" /note="active site" /db_xref="CDD:173786" misc_feature order(4275..4277,4530..4532) /locus_tag="Alide2_0003" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173786" misc_feature 5253..5423 /locus_tag="Alide2_0003" /note="DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986" /db_xref="CDD:189792" gene 5524..6156 /locus_tag="Alide2_0004" /db_xref="GeneID:10481020" CDS 5524..6156 /locus_tag="Alide2_0004" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004385960.1" /db_xref="GI:330822657" /db_xref="GeneID:10481020" /translation="MNAAPQLVLIDTNCLVRAYFSPLRPILGRPVAGYELKTLNGLAA ELKNLAKRPDLAWLSDQVIVNEVDAATVTLTKAQRQAIDQDALEIQKVGNAALYEDYR DRKLKVRRALTLADSKALAACLELNAALSTDEWPLRLVSEMYDYDNGDSVRLFSSVEL IALLEHEGLINRETRIRTYADWLKNGEKLLRESPDIYSRLFNEPPPTAQD" gene complement(6147..7277) /locus_tag="Alide2_0005" /db_xref="GeneID:10481021" CDS complement(6147..7277) /locus_tag="Alide2_0005" /inference="protein motif:PFAM:PF01381" /note="manually curated; PFAM: Helix-turn-helix type 3; KEGG: sbl:Sbal_4355 XRE family transcriptional regulator; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004385961.1" /db_xref="GI:330822658" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10481021" /translation="MLNIPAIEGAMRRLGMSGTALAEACTVSKEATSNWLNGESIPRP SKLTKLSEVLGIPVETLLNVVQPPTPVFAYRTKFNKPVSGPMRDAAEEQARHLEQLLP FVDERPDFEPPLLREPSLDAERIRNAATRARASLGLSNHDVLSNENLERLFHIFGAIF VPVMWGLNKERHENALTVYLPESKTFWVVFNLGCRSDDYKYWLAHEYGHCLTMHALSE EDGETFAEKFAQQLVFPDEVANECLAAVRASSDGLVVITEYAKRFGVSVITILRAIDR LSEQLYGMKTGLDTPKFYAAWNRGRANVPTMTRVISGSDTPSQQEYVVKAGEYYKTPV FRAIQSFQETEGGRNPAFIASVLNLGIGDALSLSHVLWEHQS" misc_feature complement(7095..7262) /locus_tag="Alide2_0005" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature complement(order(7167..7169,7242..7244,7254..7256)) /locus_tag="Alide2_0005" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(order(7170..7172,7245..7247)) /locus_tag="Alide2_0005" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature complement(order(7164..7169,7179..7181,7188..7190, 7221..7226)) /locus_tag="Alide2_0005" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(6384..6914) /locus_tag="Alide2_0005" /note="Domain of unknown function (DUF955); Region: DUF955; cl01076" /db_xref="CDD:154183" gene complement(7771..8685) /locus_tag="Alide2_0006" /db_xref="GeneID:10481022" CDS complement(7771..8685) /locus_tag="Alide2_0006" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004385962.1" /db_xref="GI:330822659" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10481022" /translation="MKNYIDRHRDDYGVEPICRVLQMAPSCYWRHAARQRNPQLRSQR VQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIAVARCTVERLMRAMGLQGARRG KTVRTTTPDTSAPCPLDHVNRQFKASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAVSDTSTEVST" misc_feature complement(7789..8625) /locus_tag="Alide2_0006" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(7954..8310) /locus_tag="Alide2_0006" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(8682..9005) /locus_tag="Alide2_0007" /db_xref="GeneID:10481023" CDS complement(8682..9005) /locus_tag="Alide2_0007" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004385963.1" /db_xref="GI:330822660" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10481023" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADAQRIKELEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature complement(8796..9005) /locus_tag="Alide2_0007" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene complement(9272..9736) /locus_tag="Alide2_0008" /db_xref="GeneID:10481024" CDS complement(9272..9736) /locus_tag="Alide2_0008" /inference="similar to AA sequence:KEGG:PCC8801_1290" /note="KEGG: cyp:PCC8801_1290 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004385964.1" /db_xref="GI:330822661" /db_xref="GeneID:10481024" /translation="MKPEVALLELTVINAEAQQAESFAAAAKALLDRGLPPEVVTRMQ DLWDKTKVIGGEVVAVGKIIIKKIVDFFLANPGLAIGVAIGAAVSALVSASIPFIGAL LAPLVGVLVALYGYNIQEGGRDSMLHSTVKLAVEFFKLLVDIFKAVVNYIVA" gene 10466..10879 /locus_tag="Alide2_0009" /db_xref="GeneID:10481025" CDS 10466..10879 /locus_tag="Alide2_0009" /inference="protein motif:PFAM:PF03692" /note="PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0006 protein of unknown function UPF0153" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004385965.1" /db_xref="GI:330822662" /db_xref="InterPro:IPR005358" /db_xref="GeneID:10481025" /translation="MRSPIAIVDVDRPDTWTRYRAGLCNSCAANCCTMPLEVQLPDLV RLGLVDPFEAEHVAPKLIARRLLKARLVDHYSPRHGLFTMARRADGDCGFLDAATRLC TVYERRPETCRLHPQTKSPRPGYCAYGARTLQRRG" misc_feature <10721..10846 /locus_tag="Alide2_0009" /note="Flagellin N-methylase; Region: FliB; cl00497" /db_xref="CDD:186037" gene complement(10904..12097) /locus_tag="Alide2_0010" /db_xref="GeneID:10481026" CDS complement(10904..12097) /locus_tag="Alide2_0010" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: reh:H16_A2137 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004385966.1" /db_xref="GI:330822663" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481026" /translation="MASLDGLKVVDLSRVLGGPLCAQILGDHGADVVKVEGPAGDETR TWGPPFNDAGMASYFAGINRNKRTVCVDLAAPEGRDVVMRLLQDADVLIENFKVGTLE RWGMGYDEVLRERFPRLIHCRVTGFGATGPLGGLPGYDAAVQALSGLMSINGDPEGVA TRMGVPIVDVTTGLNAVIGILMALHERERSGRGQSVESALFDSALFSLYPHSINTLFT GRAPQRSGNGHPNIAPYDTYATATEPIYLAVGNNGQFQRLCEAVGHAHLAEDERYATN AQRAVHRFELKKDLQSAFSSFDAQTLFQKLVAVGVPCGVIQNVVEALAHPHTAHRGMV AEVEGFRSVASPIKFSRTPASYRLRPQEIGQSTLQVLGEAGLSQEQIALLLERGVIRQ APRPG" misc_feature complement(10928..12088) /locus_tag="Alide2_0010" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(12107..12964) /locus_tag="Alide2_0011" /db_xref="GeneID:10481027" CDS complement(12107..12964) /locus_tag="Alide2_0011" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: reh:H16_A2138 enoyl-CoA hydratase/carnithine racemase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004385967.1" /db_xref="GI:330822664" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10481027" /translation="MQAEDSEAWVLASRVGPVARIHLNRGDARNPLGAEMVQALSAAV GEASGQSGVRVILLTAAGPAFSAGGNLGNLGDRLAAAAGPDGRDPIAAGNRRYGEFLT QLVNVPQVTVACVQGAAMGGGAGLACAVDIAVGSPEARFGFPEAAIGLVPGQILPFVA ARLGLPAARRLVLTGRRIDAAEAHRIGLLDYVADSHQALGALTRQVLESVVATAPQAS ACTKRMLGRLPVAPLQASGALQGYLDEAAELFAGQMRSEAMEGVSAAREKRPARWNEA GELSALDLA" misc_feature complement(12146..12937) /locus_tag="Alide2_0011" /note="enoyl-CoA hydratase; Provisional; Region: PRK05995" /db_xref="CDD:180345" misc_feature complement(12362..12937) /locus_tag="Alide2_0011" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(12521..12523,12530..12535,12599..12607, 12611..12613,12752..12766,12776..12778,12872..12874, 12878..12880)) /locus_tag="Alide2_0011" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(12599..12601,12758..12760)) /locus_tag="Alide2_0011" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(12395..12397,12404..12406,12437..12439, 12446..12451,12455..12460,12464..12469,12482..12487, 12491..12499,12503..12505,12518..12529,12563..12574, 12635..12637,12659..12661)) /locus_tag="Alide2_0011" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 13018..13860 /locus_tag="Alide2_0012" /db_xref="GeneID:10481028" CDS 13018..13860 /locus_tag="Alide2_0012" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reh:H16_A2139 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004385968.1" /db_xref="GI:330822665" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481028" /translation="MRNLDIGLLRTFVAVAERESFTNAAEKVYRTQAAVSQQMQKLES VLGCALFERVGRRKKLTVEGVRLLEYARRMVGLNDEAYRVITQQAATQPVKIGACADA VDTLLPAYLEICAENFPNLSIDIQVGRSRWLASALRKGDIDLMLDITPHPEFAHTVLR TSPVAWIAGARYHPQAGASVPLILMEAACPFRSSMVQALTEAGIPWHAAFETSTLAGV RAALRAGLGVTARAVEMLAPDLRVLDPQARLPALPPISFCLYWRADASHESAMKVRHL IAPH" misc_feature 13027..13833 /locus_tag="Alide2_0012" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 13033..13209 /locus_tag="Alide2_0012" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 13297..13836 /locus_tag="Alide2_0012" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(13339..13344,13348..13353,13360..13362,13372..13374, 13378..13398,13642..13659,13675..13680,13684..13689) /locus_tag="Alide2_0012" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(13857..14879) /locus_tag="Alide2_0013" /db_xref="GeneID:10481029" CDS complement(13857..14879) /locus_tag="Alide2_0013" /inference="similar to AA sequence:KEGG:H16_A2140" /note="KEGG: reh:H16_A2140 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004385969.1" /db_xref="GI:330822666" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481029" /translation="MQILNHESRLSRRELLRSAGAMGLGMAAGLPALAQGAGAADFRL DKQVRIIVAYGAGGASDAIARYVGDAIAQRGGKPVIVENRPGADGNIAAEAVVRAPTD AYNLLVSGSSTHAANATIYKKLAYDPDKDFTPLATMANTPYAMLVNPKRIAQTTAADF LAWARKDGQTLSFASANVGGRIAGERFKQLTRINAVNVPYKSSAQAMTDLIGGQFDYY FCDMLTALPQIKAGTVRALALSSSKRIASLPDVPTVAELGYPDFDVSSWIAIWSARAT TPQPVSAALSRWIGEALESPAGQDFLVKKGLVPTPVSPEHLLHLQARDTRDWGRIIIE AGMQQP" sig_peptide complement(14775..14879) /locus_tag="Alide2_0013" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.772 at residue 35" misc_feature complement(13863..14747) /locus_tag="Alide2_0013" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(13872..14693) /locus_tag="Alide2_0013" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(14914..16686) /locus_tag="Alide2_0014" /db_xref="GeneID:10481030" CDS complement(14914..16686) /locus_tag="Alide2_0014" /inference="protein motif:PFAM:PF07287" /note="PFAM: Protein of unknown function DUF1446; KEGG: reh:H16_A2141 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004385970.1" /db_xref="GI:330822667" /db_xref="InterPro:IPR010839" /db_xref="GeneID:10481030" /translation="MNQTVLIGGASGFWGDSQIAVPQLLRQPGLQYLVFDYLAETTMS ILQRARLRAPELGYATDFVTAAVGPHLREIKAKGVRLVSNAGGLNPAGCRDAILALAR EQGVDLKVAIVTGDDVLDLQPRFEPWGDEATADLPALMSANAYLGAAPVAQALAAGAD IVVTGRCVDSASLLGIAIHEFGWRMTDYDRLAQASLAGHLVECGAQATGGLFTDWEQV PDWADIGYPLVRLQADGSFELSQPEGAGGLVTRQTVGEQLLYEIGDPAAYELPDVVCD FTQVAITDLDGGRVRVQGARGRAPGGRYKVTATYQQGWHIAIMMAIRGQRALAKAQRT ADALLARTRRQMQAAGFADYEDTLVELLGAESMYGPHRRVADSREIVLRIAARHRDRR ALAFLQKEASSAGTSMGPGTRSHFGGRSDVQSIIRTASFLLPKAAVAVQVQAAPDEAP AAVEAADAAAAPAAPNPPEATAAGAAASGPTVRIALGRIAHGRSGDKGDDANIGLMAR DPKWLPVLRGQLTAERVLQYFAHLVQGPVQRYELPGLGAFNFVLRRALGGGGSCSLRS DPLGKCYAQMLLDMEIDCPEDLAP" misc_feature complement(15598..16668) /locus_tag="Alide2_0014" /note="Protein of unknown function (DUF1446); Region: DUF1446; pfam07287" /db_xref="CDD:191720" gene complement(16683..18701) /locus_tag="Alide2_0015" /db_xref="GeneID:10481031" CDS complement(16683..18701) /locus_tag="Alide2_0015" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4" /note="PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: xtr:100489724 acetyl-/propionyl-coenzyme A carboxylase alpha chain-like; SMART: Biotin carboxylase, C-terminal" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase" /protein_id="YP_004385971.1" /db_xref="GI:330822668" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="GeneID:10481031" /translation="MRFDTLLVANRGEIALRILRTARRMGLRTVAVYSDADAHGPHVR AADMAVHIGPTPADQSYRNGAALIEACRRTGAQAIHPGYGFLSENAEFAQAVADAGLV FVGPSARVIALMGNKAQAKQAMQAAGVPTVPGEQGCATQEQIAAAARRIGFPVILKAA AGGGGRGMRVVREAGDLAEMFRQAQSEAAGAFGSGEIIIERAIERGRHIEVQVLCDEH GRCLHLGERDCSTQRRFQKLIEEAPSPAVDAPLREAMGQVARQACEAIGYTGVGTLEF LLDDQKRFYFMEMNTRLQVEHGVTELVTGLDLVEQQIRVAQGEALTFGQQDVRLKGHA IELRLCAEDPWAGFLPQVGTVGEWQAPAGIRTDSALASGMAISPFYDSMVAKLMAWGE SREACIAQLARACERTTALGVRTNLGFLARCLRHPRFAQGQVTTDFLAQEDLQQPFWR RAPSAHALAAAALVLGGAVKTAMAGPAERLGGRSLWLRDATAGADGKAVQCTLASGAA GLVLQCSERAPGKAAAEDAQASSWQIAHLRWHDEAGGARLGLAIDGIYRELACWQEAA GRLWVQDGADAFVFERVERFEAAGARQGSGLLRAPMSGRVIAVLAGEGQSVAQGDPLV VIESMKMEMPLAAPCAGRIARLHVGEGQQLDAGQAVLEVDSEEEKETP" misc_feature complement(16710..18698) /locus_tag="Alide2_0015" /note="Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]; Region: COG4770" /db_xref="CDD:34383" misc_feature complement(18372..18695) /locus_tag="Alide2_0015" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature complement(17739..18320) /locus_tag="Alide2_0015" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(17382..17696) /locus_tag="Alide2_0015" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" misc_feature complement(16713..16910) /locus_tag="Alide2_0015" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature complement(order(16788..16790,16809..16817,16842..16844)) /locus_tag="Alide2_0015" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature complement(16812..16814) /locus_tag="Alide2_0015" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene complement(18718..19881) /locus_tag="Alide2_0016" /db_xref="GeneID:10481032" CDS complement(18718..19881) /locus_tag="Alide2_0016" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: reh:H16_A2143 acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004385972.1" /db_xref="GI:330822669" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481032" /translation="MMTSDHIALQDSVRKLIEREIEPHVDEWEAAEIFPAHEVFKKLG SAGFLGVNKPVEFGGMGLDYSYEIAFCEAIGGISSGGVGMAIAVQTDMATPALTHFGS DELRELFLKPTVAGDMVVCLGVSESGAGSDVASLKTTARKDGDDYVINGSKMWITNGT QADWMCLLANTSEGDVHRNKSLICLPLRENGKLRPGISMQKIKKVGMWASDTAQVFFD EVRVPQRYRIGEEGKGFTYQMRQFQEERLSGATRRVTALSNVIDETIAYTRQRKAFGR SILDNQAVHFRLAELKTEVEMLRSLIYRAAQVHMGGGDMTELASMAKLKAGRLCREVT DSCLQYWGGMGFTWENKVSRAWRDLRLISIGGGADEIMLTIICKHMGILPKRA" misc_feature complement(18727..19878) /locus_tag="Alide2_0016" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(18739..19869) /locus_tag="Alide2_0016" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(18775..18777,18781..18783,18787..18795, 19411..19413,19417..19419,19510..19512,19516..19518, 19606..19608)) /locus_tag="Alide2_0016" /note="active site" /db_xref="CDD:173838" gene complement(20013..21623) /locus_tag="Alide2_0017" /db_xref="GeneID:10481033" CDS complement(20013..21623) /locus_tag="Alide2_0017" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4" /note="KEGG: reh:H16_A2144 propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase" /protein_id="YP_004385973.1" /db_xref="GI:330822670" /db_xref="InterPro:IPR000022" /db_xref="GeneID:10481033" /translation="MAEKTGTGQASGGAQRNRAHMLERIDEVRRLEQRAVERSARSAR HFHAQGKLLPRERLAHLLDADRPFYELMTLSGYCGLEDPNPATSVPGSALIVGIGHIS GVRCMVAVNDSGISAGAMQALTGQKLIRAQEIALAQKLPFVQLVESAGGNLRKYRVER FVVGGGMFYSLARLSAAGLPVVALIHGSSAAGGAYLPGLSDYVVMVRGQAHAYLAGPS LLKAATGEEASDEELGGADMHAAVSGLADYVADNDLDGIMRVREIMQRIGWHGAPAPQ AAPPLHDADELLAIMPADMRTPVDMREVIARLVDGSEFHAFKERFGPATVCGYAAIEG HAVGILTNNGPLDSDGSNKAAQFIQLCVQLGRPLVFLQNITGFMVGRRHEEAGMIKHG AKLIQALSNAPVPRFTVLCGASYGAGNYGMCGRAFKPDLLFSWPNARTAVMGGEQAAM TMRTVAENAARRGGKDVDEQALAAESRAIVHTFESQSSAIHTSSLLLDDGVIDPRETR AWLGMALATAFDARERAVQPMQFGVARL" misc_feature complement(20016..21614) /locus_tag="Alide2_0017" /note="3-methylcrotonyl-CoA carboxylase, beta chain; Region: PLN02820" /db_xref="CDD:178415" misc_feature complement(20943..>21386) /locus_tag="Alide2_0017" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene complement(21735..22040) /locus_tag="Alide2_0018" /db_xref="GeneID:10481034" CDS complement(21735..22040) /locus_tag="Alide2_0018" /inference="protein motif:PFAM:PF00708" /note="PFAM: Acylphosphatase-like; KEGG: ajs:Ajs_4152 acylphosphatase" /codon_start=1 /transl_table=11 /product="acylphosphatase" /protein_id="YP_004385974.1" /db_xref="GI:330822671" /db_xref="InterPro:IPR001792" /db_xref="GeneID:10481034" /translation="MSQANATIARHLHIHGRVQGVYYRQSMIEAARRLGVRGWVRNRS DGSVEALAAGPAPAVQVLIDWARAGPPAARVERVDVQEADAAQLSGLPAGFDRRETL" misc_feature complement(21780..22025) /locus_tag="Alide2_0018" /note="Acylphosphatase; Region: Acylphosphatase; cl00551" /db_xref="CDD:193864" gene 22068..22352 /locus_tag="Alide2_0019" /db_xref="GeneID:10481035" CDS 22068..22352 /locus_tag="Alide2_0019" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S binding domain; KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /protein_id="YP_004385975.1" /db_xref="GI:330822672" /db_xref="GO:0009055" /db_xref="GO:0051536" /db_xref="InterPro:IPR001450" /db_xref="GeneID:10481035" /translation="MLSPMHAPRKALPAIDPDRCTGCGWCVAACPPHVLSLQVQGMER FGAKRSVLHDAPGCTGCALCALRCPFDAIRMVRTTARRGEHGQDIEAKVD" misc_feature 22104..>22160 /locus_tag="Alide2_0019" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature <22119..22295 /locus_tag="Alide2_0019" /note="RPB11 and RPB3 subunits of RNA polymerase; Region: RNAP_RPB11_RPB3; cl11409" /db_xref="CDD:196219" misc_feature 22122..22283 /locus_tag="Alide2_0019" /note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838" /db_xref="CDD:193313" gene 22670..24055 /locus_tag="Alide2_0020" /db_xref="GeneID:10481036" CDS 22670..24055 /locus_tag="Alide2_0020" /inference="protein motif:PFAM:PF00742" /note="PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; KEGG: ajs:Ajs_4155 homoserine dehydrogenase" /codon_start=1 /transl_table=11 /product="homoserine dehydrogenase" /protein_id="YP_004385976.1" /db_xref="GI:330822673" /db_xref="GO:0016491" /db_xref="GO:0050661" /db_xref="InterPro:IPR001342" /db_xref="InterPro:IPR005106" /db_xref="GeneID:10481036" /translation="MFLEPQPSLLPETRAHAPATPPALRVGMIGMGTVGAGVWRVLRR NQALIAARAGRPIDIVAVAARTPARAAAVLEGAPGVRLLADPMRLATDPGVDVVLELA GGSGAARGWVLAALAHGKHVVTANKALLAEHGEELATVAARHGRTLAYEAAVAGGVPV VKALREGLAANRIHALAGVLNGTSNYILTRMQAGGLDLAAALAEAQALGYAEADPALD VDGTDAAHKLALLAANAFGMPVRLDAVHVEGLRGLRQGDVAAAAQLGYAVRLLAIARR GAEGVELRVHPALVPERHALARLSGAANGLLVQGDAAGEAFYGGAGAGGEPTASAVLA DLVDLARLPAGAHARAGVPTLGVHSRAAEQPAPLPMAQVRTRHFLRLLPGPALNEAEA LRLLARAGLSVQRRAWGPAPEGGAAPTLLLLTAPAPDAVAAHAAARLHERTGAIVRRL RVEDFSSPEYA" misc_feature 22757..23122 /locus_tag="Alide2_0020" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 23159..23596 /locus_tag="Alide2_0020" /note="Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742" /db_xref="CDD:189696" gene 24215..26389 /locus_tag="Alide2_0021" /db_xref="GeneID:10481037" CDS 24215..26389 /locus_tag="Alide2_0021" /inference="protein motif:PFAM:PF06733" /note="KEGG: ajs:Ajs_4158 ATP-dependent DNA helicase DinG; PFAM: DEAD2; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal" /codon_start=1 /transl_table=11 /product="DEAD_2 domain-containing protein" /protein_id="YP_004385977.1" /db_xref="GI:330822674" /db_xref="GO:0003676" /db_xref="GO:0003677" /db_xref="GO:0004003" /db_xref="GO:0005524" /db_xref="GO:0008026" /db_xref="InterPro:IPR006555" /db_xref="InterPro:IPR010614" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="GeneID:10481037" /translation="MSTQPWAGQALQSFEAVVQSTAGFRVREGQRRMAEQVAQTFAQA QLGKLEDEDSQPRRAIAVVQAGTGVGKSLAYSVPAIAMALARGTRVLISTATVALQEQ LVHKDLPALAARMEQPFQFALAKGRGRYVCKLKLERLAGGAAGGEDGVPDDDLFPEEA AAQRQRPRHDAEARMRFYASMADALATGGWDGDRDTLDSPPEPEAWSPVAAEASSCTG KHCPLFSQCTYYERRKALVAAQVIVANHDLLLSSLGARLLPELDNCLLVIDEAHHLPA TALQQFACEADLSRLTWIDKLASRALRIGQLVEVEEIADIPNHAARLRAALQDAARLV MDLYGEQLRAPLPGRRQFSASMPTRARVQGGVLPEALAEPFSQAAHHAGGFLDALRAI AKALRGEMRDKPDEARRLSQLYAQIGALAPRLEGVHAAAQLLLQDAPDGAVPAAKWFT LETDGDFIVVRAHASPVLPGSTLQNHLWSAVRGAVLTSATLTGCGQFDFFLREAGLWG DDAVTTLAVPSPFDYALQGTLVATETRAEPRDAQAFTAEMVDALLSDLALVEAGALVL FTSREQMRQAVDLLPTAMRGAVLVQNTLPRPQLLARHRERVADGLPSIIFGMQSFGEG LDLPGRLCESLFITKLPFAPPDDPVGEARAEWLRGAGRDPFSELVVPATAIRLAQWVG RAIRTEEDRAHVYCYDKRLVRTGYGQRLLAGLPPFALQRRAA" misc_feature 24215..26383 /locus_tag="Alide2_0021" /note="ATP-dependent DNA helicase DinG; Provisional; Region: dinG; PRK11747" /db_xref="CDD:183295" misc_feature 24398..>24526 /locus_tag="Alide2_0021" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl14882" /db_xref="CDD:197446" misc_feature 25976..26323 /locus_tag="Alide2_0021" /note="CRISPR/Cas system-associated DinG family helicase Csf4; Region: Csf4_U; cl09250" /db_xref="CDD:187934" gene 26402..27031 /locus_tag="Alide2_0022" /db_xref="GeneID:10481038" CDS 26402..27031 /locus_tag="Alide2_0022" /EC_number="2.7.7.7" /inference="protein motif:PRIAM:2.7.7.7" /note="PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; SMART: Exonuclease" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_004385978.1" /db_xref="GI:330822675" /db_xref="InterPro:IPR006055" /db_xref="InterPro:IPR013520" /db_xref="GeneID:10481038" /translation="MPSPIAVIDFETTGMTPAQGARATEVAIVLMEGERVVDRFASLM KTGVWIPPFITRLTGITNAMVDAAPAAESVMREAARFVGDAPMVAHNAAFDSRFWQSE LRHAGLDAPHPFACTVLLSRRIYPDAPSHSLGRLTDHLGLPRTGRAHRALADAEMAAA LLARMQHELCRRFGLDWPDHALLMRLQRCARQSMGRMLLEQRQIANASG" misc_feature 26417..26839 /locus_tag="Alide2_0022" /note="DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127" /db_xref="CDD:176648" misc_feature order(26426..26437,26441..26443,26669..26674,26678..26686) /locus_tag="Alide2_0022" /note="active site" /db_xref="CDD:176648" misc_feature order(26426..26428,26432..26434,26684..26686) /locus_tag="Alide2_0022" /note="catalytic site [active]" /db_xref="CDD:176648" misc_feature order(26426..26437,26441..26443,26669..26674,26678..26683) /locus_tag="Alide2_0022" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176648" gene 27098..27577 /locus_tag="Alide2_0023" /db_xref="GeneID:10481039" CDS 27098..27577 /locus_tag="Alide2_0023" /inference="protein motif:PFAM:PF00877" /note="PFAM: NLP/P60; KEGG: ajs:Ajs_0001 NLP/P60 protein" /codon_start=1 /transl_table=11 /product="NLP/P60 protein" /protein_id="YP_004385979.1" /db_xref="GI:330822676" /db_xref="InterPro:IPR000064" /db_xref="GeneID:10481039" /translation="MRSLALPALMLAAGLLAAGCGTAPHGAPRASAYPRLSSEQSSDI AIHALGLVGTPYRYGGNTPDGGFDCSGLIGYVYGSRAGVAPPRTVALLSGFGEPVDED ELRTGDLVVFGGSRPTHAGIYVGGGRFVHAPSTGGTVRLDHLQSRYWAQQHASFRRP" sig_peptide 27098..27178 /locus_tag="Alide2_0023" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.479 at residue 27" misc_feature 27254..27571 /locus_tag="Alide2_0023" /note="NlpC/P60 family; Region: NLPC_P60; cl11438" /db_xref="CDD:196233" gene 27616..28719 /locus_tag="Alide2_0024" /db_xref="GeneID:10481040" CDS 27616..28719 /locus_tag="Alide2_0024" /EC_number="2.5.1.54" /inference="protein motif:TFAM:TIGR00034" /note="TIGRFAM: DHAP synthase, class 1; KEGG: ajs:Ajs_0002 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA" /codon_start=1 /transl_table=11 /product="phospho-2-dehydro-3-deoxyheptonate aldolase" /protein_id="YP_004385980.1" /db_xref="GI:330822677" /db_xref="GO:0003849" /db_xref="InterPro:IPR006218" /db_xref="InterPro:IPR006219" /db_xref="GeneID:10481040" /translation="MTLTDRPHPTPSTHDTTRIDDLRIKAVRPLITPAILEEWLPASD AAQALVEESRLQISRVLHGQDDRLIVVVGPCSIHDHDQAMEYARQLLAQARALAQDLL IVMRVYFEKPRTTVGWKGYINDPHLDGSFAINEGLERARALLLDILALGLPVGTEFLD LLSPQFISDLVSWGAIGARTTESQSHRQLASGLSCPVGFKNGTDGGVKVAADAIQAAQ APHAFMGMTKMGQAAIFETRGNRDCHVILRGGKAPNYGAADVQAACDLLEKAGQRAQV MIDLSHANSSKQHARQITVAAEVARQIAAGDARITGVMIESHLEEGRQDIVPGQALRH GVSVTDACISFAQTVPVLEQLAAAVRARRAAAS" misc_feature 27655..28680 /locus_tag="Alide2_0024" /note="NeuB family; Region: NeuB; cl00496" /db_xref="CDD:186036" misc_feature 27787..28674 /locus_tag="Alide2_0024" /note="DAHP synthetase I family; Region: DAHP_synth_1; pfam00793" /db_xref="CDD:189723" gene 29312..32932 /locus_tag="Alide2_0025" /db_xref="GeneID:10481041" CDS 29312..32932 /locus_tag="Alide2_0025" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold; Diguanylate cyclase, predicted; GAF; KEGG: dia:Dtpsy_0021 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; GAF" /codon_start=1 /transl_table=11 /product="PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase" /protein_id="YP_004385981.1" /db_xref="GI:330822678" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10481041" /translation="MTDISAIELMERQTQEEALAHAHLLRVQQRIADLQQPLEQVLEQ AARAACEITGAAGAVIALRGEAPLDVQARAGEAPRPPPEAAEALWRRLEQLPGEAGDM SADHVQDTEEGAPARHFVAMPLRTGPLLAGMLQVIAAPGQGFAPRHLGHLHVLAESLG AMVQLRRVHGQLCASERQYRSLFAEHPQPMWVCERDSLRLLLANHAMARQYGYDAHEL PGMDMRMLWAPEHRDEADSAMTMCSDERAARSPALAPTVWHHMRKDGTRIDMEVFVGD TEFDGRPAWQILANDITERYRIEEELARLNRAKRLRSACSETLVRATSESDLLHAVCR AAVEIGGYRMGWVGMARNDSRKRIEVVAHAGAAREYLEHMQLSWSPQENGGQGPASVC LRSGRTVIVRDVQDSPALKGWTERMARLGLHAVVCLPLRDARRTFGLLTLSAPQVLHV GPQETQLLEAMAADLAFGIQNLRARAEQQRLQAAMVKVATAVSAGTGGAFFERLAHHM ADTLSAQVACVVRLQAPVQGEPLQAVTLSHVCGGVAQPTGAYALDGTPSQELLRQGQL VIRDHLTQRYPRDAVLARAGVRSYVGRQLASSDGTPMGMVMVMFREPLAQVEFVCSAL QIFAARASAELQRQMDDARIRHQASLLDRARDAIIVRDLEHRITFWNEGAERMYGWSR EEALGRSMASLLHHDPEDFLHATAQVLQHGDWSGEIVQRSRNGRSIEVEGRWTLVRND QGEPESILAIDSDIGPRKSHEREIQRLAFFDPLTGLPNRAQFMQRMGHALATARRQHQ GGALLFIDLDNFKTLNDTLGHDQGDRLLQLVAQRLSTCVRSVDTVARLGGDEFVVLLE QLTAHAATLAEHANKVGEKILNVLCVPYALAGHQYRSTPSIGIALFDDTPTSMGDLLK QADLAMYQAKNAGRSTLRFFDPGMQRAVDERATLEADLRNALSQQEFTLHYQPQVDSR GGILGVEALLRWTHPQRGMVSPAQFIPVAEETGLILPLGRWVLHKACTLLAAWQKFPG LAHLTMAVNVSSRQFRDPGFVGDVARVLAVTGAPSAQLKLELTESLLVEDMVSTIATM EALRAHGVGFSLDDFGTGYSSLAYLKRMPLEQLKIDRSFVRDLLADENNAAIVRTIVA LAASLGLSVIAEGVETDEQRNWLTRAGCTVYQGYFFNRPLSSDRLDGLLRSYLGPPGG LD" misc_feature 29834..30217 /locus_tag="Alide2_0025" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 29840..30013 /locus_tag="Alide2_0025" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 30239..30718 /locus_tag="Alide2_0025" /note="FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203" /db_xref="CDD:32385" misc_feature 30290..30718 /locus_tag="Alide2_0025" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 31256..31603 /locus_tag="Alide2_0025" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 31271..31573 /locus_tag="Alide2_0025" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(31319..31321,31331..31333,31349..31351,31388..31399, 31469..31471,31484..31486) /locus_tag="Alide2_0025" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(31379..31381,31391..31393,31412..31414,31421..31426, 31505..31507,31511..31513) /locus_tag="Alide2_0025" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 31616..32107 /locus_tag="Alide2_0025" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(31727..31729,31856..31858) /locus_tag="Alide2_0025" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(31742..31744,31751..31756,31766..31768,31778..31780, 31844..31846,31850..31861) /locus_tag="Alide2_0025" /note="active site" /db_xref="CDD:143635" misc_feature order(31832..31834,31934..31936) /locus_tag="Alide2_0025" /note="I-site; other site" /db_xref="CDD:143635" misc_feature 32159..32866 /locus_tag="Alide2_0025" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(32999..33802) /locus_tag="Alide2_0026" /db_xref="GeneID:10481042" CDS complement(32999..33802) /locus_tag="Alide2_0026" /inference="protein motif:PFAM:PF09339" /note="KEGG: dia:Dtpsy_0022 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004385982.1" /db_xref="GI:330822679" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10481042" /translation="MARTRQIDFDEGADSRRFVTALARGLDVLACFHMDEKWLANAEI AARTGLPKPTVVRLAYTLCVLGYLRHSRESGKYALGDSVAALGITMVSNLKLRRIARP YMQDLADRYDISVSLGIRNGLSVLYVENCRSGAPLSLGLDLGSRIPVAETAMGHALLA VMEPRERERLLAEVRQAEPARWPRLREAIEAGCAHWQARGFTVVVRDWQTDIAGVGAA IRQPDGRVITFNAGGSASKFPRELLEQEIGPQLARMVKGLESFVRSDDA" misc_feature complement(33476..33748) /locus_tag="Alide2_0026" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(33014..33745) /locus_tag="Alide2_0026" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(33050..33400) /locus_tag="Alide2_0026" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 33989..34960 /locus_tag="Alide2_0027" /db_xref="GeneID:10481043" CDS 33989..34960 /locus_tag="Alide2_0027" /inference="similar to AA sequence:KEGG:Ajs_0005" /note="KEGG: ajs:Ajs_0005 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004385983.1" /db_xref="GI:330822680" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481043" /translation="MTRPLFSRRTLALLLAAGFAAGPALAQADRFPNRPIKVLIGFTA GGSTDVPFRVLAENASKILGQPVIIENKPGAGGVLPAQMMQNTPADGYTLAQIPLPVF RLPYTQKINWDPATDLQYVIGLAGYAFGLVVPADSPIKSMQDYIAYAKTHPGKLNYGT PGALTTLHLTMENIAMQAGVTLNHIPFKGNSESLQAVLGGHVMSVADTPGWAPYVEQG KLRLLSTWGDKRSAKFPNTPTLKESGINLVQTSPFGLAAPKGTDPKVVQVLHDAFKKA MEMPNYKESLAKFDMDTYYMDSATYRQYALDTMKTEKVIIDKLGLGK" sig_peptide 33989..34069 /locus_tag="Alide2_0027" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.889 at residue 27" misc_feature 34079..34957 /locus_tag="Alide2_0027" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 34139..34951 /locus_tag="Alide2_0027" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(34971..35999) /locus_tag="Alide2_0028" /db_xref="GeneID:10481044" CDS complement(34971..35999) /locus_tag="Alide2_0028" /inference="protein motif:PFAM:PF00441" /note="PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: axy:AXYL_04409 acyl-CoA dehydrogenase, C-terminal domain-containing protein 1" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004385984.1" /db_xref="GI:330822681" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481044" /translation="MDFALNEEQQMLQASARRFLADHHPLARARRALPWSDGAQQRLW KEMAAMGWMALLLPEAHGGLELGLTEASLVAEEAGRQLLNLPWASSAVLLALWFKAAP NDAPSVLRDAAQAATAGTRALHCVADTDAWWDHAGQCSDIVVVRGWHDGAAPLRIALV DAAQVAAAPALDPTLRQGAAARMPLQWHTLDVPARQRMHARAAHRLMLAAELVGVGQA ALDMASAHAKERVQFGKPIGSYQALKHQLANAWMGVDNARLAVLYATAALDGGLPDAR FACAVAEYTAIDGALQSTRTAIQVHGGMGFTWEHDAHLLLKRAQHLAARLGGASRALA QVETLTLP" misc_feature complement(<35715..35990) /locus_tag="Alide2_0028" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(35064..>35363) /locus_tag="Alide2_0028" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" gene complement(36004..37191) /locus_tag="Alide2_0029" /db_xref="GeneID:10481045" CDS complement(36004..37191) /locus_tag="Alide2_0029" /inference="protein motif:PFAM:PF00441" /note="PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: axy:AXYL_04410 acyl-CoA dehydrogenase, middle domain-containing protein 12" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004385985.1" /db_xref="GI:330822682" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481045" /translation="MQVGYPAEDEAFRLTLREWFETHYPRFKAGWPVQPDPNELAWRR AWEDYVCRAGWSGLGWPLEYGGKAWPLTRQAIFHEEQARIGAPLGVNIIGHGILAPTL IHFASAAQKARYLPGILANRDIWCQGYSEPGAGSDLAALATRAERRGDHYVLNGHKIW TSFAHIADHCFVLARTDPGAQRHKGISFLLVDMKSPGVRVEPIRQITGEADFNEVFFE DVRVPLDALVGEENGGWRLAMAAASFERGTYFIPRQVRFAQEVEALARLAAGISREGG ESALQDPHLRREIARLAVDSHVLRLKGLRALTHALRGGPPGAEGSSAKLHWSEAHQKM MSIAMELLGERTLQGPGPAGADPAAALWARDYLWTRAETILAGTSEVQRNILAEQMLG LPR" misc_feature complement(36013..37185) /locus_tag="Alide2_0029" /note="pimeloyl-CoA dehydrogenase, large subunit; Region: pimC_large; TIGR03204" /db_xref="CDD:132248" misc_feature complement(36016..37170) /locus_tag="Alide2_0029" /note="Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Region: ACAD_fadE6_17_26; cd01152" /db_xref="CDD:173841" misc_feature complement(order(36706..36708,36712..36714,36784..36789, 36802..36807,36811..36813)) /locus_tag="Alide2_0029" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:173841" misc_feature complement(order(36028..36030,36061..36066,36640..36642, 36784..36786)) /locus_tag="Alide2_0029" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173841" misc_feature complement(36457..36459) /locus_tag="Alide2_0029" /note="catalytic base [active]" /db_xref="CDD:173841" gene complement(37238..38203) /locus_tag="Alide2_0030" /db_xref="GeneID:10481046" CDS complement(37238..38203) /locus_tag="Alide2_0030" /inference="similar to AA sequence:KEGG:AXYL_04411" /note="KEGG: axy:AXYL_04411 extra-cytoplasmic solute receptor family protein 110" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor family protein" /protein_id="YP_004385986.1" /db_xref="GI:330822683" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481046" /translation="MIKQLMAGIALAAAALCGPAQAQNYPSKPVTIVVPFAPGGATDI MARTLAERLNKRLGQPVIVENKPGAGTMIASEHVARAQPDGHTVLLAASSLGIAPALY AKVNYDPVKDFTPISLVASVVHVLQVHPSIPVKNVAELIAWVKANPGKANYGSVGAGT STHLESELFNTMAGVKMTHVPYKGSAPALMDLVGGNLQVMFDAWASSGPFVKDGKTRL LAVTTAQRSKLLPDVPTVAESGLPGYEAMPWLGFVAPAGTPAAAVNRFHAELMEVLKE PEVQDKFRALGLDIIGNTPQQFADFIKRDIVKWAKVVKDSGAKAD" sig_peptide complement(38135..38203) /locus_tag="Alide2_0030" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 23" misc_feature complement(37253..38134) /locus_tag="Alide2_0030" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(37250..38071) /locus_tag="Alide2_0030" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(38241..40334) /locus_tag="Alide2_0031" /db_xref="GeneID:10481047" CDS complement(38241..40334) /locus_tag="Alide2_0031" /inference="protein motif:PFAM:PF02629" /note="KEGG: rme:Rmet_0842 CoA-binding; PFAM: CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding" /codon_start=1 /transl_table=11 /product="CoA-binding domain-containing protein" /protein_id="YP_004385987.1" /db_xref="GI:330822684" /db_xref="InterPro:IPR003781" /db_xref="InterPro:IPR013650" /db_xref="GeneID:10481047" /translation="MTTHRLEPLLNPASIAIVGASSNPARIGGMPLAHLTRFGYAGRI YPINPKYEEVFGLRCWRDIEALPAAPDLAVLAIAAQDVLPMLRRCAAKGVRAAIVYAA GFAEAGAQGAALQAELEAFVAGTDMVVAGPNAMGFANLNSQAHTSFASVFNTAPMQQG PGSVSLLTQSGNVCAAVYAIARRLGVDFSHFINTGNEACVDFAQYLEYLAQDAATQVC VGYMEELRDGPRFIAAAEEFARRDKLLVLYKAGETDKGAQAVRSHTSALAGDQAIYRA AFRQLDIIQSHDFVQMAQLAHLAGYRHRRAGRRVAIITISGALGAILADKFIGAGLDV PTLPQALQDQLRAGIPDYGMVSNPVDVTGNVVNDPGFVRTAMQALAQSDAVDTVLVYA PGYLLDRMADDLCAVSRQYPKLFVAIDTGAATAREQLRAGGVPVFEDIGVATSALAPF LLWQERRRRNRWMAVRRQSAPARAALPDSLDEYRTKRLLAQHGVPAAPERVAATADEA AAAADAIGYPVVIKVLSPDIAHKTEAGGVRLRLADAAQVRQAFGEVLASCRRHDPRAR IEGILVCRMESGVAELIVGATRDPVFGMTLTVGLGGVLTELYQDVSHRVLPVDEAMAR EMLGELKAFPLLAGYRGRPPGDVDAACAAIAAFSRAVLALGDQVAEVEVNPLLVKEAG QGACMLDALAIPSGQ" misc_feature complement(38991..40319) /locus_tag="Alide2_0031" /note="acetyl coenzyme A synthetase (ADP forming), alpha domain; Region: AcCoA-syn-alpha; TIGR02717" /db_xref="CDD:131764" misc_feature complement(<40047..40310) /locus_tag="Alide2_0031" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(<38244..38792) /locus_tag="Alide2_0031" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042" /db_xref="CDD:31244" gene complement(40349..41149) /locus_tag="Alide2_0032" /db_xref="GeneID:10481048" CDS complement(40349..41149) /locus_tag="Alide2_0032" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: rme:Rmet_0841 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004385988.1" /db_xref="GI:330822685" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10481048" /translation="MAFDTLEIENHGAVRRILLAREAQRNAQSQQMLDELMTALDDAR HDDGVHAVVIGGKGAHFSAGHDLKQAQAERSSFTVEERWAYEELRYFDYSLRIWDFPK PTIAQVQGACVAGGFMIANMCDLVVAGESAYFSDPVGHTLGAAATEVLIHPWVMGARK AKELLFTGGRLSASEAHAIGMVNRVVSDAGLGESTLALAQQIAKAPPFGLRLIKRSIN RTLDAQGLRTALAAHFDTHQLSHLSEGFLTARDRGLANAIQKNREASA" misc_feature complement(40352..41149) /locus_tag="Alide2_0032" /note="enoyl-CoA hydratase; Provisional; Region: PRK08290" /db_xref="CDD:181356" misc_feature complement(40544..41134) /locus_tag="Alide2_0032" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(40736..40738,40739..40741,40805..40813, 40817..40819,40949..40963,40973..40975,41069..41071, 41075..41077)) /locus_tag="Alide2_0032" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(40805..40807,40955..40957)) /locus_tag="Alide2_0032" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(40544..40549,40556..40558,40601..40603, 40610..40612,40643..40645,40652..40657,40661..40666, 40670..40675,40688..40693,40703..40711,40715..40717, 40733..40738,40769..40780,40841..40843,40874..40876)) /locus_tag="Alide2_0032" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 41244..42008 /locus_tag="Alide2_0033" /db_xref="GeneID:10481049" CDS 41244..42008 /locus_tag="Alide2_0033" /inference="protein motif:PFAM:PF09339" /note="KEGG: bpt:Bpet3285 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004385989.1" /db_xref="GI:330822686" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10481049" /translation="MDTPQGTAGAQSLRRALQLLRLLAQHQEDGIRLTEVMAASGLER STAHRLLSCLVEEQFAERDPGSKAYRLGLDAMQLGFASMRRVPLVDHCRPLMQRLARM SGDTVFLVIRQGDYCLCLHREEGHFPVKVFTTDVGGRRLLGLGAGGLALMAQLSDAEV ERIFDRHVEEYTQACFTRERLQQAVRRTRAAGYADIVDTLTVGVSGVGATFAASTGTL AAISFGAITPRLPPERKREMARLLMDQLVSNQAGGA" misc_feature 41319..41975 /locus_tag="Alide2_0033" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 41319..41546 /locus_tag="Alide2_0033" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(42268..42873) /locus_tag="Alide2_0034" /db_xref="GeneID:10481050" CDS complement(42268..42873) /locus_tag="Alide2_0034" /inference="protein motif:PFAM:PF09411" /note="PFAM: Lipid A 3-O-deacylase-related; KEGG: dia:Dtpsy_0024 hypothetical protein" /codon_start=1 /transl_table=11 /product="lipid A 3-O-deacylase-like protein" /protein_id="YP_004385990.1" /db_xref="GI:330822687" /db_xref="InterPro:IPR018550" /db_xref="GeneID:10481050" /translation="MQPLVSPGLLCLSGAGRHGRRPLLSATAACLLCAIPPAFAQQAA HSPSVYLQASRAQHGTDAVTLGATLPFGTWSMPLWGGELRGHWDMYLSRWSFDGIAGH DSTLVLGVKPTLRLRPDQGRSAWFWEAGVGGTLANHRYRTAEREFSTRFNFASYLGVG INLGARRQHELLLSVEHLSNASIKKPNPGLNFVHLRYALHF" sig_peptide complement(42751..42873) /locus_tag="Alide2_0034" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.981 at residue 41" misc_feature complement(42271..42702) /locus_tag="Alide2_0034" /note="Lipid A 3-O-deacylase (PagL); Region: PagL; pfam09411" /db_xref="CDD:150172" gene complement(42988..43581) /locus_tag="Alide2_0035" /db_xref="GeneID:10481051" CDS complement(42988..43581) /locus_tag="Alide2_0035" /inference="protein motif:PFAM:PF07480" /note="PFAM: Domain of unknown function DUF1520; KEGG: ajs:Ajs_0007 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004385991.1" /db_xref="GI:330822688" /db_xref="InterPro:IPR011085" /db_xref="GeneID:10481051" /translation="MTRFKITQRLACTALAAALAGMAIPSMAQPAPGAGPTAEQAQRQ GPRAMTPEQRQQFMLQRAEAFKQKLQLTPAQEPAWNTFMQSMRPDAGSRKAWLEMKDM DKLTIPERIDRMRAIRAQRAAEMDRRGDAVKAFYATLTPAQQKTFDAEGTRMYGRRGA QWDRHMGDHKGDWRGPRNGMHRHGPGPMPAPGAPAAQ" sig_peptide complement(43495..43581) /locus_tag="Alide2_0035" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 29" misc_feature complement(43132..43404) /locus_tag="Alide2_0035" /note="Domain of Unknown Function (DUF1520); Region: DUF1520; pfam07480" /db_xref="CDD:148852" gene 43798..44739 /locus_tag="Alide2_0036" /db_xref="GeneID:10481052" CDS 43798..44739 /locus_tag="Alide2_0036" /inference="protein motif:PFAM:PF04381" /note="PFAM: Putative exonuclease, RdgC; KEGG: ajs:Ajs_0008 recombination associated protein" /codon_start=1 /transl_table=11 /product="exonuclease RdgC" /protein_id="YP_004385992.1" /db_xref="GI:330822689" /db_xref="InterPro:IPR007476" /db_xref="GeneID:10481052" /translation="MFKNIIVYRIAPEWHAELTQLEEALAKAPFQECGATQEKSSGWV PPRGEAHGLLAESVGGQWILRFMTESKMLPGTVLARKVKEKAAQIEQQTGRKPGKKET RELKDEAKLDLLPMAFTKQGSTWLWVDCEARLLVLDTGAQGRADEVVTALVEALPGLS VALVDTQTSPQAAMAHWLKEQEPPAGFSIDRECELKAADESKAVVRYARHPLDIEEVQ AHIQAGKLPTKLAMTWDDRVSFVLTEGLQLKKLAFLDTVFEGQPQDDGGFDADVAIAT GELSKLIPDLIEALGGEGRTELGSPAQPPQDDGGAPF" misc_feature 43798..44688 /locus_tag="Alide2_0036" /note="Putative exonuclease, RdgC; Region: RdgC; cl01122" /db_xref="CDD:194044" gene 44759..46012 /locus_tag="Alide2_0037" /db_xref="GeneID:10481053" CDS 44759..46012 /locus_tag="Alide2_0037" /inference="protein motif:PFAM:PF07670" /note="PFAM: Nucleoside recognition; KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein" /codon_start=1 /transl_table=11 /product="nucleoside recognition domain-containing protein" /protein_id="YP_004385993.1" /db_xref="GI:330822690" /db_xref="GO:0001882" /db_xref="InterPro:IPR011642" /db_xref="GeneID:10481053" /translation="MALNRVWTAFFLIAFATAAVRWLLGEAGIFQALLSAMFDGARAG FEISLGLAGIMALWLGLMRVGEQAGMVELLARLAGPLLRRLFPGVPAGHPAQGAMTLN ISANLLGLDNAATPLGLKAMQELQTLNREPEGQASNAQIMFVVMNTAGLTLIPTSVIA IRQSVALKQGLGAGFNAADIFLPTLLVTFASLLAGVLSVAVAQRLPLWRARLLLPLLA VGSLLAAAVAALSRLPAERAAQVAGTTGAAVILGVVALFLLAGAWRRVNMYYAFIDGA KEGFGVAVQIIPYLIAILVAIGVFRAAGCMDALLAALGAGVAALGWNTDFLPALPVGL MKVLSGAGARGLMIDVLQTHGVDSFVGRLAAIIQGSTETTFYVLAVYFGSVGVKHTRH ALACALLADAVGLIAAIGVGYAMLR" misc_feature 44840..45367 /locus_tag="Alide2_0037" /note="Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]; Region: SpmA; COG2715" /db_xref="CDD:32608" misc_feature 45548..46006 /locus_tag="Alide2_0037" /note="Nucleoside recognition; Region: Gate; cl00486" /db_xref="CDD:186029" gene 46499..46750 /locus_tag="Alide2_0038" /db_xref="GeneID:10481054" CDS 46499..46750 /locus_tag="Alide2_0038" /inference="similar to AA sequence:KEGG:Dtpsy_0031" /note="KEGG: dia:Dtpsy_0031 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004385994.1" /db_xref="GI:330822691" /db_xref="GeneID:10481054" /translation="MTDSALIPLPDHLAVDPRSPYHVAAVFQQQADIGIRFNGKERFD VEEYCVSEGWIKVPAGKTLDRRGRPLLITLKGSVEAFYK" misc_feature 46526..46744 /locus_tag="Alide2_0038" /note="Protein of unknown function (DUF3297); Region: DUF3297; pfam11730" /db_xref="CDD:152166" gene complement(46719..48596) /locus_tag="Alide2_0039" /db_xref="GeneID:10481055" CDS complement(46719..48596) /locus_tag="Alide2_0039" /inference="similar to AA sequence:KEGG:Balat_0053" /note="KEGG: blt:Balat_0053 beta-galactosidase I" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004385995.1" /db_xref="GI:330822692" /db_xref="GeneID:10481055" /translation="MNFLLRSAAALLCSLFVGGAATAKPQVATLIVMPQDLRQNPQIV SDLQRRGINHATVYLTWADVEAQPGHFDFSAYDPYFDQLTQGGLSLVVVLDMGGRAYF DGTGKHFPGRTTVPEWLYRQVPDGFMKNFSGQSTPQPDFMNPTVRQFSAQFVRNAVAH LSQRYPGKVTAYSIGLQEEHEIKYGQTGYQWRDYADAAQAAFRQQTGAPLPVINYTSD IALGLPRTEPLLHAHKQFREANLKEATCFYADAIRSQGGRAMSYFGELFTAHDGIYAT SVAEQLADCLDIAVIDYNFYDGYSLSPDARVLPMLANYMASVGYKQIMVGAYAEQWER VKKSTELLPVISRTLSTALAQPNVIGYEVGGLQRQLDTHLTGTVDLDKLQALRVQPPV PATASTGKKLTVGILASTSNYYVWHGDRSGGVNVHREALLEAYNLLSTQPGFDVHVIG EKNLQEDDLLQRLNAIVVPHQAALPASIKQQLKAYWKKGGTLVQDMRLGEFDENGKPV YDWMHEVFGIENITWRPRGGIFLTDDGQILRLKPARKLYTGYAAMTPRPGYRLLATDI LNKRQGIMVRGERTLVFGFTPQLVEDATQAMWQQIFVREIANAVRCPTLATCKTPPRS P" sig_peptide complement(48525..48596) /locus_tag="Alide2_0039" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.974 at residue 24" misc_feature complement(<47985..48446) /locus_tag="Alide2_0039" /note="Beta-galactosidase; Region: Glyco_hydro_42; cl03154" /db_xref="CDD:155315" gene complement(48694..49131) /locus_tag="Alide2_0040" /db_xref="GeneID:10481056" CDS complement(48694..49131) /locus_tag="Alide2_0040" /inference="protein motif:TFAM:TIGR02044" /note="TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: dia:Dtpsy_0035 transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR" /codon_start=1 /transl_table=11 /product="MerR family transcriptional regulator" /protein_id="YP_004385996.1" /db_xref="GI:330822693" /db_xref="GO:0003677" /db_xref="GO:0005507" /db_xref="GO:0016563" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR011789" /db_xref="InterPro:IPR015358" /db_xref="GeneID:10481056" /translation="MSRQIAAPAQDWPVPIGTAAERAGVSARMVRHYESLGLLTGVAR TSNGYRQYTEADVHTLRFIRRARDLGFSMEEIAALLGLWQDKARASSQVKQIAQKHIA SLSERIAAMQAMQRSLQALVGCCHGDDRPDCPILDDLAGPGAH" misc_feature complement(48712..49086) /locus_tag="Alide2_0040" /note="Cu(I)-responsive transcriptional regulator; Region: CueR; TIGR02044" /db_xref="CDD:131099" misc_feature complement(48712..49086) /locus_tag="Alide2_0040" /note="Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators; Region: HTH_CueR; cd01108" /db_xref="CDD:133383" misc_feature complement(order(48982..48990,49039..49041,49081..49086)) /locus_tag="Alide2_0040" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133383" misc_feature complement(order(48715..48720,48727..48729,48733..48735, 48739..48753,48766..48768,48787..48792,48799..48801, 48811..48813,48829..48831,48841..48843,48850..48852, 48859..48864,48883..48885,48895..48897,48922..48927, 48937..48939,48946..48948)) /locus_tag="Alide2_0040" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133383" misc_feature complement(order(48733..48735,48757..48759,48862..48864)) /locus_tag="Alide2_0040" /note="copper binding site [ion binding]; other site" /db_xref="CDD:133383" gene complement(49128..49325) /locus_tag="Alide2_0041" /db_xref="GeneID:10481057" CDS complement(49128..49325) /locus_tag="Alide2_0041" /inference="protein motif:PFAM:PF00403" /note="PFAM: Heavy metal transport/detoxification protein; KEGG: dia:Dtpsy_0036 heavy metal transport/detoxification protein" /codon_start=1 /transl_table=11 /product="Heavy metal transport/detoxification protein" /protein_id="YP_004385997.1" /db_xref="GI:330822694" /db_xref="GO:0046872" /db_xref="InterPro:IPR006121" /db_xref="GeneID:10481057" /translation="MQYTFQVQGMTCGHCERAVVHAVRQVDTDAIVKVDLATGQVAVE SDQPREVLAAAIQEEGYKVAA" misc_feature complement(49131..49325) /locus_tag="Alide2_0041" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cl00207" /db_xref="CDD:193707" gene 49495..51726 /locus_tag="Alide2_0042" /db_xref="GeneID:10481058" CDS 49495..51726 /locus_tag="Alide2_0042" /EC_number="3.6.3.4" /inference="protein motif:TFAM:TIGR01525" /note="TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_0037 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_004385998.1" /db_xref="GI:330822695" /db_xref="GO:0004008" /db_xref="GO:0005524" /db_xref="GO:0046873" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR006403" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="GeneID:10481058" /translation="MNSASLRTADAPDTLDLGVGGMTCASCVGRVERALRKVPGVRDA TVNLATERAHIVVDAAAAAGMDAVLRRAVRNAGYEPRSVAEQDADAAAEQSPWAGFTS VAIGLLLSAPLVLPMFGDLFGRHWMLPAWAQFLLATPVQFILGARFYKAGWHAAKALT GNMDLLVALGTSAGYGLSLWLWWTAAPGHAPHLYFEASAVVVTLVLLGKWLEARAKRQ TTAAIRALHALRPEVAHLLVRDGEVDVPIAEVMAGDRLVVRPGERIPVDGLVQEGHTQ VDESMLTGEPLPVVREAGGTLTGGSINGDGRIVMQVTAVGGETVLARIIRLVEDAQAA KAPIQRLVDQVSAVFVPAVIAIALVTLAGWLWAGVGLETALIRAVAVLVIACPCALGL ATPAAIMAGTGVAAKYGILIKDAEALEVAHRVGTVAFDKTGTLTVGRPRLTAFHAHPE SDEPALLSAVAAVQSGSEHPLARAVVAAAQERGLALAQPEGVRAVPGRGTEGEVAGRS YLVGSLRWMQELGVDLGPLAGQAAALQGQGATVSAVAERVTQGLAARALLAFGDEPKP GAREALERLKARGVRCVMISGDNRGAAEAMARRLGLDPAAGEVMAEVLPGDKAAAVAA LKVGGKVVAMVGDGVNDAPALAAADVGMAMGNGTDVAMHAAGITLMRGEPRLVAAALD VSHRTVAKIRQNLFWAFAYNVAGIPLAALGYLNPVVAGAAMALSSVSVMTNALLLKRW RAE" misc_feature 49534..51720 /locus_tag="Alide2_0042" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature 49540..>49647 /locus_tag="Alide2_0042" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature order(49558..49566,49573..49575) /locus_tag="Alide2_0042" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature 50092..50751 /locus_tag="Alide2_0042" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature 51112..>51303 /locus_tag="Alide2_0042" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 51853..53502 /locus_tag="Alide2_0043" /db_xref="GeneID:10481059" CDS 51853..53502 /locus_tag="Alide2_0043" /inference="protein motif:PFAM:PF00015" /note="KEGG: ajs:Ajs_0020 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_004385999.1" /db_xref="GI:330822696" /db_xref="GO:0004871" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="GeneID:10481059" /translation="MTMYALMRWFSIRMRMIGAIGVVLTLLFMLGGAGMLGMFRLHGL SQDFIAQPHAAVRLLGELRGEMGQIRQAEKDMIIHYERPEAVRAAHTQWLTALDRAKA VATRIDGLNLEQEQALARDIAKHLDTYREQFAHVARQLEEGGYDTATIANRMSTKAVA QFVVAAEKLQALDKALGAEVDGAIARQGSIAEQTQWLFGLAVLITVAVVVPFTLLNMV SICRPLEAARALAQSIAGGNLAQRIEVDGRDEVADLQRALLDMQGGLGALVSQVRDAS GNIATASQEIAMGNQDLSARTEQTASNAQEAVAALSQLTATVQQTASSSQVANQLVAS ASGTATRGGQVVQQAVSSMHEISASSRKIGDIIGLIDSIAFQTNILALNAAVEAARAG EQGRGFAVVAGEVRNLAQRSAAAASEIKGLIQSSVQAVEGGVRHVEDAGKAMQEIVVS VQRVTDMIGEIHSAATEQAAGIGEVNASVGEIDRMTQQNAALVEESAAAAESLREQAA RLSQVVQQFQLADGQQAAARAAAPARAALESDPALPRLGVA" misc_feature 52285..53319 /locus_tag="Alide2_0043" /note="Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840" /db_xref="CDD:31182" misc_feature 52444..52647 /locus_tag="Alide2_0043" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 52816..53409 /locus_tag="Alide2_0043" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(53658..56753) /locus_tag="Alide2_0044" /db_xref="GeneID:10481060" CDS complement(53658..56753) /locus_tag="Alide2_0044" /inference="protein motif:TFAM:TIGR00914" /note="KEGG: aav:Aave_0038 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="CzcA family heavy metal efflux pump" /protein_id="YP_004386000.1" /db_xref="GI:330822697" /db_xref="GO:0008324" /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR004763" /db_xref="GeneID:10481060" /translation="MKRLIHYALHQPLFVVLGTLLFAMAGVIAFKNLSVEAFPDVTDT QVTIIALYPGRAAEEVEKQVTLPIEVALSGLPNAIRVFSHTQFGLSFTVVTYDDNASV HIVRQQVGERLRSVDLPPGVEAEIAPNATPVGEIMRYRLRGDGYSTTELRSTEDWVVE RALRQVPGVADVVAMGGSIKQYEVQPDLDKLRAYKLTFQNLLDALGRGNANAGGSYVA QGTQQYAIRGIGLLQSSEDIGRIVVAAHGGTPVLIRDVAQIRVGAVPRLGTVGQDDDD DVVTGIVVMRKGENPSVVLKDVKAKIADLNARSLPPGMQIVPFYDRTWLMEKTLTTVF RNLVEGALLVSLVLYIFLSNLRASLAVVVVIPLSLLATFMGLKFMGVPANLLSLGAMD FGIIVDGAVIVIENIMHRLAERGEDMDDRDRRETIIEAASEVGRPTLFSMLIIIAAHI PIFALQRHEGRIFQPMALSVTTALVGSLIFSLTLVPLLAYWMLRRKLPHGDNRVVVSA KRLYGPVLDWALARRRTVVVISLAMFAVALAAASRLGSEFLPELDEGTIWVNVRLPAS VSNDEAARMLRQVRQALRTVPEVRTTISKAGQPEDGTDPKTISMAEVFVDVKPADQWR AGLTHKQLIEEMDRAVSAIPGLEPAFSQPIRDNVLESISQIDGQIVIKVSGDDLGELK RITQGIEREIKQVPGVYRAEIDRLGDLPQLVIDIDRDRAARYGLNVGDIQDVIEAALA GKATTSLWEGERKFAVAVRLPEDRRAIASLPGTPIATPDGGYTTLGAVASIRETTGAM NIARENGSRTMAIGIFIKDRDMGSVVKDMQERVRARIQLPPSYRVTWSGEFENQERAM KRLSVVVPISLLLIFVLLFDAFKSFKTASLILVNVPLALIGGFIALWVLDIPLSVSAA IGFIALSGQAVLNGVVMLSVYQQLQAGGMGVLEAVRQGSMQRLRTVLMTALLAMLGLL PMALSHEIGAETQRPLAIVVIGGLVTATLLTLVVLPALYVAWFAPRRNGPAPDAPVAI A" misc_feature complement(53784..56753) /locus_tag="Alide2_0044" /note="Putative silver efflux pump [Inorganic ion transport and metabolism]; Region: COG3696" /db_xref="CDD:33492" gene complement(56750..57991) /locus_tag="Alide2_0045" /db_xref="GeneID:10481061" CDS complement(56750..57991) /locus_tag="Alide2_0045" /inference="protein motif:TFAM:TIGR01730" /note="TIGRFAM: Secretion protein HlyD; KEGG: aav:Aave_0039 RND family efflux transporter MFP subunit" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_004386001.1" /db_xref="GI:330822698" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10481061" /translation="MVHSISSRVRASRTTRRPGRGLLALALCAAAVLQGCHKAPTEPA APEAAPPILQSGQLRFPPGHPQLALLAVTEVQPARELVVDLPARLVWNEERTQRVYPA FAGRVSAIRADLGQNVKAGAPLALLASPDFGQAQADTAKARADQALAQQALARQRELF EAGVVARKDLEQAEAEAARARAEAARAAARTSLYGGGGAVDQQLAITAGMGGVVVERN LNPGQEVRPDQSGPGTPALFVVTDPSSLWVLIDARESDLASLRPGDAFALQVPAYPGE TFTGRVTATADAIDPVARTLKVRGLVPNADRRLKAEMLATARVSESRSTGFVVPAAAL TLNGTTHMVYVQRESGVFEPRTVVLGHEGPKNVEVVQGLSAGEKVVTQNVLLLARQFR LAQEASSTGSEAKAQPAKETP" sig_peptide complement(57875..57991) /locus_tag="Alide2_0045" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.813) with cleavage site probability 0.646 at residue 39" misc_feature complement(56831..57742) /locus_tag="Alide2_0045" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene complement(58023..59264) /locus_tag="Alide2_0046" /db_xref="GeneID:10481062" CDS complement(58023..59264) /locus_tag="Alide2_0046" /inference="protein motif:PFAM:PF02321" /note="PFAM: Outer membrane efflux protein; KEGG: xtr:100485479 hypothetical protein LOC100485479" /codon_start=1 /transl_table=11 /product="outer membrane efflux protein" /protein_id="YP_004386002.1" /db_xref="GI:330822699" /db_xref="GO:0005215" /db_xref="InterPro:IPR003423" /db_xref="GeneID:10481062" /translation="MGQAPAGWAQTPPAASGTPTLTLAQALAAARDNSDVALARHALA GARADVLAADHAPAPVLSTKAASIDLQNGVGGGNVVTRKRIDKSIGIDWTWERGDKRA LRTLAAQRALDAAQSDVQDMQTQQLQAALSAYYDLLAAQERLRETREIERGMAELDRV ANLRLKAGDLARQDAARTRIESERARSDSELAELARTQAAVALAQLTARGPGLQACAC DWPAQVAGPAPGGDLLTWAESRADVRAALARVQAAQAELDSAMALRKADVTIGASYDH YPGTSNRLVELRAQIPLQWGYRFEGEIGRAQAMLSAAQEALDKTRRLALLDLQSLQQQ AASAAQRAAGYENGILPRAREVAQSAELAYAKGAIPLTDLLDARRTLRATALEALAAR ADYAKAQGNWLLRTEPQLLLP" gene 59397..60122 /locus_tag="Alide2_0047" /db_xref="GeneID:10481063" CDS 59397..60122 /locus_tag="Alide2_0047" /inference="protein motif:PFAM:PF00072" /note="KEGG: aav:Aave_0041 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal" /codon_start=1 /transl_table=11 /product="winged helix family two component transcriptional regulator" /protein_id="YP_004386003.1" /db_xref="GI:330822700" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10481063" /translation="MRILIVEDDSVLRGVMQRSLADAGHRVDVAASVAEAHHFWCVQP FDAVLLDLNLPLDGVDEGAGGAQLGSGLAVLRAARARGDRTPVLVLTARDRTHERIAG LDAGADDYLGKPYDLAEVEARLRALVRRSRGTQDRTVAGALVLDRHVRRFTLHGLPLE LPAREFEVLWELMTPPGRVVNKRTLSEKLSDFDETLGDNALEAFISRLRKKLAGSGAG IRTLRGLGYMLEAQAAPPADGMP" misc_feature 59397..60095 /locus_tag="Alide2_0047" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 59406..59780 /locus_tag="Alide2_0047" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(59415..59420,59547..59549,59568..59570,59667..59669, 59724..59726,59733..59738) /locus_tag="Alide2_0047" /note="active site" /db_xref="CDD:29071" misc_feature 59547..59549 /locus_tag="Alide2_0047" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(59556..59561,59562..59570) /locus_tag="Alide2_0047" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 59733..59741 /locus_tag="Alide2_0047" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 59814..60083 /locus_tag="Alide2_0047" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(59880..59882,59937..59942,59994..59996,60003..60005, 60027..60032,60057..60059,60072..60074) /locus_tag="Alide2_0047" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 60119..61546 /locus_tag="Alide2_0048" /db_xref="GeneID:10481064" CDS 60119..61546 /locus_tag="Alide2_0048" /inference="protein motif:PFAM:PF02518" /note="KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_004386004.1" /db_xref="GI:330822701" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR013727" /db_xref="GeneID:10481064" /translation="MSTPPQAPPAPPPSLRTRLLRHVLGPLALTWLVGTVASALLANS FTQRAFDRSLLDDAYAIAANVREEPDGLEFPLSSREVKAVLFDQVETVYFAVLREDGT LLAGNASLPAPPPHEGQVYRFSDMRFHGRALRAVRLQLTTPAPFEVITAQTVHSRSVM LRSALLYSLASQVLLLVVLALWLGRAIRQELRPLAMFQQALDQRDARDLAPMRVEAST RDLQRLGRAVNDLLARVAQGVQAQREFAGNVAHELRTPLAGIRALASYGLAQKEPAVW REQLTGIVQSEARASHLVDQLLALALADEARGSMPLRPVPLDQLVRDTVLRFLPRADA AGVDLGALGLEQAVTMQGQPLLIEGVLSNLIDNALRYGVPPAGEAPQVTVELAREEGS VVLSVLDNGPGIAPVQRQQLQQRWVQGRDGERLGQGAGLGLGIVARYAELLGARLEFT PGPQGRGLCARLVFAPLASTPGGEN" misc_feature 60158..61462 /locus_tag="Alide2_0048" /note="heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386" /db_xref="CDD:162333" misc_feature 60194..60604 /locus_tag="Alide2_0048" /note="Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521" /db_xref="CDD:149540" misc_feature 60836..61006 /locus_tag="Alide2_0048" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(60851..60853,60863..60865,60875..60877,60884..60886, 60896..60898,60905..60907,60953..60955,60965..60967, 60974..60976,60986..60988,60995..60997) /locus_tag="Alide2_0048" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 60869..60871 /locus_tag="Alide2_0048" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 61187..61510 /locus_tag="Alide2_0048" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(61205..61207,61217..61219,61226..61228,61307..61309, 61313..61315,61319..61321,61325..61330,61406..61417, 61463..61465,61469..61471,61487..61492,61496..61498) /locus_tag="Alide2_0048" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 61217..61219 /locus_tag="Alide2_0048" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(61319..61321,61325..61327,61406..61408,61412..61414) /locus_tag="Alide2_0048" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(61572..62687) /locus_tag="Alide2_0049" /db_xref="GeneID:10481065" CDS complement(61572..62687) /locus_tag="Alide2_0049" /EC_number="1.3.1.42" /inference="protein motif:PRIAM:1.3.1.42" /note="KEGG: dia:Dtpsy_0040 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal" /codon_start=1 /transl_table=11 /product="12-oxophytodienoate reductase" /protein_id="YP_004386005.1" /db_xref="GI:330822702" /db_xref="InterPro:IPR001155" /db_xref="GeneID:10481065" /translation="MTSLFDPIQAGDLHLANRIAMAPLTRNRSPQAVPRNITATYYAQ RASAGLLITEGTAISAQGQGYSDVPGLYGSDQLDGWKKVTQAVHARGGKIVTQLWHVG RVSHSLLQPGRAAPVAPSAVQANAKTYVVDPETGRGEFMHTCTPRALTAEELPDIVHT YAAAARNAVRSAGFDGVEIHGANGYLLDQFLKDGANRRTDDYGGGIARRARLMLEVTR AVADAIGGGRVGLRLSPVTPANDIHDSNPQPLFEHLARQLAPLSLAYIHVIEGATGGP REVEGRPFDYAAFKAAYRDAGGRGAWMVNNGYDRDMALQAVASGHADMVAFGRAFISN PDLVERLRRNAPLNEWDRPTFYGGGEKGYIDYPAMAD" misc_feature complement(61575..62687) /locus_tag="Alide2_0049" /note="NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902" /db_xref="CDD:32086" misc_feature complement(61632..62681) /locus_tag="Alide2_0049" /note="Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933" /db_xref="CDD:73381" misc_feature complement(order(61698..61706,61710..61712,61770..61772, 61992..61994,62397..62399,62523..62525,62613..62615, 62619..62621)) /locus_tag="Alide2_0049" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73381" misc_feature complement(order(61701..61706,61710..61712,61770..61772, 61971..61973,61992..61994,62133..62135,62139..62141, 62148..62150,62370..62372,62391..62393,62397..62399, 62523..62525,62613..62615,62619..62621)) /locus_tag="Alide2_0049" /note="active site" /db_xref="CDD:73381" misc_feature complement(order(61701..61703,62133..62135,62139..62141, 62148..62150,62391..62393,62613..62615)) /locus_tag="Alide2_0049" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73381" misc_feature complement(62133..62135) /locus_tag="Alide2_0049" /note="catalytic residue [active]" /db_xref="CDD:73381" gene complement(62750..63358) /locus_tag="Alide2_0050" /db_xref="GeneID:10481066" CDS complement(62750..63358) /locus_tag="Alide2_0050" /inference="protein motif:PFAM:PF00043" /note="PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: dia:Dtpsy_0042 glutathione S-transferase domain protein" /codon_start=1 /transl_table=11 /product="glutathione S-transferase domain-containing protein" /protein_id="YP_004386006.1" /db_xref="GI:330822703" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="GeneID:10481066" /translation="MKLYYSPGACSLSPHIVLHEAGLAYEPVLASTKTHKLADGTDFY SINPLGYVPVLELDDGTRLREGPAIVQYLADQAPQKNLAPAPGTLARYRLQEWLSFIG TEVHKGFGPLFAPGTPEEYKPQLKQRLLSRLQWVDGELAGKQYLMGDHFTVADAYLFT VTNWAQFVGLDISQLKNLAAYRERIGARPAVQAAMKAEGLLK" misc_feature complement(62759..63358) /locus_tag="Alide2_0050" /note="glutathionine S-transferase; Provisional; Region: PRK10542" /db_xref="CDD:182533" misc_feature complement(63125..63358) /locus_tag="Alide2_0050" /note="GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_N_Beta; cd03057" /db_xref="CDD:48606" misc_feature complement(order(63134..63136,63146..63148,63299..63304, 63314..63316,63320..63322,63335..63340)) /locus_tag="Alide2_0050" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature complement(order(63161..63166,63203..63208,63329..63331)) /locus_tag="Alide2_0050" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48606" misc_feature complement(order(63134..63136,63143..63145,63158..63160, 63164..63169,63206..63208)) /locus_tag="Alide2_0050" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature complement(62774..63094) /locus_tag="Alide2_0050" /note="GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_C_Beta; cd03188" /db_xref="CDD:48115" misc_feature complement(order(62975..62977,62987..62989,62996..62998, 63011..63013,63038..63040,63050..63052,63062..63064, 63071..63073,63080..63085,63092..63094)) /locus_tag="Alide2_0050" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature complement(order(62777..62779,62789..62791,62795..62797, 62867..62869,62879..62881,62900..62902,63041..63043, 63086..63088)) /locus_tag="Alide2_0050" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature complement(order(62858..62860,62867..62869,62876..62878, 63020..63022,63026..63031,63038..63043,63053..63055)) /locus_tag="Alide2_0050" /note="substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48115" gene complement(63391..63687) /locus_tag="Alide2_0051" /db_xref="GeneID:10481067" CDS complement(63391..63687) /locus_tag="Alide2_0051" /inference="protein motif:PFAM:PF03692" /note="PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386007.1" /db_xref="GI:330822704" /db_xref="InterPro:IPR005358" /db_xref="GeneID:10481067" /translation="MDYRPGCGACCTAPSISSPIPGRPGGKPAGVRCVQLDDDARCRI FGHPGRPPVCASLQPHPAMCGGSRQEAESILSRLERLTQPGAPYTSAAKAMRKA" gene complement(63694..64272) /locus_tag="Alide2_0052" /db_xref="GeneID:10481068" CDS complement(63694..64272) /locus_tag="Alide2_0052" /inference="protein motif:PFAM:PF03358" /note="PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_0044 NADPH-dependent FMN reductase" /codon_start=1 /transl_table=11 /product="NADPH-dependent FMN reductase" /protein_id="YP_004386008.1" /db_xref="GI:330822705" /db_xref="InterPro:IPR005025" /db_xref="GeneID:10481068" /translation="MKLLVFAGSTRQQSFNRRLARIAARMGRDAGAEVTLLELSDLDI PMYNADLEARGTPPDVIRLKEILDAHPAWIICSPEYNGSYTGLLKNTIDWASSPVAGH PVWTDVTRPFAGKVVGVLSASNGALGGLRSQSHLAPLLVNLGCWLAPRNYALARAASA FDAGDDLADEAQRQQVRAVVDQVLWAAQRLCA" misc_feature complement(63799..64272) /locus_tag="Alide2_0052" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 64350..66383 /locus_tag="Alide2_0053" /db_xref="GeneID:10481069" CDS 64350..66383 /locus_tag="Alide2_0053" /inference="protein motif:TFAM:TIGR00136" /note="KEGG: dia:Dtpsy_0045 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose-inhibited division protein A-related" /codon_start=1 /transl_table=11 /product="glucose inhibited division protein A" /protein_id="YP_004386009.1" /db_xref="GI:330822706" /db_xref="InterPro:IPR002218" /db_xref="InterPro:IPR004416" /db_xref="GeneID:10481069" /translation="MDKDGKIASFPLPCPFRPMLYPQEFDVIVVGGGHAGTEAALAAA RMGCRTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMALATDEGGIQFRIL NSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLFQQAVDDLMVEGDRVAGAVTQI GLRFRARAVVLTAGTFLDGRIHVGLNNYAAGRAGDPPAVSLSARLKELKLPQGRLKTG TPPRIDGRSIDFSQCEEQPGDGMPGGVNEGVLPVFSFMGSTVMHPRQVPCWITHTNAR THEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESHQIFLEPEGLTTHEFY PNGISTSLPFDIQYALVRSMRGLENAHILRPGYAIEYDYFDPRSLKSSFETRQIQGLF FAGQINGTTGYEEAAAQGLFAGLNAALQCRGEAPWLPRRDEAYLGVLVDDLVTKGVTE PYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFAAKRDAVSRETERLKS TWVNPRILAAAEAERVLGKAIDHEYNLFDLLRRPDVDYARLMSLDGGKYASGDVSRET LGALSEPVIEQVEIAAKYAGYIDRQKDEVQRAAHYEQLRLPPELDYMQVSALSIEVRQ KLQKHRPETLGQASRISGVTPAAISLLLVHLKKGGFKGFAQPAPTGEGHVVSA" misc_feature 64410..66341 /locus_tag="Alide2_0053" /note="NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; cl11520" /db_xref="CDD:187089" misc_feature 64410..66332 /locus_tag="Alide2_0053" /note="Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]; Region: GidA; COG0445" /db_xref="CDD:30794" gene 66367..66606 /locus_tag="Alide2_0054" /db_xref="GeneID:10481070" CDS 66367..66606 /locus_tag="Alide2_0054" /inference="similar to AA sequence:KEGG:PC1_0787" /note="KEGG: pct:PC1_0787 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386010.1" /db_xref="GI:330822707" /db_xref="GeneID:10481070" /translation="MSFPLEERRALLACKGVGAAVVARLEQMGYGSLAHLAKANTPDI LAAGARLTGSSCWKNSSQARAAIDAALALARSRHG" gene 66599..67246 /locus_tag="Alide2_0055" /db_xref="GeneID:10481071" CDS 66599..67246 /locus_tag="Alide2_0055" /inference="protein motif:TFAM:TIGR00138" /note="KEGG: dia:Dtpsy_0046 16S rRNA methyltransferase GidB; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G" /codon_start=1 /transl_table=11 /product="methyltransferase GidB" /protein_id="YP_004386011.1" /db_xref="GI:330822708" /db_xref="GO:0008649" /db_xref="InterPro:IPR003682" /db_xref="GeneID:10481071" /translation="MVDAAPLRQGVQALGLDLTEEQIARLLDFLALLQKWNKVYNLTA VRDPQEMLTHHLLDSLAAVAPLRRHLAQQGGAGRRLLDVGSGGGLPGVVFAICCPDLD VSCVDTVAKKAAFIQQAAAALGLRNLHGIHARVETLAGPFDVVSCRAFASLPDFVNWS RQVLAPHAVWLAMKGRHPQDEIAALPVGVQVFHVEQLAVPGLDAERCIVWMRPVA" misc_feature 66668..67240 /locus_tag="Alide2_0055" /note="16S rRNA methyltransferase GidB; Reviewed; Region: gidB; PRK00107" /db_xref="CDD:178868" gene 67283..67897 /locus_tag="Alide2_0056" /db_xref="GeneID:10481072" CDS 67283..67897 /locus_tag="Alide2_0056" /inference="protein motif:PFAM:PF01810" /note="PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dia:Dtpsy_0047 lysine exporter protein (LysE/YggA)" /codon_start=1 /transl_table=11 /product="lysine exporter protein LysE/YggA" /protein_id="YP_004386012.1" /db_xref="GI:330822709" /db_xref="InterPro:IPR001123" /db_xref="GeneID:10481072" /translation="MFGIADYGAFVAAIVLFLAIPGPGNLALITSTGKGGVRAGLAAC LGVIAADQVLMWAAVAGVAGLLAAYPAAFHAVQWLGAVYLGWMGYKMLTARPGDAPVL RIEPRHYFRQGAVITLLNPKAIVFYMAFFPLFVNPATHRGLATFAAMAATIAALTFLY SLVVVLLTHHLAERMRANPMVVRVLEKTAGTFLIGFGIKLAISK" misc_feature 67283..67891 /locus_tag="Alide2_0056" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene 67906..68676 /locus_tag="Alide2_0057" /db_xref="GeneID:10481073" CDS 67906..68676 /locus_tag="Alide2_0057" /inference="protein motif:PFAM:PF01656" /note="PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_0048 cobyrinic acid ac-diamide synthase" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_004386013.1" /db_xref="GI:330822710" /db_xref="InterPro:IPR002586" /db_xref="GeneID:10481073" /translation="MAKIFCIANQKGGVGKTTTSVNLAAGLAKIGQRVLLVDLDPQGN ATMGSGVDKRQLALSVYDVLLESSSIKEAAVPAEQCGYHVLGANRELAGAEVELVALE HRERRLKAALAEVDQDYDFVLIDCPPSLSMLTLNGLCSAHGVIVPMQCEYFALEGLTD LVNTIKQVHANLNRDLQIIGLLRVMFDPRITLQSQVSAQLKDHFGDKVFDTVIPRNVR LAEAPSYGLPGVVFDPVAKGSQAFVDFAREMVQRIQRM" misc_feature 67906..68670 /locus_tag="Alide2_0057" /note="ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192" /db_xref="CDD:31385" misc_feature 67915..>68031 /locus_tag="Alide2_0057" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature 67936..67956 /locus_tag="Alide2_0057" /note="P-loop; other site" /db_xref="CDD:73302" misc_feature 67954..67956 /locus_tag="Alide2_0057" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" misc_feature 68200..68451 /locus_tag="Alide2_0057" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature 68278..68280 /locus_tag="Alide2_0057" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene 68761..69303 /locus_tag="Alide2_0058" /db_xref="GeneID:10481074" CDS 68761..69303 /locus_tag="Alide2_0058" /inference="protein motif:PFAM:PF06821" /note="PFAM: Protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386014.1" /db_xref="GI:330822711" /db_xref="InterPro:IPR010662" /db_xref="GeneID:10481074" /translation="MHPFQVLLLPGWQDSGPGHWQTEWERLHGYRRVQQHDWTRPLRG DWSARLEEVVADAPGEVLLAAHSLGCILAAWWAAHTRHARKVHGALLVAPGDVQRPDL AAQIRGWAPIARRPLPFPAVLAGSRDDPYCAFERARAMAQDWGARFVDLGARGHVNAE SGLGDWPEGHALLQTLINKD" misc_feature 68776..69282 /locus_tag="Alide2_0058" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 69309..70226 /locus_tag="Alide2_0059" /db_xref="GeneID:10481075" CDS 69309..70226 /locus_tag="Alide2_0059" /inference="protein motif:TFAM:TIGR00180" /note="TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein; SMART: ParB-like nuclease" /codon_start=1 /transl_table=11 /product="parB-like partition protein" /protein_id="YP_004386015.1" /db_xref="GI:330822712" /db_xref="GO:0003677" /db_xref="InterPro:IPR003115" /db_xref="InterPro:IPR004437" /db_xref="GeneID:10481075" /translation="MVTKKPKGLGRGLEALLGPKVADKAEQAQAEAQGLPSTLALDQL VPGVYQPRTRMDEGALYELAESIRAQGVMQPILVRRLGNGENVGKYEIIAGERRFRAS RLAGLNEVPVLVRDVPDEAAAAMALIENIQREDLNPLEEAQGLQRLIREFGLTHEQAA QAVGRSRSAASNLLRLLNLAEPVQTMLMAGDIDMGHARALLALDRATQITAGNQIAAR KLSVREAEGLVKKLGAEFNLTPQKPKKDKSRDMKRIEEELSDLLMAEVEVRVKKRVKR GSRTEEMGELAIAFGSLEALNGLIERLRG" misc_feature 69423..69701 /locus_tag="Alide2_0059" /note="ParB-like nuclease domain; Region: ParBc; cl02129" /db_xref="CDD:154762" misc_feature 69441..>70004 /locus_tag="Alide2_0059" /note="PRTRC system ParB family protein; Region: PRTRC_parB; TIGR03734" /db_xref="CDD:163446" gene 70251..71030 /locus_tag="Alide2_0060" /db_xref="GeneID:10481076" CDS 70251..71030 /locus_tag="Alide2_0060" /inference="similar to AA sequence:KEGG:Ajs_0032" /note="KEGG: ajs:Ajs_0032 methyltransferase type 12" /codon_start=1 /transl_table=11 /product="type 12 methyltransferase" /protein_id="YP_004386016.1" /db_xref="GI:330822713" /db_xref="GeneID:10481076" /translation="MRLSWPLPALLAWGVAWLLHAVLQPRLGTLASLLGATGVGVLAS LWGQSWWRRALIALGFPLSLALTGAAGLPAWAWLLPLAVLLLVYPLNAWRDAPLFPTP RGALHGLDALAPLPPGAAVLDAGCGLGDGLLALRAAYPRARLHGLEWSWPLALLCRLR CPWAHVRRGDIWAAGWGDYQLVYVFQRPESMARAAAKALAEMAPGSWLVSLAFEVPGL AACARLPGFAGQGVWIYRMGASAAAPRGATKECGASADVTL" sig_peptide 70251..70316 /locus_tag="Alide2_0060" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.639) with cleavage site probability 0.636 at residue 22" gene 71090..72130 /locus_tag="Alide2_0061" /db_xref="GeneID:10481077" CDS 71090..72130 /locus_tag="Alide2_0061" /inference="protein motif:PFAM:PF01471" /note="PFAM: Peptidoglycan binding-like; KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein" /codon_start=1 /transl_table=11 /product="peptidoglycan-binding domain 1 protein" /protein_id="YP_004386017.1" /db_xref="GI:330822714" /db_xref="InterPro:IPR002477" /db_xref="GeneID:10481077" /translation="MSRKTLSLLAAACAVVALAGCETTNMKMGSQDAKTVATGAAAGG SAANESSQLERCQSPLGTVSLVENQDAGWYTILRNEYKLPPTANLLRLLIQQSNCFVV VERGAAGMRAMDRERQLMGSGEMRGGSNFGKGQMVASDYGLSPEIIFSNNDAGGVGGA LGGLIGGGRGRALAAIGGSLKTREASAMLTLVDNRSGVQVAASEGSASKSDFAGFGGI FGGSAGGGLGGYQNTAQGKVITAAFMDAYNQMVVALRNYKAQSVQGQGLGGGGKLGVD GGAAPSQTKAGAAMSVREAQERLNALGYNVGTPDGSAGPKTARALREFQQQQGLPVTG RLDAATAGALSR" sig_peptide 71090..71149 /locus_tag="Alide2_0061" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.744 at residue 20" misc_feature 71963..72121 /locus_tag="Alide2_0061" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene complement(72210..73115) /locus_tag="Alide2_0062" /db_xref="GeneID:10481078" CDS complement(72210..73115) /locus_tag="Alide2_0062" /inference="protein motif:PFAM:PF02311" /note="KEGG: dia:Dtpsy_0054 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain" /codon_start=1 /transl_table=11 /product="AraC protein arabinose-binding/dimerization" /protein_id="YP_004386018.1" /db_xref="GI:330822715" /db_xref="InterPro:IPR003313" /db_xref="InterPro:IPR018060" /db_xref="GeneID:10481078" /translation="MPIHAAPPPGHADAQAAPAHAPRAARVLSYVESLTPHLFVPSRA RPVRAKHRELRADTQVRPHSHPWAQVAISTTGVLRLTVPDGAYIVPPSRALWIPPGVE HAVTMVEDADLRTLYFHQPPGRCGPGVARAQEEPWRQCRVLEVSDLLRALVREMPSEP DDAPPLPPELLHRERHLSALILDELRRASSVRLGVDLPRDKRLRHLCEAVIADPTRHE TLADWARDTGASPRTVARLFRQELSSTFTQWRQQVILARAVALAAGRRPINQIAAELG YNSPSAFSAMVRRTVGLAPGRFLGA" misc_feature complement(72648..72959) /locus_tag="Alide2_0062" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" misc_feature complement(72222..72572) /locus_tag="Alide2_0062" /note="AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:32389" gene 73175..74440 /locus_tag="Alide2_0063" /db_xref="GeneID:10481079" CDS 73175..74440 /locus_tag="Alide2_0063" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0055 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004386019.1" /db_xref="GI:330822716" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10481079" /translation="MPMTTAATPSLRQDVRTIGLIGLAHGSSHFFHMLLPPLFPFLIK DFGYSYSELGLLLSVFFVVSGTGQALSGFLVDKVGARPVLFAALSSFAAAGLVAGSAG GYAGLVLAAVLAGLGNAPFHPVDFTILNKRVSPQRLGHGFSVHGISGNLGWATAPVFM AGIATATGSWRMACLGGAALALLVLAIMVWNRDALDDRQGAWAHQAAKGAVGAAAVQE HPMAFLRLPAVWLCFSFFFWSTCSLSAIQSFAAPSLQRMYDMPLSLTTMVVTGYMLCG AMGMVLGGFLVGRVERLEKTISVCLLASATLLTLVGLGVLPGMVALAVASLAGMGIGI AGPSRDMLIKRAAPPGATGRVYGTVYSGLDLGFSLAAPVFGAMLDAQMNAGIFYGSAL ALVLSVVSAGFVGVGVAARRMQAVAQSAA" misc_feature <73835..74338 /locus_tag="Alide2_0063" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(74442..75251) /locus_tag="Alide2_0064" /db_xref="GeneID:10481080" CDS complement(74442..75251) /locus_tag="Alide2_0064" /inference="protein motif:PFAM:PF00924" /note="PFAM: Mechanosensitive ion channel MscS; KEGG: bpy:Bphyt_0752 MscS mechanosensitive ion channel" /codon_start=1 /transl_table=11 /product="MscS Mechanosensitive ion channel" /protein_id="YP_004386020.1" /db_xref="GI:330822717" /db_xref="InterPro:IPR006685" /db_xref="GeneID:10481080" /translation="MNTTDIWHFLSTQGTDFAIKLATAIAAWIIGRWLISLAVSLMGK LLQRGGKIDTTLAHYLKSITGVLLNIILILAILDIFGVKTTSFAALLAGAGLAIGAAW SGMLGNFAAGVFMQVLRPYKVGDFISAGGMVGTVTELGLFATTLTTPDNVMTVVGNGK IFGDNIQNFSALPVRRVDCVAKVANSVSPLDAIARLKPVISAIPNVATEPAPDIEILE FTPEGPKLCVRPYTHTDHYWQVYFDTNKAIVETFGAAGYPVPETPMAYRNA" misc_feature complement(74472..>74936) /locus_tag="Alide2_0064" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" gene 75330..75425 /locus_tag="Alide2_0065" /db_xref="GeneID:10481081" CDS 75330..75425 /locus_tag="Alide2_0065" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386021.1" /db_xref="GI:330822718" /db_xref="GeneID:10481081" /translation="MAVPMSGPAATRRTVLQEKASNALCMGAISY" gene complement(75450..76874) /locus_tag="Alide2_0066" /db_xref="GeneID:10481082" CDS complement(75450..76874) /locus_tag="Alide2_0066" /EC_number="1.1.2.4" /inference="protein motif:PRIAM:1.1.2.4" /note="KEGG: ajs:Ajs_0040 fis family transcriptional regulator; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal" /codon_start=1 /transl_table=11 /product="D-lactate dehydrogenase (cytochrome)" /protein_id="YP_004386022.1" /db_xref="GI:330822719" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="GeneID:10481082" /translation="MNAPAHAAQLQPRIDPRPVPQALLDALSQRFGAQLSTAQAVREQ HGRDEGSIQAPPPAAVVFAESTQDVQDAMRLAAQHEVPVIAYGAGSSLEGHLLAVQGG ISIDVGRMNKVLSIDADDLTVTVQPGITRKALNEAIKDTGLFFPIDPGADASIGGMAA TRASGTNAVRYGTMRENVLALEVVTANGDVIRTGTRAKKSSAGYDLTRLMVGSEGTLG IFTEVTVRLYPLPEAVSAAICSFPSIEAAVRTVIQTIQLGVPIARVELIDANSVRMVN AHSRLALREEPMLLMEFHGSAASVQEQAETVQGIASEFGGQAFEWASTPEERTRLWTA RHNAYFAAVQSRPGCKAISTDTCVPISRLADCLLASVDEADASGIPYFLVGHVGDGNF HFGYLINPAVPEERERAEQLNHRLVARALSMGGTCTGEHGVGVHKMGFLVDETGAGAV DMMRAIKRALDPKNILNPGKIFAL" misc_feature complement(75462..76820) /locus_tag="Alide2_0066" /note="D-lactate dehydrogenase [cytochrome]; Region: PLN02805" /db_xref="CDD:178402" misc_feature complement(76293..76706) /locus_tag="Alide2_0066" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene complement(76968..77204) /locus_tag="Alide2_0067" /db_xref="GeneID:10481083" CDS complement(76968..77204) /locus_tag="Alide2_0067" /inference="similar to AA sequence:KEGG:Dtpsy_0062" /note="KEGG: dia:Dtpsy_0062 calcium-binding EF-hand-containing protein" /codon_start=1 /transl_table=11 /product="calcium-binding EF-hand-containing protein" /protein_id="YP_004386023.1" /db_xref="GI:330822720" /db_xref="GeneID:10481083" /translation="MPQTQQRRPLSSFDARSVMLFAALTVGGALAQAQTSSPSPAAQA RYQAGPSRTPPEPNAAPGGSARPAAARHAAGTRS" sig_peptide complement(77103..77204) /locus_tag="Alide2_0067" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.519 at residue 34" gene 77362..77937 /locus_tag="Alide2_0068" /db_xref="GeneID:10481084" CDS 77362..77937 /locus_tag="Alide2_0068" /EC_number="2.5.1.17" /inference="protein motif:TFAM:TIGR00636" /note="TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: dia:Dtpsy_0063 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type" /codon_start=1 /transl_table=11 /product="ATP/cobalamin adenosyltransferase" /protein_id="YP_004386024.1" /db_xref="GI:330822721" /db_xref="GO:0005524" /db_xref="GO:0008817" /db_xref="InterPro:IPR002779" /db_xref="InterPro:IPR017858" /db_xref="GeneID:10481084" /translation="MGNRLTQIATRTGDDGTTGLGDNTRVSKASGRPHAMGDVDELNS HIGLLLCEPMPQDVRELLIDVQHQLFNLGGELCMPGYELLKDDALLQLDNALARYNAE LPRLQEFILPAGTRAACQAHVCRTVARRAERAVVALQQAETMRAAPRQYLNRLSDLLF VLSRVLNRMDGGNEVYWKSERLARQADDATE" misc_feature 77428..77862 /locus_tag="Alide2_0068" /note="Cobalamin adenosyltransferase; Region: Cob_adeno_trans; cl00920" /db_xref="CDD:193973" gene complement(77998..78420) /locus_tag="Alide2_0069" /db_xref="GeneID:10481085" CDS complement(77998..78420) /locus_tag="Alide2_0069" /inference="protein motif:TFAM:TIGR00369" /note="KEGG: ajs:Ajs_0044 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily" /codon_start=1 /transl_table=11 /product="phenylacetic acid degradation-like protein" /protein_id="YP_004386025.1" /db_xref="GI:330822722" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10481085" /translation="MSIWKTPISLASVNAHTAHTAISHLGIEFLEVGDDFLRARVPVD ERTRQPYGILHGGVSVVLAETLGSMGAANACPPDHRVVGLDINANHIRATSSGWVTGT ARPVHIGKSTQVWQIDMVNDEGQLTCVSRITMAVLQPR" sig_peptide complement(78358..78420) /locus_tag="Alide2_0069" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.668) with cleavage site probability 0.597 at residue 21" misc_feature complement(78013..78351) /locus_tag="Alide2_0069" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature complement(order(78142..78153,78172..78174,78259..78261)) /locus_tag="Alide2_0069" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(78151..78153,78157..78171,78241..78243, 78250..78252,78256..78258)) /locus_tag="Alide2_0069" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(78172..78174,78214..78219,78226..78231, 78253..78255)) /locus_tag="Alide2_0069" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(78503..79969) /locus_tag="Alide2_0070" /db_xref="GeneID:10481086" CDS complement(78503..79969) /locus_tag="Alide2_0070" /EC_number="3.1.2.1" /inference="protein motif:TFAM:TIGR03458" /note="TIGRFAM: Succinate CoA transferase; KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; PFAM: Acetyl-CoA hydrolase/transferase" /codon_start=1 /transl_table=11 /product="succinate CoA transferase" /protein_id="YP_004386026.1" /db_xref="GI:330822723" /db_xref="InterPro:IPR003702" /db_xref="InterPro:IPR017821" /db_xref="GeneID:10481086" /translation="MSAAEAAALIPAGANVGMSGFTGSGHPKLVPQALATRIEAEHAA GRPFQVNVWTGASTAPELDGALARVGGMRQRLPFQSDPVCRDRINAGEVDYLDIHLSH VAQQAWFGFLGPLHVAVIEVLGILPDGRLIPSAAVGNNKTWLDIADKVILEVNSLPPA EMEGMHDIYYGTAIPPRRLPINLTQPIERIGEPYLRVDPAKVIAVVPTHHGDRDTAFA QPDAVSNQIAAHIIDFLAHEVKVGRLPRNMLPLQSGVGNVANAVLAGLLDGPFDDLLG FTEVLQDGMLELIKRGKMAAASATAISLSRPALQEFTDNIAFYRERIVLRPQEISNHP ELVRRLGVIAMNAMIEADIYGNINSTHLMGSGMMNGIGGSGDFARNGYLSFFVTPSVA KGGAVSCIVPMVSHVDHTEHDTQIIVTEQGLADLRGLSPRQRAQVIIDKCAHPDWRPL LQDYFDRARSQGAQHTPHLLGEALSWHQRCLETGSMRA" misc_feature complement(78515..79969) /locus_tag="Alide2_0070" /note="succinate CoA transferases; Region: YgfH_subfam; TIGR03458" /db_xref="CDD:163273" misc_feature complement(79349..79924) /locus_tag="Alide2_0070" /note="Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550" /db_xref="CDD:111448" gene 80181..80903 /locus_tag="Alide2_0071" /db_xref="GeneID:10481087" CDS 80181..80903 /locus_tag="Alide2_0071" /inference="similar to AA sequence:KEGG:Dtpsy_0067" /note="KEGG: dia:Dtpsy_0067 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386027.1" /db_xref="GI:330822724" /db_xref="GeneID:10481087" /translation="MPFTPLCPSCRQPADVRRFAATGGGTLELDLCFACQGMWFDPQE NTRLAPAAVLQLFELLHDRRGDAHRPLSDRLQCPRCATALVKGYDVAQGGRYVTYRCA ARHGRFSTFGAFMVEKGFVRHLSKLEIEALARRVGTITCTSCGGAVDIRNDHACPYCR SALSLLDPQAVDKALARHGRAAQQSAEQADERSPDALIALERNRSREERERQRERLEG RQSDQFDLVAAGIEFVWSLLRR" gene 80958..81872 /locus_tag="Alide2_0072" /db_xref="GeneID:10481088" CDS 80958..81872 /locus_tag="Alide2_0072" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rme:Rmet_5369 putative LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386028.1" /db_xref="GI:330822725" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481088" /translation="MDLISLEVLVAAIEEKSLSAAAERMHMVTSAASKRIAELERREA TVLLRRHGRGVVPTPAGAMLYQRAKSILRQIAQARGALREYAASGVPHVPHVRLAANA SAIQQFLPSEIGAFSRREPAVRVDLTEAFSYDVPRLVADGDADVGIYHAAYPAPGVLS RPYRRDRVALVVPAGHPLEARGQLPLEDALEYDFLGYFPRHSLSEFLALAGNTLTRPI RVRAQVSNPGARCAMVREGLGLAIVPLGIARNYARLLGLSILTLTDEWATRQLWVCAR QPAQLPPEAALLWHFFLEHSGEADSASS" misc_feature 80958..81851 /locus_tag="Alide2_0072" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 80973..81140 /locus_tag="Alide2_0072" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 81240..81821 /locus_tag="Alide2_0072" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(81285..81290,81294..81299,81306..81308,81318..81320, 81324..81344,81618..81635,81651..81656,81660..81665) /locus_tag="Alide2_0072" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 81997..83007 /locus_tag="Alide2_0073" /db_xref="GeneID:10481089" CDS 81997..83007 /locus_tag="Alide2_0073" /inference="similar to AA sequence:KEGG:Reut_B4598" /note="KEGG: reu:Reut_B4598 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386029.1" /db_xref="GI:330822726" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481089" /translation="MFGRANRRKFFQSTTAGAISAAAFGSALTPHWAWAQSPDGYPSR AIRVVVPFTPGGGTDVVGRALMEALSRELGQAIIVDNKPGGGTVIGSDLVAKAPADGY TLLLTTSALAINDSLVPKLPYKTARDITEVGLICTGPNVFVVRPESPYRSVADLIQAA KARPGRLTYGSSGNGSSVHLAAELFKLMAQVDITHVPYRGAGPAYTDLMGGQIDFVVG TAGGVAKLVEAGKMRAIAVTSEKRTSAYKDIPTVAETLPGYAADVWYGIFAPAGTPPD VIAKLNAALAKAANAPAYKQRLSNEGLTVAVNSPAEMTRFMRAEEARWRKVVVEGKVS VD" sig_peptide 81997..82104 /locus_tag="Alide2_0073" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.975 at residue 36" misc_feature 82105..82980 /locus_tag="Alide2_0073" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 82177..82986 /locus_tag="Alide2_0073" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 83056..83862 /locus_tag="Alide2_0074" /db_xref="GeneID:10481090" CDS 83056..83862 /locus_tag="Alide2_0074" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="KEGG: bbr:BB2766 putative short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004386030.1" /db_xref="GI:330822727" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481090" /translation="MTTTSQRLAGKVAIIVGAGQQPGETVGNGRAVAERFAEEGARLL LVDIQPESLKDTEDKLRSMGAEVASVLADITREDDCARIAAQCVATFGRIDVLHNNVG RSKGDKSTVELGADMWDEIMAMNLKGMFMTCKHVLPQMIAQKEGSIINISSTSSLSAR PTVAYKTSKGAVNTFTQHLAYENAAHGVRANAILPGLIDTPMAIERRARERGVSREIV RAEREAMVPMKRMGTAWDVAHAAVFLASDESRYVTGVLLPVDGGLVCKRG" misc_feature 83071..83847 /locus_tag="Alide2_0074" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 83092..83835 /locus_tag="Alide2_0074" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature order(83104..83106,83110..83115,83134..83139,83194..83202, 83269..83277,83353..83361,83425..83427,83506..83514, 83548..83550,83560..83562,83638..83649,83653..83658) /locus_tag="Alide2_0074" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature order(83428..83430,83512..83514,83548..83550,83560..83562) /locus_tag="Alide2_0074" /note="active site" /db_xref="CDD:187544" gene 83864..84625 /locus_tag="Alide2_0075" /db_xref="GeneID:10481091" CDS 83864..84625 /locus_tag="Alide2_0075" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="KEGG: vap:Vapar_0736 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004386031.1" /db_xref="GI:330822728" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481091" /translation="MNLRLQGSHVLVTGASRGIGKACVRAFLDEGATVSALARTQQTL EAMAAQMQAGDRLRVFCADLQDAAQAQEAVRRIEAQGGPIQVLVNCAGAAKRTPFAQL QPADWHAGMQAKFYSYMHVLTPVVQRMAGRGAGAVVNVVGAGGKRANPVHLAGGAANA ALMLAGTGLAAAYAPSGVRINTINPGQVRTERLQAQRDAQAAAGGAPLAEPPLGRPAE PEEIAALAVFLASPRASYVSGAVIAMDGVALPTVV" misc_feature 83873..84601 /locus_tag="Alide2_0075" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 83891..84601 /locus_tag="Alide2_0075" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(83903..83905,83909..83914,83918..83920,83975..83983, 84131..84139,84281..84289,84326..84328,84338..84340, 84416..84427) /locus_tag="Alide2_0075" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(84203..84205,84287..84289,84326..84328,84338..84340) /locus_tag="Alide2_0075" /note="active site" /db_xref="CDD:187535" gene 84657..85172 /locus_tag="Alide2_0076" /db_xref="GeneID:10481092" CDS 84657..85172 /locus_tag="Alide2_0076" /inference="protein motif:PFAM:PF02627" /note="PFAM: Carboxymuconolactone decarboxylase; KEGG: axy:AXYL_01971 carboxymuconolactone decarboxylase family protein 2" /codon_start=1 /transl_table=11 /product="carboxymuconolactone decarboxylase" /protein_id="YP_004386032.1" /db_xref="GI:330822729" /db_xref="InterPro:IPR003779" /db_xref="GeneID:10481092" /translation="MRIAPITPGTRPELAELEATITRQRGRVSPLYQVLLNSPAMAHG WEQMLTAVRRHNSLPDLDRELLIVRVAVLNHARFEYEAHVPIALQAGASSQMIADVSG ADAIGASVQGGLRALVELADAMTSRIDVPDALYAQAAAYYTQQQMVDAMVTIGAYNMV SRFLEAVQIGH" misc_feature 84690..85163 /locus_tag="Alide2_0076" /note="Uncharacterized conserved protein [Function unknown]; Region: COG2128" /db_xref="CDD:32311" misc_feature 84771..85007 /locus_tag="Alide2_0076" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene complement(85179..86465) /locus_tag="Alide2_0077" /db_xref="GeneID:10481093" CDS complement(85179..86465) /locus_tag="Alide2_0077" /inference="protein motif:TFAM:TIGR00801" /note="KEGG: ajs:Ajs_0048 uracil-xanthine permease; TIGRFAM: Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease" /codon_start=1 /transl_table=11 /product="uracil-xanthine permease" /protein_id="YP_004386033.1" /db_xref="GI:330822730" /db_xref="GO:0005215" /db_xref="InterPro:IPR006042" /db_xref="InterPro:IPR006043" /db_xref="GeneID:10481093" /translation="MGMFQWNERPAEVLQGGGVIGPDERLPWGQTGLMGIQHVIAMFG STVLAPILMGFDPNLAVFMSGIGTLIFFLVTGGKVPSYLGSSFAFIGVVIAATAYAGK GANANIGVALGGIIACGAVYAAVGVVVHLVGTGWIERFMPPVVTGAVVAVIGLNLAAI PIKNMAASNFDSWMQALTFVCVALVAVFTRGMVQRLLILVGLILASIAYALFTNGMGL GKPVDLSGVMAAPWFGVPQFHAPVFSAPAMLLIVPVVIILVAENLGHIKAVTAMTGKN LDQYMGRAFIGDGVATMVSGVAGGTGVTTYAENIGVMAATRIYSTAVFLVAALIAVLL GFSPKFGALIQAIPLPVMGGVSIVVFGLIAIAGAKIWVDNRVDFSQNKNLIVAAITLI LGTGEFTLKFGDFALGGIGTATFGAIVLYALLNRGR" misc_feature complement(85188..86417) /locus_tag="Alide2_0077" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" misc_feature complement(85266..86381) /locus_tag="Alide2_0077" /note="Permease family; Region: Xan_ur_permease; pfam00860" /db_xref="CDD:189745" gene 86617..87327 /locus_tag="Alide2_0078" /db_xref="GeneID:10481094" CDS 86617..87327 /locus_tag="Alide2_0078" /inference="protein motif:TFAM:TIGR01444" /note="TIGRFAM: Methyltransferase FkbM; KEGG: sna:Snas_6312 methyltransferase FkbM family" /codon_start=1 /transl_table=11 /product="methyltransferase FkbM family" /protein_id="YP_004386034.1" /db_xref="GI:330822731" /db_xref="InterPro:IPR006342" /db_xref="GeneID:10481094" /translation="MKALIKALAHRAGLDVMSLAYSRDYIYDRFLPGALKGHGIQAVI DIGANIGGYGELLRRVGFAGDIHSFEPCSQPFGELARKAAGDPRWHVYQKAASDRSGT AQIHTMVGSELNSFLSLRESSRKMTETGTEDVETVTLDGLDLPIDWSRTFVKIDTQGH DVKVMSGGRNVLRQAALIQSEVSFLPIYQGMPAFDEAIASLKELGFDVIGMFPVSRDS LGRVQEFDCLCVNRNLPR" misc_feature 86743..87165 /locus_tag="Alide2_0078" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(87454..88722) /locus_tag="Alide2_0079" /db_xref="GeneID:10481095" CDS complement(87454..88722) /locus_tag="Alide2_0079" /inference="protein motif:TFAM:TIGR01988" /note="KEGG: ajs:Ajs_0052 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding" /codon_start=1 /transl_table=11 /product="Ubiquinone biosynthesis hydroxylase" /protein_id="YP_004386035.1" /db_xref="GI:330822732" /db_xref="GO:0005215" /db_xref="GO:0050660" /db_xref="InterPro:IPR002938" /db_xref="InterPro:IPR010971" /db_xref="GeneID:10481095" /translation="MPPQQTNTHSSSDVLIVGAGPAGLSLAASLAQAGMQVTVLEQQP ASVLAAPPPDGREIALTHPSVATLQRLGSWQRLAAHEVGLLREAQVHDGPVGRRGAMQ LHAGGSGVDHLGWIVPNYALRRTAYEVAAQQPDVRIVTEARVARVAVTPAHAELEYTD ARQGGQGAERLQAPLLVAADSRFSATRRQLGIGAAMHDFGRTVIVCRLRHELPHHEVA HECFGYEQTLAILPLPNDPIDGAPMCSAVVTTGAAQAQQLMALPPEEYAARVQAQFQN RLGAMRLVGERHAYPLVAVYAHRFAGPRCALLGDAAVGMHPVTAHGYNLGLAGVEGLT RAVAGAWARGADIGAASVLAPYAREHHRHAWPLYQGTNAIVRLYTDDRPLPRLLRQAV LAGSNRLPPLKGLIVSQLTGRRPAWPTAAP" misc_feature complement(87496..88704) /locus_tag="Alide2_0079" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(87478..88692) /locus_tag="Alide2_0079" /note="hypothetical protein; Provisional; Region: PRK09126" /db_xref="CDD:181663" gene 88892..90967 /locus_tag="Alide2_0080" /db_xref="GeneID:10481096" CDS 88892..90967 /locus_tag="Alide2_0080" /EC_number="6.2.1.16" /inference="protein motif:TFAM:TIGR01217" /note="TIGRFAM: Acetoacetyl-CoA synthase; KEGG: dia:Dtpsy_0074 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="acetoacetyl-CoA synthase" /protein_id="YP_004386036.1" /db_xref="GI:330822733" /db_xref="GO:0030729" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR005914" /db_xref="GeneID:10481096" /translation="METDSPPPYVPQIRLYQDWLQARRGLRFDGYDALWRWSVTELDA FWQSVWDYFDLQSPTPHDAVLARNVMPGARWFPGAQVNYARQVLRHVDAAHAAGQPAL VARNERGQHRELSWPALRRQVAALALHLKAQGVGPGDRVAAYLPNIPETIVAFLACAS IGAVWSVCAPDMGTNAVLDRFRQIEPKVLFAVDGVSYGGRDHDRCAVLAELRAQLPTL RHVVLVNNLDATKTIADTACYASITARKDAETAAFEPLWLPFDHPLWIVYSSGTTGMP KPIVHGHGGMLLVMLQLAVLHNDIGCSYAPNSFGERFHWYSSTGWIMWNAQVGGLLGG TTCVLYDGNPGGSKERPDWGVLWRMAAETGVTFFGAGAAFYGNCMKAGITPAQCGDLS AIRALGSTGSPLPAEVQQWGSDFMAVAGVPRVWWANISGGTDFAGAFLGGHRELPQTP GRMQCRMLGAAVEAWDEQGRPVLDAVGELVCTQPIPSMPLYLWGDADGARYRASYFDM YPPGHGRRPGGGDLGPEAGAVWRHGDWIEIGSAAHPGCLIYGRSDATINRHGLRMGTS EIYSAVEALPEVLDSLVVDLEYLGRESWMPLFVVLREGVALDDALRGRIDDAIRAALS PRFVPDDIFAVAEVPRTLSGKKQELPIKKLLLGQPLAKVVNRDAMANPGCLDWYVDFA ARRGAAAAA" misc_feature 88901..90934 /locus_tag="Alide2_0080" /note="acetoacetyl-CoA synthetase; Provisional; Region: PRK03584" /db_xref="CDD:179600" misc_feature 88973..89197 /locus_tag="Alide2_0080" /note="Domain of unknown function (DUF3448); Region: DUF3448; pfam11930" /db_xref="CDD:192884" misc_feature 89324..90826 /locus_tag="Alide2_0080" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(90999..91928) /locus_tag="Alide2_0081" /db_xref="GeneID:10481097" CDS complement(90999..91928) /locus_tag="Alide2_0081" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0055 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386037.1" /db_xref="GI:330822734" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481097" /translation="MNLRQLSQFVTLAETGNFHRAAERLHMAQPPLSVSIRKLEEELG SALFARTRTGVALTPAGQAMLDDARRTLLHAQQCRQAVLDTREGTGGRLRLGIIGSAT YALLPRLIPSLRARYPQITLELSEATSSEILEGLVSRRFDAGLLRFPLLDASGFDLTP LDRDDFVLAVAETSPLARREAIALHEAAHEPFIMYPRSKVPGLLALAMMRCQFSGFAP QVAQEAAQVQTIMSLVASGLGVGLVAGVARQVVPRGVKCLRLTDNPPGFHVSIALARL AGNTSRVVQRFAEHALECAGAPHVEGGGGGGPG" misc_feature complement(91743..91922) /locus_tag="Alide2_0081" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(91056..91631) /locus_tag="Alide2_0081" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature complement(order(91167..91169,91221..91226,91230..91235, 91251..91256,91311..91316,91416..91418,91551..91553, 91557..91559,91563..91565,91587..91589,91596..91601, 91605..91610,91617..91619)) /locus_tag="Alide2_0081" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature complement(order(91320..91322,91341..91346,91488..91490)) /locus_tag="Alide2_0081" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene 92044..93030 /locus_tag="Alide2_0082" /db_xref="GeneID:10481098" CDS 92044..93030 /locus_tag="Alide2_0082" /inference="similar to AA sequence:KEGG:Ajs_0056" /note="KEGG: ajs:Ajs_0056 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386038.1" /db_xref="GI:330822735" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481098" /translation="MSLHRRTALRALLGSGLAALGAATAPAARAQAFPSRTIKFVVPF GPGSGTDTSARYFAKKLQDLTGQAVVVENKPGANGFLAVKQVLAAPADGYTVFIGSNS TLAVNAALFKELPYDPVKDFSPLTMMMRSPAMLVVPPAAPYGDLKGLLAHARANPGKV NFGAGSAGYQLMGELLNDMAGVQTVHVPFKSAGETMTAVASGTVDYAFAEVTAVLELA RGGRLKILAVAADKRVGNAPEVPTMGEAGLSGFEAYTWVGAMVPARTPAAETARLAEL FTAISKMDETRAFYERLGAAPMTGGPAQMHDFQRKEIALWKRIVTQAKVPLQ" sig_peptide 92044..92136 /locus_tag="Alide2_0082" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.943 at residue 31" misc_feature 92152..93018 /locus_tag="Alide2_0082" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 92203..93003 /locus_tag="Alide2_0082" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 93056..94213 /locus_tag="Alide2_0083" /db_xref="GeneID:10481099" CDS 93056..94213 /locus_tag="Alide2_0083" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004386039.1" /db_xref="GI:330822736" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481099" /translation="MSTLDSLALTRIPPEDEALRAEVRAFLAEAIKTLPAHVRARSWG GYSTELSRKLGERGWIGVTLPREYGGGGRSAFTRYVLVEEYLNCGAPVGSHWIADRQS APLILKYGTEAQKRFYIPRVCRGEAFFCIGMSEPNSGSDLASVKTRAVPNDKGFLLNG QKIWTTNAHHCQYMIALVRTSGAPEDRHKGLSQVIVDLQLPGVTVRPIEDLSGDSHFC EVFFDNVQLAPDALIGAEGQGWEQVTAELAFERSGPERLFSSIVLFDQWLDWVRTPRG RTEPAQRLAGKVLTQLAPLRAMSVAIQEKLVRGESPIVEAALVKELGTTLEQFIPAAI ADDLFAREAEDVPVELLMTLKYVTEASPSFSLRGGTRDILRGMIARGLGLR" misc_feature 93089..94210 /locus_tag="Alide2_0083" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 93095..94204 /locus_tag="Alide2_0083" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(93356..93358,93446..93448,93452..93454,93545..93547, 93551..93553,94151..94159,94163..94165,94169..94171) /locus_tag="Alide2_0083" /note="active site" /db_xref="CDD:173838" gene 94233..95258 /locus_tag="Alide2_0084" /db_xref="GeneID:10481100" CDS 94233..95258 /locus_tag="Alide2_0084" /inference="protein motif:PFAM:PF00441" /note="PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: ajs:Ajs_0062 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004386040.1" /db_xref="GI:330822737" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="GeneID:10481100" /translation="MDNDLFADAARQVLADQCTPAVVRAIEAGGRAAPEAAALWAQLE ATGLADALLPESQGGAGLALSQVFGVLEQCGAHALPLPLGETMVARALLAAAGVDRPA GGIALARGERTPEGGLRCALVRGGRVAHAVLAQAGDAWHLLGVAGAQEAPQALALDAA LAWTPAQLQAAPAVAVDAALDLRTLQAAVLAPQMAGAAMHVFQRTLQYANERQQFGRP IGKFQAIQHQLAVMSEHVFAARMAAQLGCSGAGVRPDRLRVATAKARCSEAALAVAEL AHAIHGAIGFTAEYDLQLFTRRLHAWRQAAGSESYWHDVAGQALLEHQGLTLDVVRRI TDVESVL" misc_feature <94794..95156 /locus_tag="Alide2_0084" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" gene 95364..96152 /locus_tag="Alide2_0085" /db_xref="GeneID:10481101" CDS 95364..96152 /locus_tag="Alide2_0085" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: ajs:Ajs_0063 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004386041.1" /db_xref="GI:330822738" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10481101" /translation="MAFLTLERDGAILTVTMNQPETRNALTGNTAVQEFVQLCDDVRK DAGVKVIILTGAGPIFSSGGNVKDMKRFFDDALTPDLIREEYRQGIQRIPQALYNLDV PVICAVNGPAIGAGLDLTCMCDIRIAAETATFAESFVRVGIVPGDGGAWLLPRAVGMA KAAEMAFTGEAINAQEALACGLVSRVVPAGELLPTARALAGRIAANPGAVMRMTKRLL REGQLATLDSLLELSAGCQAIAHKTADHREAVTAFIEKRAPRFQ" misc_feature 95364..96149 /locus_tag="Alide2_0085" /note="enoyl-CoA hydratase; Provisional; Region: PRK09245" /db_xref="CDD:181723" misc_feature 95373..95972 /locus_tag="Alide2_0085" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(95430..95432,95436..95438,95535..95537,95547..95561, 95694..95696,95700..95708,95772..95777,95784..95786) /locus_tag="Alide2_0085" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(95553..95555,95706..95708) /locus_tag="Alide2_0085" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(95646..95648,95670..95672,95733..95744,95778..95789, 95805..95807,95811..95819,95823..95828,95841..95846, 95850..95855,95859..95864,95871..95873,95904..95906, 95913..95915,95958..95960,95967..95972) /locus_tag="Alide2_0085" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 96182..96805 /locus_tag="Alide2_0086" /db_xref="GeneID:10481102" CDS 96182..96805 /locus_tag="Alide2_0086" /inference="protein motif:TFAM:TIGR00473" /note="manually curated; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; KEGG: dia:Dtpsy_0083 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol/serine O-phosphatidyltransferase" /protein_id="YP_004386042.1" /db_xref="GI:330822739" /db_xref="GO:0003882" /db_xref="InterPro:IPR000462" /db_xref="InterPro:IPR004533" /db_xref="GeneID:10481102" /translation="MASPHKRFSMIREFHLADWFTLGNAVCGVGALFSSMTYLETADL RHVYFACALVLAALVFDVLDGRIARWRQKSSAMGRELDSLADVISFGVAPAIIAYACG MQGLYDRIVLAFFVACGVSRLARFNITAETLAEGPSGKVKYFEGTPIPTSIVLVGLLA LAASMGAVREHLWLGRMMIGGFTLHPLVLLFALSGSLMISRIRIPKL" misc_feature <96374..96796 /locus_tag="Alide2_0086" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene 97041..98677 /locus_tag="Alide2_0087" /pseudo /db_xref="GeneID:10481103" gene 98704..99254 /locus_tag="Alide2_0088" /pseudo /db_xref="GeneID:10481104" gene 99251..99466 /locus_tag="Alide2_0089" /db_xref="GeneID:10481105" CDS 99251..99466 /locus_tag="Alide2_0089" /inference="similar to AA sequence:KEGG:Rpal_2080" /note="KEGG: rpt:Rpal_2080 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386043.1" /db_xref="GI:330822740" /db_xref="GeneID:10481105" /translation="MMMPSGQRRDARTDEAQSAAEIFRVRILLGLVTAVGLVSALVGD GVWDPLSWLALALATPPAAVAWAWRAR" gene 99634..100413 /locus_tag="Alide2_0090" /db_xref="GeneID:10481106" CDS 99634..100413 /locus_tag="Alide2_0090" /inference="protein motif:HAMAP:MF_00267" /note="TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: dia:Dtpsy_0084 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal" /codon_start=1 /transl_table=11 /product="septum site-determining protein minC" /protein_id="YP_004386044.1" /db_xref="GI:330822741" /db_xref="InterPro:IPR005526" /db_xref="InterPro:IPR007874" /db_xref="InterPro:IPR013033" /db_xref="GeneID:10481106" /translation="MAVDTAGQARTHLDLKSAQLSVVALVLKTADVSAVAAELAARRA DDPEFFDNDPVLIDLSAVQGEEQPIDFAALVQALRSHRTQPVAVRGGSPAQMAAAHAA GLIAAPDVPAARAQPRESGAVREVVREVVREVQVEVPVQVEVPVQAPAPGALVVDKPL RSGQQVYARGSDLVVMAVVSFGAEVIADGNIHVYAPLRGRAIAGARGDTSARIFTTCL EPQLVSVAGIYRTTETELPDNVRGKPAQVRLDGEKLLIEPL" misc_feature 99673..100410 /locus_tag="Alide2_0090" /note="septum formation inhibitor; Reviewed; Region: PRK01973" /db_xref="CDD:179357" misc_feature 99673..99906 /locus_tag="Alide2_0090" /note="Septum formation inhibitor MinC, N-terminal domain; Region: MinC_N; pfam05209" /db_xref="CDD:113960" misc_feature 100093..100410 /locus_tag="Alide2_0090" /note="Septum formation inhibitor MinC, C-terminal domain; Region: MinC_C; pfam03775" /db_xref="CDD:146423" gene 100468..101283 /locus_tag="Alide2_0091" /db_xref="GeneID:10481107" CDS 100468..101283 /locus_tag="Alide2_0091" /inference="protein motif:TFAM:TIGR01968" /note="KEGG: dia:Dtpsy_0085 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="septum site-determining protein MinD" /protein_id="YP_004386045.1" /db_xref="GI:330822742" /db_xref="GO:0016887" /db_xref="InterPro:IPR002586" /db_xref="InterPro:IPR010223" /db_xref="GeneID:10481107" /translation="MAKIVVVTSGKGGVGKTTTSAAFASGLALAGHKTAVIDFDVGLR NLDLIMGCERRVVYDLINVIQGEANLNQALIKDKQCENLFVLAASQTRDKDALTQEGV EKVLKDLADMGFDYIVCDSPAGIESGALMAMHFADEALLVTNPEVSSVRDSDRILGML GSKTKRAIEGKDPIKEHLLITRYNPNRVQDGQMLGLEDIQDILRIKLIGVVPESESVL QASNQGLPAIHLAGTDVSEAYKDVVARFLGEDKPLRFTDAAKPGFFKRIFGGR" misc_feature 100561..101184 /locus_tag="Alide2_0091" /note="Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a...; Region: MinD; cd02036" /db_xref="CDD:73299" misc_feature 100579..100587 /locus_tag="Alide2_0091" /note="Switch I; other site" /db_xref="CDD:73299" misc_feature 100825..100839 /locus_tag="Alide2_0091" /note="Switch II; other site" /db_xref="CDD:73299" gene 101290..101559 /locus_tag="Alide2_0092" /db_xref="GeneID:10481108" CDS 101290..101559 /locus_tag="Alide2_0092" /inference="protein motif:TFAM:TIGR01215" /note="KEGG: dia:Dtpsy_0086 cell division topological specificity factor MinE; TIGRFAM: Septum formation topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE" /codon_start=1 /transl_table=11 /product="cell division topological specificity factor MinE" /protein_id="YP_004386046.1" /db_xref="GI:330822743" /db_xref="InterPro:IPR005527" /db_xref="GeneID:10481108" /translation="MSLLSFLLGEKKKTAAVAKERLQIILAHERSGRNAGKPDYLPAL QRELVAVISKYVKINADDLKVHFERQDDLEVLEVKIELPEAAGGK" misc_feature 101290..101544 /locus_tag="Alide2_0092" /note="Septum formation topological specificity factor MinE; Region: MinE; cl00538" /db_xref="CDD:193859" gene complement(101570..102508) /locus_tag="Alide2_0093" /db_xref="GeneID:10481109" CDS complement(101570..102508) /locus_tag="Alide2_0093" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_1015 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386047.1" /db_xref="GI:330822744" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481109" /translation="MQELGNASSEMAFFHLLVRCGSLSATARELGLTTPAVSRRLALL EQRLGVQLLNRTTRRNSLTPEGEEYLVQARRILADIEDVEHNLRRSMAEPLGLLRVNA TLGFGRSHIAPVISRFCKTYPQVQIQFHLSVTPPPLTDDAFDVCIRFGEPPDARVIAR KVAANRRLLCAAPAYLERHGTPRVPADLARHQCISIHHGQDAYGIWRLSAGRRTESVK VAETMVTNDGDIAVAWALDGHGILMRAEWDIDKYLRSGRLRQVLEQYSTPPADIYAVY PSRHQKARRVTAFVDFLCAELGQATPKARASPRHRR" misc_feature complement(101630..102478) /locus_tag="Alide2_0093" /note="transcriptional regulator; Provisional; Region: PRK10632" /db_xref="CDD:182601" misc_feature complement(102308..102478) /locus_tag="Alide2_0093" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(101630..102223) /locus_tag="Alide2_0093" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479" /db_xref="CDD:176168" misc_feature complement(order(101693..101695,101774..101776, 101825..101827,102014..102016,102020..102022, 102062..102064,102179..102181,102191..102193)) /locus_tag="Alide2_0093" /note="putative effector binding pocket; other site" /db_xref="CDD:176168" misc_feature complement(order(101798..101800,101807..101812, 101831..101845,101933..101935,102116..102136, 102140..102142,102152..102154,102161..102166, 102170..102175,102185..102190)) /locus_tag="Alide2_0093" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176168" gene 102622..103599 /locus_tag="Alide2_0094" /db_xref="GeneID:10481110" CDS 102622..103599 /locus_tag="Alide2_0094" /inference="similar to AA sequence:KEGG:Bpro_4513" /note="KEGG: pol:Bpro_4513 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386048.1" /db_xref="GI:330822745" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481110" /translation="MSHVILRLSRRSTILGLSLLPLAGYAQAYPAKPVSVVIPYSAGG TTDIVARLIAQSLAASTGKTFVAENKGGGSTTIATGAVAKAAPDGYTLLANEMTQTII PWLFPKLSFDPIKDLLPVTVFAEAPYVLVVNSGVPAKNLRELVDLAKAQPGKLNFASG GAGSGPHIAGELLKTVAGVDMTHVPYKGSGPAVADLLGGQVDVLITAAPTVTAQMGSG RMRPLAVAHPRRLSSLPDVPTAAEAGFPDFRIANWFGLAAPKGTPAEVVAYLHAEVQK VLQRADVRDKLLAAGAEPVSMTPAEAARHVNTEARRWGELVRKAQIRLD" sig_peptide 102622..102708 /locus_tag="Alide2_0094" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.964 at residue 29" misc_feature 102640..103590 /locus_tag="Alide2_0094" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 102766..103587 /locus_tag="Alide2_0094" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 103627..104790 /locus_tag="Alide2_0095" /db_xref="GeneID:10481111" CDS 103627..104790 /locus_tag="Alide2_0095" /EC_number="4.2.1.6" /inference="protein motif:PRIAM:4.2.1.6" /note="PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: mes:Meso_4537 galactonate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal" /codon_start=1 /transl_table=11 /product="galactonate dehydratase" /protein_id="YP_004386049.1" /db_xref="GI:330822746" /db_xref="InterPro:IPR013341" /db_xref="InterPro:IPR013342" /db_xref="GeneID:10481111" /translation="MKIRKVEPLHVGQFMFVRITTDDGTVGYGEAGTWGHIEAAGVCI RRFAEYLEGKDAFAIEHHWNVMHRFSYFTGLAENAAISAIDIALWDIKGKALNVPIYE LLGGAARTKARIYGHIYENSIEKMLVECQAKMEAGFNAFGHLNPFLDEGNDQVYFKTH IKKMRDAIDNTRRMREVVGDRVDLLIEIHRRLTPAEAIVFARGIEDTHPMFIEDPIRP EGPDGMARVAEKIGIPIATGERFANLYEFQTLMARGGVEYARVDLCLCGGITGAKKVA ALAEAHHVQVVPHNPLSPIGLAACLQLDAAIPNFAIQEYATGFEAGIFESRPEHLGSD IVDQVPLPDAGFVDIPTGPGLGMNLLPDAQKIRPPLVKPISMRPHFDGFVVDQ" misc_feature 103627..104694 /locus_tag="Alide2_0095" /note="galactonate dehydratase; Provisional; Region: PRK14017" /db_xref="CDD:184455" misc_feature 103648..104697 /locus_tag="Alide2_0095" /note="Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues...; Region: MR_like; cd03316" /db_xref="CDD:48191" misc_feature order(104050..104052,104056..104058,104185..104187, 104263..104265,104341..104343,104410..104412, 104491..104493,104566..104568) /locus_tag="Alide2_0095" /note="active site pocket [active]" /db_xref="CDD:48191" gene complement(104808..105347) /locus_tag="Alide2_0096" /db_xref="GeneID:10481112" CDS complement(104808..105347) /locus_tag="Alide2_0096" /inference="protein motif:PFAM:PF01613" /note="manually curated; PFAM: Flavin reductase-like, FMN-binding; KEGG: ajs:Ajs_0068 flavin reductase domain-containing protein; SMART: Flavin reductase-like, FMN-binding" /codon_start=1 /transl_table=11 /product="flavin reductase domain-containing proten" /protein_id="YP_004386050.1" /db_xref="GI:330822747" /db_xref="InterPro:IPR002563" /db_xref="GeneID:10481112" /translation="MNSTHHPSPPAFSPREFRDALGMFATGVTIVTTRGAGGELVGMT VNSFNSVSLDPPLVLWSLAHKASSLQAFASATHYAINVLTVEQRALAERFATRGIDRW AGVAHHPGLHDMPVIEGVAAVFECTNRSQYAEGDHTIFVGRVERCTHLRGASPLLYHG GMFYTEHALGQLADTVIGP" misc_feature complement(104853..105287) /locus_tag="Alide2_0096" /note="Flavin Reductases; Region: FlaRed; cl00801" /db_xref="CDD:193940" gene 105454..106230 /locus_tag="Alide2_0097" /db_xref="GeneID:10481113" CDS 105454..106230 /locus_tag="Alide2_0097" /inference="protein motif:PFAM:PF00561" /note="PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_0088 alpha/beta hydrolase fold protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004386051.1" /db_xref="GI:330822748" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10481113" /translation="MSLLPGFSLLGSGPTVLLLHDADGDHLSFAPQLETLASAGYRAV AWDMPGYGRSAPVEPYGFKGLAQRCLLLLDALRCGEATLVGHGFGAMLALEIALRAPM RVRRLVLCAGGPALDAAATAAWVAPRLAALEQGMDMARLADLVARDAGADALPEGLQL ARHAMGRVYAATYRRALQALTVFARRAPDLARLHVPTLLIGGEQDRCTPPEALLALAH VLPDARAVLLPGVGHWPQLEDPDGFEGALLEFLAMPARLH" misc_feature 105499..106182 /locus_tag="Alide2_0097" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 106304..106969 /locus_tag="Alide2_0098" /db_xref="GeneID:10481114" CDS 106304..106969 /locus_tag="Alide2_0098" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_0073 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein TetR" /protein_id="YP_004386052.1" /db_xref="GI:330822749" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10481114" /translation="MAFMNTLSQPRPSFKEQMHRAREDAIVEAACRLLGEKGFETMTV DEVACAVGIAKASLYKHFAGKDDLCAAAMVHVVGRLQRFLDELPEGLQALQRLQALLR WLLELQLGDETPLLPSRNSALAQALRTCDAYRASMEEVHARILGWIAEAQAAAQLRRE LPPEVILCALLARSTDPMLAMLRERGHGDAQILDWAVATCLGGLVSAPAAPERCSWPA PGC" misc_feature 106379..106519 /locus_tag="Alide2_0098" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(106917..107339) /locus_tag="Alide2_0099" /db_xref="GeneID:10481115" CDS complement(106917..107339) /locus_tag="Alide2_0099" /inference="protein motif:PFAM:PF00582" /note="PFAM: UspA; KEGG: ajs:Ajs_0074 UspA domain-containing protein" /codon_start=1 /transl_table=11 /product="UspA domain-containing protein" /protein_id="YP_004386053.1" /db_xref="GI:330822750" /db_xref="InterPro:IPR006016" /db_xref="GeneID:10481115" /translation="MNILLAVDGSTYTKKMLAYLAAHDEMLGSSHTYTAITVQPPLPP RARAALGKETVDSYYADEGEKVLSPVVKFMGRHGVQPKTMIKVGPAGETIAKVAESGK YDLVVMGTHGHGSLGKLVMGSVSTQVLANCTVPVLLVR" misc_feature complement(106923..107336) /locus_tag="Alide2_0099" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(106965..106976,107004..107009, 107013..107018,107226..107228,107316..107324)) /locus_tag="Alide2_0099" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(107441..108289) /locus_tag="Alide2_0100" /db_xref="GeneID:10481116" CDS complement(107441..108289) /locus_tag="Alide2_0100" /inference="protein motif:PFAM:PF00149" /note="PFAM: Metallo-dependent phosphatase; KEGG: ajs:Ajs_0075 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004386054.1" /db_xref="GI:330822751" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10481116" /translation="MKLQLLSDLHLEVHPHFSPSPAPGADVLVLAGDIGSYQPGSQLA DGDFGLARFSPLPQYAGWPTPVVFVPGNHEYDGQDFDTAHTRLRRTCDRLGLIWLERE SVVLQGVRLVGTTLWSDFDALAGHGADDASQGQRLKLREKAFRAADFYLRKTGGTRHG EPFLAAQLREQALVCQAWLREALARPFDGATVAVTHFAPSLCSADPRYGMTPGTAGFC NALDDCLPHARLWLHGHLHAPSDYLASGTHADGNSWSCRVVANPLGYARKGEQAAFQS HCVLTV" misc_feature complement(107495..108283) /locus_tag="Alide2_0100" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" misc_feature complement(order(107585..107587,107702..107704, 108071..108076,108191..108193,108260..108262, 108266..108268)) /locus_tag="Alide2_0100" /note="active site" /db_xref="CDD:163614" misc_feature complement(order(107585..107587,107702..107704, 108074..108076,108191..108193,108260..108262, 108266..108268)) /locus_tag="Alide2_0100" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163614" gene complement(108316..109287) /locus_tag="Alide2_0101" /db_xref="GeneID:10481117" CDS complement(108316..109287) /locus_tag="Alide2_0101" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0076 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386055.1" /db_xref="GI:330822752" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481117" /translation="MPSLNFRTLDLNLLRVFDEVMAERNLTRAAEKLAITQPAVSNAL RRLREAVGDELLVRSGHGVEPTPRALALWPAVRQALGQLQESLAPGGFEPASAQATFV LAMADATGATLIPPLIEITEREAPGISLRVIPLTTRDPRRLLDDGTIDMAVGYFPAVL ADLTARAQADNVVAHESVRLYASQYVCVMRAGHPLADAPLSLDQYCAAHHLLVSFSGK PYGFIDEALAALGRERRIVLTVNQFFTAGRVVATTDLLTVLPLHFVGLADVGGDLVWR PLPMPLPTVHVDALWHRRRLYDPAHRWLRETIARAARNTPTPITLRD" misc_feature complement(108370..109269) /locus_tag="Alide2_0101" /note="leucine transcriptional activator; Reviewed; Region: leuO; PRK09508" /db_xref="CDD:181918" misc_feature complement(109081..109257) /locus_tag="Alide2_0101" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(108355..108990) /locus_tag="Alide2_0101" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold; Region: PBP2_Nitroaromatics_like; cd08417" /db_xref="CDD:176109" misc_feature complement(order(108427..108429,108628..108630, 108739..108741,108949..108951,108961..108966, 108970..108972)) /locus_tag="Alide2_0101" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176109" misc_feature complement(order(108532..108534,108541..108546, 108553..108558,108565..108579,108661..108663, 108886..108888,108892..108906,108910..108915, 108922..108927,108931..108936,108943..108948, 108955..108960,108967..108969)) /locus_tag="Alide2_0101" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176109" gene 109413..109853 /locus_tag="Alide2_0102" /db_xref="GeneID:10481118" CDS 109413..109853 /locus_tag="Alide2_0102" /inference="similar to AA sequence:KEGG:Ajs_0077" /note="KEGG: ajs:Ajs_0077 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386056.1" /db_xref="GI:330822753" /db_xref="GeneID:10481118" /translation="MTKFAVIEFPSQHQGVARIEGAVSHLRRSATRFDPTRNGASLLL AALVAALLVVANEMVDTWGDGHLLAGWMLMWLIAFVGMALLAAPARRAVALLRGAAKS WSDARRRAAEDERTWNAALHDARIMADLSRAMNGIAVEDMRRYR" gene complement(109993..111861) /locus_tag="Alide2_0103" /db_xref="GeneID:10481119" CDS complement(109993..111861) /locus_tag="Alide2_0103" /EC_number="4.1.1.32" /inference="protein motif:PRIAM:4.1.1.32" /note="KEGG: dac:Daci_0114 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, GTP-utilising" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxykinase (GTP)" /protein_id="YP_004386057.1" /db_xref="GI:330822754" /db_xref="InterPro:IPR008209" /db_xref="GeneID:10481119" /translation="MNAPSMQGLSLQAPAYVKNARLIAWVAEMAALCKPAAIHWCDGS QEEYDQLCQQLVNAGTFKKLNPAKRPGSYLACSDPSDVARVEDRTFICSEKKEDAGPT NNWMAPNEMRATLQPLFDGCMAGRTMYVVPFSMGPLGSPIAHVGVELSDSAYVAVNMK IMTRMGKAVYDVIGTDGEFVPCMHTVGAPLKAGEKDQTSWPCNPQVKYIVHYPETREI WSYGSGYGGNALLGKKCLALRIASTMGRDQGWLAEHMLILGVTNPEGKKYHVAAAFPS ACGKTNFSMLVPPKAFEGWKVTTIGDDIAWIKPQPDGSLRAINPEAGYFGVAPGTNYH TNPNCMASLNKDVIFTNVALTDDGDVWWEGMEKDTGVVPGHLIDWQGRDWTPQIAKET GAKAAHPNARFTVAATNNPALDEAWDDPKGVKIDAFIFGGRRSTTVPLVTEARTWTEG VYMAATMGSETTAAAFGAQGVVRRDPFAMLPFMGYNMSDYFQHWLDLGAKIAGQGAAL PRIFTTNWFRKNAEGKFVWPGYGENMRVLKWMIDRIESRAQGLETAFGIAPAFAEINW NGLEFSAEQFESVTSIDKSVWAEELKLHTEHFDKLAHHLPQELLATKAALEKRLAA" misc_feature complement(110014..111798) /locus_tag="Alide2_0103" /note="Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and...; Region: PEPCK_GTP; cd00819" /db_xref="CDD:29831" misc_feature complement(109996..111792) /locus_tag="Alide2_0103" /note="Phosphoenolpyruvate carboxykinase; Region: PEPCK; pfam00821" /db_xref="CDD:144423" misc_feature complement(order(110263..110265,110272..110274, 110281..110283,110656..110658,110854..110856, 110881..110883,110887..110889,110953..110958, 111016..111036,111100..111102,111160..111165, 111181..111183,111187..111189,111610..111612)) /locus_tag="Alide2_0103" /note="active site" /db_xref="CDD:29831" misc_feature complement(order(110656..110658,110887..110889, 111160..111165,111181..111183,111187..111189, 111610..111612)) /locus_tag="Alide2_0103" /note="substrate-binding site [chemical binding]; other site" /db_xref="CDD:29831" misc_feature complement(order(110887..110889,110953..110958, 111019..111021,111100..111102,111160..111162)) /locus_tag="Alide2_0103" /note="metal-binding site [ion binding]" /db_xref="CDD:29831" misc_feature complement(order(110263..110265,110272..110274, 110281..110283,110311..110316,110563..110565, 111025..111027,111031..111033)) /locus_tag="Alide2_0103" /note="GTP binding site [chemical binding]; other site" /db_xref="CDD:29831" gene complement(112202..112363) /locus_tag="Alide2_0104" /db_xref="GeneID:10481120" CDS complement(112202..112363) /locus_tag="Alide2_0104" /inference="similar to AA sequence:KEGG:Dtpsy_0098" /note="KEGG: dia:Dtpsy_0098 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386058.1" /db_xref="GI:330822755" /db_xref="GeneID:10481120" /translation="MAHEHHIAPNAADVEAATATDPTETVVNLIPVVLPAAGAAMIFL LALIAVTMA" gene complement(112453..113652) /locus_tag="Alide2_0105" /db_xref="GeneID:10481121" CDS complement(112453..113652) /locus_tag="Alide2_0105" /inference="protein motif:TFAM:TIGR01127" /note="KEGG: dia:Dtpsy_0099 threonine dehydratase; TIGRFAM: Threonine dehydratase II; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Amino acid-binding ACT" /codon_start=1 /transl_table=11 /product="threonine dehydratase" /protein_id="YP_004386059.1" /db_xref="GI:330822756" /db_xref="GO:0004794" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR005789" /db_xref="GeneID:10481121" /translation="MFSIQDIQDAAARLRGQVLDTPCVESRTLSQVTGAQVFLKFENL QFTASFKERGACNKLSQLTPEERKRGVVAMSAGNHAQGVAYHAQRLGLRAVIVMPRFT PGVKVERTRGFGAEVVLHGDTLEEAHRHAHLLAGQQGLTFVHPYDDEAVAAGQGTLAL EMLAEQPDLDVLVVSVGGGGLLAGMATAARALKPSLEIVGVQTARFPAMVNAVKGTQH EQGMSTIAEGIAVGQPGRMTREVIARLVDDLLLVQEGDIEQAVLMLLEIEKTLVEGAG AAGLAALVRYPERFRGKKVGLVLSGGNIDPLLLAAIIERGMVRSGRLARIKVSARDVP GVLARITATVAEAGANIEEVHHQRAFTLLAAQNVEIELVLQTRGKAHVQQVLEQLRAA HMEAELH" misc_feature complement(112456..113652) /locus_tag="Alide2_0105" /note="threonine dehydratase; Provisional; Region: PRK07334" /db_xref="CDD:180936" misc_feature complement(112738..113643) /locus_tag="Alide2_0105" /note="Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562" /db_xref="CDD:107205" misc_feature complement(order(112738..112749,112840..112848, 112858..112860,112867..112872,112879..112881, 113080..113085,113521..113526,113617..113622, 113629..113631,113638..113643)) /locus_tag="Alide2_0105" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:107205" misc_feature complement(order(112753..112755,113110..113124, 113419..113421,113500..113502)) /locus_tag="Alide2_0105" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107205" misc_feature complement(113500..113502) /locus_tag="Alide2_0105" /note="catalytic residue [active]" /db_xref="CDD:107205" misc_feature complement(112474..112677) /locus_tag="Alide2_0105" /note="C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains; Region: ACT_ThrD-II-like; cd04886" /db_xref="CDD:153158" gene complement(113755..115416) /locus_tag="Alide2_0106" /db_xref="GeneID:10481122" CDS complement(113755..115416) /locus_tag="Alide2_0106" /inference="protein motif:PFAM:PF00441" /note="PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain-containing protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004386060.1" /db_xref="GI:330822757" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="GeneID:10481122" /translation="MDWTTHHVFNQFPELYDYDPLATDPALCEALARTGAGWARPALN GYAARLGRTETYMLAEQANRHLPELRRFDSRGRRIDALEFHPGWHALMALYRGQGLVS QPFREARAGRWAAWAAGFYLHGQVEQGTLCPATMTQAAIPLLQKEPALWAQLQERLYS DAYDARDLPVQDKASIWLGMGMTEKQGGSDVRANTTVATAVGAGGRGGEYLLRGHKWF FSAPQCDAHLVTARVQEGGPFACFYVPRWRPDGSRNAVRVQRLKDKLGNRSNASGEVE FEDAWGVLMGEEGRGIPTIIEMAGYTRLNCVAGSAAILRQATVQAIAYARQRHAFGKA LAEQPLMRAVLADLALESEASLVLLMRLAEAFEREGDGDPAQRAWKRAMTPAAKFWVC KRAVELTGEAMEVFGGNGYVEDGVMARLFREAPVNSIWEGSGNVMCLDVLRALAREPG AARALLAELQPAAQGEPRIAAALQGLQALLAASADELEALGRVLAQRLVLVAQACLLR AHAPACVADAFIATRLGDGGAGRVAGAIDTRGMDVDAILARAFPA" misc_feature complement(113767..115416) /locus_tag="Alide2_0106" /note="isovaleryl CoA dehydrogenase; Provisional; Region: PRK11561" /db_xref="CDD:183199" misc_feature complement(114076..115350) /locus_tag="Alide2_0106" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(114112..114114,114118..114120, 114124..114132,114757..114759,114763..114765, 114871..114873,114877..114879,115000..115002)) /locus_tag="Alide2_0106" /note="active site" /db_xref="CDD:173838" gene complement(115472..118192) /locus_tag="Alide2_0107" /db_xref="GeneID:10481123" CDS complement(115472..118192) /locus_tag="Alide2_0107" /EC_number="3.6.3.2" /inference="protein motif:TFAM:TIGR01524" /note="SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, magnesium-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal" /codon_start=1 /transl_table=11 /product="magnesium-translocating P-type ATPase" /protein_id="YP_004386061.1" /db_xref="GI:330822758" /db_xref="GO:0005524" /db_xref="GO:0015444" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR004014" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006068" /db_xref="InterPro:IPR006415" /db_xref="InterPro:IPR008250" /db_xref="GeneID:10481123" /translation="MHPHIPREVFAGFLRTRRMVRHFRRRALLETLGRTGVSRELPAA QSRALAAAADADAGALLRQLGSAETGLTEAQADAIRERAGPNEVEHEKPLPWWVHLWH CFRTPFSLLLTLLAAISLFTRDMKGALVIGTMVVLATLLRFWQEGRSSKAADALKAMV GNTATVLRGSLPEDAGVRRVELPIRLLVPGDLVVLSAGDMIPADCRVLAAKDLFVAQA AMTGESMPVEKSAARCGAGAGNPLELDNIVFMGTNVVSGSATAVVLATGGGTYFGALA GRVIATDRAPTSFQSGVNKVSWLLIRFMSAMAPLVFFINGFSKGDWLEALLFALAIAV GLTPEMLPMIVTSTLAKGAVFLSRKKVIVKRLDAIQNFGAMDVLCTDKTGTLTQDRIF LARHVDAWGEESGDVLELAYLNSYYQTGLKNLLDVAVLEHAEVHRELEPARNFRKVDE IPFDFDRRRMSVVVAEHGAHHLLITKGAVEEVLAVCTQVRHGAATEPLTPALLERIRA VTAGLNEEGLRVVAVAARQGPPTQDVYGLADESALTLVGYVAFLDPPKDSTAAALKAL AGRSVAVKVLTGDNELVAAKICREVGLAQQGVLRGGDVERMGDEELGHAVERHNLFAR LTPMHKERIVRRLKANGHVVGFMGDGINDAPALRAADIGISVDSAVDIAKEAADIILL EKSLMVLEQGVQEGRRTFANMLKYIRMTASSNFGNVLSVLTASAFIPFLPMLPIHLLV QNLLYDISQIAIPFDNVDEELLRRPLRWQPGDIGRFMVFFGPVSSVFDITTFAMMWFV FGAQTPAQQTLFQSGWFVVGLLTQTLIVHMIRSPGLPFVQSRAATPLLVMTGAIMAVG IFLPMGPLAHYFRLQALPPLYFALLPAIVLGYMAATQAMKGIYRRRWGWQ" misc_feature complement(115475..118192) /locus_tag="Alide2_0107" /note="magnesium-transporting ATPase MgtA; Provisional; Region: PRK10517" /db_xref="CDD:182511" misc_feature complement(117872..>117997) /locus_tag="Alide2_0107" /note="Cation transporter/ATPase, N-terminus; Region: Cation_ATPase_N; cl02930" /db_xref="CDD:194483" misc_feature complement(117083..117805) /locus_tag="Alide2_0107" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature complement(116105..>116395) /locus_tag="Alide2_0107" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature complement(115505..116005) /locus_tag="Alide2_0107" /note="Cation transporting ATPase, C-terminus; Region: Cation_ATPase_C; pfam00689" /db_xref="CDD:189671" gene complement(118327..119358) /locus_tag="Alide2_0108" /db_xref="GeneID:10481124" CDS complement(118327..119358) /locus_tag="Alide2_0108" /EC_number="2.1.1.13" /inference="protein motif:PRIAM:2.1.1.13" /note="KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent); PFAM: Homocysteine S-methyltransferase" /codon_start=1 /transl_table=11 /product="methionine synthase" /protein_id="YP_004386062.1" /db_xref="GI:330822759" /db_xref="InterPro:IPR003726" /db_xref="GeneID:10481124" /translation="MTLPHYTRAQQLPAILEQRIAILDGAMGTMIQRFKLTEEQYRGE RFKDFARDVKGNNELLSLTRPDVIRDIHEGYLAAGADLIETNTFGATSIAQEDYGMAD LAYEMNLESARLARAACGKFSTPDKPRFVAGALGPTPKTASISPDVNDPGARNVTFEQ LRAAYLEQALALIAGGADVLLVETIFDTLNAKAALFAIDEAFEQTGECLPIMISGTVT DASGRILSGQTVTAFWHSVRHANPLSIGLNCALGAALMRPYIQELAKAAPDTFISCYP NAGLPNPMSDTGFDETPEVTSRLVHEFATERLVNIVGGCCGTTPDHIGAIARAVAPVG ARRLFSAVS" misc_feature complement(118366..119343) /locus_tag="Alide2_0108" /note="Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]; Region: MetH; COG0646" /db_xref="CDD:30991" misc_feature complement(118369..119310) /locus_tag="Alide2_0108" /note="Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]; Region: MHT1; cl14105" /db_xref="CDD:187229" gene complement(119355..120356) /locus_tag="Alide2_0109" /db_xref="GeneID:10481125" CDS complement(119355..120356) /locus_tag="Alide2_0109" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_0175 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386063.1" /db_xref="GI:330822760" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481125" /translation="MAGQSPLRGVPGTSLLRGLSASSANRNVNGPAGIMSGMKLHQLR YFAVLAEELHFGRAAERLAITQPPLSSGIKALEEELGVRLFERTSKYVALTPAGHAYL AEVRMVLDHVARAGETARAVAAGLQGRLDIGFTGSMVYRDMPRIVRAFGERAPGIDVQ LRELSSSEQIDALLHRQLHAGFINTAAVPPGLLCRPLAADHFVCCLPQGHALAHGASV ALPALEQESFVMFARDVAPANHDNVIALFQRAGIHPRTRHAARQWLTVVSLVALGMGV ALVPASLAQAGVQGVCFLPIAGLHHPTVGVLAWHEGTDAPALRVFLESAEPFLQSGP" misc_feature complement(119388..120239) /locus_tag="Alide2_0109" /note="DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986" /db_xref="CDD:182183" misc_feature complement(120060..120239) /locus_tag="Alide2_0109" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(119388..119972) /locus_tag="Alide2_0109" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like_2; cd08448" /db_xref="CDD:176139" misc_feature complement(order(119487..119489,119541..119546, 119550..119555,119571..119576,119631..119636, 119736..119738,119868..119870,119874..119876, 119880..119882,119904..119906,119913..119918, 119922..119927,119934..119936,119955..119957)) /locus_tag="Alide2_0109" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176139" misc_feature complement(order(119640..119642,119661..119666, 119805..119807,119952..119954)) /locus_tag="Alide2_0109" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176139" gene complement(120381..121544) /locus_tag="Alide2_0110" /db_xref="GeneID:10481126" CDS complement(120381..121544) /locus_tag="Alide2_0110" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004386064.1" /db_xref="GI:330822761" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481126" /translation="MNFALTPEQEQIKAAIERVCEPFDADYWLKKDQEGGFPHDFHQA LAESGWLGIAMPEEYGGAGLGISEAALMMHTISATGAGLSGASAVHMNIFGLHPVVVF GTDEQKKRWLPPLIQGKDKACFGVTEPNAGLNTLKLQTRAVREGDHYVVHGQKVFIST AQVANKILLLTRTRPAEECKGTEGLTLFYTDLDRSKVEVREIAKLGRKCVDTNQLFID GLRIPVEDRVGEEGKGFSYILHGMNPERILIAAEAVGLGRAALARAAGYAAEREVFGR PIGKNQAIQHPLAEAWMDLEAAHLMVQKAAWLYDQGANCGAEANAAKFLGAEAGYRAC ERAIFTHGGMGYAKEYHVERYMRESWIPRLAPVSPQLILCFIAEKVLGLPKSY" misc_feature complement(120384..121544) /locus_tag="Alide2_0110" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(120462..121526) /locus_tag="Alide2_0110" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(121068..121070,121074..121076, 121167..121169,121173..121175,121263..121265)) /locus_tag="Alide2_0110" /note="active site" /db_xref="CDD:173838" gene complement(121541..121924) /locus_tag="Alide2_0111" /db_xref="GeneID:10481127" CDS complement(121541..121924) /locus_tag="Alide2_0111" /inference="protein motif:PFAM:PF07883" /note="PFAM: Cupin 2, conserved barrel; KEGG: aav:Aave_0177 cupin 2 domain-containing protein" /codon_start=1 /transl_table=11 /product="cupin 2 barrel domain-containing protein" /protein_id="YP_004386065.1" /db_xref="GI:330822762" /db_xref="InterPro:IPR013096" /db_xref="GeneID:10481127" /translation="MTTSRYLVRAAGVPSYQPANHHHTHNQRLIGPETVGAKQMEVLL GTLHKGGGALPHAHPGIEQACYLLEGTARAQVEDEAFDMVPGDMCFFPADKMHVFTVT SDQPVKLLVIYSPPYGESPDKVIRP" misc_feature complement(121586..121789) /locus_tag="Alide2_0111" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene complement(121941..122906) /locus_tag="Alide2_0112" /db_xref="GeneID:10481128" CDS complement(121941..122906) /locus_tag="Alide2_0112" /inference="similar to AA sequence:KEGG:100487983" /note="KEGG: xtr:100487983 UPF0065 protein in clcB-clcD intergenic region-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386066.1" /db_xref="GI:330822763" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481128" /translation="MKTILRATLAACALAIGATAALAQAYPNAPVTLVVPFAAGSGTD SVARAVASGLAARLKQPVVVDNKPGANAQVAAQFVAKAKPDGYTLFMTTNTSHSANPA LYKNLKYDPIKDFTPVARVGELPFALAVHPALPVKTLAELLDYARANPGKLSYATPNS TSLVAMESIKHIAKIDVLGVPYKSSPQAMTDLVGGQVQVYVADLGSGMGMLKTDKVRT LGITTAEPTPLLPGVPPIGKTVKGFDLTSWNGIFGPAGLPPAVVLRLNTELQAVLADK DLQDKLAQIGFQVWPSKTPEEFAQYVAGQLTHWRTLIQQAGIQPE" sig_peptide complement(122835..122906) /locus_tag="Alide2_0112" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.740 at residue 24" misc_feature complement(121950..122831) /locus_tag="Alide2_0112" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(121953..122771) /locus_tag="Alide2_0112" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 123164..125032 /locus_tag="Alide2_0113" /db_xref="GeneID:10481129" CDS 123164..125032 /locus_tag="Alide2_0113" /inference="protein motif:TFAM:TIGR01389" /note="TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: dia:Dtpsy_0103 ATP-dependent DNA helicase RecQ; SMART: RQC domain; Helicase, C-terminal; DEAD-like helicase, N-terminal; Helicase/RNase D C-terminal, HRDC domain" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase RecQ" /protein_id="YP_004386067.1" /db_xref="GI:330822764" /db_xref="GO:0004003" /db_xref="GO:0008026" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR002121" /db_xref="InterPro:IPR004589" /db_xref="InterPro:IPR006293" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR018982" /db_xref="GeneID:10481129" /translation="MSPAHFVLHDVFGYDQFRGPQQAIIDHVIAGGDALVLMPTGGGK SLCYQVPAIVRRDAGRGVTVVVSPLIALMHDQVGALHEAGVEAAFLNSTLDWQQTLDV ERRLSRGEITLLYAAPERVTTDRFLGLLDGLHERGLLSLFAIDEAHCVSQWGHDFRPE YRQLSILHERYPRVPRIALTATADALTRADIVEGLRLQEARQFVSSFDRPNIRYRLEE KKEPLTQLMRFIDREHLGDAGVVYCQSRKRVEELAQALCDAGLTALPYHAGLPAEVRQ QNQDRFLREDGIVMVATIAFGMGIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGLPA DAWMAYGLQDVVNQRRMIDESPAGEEFKAVMRGKLDALLALAEATDCRRVRLLGYFGE QSEPCGNCDNCLNPPAVWDGTDAARKLLSTIYRVHQASGISFGTGHIMDIVRGKDTDK VRQFGHEKLSTFGVGKEYTEAQLRGVLRQLLATGAVGLHKVMLESGHSFDTLVLTDGS RPVLRGEQHVQLREATAQAQAAAKPKRARRAATPPVAAANLGQDAQVRFINLKAWRAE VAREHNLPAYVIFHDATLAAIAERNPATLDELQGISGMGVKKLEAYGEDVVRVCRQ" misc_feature 123182..125026 /locus_tag="Alide2_0113" /note="ATP-dependent DNA helicase RecQ; Region: recQ; TIGR01389" /db_xref="CDD:130456" misc_feature 123260..123673 /locus_tag="Alide2_0113" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 123284..123298 /locus_tag="Alide2_0113" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 123596..123607 /locus_tag="Alide2_0113" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature 123794..124177 /locus_tag="Alide2_0113" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(123893..123904,123962..123967,124040..124048) /locus_tag="Alide2_0113" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(124064..124066,124127..124129,124139..124141, 124148..124150) /locus_tag="Alide2_0113" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 124394..124699 /locus_tag="Alide2_0113" /note="RQC domain; Region: RQC; pfam09382" /db_xref="CDD:192276" misc_feature 124841..125023 /locus_tag="Alide2_0113" /note="HRDC domain; Region: HRDC; cl02578" /db_xref="CDD:154997" gene complement(125036..125716) /locus_tag="Alide2_0114" /db_xref="GeneID:10481130" CDS complement(125036..125716) /locus_tag="Alide2_0114" /inference="protein motif:TFAM:TIGR02495" /note="KEGG: ajs:Ajs_0085 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic-like; PFAM: Radical SAM" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside-triphosphate reductase activating protein" /protein_id="YP_004386068.1" /db_xref="GI:330822765" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR012840" /db_xref="GeneID:10481130" /translation="MAAATPAEALRIGGLTPLTTIDFPGRLAAVVFCQGCPWRCGYCH NTGLLDAATPTAHAWADVQQLLHARRGLLDGVVFSGGEPTLQAGLPDALARVRAMGFA TGLHTAGMYPERLATLLPLLDWVGLDIKAPLHRYDAITRTPGSGAKAWESLRLVLASG VAHECRTTWNAGLYGDDDLQALADALAAEGVQHWALQECRTDGAPAWAPPQAVAQRWP GTFTLRRA" misc_feature complement(<125213..125629) /locus_tag="Alide2_0114" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(125213..125215,125339..125341, 125393..125401,125471..125476,125480..125482, 125585..125593,125597..125599,125603..125605, 125609..125611)) /locus_tag="Alide2_0114" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene complement(125694..125894) /locus_tag="Alide2_0115" /db_xref="GeneID:10481131" CDS complement(125694..125894) /locus_tag="Alide2_0115" /inference="similar to AA sequence:KEGG:Dtpsy_0105" /note="KEGG: dia:Dtpsy_0105 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386069.1" /db_xref="GI:330822766" /db_xref="GeneID:10481131" /translation="MSHFSTTEQAALAAVQLTDDERQPCEVWTRVMGYHRPVASFNVG KQGEHNERQFFSEHARGCSNAC" misc_feature complement(125739..>125822) /locus_tag="Alide2_0115" /note="anaerobic ribonucleoside-triphosphate reductase; Region: NrdD; TIGR02487" /db_xref="CDD:162883" gene complement(125977..128007) /locus_tag="Alide2_0116" /db_xref="GeneID:10481132" CDS complement(125977..128007) /locus_tag="Alide2_0116" /inference="protein motif:TFAM:TIGR02487" /note="KEGG: dia:Dtpsy_0106 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP-cone" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside-triphosphate reductase" /protein_id="YP_004386070.1" /db_xref="GI:330822767" /db_xref="GO:0008998" /db_xref="GO:0016491" /db_xref="InterPro:IPR005144" /db_xref="InterPro:IPR012833" /db_xref="GeneID:10481132" /translation="MTPPPAPVATLPRDVIQRNGERAAFDAERIRSAIARAGSATGDF GADEAQLLTAQATKVLIHRFRGEAPAIEQIQDVVEQTLIAANHLQTARAYMAHRQRHA LLRADRQTLVHVESSINEYLTRADWRVNANANQGYSLGGLILNVAGKVTANYWLSHVY APEIGEAHRSGDIHIHDLDMLSGYCAGWSLRTLLHEGLNGVPGKVEAGSPKHMSSAVG QIVNFLGTLQNEWAGAQAFSSFDTYMAPFVRKDGMDYAAVRQCIQELVYNLNVPSRWG TQTPFTNLTFDWTCPEDLRDQVPVIGGVEMPFCYGELQAEMDLINRAYIDVMTTGDAK GRVFTFPIPTYNITPDFPWESENAAALFDMTAKYGLPYFQNFINSELSPNMVRSMCCR LQLDLRELLKRGNGLFGSAEQTGSLGVVTVNCARLGYLHAGDEAGLFAALDRLLELGK QSLEVKRKLIQRLMDQGLFPYTKRYLGTLRNHFSTLGVNGINEMVRNFTHDAHDITST WGHAFALRLLDHVRARMTAFQEETGHLYNLEATPAEGTTYRFAKEDKKRWPAILQAGT AEQPYYTNSSQLPVGFTDDPFEALQRQEALQGKYTGGTVLHLYMGERISSGAACRELV KRALTNFRLPYITVTPTFSICPTHGYLAGEHPFCPTCDEERLAAKRRHLLAA" misc_feature complement(126016..127977) /locus_tag="Alide2_0116" /note="anaerobic ribonucleoside triphosphate reductase; Provisional; Region: PRK08270" /db_xref="CDD:181341" misc_feature complement(127705..127965) /locus_tag="Alide2_0116" /note="ATP cone domain; Region: ATP-cone; pfam03477" /db_xref="CDD:190653" misc_feature complement(126016..127617) /locus_tag="Alide2_0116" /note="Class III ribonucleotide reductase; Region: RNR_III; cd01675" /db_xref="CDD:153084" misc_feature complement(order(126361..126363,126370..126381, 127246..127248,127342..127344,127351..127356, 127363..127365,127375..127380,127387..127395, 127477..127482,127486..127488)) /locus_tag="Alide2_0116" /note="effector binding site; other site" /db_xref="CDD:153084" misc_feature complement(order(126376..126378,126385..126387, 126754..126756,126835..126840,127165..127167, 127306..127308,127453..127455)) /locus_tag="Alide2_0116" /note="active site" /db_xref="CDD:153084" misc_feature complement(order(126025..126027,126034..126036, 126064..126066,126073..126075)) /locus_tag="Alide2_0116" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:153084" gene complement(128132..131434) /locus_tag="Alide2_0117" /db_xref="GeneID:10481133" CDS complement(128132..131434) /locus_tag="Alide2_0117" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-4; KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PAS" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase" /protein_id="YP_004386071.1" /db_xref="GI:330822768" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10481133" /translation="MMHPTHRTELRKSLYWLAGLLAGLLLVQLFPAPDAARGLARYLP LHTSMEVLSIAMAAMVFGIAWATQKYRPNGRDLVLGPGLLGVAILDMSHCLSYAGMPD FITPNGPEKAILFWLAARSLAALALLCAAFWPQRHDNRLGPRARCWSLACVLLFVGAV HYVVLLHPQSVPPTFIPDVGLTKFKIDFEYGLIAAYVLAGMGFLTHLRQDREFGLTRL ALAAFTMAMGEFFFTLYANVTDIYNVTGHLYKIMACAFLYRGLFVETVQAPYQELQAS EAQHRAMLDTLPDLLFELNRQGVYLSVHANDASKLAAPAGQLLGRRLGEILPAQAAAA CLDALAEAERSGVARGQRFRLALPSGVHHFELAIARKANPAGREDTYLTLVRDITATV HDEQRIAFEARLNASLLDLQHSDVQELEADFLQRGIRHVERLTHSPFAVLHFVHDGQD PELAACSAGAAGGMPAQAEVWRQECAAQRIQNQPPPGDALLRWMSLPVQEGGRTRMLL GVANKAEDYDRQDAQALQALAYAIWRRVVQRRQDAVILRLSEALEQSPHQVVITDVRA NVLYVNRAFSEVSGYSAQEILGKNPRMLQSGLTPRSVYEEMWRRLPQGQPWQGELVNR RKNGHIYTEIVSLYPIRDLSGQVTHYVAHKEDITVQREAEERIQALSNFDTLTGLLNK KSFDERLALAIERAGASHGRLSMLWFDLDNFKLINESLGHTAGDELLVEAANRLRSCL GTQNALARYSGDAFVAIVPQADQASVALMAQEALRLLQTATSVQGHPVSVSASAGVAV YPDDARTAGTLASAAELAMYRVKEDGRNGLRFFAPEMQAHTQRSLELAAGLKDAARKG ELFLVYQPQRALGSGALVGAEALLRWRHPQWGLVSPAEFIPIAEQSGAITAIDFWVVE QAAQQLRAWDAAGLPPLVVAVNVSAAQFARPQLAEELLHILQRVDVSPQRIEVELTEA VALKHPELAETTIRRLHDMGFKVALDDFGTGYSSMSYLKRYTIDKLKIDQSFVRELAE KTSDMAIVTAIVRMAHSLHLSTLAEGVETAEQAALLHDCGCDEIQGYWYSRPLEPRAF EAFAKGLPQRGA" misc_feature complement(130259..130585) /locus_tag="Alide2_0117" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(129434..129796) /locus_tag="Alide2_0117" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(129464..129760) /locus_tag="Alide2_0117" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(129551..129553,129566..129568, 129644..129655,129692..129694,129710..129712, 129722..129724)) /locus_tag="Alide2_0117" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(129524..129526,129530..129532, 129614..129619,129626..129628,129650..129652, 129662..129664)) /locus_tag="Alide2_0117" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(128948..129421) /locus_tag="Alide2_0117" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(129179..129181,129308..129310)) /locus_tag="Alide2_0117" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(129176..129187,129191..129193, 129257..129259,129269..129271,129281..129286, 129293..129295)) /locus_tag="Alide2_0117" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(129119..129121,129203..129205)) /locus_tag="Alide2_0117" /note="I-site; other site" /db_xref="CDD:143635" misc_feature complement(128174..128890) /locus_tag="Alide2_0117" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(131720..132148) /locus_tag="Alide2_0118" /db_xref="GeneID:10481134" CDS complement(131720..132148) /locus_tag="Alide2_0118" /inference="protein motif:PFAM:PF01814" /note="PFAM: Haemerythrin/HHE cation-binding motif; KEGG: dia:Dtpsy_0108 hemerythrin HHE cation binding domain-containing protein" /codon_start=1 /transl_table=11 /product="Hemerythrin HHE cation binding domain-containing protein" /protein_id="YP_004386072.1" /db_xref="GI:330822769" /db_xref="InterPro:IPR012312" /db_xref="GeneID:10481134" /translation="MNIDRFKHDHVDILGQIDRLRQLAHAGVEGNAAAIARGIVAISS TIKLHLAVEDRLLYPALSQSGNPELARLSQRFQHDMGSIATAFMAFARRWNTAESVRG DPQSFRREANDVLRRVYERMQRENREFYPRIEAEEAMATH" gene complement(132218..134527) /locus_tag="Alide2_0119" /db_xref="GeneID:10481135" CDS complement(132218..134527) /locus_tag="Alide2_0119" /inference="similar to AA sequence:KEGG:Dtpsy_0109" /note="KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit" /codon_start=1 /transl_table=11 /product="nitric oxide reductase large subunit" /protein_id="YP_004386073.1" /db_xref="GI:330822770" /db_xref="GeneID:10481135" /translation="MGKYAKYWYTLIGVLIVTFSLLGYYGAEVYRTAPPIPGQVLVQG SDKPLYTKDSILDGQTAWQSVGGMQLGSILGHGAYQAPDWTADWLHRELTAWLELAAQ KDYGKSFAELDAGQQAVLRDRLKTEYRTNTYDQAKDTVVISPLRAQAIAETAQYYDKL FSDDPSLHKSRESFAMKENTLPSAERRAQMAGFFFWTAWAAATERPTDVGGGNGATYT NNWPHEPLIGNQPTGENMVWSIMSVVIMMAGVGFLVWGWAFLRKHDEQDPVPPAHDPL SRVALTPSQRALGKYLFLVVALFVFQVFIGGFTAHYTLEGQKFYGIDLSQWFPYALTR TWHIQAALFWIATGFLAAGLFLAPVINGGKDPKYQKLGVDVLFWALVVVCVGSFIGNY LAIAHILPKEWSFWLGHQGYEYVDLGRLWQIGKFAGIAFWLLLMARAIFPALLAPNGQ DKNLLALLTSSVVCIGLFYGTGLFYGERTHISVMEYWRWWVVHLWVEGFFEVFATTAL AFIFSTLGLVSYRMATAASLASASLFMLGGVPGTFHHLYFAGTTTPVMAVGASFSALE VVPLVVLGHEAWEHWRLQHKTPWMANLRWPLMCFVAVAFWNMLGAGVFGFMINPPISL YYIQGLNTTPVHAHAALFGVYGFLALGFTLLVLRYVRPQMVFNERLMKTGFWWLNAGL VLMISTSLLPIGLFQFHASVTHGLWYARSEEFLQQPFLETLRWIRTFGDVVFITGALC VAWQVASAVLFGARTPAAPSTGALAGASR" misc_feature complement(132281..134518) /locus_tag="Alide2_0119" /note="Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily...; Region: Heme_Cu_Oxidase_I; cl00275" /db_xref="CDD:193743" gene 134679..136280 /locus_tag="Alide2_0120" /db_xref="GeneID:10481136" CDS 134679..136280 /locus_tag="Alide2_0120" /inference="protein motif:PFAM:PF00158" /note="KEGG: dia:Dtpsy_0110 anaerobic nitric oxide reductase transcription regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Fis family sigma54 specific transcriptional regulator" /protein_id="YP_004386074.1" /db_xref="GI:330822771" /db_xref="GO:0003700" /db_xref="GO:0005524" /db_xref="GO:0008134" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481136" /translation="MTVKEAELATVLVDLCADLGTELPQAVRLQRLVDVLRAQFGCGA VALLRLEEERLRPMAVAGLVSDTLGRRFVVGQHPRLAAILARHEVTCFEHDSTLPDPY DGLLDTLVGEPLPVHDCMGVGLHVEGRPWGVLTLDALATGTFGAAARRRLAQSVPLVE AVVRVARLEQELRTLRMAASGPGEGGAALASSERGGVGELEIVGESPALKRLLHELGI VAASELPVLLLGETGVGKELFARLLHHQSPRHDRPLVHVNCAALPESLAESELFGHVR GAFSGAVSDRPGRFEAAEGGTLFLDEVGELPLSVQAKLLRTLQNGEIQRLGADRPRSV NVRVIAATNRNLREQVASGAFRADLYHRLSVYPVPIPPLRERGNDVLLLAGRFLDFNR ARLGLRSLRLSPDAQAALRRYRWPGNVRELEHVISRAALKALSRGADRNSIVTLEEGL LDLDALDVPAADGPAAPAAPGPAAGAAPAAPAGTLRDTVDACQRQAIIAALDRHQGNW AQAARALDVDSSNLHKLARRLGLKS" misc_feature 134700..136277 /locus_tag="Alide2_0120" /note="anaerobic nitric oxide reductase transcription regulator; Provisional; Region: PRK05022" /db_xref="CDD:179916" misc_feature 135351..135770 /locus_tag="Alide2_0120" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 135366..135389 /locus_tag="Alide2_0120" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(135369..135392,135579..135581,135705..135707) /locus_tag="Alide2_0120" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 135567..135584 /locus_tag="Alide2_0120" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 135762..135764 /locus_tag="Alide2_0120" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(136333..136995) /locus_tag="Alide2_0121" /db_xref="GeneID:10481137" CDS complement(136333..136995) /locus_tag="Alide2_0121" /inference="protein motif:PFAM:PF08768" /note="PFAM: Domain of unknown function DUF1794; KEGG: ctt:CtCNB1_2843 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386075.1" /db_xref="GI:330822772" /db_xref="InterPro:IPR014878" /db_xref="GeneID:10481137" /translation="MENFPQDIYTEPEPDADTLANLGPLTGMAGIWTGTRGLDVNPKA DGPERQAFIEHMELQPIDAQTNGPQLFYGLRYHTRIVKPDGVETFHDQVGYWLWEPAT GTVIQTLSIPRGQAAMAVGHAEAGARTFRLQAVRGSTVNGIVSNTFLEHAFRTESYTI TVSIHDDGTWSYEQDTVLIIPGQAEPFHHTDRNTLRKIGEPVPNPTARAAARTPGDAQ GR" misc_feature complement(136405..136932) /locus_tag="Alide2_0121" /note="nitrobindin heme-binding domain; Region: nitrobindin; cd07828" /db_xref="CDD:143652" misc_feature complement(order(136423..136428,136462..136464, 136468..136470,136474..136476,136534..136536, 136540..136542,136663..136665,136726..136731, 136756..136758,136840..136842,136846..136848, 136855..136860)) /locus_tag="Alide2_0121" /note="heme-binding site [chemical binding]; other site" /db_xref="CDD:143652" gene 137233..138621 /locus_tag="Alide2_0122" /db_xref="GeneID:10481138" CDS 137233..138621 /locus_tag="Alide2_0122" /EC_number="4.3.1.17" /inference="protein motif:TFAM:TIGR00720" /note="TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: dia:Dtpsy_0112 L-serine dehydratase 1; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain" /codon_start=1 /transl_table=11 /product="L-serine dehydratase 1" /protein_id="YP_004386076.1" /db_xref="GI:330822773" /db_xref="GO:0003941" /db_xref="InterPro:IPR004644" /db_xref="InterPro:IPR005130" /db_xref="InterPro:IPR005131" /db_xref="GeneID:10481138" /translation="MAVSVFDLFKIGIGPSSSHTVGPMRAARLFVQRLAREGHLPRVA RVRCTLYGSLGATGRGHGSDRAVLLGLCGHAPDTVDVDAIEPLIARIRARHRLPLADG PEVAFDEAADLLLVPDVALPLHANGMRFEAFDAAGGLLDAQVYYSVGGGFIVSGEAAV DARRQAEIAPDTEVLPLPFHSGEQLLAQAAAQGGSMARVMRVNERHWRTDSEIDAGLL AIWGAMQDCVARGCRTGGVLPGGFRVRRRAPALHQALQGAPDTLQDPLQVIDWVNLFA LAVNEENAAGGRVVTAPTNGAAGIVPAVLHYYWRFIAGASEAGVIDFLLTAGAIGILY KENASISGAEVGCQGEVGVACSMAAAGLCAVLGGMPAQVENAAEIGMEHHLGLTCDPV GGLVQIPCIERNALAAVKAINAARMALRGDGTHHVSLDQVIKTMRETGADMMSKYKET SRGGLAVNIVEC" misc_feature 137239..138609 /locus_tag="Alide2_0122" /note="L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720" /db_xref="CDD:188076" misc_feature 137263..137709 /locus_tag="Alide2_0122" /note="Serine dehydratase beta chain; Region: SDH_beta; pfam03315" /db_xref="CDD:190598" misc_feature 137866..138606 /locus_tag="Alide2_0122" /note="Serine dehydratase alpha chain; Region: SDH_alpha; cl12120" /db_xref="CDD:196345" gene 138753..139703 /locus_tag="Alide2_0123" /db_xref="GeneID:10481139" CDS 138753..139703 /locus_tag="Alide2_0123" /inference="similar to AA sequence:KEGG:100490070" /note="KEGG: xtr:100490070 protein bugT-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386077.1" /db_xref="GI:330822774" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481139" /translation="MPLRRRLIAFCLAALPLATWAAWPERPITIVVPAAAGGTTDIAA RVLAEKMGKDLGTAIVVENKGGGGGSIGTAQVARAKPDGYTLLMGNIGPVAINFSLYK QLSYKESDLRGITNVISVPNILVVHADSPARSVKDLVGLAKTRRLNVSTSGVGQSPHM SSEMFRQKAGIEVTLVPFPGAAPAVTALLGQQVDFMIDNLPSSMPHIKSGKFRALAIT SGERAAQLPDVPTMAEAGVPMQVTAWFGLLAPAGTPDAVILRLQQSARKAMHEPDVRQ RFAELGGVPGGETPAEYDAFIAQERKSWAQIVKAAGLSLE" sig_peptide 138753..138818 /locus_tag="Alide2_0123" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" misc_feature 138825..139691 /locus_tag="Alide2_0123" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 138882..139691 /locus_tag="Alide2_0123" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 139708..141282 /locus_tag="Alide2_0124" /db_xref="GeneID:10481140" CDS 139708..141282 /locus_tag="Alide2_0124" /EC_number="6.2.1.26" /inference="protein motif:PRIAM:6.2.1.26" /note="KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="YP_004386078.1" /db_xref="GI:330822775" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10481140" /translation="MPMQADIEHLLAQPFGSLPELIARQAAHRPGHTALILEERSLDY AALCAGMDRVARSLQQGGLGPGDVVAVCAGTSVEYLLAYLGALRAGVAVAPLAPSATA EHLSAMLDNCGARLVLRDREVAAQWPLHAGAALRCVALDDAPEAGEPWSQWLAQGGGA PAPIAPAPDWAFNVIYSSGTTGVPKGIVQSWAMRWAHVRRAVTNGYGPDAVSLCATPL YSNTTLVAALPTLALGGTLVLMRKFDAAHYLELAERHGATHTMLVPVQYQRLMACPAF DGTDLSRLRHKFCTSAPFGAALKAEVLRRWPGRLIEYYGLTEGGVRCELHCHDFPHKL HTVGRPGEGADIRFIDEQGRELPPGAQGEIVGRSAGMMSGYHRLPDKTREAEWFDAQG QRFIRSGDVGRLDEDGFIVLGDRMKDMIITGGFNVYPSDIEGVLQQHPQVAECAVVGV PSEQWGETPVAYVVPRAGAQPGARELREWLNARVGKTQRVADLRLAERLPRSEIGKVL KRELREQYLRANPAAH" misc_feature 139756..141255 /locus_tag="Alide2_0124" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature <140218..141255 /locus_tag="Alide2_0124" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 141300..142292 /locus_tag="Alide2_0125" /db_xref="GeneID:10481141" CDS 141300..142292 /locus_tag="Alide2_0125" /inference="similar to AA sequence:KEGG:Ajs_0099" /note="KEGG: ajs:Ajs_0099 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386079.1" /db_xref="GI:330822776" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481141" /translation="MPIRPSRPRRAMLAGLALGVGALLAPAAQAADAWPAKPIQLVIP YPPGGSADLLGRPLAVQLQQQLGQPVVLEYKPGAGGTLATQYLARAKPDGYTVLMVLA AHAINDSLYPKLPYDTRKDFAPVSLVANLPMVVAASAKLQARNIQELVQAAKAAPGKL TFGSAGNGNTGHLAAEYFSSIAGVKMTHVPYKGSAGVVNAMLAGDIDLTFDSISTSMP HIRSGRMHALAVTSAQRSALAPEVATVQEQGIPGFEVTGWYALIAPAGTPPDIRQRLA REIAAALRQPQLQSQLAAGGYEPVGSTPEALQAHIDSEIARWAAVVKSTGAKVD" sig_peptide 141300..141392 /locus_tag="Alide2_0125" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 31" misc_feature 141408..142277 /locus_tag="Alide2_0125" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 141516..142280 /locus_tag="Alide2_0125" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 142305..142760 /locus_tag="Alide2_0126" /db_xref="GeneID:10481142" CDS 142305..142760 /locus_tag="Alide2_0126" /inference="protein motif:TFAM:TIGR00369" /note="KEGG: dia:Dtpsy_0117 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily" /codon_start=1 /transl_table=11 /product="phenylacetic acid degradation-like protein" /protein_id="YP_004386080.1" /db_xref="GI:330822777" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10481142" /translation="MQHHSIAINDIPPSPFAGEPPDMFFGLPMAMARAMALRGERIGN DMAQVRLGFQPDQANSRGDVHGGSIATLLDCTLAAAVRSHDPAAYGVATIDLTLHFVT AAGGDLIATAHCERRGRSISFARGEVRAEDGTLVALATGSFKLIARRQD" misc_feature 142413..142739 /locus_tag="Alide2_0126" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(142494..142496,142581..142583,142602..142613) /locus_tag="Alide2_0126" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(142497..142499,142503..142505,142512..142514, 142584..142598,142602..142604) /locus_tag="Alide2_0126" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(142500..142502,142524..142529,142536..142541, 142581..142583) /locus_tag="Alide2_0126" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(142782..143792) /locus_tag="Alide2_0127" /db_xref="GeneID:10481143" CDS complement(142782..143792) /locus_tag="Alide2_0127" /inference="similar to AA sequence:KEGG:Dtpsy_0118" /note="KEGG: dia:Dtpsy_0118 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386081.1" /db_xref="GI:330822778" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481143" /translation="MAHDTPLARCSRRQLLAMAAGAAAAGPLHAQAQAGFATRPVRVV VPFAAGGATDVITRVLGEHMARRFGQPVVVDNKPGAAGLIAGEAVVKSAPDGMTALLG TTSTMLTNKYLYQKTAYDPLTDLTPLVRVCLAPIALVVSADVPARNMQEFMAWIRANK GRLSYGSYGIGSHGQLACATLSDIAGADMSHVAYKGEAPMVQDLLGGQIKMGMGSLLS LKAHIDAGKLRALAMTGPRRVPLLPDVPTFAEAGYPQDALALVGWLAIAGPKGMPAQV ARQWAEAANQAVASRDGMARIIAAGFVPVDDDTPEKFARLWAQEAPIWGRLLQAAGVQ PT" sig_peptide complement(143700..143792) /locus_tag="Alide2_0127" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.889 at residue 31" misc_feature complement(142791..143687) /locus_tag="Alide2_0127" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(142797..143627) /locus_tag="Alide2_0127" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(143832..144818) /locus_tag="Alide2_0128" /db_xref="GeneID:10481144" CDS complement(143832..144818) /locus_tag="Alide2_0128" /inference="similar to AA sequence:KEGG:Dtpsy_0119" /note="KEGG: dia:Dtpsy_0119 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386082.1" /db_xref="GI:330822779" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481144" /translation="MAITRRKTLARCLPLIALAAACGMGGAQAQDSYPSKPIRVIVPY PAGGGTDTIARLIGTQLSQRLGQPVVVENKPGASGILGNDIVAKAPGDGYTVLMGITA LVQIPALYKKVPYKLGDLAPVSQIAKSADLLMVPRSSGVTTLQQFVDKAKAAPGTLNY GSYGNATSSHMNGERFKQKAGIDITHIPYQGSGPEMAALLGGQLTLAFVDATGAYPHI KSDKVNILAITGSQRHPALPQVPTMTESGYPGLEANGWFGMFVPASTPKAIVDKLGAE VASIVKSPELNKRLTDMGLIAVGSLPDDLKAQVDKDAAHWKSVAESARISMD" sig_peptide complement(144729..144818) /locus_tag="Alide2_0128" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 30" misc_feature complement(143838..144731) /locus_tag="Alide2_0128" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(143844..144662) /locus_tag="Alide2_0128" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(144851..146005) /locus_tag="Alide2_0129" /db_xref="GeneID:10481145" CDS complement(144851..146005) /locus_tag="Alide2_0129" /EC_number="1.3.99.13" /inference="protein motif:PRIAM:1.3.99.13" /note="KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="Long-chain-acyl-CoA dehydrogenase" /protein_id="YP_004386083.1" /db_xref="GI:330822780" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481145" /translation="MQDLIQRTIYREDHEQFREQARRFFDKEIVPFHAQWERDGIVPK EVWRKAGREGLLNTMLPEPYGGGGDFGHAAILIEEVARTGASGLGFPLHSDIVAPYIH AYGSTGQKDRWLPRMAAGELIGAIAMTEPGAGSDLKSVRTTARLVKDSEGDHYILNGS KTFITNGINSEIVIVVAKTNPELGAKGVSLIVVEEGTPGFSKGRKLEKIGLMAQDTSE LFFDNVKVPVGNLLGEENMGFKYLMKELAQERLVVAVRAAASIEAFLQKTVDYTRERK AFGQTVFEFQNTRFKLAEAKAQATMLRVFVDDCMRLHMQRQLTPERAAMVKLNATALQ NRLLDEFLQLHGGYGYMTEYQVGRAWTDARIGRIYGGSDEIMKEIIARTL" misc_feature complement(144854..145978) /locus_tag="Alide2_0129" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(144854..145972) /locus_tag="Alide2_0129" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(144887..144889,144893..144895, 144899..144907,145511..145513,145517..145519, 145622..145624,145628..145630,145718..145720)) /locus_tag="Alide2_0129" /note="active site" /db_xref="CDD:173838" gene complement(146081..147628) /locus_tag="Alide2_0130" /db_xref="GeneID:10481146" CDS complement(146081..147628) /locus_tag="Alide2_0130" /EC_number="6.2.1.26" /inference="protein motif:PRIAM:6.2.1.26" /note="KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="YP_004386084.1" /db_xref="GI:330822781" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10481146" /translation="MQDFFGRAQAAPERVVVFMADQGRSYTAGALAQMAQQTAQWLAA QGLQTGERFAVLLENRVEILALVLAARQAGLYAAVLSTHLTADEVAYIVGDSGARLVV ASDKTLSQLQGIGLPCWTVDEARPQAPSLHAALAALQGPPVDFADRPLGRDLLYSSGT TGRPKGVLKALWPAELRGQADPEAVGTARLLGMGEDTVYLSPAPLYHAAPLRYTLRAL ELGGRAVIMERFDAENALALIERYRVTHSQWVPTMFGRLLKLPAQVRQRHDLSSHHMA IHAAAPCPVDVKRAMLDWWGDILMEYYAGSEGCGTTMIDSTEWRLRPGSVGRPTTGRL HIVDDEGRELPAGEIGQVYFSGGGQFTYLNDPEKTRQAINDRGWVTYGDIGHVDAEGY LFLSDRRADLILSGGVNLYPQEIENALARHPGVQEVAVVGVPHPDFGEVPLAAVVLHP GQEATPETARAIAARAAEVLARLKLPQRMVFVDALPRLETGKLLRRQLKERFREQPQA GFALRDS" misc_feature complement(146105..147583) /locus_tag="Alide2_0130" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK08276" /db_xref="CDD:181347" misc_feature complement(146117..147553) /locus_tag="Alide2_0130" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 147834..149012 /locus_tag="Alide2_0131" /db_xref="GeneID:10481147" CDS 147834..149012 /locus_tag="Alide2_0131" /EC_number="2.3.1.16" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: Thiolase; KEGG: dia:Dtpsy_0122 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004386085.1" /db_xref="GI:330822782" /db_xref="GO:0003941" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10481147" /translation="MKNPVIVDAIRSPMARAKPDGALAQLHPVDLLSQVLQQLVERNK IDPGSVDDVICGCVSQSGEQANTPGRLAWLAAGLPMHVPSTTIDRKCGSSQQAVHFAA QAIMAGVQDIVIACGVESMSRVPMGSSRMGKNTTGARFDALYAPGLVGQGVSADLVAA KWGLGRTELDAYAARSHQRAHAAQAGGGFAREIVGMDTPAGRVAQDETIRAGTTVEKL AGLKAVFETEELSARFPQIQWNTTAGNASQMTDGAAAMLIMSEERALQLGLTPRARFV AFDVVGDDPLYMLTAPIPATQRVLAKARMKLDDIHHYEINEAFASVPMAWQKELKADG ERLNPRGGAIALGHPLGASGIRLMTTMLHALEDSGQRYGLQSMCEAGGMANATIIERL " misc_feature 147834..149009 /locus_tag="Alide2_0131" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK07801" /db_xref="CDD:181123" misc_feature 147846..149006 /locus_tag="Alide2_0131" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(147906..147908,147987..147989,148029..148031, 148041..148043,148053..148055,148086..148097, 148119..148121,148140..148145,148152..148154, 148197..148199,148665..148667,148671..148673, 148677..148679,148737..148739,148974..148979) /locus_tag="Alide2_0131" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(148104..148106,148875..148877,148965..148967) /locus_tag="Alide2_0131" /note="active site" /db_xref="CDD:29411" gene 149068..149835 /locus_tag="Alide2_0132" /db_xref="GeneID:10481148" CDS 149068..149835 /locus_tag="Alide2_0132" /EC_number="1.1.1.178" /inference="protein motif:PRIAM:1.1.1.178" /note="KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-hydroxy-2-methylbutyryl-CoA dehydrogenase" /protein_id="YP_004386086.1" /db_xref="GI:330822783" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481148" /translation="MKLQQGMTALVTGGVSGLGEASAIALLERGLQVVAVDLNDERGQ AMEKQYAGRLRYVKADVSDEAQMQQAIAAAEAFGNFRALVHCAGIGGPVRLVEKDGSP GSLEKYVNIIRVNQIGTFNTLRLAAASMARNEPVDGERGACVLTASVAGYEGQIGQIP YASSKAGVIGMTIVAARDLASKFIRVCTIAPGLFDTPILAKLPENVRQSLAASVPHPA RLGHPAEYAMTALHILENPMLNGETIRLDGAIRMQPR" misc_feature 149068..149826 /locus_tag="Alide2_0132" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557" /db_xref="CDD:180126" misc_feature 149083..149829 /locus_tag="Alide2_0132" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(149104..149106,149110..149115,149119..149121, 149176..149184,149323..149331,149503..149511, 149548..149550,149560..149562,149638..149649) /locus_tag="Alide2_0132" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(149410..149412,149509..149511,149548..149550, 149560..149562) /locus_tag="Alide2_0132" /note="active site" /db_xref="CDD:187535" gene 149904..150902 /locus_tag="Alide2_0133" /db_xref="GeneID:10481149" CDS 149904..150902 /locus_tag="Alide2_0133" /inference="similar to AA sequence:KEGG:Dtpsy_0125" /note="KEGG: dia:Dtpsy_0125 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386087.1" /db_xref="GI:330822784" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481149" /translation="MPPCNRRRALHLTGACALLALGALATAPAARADAAWPTRPITFV IPGAAGGTTDTPARFMAQKLGERLGQPIVVDNKPGAGGMLGAGLVARAQPDGYTVLVG NTGSNAINYSAYQKLGYKPDDFIALTDMISFANVLVVPVKSPIKSLGELVAAAKKEPG KLAFSSAGVGQTTHLMGELLRQRAGVDVVHVPYKGSAPATMAIVSGETQFMFDNLTGS LAHVKDGKLRALAVTGATREPELPDVPTMTELGMKDFDKVGWMGFFLPAKTPPEIVKK LTDNLVAVLKDPAVVQRYRELGGRRGGMASAQFSQMVERDRKDWGELIRSQKLQLD" sig_peptide 149904..150002 /locus_tag="Alide2_0133" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.858 at residue 33" misc_feature 150009..150893 /locus_tag="Alide2_0133" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 150069..150881 /locus_tag="Alide2_0133" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 150912..151718 /locus_tag="Alide2_0134" /db_xref="GeneID:10481150" CDS 150912..151718 /locus_tag="Alide2_0134" /EC_number="1.3.1.34" /inference="protein motif:PRIAM:1.3.1.34" /note="KEGG: ajs:Ajs_0109 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="2,4-dienoyl-CoA reductase" /protein_id="YP_004386088.1" /db_xref="GI:330822785" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481150" /translation="MTDTSSFAGRHVFVAGGSSGINLGIAQAFARAGAHVTVMSRSPD KVQQAAEGLRALGAQALGISADVRDSAAVDAALRQSHALFGDIDVLVSGAAGNFIAPA KDLSPNGFRTVIDIDLNGSFHVLRLAYPLLRKPGASVINISAPQGVNPTMYQVHACAA KAGIDMMTRVLAMEWGEDGVRVNAIAPGPIADTEGMRRLAPSPEALANAVASVPLQRM GTLEDIAHMALFLSSPQAGYVTGAVIPVDGGSSLRGGRDMRASYTPRGAA" misc_feature 150912..151676 /locus_tag="Alide2_0134" /note="short chain dehydrogenase; Provisional; Region: PRK07576" /db_xref="CDD:181043" misc_feature 150930..151667 /locus_tag="Alide2_0134" /note="Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; Region: TER_DECR_SDR_a; cd05369" /db_xref="CDD:187627" misc_feature order(150957..150959,150966..150974,151029..151037, 151104..151115,151188..151196,151257..151259, 151335..151343,151392..151394,151470..151481, 151485..151487) /locus_tag="Alide2_0134" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187627" misc_feature order(151032..151034,151113..151115,151194..151205, 151227..151229,151233..151238,151245..151247, 151341..151343,151347..151349,151380..151382, 151476..151478) /locus_tag="Alide2_0134" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187627" misc_feature order(151119..151121,151212..151220,151224..151232, 151239..151244,151251..151253,151263..151268, 151275..151280,151287..151289,151299..151301, 151317..151319,151347..151349,151359..151370, 151374..151376,151383..151388,151395..151400, 151407..151412,151416..151439,151443..151445, 151476..151478,151548..151556,151560..151568, 151578..151580,151587..151592,151599..151601, 151614..151616,151620..151637,151641..151667) /locus_tag="Alide2_0134" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187627" misc_feature order(151200..151202,151347..151349,151380..151382, 151392..151394) /locus_tag="Alide2_0134" /note="active site" /db_xref="CDD:187627" misc_feature order(151212..151220,151224..151226,151239..151244, 151251..151253,151266..151268,151275..151280, 151359..151370,151374..151376,151383..151388, 151395..151400,151407..151412,151419..151421, 151428..151433) /locus_tag="Alide2_0134" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187627" gene 151715..151819 /locus_tag="Alide2_0135" /db_xref="GeneID:10481151" CDS 151715..151819 /locus_tag="Alide2_0135" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386089.1" /db_xref="GI:330822786" /db_xref="GeneID:10481151" /translation="MSGGRQRMRTGVEMVGAVQCFLEKKPQPFQRPGC" gene 151856..152635 /locus_tag="Alide2_0136" /db_xref="GeneID:10481152" CDS 151856..152635 /locus_tag="Alide2_0136" /inference="protein motif:PFAM:PF09339" /note="KEGG: dia:Dtpsy_0128 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004386090.1" /db_xref="GI:330822787" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10481152" /translation="MNTDADGKLVSALVRGISILRCFGHKRTELSARELMELTGLPKP TLFRLTDTLCELGLLRYSERLSKYVPGLGLLQLSSPVLTRMALRQFARPLMQSLADLT EGQVQLGVGHKRELCLVELANGMGNSVYRPEIGVRMSLSRTATGRAYLLGMADDAREA YLQDLQASDPQRAAWLAQRLVNAREDMERHGFCRSHGDLHSEIESIAVPMSQPQDGEL WIFAVSVPVFSPLYDRLESDLGPRLRTLVRSVEAVVGAGVP" misc_feature 151883..152155 /locus_tag="Alide2_0136" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 151886..152623 /locus_tag="Alide2_0136" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 152252..152587 /locus_tag="Alide2_0136" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 152730..153839 /locus_tag="Alide2_0137" /db_xref="GeneID:10481153" CDS 152730..153839 /locus_tag="Alide2_0137" /EC_number="5.1.99.4" /inference="protein motif:PRIAM:5.1.99.4" /note="KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="alpha-methylacyl-CoA racemase" /protein_id="YP_004386091.1" /db_xref="GI:330822788" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481153" /translation="MKVLDSVRVLEIGGLGPGPFCAMHLADLGADVISVVRKDQGGSP TGSLLNRGKRSVFADLKTEEGRRLVLALVQDADALIEGMRPGVMERLGLGPEECLALN PRLVYGRMTGWGQSGPLAPRAGHDANYAAVSGALWGSSPADARPVSPFAVLGDIAGGA MYLMTGLLSGILQARATGSGTVVDAAIVDGAAHMLNLNLSARQRGVVADERGRSMYDS SPFYETYVCADGKHVTLGAIEPQFYALLLATLGLAGDPDFAGDQWDKAAWPARRARLA ALFLTQPRAHWQALLEPTDVCFGAVLSPVEAAEHPHMRARGVYREHQGAFQAVPAPRF DGAPYLLGDMCAPGAHTEQVLAQLAAQGAKAVWRR" misc_feature 152739..153803 /locus_tag="Alide2_0137" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(153943..154359) /locus_tag="Alide2_0138" /db_xref="GeneID:10481154" CDS complement(153943..154359) /locus_tag="Alide2_0138" /inference="protein motif:PFAM:PF01796" /note="PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: reh:H16_A2147 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386092.1" /db_xref="GI:330822789" /db_xref="InterPro:IPR002878" /db_xref="GeneID:10481154" /translation="MSEAPARPLPQPTDLTRPYWQAAARGELHMQHCGACGRWQFYPR PFCIHCEAEALQWRPVAGTGKVYTYTVNHRAPNPFMKARLPYVVAMIELDEGPRLMAN VLDAQPGDMAIGRRVEVAFERVSDDMALPQFRLLAE" misc_feature complement(154192..154302) /locus_tag="Alide2_0138" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" misc_feature complement(153994..154191) /locus_tag="Alide2_0138" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene complement(154361..155521) /locus_tag="Alide2_0139" /db_xref="GeneID:10481155" CDS complement(154361..155521) /locus_tag="Alide2_0139" /inference="similar to AA sequence:KEGG:H16_A2148" /note="KEGG: reh:H16_A2148 acetyl-CoA acetyltransferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004386093.1" /db_xref="GI:330822790" /db_xref="GeneID:10481155" /translation="MNPSLSKSVAIVGVAESDLGKVPGKSALELQAQAAMLALADAGL KLADVDGVFAHTDDRFSSLQVSEFLNLRPRFVDSTSVGGMSNLLHVQRAMAAIAAGMC EVALITYGSTQLSDGSRKGGAVAADLPHTPRGQFILPYGHLSPIGYYAMVAQLHMHRY GTTPRDLAEVAVAARRWAQLNPKAYRREPTSIDEVMASPLVAEPLRQRDCCLVTDGGG AMVVVSAGRARDLRQKPVYVLGAAETHAHHYTPFNTDDWLDTGVASTAEAALRMAGVT RADIDVVQIYDHFTIGVIQSLEELGFCQRGEGGAFVADGALAPGGRLPVNTSGGGLSY GHPGMFGMFVAIEAVRQLRGECGERQLPKAELALCHAPGLVFSCNTTMILGV" misc_feature complement(154367..155521) /locus_tag="Alide2_0139" /note="thiolase; Provisional; Region: PRK06158" /db_xref="CDD:180434" misc_feature complement(154373..155488) /locus_tag="Alide2_0139" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature complement(order(154514..154516,154664..154666, 155273..155275)) /locus_tag="Alide2_0139" /note="active site" /db_xref="CDD:29416" gene complement(155544..156701) /locus_tag="Alide2_0140" /db_xref="GeneID:10481156" CDS complement(155544..156701) /locus_tag="Alide2_0140" /EC_number="1.3.99.13" /inference="protein motif:PRIAM:1.3.99.13" /note="KEGG: reh:H16_A2149 acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="Long-chain-acyl-CoA dehydrogenase" /protein_id="YP_004386094.1" /db_xref="GI:330822791" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481156" /translation="MPMTSVSETPRPMFGAEHALYRASVARFIANEITPHHAEWEREG RVPRQLWRDAGAAGLLCPSIADAYGGGGGDYLYSAIVVEEIARALATGVTGFTTHSEN VAPYLLEFGSEAQKREFLPKMASGEVVGSLAMTEPGAGSDLKAIRTTAKAVDGGFEIT GQKTFITNGAHADRVIVFAKTSPEAGARGISLFWVDTKTPGFAVGRVLDKIGQLAQDT AELFFDKVFVPRDALIGELNAGFGYAMSGLVRERLLIALRCAVALEVALDWTIDYVKQ RQAFGHALIDNQYIRFRLADIKTHAAATRAFVDSCLAQYLQGQLTADGAAMAKLWASE ATRAIDDLMQFFGGNGYMREYPIARAYADVRPNRIYGGSSEIMREVIARGL" misc_feature complement(155547..156662) /locus_tag="Alide2_0140" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(155547..156656) /locus_tag="Alide2_0140" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(155580..155582,155586..155588, 155592..155600,156201..156203,156207..156209, 156300..156302,156306..156308,156396..156398)) /locus_tag="Alide2_0140" /note="active site" /db_xref="CDD:173838" gene complement(156736..158277) /locus_tag="Alide2_0141" /db_xref="GeneID:10481157" CDS complement(156736..158277) /locus_tag="Alide2_0141" /EC_number="6.2.1.26" /inference="protein motif:PRIAM:6.2.1.26" /note="KEGG: reh:H16_A2150 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="YP_004386095.1" /db_xref="GI:330822792" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10481157" /translation="MSPLEQWARERPEGIAYRMVPSGHAVSWRELELRSRKLSAAMMQ AGLRAGDGIALMLENHLRYFEILWAAHRIGLYYTPISRHLKTEEMGHIVRDCDAKWLF CSARTAGELDAQVLRGLPVRRVMLDGQADGFDEYEALIAAYADDVALPETPEGMDFCY SSGTTGLPKGIKRALADAGKHFASKSDPRTHWKDFDASSVYLSTAPFYHTAPVRWNMA VMRAGGHCVMMEKFDAGLALQAIDRFKVTHAQFVPTMFIRMLRLPDDVKAQYDPGSLR YAVHAAAPCPATVKRAMIDWWGPILYEFYSGTELVGRTSLDSHEWLAHPGSVGRAEVG QIHIVDEAGRELPPGENGVIYFSDGPRFEYHKDPAKTHSAYNDRGWATYGDIGHVDEE GYLYLTDRLANTIVSGGVNIYPQEAENVLHEHPAVLDVAVVGVPDAEFGEAVKAVVQL QPPHQASPALAAELIAYCRERISTLKCPRSVDFVDTLPRAESGKLLKRLVKARYWNGG RGIAH" misc_feature complement(156757..158235) /locus_tag="Alide2_0141" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK08276" /db_xref="CDD:181347" misc_feature complement(156787..158208) /locus_tag="Alide2_0141" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(158264..159199) /locus_tag="Alide2_0142" /db_xref="GeneID:10481158" CDS complement(158264..159199) /locus_tag="Alide2_0142" /EC_number="4.2.1.107" /inference="protein motif:PRIAM:4.2.1.107" /note="KEGG: reh:H16_A2151 putative acyl dehydratase; PFAM: MaoC-like dehydratase" /codon_start=1 /transl_table=11 /product="3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase" /protein_id="YP_004386096.1" /db_xref="GI:330822793" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10481158" /translation="MAIDYDTLRQWQIADQRDRYGVDDCIRYALSLGMGADPLDEANL RYVLEGENMSVMPTWLACVGAPGAWASDPGTGIDWMQILHGEHRMRFHAAPPPKGEVL SQTRISRVVDKGAGKGALVVTERRASNAATGQLLATVEHVSFCRADGGFSSPAQPGDC APQALPAVPEREPDATMDMATLPGAALLYRLNGDRNPIHAQLGAARAAGFDRPILHGL CTFGMAARALVRMACGNDPARLASIAARFSAPVFPGDTLQARLWFERDGDARQARFSV WARERGRMVLSHGVADIRKPLASAGTARGQAHVTA" misc_feature complement(158303..159142) /locus_tag="Alide2_0142" /note="enoyl-CoA hydratase; Region: PLN02864" /db_xref="CDD:178455" misc_feature complement(158318..158695) /locus_tag="Alide2_0142" /note="HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit; Region: HDE_HSD; cd03448" /db_xref="CDD:48043" misc_feature complement(order(158597..158599,158609..158611, 158615..158617,158627..158632,158639..158641, 158648..158650)) /locus_tag="Alide2_0142" /note="dimer interaction site [polypeptide binding]; other site" /db_xref="CDD:48043" misc_feature complement(order(158327..158329,158345..158347, 158372..158374,158378..158380,158417..158419, 158459..158461,158465..158467,158471..158473, 158480..158482,158516..158518,158528..158530, 158537..158539,158546..158548,158552..158554, 158603..158605,158612..158614,158618..158620, 158636..158638)) /locus_tag="Alide2_0142" /note="substrate-binding tunnel; other site" /db_xref="CDD:48043" misc_feature complement(order(158546..158551,158558..158560, 158603..158605,158612..158614,158618..158623, 158633..158635)) /locus_tag="Alide2_0142" /note="active site" /db_xref="CDD:48043" misc_feature complement(order(158549..158551,158603..158605, 158612..158614,158618..158620)) /locus_tag="Alide2_0142" /note="catalytic site [active]" /db_xref="CDD:48043" misc_feature complement(order(158480..158482,158486..158488, 158516..158518,158525..158527)) /locus_tag="Alide2_0142" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:48043" gene complement(159217..160140) /locus_tag="Alide2_0143" /db_xref="GeneID:10481159" CDS complement(159217..160140) /locus_tag="Alide2_0143" /EC_number="1.1.1.35" /inference="protein motif:PRIAM:1.1.1.35" /note="KEGG: reh:H16_A2152 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase" /protein_id="YP_004386097.1" /db_xref="GI:330822794" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481159" /translation="MNAQARPMDGKVVVVTGAGNGIGRATALLLAGQGASVVVNDLGA SGSGEGSDAGPAQKVVDEITAAGGVAVANTDSVATPEGANAIIQTAITRFGRIDGVVN NAGILRDRIFHKMNREEWQAVIDVHLNGSYYVSRAAAPYFKDQENGAYVHMTSTSGLV GNFGQANYAAAKLGIAALSKSIALDMARFHVRSNCIAPFAWSRLIGTLPSETEAEKKR LERMQSMKPEQVAQVAAFLLGNAARDISGQIFAVRGNEVMVMSQPRPVASVHSGEGWD AQSLADRAMPALRRAFTPLERSPEVFNWDPV" misc_feature complement(159367..160122) /locus_tag="Alide2_0143" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(159361..160116) /locus_tag="Alide2_0143" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(159538..159549,159625..159627, 159637..159639,159676..159684,159826..159834, 160012..160020,160075..160077,160081..160086, 160090..160092)) /locus_tag="Alide2_0143" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(159625..159627,159637..159639, 159676..159678,159760..159762)) /locus_tag="Alide2_0143" /note="active site" /db_xref="CDD:187535" gene complement(160166..161149) /locus_tag="Alide2_0144" /db_xref="GeneID:10481160" CDS complement(160166..161149) /locus_tag="Alide2_0144" /inference="similar to AA sequence:KEGG:H16_A2153" /note="KEGG: reh:H16_A2153 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004386098.1" /db_xref="GI:330822795" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481160" /translation="MWSRIFQMGAPVIAAVSLALPLSAHSQGEVFKASKPMHIVAPSS PGGILDQTSRLVAKALTDIVGQPVIVDNHPGAGGTIGIQTMLRAEPDGHTLVMGSLGP NAANYTLQDKLPYTAADMTGVIRVLTMPDVVVVNPKLPVKSIAELKAYAQNSPNGVSM AVSTSGSSGHLAGAMLNQRAGIKAVEVVYRGASPALTDLVGGQVDYMVDNLITALPLV RSGKLRAIAVTTRERSAELPDVPTLMELGYKDFDVSVWLGLFVSSKTPAATVQALNAA LNKALSDPQVQKTIAQQGGSATGGSTEEFAQFVRNETTRWAEVIRAGNIKP" sig_peptide complement(161069..161149) /locus_tag="Alide2_0144" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.883 at residue 27" misc_feature complement(160175..161128) /locus_tag="Alide2_0144" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(160175..160990) /locus_tag="Alide2_0144" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 161379..162164 /locus_tag="Alide2_0145" /db_xref="GeneID:10481161" CDS 161379..162164 /locus_tag="Alide2_0145" /inference="protein motif:PFAM:PF01614" /note="KEGG: reh:H16_A2154 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004386099.1" /db_xref="GI:330822796" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10481161" /translation="MATPDSEGFVRSFARGLRVIEAMGRTGAHTVSSVAQDTELPRTV ARRILLTLCELGYACPTPDKGFRLTPKVLSLGLTYLTSQPFWGHAQRVLETVCLQLRE SCAVAVMQGNEVVFVLRIPSAKVMSPHLGMGSRLPAYATAPGRVLLAYQGAGYQDQYF SQTPLCPLTGQTQTDPAELRHELARIAQQGHAWVEGEYDAHVSGLSLPIYDERRKVVA ALGASLLTSDFDRARAEREILPPLRAAAEQLSGLAPSFLAPVL" misc_feature 161394..162128 /locus_tag="Alide2_0145" /note="beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; Region: pcaR_pcaU; TIGR02431" /db_xref="CDD:131484" misc_feature 161406..161672 /locus_tag="Alide2_0145" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 161775..162128 /locus_tag="Alide2_0145" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene complement(162184..163440) /locus_tag="Alide2_0146" /db_xref="GeneID:10481162" CDS complement(162184..163440) /locus_tag="Alide2_0146" /inference="protein motif:PFAM:PF07690" /note="KEGG: ajs:Ajs_0113 major facilitator superfamily transporter; manually curated; PFAM: Major facilitator superfamily MFS-1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004386100.1" /db_xref="GI:330822797" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10481162" /translation="MPQFPVTVPASTSTHSRAQPLWVMLLALLSGFALSQSYRTITAI VAQGLQADFGLSAQSLGAFAGLFGLSFGVAQLLMGITMDRYGLRRTVLASAPLSIAGA ALSALAPSHGWLMAGQLLIGIGCSPAFLACTVFIARHFPSERFAFFSGLSLGMGGLGL MLTGTPLAWVVQHWGWRTGFGILAVLSALSWLLIFALVHEPSLPGRAPHAQESWGDSL RGLAELLTLPHTWGILALGMSCYAAFLSLRGLWLGPLLMDRFGFSLVDSGNVALVLSL ISLFAPGAFGRMDPGPLRRRAWVANASLLMAAMFAAMALLQQAGATVALMILLGLLWG FSVLQYTDVRASYPPELTGRALSLYTMSMFLGVALMQSATGAVAAWAAGRGIEPYLAV LLAIAGWLALASLAFRMLPASPLLRR" misc_feature complement(162334..163359) /locus_tag="Alide2_0146" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" gene complement(163481..164344) /locus_tag="Alide2_0147" /db_xref="GeneID:10481163" CDS complement(163481..164344) /locus_tag="Alide2_0147" /EC_number="4.1.3.34" /inference="protein motif:PRIAM:4.1.3.34" /note="KEGG: dia:Dtpsy_0131 HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain" /codon_start=1 /transl_table=11 /product="Citryl-CoA lyase" /protein_id="YP_004386101.1" /db_xref="GI:330822798" /db_xref="InterPro:IPR005000" /db_xref="GeneID:10481163" /translation="MTDLVRNACSFLFVPATQPDRLPKALASGADMVIADWEDAVTPA DKERARSALAGAVAALDGARRARLLVRINAEGTPWFATDLQALQQLMAQGLAGAVVPK AESAQTLQAVARAAGPQAALLPLVESVAGLYAVDVLAAAPQVARLAFGHLDFQVDAGM ACGPDEAELLPMRMAVVLAARRAGMAAPLDGVTVDTRNPERMASDAERARRMGFGGKL CIHPAQVPVLHAAFDPGEAAVAHARRVQQAMQEAGGGVCVLDGRMVDAPVLAQARQTL ERHAHAQRRSA" misc_feature complement(163484..164317) /locus_tag="Alide2_0147" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(164377..165372) /locus_tag="Alide2_0148" /db_xref="GeneID:10481164" CDS complement(164377..165372) /locus_tag="Alide2_0148" /inference="similar to AA sequence:KEGG:Dtpsy_0133" /note="KEGG: dia:Dtpsy_0133 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386102.1" /db_xref="GI:330822799" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481164" /translation="MKSFTLTTRRAVAGACALLALGLAGAAQAAWPDKPVTLVVPYSA GGPTDVVARLLAVPMGHSLGQTVVVENTVGAGGTIAPARVAKAKNDGYTILIHHMGMA TAPALYKKLPYDPLKDFEYIGQVLDVPMTLLSRKDFPVNTFPELLDYVKKNQDKVTLA NAGIGAVSQLCGMLFMHQVGVKLTTVPYKGAGPAMNDLMGGQVDLLCDQTTQTAPVIQ DGKRAKVFGVTTPKRLSSMPNLPTLDEQGLKGFDVKVWHGMYAPKGTPKEVIEQLTKA LNVAIKDENVKKRIAELSSDLVSPDKATPEGLRKHLEAEVARWDKVIKAAGVSAD" sig_peptide complement(165283..165372) /locus_tag="Alide2_0148" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 30" misc_feature complement(164389..165282) /locus_tag="Alide2_0148" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(164392..165222) /locus_tag="Alide2_0148" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(165446..166831) /locus_tag="Alide2_0149" /db_xref="GeneID:10481165" CDS complement(165446..166831) /locus_tag="Alide2_0149" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD; KEGG: dia:Dtpsy_0134 MmgE/PrpD family protein" /codon_start=1 /transl_table=11 /product="MmgE/PrpD family protein" /protein_id="YP_004386103.1" /db_xref="GI:330822800" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10481165" /translation="MKQEIQVSIHPLAQFAAQLQWSDVPAPVQDRAVDLWVDWFGSVL AGCKARPVASIARFAMSQGPASGPSEVIAQGASSSPMMAALANAAASHFAEQDDVHNG SVFHPAAVVFPPALAVAQAIGASGAELMAACVAGYEVGIRVGEFLGRSHYKVFHTTAT AGTLAAAAAVGRLLQLTPAQMQHAFGSAGTQSAGLWEFLRTAADSKQLHTAHAAAAGL MAAYLARDGFTGAQDIFTGAQGMAAGMSSDANPARLTDGLPNGGVGRWATAETSFKWH ASCRHTHPAADALQQVMREHGLKPADIAQVTCHVHQGAIDVLGPVVSPTTVHQSKFSM GTVLALAAHFGHAGLTEFDAQFLAPDTVALREKVRMELDAEVDAAYPQRWIGKVTVQT TDGRRLHGRVDEPKGDPGNTLSREEITAKALRLAAYGGAVGTAQATSAVASLWQVAQW PRVGDLLAAGA" misc_feature complement(165485..166798) /locus_tag="Alide2_0149" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene complement(166882..168063) /locus_tag="Alide2_0150" /db_xref="GeneID:10481166" CDS complement(166882..168063) /locus_tag="Alide2_0150" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386104.1" /db_xref="GI:330822801" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481166" /translation="MPRPLDGITVVSLEHAVAAPFCTRQLADLGARVIKVERPGSGDF ARGYDQRVRGQSSHFTWINRSKESLALDVKQPQAKAALMQLLKTADVLVQNLAPGAAA RMGLSYEALKEHNPRLIVCDISGYGADGPYRDKKAYDLLIQSEAGFLSVTGTPETPSK SGISVADIAAGMYAYSNILSALLLRARTGEGSHIDVSMLEAMGEWMGYPMYYAFDGAP PPPRTGASHASIYPYGPFTAGDGATVMLGLQNEREWKTFCDAVLQRPEVATDARFCSN AQRNQHRSELQALILEVFAALTAAQVVERLDAAAIANARVNDMAGLWAHPQLKARQRW RSVGTPAGEVPALLPPGVNSAFEYRMDAVPAVGQHTAAILAALGWTDGQIDALQAPQA T" misc_feature complement(166897..168063) /locus_tag="Alide2_0150" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(168074..169240) /locus_tag="Alide2_0151" /db_xref="GeneID:10481167" CDS complement(168074..169240) /locus_tag="Alide2_0151" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: dac:Daci_0198 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004386105.1" /db_xref="GI:330822802" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481167" /translation="MIEQTSSNNHHEIRDAIRALCAEFPDEYFRKVDEQRAYPAEFVD ALTKAGWMAALIPQEYGGSGLGLTEASVIMEEINRCGGNSGACHGQMYNMGTLLRHGS QAQKEKYLPKIASGEWRLQSMGVTEPTTGTDTTKIKTSAVKKDGRYVVNGQKVWISRV QHSDWMILLARTTPLAEVTKKSEGMSIFMVDLAEAQKKGLTVRPIPNMVNHETNELFF EDLEIPEENLIGEEGKGFKYILDGLNAERTLIAAECIGDGYWFLDRVTSYVKDRQVFG RPIGQNQGVQFPIADAFIEVEAANLMRWKACELFDRHEPMGAQANMAKYLAAKASWEA ANACLQFHGGFGFACEYDVERKFRETRLYQVAPISTNLIYSFVAEHILKLPRSF" misc_feature complement(168077..169207) /locus_tag="Alide2_0151" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(168092..169207) /locus_tag="Alide2_0151" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(168128..168130,168134..168136, 168140..168148,168767..168769,168773..168775, 168866..168868,168872..168874,168968..168970)) /locus_tag="Alide2_0151" /note="active site" /db_xref="CDD:173838" gene complement(169314..170198) /locus_tag="Alide2_0152" /db_xref="GeneID:10481168" CDS complement(169314..170198) /locus_tag="Alide2_0152" /inference="similar to AA sequence:KEGG:Dtpsy_0137" /note="KEGG: dia:Dtpsy_0137 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386106.1" /db_xref="GI:330822803" /db_xref="GeneID:10481168" /translation="MTDTTIDTALLAHLQTWQGRTETLSDSIAAVPVQALSATLDRDD PAPASGTPLPPLWHWMYFLPHARASEIGPDGHPKRGGFLPPVPLPRRMWAGGRLAWEP TNPLCVGQQVQRRSTIRSVKHKAGRTGELLFVLVEHQYHNERGLALTEEHDIVYRSAA RPGDPAPPPQTPPLAGQQAWSRAIVPDDVLLFRYSALTFNGHRIHYDRKYVTEVEGYP GLIVHGPLIATLLLDLLRREMPGAQVAAFDFRAVRPTFDLHPFSVHGKPSADGRTVEL WAQDHEGFLTMQGMATLA" misc_feature complement(169323..170159) /locus_tag="Alide2_0152" /note="Uncharacterized conserved protein [Function unknown]; Region: COG3777" /db_xref="CDD:33572" misc_feature complement(169317..169661) /locus_tag="Alide2_0152" /note="The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509" /db_xref="CDD:193847" misc_feature complement(order(169437..169448,169527..169532)) /locus_tag="Alide2_0152" /note="active site 2 [active]" /db_xref="CDD:48035" misc_feature complement(order(169464..169472,169491..169493, 169500..169505,169512..169514)) /locus_tag="Alide2_0152" /note="active site 1 [active]" /db_xref="CDD:48035" gene 170392..171309 /locus_tag="Alide2_0153" /db_xref="GeneID:10481169" CDS 170392..171309 /locus_tag="Alide2_0153" /EC_number="1.1.1.35" /inference="protein motif:PRIAM:1.1.1.35" /note="KEGG: dia:Dtpsy_0138 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase" /protein_id="YP_004386107.1" /db_xref="GI:330822804" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481169" /translation="MAQKMVQDKVVVVTGAGGGIGRDMALALAAAGAKVVVNDIGTST TGEGQDAGPAQKVVEEIRAAGGQAVANMDSVAEAAAAGRIVQCALDHFGRIDGVVNNA GILRDRFFHKMSLDEWDAVVKVHLYGSYYMARAAANHFKEQESGAFVHMTSTSGLIGN FGQANYSAAKLGLVALSKSIALDMQKFNVRSNCIAPFAWSRMIGSIPTDTPEQQARVA KIQQMTPNKIAPLAVYLLSDAAKDVNAQVFAVRNNEIFLMSQPRPVRSVHRSEGWTPE FIAEHGMPALKSSFVPMERSGDVFSWDPV" misc_feature 170491..171141 /locus_tag="Alide2_0153" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(170506..170514,170692..170700,170842..170850, 170887..170889,170899..170901,170977..170988) /locus_tag="Alide2_0153" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature 170533..171141 /locus_tag="Alide2_0153" /note="short chain dehydrogenase; Provisional; Region: PRK07060" /db_xref="CDD:180817" misc_feature order(170764..170766,170848..170850,170887..170889, 170899..170901) /locus_tag="Alide2_0153" /note="active site" /db_xref="CDD:187535" gene 171313..172206 /locus_tag="Alide2_0154" /db_xref="GeneID:10481170" CDS 171313..172206 /locus_tag="Alide2_0154" /EC_number="4.2.1.107" /inference="protein motif:PRIAM:4.2.1.107" /note="KEGG: ajs:Ajs_0121 dehydratase; PFAM: MaoC-like dehydratase" /codon_start=1 /transl_table=11 /product="3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase" /protein_id="YP_004386108.1" /db_xref="GI:330822805" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10481170" /translation="MAIDYRHLKNRAFEPVHQHYTERDTMLYALSLGLGNDPLDAAAL PFVYEGMSGGLRALPTLAVVLGYPGFWAREPDTGIDWVKLLHGEQRVRWHRPLPADCE VIGKSRITHLIDKGEGKGAILVTERLLETRAGALLATLQQVTFLRGDGGYSQHGGGQP SDEPLPALQPTPQDRAPDFTDTQAIRPEAALLYRLMGDYNPLHAEPEVARKAGFERPI LHGLASYGLVARAVLRQCAGGDPALLKALDIRFASPVYPGETLVTEIWRVPGQPGKIQ LRARVAERDKVVLSHGYAELA" misc_feature 171316..172200 /locus_tag="Alide2_0154" /note="enoyl-CoA hydratase; Region: PLN02864" /db_xref="CDD:178455" misc_feature 171832..172203 /locus_tag="Alide2_0154" /note="HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit; Region: HDE_HSD; cd03448" /db_xref="CDD:48043" misc_feature order(171874..171876,171883..171885,171892..171897, 171907..171909,171913..171915,171925..171927) /locus_tag="Alide2_0154" /note="dimer interaction site [polypeptide binding]; other site" /db_xref="CDD:48043" misc_feature order(171886..171888,171904..171906,171910..171912, 171919..171921,171970..171972,171976..171978, 171985..171987,171994..171996,172006..172008, 172042..172044,172051..172053,172057..172059, 172063..172065,172105..172107,172141..172143, 172147..172149,172174..172176,172192..172194) /locus_tag="Alide2_0154" /note="substrate-binding tunnel; other site" /db_xref="CDD:48043" misc_feature order(171889..171891,171901..171906,171910..171912, 171919..171921,171964..171966,171973..171978) /locus_tag="Alide2_0154" /note="active site" /db_xref="CDD:48043" misc_feature order(171904..171906,171910..171912,171919..171921, 171973..171975) /locus_tag="Alide2_0154" /note="catalytic site [active]" /db_xref="CDD:48043" misc_feature order(171997..171999,172006..172008,172036..172038, 172042..172044) /locus_tag="Alide2_0154" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:48043" gene 172289..173083 /locus_tag="Alide2_0155" /db_xref="GeneID:10481171" CDS 172289..173083 /locus_tag="Alide2_0155" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: dia:Dtpsy_0140 enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004386109.1" /db_xref="GI:330822806" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10481171" /translation="MSASPVLTSVQDGVGTITLNRPEARNALNQAMRPALAAAIAQMR DDKEVYAVILTGAGGAFCSGGDISAMLDTSRTGLTFRAGMRELHQWFPELVNLEKPVI AAVDGPAFGAGLSLALSADFVLATRRARFCAVFGRIGLIPDLGALHLLPRIVGMQKAK ELVFTARTVEVEEARQLGMVYDVVEDGAALHAAALALARRFGEASTAAIGMAKTIMNQ SFESSARTIAELESYGQAMCRGSAYHQEAVQRFKDKQPLRFDWDKK" misc_feature 172289..173056 /locus_tag="Alide2_0155" /note="Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Region: CaiD; COG1024" /db_xref="CDD:31227" misc_feature 172304..172849 /locus_tag="Alide2_0155" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(172361..172363,172367..172369,172463..172465, 172475..172489,172610..172612,172616..172624, 172688..172693,172700..172702) /locus_tag="Alide2_0155" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(172481..172483,172622..172624) /locus_tag="Alide2_0155" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(172562..172564,172586..172588,172649..172660, 172694..172705,172721..172723,172727..172735, 172739..172744,172757..172762,172766..172771, 172775..172780,172787..172789,172820..172822, 172829..172831) /locus_tag="Alide2_0155" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 173220..174503 /locus_tag="Alide2_0156" /db_xref="GeneID:10481172" CDS 173220..174503 /locus_tag="Alide2_0156" /inference="protein motif:PFAM:PF02550" /note="PFAM: Acetyl-CoA hydrolase/transferase; KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA hydrolase/transferase" /protein_id="YP_004386110.1" /db_xref="GI:330822807" /db_xref="GO:0003824" /db_xref="InterPro:IPR003702" /db_xref="GeneID:10481172" /translation="MSALADRLRQLIRPGDTLWWGQTTAEPLTLTRAVTAHRHALAQG ARLRVFVGIAASDTLAPEQADAIDFFGYAAGGAHRRLADAGVLDILPCHYSHLPGLIR AGVLPVDVVLLQVSPPDEQGRYSLGLAQEYLPAALEKARVVIAEVNPGIPWTHGGVHL RTGDFALCIDAEHPPLEQSRSAPGPAEQAIARHIAALVEDGATLQLGVGNLPEAVLAA LHGHRDLGLHSGAVGDGIARLAEAGVLTNAKKSVDAGVGVGGILMGSECLRRWAHRNQ QLALRGTEYTHDPEVLAASHKLAAINAAIEVDLTGQINAEVAAGCYVGAVGGAVDFLR GAARSKGGLPIVALPATAKGASRIVARLSGPVSTPRSDAGLIVTEHGVADLRGQPLSR RVRRLIDIAAPEHREDLERQAYETLRRCGAAFNQK" misc_feature 173220..173687 /locus_tag="Alide2_0156" /note="Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550" /db_xref="CDD:111448" misc_feature 173232..174497 /locus_tag="Alide2_0156" /note="Acetyl-CoA hydrolase [Energy production and conversion]; Region: ACH1; COG0427" /db_xref="CDD:30776" gene 174570..175778 /locus_tag="Alide2_0157" /db_xref="GeneID:10481173" CDS 174570..175778 /locus_tag="Alide2_0157" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: Thiolase; KEGG: ajs:Ajs_0124 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004386111.1" /db_xref="GI:330822808" /db_xref="GO:0003824" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10481173" /translation="MRRAAIVTPVRTPVGTFGGSLRPVPVEELAATTVRAVVQKSGID PARIDDVVMAQSYANSEVPCVGRWAALQAGLPVEVPGMQLDRRCGGGLQAIVTASMMV QSGAADVVIAGGVESMSNIEYYSTDMRWGARSGNVRFYDRLDRGRERSQPVERFGKIS GMIETAENLARDYSITRDEADAYALRSHQRAAAAWAAGRFADEVVPVQVPQRKGDPVT FARDEGFRADVTTESLAKLRVLMPNGTVTAGNASQQNDASAACLIVAEDKLAELGLTP MATLVGWAAAGCEPSHMGIGPVPAVKKLLARLSLKIDDMDLVELNEAFACQVLAVLKG WGWQDQGAIEHKLNVNGSGISLGHPIGATGVRILATLLHELQRRKGRYGLETMCIGGG QGIAAVFERV" misc_feature 174570..175775 /locus_tag="Alide2_0157" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK06205" /db_xref="CDD:180468" misc_feature 174582..175772 /locus_tag="Alide2_0157" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(174636..174638,174717..174719,174759..174761, 174768..174770,174780..174782,174813..174824, 174846..174848,174867..174872,174879..174881, 174924..174926,175416..175418,175422..175424, 175428..175430,175488..175490,175740..175745) /locus_tag="Alide2_0157" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(174831..174833,175641..175643,175731..175733) /locus_tag="Alide2_0157" /note="active site" /db_xref="CDD:29411" gene complement(175793..176716) /locus_tag="Alide2_0158" /db_xref="GeneID:10481174" CDS complement(175793..176716) /locus_tag="Alide2_0158" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0188 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386112.1" /db_xref="GI:330822809" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481174" /translation="MDLNLVRMFIAIAESRNLTDAARRSGMTRSNVSRRLKALEREYG AQLLRRTTRHVELTQAGRILYGHCQQAMNELQDAQRKIEQMHRTVSGEIRVRIPTGLG HFYLKPLILEFCKNHPELQLRLVINDQIHDLVASKVDLAIHITSAPLVDHVATKVCDI RWCLVCTPQYLQQHALHLEQPVDLKQARLIAPLALGQRVEFTGPGGAGKVLVQHGASI QSGDYQFLFNAASQGLGIALLPSYAVCEALKRGDLVRVLQRYEVMGIGNALYVVRASN RQPSAATVAFIDLLTTSVRAMAPHWDLHDAP" misc_feature complement(175817..176716) /locus_tag="Alide2_0158" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(176531..176710) /locus_tag="Alide2_0158" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(175847..176446) /locus_tag="Alide2_0158" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422" /db_xref="CDD:176114" misc_feature complement(order(175910..175912,175997..175999, 176048..176050,176237..176239,176243..176245, 176285..176287,176402..176404,176414..176416)) /locus_tag="Alide2_0158" /note="putative effector binding pocket; other site" /db_xref="CDD:176114" misc_feature complement(order(176021..176023,176030..176035, 176054..176068,176153..176155,176339..176359, 176363..176365,176375..176377,176384..176389, 176393..176398,176408..176413)) /locus_tag="Alide2_0158" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176114" gene 176894..178078 /locus_tag="Alide2_0159" /db_xref="GeneID:10481175" CDS 176894..178078 /locus_tag="Alide2_0159" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: dac:Daci_0189 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386113.1" /db_xref="GI:330822810" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481175" /translation="MGTTPVQELMPLQGFTVLDLSQGVAGPYCAQLLAGQGARVIKVE PPQGDWGRHVGVASDGHSTISSTYNSGKQSLAIDARRPEGRAVILRLAERADVIVQNF RPQVVERLGLDYESLRARGLGPVYVSISGYGPDGPFADHPATDSVMQADSGLMHTNRD AGGTPQRIGLLLADIAAGVYAAQACTAALLHKTRTAEGSHVQISLFNVCCALQSTVFS EELAGAQAARQPVSAPNGIFDAADGKLTILALNNEQFLRICKAFDLRHWETDPRFASN ALRLEHKALLHAELSRKVAPQSLAQLEALLGQHQVLHARVREGRGVVEHPQARHLHTF QTIEQPGFGPLLWAAAPWACHAGAAQPAPRIGEHSQAILHGLGLDAQEIAALVAQQVV AV" misc_feature 176924..178042 /locus_tag="Alide2_0159" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 178093..179118 /locus_tag="Alide2_0160" /db_xref="GeneID:10481176" CDS 178093..179118 /locus_tag="Alide2_0160" /EC_number="1.6.5.5" /inference="protein motif:PRIAM:1.6.5.5" /note="PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dac:Daci_0190 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase" /codon_start=1 /transl_table=11 /product="NADPH:quinone reductase" /protein_id="YP_004386114.1" /db_xref="GI:330822811" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="InterPro:IPR020843" /db_xref="GeneID:10481176" /translation="MNTMKALVCREFGPPQDVVALQDVAPAPRAGMDEVLIEVHYATV SHATGLLIEGRYQKTPPLPFVPGTEGVGRVLACGGDVGHVRPGDLVAFICDWGAYGEQ IVVHGATVYPIVAGLGALQALAVPISYGTAYAALHWRAQLRQGDTVLVLGAGSGVGAA AVELARLVEGVTVIACASSAQKRQAALQGGAHHAVGPDGLIGQVKKLTQGRGADLVFD PVGGDLLLQALRCTAQNGKIVSIGFASGTIPQVPMNILLVKNLTVFGFFYGQYIGWTP ANERVKYAAQMQAMMAELFALARRGAIHPAVTQVFPMDQLCQALSALHGRNVVGKVAL AIKGDIP" misc_feature 178102..179100 /locus_tag="Alide2_0160" /note="NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604" /db_xref="CDD:30949" misc_feature 178102..179094 /locus_tag="Alide2_0160" /note="Quinone oxidoreductase (QOR); Region: QOR1; cd08241" /db_xref="CDD:176203" misc_feature order(178225..178230,178471..178473,178483..178485, 178546..178548,178555..178563,178621..178626, 178636..178638,178747..178749,178813..178818, 178822..178827,178888..178896,179068..179070, 179074..179076,179080..179082) /locus_tag="Alide2_0160" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176203" gene 179115..180140 /locus_tag="Alide2_0161" /db_xref="GeneID:10481177" CDS 179115..180140 /locus_tag="Alide2_0161" /inference="similar to AA sequence:KEGG:100498142" /note="KEGG: xtr:100498142 UPF0065 protein in clcB-clcD intergenic region-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386115.1" /db_xref="GI:330822812" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481177" /translation="MKQHPHHATPAWHGSRRKALQALASAAALGAAALAPAVARAATD YPKAPIRLVVPYPPGGPTDLVGRVVAVAMGDILKQSIFVDNKPGASGMVGSAMVAKAP ADGYTLLSNASLHVINPAVYDKVPYDAFNDFAPITQIVDVPLVLVVRSDMPVSSVQEL IAYLKQSKGAVNFASAGNASSQHLSGELFKIRTGIAMQHVPYKGSSPALTDLMGGQVQ LMFDSMPSAMPFITSGKLKALAVTTRKRSSSLPQVPTMQEAGVAGFETSTWYGLWAPR NTPADVVGVLAKAAQEALRKPEVAAQYQRMGAEPVGSSPQEFEAYMKSEEKKWAEIVR LSGAKAD" sig_peptide 179115..179240 /locus_tag="Alide2_0161" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.955 at residue 42" misc_feature 179241..180125 /locus_tag="Alide2_0161" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 179307..180128 /locus_tag="Alide2_0161" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(180171..181079) /locus_tag="Alide2_0162" /db_xref="GeneID:10481178" CDS complement(180171..181079) /locus_tag="Alide2_0162" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_3679 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386116.1" /db_xref="GI:330822813" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481178" /translation="MKILSPSLIELHAFLAVCRQGSFRRAADDLCVTQAAVSRAVQRL EEHLAAGRLFERSPAGVVLTPRGAQWRKLVERHVLALESAAETLGRASRPRLVRLSVI PTLSIQWLMPRLPGFHERSPGVKVELRQFRHDEDFTRDDVDLWLDVKRPSRRWPERIQ TRYLIGRELIPVCTARLAKAYRTPRDLQGATLLHHTNFPDNWARWFAKAGAPCTPRLG PGFDLTMHLIVAAKAEMGVAVVPACLVERELRAGELVMPFDVEVSSGRGYFLCWKRDA AAFAAREEFSGWLLEQAHAGGGPGAG" misc_feature complement(180201..181064) /locus_tag="Alide2_0162" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(180879..181049) /locus_tag="Alide2_0162" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(180213..180791) /locus_tag="Alide2_0162" /note="HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432" /db_xref="CDD:176123" misc_feature complement(order(180690..180710,180714..180767, 180771..180791)) /locus_tag="Alide2_0162" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176123" misc_feature complement(order(180348..180350,180408..180416, 180765..180767,180771..180776)) /locus_tag="Alide2_0162" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176123" gene 181189..182172 /locus_tag="Alide2_0163" /db_xref="GeneID:10481179" CDS 181189..182172 /locus_tag="Alide2_0163" /inference="similar to AA sequence:KEGG:Aave_3678" /note="KEGG: aav:Aave_3678 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386117.1" /db_xref="GI:330822814" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481179" /translation="MPINRREFVGLAAAGSLAPWVHAHAADAYPSKPITLVVPFTPGG SVDNSGRLMADRLSRELGVPVIVDNKGGAGGALGSAFVAKAKPDGYTLVVASQSTHVV NPAVNPNLPYDAVKDFAPITLIDRLANVLLVNASVPVQTFADLVKYAQANPGKLNYAS AGVGSVSHLSMELLKTQARIHVTHIPYRGAGVALTDLLAGQVQLAWNNLSSNLPNIRN GKLRALAVAAPQRVPQLPNVPTFAELKLPDLNLTSWTGLAAPAHTPDVIIGRLYSAVR KVLQDPATQATWVERGMMVPEDVKPQAYQAEIVERIKFYQRIAKANNIVIE" sig_peptide 181189..181266 /locus_tag="Alide2_0163" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.890 at residue 26" misc_feature 181210..182163 /locus_tag="Alide2_0163" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 181336..182160 /locus_tag="Alide2_0163" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 182169..183368 /locus_tag="Alide2_0164" /db_xref="GeneID:10481180" CDS 182169..183368 /locus_tag="Alide2_0164" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: aav:Aave_3677 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004386118.1" /db_xref="GI:330822815" /db_xref="GO:0016787" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="GeneID:10481180" /translation="MSAAPDRRAAYARIDQLLPYEQELVAIRRHLHQNPELAFAEHGT ADFVAGRLQEWGYEVARGIGGTGVVGTLRQGDGSRRLGIRADMDALPIQEATGAAHAS RAPGLMHACGHDGHMAMLLGAAKYLARQRNFSGTLHLIFQPAEERGFDSGGKAMVDDG LFERFPCDAVYAMHNHPGVPQGRFLLRSGAFMAAGDRVFIKVLGVGGHAARPHLAADP LVAAAAIVTGLQTVVARNVDPAESAVVTVGRLRAGDALNVIPADAEIGLSVRSFAPQV RALLKERITALATGIAQAHGTRAEIDYVEGYPVLVNDPEAVALAAQVATDLVGADAVD LEHPRLMGSEDFAYMLQRCPGALVRIGNGPADGGRGLHNPKYDFNDCNLPYGAAFWSQ LAQRFLC" misc_feature 182205..183362 /locus_tag="Alide2_0164" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature 182232..183356 /locus_tag="Alide2_0164" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature order(182499..182501,182505..182507,182604..182606, 182688..182690,183282..183284) /locus_tag="Alide2_0164" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature order(182757..182759,182823..182828,182838..182840, 182847..182849,182856..182858,182907..182927, 182937..182942,182946..182948,182964..182972) /locus_tag="Alide2_0164" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene 183548..184528 /locus_tag="Alide2_0165" /db_xref="GeneID:10481181" CDS 183548..184528 /locus_tag="Alide2_0165" /inference="similar to AA sequence:KEGG:Ajs_0125" /note="KEGG: ajs:Ajs_0125 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386119.1" /db_xref="GI:330822816" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481181" /translation="MLTPTRRLALAALAITPSLLAALPAAAQDAQPVRLIVGYAAGGP VDQGARLFGQALSKELGMPVMVENKPGANATIAGNEVVRAKPDGLTLWFAASPTITIS PNVMTKMPFDPAKDLAPVAPILSYYNVLVVNNNEPYKNVRELVAYAKANPGKLAYGSA GVGGSNHLGALLFARRSGIEMNHIPYKGNAPAMTDVIGGQLNMMLDIISTASSYIHSG KVRAIAVTSPQRNASLPDVPTFAESGIEGLKGFDVGGWYGVYGPKGMAPELVAKLNKA TNAALAQPDLKKRYKDLGYDEWTGNPQKLAERAAKERAMWATVTQGITVD" sig_peptide 183548..183631 /locus_tag="Alide2_0165" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 28" misc_feature 183692..184510 /locus_tag="Alide2_0165" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 184530..186038 /locus_tag="Alide2_0166" /db_xref="GeneID:10481182" CDS 184530..186038 /locus_tag="Alide2_0166" /EC_number="6.2.1.26" /inference="protein motif:PRIAM:6.2.1.26" /note="KEGG: dac:Daci_0186 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="YP_004386120.1" /db_xref="GI:330822817" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10481182" /translation="MAQRIHQLLDRWLAEAPGQPFIHLPDGRSLSFADLGALTDAAEA ELRALGVRAGDRVLVVAENCPEHAALILACSRVGAWSCGVNARMAPGEVDAFAAKADA RVLYFTASSSRSAAAHAARHAAVASVLPGMQHGAARDEATVEPPPLQDDVAALIFTSG TTGAPKGVMVTHEALIHFARVSAASRGLGPQDRCYAFVPMTHIFGLATVLLTSLHAGA QLVLRPQFDPEDLLDALAHHGVTQLQGPPALFSRLLAHLRERSIAHPEAPLLRYVYTG AGPLDLTLKQRVEAAFGQALHHGYGLSEYAGSVHLTRLSEQRPDTSVGYVVQDAEVQV TDPASGRPVPTGERGELWIRGRGLMRGYFRDPQATNAVMRDGGWYASGDLGELHADGA LFVVGRLKEMIIRSGFNVYPAEVELALNQLPGVQRSAVVGRPEKDGNEEVIAFVELSA GATFDEAAARARLREQLAPYKQPSHIVTVAELPTSHNGKVLKRRLQEQAAKL" misc_feature 184539..186032 /locus_tag="Alide2_0166" /note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: CaiC; COG0318" /db_xref="CDD:30666" misc_feature 184665..186023 /locus_tag="Alide2_0166" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 186056..187039 /locus_tag="Alide2_0167" /db_xref="GeneID:10481183" CDS 186056..187039 /locus_tag="Alide2_0167" /inference="similar to AA sequence:KEGG:100497979" /note="KEGG: xtr:100497979 hypothetical protein LOC100497979" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386121.1" /db_xref="GI:330822818" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481183" /translation="MPIHMTRRSLVAGGLLAAAAQPFAALASDAWPTKPVRFIVPFPP GGPVDTTARAASVKLSEIWKTPTVIDNRAGAGGVVGAQAAAREAPDGYTLFMGAIHHS VNPTLMGNLPYDIERDFAPISFAAMFPVFIVAHQSVPANTLKELIALARKPGSNLSYG SSGNGGGTHLAGELFNMEAGTKLQHVPYKGSAPAMNDLLGGQVQLMFSDAPTALPHIK SGRIKVLAVASRQRSAMLPDVPTAAEAGLPGYEAYSWAALFAPAKTPQAVLDKINADF NTAFRDPAVRQRLLDAGAEAAPGTQQEMRQFLRSELAKWAKVIKTAGITAG" sig_peptide 186056..186139 /locus_tag="Alide2_0167" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 at residue 28" misc_feature 186146..187027 /locus_tag="Alide2_0167" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 186209..187027 /locus_tag="Alide2_0167" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(187094..188095) /locus_tag="Alide2_0168" /db_xref="GeneID:10481184" CDS complement(187094..188095) /locus_tag="Alide2_0168" /inference="similar to AA sequence:KEGG:H16_B1474" /note="KEGG: reh:H16_B1474 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004386122.1" /db_xref="GI:330822819" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481184" /translation="MRTFTRRHFLQSAGATCTLAGLPAWAADAFPAKPLTLVVPYPAG GASDASARIFAESFTQSLNQQVIVENYGGGTGLIGANKVLSAPADGYTFLHGSPNEVI LPPMLNPAARYKPWDFVFAAPITTASIVLLVRNGIPVGTMDEFLDYARQQKDKPLTYA SVGIDSLYHLMGDALATRLNLPFLHVPYKGAAPALQDLAGGQVDFGILPYQTSFDGMQ AQGRLKVISSFSKDMAPGLKHIAPITQSKQIPDFVHEIGGGYFMRKGTPADRVAALRK AIGEAVVKPEIRSRLEAEGRKVAQPTETQAQADAAFKEMTDRIAALLKVLGRKNLAL" sig_peptide complement(188015..188095) /locus_tag="Alide2_0168" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 27" misc_feature complement(187115..188080) /locus_tag="Alide2_0168" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(187115..187945) /locus_tag="Alide2_0168" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(188116..189297) /locus_tag="Alide2_0169" /db_xref="GeneID:10481185" CDS complement(188116..189297) /locus_tag="Alide2_0169" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="PFAM: Peptidase M20; Peptidase M20, dimerisation; manually curated; KEGG: reu:Reut_B4300 peptidase M20D, amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004386123.1" /db_xref="GI:330822820" /db_xref="GO:0016787" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="GeneID:10481185" /translation="MDPSVSTALLHAMRALSPEFIAIRRDLHAHPELAFEERRTSDLV AERLAAWGYQVHRGLGGTGVVGTLRKGGGSRSLGIRADMDALPIQEKTGLDYASRHVG KMHACGHDGHTAILLCAARYLAESADFSGTLHLIFQPAEENEGGALRMVDEGLFTLFP CDEVYALHNSPGLPVGQMAISPGPLMASFDRATVTLRGRGAHGAMPHHGIDPMQCAAS IMLGLQSIVSREIDALKSAVITVGSIQAGEAYNVVPESAQLKIGVRTLDPRVRTLVEQ RIREFIAAQAQSYQLQAEVVYERKYPVLVNHAVQTEVLRQAAMRLVGADSVVERPPVM GSEDFAYMLEHRPGAYIRLGNGTGEDGGCNVHNPLYDFNDNALPIGAALWVHLAQSSL V" misc_feature complement(188131..189264) /locus_tag="Alide2_0169" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature complement(188131..189246) /locus_tag="Alide2_0169" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature complement(order(188200..188202,188794..188796, 188872..188874,188971..188973,188977..188979)) /locus_tag="Alide2_0169" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature complement(order(188512..188520,188536..188538, 188542..188547,188557..188577,188626..188628, 188635..188637,188644..188646,188656..188661, 188725..188727)) /locus_tag="Alide2_0169" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene 189562..189981 /locus_tag="Alide2_0170" /db_xref="GeneID:10481186" CDS 189562..189981 /locus_tag="Alide2_0170" /inference="protein motif:PFAM:PF01796" /note="PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: ajs:Ajs_0128 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386124.1" /db_xref="GI:330822821" /db_xref="InterPro:IPR002878" /db_xref="InterPro:IPR022002" /db_xref="GeneID:10481186" /translation="MLASDTTYQPLPMHLSAQTHYQAELDAGRFCIQRCPQCQNHVFT PRELCPHCGAGGLRWVRASGLGTVYSTSTIARKQDAGGNYNVALIDLDEGVRMMSRVE GLAPEGVAIGLRVQAHVAQKDGRGLVLFQPAAQGGAA" misc_feature 189634..189735 /locus_tag="Alide2_0170" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" misc_feature 189736..189912 /locus_tag="Alide2_0170" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene 189978..191186 /locus_tag="Alide2_0171" /db_xref="GeneID:10481187" CDS 189978..191186 /locus_tag="Alide2_0171" /inference="protein motif:PFAM:PF02803" /note="PFAM: Thiolase, C-terminal; KEGG: ajs:Ajs_0129 thiolase" /codon_start=1 /transl_table=11 /product="thiolase domain-containing protein" /protein_id="YP_004386125.1" /db_xref="GI:330822822" /db_xref="GO:0003700" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10481187" /translation="MSRIPRSHLDAAAVNRPLRGRVAIAGAATYGCGEAPGMDDMTLL VRAAQAAVADAGLSMQDIDGLATCSVNASMWPMPVIEHLGINPTYVDGTMIGGSSFIA HLLPAIRALEAGQCKAVLVCYGSAQRSATFGRKESQAARRFLDPQPYEFPYEPVLPVT AYALAAARHMHEFGTTRTQLAEVAVAARAWAQQNPEAFMRDPLTIEDVLAARPIASPL TVRDCCLVTDGGGAIVLTRAERARDLPRPPVYVLGNATAIWNRQISCMPDLTTTSASQ SGAQAFAMAGLKAADMDMAQVYDAFTINTILFLEDLGFCAKGEGGAFVENGGIAPGGR LAVNTNGGGLSCVHPGMYGIFALIEAVRQLRGEAGARQLKRHSTAVVHGNGGTLSSQS TAVLGTTETL" misc_feature 190014..191183 /locus_tag="Alide2_0171" /note="thiolase; Provisional; Region: PRK06158" /db_xref="CDD:180434" misc_feature 190050..191162 /locus_tag="Alide2_0171" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature order(190266..190268,190869..190871,191019..191021) /locus_tag="Alide2_0171" /note="active site" /db_xref="CDD:29416" gene 191206..192363 /locus_tag="Alide2_0172" /db_xref="GeneID:10481188" CDS 191206..192363 /locus_tag="Alide2_0172" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: dia:Dtpsy_0148 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004386126.1" /db_xref="GI:330822823" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481188" /translation="MIRDPEILEALLDSVRRFVRERLVPAENEVAETDEIPETIVQEM RELGLFGMTIPEKFGGLELTMEEECRVLLELCQTAPAFRSVIGTTVGIGSQGILMDGT PEQQAQWLPKLATGEVIASFALTEPEAGSDAASLRTTAILQGDHYVVNGTKRFITNAP HAGMFTLMARTNPQDKGAGGVSSFIVDAKSPGISFGKYDKKMGQRGAHTCDVIFDNVK VPAANLIGLKEGQGFKTAMKVLEKGRIHIAAVAVGVAKRILRDALAYALERKQFGQPI CEFQLVQAMLADSQAELYAAECMTIDAARRRDDGHNVSTEASCAKMFATEMCGRVADR AVQILGGAGYMAEYGIERFYRDVRLFRLYEGTTQIQQIIIARNMVRAARAA" misc_feature 191218..192357 /locus_tag="Alide2_0172" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 191221..192345 /locus_tag="Alide2_0172" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(191479..191481,191569..191571,191575..191577, 191668..191670,191674..191676,192289..192297, 192301..192303,192307..192309) /locus_tag="Alide2_0172" /note="active site" /db_xref="CDD:173838" gene 192360..192791 /locus_tag="Alide2_0173" /db_xref="GeneID:10481189" CDS 192360..192791 /locus_tag="Alide2_0173" /inference="protein motif:TFAM:TIGR00369" /note="KEGG: dac:Daci_0175 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily" /codon_start=1 /transl_table=11 /product="phenylacetic acid degradation-like protein" /protein_id="YP_004386127.1" /db_xref="GI:330822824" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10481189" /translation="MSEAGLPPDRNAFMRLIGAAQVPAPPGKVHMRLPHMREELLNQL PAAHGGVVMTLLDSVMARAAAELPTAPSRTAVTVEMSSRFHRPARGALLAEGWVVHAS RSLCSCAAQLLDADGRLVATASGTFKYWLGKTSAGHPPSGG" misc_feature 192405..192743 /locus_tag="Alide2_0173" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(192498..192500,192588..192590,192609..192620) /locus_tag="Alide2_0173" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(192501..192503,192507..192509,192516..192518, 192591..192605,192609..192611) /locus_tag="Alide2_0173" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(192504..192506,192528..192533,192540..192545, 192588..192590) /locus_tag="Alide2_0173" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(192788..193537) /locus_tag="Alide2_0174" /db_xref="GeneID:10481190" CDS complement(192788..193537) /locus_tag="Alide2_0174" /inference="protein motif:PFAM:PF09339" /note="KEGG: vei:Veis_2216 regulatory proteins, IclR; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004386128.1" /db_xref="GI:330822825" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="GeneID:10481190" /translation="MPPSHPVNGAQSVERACALLRRIAAGHAEGVPLRRLVDDTGLDR TTAWRLVSSLAAQGLVHKDEATGLYHLGLEAAALGAACMDRSPLVRACLPAMKALARL SGDNVFLVVRSGDHSHCLHLEEGEHRVRSFALNVGGTRLLGQGVGSIALLARLGDDAL VAHYRRHEAEYQADDVGLARLRRWAVQTRDCGHSYGSSGGVAGIGLGFRVGSCADAAL SVIAPRSRLPRSRGAELALAMRREMGAWRLL" misc_feature complement(192812..193507) /locus_tag="Alide2_0174" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(193235..193507) /locus_tag="Alide2_0174" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 193668..194654 /locus_tag="Alide2_0175" /db_xref="GeneID:10481191" CDS 193668..194654 /locus_tag="Alide2_0175" /inference="similar to AA sequence:KEGG:Veis_2212" /note="KEGG: vei:Veis_2212 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386129.1" /db_xref="GI:330822826" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481191" /translation="MTANIDRRHLVQGLAAATALTALGARAQATPFPSRPVTLVVPFP AGGATDSLVRQIAELAGRELGQPVVVENKPGAAGVLGANHVVRAAPDGYTLSVLPEPV FRLPHLQKTAFDPMNDFSYVIHLSGYALGIAVRNDAPWRDWAGVVAEAKKRPGQISYG TTGINGTMHVTVEEMAQRAGVRLNHVPYKGESEIIAALMGGHIDLGVTAGGIAPMVDD GRARVLVLWTARRAPRWPGVPTLREIGIDMVANSPFGIAGPKGLPPAVVKTLHDAFRK ALEAPATRATLERLNQESAYLDSEAYAAFARERYETSRQQVQRLGLKPNAQQ" sig_peptide 193668..193751 /locus_tag="Alide2_0175" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.740 at residue 28" misc_feature 193761..194633 /locus_tag="Alide2_0175" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 193827..194564 /locus_tag="Alide2_0175" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 194651..195511 /locus_tag="Alide2_0176" /db_xref="GeneID:10481192" CDS 194651..195511 /locus_tag="Alide2_0176" /EC_number="1.3.1.38" /inference="protein motif:PRIAM:1.3.1.38" /note="KEGG: vei:Veis_2211 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="trans-2-enoyl-CoA reductase (NADPH)" /protein_id="YP_004386130.1" /db_xref="GI:330822827" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481192" /translation="MNYRSIYRPGLFAGQVIAITGGGSGIGRCTAHELASLGASLALI GRNADKLQAVAGEIGQPDRVSTHACDIRDEEAVRATVAAIVARHGRIDGLFNNAGGQF PAPLRDISQKGWEAVVRNNLTGGFVMARECFTQWMEAHGGSVVNVIADMWNGMPGMGH SGAARAGMLNFTETAACEWAASGVRVNAVAPGWIASSGLDTYPDAFKARIQTLARKVP LQRLGTEAEVSAAVVFLLSAAAAFVTGTTLRVDGGVPNAKHTWALPAHANSQPYDGFP LYQKPGFLES" misc_feature 194681..195412 /locus_tag="Alide2_0176" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 194684..195409 /locus_tag="Alide2_0176" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(194711..194713,194717..194722,194726..194728, 194783..194791,194939..194947,195089..195097, 195131..195133,195143..195145,195221..195232) /locus_tag="Alide2_0176" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(195011..195013,195095..195097,195131..195133, 195143..195145) /locus_tag="Alide2_0176" /note="active site" /db_xref="CDD:187535" gene 195511..196659 /locus_tag="Alide2_0177" /db_xref="GeneID:10481193" CDS 195511..196659 /locus_tag="Alide2_0177" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004386131.1" /db_xref="GI:330822828" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481193" /translation="MLQAPNPRHYTAEHETLRATVRRFFEKEVAPHVSAWDEAGGFPR DLYRKAAEAGLLQLGFPEAYGGVECDAFHRMILFEERAWGGSGGVASGLFSHTIGAPP IAVAGSEALKARVLPGILAGEQISALAITEPGGGSDVAQLATTARRDGGHYVVNGSKL FITSGMRADWFTVAVRTGGPGAAGVSLLLVPGDTPGLTRSPLQKMGWWASDTAEIGFT DCRVPVENLLGDEGQGFAILMRNFNHERLALAAAACGYAQVCLHDAVAWARERRTFGQ PLSERQVIRHRLVDMATRIEATRALLDDLASRLDAGESPAAQIAMAKNFATRTFQFCA DAAVQILGGMGFMRGTRVERLYREVKVMMIGGGAEEVMKDLIAKRLGL" misc_feature 195538..196656 /locus_tag="Alide2_0177" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 195544..196653 /locus_tag="Alide2_0177" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(195802..195804,195892..195894,195898..195900, 195991..195993,195997..195999,196597..196605, 196609..196611,196615..196617) /locus_tag="Alide2_0177" /note="active site" /db_xref="CDD:173838" gene 196709..198328 /locus_tag="Alide2_0178" /db_xref="GeneID:10481194" CDS 196709..198328 /locus_tag="Alide2_0178" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4" /note="KEGG: axy:AXYL_05145 methylcrotonoyl-CoA carboxylase subunit beta; PFAM: Carboxyl transferase" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase" /protein_id="YP_004386132.1" /db_xref="GI:330822829" /db_xref="InterPro:IPR000022" /db_xref="GeneID:10481194" /translation="MIPFASHIHPASEDFQSQRAGMLGLVGQLRALEQRAADASARAA SSFAKRGALLPRERVARLLDPGMPFLPLCNLAGYGMDDPDPERCIPGGSQIAGIGFVS GVRCMVVATDSGIDAGALTEAGNQKLMRCQDIALENRLPFVHLVESAGSNLRKYRVDK FIRGGGMFYNLARLSASGLPVVTVVHGSSTAGGAYMPGLSDYVVMVRGRAKAFLAGPP LLKAATGEVATDEELGGTAMHASVSGLAEYVAEDDAHAIALARDILATLDWNDGMPAP GPDAEPPHLDPDELAGVMVLEHRKPVDMREVIARLVDGSRWMDFKPDYGAATVCGHGR IEGHAVGFVSNNGPIDPAGATKAAQFIQLCNQSGTPLVFLQNTTGFIVGRTSEEAGMI KHGSKMIQALANSRVPQITIHCGASFGAGNYGMCGRAFRPRFCFSWPNARTAVMGGEQ AATTLEIVARQQAERKGAPVDEDRLAAQKAEIVANFSAQASAFYTSGHLLDDGVIDPR DTRAVLAFVLATAREAEARQPRAVQFGVARF" misc_feature 196742..198325 /locus_tag="Alide2_0178" /note="3-methylcrotonyl-CoA carboxylase, beta chain; Region: PLN02820" /db_xref="CDD:178415" misc_feature <196991..>197323 /locus_tag="Alide2_0178" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" misc_feature <197651..>197986 /locus_tag="Alide2_0178" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 198339..199502 /locus_tag="Alide2_0179" /db_xref="GeneID:10481195" CDS 198339..199502 /locus_tag="Alide2_0179" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: reu:Reut_B4462 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004386133.1" /db_xref="GI:330822830" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481195" /translation="MLYTPEHHELMASIRRFIAAEIDPFVDEWEANEIFPAHELFKKM GRLGFLGITKPEAYGGMGLDFSYALAAAEAIGHARAQGVGMGIGVQSNMATPALAAFG SDELKREFLAPAIAGDVVVSIGVSEQGAGSDVSSLKTRARRDGDDYVISGSKMWITNG TQADWICLLCNTSDGPVHKNKSLIVVPLKENGKRAKGVEVQKIKKFGMWSSDTAQIFF DEVRVPVRHRIGEEGMGFIYQMKQFQEERLDGAARRLASIDLINETADYLRQRIAFGR PLLDNQFIQYKLAELKTELEALRSLTYRATLAYVNGEDVIELASMAKLKAGRLGREIA DWCMQFQGGMGYTWDNRVSRAYRDYRLGSIGGGADEVMMMVIARKMGLMDMGA" misc_feature 198339..199487 /locus_tag="Alide2_0179" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 198351..199481 /locus_tag="Alide2_0179" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(198615..198617,198705..198707,198711..198713, 198804..198806,198810..198812,199425..199433, 199437..199439,199443..199445) /locus_tag="Alide2_0179" /note="active site" /db_xref="CDD:173838" gene 199504..200325 /locus_tag="Alide2_0180" /db_xref="GeneID:10481196" CDS 199504..200325 /locus_tag="Alide2_0180" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: vei:Veis_2207 enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004386134.1" /db_xref="GI:330822831" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10481196" /translation="MSSAPPVLLRREHDVLFATLNRPETRNALAPEVVAALMQAVAQA ESDAAVRALVLRGAGGFFCAGGNVGNFQARLDADAAGEDPVAARNREFGRFMQRLAAL PVPVIAVVEGAAMGGGMGLACAADLVLATQDAKFALSETSLGIIPAQIAPFVAARLGR RAALRLGLFGERVAGGAAQALGLVDELAFDGAALDALLAQWLTRLCACAPGANRALKP LLRRCGREDDGALLDDAARLFAACMRSEGAEGIAAFREKRPAAWRHEFTADAVRS" misc_feature 199522..>199944 /locus_tag="Alide2_0180" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature 199558..200292 /locus_tag="Alide2_0180" /note="enoyl-CoA hydratase; Provisional; Region: PRK07468" /db_xref="CDD:180987" misc_feature order(199579..199581,199585..199587,199681..199683, 199693..199707,199840..199842,199846..199854, 199918..199923,199930..199932) /locus_tag="Alide2_0180" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(199699..199701,199852..199854) /locus_tag="Alide2_0180" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" gene 200339..202333 /locus_tag="Alide2_0181" /db_xref="GeneID:10481197" CDS 200339..202333 /locus_tag="Alide2_0181" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4" /note="PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: reu:Reut_B4460 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase" /protein_id="YP_004386135.1" /db_xref="GI:330822832" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="GeneID:10481197" /translation="MTPCKQIRPFHTVLVANRGEIAIRIMCTARRLGYGTVAVYSEAD RDGPHVHAADRAVCIGGAAPRDSYLNIPALIDAARRAGADAVHPGYGFLAENADFADA VDAAGLVFIGPAGAAIRAMGNKAQAKRLVLAAGMPCIPGYQGADQGDAALLAAAADVG FPVMVKAAAGGGGRGMRLVPDAGALPQALASARSEAEVAFGSAELILERAVLAPRHVE IQVLADSHGHVIHLGERDCSVQRRHQKVIEEAPSPAVDAALRARMGEAAINAARAIGY IGAGTMEFLLDRDGRFYFMEMNTRLQVEHAVTEAITGLDLVEWQLRVAAGEPLALAQD DVRLDGHAIEVRLTAEDVPAGFLPQTGPVLRWRPPPQEGGVRVDHGLVEGGAVSPHYD SMVAKLVAHGRTRDEARRKLLRAVGQCVLLGLPSNQGFLADCLADPAFADGGAVHTGF VQERFGERLSERPQPPLRTLALAAFAALAGAMPHQEDGRIRPAVLGGQAARVGLAQGD ARWDAQLAAGGEGWQLAVQGGSFALRDAAWEDGARATLRVECDGITERIVVAPQGDAL HCFHAGRAWSFERVSERKRRGAEGGSGAVTAPLTGRIVDVAVRAGDAVQAGQRLLVLE AMKMEHTLTAPLAGVVAEVCAQAGGQSAKGALLLRIEEAA" misc_feature 200366..202324 /locus_tag="Alide2_0181" /note="Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]; Region: COG4770" /db_xref="CDD:34383" misc_feature 200366..200689 /locus_tag="Alide2_0181" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature 200708..201331 /locus_tag="Alide2_0181" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 201368..201691 /locus_tag="Alide2_0181" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" misc_feature 202118..202318 /locus_tag="Alide2_0181" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature order(202187..202189,202214..202222,202241..202243) /locus_tag="Alide2_0181" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature 202217..202219 /locus_tag="Alide2_0181" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene 202330..204144 /locus_tag="Alide2_0182" /db_xref="GeneID:10481198" CDS 202330..204144 /locus_tag="Alide2_0182" /inference="protein motif:PFAM:PF07287" /note="PFAM: Protein of unknown function DUF1446; KEGG: reu:Reut_B4459 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386136.1" /db_xref="GI:330822833" /db_xref="InterPro:IPR010839" /db_xref="GeneID:10481198" /translation="MKTKTVRIGGASGFWGDSAIATPQLLQVPGLQYLVYDYLAETTM SILARARAKDAALGYATDFVHAAMAPNLRAICERGVRVVANAGGLNPEACRDALAAVA AAQGLAPRIAVVTGDDLMPQFEQLRAAGLRDLHTGEAPPAALYSANAYVGARGIAQAL ALGADIVITGRCVDSAVVVGVLAHEFGWGWDDWDRIAAGTLAGHVIECGAQATGGLFT DWQQVPGWADMGYPVIDCAADGSFVLSKPEGTGGLIHPGAVAEQVLYEVGDPAHYLMP DVTCDFRQVHVEALDAGHVRVAGARGRPPTGSYKANGTWRDGYQLQLMMAIRGIDAPA KARKTADALLARTRALMREQGFADYTETCVELLGCEALYGPNARALPTREVVLRIGAR HADPKALAFLQRECASAGTSMGPGTRSSFAGRADVQPVIKVFSFLVPKDQVALQVVLG ERVEPVALPAAAPAVAAAPLPAPPAAAPVVHDGIDVPLVALAWARSGDKGDDENIGVI ARRPEFLPLLRAQLTPERVKAWFAHLVQGEVERFEVPGLQALNFVLHQALAGGGVASL RSDPLGKSFAQMLLDWPVRVPRRWADDGLLAPHHLLAD" misc_feature 202351..203433 /locus_tag="Alide2_0182" /note="Protein of unknown function (DUF1446); Region: DUF1446; pfam07287" /db_xref="CDD:191720" gene 204168..205148 /locus_tag="Alide2_0183" /db_xref="GeneID:10481199" CDS 204168..205148 /locus_tag="Alide2_0183" /inference="similar to AA sequence:KEGG:AXYL_05150" /note="KEGG: axy:AXYL_05150 extra-cytoplasmic solute receptor family protein 140" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor family protein" /protein_id="YP_004386137.1" /db_xref="GI:330822834" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481199" /translation="MQSMIRRNLLAIGLGALAFAATPAWAQDNYPSKPIRVVVPYTPG GVSDTVTRLVMQKLSDRLKTPVIVDNQGGANGQIGSAMVARSAPDGYTLLVVVAGHAI NPSLYAKMTYAPLTDLRGVSEFGAIPLLMVSSAALPPKDLKEFVAWAKANPTQATFAS SGTGSGAQLSAELFAQTAGVAMTHIPYKGMAPALPDLFSGQVAMAFDSVQTMMPQVRS GKLRALAMTSARRWPAAPEVPTMAEQGYPSLTGGSWIGLLAPAKVPGDIVRKLSSEMQ KVIDAPDVHAKLIEYGIDPVGGTPEQFDAFIQSEARRWADVVKKANIRLE" sig_peptide 204168..204248 /locus_tag="Alide2_0183" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 27" misc_feature 204231..205139 /locus_tag="Alide2_0183" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 204315..205136 /locus_tag="Alide2_0183" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 205156..206376 /locus_tag="Alide2_0184" /db_xref="GeneID:10481200" CDS 205156..206376 /locus_tag="Alide2_0184" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: vei:Veis_2206 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386138.1" /db_xref="GI:330822835" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481200" /translation="MASILEDVKVLDLTRVIAGPLCTQILADMGATVYKIEKPGEGDD TRRMGPFLPDAATGADSNDSALYLAYNRGKRSVTLDISTPEGAALARQLASRCDVVVE NYKAGSLAKYGLDEASIRALRPDIVYCSVTGFGQDGPYAARPAYDFILQGLAGVMSTC GHPDGAPGAGAMRTAIPITDVVTGLYATIGILGALHHRRETGQGQHVDAAMLDASVAL NGHLALGYLMTGKVPARVGNTNPIASPSEVFDCADGQLIVAVGNNGQFQALCGVLGCP QWAQDARFATNARRVAHRAELRDLLAPLLCGRARAELLAAFEQAGVPSGPINDMAQVF EDPQTRHRELAFTLPHGRGAEVPSLRNPIRYSQTPMRYRAAPMLGQDSEEVLAQVLGL GPDHLAYLRKRAII" misc_feature 205156..206373 /locus_tag="Alide2_0184" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(206422..207339) /locus_tag="Alide2_0185" /db_xref="GeneID:10481201" CDS complement(206422..207339) /locus_tag="Alide2_0185" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0150 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386139.1" /db_xref="GI:330822836" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481201" /translation="MAMHFDLVDLRLMVHIADANSMTRGAELSFISLPAASTRIKNLE ESIGTKLLYRTSQGVTLTPPGQAFVTHARMVLGQIEHLRGDMQEYVRGIKGHVRVFAN TTSLGEFLPPVLRHFLRRNPDVNIDLRERLSHDIVRAVTEGQTDIGIVAGLVRTENLE TLPYRRDRLVLVVPRGHPLDGQMQIDFSDTLELDYVGLHESSAIHAFLRQASDQLHRP IKQRIQVGNFETACRMIEAGVGVGVLPESAASRHAHAMDIAIVPLSDAWSVREMQICV RSLEALPSFAQELVELLVADAQGRLQLDR" misc_feature complement(206434..207327) /locus_tag="Alide2_0185" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(207142..207321) /locus_tag="Alide2_0185" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(206461..207054) /locus_tag="Alide2_0185" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(206629..206634,206638..206643, 206659..206676,206950..206970,206974..206976, 206986..206988,206995..207000,207004..207009)) /locus_tag="Alide2_0185" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 207449..208726 /locus_tag="Alide2_0186" /db_xref="GeneID:10481202" CDS 207449..208726 /locus_tag="Alide2_0186" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: dia:Dtpsy_0151 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386140.1" /db_xref="GI:330822837" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481202" /translation="MTAADTSSSAATGALSHLRVLDLSRVLAGPWCTQNLADMGADVI KIEKPGDGDDTRHWGPPFFPDAEGKPTSHACYFAACNRNKRSVTVDMATPEGQQLIRE LAMQSDVVVENFKTGGLKRYGLDYASLSALNPRLIYCSVTGFGHTGPYAPRAGYDLLI QAMSGLMSITGHADGEPGGGPMRVGVAVIDLFTGMYATTAILGALEARHRTGRGQHID MALLDVAMAILANQGAGFLNAGNVPKRQGNTHPSVVPYQDFPTQDGNMLLAIGNDGQF ARFCEVAGVDWASDERFTQNAGRVIHRDTLIPMMAALTRTRSTAEWVRLLEDKAVPCG PINHIGQAFDDEQVRARSLRIVQERYPGAQPPAGETVNRVVTTASPLRLSDTPVTLRH APPALGQHTDEVLRERLGLDAARLQELRAKGVL" misc_feature 207491..208723 /locus_tag="Alide2_0186" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(208778..209677) /locus_tag="Alide2_0187" /db_xref="GeneID:10481203" CDS complement(208778..209677) /locus_tag="Alide2_0187" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_0218 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386141.1" /db_xref="GI:330822838" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481203" /translation="MQFELKDLRLFLLVAQRGSLSRAAEQLHLSLAATSARVKALEER VGMPLLIREARGVRLSPPGEAFLFHARAILQQARQLQAELQEYGAGLRGHLRVFANTT AVTDFMPDILAAYLTAHPHISVDLEERPNARIAEDIREGRADLGIVAGEVDTHGLQSL HFSTDRLVLVTPPTPAWRAIQEIPFAQVLHENFVGMHRTSTLQTFLDGMGQQLGHTLK LRIQLASFDAMCRMVAAGVGIAVVPESGAMRYAQGAHVHQVQLMDSWAVRPRYMLVRT LQGLPAHAQALMAAVQAHHAARA" misc_feature complement(208835..209671) /locus_tag="Alide2_0187" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(209486..209665) /locus_tag="Alide2_0187" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(208835..209398) /locus_tag="Alide2_0187" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(208973..208978,208982..208987, 209003..209020,209294..209314,209318..209320, 209330..209332,209339..209344,209348..209353)) /locus_tag="Alide2_0187" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 209815..210828 /locus_tag="Alide2_0188" /db_xref="GeneID:10481204" CDS 209815..210828 /locus_tag="Alide2_0188" /inference="similar to AA sequence:KEGG:CtCNB1_0219" /note="KEGG: ctt:CtCNB1_0219 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="twin-arginine translocation pathway signal protein" /protein_id="YP_004386142.1" /db_xref="GI:330822839" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481204" /translation="MRRADFAIITRRALCAGAVLGWALTAAPGACAQGAYPSRPIVMV VPQAAGGTNDIVGRVVAQKLAEKLGGSAVVENKPGAGGNIGTQAVARAPKDGYTLLMT ISSSQAINPALYKAPGFDPVADFQPISLIGAVPNVLLAHPSFPAKTVPELLALAKSQP RTLQYASAGNGTLNHLLGEMLNQMAGIELQHVPYKGVAPALNDVLGGQLPLLFGSLPS TLAHIKAGRLRALAVSSPQRSPVLPDVPALAEFVPGYSGTLWIGLFAPAGVPNEALAR LQDGMRQAMADKELRDKLEAQGVELAGTANKPVTPNEFAALLKQDIAKWAQIVKTSGA TIN" sig_peptide 209815..209913 /locus_tag="Alide2_0188" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.960 at residue 33" misc_feature 209878..210813 /locus_tag="Alide2_0188" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 209980..210816 /locus_tag="Alide2_0188" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 210960..212150 /locus_tag="Alide2_0189" /db_xref="GeneID:10481205" CDS 210960..212150 /locus_tag="Alide2_0189" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386143.1" /db_xref="GI:330822840" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481205" /translation="MPRPLDGITVVSLEHAVAAPFCTRQLADLGARVIKVERPGSGDF ARGYDQRVRGQSSHFTWINRSKESLALDVKQPQAKAALMQLLKTADVLVQNLAPGAAA RMGLSYEALKEHNPRLIVCDISGYGADGPYRDKKAYDLLIQSEAGFLSVTGTPETPSK SGISVADIAAGMYAYSNILSALLLRARTGEGSHIDVSMLEAMGEWMGYPMYYAFDGAP PPPRTGASHASIYPYGPFTAGDGATVMLGLQNEREWKTFCDAVLQRPEVATDARFCSN AQRNQHRSELQALILEVFAALTAAQVVERLDAAAIANARVNDMAGLWAHPQLKARQRW RSVGTPAGEVPALLPPGVNSAFEYRMDAVPAVGQHTAAILAALGWTDGQIDEVITPSP SGEG" misc_feature 210960..212123 /locus_tag="Alide2_0189" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(212175..213467) /locus_tag="Alide2_0190" /db_xref="GeneID:10481206" CDS complement(212175..213467) /locus_tag="Alide2_0190" /EC_number="1.4.1.3" /inference="protein motif:PRIAM:1.4.1.3" /note="PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: dia:Dtpsy_0153 Glu/Leu/Phe/Val dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal" /codon_start=1 /transl_table=11 /product="glutamate dehydrogenase" /protein_id="YP_004386144.1" /db_xref="GI:330822841" /db_xref="InterPro:IPR006096" /db_xref="InterPro:IPR006097" /db_xref="GeneID:10481206" /translation="MTSPSGTHPLPSYLDPNHLGPWGVYLQQVDRVTPYLGNLARWVE TLKRPKRALIVDVPIELDNGTIAHFEGYRVQHNVSRGPGKGGVRFHQDVTLSEVMALS AWMSIKNAAVNVPYGGAKGGIRVDPKTLSRGELERLTRRYTSEIGIIIGPSKDIPAPD VNTNAQVMAWMMDTYSMNVGTTATGVVTGKPVDLGGSLGRVEATGRGVFTVGVEAARL TGMPIEGARVAVQGFGNVGGTAGRLFSEAGAKVVAVQDHTGTIHNDKGLDVPALLAHV QQTGGVAGFAGAEPMADDAFWGVACDILIPAALESQITKDNAGRIQARMVIEGANGPT TPEADDILHDKGVLVLPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINARLVRIMKEA FAGVWNVAQENKVSLRTATFIVACKRILHAREMRGLYP" misc_feature complement(212181..213413) /locus_tag="Alide2_0190" /note="Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Region: GdhA; COG0334" /db_xref="CDD:30682" misc_feature complement(212937..213323) /locus_tag="Alide2_0190" /note="Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Region: ELFV_dehydrog_N; pfam02812" /db_xref="CDD:190436" misc_feature complement(212211..212885) /locus_tag="Alide2_0190" /note="NAD(P) binding domain of glutamate dehydrogenase, subgroup 1; Region: NAD_bind_1_Glu_DH; cd01076" /db_xref="CDD:133445" misc_feature complement(order(212475..212483,212541..212546, 212697..212702,212760..212768)) /locus_tag="Alide2_0190" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133445" gene 213654..214103 /locus_tag="Alide2_0191" /db_xref="GeneID:10481207" CDS 213654..214103 /locus_tag="Alide2_0191" /inference="protein motif:PFAM:PF05232" /note="PFAM: Transmembrane pair, bacterial; KEGG: dia:Dtpsy_0156 transmembrane pair domain protein" /codon_start=1 /transl_table=11 /product="transmembrane pair domain-containing protein" /protein_id="YP_004386145.1" /db_xref="GI:330822842" /db_xref="InterPro:IPR007896" /db_xref="GeneID:10481207" /translation="MNATRTARGLQGPWRRLVFVSLYELIAILASSLLFMAIGQGAGA SGAMAVVASTLAIVWNVTFNHLFEKWEARQSVKGRSAMRRVVHAMGFEGGLALALIPL MAWWFGVSLWEATLMEAGLLLFFLVYTYLFNWAFDRIFGLPASAQPA" sig_peptide 213654..213803 /locus_tag="Alide2_0191" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.858) with cleavage site probability 0.648 at residue 50" misc_feature 213681..214100 /locus_tag="Alide2_0191" /note="Predicted membrane protein [Function unknown]; Region: COG4125" /db_xref="CDD:33882" misc_feature 213684..213884 /locus_tag="Alide2_0191" /note="Bacterial Transmembrane Pair family; Region: BTP; pfam05232" /db_xref="CDD:191238" misc_feature 213888..214091 /locus_tag="Alide2_0191" /note="Bacterial Transmembrane Pair family; Region: BTP; pfam05232" /db_xref="CDD:191238" gene 214150..215085 /locus_tag="Alide2_0192" /db_xref="GeneID:10481208" CDS 214150..215085 /locus_tag="Alide2_0192" /inference="protein motif:PFAM:PF06977" /note="PFAM: SdiA-regulated; KEGG: psa:PST_0402 hypothetical protein" /codon_start=1 /transl_table=11 /product="SdiA-regulated domain-containing protein" /protein_id="YP_004386146.1" /db_xref="GI:330822843" /db_xref="InterPro:IPR009722" /db_xref="GeneID:10481208" /translation="MTNAMPLAQTSSRMPRCALLAALVVGAALGVYFQLPAMTYYWGQ SLRQEAQLRPVSLWLPAYQATIQGRPLRGVEKNLSGLTFNNGTGTLFASTNSPAQIVE LSVEGEVLRIIRVSGAQDTEGIAHVEGGRFMLSGGRHNALYAVDIGPDSREVQARELV RLPLDTLHSNLGVETVSWDESAQRLLVGQEKWPLRLLSLRGNPRVEPIWLRQDWGALF INDLASVTTHAPTGNLLLLSEESAMVVEYDPRGMPVSLLPLWRGLHGLARKIPQPEGL ALAPDGSLFIVSEPNLFYRFEKPRAAARPGTLAGE" misc_feature 214333..215040 /locus_tag="Alide2_0192" /note="SdiA-regulated; Region: SdiA-regulated; cd09971" /db_xref="CDD:197380" misc_feature order(214384..214386,214432..214434,214507..214509, 214513..214515,214669..214671,214816..214818, 214969..214971,215014..215016) /locus_tag="Alide2_0192" /note="putative active site [active]" /db_xref="CDD:197380" gene 215213..217948 /locus_tag="Alide2_0193" /db_xref="GeneID:10481209" CDS 215213..217948 /locus_tag="Alide2_0193" /EC_number="2.1.1.13" /inference="protein motif:TFAM:TIGR02082" /note="TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: dac:Daci_0232 methionine synthase; PFAM: Vitamin B12-dependent methionine synthase, activation domain; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Pterin-binding" /codon_start=1 /transl_table=11 /product="methionine synthase" /protein_id="YP_004386147.1" /db_xref="GI:330822844" /db_xref="GO:0008270" /db_xref="GO:0008705" /db_xref="GO:0031419" /db_xref="InterPro:IPR000489" /db_xref="InterPro:IPR003759" /db_xref="InterPro:IPR004223" /db_xref="InterPro:IPR006158" /db_xref="InterPro:IPR011822" /db_xref="GeneID:10481209" /translation="MSAVTPPPMKLSGLEPVFIGEGSLFVNVGERTNVTGSKAFARMI LGEQYEQALSVARQQVENGAQVIDVNMDEAMLDSKAAMVRFLNLIASEPDIAKVPVMV DSSKWEVIEAGLRCLQGKGIVNSISMKEGVEEFKRQAKLIKRYGAAAVVMAFDEQGQA DTFARKTEICQRAYRILVDEVGFAPEDIIFDPNIFAIATGIEEHANYAVDFIEATRWI KQHLPGAKVSGGVSNVSFSFRGNDPVREAIHTVFLYHAIKAGMDMGIVNAGMVGVYDD LDPELRARVEDVVLNRRPDAAERLLEIAEAAKGAAKDDSKKLEWRGTPDNPRPVGERL AHALVHGITDFIVADTEEAYQQIVVQGGGRPLHVIEGPLMDGMNIVGDLFGAGKMFLP QVVKSARVMKQAVAHLIPYIEEEKRQQEAAGLDVSSKGKIVVATVKGDVHDIGKNIVT VVLQCNNFEVINMGVMVPCHEILARAKAEGADIVGLSGLITPSLEEMQYVAGEMHKDD YFRIKKIPLLIGGATCSRVHTAVKIAPQYEGPVVYVPDASRSVSVAQSLLGEGKDAYL AEVQADYDHVRELHAKKKKVPLWPIEKARANAARLDYVPVVPRALGRRVFRNFDLAEI AKYLDWGPFFQTWDLAGAFPAILDDDVVGEEARKVYADGQAMLKKIIEGRWLQANGVI GLFPANRVGDDIEFYTDETRTQVLMTWYGLRQQTEKQVDAEGRLRPSRSLADFVAPKE SGIADYAGMFAVTAGIGAEKKEKEFLDALDDYSNILFKGLADRLAEAFAECLHERVRK DLWGYGADESLSNEDLIKEKYQGIRPAPGYPACPDHTAKIALFDTLQAREIGMDLTES MAMFPASSVSGFYLAHPQATYFVVGQIGDDQVQDMAARRGMDVEELRRRLAPNLG" misc_feature 215222..217852 /locus_tag="Alide2_0193" /note="Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]; Region: MetH; COG1410" /db_xref="CDD:31600" misc_feature 215285..216055 /locus_tag="Alide2_0193" /note="MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent...; Region: MeTr; cd00740" /db_xref="CDD:29546" misc_feature order(215309..215311,215519..215521,215582..215584, 215588..215590,215666..215668,215783..215785, 215900..215902,215912..215914,216005..216007, 216011..216013) /locus_tag="Alide2_0193" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29546" misc_feature 216200..216886 /locus_tag="Alide2_0193" /note="B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy); Region: methionine_synthase_B12_BD; cd02069" /db_xref="CDD:30207" misc_feature order(216320..216322,216332..216334,216383..216385, 216392..216394,216527..216547,216554..216556, 216665..216673,216677..216685,216776..216778, 216842..216844,216851..216853,216860..216862) /locus_tag="Alide2_0193" /note="B12 binding site [chemical binding]; other site" /db_xref="CDD:30207" misc_feature 216536..216538 /locus_tag="Alide2_0193" /note="cobalt ligand [ion binding]; other site" /db_xref="CDD:30207" misc_feature 217442..217852 /locus_tag="Alide2_0193" /note="Vitamin B12 dependent methionine synthase, activation domain; Region: Met_synt_B12; pfam02965" /db_xref="CDD:111813" gene 218107..221196 /locus_tag="Alide2_0194" /db_xref="GeneID:10481210" CDS 218107..221196 /locus_tag="Alide2_0194" /inference="protein motif:TFAM:TIGR01865" /note="TIGRFAM: CRISPR-associated protein, SAG0894; KEGG: vei:Veis_1230 CRISPR-associated endonuclease Csn1 family protein" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein, Csn1 family" /protein_id="YP_004386148.1" /db_xref="GI:330822845" /db_xref="InterPro:IPR010145" /db_xref="GeneID:10481210" /translation="MRSLRYRLALDLGSTSLGWALFRLDACNRPTAVIKAGVRIFSDG RNPKDGSSLAVTRRAARAMRRRRDRLLKRKTRMQAKLVEHGFFPADAGKRKALEQLNP YALRAKGLQEALLPGEFARALFHINQRRGFKSNRKTDKKDNDSGVLKKAIGQLRQQMA EQGSRTVGEYLWTRLQQGQGVRARYREKPYTTEEGKKRIDKSYDLYIDRAMIEQEFDA LWAAQAAFNPTLFHEAARADLKDTLLHQRPLRPVKPGRCTLLPEEERAPLALPSTQRF RIHQEVNHLRLLDENLREVALTLAQRDAVVTALETKAKLSFEQIRKLLKLSGSVQFNL EDAKRTELKGNATSAALARKELFGAAWSGFDEALQDEIVWQLVTEEGEGALIAWLQTH TGVDEARAQAIVDVSLPEGYGNLSRKALARIVPALRAAVITYDKAVQAAGFDHHSQLG FEYDASEVEDLVHPETGEIRSVFKQLPYYGKALQRHVAFGSGKPEDPDEKRYGKIANP TVHIGLNQVRMVVNALIRRYGRPTEVVIELARDLKQSREQKVEAQRRQADNQRRNARI RRSIAEVLGIGEERVRGSDIQKWICWEELSFDAADRRCPYSGVQISAAMLLSDEVEVE HILPFSKTLDDSLNNRTVAMRQANRIKRNRTPWDARAEFEAQGWSYEDILQRAERMPL RKRYRFAPDGYERWLGDDKDFLARALNDTRYLSRVAAEYLRLVCPGTRVIPGQLTALL RGKFGLNDVLGLDGEKNRNDHRHHAVDACVIGVTDQGLMQRFATASAQARGDGLTRLV DGMPMPWPTYRDHVERAVRHIWVSHRPDHGFEGAMMEETSYGIRKDGSIKQRRKADGS AGREISNLIRIHEATQPLRHGVSADGQPLAYKGYVGGSNYCIEITVNDKGKWEGEVIS TFRAYGVVRAGGMGRLRNPHEGQNGRKLIMRLVIGDSVRLEVDGAERTMRIVKISGSN GQIFMAPIHEANVDARNTDKQDAFTYTSKYAGSLQKAKTRRVTISPIGEVRDPGFKG" misc_feature 218122..220452 /locus_tag="Alide2_0194" /note="HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins...; Region: HNHc; cl00083" /db_xref="CDD:193649" misc_feature 218122..220452 /locus_tag="Alide2_0194" /note="CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI; Region: cas_Csn1; TIGR01865" /db_xref="CDD:162567" gene 221202..222131 /locus_tag="Alide2_0195" /db_xref="GeneID:10481211" CDS 221202..222131 /locus_tag="Alide2_0195" /inference="protein motif:TFAM:TIGR03639" /note="KEGG: vei:Veis_1231 CRISPR-associated Cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1, NMENI subtype; CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas1" /protein_id="YP_004386149.1" /db_xref="GI:330822846" /db_xref="InterPro:IPR002729" /db_xref="InterPro:IPR019855" /db_xref="GeneID:10481211" /translation="MIGRIVEIADDRRHLFVNRGFLVVRDTEGERKELGQVPLDDIAA VIANAHGLTYTNNLLVALAERGAPFVLCGPNHNAMGMLLPIDGHHVQAKRIEAQIAAS LPVHKRLWAAVVKSKLEQQAAALEAAAAPTAPLLALVSKVKSGDPENIEGQGARRYWG LLFGNTFRRDQNGDGVNALLNYGYTILRSATARAVVAAGLHPSIGLHHSNDSNAMRLV DDLMEPFRPVVDLKVWQLLAQGEAHVTPETKRALVRVLYDDMQTSVGVTPVMVCMQKL AISLAQVYLGERTKLDLPLQGLPLALAGSSESD" misc_feature 221211..222041 /locus_tag="Alide2_0195" /note="CRISPR/Cas system-associated protein Cas1; Region: Cas1_I-II-III; cl00656" /db_xref="CDD:193901" gene 222174..222389 /locus_tag="Alide2_0196" /db_xref="GeneID:10481212" CDS 222174..222389 /locus_tag="Alide2_0196" /inference="protein motif:TFAM:TIGR01573" /note="KEGG: vei:Veis_1232 CRISPR-associated Cas2 family protein; TIGRFAM: CRISPR associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2" /codon_start=1 /transl_table=11 /product="CRISPR-associated protein Cas2" /protein_id="YP_004386150.1" /db_xref="GI:330822847" /db_xref="InterPro:IPR019199" /db_xref="InterPro:IPR021127" /db_xref="GeneID:10481212" /translation="MWMVVMFDLPVVEKSERRAATGFRNALLDLGFEMSQFSVYMRFC TSQTQVDTLLLIHFQIWAISGRVHVEI" misc_feature 222174..>222314 /locus_tag="Alide2_0196" /note="CRISPR/Cas system-associated protein Cas2; Region: Cas2_I_II_III; cl11442" /db_xref="CDD:196235" gene 222440..222700 /locus_tag="Alide2_0197" /pseudo /db_xref="GeneID:10481213" gene complement(222726..224240) /locus_tag="Alide2_0198" /db_xref="GeneID:10481214" CDS complement(222726..224240) /locus_tag="Alide2_0198" /inference="protein motif:PFAM:PF03050" /note="PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66" /codon_start=1 /transl_table=11 /product="transposase IS66" /protein_id="YP_004386151.1" /db_xref="GI:330822848" /db_xref="InterPro:IPR004291" /db_xref="GeneID:10481214" /translation="MVIDEQALSELDAEQLREVTQRLLAELRHQRALNEKLTYECALL KRLKFAAQSERHSADQKSLLEDEIDADLAAVAVEIEQLQPPAAAPEAKQQPKRQPLPA HLPRREIRHEPESTTCACGCRMQRIGEDVAEKLDYVPGVFTVERYIRGKWACTQCETI TQAPVEAHVIDKGIPTAGLLAQVLVAKYQDHQPLYRQENIFGRAGLAIPRSTLAQWVG TCGARLQPLVDALKAEVLGHRVLHGDETPVAMLKPGSGKTHRAYLWAYAPGAFEATRA VVYDFCESRAGEHARAFLGDWRGSLICDDYAGYKASFSQGVTEAGCLAHARRKFFDLH AAGKSQIAELALMQFARVYEIERQVQPLAAPERLQVRQQHSRPILDALHQWMVLQRQQ VAGNSATAKALDYSLKRWAALTRFVDDPQLPPDNNWIENQIRPVALGRSNWLFAGSLR AGQRAAAVMSLIQSARMNGHDPYAYLKDVLTRLPTHKASRIEELLPHRWQPIDI" misc_feature complement(223914..224138) /locus_tag="Alide2_0198" /note="Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007" /db_xref="CDD:193480" misc_feature complement(223746..223910) /locus_tag="Alide2_0198" /note="putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; cl14891" /db_xref="CDD:196852" misc_feature complement(222879..223727) /locus_tag="Alide2_0198" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(224323..224655) /locus_tag="Alide2_0199" /db_xref="GeneID:10481215" CDS complement(224323..224655) /locus_tag="Alide2_0199" /inference="protein motif:PFAM:PF05717" /note="PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like" /codon_start=1 /transl_table=11 /product="IS66 Orf2 family protein" /protein_id="YP_004386152.1" /db_xref="GI:330822849" /db_xref="InterPro:IPR008878" /db_xref="GeneID:10481215" /translation="MIRIDEAWLATTPLDMRAGTDTALARVIATFGAAHPHHAYVFAN QRANRLKVLVHDGVGLWLAARRLHQGKFVWAPAGSPNVALEHAQLNALVLGLPWQRVG SQGAISVV" misc_feature complement(224350..224649) /locus_tag="Alide2_0199" /note="putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; cl14891" /db_xref="CDD:196852" gene complement(224652..225080) /locus_tag="Alide2_0200" /db_xref="GeneID:10481216" CDS complement(224652..225080) /locus_tag="Alide2_0200" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004386153.1" /db_xref="GI:330822850" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10481216" /translation="MLKDPQTPRYAQRRTHRTYTPQFKAELVAACRQPGASVAAVALQ HGMNANVLHRWLKEWAQGFHRLEAGVSTAVVASPPPAFIPIDLSAVPPASAGELPSAS LPTPADGIRIECQRPGMSVTVHWPLSGAAECAQMLRELLR" misc_feature complement(224838..225044) /locus_tag="Alide2_0200" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 225118..226470 /locus_tag="Alide2_0201" /pseudo /db_xref="GeneID:10481217" gene 226463..227278 /locus_tag="Alide2_0202" /db_xref="GeneID:10481218" CDS 226463..227278 /locus_tag="Alide2_0202" /inference="protein motif:PFAM:PF01695" /note="KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="IstB domain-containing protein ATP-binding protein" /protein_id="YP_004386154.1" /db_xref="GI:330822851" /db_xref="GO:0005524" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481218" /translation="MHDLMDAFKALGLHGMASAWPEVLGTARMKSLDHEAVLHQLIKA ETAQREVRSMAYQMRVARFPSHRDLAGFDFAHAQLDEALVRQLHTLRFVESAHNVVLV GGPGTGKTHLATSLGIEAIRMHGKRVRFFSTVELVNALELEKAQSKAGQLAHRLMYVD LVILDELGYLPFTQSGGAMLFHLLSKLYERTSVVITTNLTFSEWSSVFGDAKMTTALL DRLTHHCHIVETGNESWRFKHSSAAGAAPPKQRNKAQKGDRKAADPIDLSTTE" misc_feature 226463..227197 /locus_tag="Alide2_0202" /note="DNA replication protein [DNA replication, recombination, and repair]; Region: DnaC; COG1484" /db_xref="CDD:31673" misc_feature 226703..227143 /locus_tag="Alide2_0202" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 226769..226792 /locus_tag="Alide2_0202" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(226772..226795,226955..226957,227054..227056) /locus_tag="Alide2_0202" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 226943..226960 /locus_tag="Alide2_0202" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 227120..227122 /locus_tag="Alide2_0202" /note="arginine finger; other site" /db_xref="CDD:99707" gene 227344..227502 /locus_tag="Alide2_0203" /pseudo /db_xref="GeneID:10481219" repeat_region 227639..232423 /note="CRISPRS" /rpt_unit_range=227639..227675 gene complement(232822..233364) /locus_tag="Alide2_0204" /db_xref="GeneID:10481220" CDS complement(232822..233364) /locus_tag="Alide2_0204" /EC_number="2.7.1.71" /inference="protein motif:PRIAM:2.7.1.71" /note="KEGG: dia:Dtpsy_0168 shikimate kinase; PFAM: Shikimate kinase" /codon_start=1 /transl_table=11 /product="Shikimate kinase" /protein_id="YP_004386155.1" /db_xref="GI:330822852" /db_xref="InterPro:IPR000623" /db_xref="GeneID:10481220" /translation="MQTRCALVGMPGSGKSTVGRQLARRLGLPFIDLDQRLEQQLGTS IRNYFEQHGEQAFRDHESALLAALADEPGGMILSTGGGAVLRPENREALRRSFPHVMY LRASPEEIFRRIKHDRTRPLLQVADPLARLRELYRDRDPLYRETARYVIETGRPTVNT LVNMAMMQLEMAPGKPDLNT" misc_feature complement(232849..233364) /locus_tag="Alide2_0204" /note="shikimate kinase; Reviewed; Region: aroK; PRK00131" /db_xref="CDD:178887" misc_feature complement(232891..233349) /locus_tag="Alide2_0204" /note="Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the...; Region: SK; cd00464" /db_xref="CDD:30188" misc_feature complement(order(232891..232893,233005..233007, 233026..233028,233314..233331)) /locus_tag="Alide2_0204" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:30188" misc_feature complement(order(233263..233265,233269..233271, 233317..233319)) /locus_tag="Alide2_0204" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:30188" misc_feature complement(order(232948..232950,233119..233127, 233182..233184,233191..233193,233263..233265)) /locus_tag="Alide2_0204" /note="putative shikimate binding site; other site" /db_xref="CDD:30188" gene 233470..234369 /locus_tag="Alide2_0205" /db_xref="GeneID:10481221" CDS 233470..234369 /locus_tag="Alide2_0205" /inference="protein motif:PFAM:PF03631" /note="PFAM: Ribonuclease BN-related; KEGG: ajs:Ajs_0151 ribonuclease BN" /codon_start=1 /transl_table=11 /product="ribonuclease BN" /protein_id="YP_004386156.1" /db_xref="GI:330822853" /db_xref="GO:0004540" /db_xref="InterPro:IPR004664" /db_xref="GeneID:10481221" /translation="MQNLNQGARRLMQPAAPLLRAVQLWLDAEGLRMSAAMSFYGMLS LAPLLLLLVGVLGWWVDKAYLESSLIAQVQGVMGERGAEVVRMALASAKAPAQGWLAS IAGFVLLLSGATGVFAELQSALARLWVHGRAAPERKPWWHMASLRLRGLAYVLAIGFL LLISLVLSTAIKVLATWAGALLPFGAGVLLQFANEAVAFAVAVLLFVGLMRIGSGPKP PLSCLVLGAAVGAALFTAGKQLLAWYLSTAAVVSAYGAAGSLVVLLMWIYFSSAVLLF GASCARALDEARTAAGAQPVGQG" misc_feature 233545..234333 /locus_tag="Alide2_0205" /note="Ribonuclease BN-like family; Region: Ribonuclease_BN; cl07918" /db_xref="CDD:195647" gene 234495..235211 /locus_tag="Alide2_0206" /db_xref="GeneID:10481222" CDS 234495..235211 /locus_tag="Alide2_0206" /inference="protein motif:PFAM:PF05433" /note="PFAM: Rickettsia 17kDa surface antigen; KEGG: ajs:Ajs_0152 17 kDa surface antigen" /codon_start=1 /transl_table=11 /product="17 kDa surface antigen" /protein_id="YP_004386157.1" /db_xref="GI:330822854" /db_xref="InterPro:IPR008816" /db_xref="GeneID:10481222" /translation="MNPATSSQPAASVKWLWAAVGALGVSVLALGGTLLAQNLRGDAS PAAQATAAALRTPESEIIDEKAPQGQAQQALAATDSRAVQSRRAPMPQADSYLQPAAQ SRPAAPVCASCGRVESVQAIEQAAPATGLGAVAGGVLGGVLGNQIGKGSGRTAATVLG AVGGGYVGHKVEERTRTTTVYQMRVRMQDGSVRSFTRSQPVAEGTPVRVQGKGFRVDD GSGDADRAGTQPVRVVDRGY" sig_peptide 234495..234605 /locus_tag="Alide2_0206" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.752) with cleavage site probability 0.635 at residue 37" gene complement(235268..236041) /locus_tag="Alide2_0207" /db_xref="GeneID:10481223" CDS complement(235268..236041) /locus_tag="Alide2_0207" /EC_number="1.18.1.2" /inference="protein motif:PRIAM:1.18.1.2" /note="KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding" /codon_start=1 /transl_table=11 /product="ferredoxin--NADP(+) reductase" /protein_id="YP_004386158.1" /db_xref="GI:330822855" /db_xref="InterPro:IPR001433" /db_xref="InterPro:IPR008333" /db_xref="GeneID:10481223" /translation="MSAFHEERVLSVHHWTDRLFSFTTTRDPALRFSNGHFTMIGLKV NDKPLLRAYSIVSANYEEHLEFLSIKVPDGPLTSRLQHIKVGDSIIVGKKPTGTLLID YLLPAKRLYLMSTGTGLAPFLSVIRDPETYEKFEEVVLIHGVRQVAELAYHDYITREL PKHEFLGELVTKQLKYYPTVTREPFRNQGRIPNLIESGKLFTDLGVPPLDPLTDRAML CGSPEMLASLKTILEHRDFEEGNTTRPGDFVIERAFVEK" misc_feature complement(235280..236041) /locus_tag="Alide2_0207" /note="Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018" /db_xref="CDD:31221" misc_feature complement(235283..236020) /locus_tag="Alide2_0207" /note="Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently...; Region: FNR1; cd06195" /db_xref="CDD:99792" misc_feature complement(order(235283..235285,235691..235693, 235811..235816,235820..235822,235829..235831, 235835..235837,235841..235843,235880..235891, 235931..235933)) /locus_tag="Alide2_0207" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99792" misc_feature complement(order(235880..235885,235889..235891)) /locus_tag="Alide2_0207" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99792" misc_feature complement(order(235751..235753,235757..235759, 235784..235786,235802..235804,235811..235813, 235820..235822)) /locus_tag="Alide2_0207" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99792" misc_feature complement(order(235679..235681,235685..235696, 235706..235708)) /locus_tag="Alide2_0207" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99792" misc_feature complement(order(235379..235384,235607..235615, 235688..235693)) /locus_tag="Alide2_0207" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99792" gene 236234..237430 /locus_tag="Alide2_0208" /db_xref="GeneID:10481224" CDS 236234..237430 /locus_tag="Alide2_0208" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_0172 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004386159.1" /db_xref="GI:330822856" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10481224" /translation="MHKRFTAFVAALAWGLGAAQAQDVYTIGEINSYKAQPAFLEPYK KGMELAVAQVNATGGVGGKKLRLVTRDDNGNPGDAVRAAEELIAREKVDVLMGSFLSH VGLALTDFAQQKKRFFLAAEPLTDKIVWENGNRYTFRLRPSTYMQVAMLVPEAAAMKK KRWAIVYPNYEYGQSAVATFKQLLKAAQPDVEFVAEQAAPLGKVDAGSVVQALADAKP DAIFNVLFAADLAKFVREGNTRGLFAGKGVVSLLSGEPEYLDTLKGEAPEGWIVTGYP WYAIHTPDHEAFLDAYKKRFKDYPRAGSVVGYNAIQSIAAGLKKAGSADTEKLIAAFR GLEVRTPFGPITYRAQDHQSTMGAYVGKTGLYGGKGVMVDFKYMDGAKFQPSDAEVKK LRPAAP" sig_peptide 236234..236299 /locus_tag="Alide2_0208" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 22" misc_feature 236300..237355 /locus_tag="Alide2_0208" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 236309..237322 /locus_tag="Alide2_0208" /note="Periplasmic solute-binding domain of active transport proteins; Region: PBP1_Arsenic_SBP_like; cd06330" /db_xref="CDD:107325" misc_feature order(236528..236536,236597..236605,236747..236749, 236909..236911,236987..236989) /locus_tag="Alide2_0208" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107325" gene 237447..239345 /locus_tag="Alide2_0209" /db_xref="GeneID:10481225" CDS 237447..239345 /locus_tag="Alide2_0209" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: ajs:Ajs_0155 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386160.1" /db_xref="GI:330822857" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10481225" /translation="MDFSGLLAQLLNGLAGASTLFLVAAGLSLIFGVTRIVNFAHGSF YMLGLFAAYSCVEQLAGAIGFWPALLLAPLAVGLLGALVELLLLRRIYHASELLQLLA TFALVLVIKDAALWLWGPEELFGPRAPGLAGAVDLLGRRFPAYDLFLIAVGPLVLVLL TLLLTRTRWGTLVRAATQDREMVGALGVNQAWLFTGVFALGALLAGLGGALQLPREPA SLELDMLTIGAAFVVVVVGGMGSIPGAFVAALLIAELKAVCIWLGVVQVGGVAVAFPK LTLVVEFLVMALVLVWRPWGLMGRPQAAVRAPGAPEALLHGAGARAAAAWAALLVALA LLPLAAGQEGYATVLLTDVAIAALFAASLHFILGPGGMHSFGHAAYFGLGAYGAALLV RWLDLPMGAALLLGPLAAAAGALVYGWFCVRLSGVYLAMLTLAFAQITWAVAFQWDGL TGGSNGLTGIWPPEWAAQGAAFYWLALALAAAGVYLLRRMLFAPLGWALRAARDSAPR AEAIGIHVRRVQWAAFVVAGLLAGLAGALFAFSKGGVAPDALWVGKSVDGLVMVLLGG VQQLAGPLVGAAAFTWLHDSVARATDYWRALLGGTMLVLVLLFPQGISGFAQYWQAKT ALKKGVAA" misc_feature 237498..238340 /locus_tag="Alide2_0209" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 237987..238043 /locus_tag="Alide2_0209" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" misc_feature 238503..239231 /locus_tag="Alide2_0209" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 238965..239021 /locus_tag="Alide2_0209" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 239342..240880 /locus_tag="Alide2_0210" /db_xref="GeneID:10481226" CDS 239342..240880 /locus_tag="Alide2_0210" /EC_number="3.6.3.17" /inference="protein motif:PRIAM:3.6.3.17" /note="PFAM: ABC transporter-like; KEGG: vei:Veis_0860 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="monosaccharide-transporting ATPase" /protein_id="YP_004386161.1" /db_xref="GI:330822858" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481226" /translation="MTLLRVENLRKSFGGVQAVQGVSFALAAGELLALIGPNGAGKST TFNMVDGQLAPDGGRVLLDGQDITGLSPRAIWRRGVGRTFQIAQTFASFSVLQNVQLA LLSHDRKAWRWWRRADAHRPQDALALLEQVGMAAQAHRPCSELAYGDVKRVELAMALA HAPRLLLMDEPTAGMAPAERLALMRLVQRLARERRMAVLFTEHSMDVVFGQADRVAVL VRGQLLAEGTPDAIRQDERVQQVYLGQGLQDFEKNSCQRPPAKGSGPKTPEMPGAPLL QMQDLDAWYGAAHILHGVSLAVGRGEVVALMGRNGAGKSTTLKSIAGLLQRRSGRMAF MGRRIDTLAPHQIARLGLGYVPEDRRIFTDLTVLENLEAGRQPPRHWPGGQPVPHWTP QRLFALFPNLGEMPNRPGGRMSGGEQQMLTVARTLMGQPCLVLLDEPSEGVAPVIVEQ MARTILALKAQGMGILLSEQNLPFAQAVADRAYVLEQGRIVHEAPMAELARDVQARKQ YLGV" misc_feature 239342..240073 /locus_tag="Alide2_0210" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 239351..240055 /locus_tag="Alide2_0210" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 239447..239470 /locus_tag="Alide2_0210" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(239456..239461,239465..239473,239594..239596, 239846..239851,239948..239950) /locus_tag="Alide2_0210" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 239585..239596 /locus_tag="Alide2_0210" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 239774..239803 /locus_tag="Alide2_0210" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 239834..239851 /locus_tag="Alide2_0210" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 239858..239869 /locus_tag="Alide2_0210" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 239936..239956 /locus_tag="Alide2_0210" /note="H-loop/switch region; other site" /db_xref="CDD:72978" misc_feature 240158..240877 /locus_tag="Alide2_0210" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 240167..240847 /locus_tag="Alide2_0210" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 240263..240286 /locus_tag="Alide2_0210" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(240272..240277,240281..240289,240410..240412, 240650..240655,240749..240751) /locus_tag="Alide2_0210" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 240401..240412 /locus_tag="Alide2_0210" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 240578..240607 /locus_tag="Alide2_0210" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 240638..240655 /locus_tag="Alide2_0210" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 240662..240673 /locus_tag="Alide2_0210" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 240737..240757 /locus_tag="Alide2_0210" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 241028..243928 /locus_tag="Alide2_0211" /db_xref="GeneID:10481227" CDS 241028..243928 /locus_tag="Alide2_0211" /inference="protein motif:PFAM:PF00112" /note="KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal" /codon_start=1 /transl_table=11 /product="peptidase C1A papain" /protein_id="YP_004386162.1" /db_xref="GI:330822859" /db_xref="GO:0008234" /db_xref="InterPro:IPR000668" /db_xref="GeneID:10481227" /translation="MPTYLLRQGSQDPLVARLRKVLVAELGDAAESYPQLDKGGATFD AMLDAALRCWQNGRGLIADGIVGPCNLLALGLADWPPLDCELNTDSVHALFPATKPVN IARYLGYVTAALRAVGLLGRDMVLAALGTIRAETEGFVPISEFQSKYNTAPGGAPFAL YDGRLGNRRGEGAMFRGRGFVQLTGRSNYETYGAKLGLDLAATPELANAPEVAALLLA LFLDAHRDAMQACLAAGDLKGARRLVNGGSHGLANFQSVFELAQNALPAAAAPAAPPP VGRRAGGRAGATATRKRAPRGQAAQEPASGRTLNAQADAPDLRDRPYTPPPASLQPEW PTTEAVTQWLPAYAKAGLVLNQGQEGACTGFGLAGVVNYLRWVRAGLPKAMVSVSPRM LYNMARRYDEYAGENYEGSSCRGAIKGWFNHGVCLEDDWPYQAAAQLPPHFGFAERAR GTTVGVYYRIDTSSISDLQAAIMHVGAIFVSSYVHAGWQEVATSTLPKGHASLPVIAF DGIPRRDAGHAYALVGYNDRGFVLQNSWGPGWGAHGFAVLSYEDWLQHAMDAWVVALG VPGLIGGGRNVPLAAGGRAAAGGGWSESQTLDHVISVGNDGRMSRYLTTDERTRNLSY QVSVLPDQWFRAQPPEGKKRLILYVHGGLNSEADGIKRARSLGRLFEANGCYPLFVVW HTGLLESIRYYLDDWRAGRPAAAGVKEWATERTDALIESTIGRTVVRALWSEMKENAG YAWQATRAGDLLVRALGELRALWGDQLEVHLMGHSAGSIWLGHMLTWMAKAQATSGAP GLREAVAGVHLYAPACTVAFANQHFADKALLGRTHVAVLSDDRERDDNTAYIYRKSLL YLVSNALEQDRRTPLLGLERALTGRNDQNTWDGASTTGETLAIWRRAAAEARLTSRLK IVSEDKVLTATPDVRIPASHGAFDNDVAIVGATLERICGQPLREPPRDLRGY" misc_feature <241031..>241249 /locus_tag="Alide2_0211" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2989" /db_xref="CDD:32808" misc_feature <241508..241786 /locus_tag="Alide2_0211" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" misc_feature 242081..242713 /locus_tag="Alide2_0211" /note="C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some...; Region: Peptidase_C1; cd02619" /db_xref="CDD:30293" misc_feature order(242093..242095,242111..242113,242579..242581, 242627..242629) /locus_tag="Alide2_0211" /note="active site" /db_xref="CDD:30293" gene complement(244081..245114) /locus_tag="Alide2_0212" /pseudo /db_xref="GeneID:10481228" gene complement(245172..245550) /locus_tag="Alide2_0213" /pseudo /db_xref="GeneID:10481229" gene complement(245625..247160) /locus_tag="Alide2_0214" /db_xref="GeneID:10481230" CDS complement(245625..247160) /locus_tag="Alide2_0214" /inference="protein motif:TFAM:TIGR00368" /note="TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: dia:Dtpsy_0179 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Mg chelatase subunit ChlI" /protein_id="YP_004386163.1" /db_xref="GI:330822860" /db_xref="InterPro:IPR000523" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004482" /db_xref="GeneID:10481230" /translation="MSLALVQSRALLGLQASAVTVEVHLANGLPSFALVGLADVEVKE ARERVRSALQNAGLEFPTNKKITVNLAPADLPKDSGRYDLPIALGILAASGQIAAERL AGWEFAGELSLSGLLRPVRGALATSLALRAEQPPVRMVLPPGSAEEAALVPGAEIYRA RHLLDVVRQFLPAAAPPQEDNDGWQRLAPAAPAVHTSSPDLADVKGQAAAKRALEIAA AGGHGLLLVGPPGSGKSMLAQRFASLLPPMSVEQALESAAIASLAGRFTGAQWMQRVT ASPHHSCSAVALVGGGSPPRPGEISLAHEGVLFLDEFPEFARSALEALREPLETGLIT ISRAAQRAEFPARFQLVAAMNPCPCGFAGSAQRACRCTPDQVARYQGKLSGPLLDRID LHVEVPHLPAEDLLNAPAGEASSAVRERVARAHALALARQGTPNQALQGQQLDRMAAL DEAAARFLQTAAARMGWSARGTHRALKVARTIADLAASEQVGVAHVAEAVQYRRVLRG TQA" misc_feature complement(245640..247118) /locus_tag="Alide2_0214" /note="Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]; Region: COG0606" /db_xref="CDD:30951" misc_feature complement(245946..246563) /locus_tag="Alide2_0214" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 247299..248030 /locus_tag="Alide2_0215" /db_xref="GeneID:10481231" CDS 247299..248030 /locus_tag="Alide2_0215" /inference="protein motif:TFAM:TIGR02001" /note="KEGG: dia:Dtpsy_0180 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386164.1" /db_xref="GI:330822861" /db_xref="InterPro:IPR010239" /db_xref="GeneID:10481231" /translation="MSHASLKSLSLALVAAAMPVLASAELTANVALTSNYKFRGQDQD VHRIKAVSPAIQGGFDYTFGESGFYLGNWNSSVDWLQGNSIESDLYGGYRFKAGALDL DLGALAYIYPGNTAGNTTELYGAATWGPLTAKYSHTVSKDYFGWAGAKTSGLRGRNTG YLNLAFAREVAPSVTLKAAVGYTRFAGDIRDLGVPSYVDYSVGGAYDFGAGLSLSAAV AGANKKGFFGDANKARLIVTLSKTL" sig_peptide 247299..247373 /locus_tag="Alide2_0215" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.729 at residue 25" misc_feature 247371..247922 /locus_tag="Alide2_0215" /note="Bacterial protein of unknown function (Gcw_chp); Region: Gcw_chp; cl09901" /db_xref="CDD:164168" gene 248050..248388 /locus_tag="Alide2_0216" /db_xref="GeneID:10481232" CDS 248050..248388 /locus_tag="Alide2_0216" /inference="protein motif:PFAM:PF00543" /note="KEGG: aav:Aave_0233 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II" /protein_id="YP_004386165.1" /db_xref="GI:330822862" /db_xref="GO:0030234" /db_xref="InterPro:IPR002187" /db_xref="GeneID:10481232" /translation="MKMITAIIKPFKLDEVREALSDVGVQGITVTEVKGFGRQKGHTE LYRGAEYVVDFLPKVKIEAAVADDLAERVIEAIEGAARTGKIGDGKIFVADLEQVVRI RTGETGGQAL" misc_feature 248059..248364 /locus_tag="Alide2_0216" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene 248411..249799 /locus_tag="Alide2_0217" /db_xref="GeneID:10481233" CDS 248411..249799 /locus_tag="Alide2_0217" /inference="protein motif:TFAM:TIGR00836" /note="KEGG: ajs:Ajs_0164 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="YP_004386166.1" /db_xref="GI:330822863" /db_xref="GO:0008519" /db_xref="InterPro:IPR001905" /db_xref="GeneID:10481233" /translation="MRKLLASLALGLHLLAGGTAALAQAPAAAPEPVAAAAAPAPDAA PATAPEAAPAPKVDSGDTAWMLTSTLLVILMTIPGLALFYGGLGRAKNMLSVLMQVFV VFSLISILWSLYGYSLAFSGEGRLVGDLSKAFLQGVGPETFGALATIPEYVFLAFQGT FAAITVALVVGSFAERMRFSAVLIFALLWFTFSYVPMAHIVWGGGLLAQDGALDFAGG TVVHINAGIAGLVGAYMVGKRIGFGREAFTPHSLTLTMVGASLLWVGWFGFNAGSAGA ANAAAGLAFVNTVLATAAATLSWIAGEAVHKGKASMLGAASGAVAGLVAVTPAAGFVG PMGAIAIGLVAGLVCLWGVGGLKRMLRVDDAFDVFGVHGVGGIVGAILTGVFAAQGLG GTGGATPETFSMGAQVWIQTKSVLFTIVWSGVVSVVAYKIADLLVGLRVDEESERQGL DISAHGETAYHR" sig_peptide 248411..248482 /locus_tag="Alide2_0217" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.964 at residue 24" misc_feature 248579..249796 /locus_tag="Alide2_0217" /note="Ammonium Transporter Family; Region: Ammonium_transp; cl03012" /db_xref="CDD:194508" gene 250530..250853 /locus_tag="Alide2_0218" /db_xref="GeneID:10481234" CDS 250530..250853 /locus_tag="Alide2_0218" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004386167.1" /db_xref="GI:330822864" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10481234" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADAQRIKELEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature 250530..250739 /locus_tag="Alide2_0218" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 250850..251765 /locus_tag="Alide2_0219" /pseudo /db_xref="GeneID:10481235" gene 251794..252933 /locus_tag="Alide2_0220" /pseudo /db_xref="GeneID:10481236" gene 252923..253726 /locus_tag="Alide2_0221" /db_xref="GeneID:10481237" CDS 252923..253726 /locus_tag="Alide2_0221" /inference="protein motif:PFAM:PF01695" /note="KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="IstB domain-containing protein ATP-binding protein" /protein_id="YP_004386168.1" /db_xref="GI:330822865" /db_xref="GO:0005524" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481237" /translation="MRHDPAIASIVIMLRELKMHGMAQAVAELAEQGAPAFDAAQPIL SQLLKAETAEREVRSVAYQLKVARFPAYRDLAGFDFSHSEVNEALVRQLHRCEFLENA NNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEEEKAQGKPGQIAH RLAYADLVILDELGYLPFSTSGGALLFHLLSKLYERTSVVITTNLSFSEWANVFGDAK MTTALLDRLTHHCHILETGNDSYRFKNSSAQQPPQTTKKEKATKNLSTT" misc_feature 252950..253654 /locus_tag="Alide2_0221" /note="transposase/IS protein; Provisional; Region: PRK09183" /db_xref="CDD:181681" misc_feature 253178..253621 /locus_tag="Alide2_0221" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 253247..253270 /locus_tag="Alide2_0221" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(253250..253273,253433..253435,253532..253534) /locus_tag="Alide2_0221" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 253421..253438 /locus_tag="Alide2_0221" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 253598..253600 /locus_tag="Alide2_0221" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(253777..253902) /locus_tag="Alide2_0222" /db_xref="GeneID:10481238" CDS complement(253777..253902) /locus_tag="Alide2_0222" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386169.1" /db_xref="GI:330822866" /db_xref="GeneID:10481238" /translation="MTFTPTKAALGAALLAASMLAPAQDKGARISDGIVLISTQS" sig_peptide complement(253840..253902) /locus_tag="Alide2_0222" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.364 at residue 21" gene complement(254064..254954) /locus_tag="Alide2_0223" /db_xref="GeneID:10481239" CDS complement(254064..254954) /locus_tag="Alide2_0223" /EC_number="1.1.1.31" /inference="protein motif:PRIAM:1.1.1.31" /note="KEGG: esa:ESA_04058 hypothetical protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="YP_004386170.1" /db_xref="GI:330822867" /db_xref="InterPro:IPR006115" /db_xref="GeneID:10481239" /translation="MKAGFIGLGRMGFALASHLLRNGVQLAVHDIQSAPVDKLVALGA SRAASVQALAAGADVVFTMLPGPKQSREVILGKGGVLAGLRRGGCLVELSTIDTDTVD ALAAAAEKQGVRFADAPVGRLAAHADRGESLFMLGAHDADRGALEPLLLKMGTTVLHC GAPGSGTRMKLINNLMVLCYCQLNSEALVLAGALGLDARKTFDVLTGTTASNGQLKEK WPVKVLAGDLTPGFDIALGFKDLTLACQAAQSAGVSLPMGNLARSLFQLARHAGKDGQ DTSCMTDFWAESNGQPPVRL" misc_feature complement(254118..254954) /locus_tag="Alide2_0223" /note="3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084" /db_xref="CDD:32267" misc_feature complement(<254433..254954) /locus_tag="Alide2_0223" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(254951..255811) /locus_tag="Alide2_0224" /db_xref="GeneID:10481240" CDS complement(254951..255811) /locus_tag="Alide2_0224" /inference="protein motif:PFAM:PF00561" /note="PFAM: Alpha/beta hydrolase fold-1; KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004386171.1" /db_xref="GI:330822868" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10481240" /translation="MRVEKEAATGGYVNFDIAGRMCRVYYETAGSGQPLLCLHTAGSD TRQYRALLNSPELTANHQVICFDMPWHGKSSPPEGWHTEEYRLTSALYVQTILAFMDA MQVERPIAMGCSIGGRVVLHLALQCPERFKALIGLQSGAHVNPYYDLDWLHRPDVHGG EVCAGIVSGLVGPGAPERDRWETLWHYMQGGPGVFKGDLHFYTGEGDLRGRVQRIDTA RCPLYLLTGEYDYSCTPEDSEDLARLIPGAQLQIMPGLGHFPMSEAPQEFLRHLLPVL QRIHTNEGNT" misc_feature complement(254993..255730) /locus_tag="Alide2_0224" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature complement(254999..255709) /locus_tag="Alide2_0224" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene complement(255801..256151) /locus_tag="Alide2_0225" /db_xref="GeneID:10481241" CDS complement(255801..256151) /locus_tag="Alide2_0225" /inference="similar to AA sequence:KEGG:AXYL_03188" /note="KEGG: axy:AXYL_03188 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386172.1" /db_xref="GI:330822869" /db_xref="GeneID:10481241" /translation="MHTTNDDWLAHQGRWVNVTFLLRKGDAEYLVTLRDGRVQRIAPG PHVMPCWTFALVASDDAWERFWAAEPQPRFHDLMAMVRFKALRIEGDMTVFMRNLLYF KALVKQLGGHIHAR" gene complement(256234..257301) /locus_tag="Alide2_0226" /db_xref="GeneID:10481242" CDS complement(256234..257301) /locus_tag="Alide2_0226" /inference="protein motif:TFAM:TIGR03082" /note="KEGG: vap:Vapar_4786 membrane protein AbrB duplication; TIGRFAM: AbrB duplication, membrane protein; PFAM: Putative ammonia monooxygenase" /codon_start=1 /transl_table=11 /product="membrane protein AbrB" /protein_id="YP_004386173.1" /db_xref="GI:330822870" /db_xref="InterPro:IPR007820" /db_xref="InterPro:IPR017516" /db_xref="GeneID:10481242" /translation="MRSTLSKLLTLLLAWAAAEGCRRLRMPVPWMLGPLLATALATMA GQPTRSSLRLRNCGQWVMGASLGLYFTPPVVAQLIGLWWAVLAAVAWALALGAAYGRW LYRSCAGRLRGVSDAALRPSAYFAGAIGAASEMTLLAEREGARTDLVAASHSLRMLIV VLVMPFGMLLAKAWWNLETVDLVPPASAPFAAAGLAWLALFTGAGGLALQLGRLPNPW FLGPLLVAIGLSATGTAPSGVPTPLSNAAQLVIGVSLGVRFSPLFLHTAPRWLAQVAL GTLGLLAACAAFGLLLAWATGLHAATAILGTAPGGMTEMSITAKVLQLGVPVVTALQV TRLVAVLVLVRPAYRLWARQP" misc_feature complement(256804..257244) /locus_tag="Alide2_0226" /note="membrane protein AbrB duplication; Region: Gneg_AbrB_dup; TIGR03082" /db_xref="CDD:188278" misc_feature complement(256237..257214) /locus_tag="Alide2_0226" /note="Putative ammonia monooxygenase; Region: AmoA; pfam05145" /db_xref="CDD:113899" misc_feature complement(256321..256656) /locus_tag="Alide2_0226" /note="membrane protein AbrB duplication; Region: Gneg_AbrB_dup; TIGR03082" /db_xref="CDD:188278" gene complement(257304..258650) /locus_tag="Alide2_0227" /pseudo /db_xref="GeneID:10481243" gene 258805..259959 /locus_tag="Alide2_0228" /db_xref="GeneID:10481244" CDS 258805..259959 /locus_tag="Alide2_0228" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004386174.1" /db_xref="GI:330822871" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481244" /translation="MDFTLSEEHQAFADSVARFAQDKLKDGALARAHSPHYPWETAAL LAEQGLLGIAFPEEDHGQGGTLMHAVLAIEQVALVCPKSADIVQAGNFGPIRTFVEYA TPEQKQRFLPDLLAGRKLISLGMSEPDAGSAVTELKTSARQEGDGYVINGSKVFSTHS PEADLFLVYVRFGPGVGGIGSVLVERGTPGFQVGEPSSFMNGERWSQLYFDECRIPAA NVLLGPGGFKKQISGFNVERLGNSARALALGRHAFNTAREHALTRKQFGRELCEFQGI QWKFAEMAMKLEQAQLMLYRAAMEGEHGLPSAQSTAMAKLACNLAGWEVSNEALQVMG GTGFSQECLVEYCVRRTRGWMIAGGSIEILKNRIAEGVFGRTFPQRPGKG" misc_feature 258805..259938 /locus_tag="Alide2_0228" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 258823..259914 /locus_tag="Alide2_0228" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature order(258958..258960,259171..259173,259177..259179, 259270..259272,259276..259278,259870..259878, 259882..259884,259888..259890) /locus_tag="Alide2_0228" /note="active site" /db_xref="CDD:173838" gene 259983..260957 /locus_tag="Alide2_0229" /db_xref="GeneID:10481245" CDS 259983..260957 /locus_tag="Alide2_0229" /inference="similar to AA sequence:KEGG:Veis_3320" /note="KEGG: vei:Veis_3320 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386175.1" /db_xref="GI:330822872" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481245" /translation="MKRSLLSLAALAACAWSIAVPAAADAAYPAKPVRIIVGYSAGGP TDAVARLVAAHLQTKLGQPFVVDNRAGAGSNIASEAVAAAAPDGYTLLVAAAPLTMNS HVYKNLKFDAVKSFVPISKLSSAPGVLAVRTDWGVSSVKEFVAAAKKEPGKFTYGTTG LGGSQHMATELFQRLAGVKLTHIPYKGASNVMTDLIAGHVDLAFMTATGAMPHLQAGK VKPLAVAGPQRLSGLPNVPTFAEAGYPAMISDSWNGLLAPAGTPEAIVKKLHAAAVEA LQMPETRTKLESQGAIVIGNSPEEFRADIQREVAHWAEQFKAIKIDMQ" sig_peptide 259983..260057 /locus_tag="Alide2_0229" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.862 at residue 25" misc_feature 260079..260951 /locus_tag="Alide2_0229" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 260124..260945 /locus_tag="Alide2_0229" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 260954..263029 /locus_tag="Alide2_0230" /db_xref="GeneID:10481246" CDS 260954..263029 /locus_tag="Alide2_0230" /inference="protein motif:PFAM:PF02629" /note="KEGG: dac:Daci_1885 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding" /codon_start=1 /transl_table=11 /product="CoA-binding domain-containing protein" /protein_id="YP_004386176.1" /db_xref="GI:330822873" /db_xref="InterPro:IPR003781" /db_xref="GeneID:10481246" /translation="MTPDNDKRLAQALLHPASVALYGASDDVDKMGGRPVQFLKRTGF AGRIYPINPRRDEIQGLKAWPSLQSLPEVPDQVFVLTPTETVIPAVRECAALGVKVVT ILASGFSESGAEGAAREGELRRIAKETGIRILGPSSLGVVNPRTGLVLTANAAFAEPD LPPGKVFVASHSGSMIGALVSRGKARGVGFAGLVSVGSEVDLNVGEICAATLDDPAIE GYLLFLESLRHGPELRAFARAAHARGKPVIAYKLGRSAAAAEMATTHTGAIAGEDDIA EAFLKDMGVARVGVLEALLETFPLARRIPLESAPKRVGVVTTTGGGAAMAVEQLGIRG VVVEPPSADTLKRLEQAGLPCTPGRVLDMTLAGTKYETMKATLDILLTAPEFDLVLAV VGSSARFQPQLAVKPIVECAGGPKPLAAMLVPDAPEALAALTAAGVPCFRTPEACGDA IAAVLARRRPGPEPVLPAPGPARTLSEAEAYGVLHELGVPHAPVALRCFGEAPAPLPF AYPVVAKVCSAEIPHKTEVGGVLLNIGSDEELAAALATLRRNLDERAPKAACDEVLVQ PMQKGLSEVLVGYRVDPDAGPIVMLAAGGIWAEVAKDRSIRLAPVTVETAREMVAEVN ALKPLTGLRGKARGDLEALARTVSALSQLALKPELGIAEAEVNPLLVLPEGQGVVAVD ALVFQWTPA" misc_feature 260966..>261256 /locus_tag="Alide2_0230" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 260990..262315 /locus_tag="Alide2_0230" /note="acetyl coenzyme A synthetase (ADP forming), alpha domain; Region: AcCoA-syn-alpha; TIGR02717" /db_xref="CDD:131764" misc_feature 262451..>263002 /locus_tag="Alide2_0230" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042" /db_xref="CDD:31244" gene 263103..264215 /locus_tag="Alide2_0231" /db_xref="GeneID:10481247" CDS 263103..264215 /locus_tag="Alide2_0231" /inference="protein motif:PFAM:PF01565" /note="PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: dia:Dtpsy_0184 FAD linked oxidase domain protein" /codon_start=1 /transl_table=11 /product="FAD linked oxidase domain-containing protein" /protein_id="YP_004386177.1" /db_xref="GI:330822874" /db_xref="GO:0003824" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="GeneID:10481247" /translation="MEAALRQIIDRVRDSADRRALLRIRGGGTKDFHGPGAPAHAGEP LDMRPLAGIVSYEPSELVVTALAGTPLAELEALLAQHGQSLPFEPPRFAPGGTVGGMV AAGLSGPARASVGAVRDYVLGVEIINGKGELLRFGGQVMKNVAGYDVSRLMAGSWGQL GIITEVSLKVLPVPPAEATLRFDCGQAEALARLHAWGGQPLPLNASCWVQDGGGAGRL YVRLRGARAAVQAACRSMGGAPQDAPTVPADWQACRDQRLPWFTARAADHALWRLSVP QTAPVLALPAGVAPPLVEWHGGLRWVQAPARHGDELRALARQVGGSASCFVAAGADGA GAAGLFDANDGALAAVHQRLRQAFDPAGILNPGRLV" misc_feature 263112..264209 /locus_tag="Alide2_0231" /note="glycolate oxidase FAD binding subunit; Provisional; Region: glcE; PRK11282" /db_xref="CDD:183074" misc_feature 263121..263513 /locus_tag="Alide2_0231" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene 264218..264991 /locus_tag="Alide2_0232" /db_xref="GeneID:10481248" CDS 264218..264991 /locus_tag="Alide2_0232" /inference="protein motif:PFAM:PF06912" /note="PFAM: Protein of unknown function DUF1275; KEGG: dia:Dtpsy_0185 protein of unknown function DUF1275" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386178.1" /db_xref="GI:330822875" /db_xref="InterPro:IPR010699" /db_xref="GeneID:10481248" /translation="MRLLRHLTGRYRTPVANRTLGLLLAFNAGGINAGGFLVVGMYTS HMTGIVSTVGDNLVLGNMALVLGALGTLWAFMSGAGSTAIMVNWARHQHLRSTFALPL LLEAVLMLLFGLMGAITLTWRTPFAVPLTVLLLAYLMGLQNAVITKMSSAEIRTTHMT GICTDIGIELGKALYWNRGGRPAHEQVHVNHKRLRLFASLLSMFMAGGVVGAAGFKYV GFIWVVPLATVLLVLSLPPLAADFDRLGLAWRRRSSRGQ" misc_feature 264335..264826 /locus_tag="Alide2_0232" /note="Protein of unknown function (DUF1275); Region: DUF1275; cl01453" /db_xref="CDD:194139" gene 265028..266266 /locus_tag="Alide2_0233" /db_xref="GeneID:10481249" CDS 265028..266266 /locus_tag="Alide2_0233" /inference="protein motif:PFAM:PF02754" /note="PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: ajs:Ajs_0168 glycolate oxidase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386179.1" /db_xref="GI:330822876" /db_xref="GO:0009055" /db_xref="GO:0051536" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR004017" /db_xref="GeneID:10481249" /translation="MQTQLAPEYQGTPEGQEAEAILRKCVHCGFCTATCPTYQLLGDE LDGPRGRIYLIKQVLEGQEPTRKTQLHLDRCLTCRNCESTCPSGVQYGHLVDIGRRIV EEKVPRPRGEAAVRWALKEGLPSPLFAPAMKLGQAVRGLLPGRLRAKVPPRQQAGRWP AASHARKVLLLQGCVQPAMAPNINAATARVLDAAGIQTLVAPEAGCCGAVKFHLNDQD GGRAQMRANIDAWWPYIERGAVECIVMNASGCGVTVKEYGHILRLDPQYAEKAARVSA LTRDLSELLPDLVPLLKDRVRPAGRAFAYHPPCTLQHGQKLRGGVERHMAALGFTLRV ARTESHLCCGAAGTYSVLNPELSYQLRDRKLGVLGAAFADEPPAAILSANMGCITHLQ SGTEIPVRHWVELLDEALLA" misc_feature 265028..266263 /locus_tag="Alide2_0233" /note="glycolate oxidase iron-sulfur subunit; Provisional; Region: glcF; PRK11274" /db_xref="CDD:183069" misc_feature <265052..>265375 /locus_tag="Alide2_0233" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature 266000..266203 /locus_tag="Alide2_0233" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene 266329..267171 /locus_tag="Alide2_0234" /db_xref="GeneID:10481250" CDS 266329..267171 /locus_tag="Alide2_0234" /inference="protein motif:PFAM:PF04352" /note="KEGG: dia:Dtpsy_0187 ProQ activator of osmoprotectant transporter ProP; PFAM: Fertility inhibition FinO/ProQ; SMART: Fertility inhibition FinO/ProQ" /codon_start=1 /transl_table=11 /product="Fertility inhibition FinO-like protein" /protein_id="YP_004386180.1" /db_xref="GI:330822877" /db_xref="InterPro:IPR016103" /db_xref="GeneID:10481250" /translation="MNDSVNALQPSAEAAQPVQPAAPVAAVEAAGNDAAPRERRRGGR RRSGARREQNPPAGAAGQEGQAAGTAPAPRRTHPLLEQLAGWYPHLFGMQCLPLKRGI FHDLMAAHGEAIDKDALKLALSIHTRSTRYLNAVAQGLRRHDLQGQPVEDMAPEHVHH ALLEVFRRRKPRDGEDLALKLRRRIAQAFEASGLTREAYDALVRGRDEKANALLDEAF AEVAEQGAKAEALLRAFEASGATPEQFADMYGMDRRVVTQSLARARRLRAPAAQAAAP GEAP" misc_feature 266548..266862 /locus_tag="Alide2_0234" /note="FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two component FinOP system which is responsible for repressing bacterial conjugation; the FinOP system represses the transfer (tra) operon of the F-plasmid which...; Region: FinO_conjug_rep; cl00174" /db_xref="CDD:185810" gene complement(267229..268113) /locus_tag="Alide2_0235" /db_xref="GeneID:10481251" CDS complement(267229..268113) /locus_tag="Alide2_0235" /inference="protein motif:PFAM:PF00892" /note="PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0174 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386181.1" /db_xref="GI:330822878" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10481251" /translation="MHSPLPALALLFNAFVWGLSWWPFRQMQGAGLHPLWATALMYCA ILVAMLALRPGVLAQLRAHPGLWLLALSSGLNNVAFNWAITIGDVVRVILLFYLMPAW AVLLAWRILGERPTAQALARLLMAFCGVLLVLWPAEGGVRRLFAALTVADMLALLGGF MFALTNVTVRRLHAVPGQARMFAMFGGCLLLALLVANLGRSVGLVTAFPPPDATWITV AALLSLLLMAGNWALQFGAARLAAGTTAVIMLSEVVFASGSSVLLGASRLTAGTLAGG ALILLAATWSAWRPRARG" misc_feature complement(267709..268071) /locus_tag="Alide2_0235" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene complement(268167..269444) /locus_tag="Alide2_0236" /db_xref="GeneID:10481252" CDS complement(268167..269444) /locus_tag="Alide2_0236" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0193 lysophospholipid transporter LplT" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004386182.1" /db_xref="GI:330822879" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10481252" /translation="MKRGFYTIMSAQFFSSLADNALFVTAVELLRSSGAPEWQRAALV PMFALFYVVLAPWVGAFSDSMPKGRVMFISNAIKVVGCLMMLFGSHPLLAYAVVGLGA AAYSPAKYGILTELLPASQLVKANGWIEGLTIASIILGVLLGGQLVAPHISGVLLDFD LPGVDLGIDLPAEAAILALVPVYMLAAWFNLRIPLTGVEMRPMPRNPVALLPDFWTCN RRLWRDRLGQISLSTTTLFWGVSGNLRYIVLAWSAAALGYGTTQASALVGVVAIGTAA GAVLASMRMRLEQATRVIPLGIAMGLLVILMNAIHSIWLAVPFLIVLGGLGGFLVVPM NALLQHRGHNLMGAGRSIAVQNFNEQAAILGMGVLYSLFTKLGLSAHGAIAAFGLLVA LVMLAILRWHVHNVRRYPKEMVHLRRMARRDRH" misc_feature complement(268206..269444) /locus_tag="Alide2_0236" /note="lysophospholipid transporter LplT; Provisional; Region: PRK11195" /db_xref="CDD:183032" gene 269588..270682 /locus_tag="Alide2_0237" /db_xref="GeneID:10481253" CDS 269588..270682 /locus_tag="Alide2_0237" /EC_number="5.1.1.1" /inference="protein motif:HAMAP:MF_01201" /note="PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: ajs:Ajs_0176 alanine racemase" /codon_start=1 /transl_table=11 /product="alanine racemase" /protein_id="YP_004386183.1" /db_xref="GI:330822880" /db_xref="InterPro:IPR000821" /db_xref="InterPro:IPR001608" /db_xref="InterPro:IPR011079" /db_xref="GeneID:10481253" /translation="MPRPILATIHPAAVQHNLERARRAAPDARMWAVVKANAYGHGIE RVFEGLRSADGIALLDMAEAERVRRLGWRGPVLLLEGVFEPRDLELCSRLSLWHAVHC DEQIDWLAAHKTQAPHRVFLKMNSGMNRLGFAPGRYRSAWARLNALPQVDEISFMTHF SDADGPRGIAHQVQAFHRATQDLPGERCIANSAAILRHGGEAQVRLDWVRAGIALYGS APDHPERTAVDWGLEPAMTLASRIIGVQQLQAGDTVGYGSRFTAEGPLAIGVVACGYA DGYPRHCDTGTPVLVNGVRTRTIGRVSMDMIAVDLTPVPGAGMGAEVTLWGRASNGVV LPIDEVAEAGGTVGYELMCALAPRVPVSVD" misc_feature 269594..270673 /locus_tag="Alide2_0237" /note="alanine racemase; Reviewed; Region: dadX; PRK03646" /db_xref="CDD:179622" misc_feature 269597..270670 /locus_tag="Alide2_0237" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases; Region: PLPDE_III_AR_proteobact; cd06827" /db_xref="CDD:143500" misc_feature order(269684..269686,269690..269692,269702..269704, 269822..269824,269954..269956,269975..269977, 270056..270058,270062..270064,270158..270166, 270215..270226,270632..270634) /locus_tag="Alide2_0237" /note="active site" /db_xref="CDD:143500" misc_feature order(269684..269686,269690..269692,269702..269704, 269822..269824,270062..270064,270158..270163, 270215..270217,270221..270226,270632..270634) /locus_tag="Alide2_0237" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature order(269690..269692,269702..269704,269975..269977, 270062..270064,270632..270634) /locus_tag="Alide2_0237" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature order(269690..269692,270353..270355) /locus_tag="Alide2_0237" /note="catalytic residues [active]" /db_xref="CDD:143500" misc_feature order(270314..270316,270323..270325,270341..270346, 270350..270358,270395..270397,270410..270412, 270428..270430,270494..270496,270500..270502, 270626..270628,270632..270637,270650..270652, 270659..270661) /locus_tag="Alide2_0237" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143500" gene 270901..271920 /locus_tag="Alide2_0238" /db_xref="GeneID:10481254" CDS 270901..271920 /locus_tag="Alide2_0238" /EC_number="1.11.1.5" /inference="protein motif:PRIAM:1.11.1.5" /note="KEGG: dia:Dtpsy_0196 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; Cytochrome c, class I" /codon_start=1 /transl_table=11 /product="cytochrome-c peroxidase" /protein_id="YP_004386184.1" /db_xref="GI:330822881" /db_xref="InterPro:IPR003088" /db_xref="InterPro:IPR004852" /db_xref="GeneID:10481254" /translation="MKQKSSPVRHAARFMLGAVSMAALLMAAPVRAQEPVQPIAGPKV TSPAKVELGKKLWFDPRLSRSGFISCNSCHNLSMGGSDNLKTSIGDKWQKGPINSPTV LNSSLNLAQFWDGRAKDLKEQAGGPIANPGEMAFTHGLAVDMLRSIPQYVAEFKKVFG HDKLTIDEVTAAIAAFEETLVTPNARFDKWLKGDKKAINAQELRGYQLFKSSGCVACH NGPNLGGNSFQKMGLVEPYKTDNPAEGRSAVTGNDAERFNFKVPTLRNVELTYPYFHD GAADTLSQAVDTMGRLQLGKKFTGQENADIVAFLKTLTGDQPKIAMPILPPSSDKTKR PQPFE" sig_peptide 270901..270999 /locus_tag="Alide2_0238" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 33" misc_feature 270964..271857 /locus_tag="Alide2_0238" /note="Cytochrome c peroxidase [Inorganic ion transport and metabolism]; Region: MauG; COG1858" /db_xref="CDD:32043" gene complement(272000..272614) /locus_tag="Alide2_0239" /db_xref="GeneID:10481255" CDS complement(272000..272614) /locus_tag="Alide2_0239" /inference="protein motif:PFAM:PF02798" /note="PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_0197 glutathione S-transferase domain protein" /codon_start=1 /transl_table=11 /product="glutathione S-transferase domain-containing protein" /protein_id="YP_004386185.1" /db_xref="GI:330822882" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="GeneID:10481255" /translation="MTTLTLYYAPGTCAQAVRIALEEAQAPYTPVRMDFASQQQRSPE YLAINPKGRVPALVTEHGVLTETPALLAYVAQRFVQAGLAPADAFGFARMQEFNSYLA STVHVAHAHRPRASRWADEPEAQAAMQRKVPANMTECFDVIERHYLGDGPWMLGEQYT VADGYLFTVAGWLKSDGVDIARFPKVHAHSQRMAARPAVQRALG" misc_feature complement(272009..272605) /locus_tag="Alide2_0239" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature complement(272381..272605) /locus_tag="Alide2_0239" /note="GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_N_Beta; cd03057" /db_xref="CDD:48606" misc_feature complement(order(272387..272389,272399..272401, 272546..272551,272561..272563,272567..272569, 272582..272587)) /locus_tag="Alide2_0239" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature complement(order(272414..272419,272453..272458, 272576..272578)) /locus_tag="Alide2_0239" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48606" misc_feature complement(order(272387..272389,272396..272398, 272411..272413,272417..272422,272456..272458)) /locus_tag="Alide2_0239" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature complement(272006..272350) /locus_tag="Alide2_0239" /note="GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_C_Beta; cd03188" /db_xref="CDD:48115" misc_feature complement(order(272210..272212,272222..272224, 272231..272233,272267..272269,272294..272296, 272306..272308,272318..272320,272327..272329, 272336..272341,272348..272350)) /locus_tag="Alide2_0239" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature complement(order(272009..272011,272021..272023, 272027..272029,272099..272101,272111..272113, 272132..272134,272297..272299,272342..272344)) /locus_tag="Alide2_0239" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature complement(order(272090..272092,272099..272101, 272108..272110,272276..272278,272282..272287, 272294..272299,272309..272311)) /locus_tag="Alide2_0239" /note="substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48115" gene 272745..274127 /locus_tag="Alide2_0240" /db_xref="GeneID:10481256" CDS 272745..274127 /locus_tag="Alide2_0240" /inference="protein motif:TFAM:TIGR00416" /note="TIGRFAM: DNA repair protein RadA; PFAM: Circadian clock protein KaiC/DNA repair protein RadA; KEGG: dia:Dtpsy_0199 DNA repair protein RadA; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="DNA repair protein RadA" /protein_id="YP_004386186.1" /db_xref="GI:330822883" /db_xref="GO:0003684" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004504" /db_xref="InterPro:IPR014774" /db_xref="GeneID:10481256" /translation="MAKDKTLYSCSECGASSPRWLGKCPGCGAWNTLIETVPDAGPGK NRLSGAGQYAGLAQAQSVMPLAAIEATEVARTPSGIEELDRVLGGGVVEGGVVLIGGD PGIGKSTLLLQAMDALQRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQLE KILATIEATQPAVAVIDSIQTIYSDQLTSAPGSVAQVRECAAHLTRLAKATGIAVVLV GHVTKEGALAGPRVLEHMVDTVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERG LKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPLLVEIQALVDGGGPSPRRLSVGLER DRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKG FIAFGEVGLAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIPGLEIHAVERVD EAMAAVRGLG" misc_feature 272745..274121 /locus_tag="Alide2_0240" /note="DNA repair protein RadA; Provisional; Region: PRK11823" /db_xref="CDD:183326" misc_feature 272766..273893 /locus_tag="Alide2_0240" /note="Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121" /db_xref="CDD:29987" misc_feature 273045..273068 /locus_tag="Alide2_0240" /note="Walker A motif/ATP binding site; other site" /db_xref="CDD:29987" misc_feature order(273048..273050,273060..273068,273123..273125, 273129..273131,273273..273278) /locus_tag="Alide2_0240" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29987" misc_feature 273264..273275 /locus_tag="Alide2_0240" /note="Walker B motif; other site" /db_xref="CDD:29987" misc_feature <273852..274097 /locus_tag="Alide2_0240" /note="Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362" /db_xref="CDD:191262" gene complement(274131..275117) /locus_tag="Alide2_0241" /db_xref="GeneID:10481257" CDS complement(274131..275117) /locus_tag="Alide2_0241" /inference="similar to AA sequence:KEGG:Rmet_1769" /note="KEGG: rme:Rmet_1769 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386187.1" /db_xref="GI:330822884" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481257" /translation="MTTSSRRHAVLAGALAALALACGPAAQAQEGDFTRIVVGFAPGG AADSLARIYAEQLRQDGLGNVLVENKPGASSRLALDYVKKAPADGKTVFIGPSPMFTI FPLTYKKLSYDPDKDLVPVALLTDVPTVIATAVNAPYKTMDQYVQWLKQHPAQGSLGL ASIGSAGHLGAFALSKELGLSVTPTPYRGATPMLVDVVSGNVSMGWDAVASMMPLYRG NKLHFLGVSGTRRIKALPEVPTAFEQGYKQFEYATSWYGAYVSGATPEPVKARLQEAF IKASRNPATAARLEDLGLEVVGKSGAEARERMLKERAAWSPIVKASGFEAQD" sig_peptide complement(275031..275117) /locus_tag="Alide2_0241" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.984 at residue 29" misc_feature complement(274149..274970) /locus_tag="Alide2_0241" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(275142..276566) /locus_tag="Alide2_0242" /db_xref="GeneID:10481258" CDS complement(275142..276566) /locus_tag="Alide2_0242" /inference="protein motif:PFAM:PF01425" /note="PFAM: Amidase; KEGG: reh:H16_A1882 Asp-tRNA Asn / Glu-tRNA Gln amidotransferase A subunit or related amidase" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_004386188.1" /db_xref="GI:330822885" /db_xref="GO:0005524" /db_xref="InterPro:IPR000120" /db_xref="GeneID:10481258" /translation="MPPELWKWPAAELARAIRGRHISPVEATTAILAHMAAQQPRLNC FITVCADQALAQARAAEGALMRGDALGALHGVPFSVKDIVNTRDVATTFGALPLRGNV PAEDAVSVARLRRAGAILIGKTTTPEFGSKGFTDAPLFGATPNAWSPRHTCGGSSGGA AVAVAAGMAPLAIATDGGGSTRIPAACNGVVGIKQTIGVVPHSQALDLFGNQTYVTPT ARTVLDTALMLDAMAGPHPCDPWSQGRAAVDHVQAVRAARDLRGKRFRYNVAPHGRRV SAQVEQAFRQALLHIESLGGSVEPFEAQLDIEPLWRTVNHTVWRARFAPLVQQHGDAL SATFRRQIESAQDYSALDYQNAMFARSRLFHTVQGWLDDADFLVMPTLTRTALPLGTD IFDRMEIDGAEMGDIRANWYPWTMPFNMTGHPAVSIPCGFDSERLPVGLQIVAPMFCD AQMLQAAACLEASFNLLQAWPDMS" misc_feature complement(275148..276539) /locus_tag="Alide2_0242" /note="putative amidase; Provisional; Region: PRK06169" /db_xref="CDD:180437" misc_feature complement(275205..276491) /locus_tag="Alide2_0242" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene 276732..277148 /locus_tag="Alide2_0243" /db_xref="GeneID:10481259" CDS 276732..277148 /locus_tag="Alide2_0243" /inference="similar to AA sequence:KEGG:Ajs_0181" /note="KEGG: ajs:Ajs_0181 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386189.1" /db_xref="GI:330822886" /db_xref="GeneID:10481259" /translation="MNLRKIFIPLGIVALAIAGYRAYGLQGILTVSGGLVMWGLLHYT RLMNVMQKARNNPIGYVGSAVMLNARLKSGVNLMHVVAMTRALGEQLSAEGQEPEVYR WTDGTQSHVTCEFVNGRLVRWNLVRPAPGEDPAGES" sig_peptide 276732..276800 /locus_tag="Alide2_0243" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.621) with cleavage site probability 0.518 at residue 23" gene 277193..278131 /locus_tag="Alide2_0244" /db_xref="GeneID:10481260" CDS 277193..278131 /locus_tag="Alide2_0244" /EC_number="2.6.1.42" /inference="protein motif:TFAM:TIGR01122" /note="TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: ajs:Ajs_0182 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV" /codon_start=1 /transl_table=11 /product="branched-chain amino acid aminotransferase" /protein_id="YP_004386190.1" /db_xref="GI:330822887" /db_xref="GO:0004084" /db_xref="InterPro:IPR001544" /db_xref="InterPro:IPR005785" /db_xref="GeneID:10481260" /translation="MSPVVPSMADRDGKIWMDGQMVDWRDAKIHVLTHSLHYGCGAFE GVRAYKTEQGTAIFRLQEHTDRLFNSAKILRMKLPFTKEEVNEAQRAVVRANKLESCY LRPLTWIGSEKLGVSPKGNKIHMIVAAWAWGAYLGEEGMARGIRVKTSSFTRHHVNIT MTQAKASSNYTNSILANMEATDDGYDEALLLDSAGFVSEGSGENVFIIKDGVVYTPDL SAGALNGITRNTVLHICKDLGLELVQKRITRDEVYIADEAFFSGTAAEITPIRELDRV QIGGGSRGPLTEKIQTAFFDIVNGRNPKYAHWLTKV" misc_feature 277235..278074 /locus_tag="Alide2_0244" /note="branched-chain amino acid aminotransferase; Provisional; Region: PRK12479" /db_xref="CDD:183549" misc_feature 277274..278092 /locus_tag="Alide2_0244" /note="BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-...; Region: BCAT_beta_family; cd01557" /db_xref="CDD:29568" misc_feature order(277274..277288,277295..277309,277313..277315, 277319..277321,277409..277411,277502..277504, 277508..277510,277526..277534,277544..277546, 277568..277570,277691..277693,277706..277708, 277712..277714,277724..277726,277766..277768) /locus_tag="Alide2_0244" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29568" misc_feature order(277304..277306,277319..277321,277388..277390, 277538..277540,277685..277687,277700..277702, 277787..277789,277868..277873,277979..277981) /locus_tag="Alide2_0244" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:29568" misc_feature 277685..277687 /locus_tag="Alide2_0244" /note="catalytic residue [active]" /db_xref="CDD:29568" gene 278139..278345 /locus_tag="Alide2_0245" /db_xref="GeneID:10481261" CDS 278139..278345 /locus_tag="Alide2_0245" /inference="similar to AA sequence:KEGG:Ajs_0183" /note="KEGG: ajs:Ajs_0183 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386191.1" /db_xref="GI:330822888" /db_xref="InterPro:IPR019401" /db_xref="GeneID:10481261" /translation="MPQAIVELLAKDLDGNGGVHCPNPKADMKLWNGHPRVFLEIAHQ GQAQCPYCGTLYRLKAGEIVHAGH" misc_feature <278193..278312 /locus_tag="Alide2_0245" /note="Zinc-finger domain; Region: zf-CHCC; cl01821" /db_xref="CDD:154607" gene 278420..279772 /locus_tag="Alide2_0246" /db_xref="GeneID:10481262" CDS 278420..279772 /locus_tag="Alide2_0246" /inference="protein motif:PFAM:PF04932" /note="PFAM: O-antigen ligase-related; KEGG: ajs:Ajs_0184 O-antigen polymerase" /codon_start=1 /transl_table=11 /product="O-antigen polymerase" /protein_id="YP_004386192.1" /db_xref="GI:330822889" /db_xref="InterPro:IPR007016" /db_xref="GeneID:10481262" /translation="MTTLESFLGAPPWPRQLATAALFLLPALALTVQSGYSYGAALLL IGALCSLRRWPFAAQDRWTWGFAVAMGGMGVFWWLLANPQESLGGTWDRPSKFALGIA CLLFVSPTAPRPRAQFWGLLAGCLGAGAVALWQVHVEGAPRASGFPSGKTNAIQWGNL ALLLGTMLAVQAITLREHLGRAALALAGLAALMALNASVLSLSRGGWLALLLASPVGL YLLWRFDRRALWRMLGGAAVVLAVLGAANHAVLAERWNVMEKEMLVYDAEREAGNSVG QRLEHWRFAWEVGLEKPIFGWGMRGYLEEKEKRVAAGQYEPSIVEYIYTHNEPLDMFV KAGIVGVAWLLLFYAVPLCMFWPTRARVAAYARQGAEVRAQMLALRLGGVCIPLLYAG FGMTQVFFAHNSGIMFYLFMTMLTWAAVLGMDAQYAGGAGASSSSLPRRGPSSRQSRA " misc_feature 279014..279445 /locus_tag="Alide2_0246" /note="O-Antigen ligase; Region: Wzy_C; cl04850" /db_xref="CDD:194980" misc_feature <279239..279679 /locus_tag="Alide2_0246" /note="Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]; Region: RfaL; COG3307" /db_xref="CDD:33116" gene 279765..280880 /locus_tag="Alide2_0247" /db_xref="GeneID:10481263" CDS 279765..280880 /locus_tag="Alide2_0247" /inference="protein motif:PFAM:PF00534" /note="PFAM: Glycosyl transferase, group 1; KEGG: ajs:Ajs_0185 glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="group 1 glycosyl transferase" /protein_id="YP_004386193.1" /db_xref="GI:330822890" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10481263" /translation="MPEIARRPRVLHFVTGGFSGATQVAVDLVRAHALSGRCEALLVL RRKRHTRGERVQALRDEGLAVETVAGWAHAATVWQLAAVCRRWRPDVLVAHGFSEHLW GRYAGLVAGVPRLVQVEHNSRERYTAWRLRQALWLAGRTEAIVGVSEGVRQSLLARGF PPGKTVAIPNGIPLAPYDCADGHDWAGRVPGIVMAARFARQKDHATLLRAVALLRQQG LTPPVKLAGGGKAGARRAARRLCTELGLDGQVEFLGHCKDMPGLLMGHRICVLSTHYE GMPLSLIEGMAAGCAVVGSRVVGVQEVIEDGRNGLLAGHADPRSLADALERLLTRDDE ARRMARAARDDALRLYGLQTMTARYEDLLLRGLEHPR" misc_feature 279789..280754 /locus_tag="Alide2_0247" /note="This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core; Region: GT1_WabH_like; cd03811" /db_xref="CDD:99982" misc_feature 279792..280868 /locus_tag="Alide2_0247" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature order(279822..279824,280347..280355,280539..280541, 280605..280607) /locus_tag="Alide2_0247" /note="putative ADP-binding pocket [chemical binding]; other site" /db_xref="CDD:99982" gene 280877..281923 /locus_tag="Alide2_0248" /db_xref="GeneID:10481264" CDS 280877..281923 /locus_tag="Alide2_0248" /inference="protein motif:PFAM:PF00535" /note="PFAM: Glycosyl transferase, family 2; KEGG: ajs:Ajs_0186 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="family 2 glycosyl transferase" /protein_id="YP_004386194.1" /db_xref="GI:330822891" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10481264" /translation="MKDADAPWLSILVPVYDVQDYLAECIGSVMEQLAQLPDGGAGVE VLVLDDASTDGSRALMDALAARWPGRLALMHHARNQGLSAARNTMIGAARGEYLWFLD SDDKLLPGALAGLQAAVRRHAPDAVLCDFAVWRERPRLKHRLRGEAHRATFAGPAGGP FHDRAALLAGLFMTGQLHAWSKITRRALWGADLRFPPGRYFEDMATMPLALLRARSHC YLPEPWVAYRQRGSSILATMTLPKALDQSQALGAFAQALRAAEAAGDMPAHADLHFAL AHQCARSLTGAARFLERAALPVAEREAAARRLRDDFAAASPLAAEALLRAYARRGWWL RAHRLRRAWSTVSA" misc_feature 280901..>281533 /locus_tag="Alide2_0248" /note="Predicted glycosyltransferases [General function prediction only]; Region: COG1216" /db_xref="CDD:31409" misc_feature 280907..>281191 /locus_tag="Alide2_0248" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761" /db_xref="CDD:132997" misc_feature order(280916..280918,280922..280924,281018..281020, 281180..281182,281186..281188) /locus_tag="Alide2_0248" /note="active site" /db_xref="CDD:132997" gene 281920..282894 /locus_tag="Alide2_0249" /db_xref="GeneID:10481265" CDS 281920..282894 /locus_tag="Alide2_0249" /inference="similar to AA sequence:KEGG:Ajs_0187" /note="KEGG: ajs:Ajs_0187 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386195.1" /db_xref="GI:330822892" /db_xref="GeneID:10481265" /translation="MTSATPSLRWKHRGELWLARWLRRWFRLRPLWLEGAPAPEFTLY STGAARAPAAAIPRIIWSYWQGGTPPLLVRRCFDNWRRLHPHFEIRILDERGALQYLP AIPRALDGASAAKRADWIRLELLRRHGGIWLDASTILTRPLDWVLAEQARTGADFVGY YLQQYTSAPDRPVVENWFMAAPPASPFIEDLQREFTGEVIVRSGEEYVAHLRAQGLYE RALQRIDMPAYLSMHLALQVVLLRGGAYRLCLARAEAGPYLYHVLGRWRRTGLKLRLL FARVCGPLPPLIKLRSPDRRRLDDYLARGLYLPESVAGRWLMGDEVAR" misc_feature 282127..282369 /locus_tag="Alide2_0249" /note="Glycosyltransferase sugar-binding region containing DXD motif; Region: Gly_transf_sug; pfam04488" /db_xref="CDD:191003" gene complement(282963..284027) /locus_tag="Alide2_0250" /db_xref="GeneID:10481266" CDS complement(282963..284027) /locus_tag="Alide2_0250" /inference="protein motif:PFAM:PF03060" /note="PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase, NPD" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase NPD" /protein_id="YP_004386196.1" /db_xref="GI:330822893" /db_xref="GO:0018580" /db_xref="InterPro:IPR004136" /db_xref="GeneID:10481266" /translation="MTTTLLQRLNISLPIIQGPMTGSDTPQLAAAVSQAGGLGMLGCG MRSPEAMAQAAAAVRAATGKPFGMNLFVLETPRPDAAEVAAAMDRLAPLYARFGLPPE APARWCEDFAAQFDALIAARPAVASFTFGILSAAQVRRIQSEAGSFVIGTATTPAEAL AWQEVGADAVVASGMEAGGHRGTFQGDWEGSLIGTLPLVPTCVDTLKIPVIAAGGIMD GRGIAAAQALGAQAVQMGTAFLACPESSIVPAQRAAMAAAQATDTRLTRIFSGRPARG ILNQAMRSLQPQEADIPAYPVQNALMGPIRRAAAQAGDAGHIALWAGQGVGAARVLPA GELVALLAQEWRAALQRLQT" misc_feature complement(282996..284021) /locus_tag="Alide2_0250" /note="Nitronate monooxygenase; Region: NMO; pfam03060" /db_xref="CDD:145943" misc_feature complement(283191..283997) /locus_tag="Alide2_0250" /note="2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin...; Region: NPD_like; cd04730" /db_xref="CDD:73392" misc_feature complement(order(283317..283328,283383..283391, 283494..283499,283509..283511,283572..283574, 283641..283643,283815..283817,283968..283973)) /locus_tag="Alide2_0250" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(283488..283493) /locus_tag="Alide2_0250" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(283488..283490) /locus_tag="Alide2_0250" /note="putative catalytic residue [active]" /db_xref="CDD:73392" gene complement(284024..284890) /locus_tag="Alide2_0251" /db_xref="GeneID:10481267" CDS complement(284024..284890) /locus_tag="Alide2_0251" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0189 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386197.1" /db_xref="GI:330822894" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481267" /translation="MDLVALDIFRTVAAEGSVTRAAERLGRAQSNATTRVQQLEEDLG VPLFLREGRRMRLTPEGETLLAYADRLLALAEEARQALHPGAPTGRLRIGAMESTAAA RLPGPLARLHAQWPALSLELRTAPSRQLADQVLAHQLDCALVAWPPPGLEADAPIERT PVFAESLLLALPASHPPAATPADLRVHLLAAFAQGCTYRRIGEDWMRQGGAPVEVLEL ASYPAILACVAAGRCAGVVPQSVLQLLRTPPPLRWVPLGTCDTMLLHRPGYATPALAA LQSALLSHQDAP" misc_feature complement(284705..284884) /locus_tag="Alide2_0251" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(284075..284623) /locus_tag="Alide2_0251" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(284201..284206,284210..284215, 284231..284248,284519..284539,284543..284545, 284555..284557,284564..284569,284573..284578)) /locus_tag="Alide2_0251" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 284946..286175 /locus_tag="Alide2_0252" /db_xref="GeneID:10481268" CDS 284946..286175 /locus_tag="Alide2_0252" /inference="protein motif:PFAM:PF06779" /note="PFAM: Domain of unknown function DUF1228; KEGG: dia:Dtpsy_0209 protein of unknown function DUF1228" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386198.1" /db_xref="GI:330822895" /db_xref="InterPro:IPR010645" /db_xref="GeneID:10481268" /translation="MRATPSWSEQPRAVTWAGMLALAVAMGVGRFAFTPLLPMMLHDG VLTLAEGSWLATANYVGYLAGALACMALPWVAPAVYERWHPARLARAGLVATVLLTVA MALPLPGAWPLLRFAAGVASAFVLLNVAAWCMVRLTALGRPSMGGLVFCGPGVGIALT GLAASAMVAAQWRASTGWVVCGLLSVLLCAVVWPVVRGRAAQARAGAPHPHAPARAPG GGTVLARGVHALAYGLAGLGYIVTATFLPVIARAALPAGSLWPDLFWPMFGVGVTVGA ALSTRANAAWDRRWLLCATYGMQALGIALGLWWPTPAGFALSSCLVGLPFTAITFYGL QEARRLWPQSADSFASLITAVYGLGQIMGPPMVAWLLARGGQAQGFAQGLALAAGALV VGAAMYAASAWRWPLVR" misc_feature 285012..285287 /locus_tag="Alide2_0252" /note="Protein of unknown function (DUF1228); Region: DUF1228; pfam06779" /db_xref="CDD:115437" gene complement(286179..286898) /locus_tag="Alide2_0253" /db_xref="GeneID:10481269" CDS complement(286179..286898) /locus_tag="Alide2_0253" /inference="protein motif:PFAM:PF03473" /note="PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: dia:Dtpsy_0210 MOSC domain containing protein" /codon_start=1 /transl_table=11 /product="MOSC domain-containing protein" /protein_id="YP_004386199.1" /db_xref="GI:330822896" /db_xref="GO:0003824" /db_xref="GO:0030151" /db_xref="GO:0030170" /db_xref="InterPro:IPR005302" /db_xref="GeneID:10481269" /translation="MNATPPQPLGWLRAVLTGRALPYTRPGSRSAIAKQARGGPVGAG PLGLDGDEQGDPRVHGGPDKAVHCYAWAQYAPWRQELAGNAAAQALLEQPGAFGENFS LDDLQESQVCIADQWQIGSARFEVSQGRQPCWKLNDRFGVPDMALRVQSSLRTGWYLR VLQGGQVQAGDQVWLLARPYPEWPITRLLRAIAERDCTPATLRQILALPLPPSWHKLF SCRLENASAEDWTSRLVGRQP" misc_feature complement(286224..286865) /locus_tag="Alide2_0253" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2258" /db_xref="CDD:32439" misc_feature complement(286380..286763) /locus_tag="Alide2_0253" /note="MOSC domain; Region: MOSC; pfam03473" /db_xref="CDD:146227" gene complement(286895..287455) /locus_tag="Alide2_0254" /db_xref="GeneID:10481270" CDS complement(286895..287455) /locus_tag="Alide2_0254" /inference="protein motif:PFAM:PF00578" /note="PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: dia:Dtpsy_0211 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen" /protein_id="YP_004386200.1" /db_xref="GI:330822897" /db_xref="GO:0016209" /db_xref="GO:0016491" /db_xref="InterPro:IPR000866" /db_xref="GeneID:10481270" /translation="MNGTYHPPAPPLQVAQWFNTPQPLTLKALRGRVVVLHAFQMLCP GCVEHGIPQARRVHEAFPQDRLVVIGLHTVFEHHDVQGGAAALQAFMHEYRLRFPIGL DQPDPQRTIPRTMHSLALQGTPSLVVLDPQGRVRLHHFGHLDDLRLGTLLGQLLAEPV PAAATPAQAAAGCDDNGCPRPDMPPP" misc_feature complement(287033..287410) /locus_tag="Alide2_0254" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:193797" gene complement(287474..287968) /locus_tag="Alide2_0255" /db_xref="GeneID:10481271" CDS complement(287474..287968) /locus_tag="Alide2_0255" /inference="protein motif:PFAM:PF08327" /note="PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: oca:OCAR_5014 activator of HSP90 ATPase 1 family protein" /codon_start=1 /transl_table=11 /product="Activator of Hsp90 ATPase 1 family protein" /protein_id="YP_004386201.1" /db_xref="GI:330822898" /db_xref="InterPro:IPR013538" /db_xref="GeneID:10481271" /translation="MSTADIGTLQRTATGFEGRLTRRLDHGADAVWRMLTDPQAMAQW LAPGNIELCTGGAVRIDFVDSGIVIDSRVTAFEAQRVLAYSWSSGNEPERPMRWELAP AGEGTALTLTLQIPAGEDAAKACAGFEGHLDMLAAALEGVPIKFPFERFLQARSAYNA QLAG" misc_feature complement(287495..287950) /locus_tag="Alide2_0255" /note="Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; Region: SRPBCC_CalC_Aha1-like_6; cd08899" /db_xref="CDD:176908" misc_feature complement(order(287564..287566,287573..287581, 287585..287611,287621..287623,287627..287629, 287633..287635,287639..287641,287669..287671, 287675..287677,287681..287686,287714..287719, 287723..287725,287741..287743,287750..287752, 287756..287761,287765..287767,287783..287785, 287789..287791,287795..287797,287801..287803, 287825..287827,287846..287848,287861..287866, 287870..287878,287903..287905,287909..287911, 287915..287917)) /locus_tag="Alide2_0255" /note="putative hydrophobic ligand binding site [chemical binding]; other site" /db_xref="CDD:176908" gene complement(288068..288529) /locus_tag="Alide2_0256" /db_xref="GeneID:10481272" CDS complement(288068..288529) /locus_tag="Alide2_0256" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC-like dehydratase; KEGG: dac:Daci_0013 dehydratase" /codon_start=1 /transl_table=11 /product="MaoC domain-containing protein dehydratase" /protein_id="YP_004386202.1" /db_xref="GI:330822899" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10481272" /translation="MIKHQMCPQRYFEDFELGEQFLLPSRTMTDALFAAFQLASGDNH PVHYDVEYCRAHGMPHMLAHGYQVVIQTAAGAGLFPHMVEESLKGFLEQGSRFLNPVF VGDTLYCTLTVSELRPGNTTGVITLGTEVKNQKGEVVMDGFQKYLLRKRRP" misc_feature complement(288104..288475) /locus_tag="Alide2_0256" /note="(R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel...; Region: R_hydratase_like; cd03441" /db_xref="CDD:48036" misc_feature complement(order(288332..288337,288344..288346, 288389..288391,288398..288400,288404..288406, 288419..288421)) /locus_tag="Alide2_0256" /note="active site" /db_xref="CDD:48036" misc_feature complement(order(288335..288337,288389..288391, 288398..288400,288404..288406)) /locus_tag="Alide2_0256" /note="catalytic site [active]" /db_xref="CDD:48036" gene complement(288551..289522) /locus_tag="Alide2_0257" /db_xref="GeneID:10481273" CDS complement(288551..289522) /locus_tag="Alide2_0257" /inference="similar to AA sequence:KEGG:Daci_0012" /note="KEGG: dac:Daci_0012 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386203.1" /db_xref="GI:330822900" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481273" /translation="MMTRRSIHTAIVGALALVSAAAHAQSYPARPVKLIVPYAAGGPT DTFARALADAWGKKLGQVLVVENRTGAGTLVGTDAVAKAQPDGYTILLTTVAHAVNPS IHDKMPYRTVEDFAPVGMAAKAPLVIVVNKNFPAQNLQEFIGYIKDHPGKVNYGSAGV GSAPHLGAELLNYMTGSKTEHVPYRGSAPAMQDVIGGHLAFMMDSAPTGLAQVKAGTV RLIATTMGQRLPQTPDTPAVAEVVPKYEAYTWNAVFAPAQTPAPVIAKLNTSLKEALQ DPGLQKQAYDMGLVLEKNPQPQALAAFLGGELAKWGQVAKAAKMTAN" sig_peptide complement(289448..289522) /locus_tag="Alide2_0257" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" misc_feature complement(288566..289450) /locus_tag="Alide2_0257" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(288569..289381) /locus_tag="Alide2_0257" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 289676..290605 /locus_tag="Alide2_0258" /db_xref="GeneID:10481274" CDS 289676..290605 /locus_tag="Alide2_0258" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0011 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386204.1" /db_xref="GI:330822901" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481274" /translation="MRYELTDLKVFLAIAAARSLSGGAADMHLTAPSASYRLKNLEQA LGTALFERTSKGMQLTPAGLTVRRYAEAILGNVERLGAEMQRHTDGVVGHIRVFANSS TLNGLAPALSRFLAAYPNVNVELEEHLSATVVKAVQDDAADIGLAAGDIDFGGLTAIP YARDELVFVTPPGHPLAEFPIVPLDMALAHDLVGIGKKSSNFVFLEAMANKLGVAPRV RVHAPSFADVLACVKEGVGISLVPYSIAAAFIQSGQVQKVRVDEPWAQRQQCIVLKSP QSLLPHEQAFVSYVVKTNASALADAAAPAIRGS" misc_feature 289685..290545 /locus_tag="Alide2_0258" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 289688..289864 /locus_tag="Alide2_0258" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 289955..290542 /locus_tag="Alide2_0258" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(289997..290002,290006..290011,290018..290020, 290030..290032,290036..290056,290330..290347, 290363..290368,290372..290377) /locus_tag="Alide2_0258" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 290730..291896 /locus_tag="Alide2_0259" /db_xref="GeneID:10481275" CDS 290730..291896 /locus_tag="Alide2_0259" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: axy:AXYL_02637 CoA-transferase family III family protein 17; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386205.1" /db_xref="GI:330822902" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481275" /translation="MTTPAASTPPTRPLQGITVLALEHAVAAPFASRQLADLGARVIK IERPGDGDFARGYDSTVMGQSSFFVWCNRGKESLALDLKQPGSMPVLDRLLERCDVFI QNLAPGAAARMGLDYDSLREKYPRLIVCVISGYGEGGPYSDKKAYDLLVQAASGLISV TGTPDAPARTGISIADISAGMYAYSGILSALLQRGHTGQGMRVEVSMLEALTEWMSYP LNFSHYGGSAPVRSGLTHPTIAPYGQYRAGDGKSVIFGLQNDREWADFCRAVLQRPGM ADDPRFASNLLRVSNRAELDAILEECFDSLTREQLLQRLDEGGIANAPLAEPDEVWTH PQFQARRRWREVATPQGAIQALLPPATLSGTEAAMGSVPALGEHTDAILKELGY" misc_feature 290769..291893 /locus_tag="Alide2_0259" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(291914..293125) /locus_tag="Alide2_0260" /db_xref="GeneID:10481276" CDS complement(291914..293125) /locus_tag="Alide2_0260" /inference="protein motif:PFAM:PF02518" /note="KEGG: dia:Dtpsy_0212 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_004386206.1" /db_xref="GI:330822903" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="GeneID:10481276" /translation="MSLSLFSPFSRRLYLRIWLAVVGGVLVFAFAVGLAWRWAAEQNQ HQLPTRGIVITDAQGRTLVDGTGIRQRLDPGEGIHYRIEADDGAVYEMRLSPRTPRMR PDEHGPAAWFRPPLGFLWMLALVGIAVTVGVFPIIRRLLQRLEQLQRSVQRFGEGDLS VRVAEQGHDEVADLARQFNAAAARIETLVQSHKSLLANASHELRSPLTRIRMGLELMR GGAPSPASRAEIERNIAELDQLVDEILLASRLDAGAADVGTVEPVDLVGLAVEEGVRV DAELQVGDGAPVEVPAVSKLLRRAVRNLLENARRYSQGAITLAVTREGPSAVLRVCDH GPGVPPAQRERIFEPFYRLPGASERSGGVGLGLALVRSIAQRHGGSVHCEDRPDGAAG ACFVLSLPATR" misc_feature complement(292556..>292666) /locus_tag="Alide2_0260" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(292379..292558) /locus_tag="Alide2_0260" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(292394..292396,292406..292408, 292415..292417,292427..292429,292436..292438, 292487..292489,292496..292498,292508..292510, 292517..292519,292529..292531,292541..292543)) /locus_tag="Alide2_0260" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(292523..292525) /locus_tag="Alide2_0260" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(291929..292237) /locus_tag="Alide2_0260" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(291941..291943,291947..291952, 291971..291973,291977..291979,292025..292036, 292112..292117,292121..292123,292127..292129, 292133..292135,292196..292198,292205..292207, 292217..292219)) /locus_tag="Alide2_0260" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(292205..292207) /locus_tag="Alide2_0260" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(292028..292030,292034..292036, 292115..292117,292121..292123)) /locus_tag="Alide2_0260" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(293135..293845) /locus_tag="Alide2_0261" /db_xref="GeneID:10481277" CDS complement(293135..293845) /locus_tag="Alide2_0261" /inference="protein motif:PFAM:PF00072" /note="KEGG: ajs:Ajs_0194 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal" /codon_start=1 /transl_table=11 /product="winged helix family two component transcriptional regulator" /protein_id="YP_004386207.1" /db_xref="GI:330822904" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10481277" /translation="MNSQLLMIEDDHRLAQMVGEYLGQSGLQVTHMADGTSGLAQLQG SELPDLVILDLMLPDMDGLEVCRRIRALPGAAAQVPVLMLTAKGDPMDRVIGLEIGAD DYLPKPFEPRELLARIRAILRRREAGAQPPANHLLRFGSLEIDRDARTITVGGEPAEL TSYQFDLLVTMAERAGRVLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKNP RRILTVRGVGYVFAKQQD" misc_feature complement(293150..293833) /locus_tag="Alide2_0261" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature complement(293513..293830) /locus_tag="Alide2_0261" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(293522..293527,293534..293536, 293591..293593,293660..293662,293684..293686, 293816..293821)) /locus_tag="Alide2_0261" /note="active site" /db_xref="CDD:29071" misc_feature complement(293684..293686) /locus_tag="Alide2_0261" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(293660..293668,293672..293677)) /locus_tag="Alide2_0261" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(293519..293527) /locus_tag="Alide2_0261" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(293153..293437) /locus_tag="Alide2_0261" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(293162..293164,293177..293179, 293213..293218,293240..293242,293249..293251, 293303..293308,293363..293365)) /locus_tag="Alide2_0261" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene complement(293941..295299) /locus_tag="Alide2_0262" /db_xref="GeneID:10481278" CDS complement(293941..295299) /locus_tag="Alide2_0262" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0214 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004386208.1" /db_xref="GI:330822905" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10481278" /translation="MVAVRIIPRMPDSSSAAPARRSWRQAWLVYLEPASLRMLALGFS AGLPLLLVLGTLSFRLREAGIDRTTIGYLSWVGLAYAFKWVWSPLVDRLPLPLLTRAL GRRRSWLLLAQGMVMAGLVGMALVDPRAKLGPMVWCALLVAFGSATQDIALDAFRIES ADADRQAALAATYQTGYRLAMIWAGAGVLWVAARAEVAGLAGYQAGAWAAAYLVMAAS MLVGTATVLLSPEPTPRPLAPARNLGEWLRGAVVEPFADFIRRYRWQAALILALIAVY RISDVVMGIMANPFYVDMGYTKDEVAAVTKVFGVVMTLAGAFVGGVLSMRLGVMRVLM LGAVLSALSNLLFAWLGQRGHDLTGLVLVVSADNLAGGIASAAFIAYLSGLTNVQYSA TQYALFSSMMLLLPKWLAGFSGRFVDAHGYAAFFTGTALLGLPVLLLVALAARAKTAS SV" misc_feature complement(294088..295122) /locus_tag="Alide2_0262" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cl11420" /db_xref="CDD:196224" gene 295309..295974 /locus_tag="Alide2_0263" /db_xref="GeneID:10481279" CDS 295309..295974 /locus_tag="Alide2_0263" /inference="protein motif:PFAM:PF07883" /note="KEGG: dia:Dtpsy_0215 transcriptional regulator, AraC family; PFAM: Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain" /codon_start=1 /transl_table=11 /product="cupin 2 barrel domain-containing protein" /protein_id="YP_004386209.1" /db_xref="GI:330822906" /db_xref="InterPro:IPR013096" /db_xref="InterPro:IPR018060" /db_xref="GeneID:10481279" /translation="MPSLVHPVASVRRYAGEHQAHAHEHAQVLYALEGRMELEVAGRA AFVDTACGLVVPAGVEHGFLARPGTRMFVIDAPPQAGVDRVRRFAVPPGARPADAAGQ LALLLHAPRVLARRGMDLALLQSRVDAALHEPWPTARMAALFHLSAPRFHARLVELTG RTPQAWLRARRLDAAERALARGLPLEATALRVGYASASALAYALRRERGTGARALRGF QAK" misc_feature <295390..295587 /locus_tag="Alide2_0263" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 296088..296981 /locus_tag="Alide2_0264" /db_xref="GeneID:10481280" CDS 296088..296981 /locus_tag="Alide2_0264" /inference="protein motif:PFAM:PF00892" /note="PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0201 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386210.1" /db_xref="GI:330822907" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10481280" /translation="MNTASLRSIAMVLLAAMLWGTTGTAQSLAPATLSPYWVGALRLG FASAFFAVLAWPALRRGAWRGLRGAALPLAALCVAAYNLSFFAGVKASGVALGTALAI GSGPVWAGLLQTVAQRRWPAPAWWLGTLLGVAGGVAMALDGGADARAPLSGIALCLLA GLSYAGYALLNKRLVARAGPAMVNLAVFGGAGLLSLPVALLLGGVPTPSAATWGVVLY LGLAATGLAYLLFSAALRHISGATGVTLALAEPVTAFALAILVVGERPSAMAFWGLGG VLAGLLLVIWSELRAAPKLGA" sig_peptide 296088..296171 /locus_tag="Alide2_0264" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.490 at residue 28" gene 296978..297832 /locus_tag="Alide2_0265" /db_xref="GeneID:10481281" CDS 296978..297832 /locus_tag="Alide2_0265" /inference="protein motif:PFAM:PF01435" /note="PFAM: Peptidase M48; KEGG: ajs:Ajs_0203 peptidase M48, Ste24p" /codon_start=1 /transl_table=11 /product="peptidase M48 Ste24p" /protein_id="YP_004386211.1" /db_xref="GI:330822908" /db_xref="GO:0004222" /db_xref="InterPro:IPR001915" /db_xref="GeneID:10481281" /translation="MMIETSSDAPGCRCCAGGIWNARRVFVLAAAGAAALPAVAQVDV GSASGLRKLVPAEQLETSATQQYGQMLAQAKAKGALAPDGHPQLVKLRAIARRLIPHA AQWNSRAASWRWEVNLIGSKQINAFCMPGGKIAFYTGILDQLKLSDDEIAMVMGHEMA HALREHARSRIAKSQATSLGLSLGAQLLGLGELGNAAASLGTQLLTLKFSRGDETEAD LVGLELAARAGYNPQAAVSLWRKMGEATGSEGIGFLSTHPSGPDRIRELEQNVPRVEG LYRAARGG" misc_feature 297134..297775 /locus_tag="Alide2_0265" /note="Peptidase family M48; Region: Peptidase_M48; cl12018" /db_xref="CDD:187163" gene complement(297875..298105) /locus_tag="Alide2_0266" /pseudo /db_xref="GeneID:10481282" gene 298107..298319 /locus_tag="Alide2_0267" /pseudo /db_xref="GeneID:10481283" gene complement(298389..299144) /locus_tag="Alide2_0268" /db_xref="GeneID:10481284" CDS complement(298389..299144) /locus_tag="Alide2_0268" /inference="protein motif:PFAM:PF00392" /note="KEGG: ajs:Ajs_0204 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004386212.1" /db_xref="GI:330822909" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10481284" /translation="MAKRSALYAIAAPAPSSARTLIEHAYARLRDDIVSGQLVPGEKL RVEHLKERYGVSAGTLREAITRLASDALVVTEGQRGFRVAPITTEDLEDITNLRVQIE TEALRQSIRTGDAQWRQRVEQAFAAISAEEPIAPGRRHAWEQLNTRFHEALLSGHASP WTVHVLRLLSRHTERYRSFAMALPGCVRDVHAEHTAIFEYTMAGQDARAALALEAHIR TTPDLLIQALREGRASLPGSAAPLLEGKGLQDS" sig_peptide complement(299088..299144) /locus_tag="Alide2_0268" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.866) with cleavage site probability 0.799 at residue 19" misc_feature complement(298440..299114) /locus_tag="Alide2_0268" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature complement(298893..299087) /locus_tag="Alide2_0268" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(298902..298913,298917..298922, 298950..298952,298959..298964,298968..298982, 299001..299006,299010..299012,299079..299081, 299085..299087)) /locus_tag="Alide2_0268" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(298488..298868) /locus_tag="Alide2_0268" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene complement(299146..300852) /locus_tag="Alide2_0269" /db_xref="GeneID:10481285" CDS complement(299146..300852) /locus_tag="Alide2_0269" /inference="protein motif:PFAM:PF00158" /note="KEGG: lch:Lcho_3364 putative sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Activator of aromatic catabolism; Helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Fis family sigma54 specific transcriptional regulator" /protein_id="YP_004386213.1" /db_xref="GI:330822910" /db_xref="GO:0003700" /db_xref="GO:0005524" /db_xref="GO:0008134" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004096" /db_xref="InterPro:IPR010523" /db_xref="GeneID:10481285" /translation="MPTLPALPSDADLRRQIQFSAADGRIWLAGQRMVLMHAASLGIL RRELIHTLGPAATRRLLLRVGYASGERDAALARQLRPGADAFAMFSVGPQLHMLQGAV QVTPEKLELDAATGHFHGIFAWQQSWEVEVHVRDFGPQNVPVCWMLLGYASGYTSAFM GRTVLYKEVQCAASGHAHCRIEGRPVQDWPDGAQLAADYAPDALLDDGAPQNGPRALP AWPAPMPAEDRPEPPADALGPLIGRSAGFTAATRLLRKAAGTQVTVLLTGETGVGKER FARALHALSPRAAKPFVAVNCAALPGNLVESELFGTEKGAYTGADAARAGRFERAHGG TLFLDELGELPLSAQAKLLRVLQDGQVERLGATQPRQVDVRLVAATHVDLQDAVRAGR FRQDLYYRLNVYPIRIPPLRERQDDIEPFARHLLQRFAALHDKHIGGLTDRALHALRQ YAWPGNVREMENLIERGVILADPGQPVDAAHLFPDSAPAAAPAHTLQASGRLGEARAP ACDAALIDRLLGERLDLQALETHLIEAAVERSHGNLAAAARLLGLTRPQLSYRLNKVR DI" misc_feature complement(300511..300819) /locus_tag="Alide2_0269" /note="Activator of aromatic catabolism; Region: XylR_N; pfam06505" /db_xref="CDD:115177" misc_feature complement(300298..300483) /locus_tag="Alide2_0269" /note="V4R domain; Region: V4R; cl08369" /db_xref="CDD:158277" misc_feature complement(299179..300135) /locus_tag="Alide2_0269" /note="psp operon transcriptional activator PspF; Region: phageshock_pspF; TIGR02974" /db_xref="CDD:163093" misc_feature complement(299623..300120) /locus_tag="Alide2_0269" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(300028..300051) /locus_tag="Alide2_0269" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(299710..299712,299836..299838, 300025..300048)) /locus_tag="Alide2_0269" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(299833..299850) /locus_tag="Alide2_0269" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(299653..299655) /locus_tag="Alide2_0269" /note="arginine finger; other site" /db_xref="CDD:99707" gene 301084..301395 /locus_tag="Alide2_0270" /db_xref="GeneID:10481286" CDS 301084..301395 /locus_tag="Alide2_0270" /inference="protein motif:PFAM:PF06099" /note="PFAM: Phenol hydroxylase subunit; KEGG: avn:Avin_30760 multi-component phenol hydoxylase, assembly subunit; LapK" /codon_start=1 /transl_table=11 /product="Phenol hydroxylase subunit" /protein_id="YP_004386214.1" /db_xref="GI:330822911" /db_xref="InterPro:IPR010353" /db_xref="GeneID:10481286" /translation="MSCIGLGMRTTPPSSNDRWDLQRRYIRIVQEHGNGMVEFEFAVG EPQLYVEMVMPRAQFDDFCATQGVQPTVGRLPGQEQGSAEHEWDWNLRDARERHFRHE P" misc_feature 301126..301290 /locus_tag="Alide2_0270" /note="Phenol hydroxylase subunit; Region: Phenol_hyd_sub; pfam06099" /db_xref="CDD:147972" gene 301439..302431 /locus_tag="Alide2_0271" /db_xref="GeneID:10481287" CDS 301439..302431 /locus_tag="Alide2_0271" /EC_number="1.14.13.7" /inference="protein motif:PRIAM:1.14.13.7" /note="KEGG: azo:azo2443 phenol hydroxylase subunit P1; PFAM: Methane/phenol/toluene hydroxylase" /codon_start=1 /transl_table=11 /product="Phenol 2-monooxygenase" /protein_id="YP_004386215.1" /db_xref="GI:330822912" /db_xref="InterPro:IPR003430" /db_xref="GeneID:10481287" /translation="MQIDLRTVSITPLRQTYDHIARRLGADKPASRYIEATMDVQPQA NFHYRPTWDPEHELFDASRTRIVMQDWYALKDPRQLYYGTYAQARARLQEVAEADFEF VESRGLAERFDDTARRTALDFYVPLRHVAWGANMNGAYQCAYGHGTAITQPCLYAGMD QLGIAQYLTRLGLLLGNQGDLEAGKQAWLEAPAWQGLRRVVEDTWVLKDWFELYVAQN VALDGILFGLAYREVDAALSEQAGPTVSMLTRFQAEWFQDANKWVDAVIKTAAAESAE NQALLGQWYAHWRGRVQEALAPVARLALGDAGDAALARAVAAVDARMHKSGLAV" misc_feature 301496..302332 /locus_tag="Alide2_0271" /note="Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain; Region: AAMH_B; cd01058" /db_xref="CDD:153116" misc_feature order(301697..301702,301709..301714,301718..301723, 301730..301735,301751..301756,301760..301762, 302117..302119,302129..302131,302138..302140, 302150..302152,302165..302167,302177..302179, 302186..302191,302195..302197,302204..302209, 302216..302218) /locus_tag="Alide2_0271" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153116" gene 302454..302723 /locus_tag="Alide2_0272" /db_xref="GeneID:10481288" CDS 302454..302723 /locus_tag="Alide2_0272" /inference="protein motif:PFAM:PF02406" /note="PFAM: Monooxygenase component MmoB/DmpM; KEGG: azo:azo2442 phenol hydrolase subunit P2" /codon_start=1 /transl_table=11 /product="monooxygenase component MmoB/DmpM" /protein_id="YP_004386216.1" /db_xref="GI:330822913" /db_xref="GO:0004497" /db_xref="InterPro:IPR003454" /db_xref="GeneID:10481288" /translation="MSNVFIAFQKNEETRAIVDAIVADNPQAIVNQQPAMVKIDAPGR LVIRKSSIEQEIGREFDLQEMHVHLITLSGNIDETDDELSLTWNQ" misc_feature 302454..302714 /locus_tag="Alide2_0272" /note="MmoB/DmpM family; Region: MmoB_DmpM; pfam02406" /db_xref="CDD:145512" gene 302749..304296 /locus_tag="Alide2_0273" /db_xref="GeneID:10481289" CDS 302749..304296 /locus_tag="Alide2_0273" /EC_number="1.14.13.7" /inference="protein motif:PRIAM:1.14.13.7" /note="KEGG: azo:azo2441 phenol hydroxylase subunit P3; PFAM: Methane/phenol/toluene hydroxylase; YHS" /codon_start=1 /transl_table=11 /product="Phenol 2-monooxygenase" /protein_id="YP_004386217.1" /db_xref="GI:330822914" /db_xref="InterPro:IPR003430" /db_xref="InterPro:IPR007029" /db_xref="GeneID:10481289" /translation="MDMKVSKKLGLKERYNLMTRDLAWTPTYQALKDVFPYMEYEGIK IHDWDKFEDPFRMTMDSYWKYQAEKERKLYAIIDAFTQNNGHLGVTDARYINALKLFL TGVSPLEYMAHRGFAHVGRQYPGAGPRVACLMQSLDEIRHSQTQIHSLSNYNKHYNGF ANWRHQHDRVWYLSVPKSFFDDAVSAGPFEFIVAIGFAFEYVLTNLLFVPFISGAAYN GDMGAMAFGFSAQSDESRHMTLGLEIIKFILEQDPDNLPIVQAWLDKWFWRGYRVLTL VAMMMDYMLPKRVMSWKEAWETYAEQNGGALFADLARYGIKVPAGWEQACKDKDHLSH QAWNVFYNYGAAAPFHTWAPSEADMKWLSEKYPDTFDKYYRPVWEHYAKEQAEGRRFY NKTLPMLCQTCQIPMFFTEPGDPTKIAYRESDWRGQKYHFCSDGCKHIFDNEPEKYVQ SWLPVHQIYQGNCFPEDADPSKPGFDPLMEVLRWYRMEFGRDNLDYADSQDKKNFEAW RAQSTSN" misc_feature 302803..304191 /locus_tag="Alide2_0273" /note="Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain; Region: AAMH_A; cd01057" /db_xref="CDD:153115" misc_feature order(302959..302964,302971..302976,302980..302985, 302995..302997,303013..303015,303409..303411, 303421..303423,303430..303432) /locus_tag="Alide2_0273" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153115" misc_feature order(303046..303048,303058..303063,303274..303276, 303367..303369,303577..303579,303586..303591, 303757..303759,303793..303795,303799..303801) /locus_tag="Alide2_0273" /note="putative path to active site cavity [active]" /db_xref="CDD:153115" misc_feature order(303073..303075,303163..303165,303172..303174, 303346..303348,303448..303450,303457..303459) /locus_tag="Alide2_0273" /note="diiron center [ion binding]; other site" /db_xref="CDD:153115" gene 304363..304719 /locus_tag="Alide2_0274" /db_xref="GeneID:10481290" CDS 304363..304719 /locus_tag="Alide2_0274" /inference="protein motif:PFAM:PF04663" /note="PFAM: Phenol hydroxylase,conserved region; KEGG: rpf:Rpic12D_3551 phenol hydroxylase conserved region" /codon_start=1 /transl_table=11 /product="Phenol hydroxylase conserved region" /protein_id="YP_004386218.1" /db_xref="GI:330822915" /db_xref="InterPro:IPR006756" /db_xref="GeneID:10481290" /translation="MAVTSAAPYDFPQQDTADKFPAPLLYIGWEDHKMFCAPFCVPMP PATRFGDMVQGALPGLYGAHPDFARIDWNRAEWFVSGKPFTPDMDKTVAENGLGHKSV IRFRTPGLTGLQGSCF" misc_feature 304402..304596 /locus_tag="Alide2_0274" /note="Phenol hydroxylase conserved region; Region: Phenol_monoox; pfam04663" /db_xref="CDD:147023" gene 304790..305860 /locus_tag="Alide2_0275" /db_xref="GeneID:10481291" CDS 304790..305860 /locus_tag="Alide2_0275" /EC_number="1.14.13.7" /inference="protein motif:PRIAM:1.14.13.7" /note="KEGG: azo:azo1850 phenol 2-monooxygenase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin" /codon_start=1 /transl_table=11 /product="Phenol 2-monooxygenase" /protein_id="YP_004386219.1" /db_xref="GI:330822916" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR001433" /db_xref="InterPro:IPR008333" /db_xref="GeneID:10481291" /translation="MSHQLTIEPLGQVIEVEEGQTILDAALRAGIYLPHACCHGLCGT CKVQVTDGEVEHGEASGFALMDYERDEGLCLACCATLESDSAVIEAEIDDEPDALNLP VQDFAGVVSRIEDLTPTIKGVWIELDAPMTFQAGQYINLQIPGESQPRAFSIASSPAQ ASEIELNIRLVPGGKGTGWVHQQLRPGERVRLSGPYGRFFVRASAHDKQGLGYLFLAG GSGLSSPRSMVLDLLAAGGDKPITLVNGARAQDELYHHAEFLQLAAEHPRFTYVAALS GEPEGSGWQGARGYVHEAAKAHFGNDFRGHKAYLCGPPLMIDACISTLMQGRLFERDI YTEKFISAADAQQVRSPLFKKI" misc_feature 304790..305821 /locus_tag="Alide2_0275" /note="CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated; Region: PRK07609" /db_xref="CDD:181058" misc_feature 304799..305050 /locus_tag="Alide2_0275" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(304886..304891,304898..304900,304907..304909, 304913..304924,305015..305020) /locus_tag="Alide2_0275" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(304898..304900,304913..304915,304922..304924, 305018..305020) /locus_tag="Alide2_0275" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature 305087..305806 /locus_tag="Alide2_0275" /note="Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P); Region: phenol_2-monooxygenase_like; cd06211" /db_xref="CDD:99807" misc_feature order(305201..305203,305237..305248,305288..305296, 305300..305302,305312..305320,305447..305449, 305456..305458,305798..305800,305804..305806) /locus_tag="Alide2_0275" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99807" misc_feature order(305237..305239,305243..305248) /locus_tag="Alide2_0275" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99807" misc_feature order(305309..305311,305318..305320,305327..305329, 305348..305350,305372..305374,305378..305380) /locus_tag="Alide2_0275" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99807" misc_feature order(305432..305434,305444..305455,305459..305461) /locus_tag="Alide2_0275" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99807" misc_feature order(305447..305452,305525..305533,305723..305728) /locus_tag="Alide2_0275" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99807" gene 305874..306215 /locus_tag="Alide2_0276" /db_xref="GeneID:10481292" CDS 305874..306215 /locus_tag="Alide2_0276" /inference="protein motif:PFAM:PF00111" /note="PFAM: Ferredoxin; KEGG: ajs:Ajs_0217 ferredoxin" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_004386220.1" /db_xref="GI:330822917" /db_xref="GO:0009055" /db_xref="GO:0051536" /db_xref="InterPro:IPR001041" /db_xref="GeneID:10481292" /translation="MASYTITIAETGESYRCLDERSVLEGMEALGRKGIPVGCRQGGC GVCKVQVLEGRYAKRVMSRAHVSAEEEASGCVLSCRIKPSSDLRVSVVGAMKKNVCRP QEQAAPTLSTP" misc_feature 305886..306140 /locus_tag="Alide2_0276" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(305976..305981,305988..305990,305997..305999, 306003..306014,306105..306110) /locus_tag="Alide2_0276" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(305988..305990,306003..306005,306012..306014, 306108..306110) /locus_tag="Alide2_0276" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" gene 306238..307164 /locus_tag="Alide2_0277" /db_xref="GeneID:10481293" CDS 306238..307164 /locus_tag="Alide2_0277" /EC_number="1.13.11.2" /inference="protein motif:TFAM:TIGR03211" /note="TIGRFAM: Catechol 2,3 dioxygenase; KEGG: ajs:Ajs_0218 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase" /codon_start=1 /transl_table=11 /product="catechol 2,3 dioxygenase" /protein_id="YP_004386221.1" /db_xref="GI:330822918" /db_xref="GO:0008198" /db_xref="GO:0018577" /db_xref="InterPro:IPR004360" /db_xref="InterPro:IPR017624" /db_xref="GeneID:10481293" /translation="MAMTGVLRPGHAQLRVLDLEESVQWYTDVMGLVPMGRDQQGRAY FKTRAERDHNSVVLRQADQAGIDFFAFKVLDKATLEDFDRKLQAYGVKTERIPAGELL ETGERVRFKIPTGHTIELYAEKTDVGNGIGYQDPDVDVLDGPGIRPIRMDHCLLYGGD IDGNVKLFTEVLGFTLVERVKLEDGKTDLAVWLTCSAKAHDIAMVRHGEDGKLHHVSF QMPSWESVLRAADIMSVNRVSIDIGPTRHGITQGTTIYFFDPSGNRLETFCGGYDHYP DMHPITWSWEHVGRGIFYHDRKLNDAFLSVVT" misc_feature 306250..307161 /locus_tag="Alide2_0277" /note="catechol 2,3 dioxygenase; Region: catechol_2_3; TIGR03211" /db_xref="CDD:163184" misc_feature 306250..306615 /locus_tag="Alide2_0277" /note="N-terminal domain of catechol 2,3-dioxygenase; Region: 2_3_CTD_N; cd07265" /db_xref="CDD:176686" misc_feature order(306256..306261,306382..306384,306391..306393, 306451..306453,306613..306615) /locus_tag="Alide2_0277" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176686" misc_feature 306670..307095 /locus_tag="Alide2_0277" /note="This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632" /db_xref="CDD:196803" misc_feature order(306694..306696,306706..306708,306805..306807, 306844..306846,306850..306852,306880..306882, 307003..307005,307027..307029,307033..307035) /locus_tag="Alide2_0277" /note="active site" /db_xref="CDD:176657" misc_feature order(306694..306696,306880..306882,307033..307035) /locus_tag="Alide2_0277" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176657" gene 307164..307595 /locus_tag="Alide2_0278" /db_xref="GeneID:10481294" CDS 307164..307595 /locus_tag="Alide2_0278" /inference="protein motif:PFAM:PF03928" /note="PFAM: Domain of unknown function DUF336; KEGG: ajs:Ajs_0219 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386222.1" /db_xref="GI:330822919" /db_xref="InterPro:IPR005624" /db_xref="GeneID:10481294" /translation="MQRSVEQRAITAEAAHAAVAAACAKAGELGIRVNAAVTDASGVL AAFLRMPGAFLHSVDIAIDKAYTAAGFGFATAQWVGILRGDEALRLGMPQRPRNVVFG GGLPMREGGVLIGGIGVSGGSAEQDEICARAALAALGLEET" misc_feature 307245..307553 /locus_tag="Alide2_0278" /note="Domain of unknown function (DUF336); Region: DUF336; cl01249" /db_xref="CDD:194079" gene 307608..308504 /locus_tag="Alide2_0279" /db_xref="GeneID:10481295" CDS 307608..308504 /locus_tag="Alide2_0279" /inference="similar to AA sequence:KEGG:CtCNB1_3154" /note="KEGG: ctt:CtCNB1_3154 ZorfX" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386223.1" /db_xref="GI:330822920" /db_xref="GeneID:10481295" /translation="MKTTSIAAAAAAAALALLAATGAHADGHYVPGVEGIQAASVPPP GMYYLGYLVNYNIDDFRAPGSSTNLPGHNSGTVTALANRFVWITGHKLLGADYGVEAI VPLVRTSLTINAAGISDSRSGVGDIYLGPLVLGWHGPQWDAVAAAGMWFDTASTSHPA SAGKGFKSTMLTGGLTYYFDGAKTLSGSALMRYEFNGRNSAGVRPGDQLTLEWGLGKS FGAVSAGLVGYSQWQTTNDDGAGASTNKAARHAVGAELVYPVPGAGVFLKGAVYKEFS ATAGTGPQPKGSLVRFTLVKAF" sig_peptide 307608..307685 /locus_tag="Alide2_0279" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.979 at residue 26" misc_feature 307686..308501 /locus_tag="Alide2_0279" /note="Protein involved in meta-pathway of phenol degradation [Energy production and conversion]; Region: COG4313" /db_xref="CDD:34035" gene 309275..310735 /locus_tag="Alide2_0280" /db_xref="GeneID:10481296" CDS 309275..310735 /locus_tag="Alide2_0280" /EC_number="1.2.1.8" /inference="protein motif:TFAM:TIGR03216" /note="TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; KEGG: ajs:Ajs_0220 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain" /codon_start=1 /transl_table=11 /product="2-hydroxymuconic semialdehyde dehydrogenase" /protein_id="YP_004386224.1" /db_xref="GI:330822921" /db_xref="GO:0008784" /db_xref="InterPro:IPR015590" /db_xref="InterPro:IPR017628" /db_xref="GeneID:10481296" /translation="MKEFLNFINGEYVRGTSGKTFDDINPVDGSLIGRIHEAGQGEVN AAVAAAQAALKGDWGRLAVVERCKLLDAVAGEINRRFDDFLQAEIADTGKPHHLASHV DIPRGAANFQIFIDTIKSTATESFNMRTPDGKTALSYGVRVPRGVIAVVCPWNLPLLL MTWKVGPALACGNTVVVKPSEETPATATLLGEVMNAVGMPKGVYNVVHGFGPGSAGEF LTRHPGVNGITFTGETRTGSAIMKAAADGVRPVSLEMGGKNAAVVFADCDFQVAVDTL TRSCFENAGQVCLGTERVYVERPIFAKLVAALKERAETMKPGLPFDKDTKIGPLISKK HQAKVLGLYQKARDEGATIVTGGGIPDMPEALRGGSWVQPTIWTGLPETATVVTEEIF GPCCHISPFDTEEEVLGKVNANRYGLATAVFTQDIARANRLAHQIEVGLCWINAWFLR DLRTPFGGSKQSGIGREGGVHSLEFYTELRNVMVKF" misc_feature 309314..310720 /locus_tag="Alide2_0280" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature 309341..310726 /locus_tag="Alide2_0280" /note="Human aldehyde dehydrogenase family 8 member A1-like; Region: ALDH_F8_HMSADH; cd07093" /db_xref="CDD:143412" misc_feature order(309728..309736,309752..309754,309806..309808, 309812..309817,309905..309907,309920..309925, 309965..309973,309980..309982,309989..309991, 310034..310039,310136..310138,310442..310444, 310448..310450,310640..310642) /locus_tag="Alide2_0280" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143412" misc_feature order(309737..309739,310034..310036,310127..310129, 310136..310138) /locus_tag="Alide2_0280" /note="catalytic residues [active]" /db_xref="CDD:143412" gene 310797..311660 /locus_tag="Alide2_0281" /db_xref="GeneID:10481297" CDS 310797..311660 /locus_tag="Alide2_0281" /EC_number="3.7.1.8" /inference="protein motif:PRIAM:3.7.1.8" /note="KEGG: ctt:CtCNB1_3150 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1" /codon_start=1 /transl_table=11 /product="2,6-dioxo-6-phenylhexa-3-enoate hydrolase" /protein_id="YP_004386225.1" /db_xref="GI:330822922" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10481297" /translation="MTDTARNPELAHTIAAAGLRTNYHDVGQGDPVLLIHGSGPGVSA WANWRLVMPALAERARVIAPDMAGFGYSERPAGFAYGLDAWVRQAVGLLDALGIARAD LVGNSFGGGLALALAIRHPERVRRLVLMGSVGVPFAITPGLDAVWGYEPSFEAMRALL DIFAFDRALVNDELARLRYEASIRPGFHESFAAMFPAPRQRWVDALASRESDIRRLPH ETLVIHGREDRVIPLANAYTLADWLPRAQLHVYGRCGHWTQIEHAARFARLVGGFLAE AAADEPLPLAA" misc_feature 310851..311615 /locus_tag="Alide2_0281" /note="2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; Region: biphenyl_bphD; TIGR03343" /db_xref="CDD:132386" misc_feature <311049..>311192 /locus_tag="Alide2_0281" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 311665..312447 /locus_tag="Alide2_0282" /db_xref="GeneID:10481298" CDS 311665..312447 /locus_tag="Alide2_0282" /EC_number="4.2.1.80" /inference="protein motif:TFAM:TIGR03220" /note="TIGRFAM: 2-oxopent-4-enoate hydratase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like" /codon_start=1 /transl_table=11 /product="2-oxopent-4-enoate hydratase" /protein_id="YP_004386226.1" /db_xref="GI:330822923" /db_xref="InterPro:IPR002529" /db_xref="InterPro:IPR017632" /db_xref="GeneID:10481298" /translation="MNTPLHEQLGEELYQALRQRQVLEPLSNRHPGLTIEDAYAIQQR MLARRLAAGEKVVGKKIGVTSKAVMDMLGVYQPDFGWLTDAMVYNEGEAIPADTLIQP KAEGEIAFVLKKTLQGPGVTAADVLAATEGVMACFEIVDSRIRDWKIKIQDTVADNAS CGVFVLGDRLVDPRDVDLGTCGMVLEKNGEIVATGAGAAALGHPANAVAWLANTLGRL GIALEAGEVVLSGSLGIMVPVQAGDNLRVTIGGIGGCSVRFV" misc_feature 311677..312441 /locus_tag="Alide2_0282" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 312466..313380 /locus_tag="Alide2_0283" /db_xref="GeneID:10481299" CDS 312466..313380 /locus_tag="Alide2_0283" /EC_number="1.2.1.10" /inference="protein motif:TFAM:TIGR03215" /note="SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Acetaldehyde dehydrogenase; KEGG: ajs:Ajs_0223 acetaldehyde dehydrogenase; PFAM: Acetaldehyde dehydrogenase, C-terminal; Semialdehyde dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="acetaldehyde dehydrogenase" /protein_id="YP_004386227.1" /db_xref="GI:330822924" /db_xref="GO:0008774" /db_xref="InterPro:IPR000534" /db_xref="InterPro:IPR003361" /db_xref="InterPro:IPR015426" /db_xref="GeneID:10481299" /translation="MNQKIKCALIGPGNIGTDLLAKLQRSPVLEPVWMVGIDPESDGL KRAREMGIKTTHEGVDGLVPHMKQDGVQIVFDATSAYVHAENSRKVNAQGALMIDLTP AAIGPYCVPPVNLKEHLGRGETNVNMVTCGGQATIPMVVAVSRVQPVAYGEIVATVSS RSAGPGTRKNIDEFTRTTAGAIEKVGGAKKGKAIIVINPADPPLIMRDTVHCLTEEEP DREAITQSIHAMLAEVQKYVPGYKLVNGPVFDGKRVSVFLEVEGLGDYLPKYAGNLDI MTAAAARTAEMFAEEMLAGRLAFQPVAA" misc_feature 312466..313293 /locus_tag="Alide2_0283" /note="acetaldehyde dehydrogenase; Validated; Region: PRK08300" /db_xref="CDD:181366" misc_feature 312481..312825 /locus_tag="Alide2_0283" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 312856..313269 /locus_tag="Alide2_0283" /note="Prokaryotic acetaldehyde dehydrogenase, dimerisation; Region: AcetDehyd-dimer; pfam09290" /db_xref="CDD:150078" gene 313395..314432 /locus_tag="Alide2_0284" /db_xref="GeneID:10481300" CDS 313395..314432 /locus_tag="Alide2_0284" /EC_number="4.1.3.39" /inference="protein motif:TFAM:TIGR03217" /note="TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; KEGG: ajs:Ajs_0224 4-hydroxy-2-ketovalerate aldolase; PFAM: Pyruvate carboxyltransferase; DmpG-like communication" /codon_start=1 /transl_table=11 /product="4-hydroxy-2-oxovalerate aldolase" /protein_id="YP_004386228.1" /db_xref="GI:330822925" /db_xref="GO:0008701" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR012425" /db_xref="InterPro:IPR017629" /db_xref="GeneID:10481300" /translation="MTFNGKKITLHDMTLRDGMHPKRHLMTLEQMKSVAQGLDAAGVP LIEVTHGDGLGGASVNYGFPAHSDEEYLGTVIPLMKQAKVSALLLPGIGTVDHLKMAH GLGVHTIRVATHCTEADVSEQHITAARKLDMDTVGFLMMAHMNSASGLVKQARLMEGY GANCIYVTDSAGYLLPEQVKERIAAVRAALKPETELGFHGHHNLAMGVANSIAAIEAG ANRIDAAAAGLGAGAGNTPMEVLVAVLDRMGLQTGVDVWKIQDVAEDLVVPLMDFPIR IDRDALTLGYAGVYGSFLLFAKRAEKKYGIPARDLLVELGRRGMVGGQEDMIEDTALT MARERGIKVAA" misc_feature 313407..314414 /locus_tag="Alide2_0284" /note="4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated; Region: PRK08195" /db_xref="CDD:181282" misc_feature 313416..314207 /locus_tag="Alide2_0284" /note="4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain; Region: DRE_TIM_HOA; cd07943" /db_xref="CDD:163681" misc_feature order(313440..313445,313452..313454,313533..313535, 313806..313808,313812..313814,313902..313904, 313989..313991,313995..313997) /locus_tag="Alide2_0284" /note="active site" /db_xref="CDD:163681" misc_feature order(313440..313445,313533..313535) /locus_tag="Alide2_0284" /note="catalytic residues [active]" /db_xref="CDD:163681" misc_feature order(313443..313445,313989..313991,313995..313997) /locus_tag="Alide2_0284" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163681" misc_feature 314211..314408 /locus_tag="Alide2_0284" /note="DmpG-like communication domain; Region: DmpG_comm; pfam07836" /db_xref="CDD:149094" gene 314466..315254 /locus_tag="Alide2_0285" /db_xref="GeneID:10481301" CDS 314466..315254 /locus_tag="Alide2_0285" /EC_number="4.1.1.77" /inference="protein motif:TFAM:TIGR03218" /note="TIGRFAM: 4-oxalocrotonate decarboxylase; KEGG: ajs:Ajs_0225 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like" /codon_start=1 /transl_table=11 /product="4-oxalocrotonate decarboxylase" /protein_id="YP_004386229.1" /db_xref="GI:330822926" /db_xref="InterPro:IPR002529" /db_xref="InterPro:IPR017630" /db_xref="GeneID:10481301" /translation="MALNQATIAQLAEHLENCQLQVRDTPKITDEHPGMDWDDAYAIQ DAILQRKLARGARVVGLKAGLTSHAKMKQMGVESPVFGFLVDDYCVPEGGTVQTRELI HPKVEPEIVFVLKHALKGPGCHIGAVLAATDFVLPGIEVIDSRYRDFKFDLKSVVADN TSAARFVVGGQAQRPERVDLRTCGIVLEKNGQPVALGAGAAVLGHPAAAIAMLANHLG RRGQELPAGSMILSGGVTEAVSVQAGDNVSLRVQGMGSVSLRFA" misc_feature 314466..315248 /locus_tag="Alide2_0285" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 315295..316263 /locus_tag="Alide2_0286" /db_xref="GeneID:10481302" CDS 315295..316263 /locus_tag="Alide2_0286" /inference="similar to AA sequence:KEGG:CtCNB1_3145" /note="KEGG: ctt:CtCNB1_3145 twin-arginine translocation pathway signal" /codon_start=1 /transl_table=11 /product="twin-arginine translocation pathway signal protein" /protein_id="YP_004386230.1" /db_xref="GI:330822927" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481302" /translation="MQRRDFMAAAALAGLAPAWAQAGYPAKPVRMIVPFPPGGPTDVM GRTAAKAMGDRLGQQFVVENKAGAGGNIGTDAVAKAAPDGYTIGLTAISSLAIAPHLY SSVPFNVEKDFVPISLVGTTPCALVIHPAAPFSDLKGMVAYAKANPGKLSYATSGIGT SNHLAAELLQSVAGIQLTGVPYKGSSQIVPDLLSGTVMMSMESSLATTLQHVRAGKLK AIAVTSPQRAKALPDVPTVAESGYPGFEVETWFGLVAPARTPQAVVDKLHDAWAAGSA APEARAAFDNISGNLRVTTPQQFAEFIRAENRRWGDLIRKLGIKAD" sig_peptide 315295..315357 /locus_tag="Alide2_0286" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.971 at residue 21" misc_feature 315364..316251 /locus_tag="Alide2_0286" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 315424..316251 /locus_tag="Alide2_0286" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 316290..316481 /locus_tag="Alide2_0287" /db_xref="GeneID:10481303" CDS 316290..316481 /locus_tag="Alide2_0287" /inference="protein motif:TFAM:TIGR00013" /note="KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase" /codon_start=1 /transl_table=11 /product="4-oxalocrotonate tautomerase family enzyme" /protein_id="YP_004386231.1" /db_xref="GI:330822928" /db_xref="GO:0016853" /db_xref="InterPro:IPR004370" /db_xref="InterPro:IPR018191" /db_xref="GeneID:10481303" /translation="MPFAQIYMIEGRTEEQKKAVIEKVTQALVDAVGAPPANVRVWIH DVPKENWGIAGVSAKELGR" misc_feature 316293..316466 /locus_tag="Alide2_0287" /note="4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cd00491" /db_xref="CDD:29603" misc_feature order(316293..316298,316401..316403) /locus_tag="Alide2_0287" /note="active site 1 [active]" /db_xref="CDD:29603" misc_feature order(316293..316313,316347..316349,316356..316361, 316368..316370,316380..316385) /locus_tag="Alide2_0287" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29603" misc_feature order(316302..316304,316308..316310,316338..316343, 316350..316355,316362..316364,316395..316400, 316404..316418,316422..316427,316434..316460) /locus_tag="Alide2_0287" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:29603" misc_feature order(316308..316310,316440..316442) /locus_tag="Alide2_0287" /note="active site 2 [active]" /db_xref="CDD:29603" gene complement(316546..317184) /locus_tag="Alide2_0288" /db_xref="GeneID:10481304" CDS complement(316546..317184) /locus_tag="Alide2_0288" /inference="protein motif:PFAM:PF00753" /note="KEGG: ajs:Ajs_0228 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like" /codon_start=1 /transl_table=11 /product="beta-lactamase domain-containing protein" /protein_id="YP_004386232.1" /db_xref="GI:330822929" /db_xref="GO:0016787" /db_xref="InterPro:IPR001279" /db_xref="GeneID:10481304" /translation="MLHYHTIPVTAFQQNCSLVWCDQTMDAAVIDPGGDLDVLLAEAK RRGLHLKAIWLTHAHIDHAGGTGELAQRLALPIIGPHEGDQYWIDGLPQQGQMFGFPP ALHFTPTRWLHDGDTVTIGRETLHVRHCPGHTPGHVVFHAPQVDRCFVGDVLFAGSIG RTDFPGGNHQQLIDSITQRLWPMGDQTVFIPGHGPESTFGRERRSNPYVGNT" misc_feature complement(316564..317184) /locus_tag="Alide2_0288" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(317250..318002) /locus_tag="Alide2_0289" /db_xref="GeneID:10481305" CDS complement(317250..318002) /locus_tag="Alide2_0289" /inference="protein motif:PFAM:PF09339" /note="KEGG: dac:Daci_4281 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004386233.1" /db_xref="GI:330822930" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10481305" /translation="MSNPPAPSKPADGGVIAVTRALQLLEAFAVGESHLSLAELSRRA GLHKTTVLRLARTLAQSGYMVQREDGDWRLGPAAGWLGARYQAGFDVQNVLEPALREL TQTSGESAAFYVREGNVRTCLVRVEGPQALRHHARMGEGLPLDKGSPGRVILAFSGEP GEVYEEIRRRGYHWSIGEREQGVATVSAPVFGRNWRLLGCVCISGPQSRLPQEKLEAL AQTIIKTANQLSYALAGKAASTAAQVPGVWHP" misc_feature complement(317304..317954) /locus_tag="Alide2_0289" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(317697..317954) /locus_tag="Alide2_0289" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(317307..317615) /locus_tag="Alide2_0289" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 318127..319107 /locus_tag="Alide2_0290" /db_xref="GeneID:10481306" CDS 318127..319107 /locus_tag="Alide2_0290" /inference="similar to AA sequence:KEGG:Daci_4280" /note="KEGG: dac:Daci_4280 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386234.1" /db_xref="GI:330822931" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481306" /translation="MLARTLSRSLCAAALGLAAATGALAQAAYPAKPIRLIVPFPPGG GTDMIARTVAQKVADQNKWSVIVDNRPGAGGNLGVDAAAKAAPDGYTLVMGQTSNLAI NPTLYPRLPYDPLKDLVPVALVSSSPIVMAAPANTPFKTFADVVAAAKKQPDGITLGY SGNGTVAHLAGELAENAAGIKLRHIPYKGAAQAMTDLVSGQIDLYMSSVPTLLGQVRN GKLRPIVVTSLKRSAQLPDTPSLAESGYRGFDAVTWFGVLAPAGTPASIVQQLNKAIN EALKQPEVAEKLRSEGGDVLGGTPEQFDQLLRAEVPRWGKIVKDSGASLD" sig_peptide 318127..318204 /locus_tag="Alide2_0290" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.690 at residue 26" misc_feature 318211..319092 /locus_tag="Alide2_0290" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 318271..319095 /locus_tag="Alide2_0290" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 319115..319987 /locus_tag="Alide2_0291" /db_xref="GeneID:10481307" CDS 319115..319987 /locus_tag="Alide2_0291" /inference="protein motif:PFAM:PF04909" /note="PFAM: Amidohydrolase 2; KEGG: dac:Daci_4279 amidohydrolase 2" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004386235.1" /db_xref="GI:330822932" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10481307" /translation="MREPVAFSAGTGTPGVALPAGACDCHVHVYDRRYPAAPGAKLLP PDASAHDYRALQRRLGTTRAVLVTPSTYGTDNRCMLDGLAALGPQARGVAVIGGGEID AELQRLHDAGVRGVRLNLSLGVSGTADMLEPLARRIAPLGWHLQLLMAPELLAAQAGV LRRLPVPLVFDHFGRIAPGAQGQAAHALLLELLQAGRAWIKLSGGYIVSALHTVEDPA LDPLAASYLRCAPERVLWGSDWPHATASAGLQPMPDDARQIDRLHDWTRLAFVPLRRV LVDNPQALYGFPPL" misc_feature 319154..319975 /locus_tag="Alide2_0291" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature 319175..319966 /locus_tag="Alide2_0291" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature order(319190..319192,319196..319198,319544..319546, 319628..319630,319829..319831) /locus_tag="Alide2_0291" /note="active site" /db_xref="CDD:30035" gene 320010..320999 /locus_tag="Alide2_0292" /db_xref="GeneID:10481308" CDS 320010..320999 /locus_tag="Alide2_0292" /inference="similar to AA sequence:KEGG:Daci_4278" /note="KEGG: dac:Daci_4278 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386236.1" /db_xref="GI:330822933" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481308" /translation="MSAHDFSATRRRLLAALGVALAAGPALAQEWPGGKTITYVVPYP PGGSTDVLGRSIAQRLGPALGTTVIVDNKPGATGTIGAAFVARAQPDGYTLLGTTIGP QAIAPHLMGKLPYDPIAGFEPVITLGTIPHILVVGAGQPFQGVADLVAAGKAQPGKLA YASGGNGTILQMQAELLQQQTGARFIHVPYKGDTPALQDTLGGQVQFMFAPAAAALPH VQAGKLRALAVTSAQRLPALPQVPTMGEAGLKDFVVEQWHAVFVPARTPAAIVQRLNA EIAKALKDPAVTALADKLGITLVGGTPGQLAALQKADSTKWAKVIRDGNIKAD" sig_peptide 320010..320096 /locus_tag="Alide2_0292" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 29" misc_feature 320094..320987 /locus_tag="Alide2_0292" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 320166..320987 /locus_tag="Alide2_0292" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 321032..321718 /locus_tag="Alide2_0293" /db_xref="GeneID:10481309" CDS 321032..321718 /locus_tag="Alide2_0293" /inference="protein motif:PFAM:PF03737" /note="PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase" /codon_start=1 /transl_table=11 /product="Dimethylmenaquinone methyltransferase" /protein_id="YP_004386237.1" /db_xref="GI:330822934" /db_xref="InterPro:IPR005493" /db_xref="GeneID:10481309" /translation="MSQLPEVIRSFERVSAEVVQQAGTFQAAILADVAGRRGTLHARV APVHERMKLAGPAFTVEVRPGDNLMIHAAIALAQPGDILVIDGKGDQTAALMGTLMLS ACKKRGLGGVIVDGAIRDKLELLELGFPVFSAGFNPAGPTKFVPGRINHPISCAGASV FPGDLVVGDADGVVVIERAKAPAMMALAVKKVADEAARIEAIARGDTASKWLPAALRA AGVLKEGEEL" misc_feature 321050..321691 /locus_tag="Alide2_0293" /note="hypothetical protein; Validated; Region: PRK06201" /db_xref="CDD:180465" misc_feature 321050..321604 /locus_tag="Alide2_0293" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene 321715..322632 /locus_tag="Alide2_0294" /db_xref="GeneID:10481310" CDS 321715..322632 /locus_tag="Alide2_0294" /EC_number="1.1.1.95" /inference="protein motif:PRIAM:1.1.1.95" /note="KEGG: vap:Vapar_5586 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain" /codon_start=1 /transl_table=11 /product="phosphoglycerate dehydrogenase" /protein_id="YP_004386238.1" /db_xref="GI:330822935" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:10481310" /translation="MSRPAILITAADLAPQALALLADYEIVYAGRSPTEDDIVALCRR HDPVAIIVRYSKVGAAAMDAAPSLKVISKHGSGTDTIDKAAAKVRGIEVVAAVGANAA AVAEQALALLLACAKSVPQLNERMHAGHWDKATHKSLELSGRTIGLIGLGAIGLRFAK MVDALGMHVLGFDPFAKNLPDYVQPADLETIWRESDAISLHCPLTDDNRHLLGAGTLA RCKQGVIVVNTARGGLIDEAALLAAVQSGQVRMAGLDSFAVEPMTAGHPFQHQPGFIL SPHIGGVTSDAYVNMGLGAARNALAVLAR" misc_feature 321721..322626 /locus_tag="Alide2_0294" /note="Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052" /db_xref="CDD:31252" misc_feature 322069..322557 /locus_tag="Alide2_0294" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 322657..323646 /locus_tag="Alide2_0295" /db_xref="GeneID:10481311" CDS 322657..323646 /locus_tag="Alide2_0295" /inference="similar to AA sequence:KEGG:Vapar_3894" /note="KEGG: vap:Vapar_3894 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386239.1" /db_xref="GI:330822936" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481311" /translation="MQFNKNRRLALIHQALAAIALVATGLPVQAQNWPERPIKLVVPY PAGGNADNTARLLATQLSARLGQQVVVDNRPGGSGTIGAAAVAKAAPDGYTLLLDATA FTVNPSLFAKLPFDAAKDFAPISLVMQAPLLLVVPAVSPLKTVADLVQAAKARPGQLT YASAGNGGAQHLAGELFKQGAKVSMTHIPYRGGAPALTDLIGGQVDLMFSATTASGPF VKSGKLRALAISSVQRTPGWEQVPTVAEAGLPGFQVNEWNGLFAPAGTPQPVLQRLEA ETRAIVASPEMKKRFAELGVQGVGSSAQEFKSFVQTETAKWAGVIRTSGIRMD" sig_peptide 322657..322749 /locus_tag="Alide2_0295" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 31" misc_feature 322729..323640 /locus_tag="Alide2_0295" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 322816..323634 /locus_tag="Alide2_0295" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 323993..324949 /locus_tag="Alide2_0296" /db_xref="GeneID:10481312" CDS 323993..324949 /locus_tag="Alide2_0296" /inference="similar to AA sequence:KEGG:Daci_4274" /note="KEGG: dac:Daci_4274 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386240.1" /db_xref="GI:330822937" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481312" /translation="MKSLKKYLLAACACIALAAHAAFPERPITIVVPYAPGGAADAVA RVIASRLGTRLGGSVIVDNKAGASGTIGAGYVAKAQADGYTMLYDATPYSINPHLFPK MPYAANALQPLSLVLLAPNVLIVPASAPFKSVGDLIAKAKAEPGKLNFASGGSGTVQR LAAELFRQKLGLDMVHVPYKSGGPAITDVMAGQVDFMFGTVAATAPHIAAGKLRALAV SSPERSRRLPDVPTVAEAAIPGYEAYEWNGMFLPAGTPAPIAAQLHKALAEVLQEDEV RQRLADMGAQPIGSTPAEFAAFLKKEDAKWGEVVRKGHIKLD" sig_peptide 323993..324058 /locus_tag="Alide2_0296" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 22" misc_feature 324059..324925 /locus_tag="Alide2_0296" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 324119..324928 /locus_tag="Alide2_0296" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 324955..325830 /locus_tag="Alide2_0297" /db_xref="GeneID:10481313" CDS 324955..325830 /locus_tag="Alide2_0297" /inference="protein motif:PFAM:PF04909" /note="PFAM: Amidohydrolase 2; KEGG: dac:Daci_4273 amidohydrolase 2" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004386241.1" /db_xref="GI:330822938" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10481313" /translation="MAQPLLSAPVPHSVGLNRPARTLPPLACDSHMHIFDPRFAPSPH WRRQPPDAPVAAYRQLQQRLGTRRAVVVTPSTYGTGNACTLDALDQLGDDARGVAVVA QDVQDAELDRLHARRVRGLRVNFVSPQSWGETTPQMLATLARKAARLPGWHIQVFMHP EQIVALESVLAALPVPLVVDHLGRIDPAQGQRAEAHGALRRLLDGGNAWVKLSGAYMR STAPAYADTLPLAQALVRAAPERLVWGSDWPHTTEAPGTVNDAGLVDLLRAWAGSDAA MDRILVDNPARLYGF" misc_feature 325009..325827 /locus_tag="Alide2_0297" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature 325030..325818 /locus_tag="Alide2_0297" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature order(325045..325047,325051..325053,325411..325413, 325495..325497,325693..325695) /locus_tag="Alide2_0297" /note="active site" /db_xref="CDD:30035" gene 325843..326760 /locus_tag="Alide2_0298" /db_xref="GeneID:10481314" CDS 325843..326760 /locus_tag="Alide2_0298" /inference="protein motif:PFAM:PF08450" /note="PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain-containing protein" /codon_start=1 /transl_table=11 /product="SMP-30/gluconolaconase/LRE-like region-containing protein" /protein_id="YP_004386242.1" /db_xref="GI:330822939" /db_xref="InterPro:IPR013658" /db_xref="GeneID:10481314" /translation="MFLLQAPEVRELELFTSMPEPLRRRQRSAWADANRGGAVTDSFL EGPVFDDAGNLYVTDIPWGRILRIDAQGAWTLVAEYDGEPNGMKFLDAGTLLITDYKN GLMRLDVASGKVTPYLERRNSERFKGVNDLIFDSAGNLYFTDQGQSGLHDPSGRLYRL RPSGQLDLLLANVPSPNGVALSPDERVLYLAVTRGNCVWRVPLLPDGSVAKVGQFFTS HGPSGPDGLAVDAEGRVLVANPGLGYVWVLNGRAEPVLVLRGAPGSSTTNLAFGGEGR RQLYVTDSTHGRILRAALDAPGLALHRPR" misc_feature 325975..326688 /locus_tag="Alide2_0298" /note="SMP-30/Gluconolaconase/LRE-like region; Region: SGL; pfam08450" /db_xref="CDD:192042" misc_feature 326239..>326394 /locus_tag="Alide2_0298" /note="Strictosidine synthase; Region: Str_synth; pfam03088" /db_xref="CDD:111929" gene complement(326772..327755) /locus_tag="Alide2_0299" /db_xref="GeneID:10481315" CDS complement(326772..327755) /locus_tag="Alide2_0299" /inference="similar to AA sequence:KEGG:Rmet_4433" /note="KEGG: rme:Rmet_4433 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004386243.1" /db_xref="GI:330822940" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481315" /translation="MHPIITRRGALRYALAAACAPGLAFAQEAPFPSTNVHLVVPYAA GGATDIVARAVADKLGPRWGKPVVIDNKPGAGTTLAAAQVARAPGDGHLLYMTTSAHT ISAALYKKLDYDPLASFAALTLVAKVPLVLVVRPSLDVSTLDEFTRYVRANPDKAAYA SPGNGTAQHLTGEMFNAAMKTRMVHVPYKGDAPAITDLLGGSVDAMFATLTVVLPHIA SGKLKAIALANGSRIEKVPAIPTFAEAGLPNFEAATWFGVLAPASLPKGLRERISRDI RAVVDQPDLRARLIDLGSEVVSNTPAAFEAFMQAESAKWQGIARQSGAVIN" sig_peptide complement(327675..327755) /locus_tag="Alide2_0299" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.999 at residue 27" misc_feature complement(326787..327665) /locus_tag="Alide2_0299" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(326784..327605) /locus_tag="Alide2_0299" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(327774..328667) /locus_tag="Alide2_0300" /db_xref="GeneID:10481316" CDS complement(327774..328667) /locus_tag="Alide2_0300" /EC_number="1.1.1.31" /inference="protein motif:PRIAM:1.1.1.31" /note="KEGG: vei:Veis_2089 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="YP_004386244.1" /db_xref="GI:330822941" /db_xref="InterPro:IPR006115" /db_xref="GeneID:10481316" /translation="MSNTTSQVIGFIGLGVMGEPICRNLAVKTGARVIAHDLDAAPLQ RLAAHGVQAAPSAAAVMQAADVVFLSLPSGEVVAQLCRQDGGLLASARAGQTIVDLST SPVDTTRALAGEFAALGARFVDAPVARTRAAAEAGTLAVMVGAAPEVFEAVKPLIATF ASDIALCGPVGCGQVLKILNNMVLFETVVAVSEAKAIGEKAGVDPNVLFDTLSKGSAD SFALRNHGMKAVLPGEFPERAFSVLYARKDLKYALQLARDAGVDARGAAVVDAWFQQA IDSGLGEKYHPVISRLIAGQR" misc_feature complement(327786..328643) /locus_tag="Alide2_0300" /note="3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084" /db_xref="CDD:32267" misc_feature complement(<328119..328643) /locus_tag="Alide2_0300" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(328690..330141) /locus_tag="Alide2_0301" /db_xref="GeneID:10481317" CDS complement(328690..330141) /locus_tag="Alide2_0301" /EC_number="1.2.1.8" /inference="protein motif:PRIAM:1.2.1.8" /note="KEGG: vei:Veis_2088 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain" /codon_start=1 /transl_table=11 /product="betaine-aldehyde dehydrogenase" /protein_id="YP_004386245.1" /db_xref="GI:330822942" /db_xref="InterPro:IPR015590" /db_xref="GeneID:10481317" /translation="MLEHKPMLIAGKDAPGEDGIAPLVSVNPATGATNHEVAAAGPRA VDEAVRSAAQACKAGAWTQMLPMQRARILFGIADRMERDGDHLARLQMLENGKVWSEC VKQVKSAAATFRYYGAVCETTGSEVTPARGNYLSMTAYEPYGVVAAITPWNSPLTMEA QKIAPALAAGNAVVLKPSEVTPSTGLAVGRIALEAGLPPGLLNVLPGTGHDVGAALVA HPLVRMVSFTGGTESGRRIAEVAARKLMPVALELGGKSPHIVFADADIDAAVAAVADG IFEGSGQSCVAGSRLFVQRSVHDAVVRKLVERARSLRVDLPDAAGAEMGPLATFAHRD KVERMVADARTAGAQILAGGARPGAAALARGAYYLPTVIGGIDNRAAIAQQEIFGPVL CVLPFDDEEDLIAQANDSAFGLASGVWTADYQRAWRVARALEAGTVWINTYKQLSIST PFGGFKESGIGREKGASGMRLYQQPKGIYFGMA" misc_feature complement(328702..330069) /locus_tag="Alide2_0301" /note="Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like; Region: ALDH_DhaS; cd07114" /db_xref="CDD:143432" misc_feature complement(328714..330069) /locus_tag="Alide2_0301" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(order(328786..328788,328900..328902, 328978..328980,328984..328986,329287..329289, 329383..329391,329431..329436,329443..329445, 329452..329463,329605..329610,329614..329616, 329659..329661,329683..329697)) /locus_tag="Alide2_0301" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143432" misc_feature complement(order(329287..329289,329296..329298, 329389..329391,329683..329685)) /locus_tag="Alide2_0301" /note="catalytic residues [active]" /db_xref="CDD:143432" gene complement(330336..331064) /locus_tag="Alide2_0302" /db_xref="GeneID:10481318" CDS complement(330336..331064) /locus_tag="Alide2_0302" /inference="protein motif:PFAM:PF09339" /note="KEGG: rme:Rmet_4432 IclR family transcriptional regulator family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004386246.1" /db_xref="GI:330822943" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10481318" /translation="MPAPTSTEPSDKSDGVAAVDRALHIATALANSPQALTLTELSNV TGMYKSTLLRLLASLERAGLVTHRADKRYALGPLAFVFGRSFEQVHGLQGAIQPILQW LVEQGTESPSFHVRHDQSHRLCLMRIDSNHSTLDRVRTGDLLPLHKGAAGKVITTLEQ GSQAQTAAAGDLVFTSFGERDPLCGAIAAPVFGPSASLLGAISVSGPLERFSELAVQR MKTLVLAAAQRATHSLGGKWPSAS" misc_feature complement(330756..331019) /locus_tag="Alide2_0302" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(330357..331013) /locus_tag="Alide2_0302" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(330381..>330509) /locus_tag="Alide2_0302" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 331337..331741 /locus_tag="Alide2_0303" /db_xref="GeneID:10481319" CDS 331337..331741 /locus_tag="Alide2_0303" /inference="similar to AA sequence:KEGG:AXYL_03188" /note="KEGG: axy:AXYL_03188 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386247.1" /db_xref="GI:330822944" /db_xref="GeneID:10481319" /translation="MSSHTTHTSLAERFASLAPHVNANACLVHRGRALTADLVIVVGT ARFLLRIHQGEVVEVTQRFALFHPCALFVQGTAKAWERLWEKVPPPGWHDLFALHKRG EMVIEGDTRLLFSHLQYLKDVLEMPRHVPADA" gene 331762..332610 /locus_tag="Alide2_0304" /db_xref="GeneID:10481320" CDS 331762..332610 /locus_tag="Alide2_0304" /inference="protein motif:PFAM:PF00561" /note="PFAM: Alpha/beta hydrolase fold-1; KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004386248.1" /db_xref="GI:330822945" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10481320" /translation="MKDRIEPIVGRYIHVDVLGETCRIYFEECGQGIPLLCLHTAGSD GRQFRHLLNDAGVTDRFRVIAFDMPWHGKSYPPVGFHERDYELTTERYVATIRAFSAA LGLDRPVVMGCSIGGRIVLQLAHAHGAEFRALIGLESADHQQPWYDTSWLNRPDVHGG EVCAALVSGLIAPQSPSEYRHETLWQYKQSGPGIFKGDLYFYRVDSDLRGKLGGIDTA TTPLYLLTGEYDFSCSPEDSIRTAETIPGAKVTVMKELGHFPMSENPAQFRKYILPVL DEIAAR" misc_feature 331864..332565 /locus_tag="Alide2_0304" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 332665..333819 /locus_tag="Alide2_0305" /db_xref="GeneID:10481321" CDS 332665..333819 /locus_tag="Alide2_0305" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: bav:BAV0983 ABC transporter, substrate-binding protein" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004386249.1" /db_xref="GI:330822946" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10481321" /translation="MKKILAASLLCVGCGAFAQEELKIGAIVTLSGAGAAWGQAMLYA AELAADDVNAKGGLDVGGRKYKVKVVAYDDKYQAGEAVTAANRLVFEDKVKYVIGPVG SAAALAVGPIMEKNKVVMLTLGFTDKALAADKPFSFRPNLTTMETSQPQIDWIVKAKN IKKVGALFPNDETGQQIAQDLEKAYAKAGAQMNAKEFFERERVDMMPLLTRIMAKGVD AIELDGNAPGTAGLIVKQARELGFKGHIIRSGGPATAEIVNVAGTGATNGMLVNTPIN PANAEVKAYAERYFGKYKKRMNGFSPAFYDGTRMLFQAMGQAGTATDTDKVRVALEGI KDFKGILGTLNWTGKEVYGSNHQISAPFYVARVQDGQEVVESTCSLSACK" sig_peptide 332665..332721 /locus_tag="Alide2_0305" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 at residue 19" misc_feature 332707..333774 /locus_tag="Alide2_0305" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 332731..333756 /locus_tag="Alide2_0305" /note="Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011" /db_xref="CDD:195943" gene 333841..334710 /locus_tag="Alide2_0306" /db_xref="GeneID:10481322" CDS 333841..334710 /locus_tag="Alide2_0306" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: bav:BAV0982 ABC transporter, permease protein" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386250.1" /db_xref="GI:330822947" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10481322" /translation="MDFTFLIGQALTNGLIIGLLYLLMAIGFTLVFGVMRVVNFAHGE FYMLGAFLAYVCVTRLQLPFLAAVLATFAVTLVAGWIIEVLVLKGFRGNELNGMISTI GLAMVLQNGALLVFGPDPQSMPPVAQGVVSLGPIVLPMSRLYVVAFSIAVLVLLYLFL MRSKGGRALRAVVQDTEIASAQGIRSHLMYPLGFGIGVALAAVAGALMAPVFSVSPSI GSTPLLKAFIVVILGGLGSIPGAALASLLLGVVESAANTFMSSSMSDMLLFGFVILML IFRPSGLLGKSGR" misc_feature 333880..334692 /locus_tag="Alide2_0306" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 334369..334425 /locus_tag="Alide2_0306" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 334715..335713 /locus_tag="Alide2_0307" /db_xref="GeneID:10481323" CDS 334715..335713 /locus_tag="Alide2_0307" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: dma:DMR_11370 ABC transporter permease protein" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386251.1" /db_xref="GI:330822948" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10481323" /translation="MHASSSISTMKPRAPDSGAGAPQARWRLWLPGLLVLFALPLFTS SPFHMHLAVLICLNIIFVNGLSLLSRTGQLSFCHAAFMGMGAYASVIATTQWHAPFLL SVALGVAVAAAVAFLLGAVILRLQGVYFVLVTFCFGELFRLFLLEGGSYTGGANGIAN IPPASILGLAFDTKTSFYVLAAACAFASIALLIALFRTPQGTALDAVGDNQELAEASG IGIQRTQMFAFVLGSAMAGFAGALLAHYLGFVSPESFNQHISVAAIVMLVIGGRASVL GPILGALIMTPLPELFRSAIETQNILYGITLILVLKFLPGGLVGIAAKLRGKGGKA" misc_feature 334877..335674 /locus_tag="Alide2_0307" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 335348..335404 /locus_tag="Alide2_0307" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 335710..336489 /locus_tag="Alide2_0308" /db_xref="GeneID:10481324" CDS 335710..336489 /locus_tag="Alide2_0308" /EC_number="3.6.3.25" /inference="protein motif:PRIAM:3.6.3.25" /note="PFAM: ABC transporter-like; KEGG: pth:PTH_2348 ABC-type branched-chain amino acid transport systems, ATPase component; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="sulfate-transporting ATPase" /protein_id="YP_004386252.1" /db_xref="GI:330822949" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481324" /translation="MTALLKVDGLSRYFGGLAAVKDLSFELNAGEIVGLIGPNGAGKS TAFNVISGSLAPSAGRIQFAGQSIEGMRPSQVVRHGLARTFQSATVYPAATVQENLYR GALARFDVPIWAQIAQTASYRSALRKVREEVDEVLEITGLAPYRDDVAGALAYGHQKR IGVAIGLATRPRLLLLDEPAAGLNPEECAEFGCLLKTLRDRHEISLLFVEHHMALVMN TCEKIIVLVQGQKIAQGTPDEVRNNPAVIEAYLGVDEDAHG" misc_feature 335710..336468 /locus_tag="Alide2_0308" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 335722..336447 /locus_tag="Alide2_0308" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 335818..335841 /locus_tag="Alide2_0308" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(335827..335832,335836..335844,335965..335967, 336238..336243,336340..336342) /locus_tag="Alide2_0308" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 335956..335967 /locus_tag="Alide2_0308" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 336166..336195 /locus_tag="Alide2_0308" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 336226..336243 /locus_tag="Alide2_0308" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 336250..336261 /locus_tag="Alide2_0308" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 336328..336348 /locus_tag="Alide2_0308" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 336476..337189 /locus_tag="Alide2_0309" /db_xref="GeneID:10481325" CDS 336476..337189 /locus_tag="Alide2_0309" /EC_number="3.6.3.30" /inference="protein motif:PRIAM:3.6.3.30" /note="PFAM: ABC transporter-like; KEGG: oan:Oant_4420 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Fe(3+)-transporting ATPase" /protein_id="YP_004386253.1" /db_xref="GI:330822950" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481325" /translation="MPTVEVKDVVVHYGLVEALHGVSFTVPAGQIVALVGSNGAGKST TLKALMGLKKVSAGSIHMDGRRIDATGPAQRVSMGLALSPEGRRLFPRMTVWENLMVG AHTVGSAAARNRSLEQVCALFPRVQERRSQLAGSLSGGEQQMVAIGRALMSHPQILML DEPSLGIAPKIVSEIAQAIVRLNRETGISVILVEQNARLALKMAHHAYVFEQGTVIRS GSGQELLRDAFVQKAFLGV" misc_feature 336476..337186 /locus_tag="Alide2_0309" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 336488..337156 /locus_tag="Alide2_0309" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 336581..336604 /locus_tag="Alide2_0309" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(336590..336595,336599..336607,336728..336730, 336956..336961,337058..337060) /locus_tag="Alide2_0309" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 336719..336730 /locus_tag="Alide2_0309" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 336884..336913 /locus_tag="Alide2_0309" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 336944..336961 /locus_tag="Alide2_0309" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 336968..336979 /locus_tag="Alide2_0309" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 337046..337066 /locus_tag="Alide2_0309" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 337192..338214 /locus_tag="Alide2_0310" /db_xref="GeneID:10481326" CDS 337192..338214 /locus_tag="Alide2_0310" /inference="protein motif:PFAM:PF04909" /note="PFAM: Amidohydrolase 2; KEGG: bbr:BB2353 hypothetical protein" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004386254.1" /db_xref="GI:330822951" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10481326" /translation="MENLPIVPRAEVRPQWLARHHEAPLEPELPIIDPHHHLSDSLWG GYLQDDLLADLGAGHNIQSTVFIQVGFGYREDGPGHLRPVGETERVAAIAGRIPAEAG TRVCEGIVGFADLALGARVEETLAAHLQAAAGRFRGIRCHAAAHAQFQYGVMHAPPLH LYMDPKFREGYATLARFGLTFDSWAYHTQLDELCDLARAFPDIPVVIDHIGVPLGVGP YVGQRDAVFAEWKRLLQKIAALPNVCIKLGGLGMSVFGFGFHLAGRPPTSEELAQAWS PYILTCIEIFGPSRCMFESNFPVDKGTCSYPVLWNTFKRITAGMSEDEKRQLYRDTAA RFYRLA" misc_feature 337264..338211 /locus_tag="Alide2_0310" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature 337285..338208 /locus_tag="Alide2_0310" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" gene complement(338199..338930) /locus_tag="Alide2_0311" /db_xref="GeneID:10481327" CDS complement(338199..338930) /locus_tag="Alide2_0311" /inference="protein motif:PFAM:PF00392" /note="KEGG: ajs:Ajs_0229 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004386255.1" /db_xref="GI:330822952" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10481327" /translation="MRCANVGTFFLACPMPSNTLPEPAADVPESAADTVFHGIVQGLA QQRFVPGQRLVEVDLAAQFGVSRASVREALQRLAAEGLVDLFRNKGAAIRTLSARETL EVLDVAERMTGLLARSAARAVAAGAPRAPIEDALARLHEADRGQGQDAFASARRALYR ALLSTSGSRELRRLLPTIHMPIVYAQHRPAALQRIRMRDYRAMCEAVLQGDEDAADAA GMQHVRNVREAIEAAIASDLGQARR" misc_feature complement(338220..338888) /locus_tag="Alide2_0311" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature complement(338658..338816) /locus_tag="Alide2_0311" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(338658..338669,338673..338678, 338706..338708,338715..338720,338724..338738, 338760..338765,338766..338768)) /locus_tag="Alide2_0311" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" gene 339014..340216 /locus_tag="Alide2_0312" /db_xref="GeneID:10481328" CDS 339014..340216 /locus_tag="Alide2_0312" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004386256.1" /db_xref="GI:330822953" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481328" /translation="MDFSLSPELRALRDKTRRFIAEQVIPLESDPRQSHHGPDESLRR ELVARARAAGLLTPHASREMGGLGLSHVEKAVVFEEAGYSRLGPTALNIHAPDEGNIH LMEEVATPAQKERWLRPQVAGELRSCFAMTEPSPGAGADPSMLQATAVRDGGDYVING RKWFITGADGADYAIVMARMEDGSATMFLTDMDRPGIVLERNMDAMDACFTGGHGVLR FENLRVPAADVLGEIGKGFRYAQVRLAPARLTHCMRWLGQARRAHDTALDYVRKRHAF GKPLVEHEGVGFMVADNDMDLHTARLHIWHTAWLLDQGEKCNFESSRAKVVCSEAEWR VVDRSVQMLGGQGVTGETPVMRIFTDMRAFRIYDGPSEVHRWSMARKLAHLSEKAEAE LLREGGAA" misc_feature 339014..340168 /locus_tag="Alide2_0312" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 339032..340153 /locus_tag="Alide2_0312" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(339308..339310,339398..339400,339404..339406, 339503..339505,339509..339511,340109..340117, 340121..340123,340127..340129) /locus_tag="Alide2_0312" /note="active site" /db_xref="CDD:173838" gene 340213..340986 /locus_tag="Alide2_0313" /db_xref="GeneID:10481329" CDS 340213..340986 /locus_tag="Alide2_0313" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="KEGG: dia:Dtpsy_0225 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004386257.1" /db_xref="GI:330822954" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481329" /translation="MTAAMDRFSLRGRLALVTGASSGLGTHFAQVLAAAGARVAVAAR RVDKLQCVVDAIAAEGGEARAFALDVADSASVRACFDALCAWGVPDVVVNNAGVTVTR PALEQTEEDFDHVLGTNLKGNWLVATEAARRMVAAGKGGAIVNVASILGERVAGGVAP YAISKAGVVQATKALALELARHGIRVNALLPGYVVTDLNRGFLTSPAGEKLRARIPSR RFGEVTDLDGPLLLLASDAGAAMSGATLAVDGAHLVSSL" sig_peptide 340213..340314 /locus_tag="Alide2_0313" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.868) with cleavage site probability 0.738 at residue 34" misc_feature 340234..340974 /locus_tag="Alide2_0313" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 340237..340965 /locus_tag="Alide2_0313" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature order(340267..340269,340273..340278,340282..340284, 340339..340347,340495..340503,340648..340656, 340693..340695,340705..340707,340783..340794) /locus_tag="Alide2_0313" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(340567..340569,340654..340656,340693..340695, 340705..340707) /locus_tag="Alide2_0313" /note="active site" /db_xref="CDD:187535" gene 340983..342023 /locus_tag="Alide2_0314" /db_xref="GeneID:10481330" CDS 340983..342023 /locus_tag="Alide2_0314" /inference="protein motif:PFAM:PF01636" /note="PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_004386258.1" /db_xref="GI:330822955" /db_xref="InterPro:IPR002575" /db_xref="GeneID:10481330" /translation="MSGPANPLPVEALADYLRAQGLAGSAPLQVRVLAGGQSNPTYRV TAGEGRDYVLRKKPPGTLIASAHAIDREYRVMKALADTGVPVPRMLHYCESGELLGTP FYVMEYLAGRVLMDQSLPGMEPAERHAIYREMNRVIAALHAVDYRAVGLGDYGKEGNY VGRQIARWSRQCRESTVPMNEAMHCLMDWLPEHLPSGDETTLVHGDYRLDNLVFHPTE PRVIGVLDWELSTLGHPLADLAYQCMAWRIPPSLWRGIAGLDLPALGIPQEAEYIAWY GAATGRDAVGHWDYYLAYNLFRMAAILHGIAQRAADGNAAAEDAVETGAKAGPLAELG WESAQRYTATRK" misc_feature 340983..341900 /locus_tag="Alide2_0314" /note="Predicted aminoglycoside phosphotransferase [General function prediction only]; Region: COG3173" /db_xref="CDD:32986" misc_feature 341064..341729 /locus_tag="Alide2_0314" /note="Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: ACAD10_11_like; cd05154" /db_xref="CDD:88617" misc_feature order(341091..341093,341103..341105,341139..341141, 341145..341147,341241..341243,341298..341309, 341598..341600,341610..341615,341619..341621, 341655..341660,341715..341717) /locus_tag="Alide2_0314" /note="putative active site [active]" /db_xref="CDD:88617" misc_feature order(341091..341093,341598..341600,341715..341717) /locus_tag="Alide2_0314" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:88617" misc_feature order(341103..341105,341139..341141,341145..341147, 341241..341243,341298..341309,341598..341600, 341610..341615,341619..341621,341655..341660) /locus_tag="Alide2_0314" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88617" gene complement(342121..342921) /locus_tag="Alide2_0315" /db_xref="GeneID:10481331" CDS complement(342121..342921) /locus_tag="Alide2_0315" /EC_number="4.2.99.18" /inference="protein motif:TFAM:TIGR00633" /note="TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_0227 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease III Xth" /protein_id="YP_004386259.1" /db_xref="GI:330822956" /db_xref="GO:0003677" /db_xref="GO:0004518" /db_xref="GO:0004519" /db_xref="InterPro:IPR000097" /db_xref="InterPro:IPR004808" /db_xref="InterPro:IPR005135" /db_xref="GeneID:10481331" /translation="MFKLTSLNLNGIRSATSKGVEAWIDQNRPDCICVQEIKAQSADM QGRFEELAGLRGHFHFAAKKGYSGVGIYTRHEPSDVLAGYGSQEFDAEGRYMELRFDT PSRRLSIISAYFPSGSSGEERQLAKYRFLDEFHPHLMRLKAEREFILCGDINIAHRQA DLKNWRSNQKNSGFLPEERAWMTKLLGDDTDGGLVDVYRRLQPDATDACYTWWSNRGQ AYANNVGWRLDYHLATPALAQLARTEAIYKGEKFSDHAPITVGYEMAL" misc_feature complement(342136..342915) /locus_tag="Alide2_0315" /note="Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; Region: Nape_like_AP-endo; cd10281" /db_xref="CDD:197336" misc_feature complement(order(342157..342162,342166..342168, 342235..342240,342244..342246,342250..342252, 342256..342258,342268..342270,342274..342282, 342286..342288,342418..342420,342424..342426, 342430..342432,342460..342462,342466..342468, 342553..342555,342568..342570,342574..342576, 342583..342585,342640..342642,342724..342729, 342793..342795,342808..342810,342814..342816, 342877..342894,342898..342900)) /locus_tag="Alide2_0315" /note="putative active site [active]" /db_xref="CDD:197336" misc_feature complement(order(342157..342159,342166..342168, 342238..342240,342244..342246,342250..342252, 342256..342258,342274..342282,342286..342288, 342418..342420,342424..342426,342430..342432, 342460..342462,342466..342468,342553..342555, 342568..342570,342574..342576,342583..342585, 342640..342642,342724..342729,342793..342795, 342808..342810,342814..342816,342877..342894, 342898..342900)) /locus_tag="Alide2_0315" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:197336" misc_feature complement(order(342157..342159,342460..342462, 342466..342468,342574..342576,342583..342585, 342814..342816,342898..342900)) /locus_tag="Alide2_0315" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197336" misc_feature complement(order(342157..342162,342235..342237, 342460..342462,342466..342468,342583..342585, 342814..342816,342898..342900)) /locus_tag="Alide2_0315" /note="putative catalytic site [active]" /db_xref="CDD:197336" misc_feature complement(order(342160..342162,342814..342816, 342892..342894)) /locus_tag="Alide2_0315" /note="metal binding site A [ion binding]; metal-binding site" /db_xref="CDD:197336" misc_feature complement(order(342157..342159,342238..342240, 342244..342246,342286..342288,342460..342462, 342466..342468,342574..342576,342583..342585)) /locus_tag="Alide2_0315" /note="putative AP binding site [nucleotide binding]; other site" /db_xref="CDD:197336" misc_feature complement(order(342157..342159,342460..342462, 342466..342468)) /locus_tag="Alide2_0315" /note="putative metal binding site B [ion binding]; other site" /db_xref="CDD:197336" gene 342932..343630 /locus_tag="Alide2_0316" /db_xref="GeneID:10481332" CDS 342932..343630 /locus_tag="Alide2_0316" /EC_number="2.4.2.10" /inference="protein motif:TFAM:TIGR00336" /note="TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: dia:Dtpsy_0228 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="orotate phosphoribosyltransferase" /protein_id="YP_004386260.1" /db_xref="GI:330822957" /db_xref="GO:0004588" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR004467" /db_xref="GeneID:10481332" /translation="MVTESAQGPVRDRLAQDFVRFAVESGVLRFGEFKTKAGRMSPYF FNAGLFDDGAKMGRLAQFYAQALVASGIEFDMLFGPAYKGIPLGATVAVELARLGRNV PFAYNRKEAKDHGEGGTLVGAPLKGRVLIIDDVMSAGTAARESIALIRAAGATPHAIA IALDRQEKATENGRDVDHSAVQYVRRELGMQVCAIARLADLLRYLEADGGDPQIHAHH ERVLAYRQRYGVDD" misc_feature 342971..343621 /locus_tag="Alide2_0316" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 343651..344355 /locus_tag="Alide2_0317" /db_xref="GeneID:10481333" CDS 343651..344355 /locus_tag="Alide2_0317" /inference="similar to AA sequence:KEGG:Dtpsy_0229" /note="KEGG: dia:Dtpsy_0229 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386261.1" /db_xref="GI:330822958" /db_xref="GeneID:10481333" /translation="MAGVRRMGGLLACAAGLALGALAPAWAQQGKTAQEVYTCIDRQG RRITSDRPIAECVDREQRVLDHTGTERRRIGPTLTEHERAAQEAQRRKEAEERARFLE ERRRERVLLARYPDEAAHQAEREAAIDQVEEVIVVAHKRIQALKAERRRIDVELEFYR GDPAKAPAKLQRQIAENDQALAEQQRFLVAQDLEKRRIHQRFDAELAQLRQLWAAQRA AATQWAQPPATAPVQK" sig_peptide 343651..343734 /locus_tag="Alide2_0317" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 28" gene complement(344424..345869) /locus_tag="Alide2_0318" /db_xref="GeneID:10481334" CDS complement(344424..345869) /locus_tag="Alide2_0318" /inference="protein motif:TFAM:TIGR00133" /note="TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; KEGG: dac:Daci_0351 glutamyl-tRNA(Gln) amidotransferase subunit B; SMART: Asn/Gln amidotransferase" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(Gln) amidotransferase subunit B" /protein_id="YP_004386262.1" /db_xref="GI:330822959" /db_xref="GO:0016874" /db_xref="InterPro:IPR004413" /db_xref="InterPro:IPR006075" /db_xref="InterPro:IPR018027" /db_xref="GeneID:10481334" /translation="MTAKLIQGYEVVIGFETHAQLATKAKIFSRASTAFGAEPNTQAC AVDLALPGTLPVMNREAVACAIKLGLALGSHIAPESIFARKNYFYPDLPKGYQISQFE IPVVQGGEVGFYLGDEKKTVRLVRAHLEEDAGKSLHEEFHGMSGIDLNRAGTPLLEIV TEPDMRSTEEAVAYAKALHQIVTWIGICDGNMQEGSFRCDANVSVRRPGQPLGTRREI KNLNSFKYMQQAIDYEIRWQIEQLEDGHAIQQATVLFDPDTGETRAMRTKEDAADYRY FPDPDLPPLVIAPEWVEQVKAAMPELPRAMAARFVQQYGLPEYDATTLTQSQAMAAYF EDAAKACGAPKLASNWVMGEISRRLNTEEIGMDAVKVSSQQLATLIGRIGDGTISNNA ARQVFEALWSGEGSDVDAVIDAKGLKQMNDSGALEKIIDEVIAANPANVEQYKAGKDK AFNALVGQVMKASKGKANPQQVNELLKAKLA" misc_feature complement(344430..345845) /locus_tag="Alide2_0318" /note="aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated; Region: gatB; PRK05477" /db_xref="CDD:180111" misc_feature complement(344985..345842) /locus_tag="Alide2_0318" /note="GatB/GatE catalytic domain; Region: GatB_N; pfam02934" /db_xref="CDD:145865" misc_feature complement(344430..344873) /locus_tag="Alide2_0318" /note="GatB domain; Region: GatB_Yqey; cl11497" /db_xref="CDD:159498" gene complement(345872..347362) /locus_tag="Alide2_0319" /db_xref="GeneID:10481335" CDS complement(345872..347362) /locus_tag="Alide2_0319" /EC_number="3.5.1.4" /inference="protein motif:HAMAP:MF_00120" /note="PFAM: Amidase; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: ajs:Ajs_0237 aspartyl/glutamyl-tRNA amidotransferase subunit A" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(Gln) amidotransferase subunit A" /protein_id="YP_004386263.1" /db_xref="GI:330822960" /db_xref="InterPro:IPR000120" /db_xref="InterPro:IPR004412" /db_xref="GeneID:10481335" /translation="MSSTVLHDMGVAQLAAALRGGQVSAVEAAQHFLARAKSHQHLGA YVALNEDATLAQARAQDASIAAGTAAPLAGVPIAHKDIFVTRDFPTTAASRMLAGYRS PFDATVVARLAEAGCVTLGKLNCDEFAMGGTNENSAVAPVGFDAPRPVRNPWDGARVP GGSSGGSAAAVAARLAPAVTGTDTGGSIRQPASFCGVTGIKPTYGRASRYGMIAFASS LDQAGPMARSAEDCALLLSAMCGPDPDRDSTSLDRPAEDFGRALGDSLEGLRIGVPAE FFGEGLAADVHAAVDAALKEYEKLGARLVPITLPRTDLSVPVYYILAPAEASSNLSRF DGVRYGYRAKDYADLLDMYKKTRAQGFGDEVKRRIMIGTYVLSEGYYDAYYLQAQKLR RMIADDFQAAFKECDLIAGPVAPTTAWRLGSQNDPVANYLADIYTLPASLAGLPGMSV PAGFGEGGLPVGLQLIGNYFQEARLLNAAHRLQQATDFHLRAPEGI" misc_feature complement(345881..347347) /locus_tag="Alide2_0319" /note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154" /db_xref="CDD:30503" misc_feature complement(345914..347311) /locus_tag="Alide2_0319" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene complement(347359..347658) /locus_tag="Alide2_0320" /db_xref="GeneID:10481336" CDS complement(347359..347658) /locus_tag="Alide2_0320" /inference="protein motif:TFAM:TIGR00135" /note="KEGG: aav:Aave_0293 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA(Gln) amidotransferase subunit C" /protein_id="YP_004386264.1" /db_xref="GI:330822961" /db_xref="InterPro:IPR003837" /db_xref="GeneID:10481336" /translation="MALTPQDIGRIAHLARLELSPAESERMLTQLNGFFGIVEKMRAV DTGGIAPLPHPVAAIQDVHLRLRDDVASEPDQREANQQSAPAVERGLFLVPKVIE" misc_feature complement(347362..347658) /locus_tag="Alide2_0320" /note="Glu-tRNAGln amidotransferase C subunit; Region: Glu-tRNAGln; cl00495" /db_xref="CDD:186035" gene 347864..348907 /locus_tag="Alide2_0321" /db_xref="GeneID:10481337" CDS 347864..348907 /locus_tag="Alide2_0321" /inference="protein motif:TFAM:TIGR00904" /note="KEGG: dia:Dtpsy_0233 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl" /codon_start=1 /transl_table=11 /product="MreB/Mrl family cell shape determining protein" /protein_id="YP_004386265.1" /db_xref="GI:330822962" /db_xref="InterPro:IPR004753" /db_xref="GeneID:10481337" /translation="MFGVFRRYFSTDLAIDLGTANTLIFARDKGIVLDEPSVVAIRHE GGPHGKKVIQAVGHEAKAMLGKVPGNIEAIRPMKDGVIADFVITEQMIKQFIKMVHPR SVLTPSPRIIICVPCGSTQVERRAIKDAAEAAGATAVYLIEEPMAAGIGAGLPVSEAS GSMVVDIGGGTTEVGVISLGGMVYKGSVRVGGDKFDESIINYIRRNYGMLIGEPTAES IKKNIGSAFPGSEVKEMEVKGRNLSEGVPRSFTISSNEVLEALTEPLNQIVSAVKTAL EQTPPELGADIAERGMMLTGGGALLRDLDRLLAEETGLPVLVAEEPLTCVVRGCGIAL ERMDRQGSIFTSE" misc_feature 347879..348901 /locus_tag="Alide2_0321" /note="rod shape-determining protein MreB; Provisional; Region: PRK13927" /db_xref="CDD:184401" misc_feature 348353..>348694 /locus_tag="Alide2_0321" /note="Cell division protein FtsA; Region: FtsA; cl11496" /db_xref="CDD:196250" gene 348937..349854 /locus_tag="Alide2_0322" /db_xref="GeneID:10481338" CDS 348937..349854 /locus_tag="Alide2_0322" /inference="protein motif:TFAM:TIGR00219" /note="KEGG: ajs:Ajs_0240 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreC" /protein_id="YP_004386266.1" /db_xref="GI:330822963" /db_xref="InterPro:IPR005223" /db_xref="InterPro:IPR007221" /db_xref="GeneID:10481338" /translation="MPLGTLDRTAPTLFKHGPSPLSRLTLYSALALFLMVADARFHVA DPLRKAVATVLYPLQWLMLQPVELAGKGAQYFQSLQAAQQAADEASKKMAQMSVRAGE ADQLLRENAELRQLLALRERLDTPAQAAQVLYDTADPYTRRIMVDRGQLAGVEPGSPV VDAAGVLGQVTRVFPMLSEVTLLIDRDQAIPVLNLRTGARSVAYGDPVAGPGGGMELR FTPANADVQEGDLLTTSGVDGLYPAGLPVARVLRVERRADSAFARIYCAPLAQVHGAR HVMVLKPLVADMPARPEPEPAPQKRGGRK" misc_feature 348973..349785 /locus_tag="Alide2_0322" /note="rod shape-determining protein MreC; Provisional; Region: PRK13922" /db_xref="CDD:184397" misc_feature 349324..349788 /locus_tag="Alide2_0322" /note="rod shape-determining protein MreC; Region: MreC; pfam04085" /db_xref="CDD:146620" gene 349851..350372 /locus_tag="Alide2_0323" /db_xref="GeneID:10481339" CDS 349851..350372 /locus_tag="Alide2_0323" /inference="protein motif:TFAM:TIGR03426" /note="KEGG: ajs:Ajs_0241 putative rod shape-determining MreD transmembrane protein; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreD" /protein_id="YP_004386267.1" /db_xref="GI:330822964" /db_xref="InterPro:IPR007227" /db_xref="GeneID:10481339" /translation="MIMPKGQQLLLPVSPAFIWASLLAALALNMLPLGRVVWTPDWVM VLLVFWGMHQPQRVGLGVAFAMGLCIDVNQSALLGQHALVYCGLMFGAQYTHRRLLWF GQLLQALQLLPLFFAAHAVELALRVVAGGGTLPGFEGLVAPLLEAAIWPLASWILLAP QRRPPDQDDNRPL" sig_peptide 349851..349925 /locus_tag="Alide2_0323" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.611) with cleavage site probability 0.356 at residue 25" misc_feature 349956..350342 /locus_tag="Alide2_0323" /note="rod shape-determining protein MreD; Region: MreD; cl01087" /db_xref="CDD:189144" gene 350389..352332 /locus_tag="Alide2_0324" /db_xref="GeneID:10481340" CDS 350389..352332 /locus_tag="Alide2_0324" /EC_number="2.4.1.129" /inference="protein motif:TFAM:TIGR03423" /note="TIGRFAM: Penicillin-binding protein 2; KEGG: dia:Dtpsy_0236 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2" /protein_id="YP_004386268.1" /db_xref="GI:330822965" /db_xref="InterPro:IPR001460" /db_xref="InterPro:IPR005311" /db_xref="InterPro:IPR017790" /db_xref="GeneID:10481340" /translation="MTELRNVEADTWRFRLRVFVLGVVVLLAFVLIAARLVVLQVVRH EDLADQAESNRTAIVPIVPNRGLIIDRNGVVLATNYSAYTLEITPSRAMDLEATIDEL AQIVDIQPRDRRRFKRLREESRSFDSLPIRTRLTDQEVARFAAQRYRFPGVEIKARLF RNYPLGEVASHAIGYIGRINQREKERIEDSDDAANYRGTDYIGKLGVEQSFESTLHGH TGFERMETSAGGHAVRRLNSHPATPGNTVMLSLDIKLQKLVEDMFGERRGALVALDPR NGEVLALVSKPTFDPNLFVEGIDQENWQALNESINKPLLNRALRGTYPPGSTYKPFMA LAALELKKRSPTQVYSDPGFFNYGGRTFRSHEGGLGGVDMHRAIQYSSNTYFYSLAVD MGVDVIHDFMKPLGFGQITGIDLGGEVRGVLPSTEWKRNTYKRPEMKRWYSGETVSLG IGQGYNNFTMLQLAVAEATLANGGTRYRPHLVKAVKDQVSGQVSEVQQPPGEPLGFNP KNVAIVHNALMAVNQAGTGRRVFMGAPYTSAGKTGTAQAVSLGQNVKYNARLLEEHQR DHSLFAAFAPVEEPRIAVAVIVENAGFGAAAAAPIVRRVFDYWLLGQYPGEQDLAAVA KGQAGAPVGVPRRADEVSVVPEP" misc_feature 350506..352224 /locus_tag="Alide2_0324" /note="penicillin-binding protein 2; Region: pbp2_mrdA; TIGR03423" /db_xref="CDD:188321" misc_feature 350569..351099 /locus_tag="Alide2_0324" /note="Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717" /db_xref="CDD:190723" misc_feature 351190..352158 /locus_tag="Alide2_0324" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene complement(352348..353259) /locus_tag="Alide2_0325" /db_xref="GeneID:10481341" CDS complement(352348..353259) /locus_tag="Alide2_0325" /EC_number="3.5.3.1" /inference="protein motif:TFAM:TIGR01229" /note="TIGRFAM: Arginase, subgroup; KEGG: dia:Dtpsy_0241 arginase; PFAM: Ureohydrolase" /codon_start=1 /transl_table=11 /product="arginase" /protein_id="YP_004386269.1" /db_xref="GI:330822966" /db_xref="GO:0004053" /db_xref="GO:0046872" /db_xref="InterPro:IPR006035" /db_xref="InterPro:IPR014033" /db_xref="GeneID:10481341" /translation="MPPVTLIGAPTDVGASVLGASMGPDALRIAGIARALRALEPDVQ DMGNLSGPGNPQAAPSGGFRHLAEVTAWSQAVFSAALAALDAGRLPLLMGGDHCLAIG SISAAARHCRLRGRRLKVLWLDAHADANTPASSPSGNLHGMPVACLLGHGPRQLTQLA GAAPALQARQITLLGVRSVDATEKRFVNAQGIEVYDMRSIDELGMRSVMQAALADVDE NTHLHLSFDMDGLDPTIAPGVGTPVRGGPTYRETQLCMEMLADSGALGSVDVMELNPA LDVRNQTAELAVDLLESLFGKSTLMRA" misc_feature complement(352360..353244) /locus_tag="Alide2_0325" /note="Arginase family; Region: Arginase; cl00306" /db_xref="CDD:193759" gene complement(353273..354031) /locus_tag="Alide2_0326" /db_xref="GeneID:10481342" CDS complement(353273..354031) /locus_tag="Alide2_0326" /inference="protein motif:PFAM:PF01925" /note="PFAM: Protein of unknown function DUF81; KEGG: aav:Aave_0304 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386270.1" /db_xref="GI:330822967" /db_xref="InterPro:IPR002781" /db_xref="GeneID:10481342" /translation="MEWIIVSLASLLAGFVDAIVGGGGLILVPALFATFTNAPPATLL GTNKSASICGTAMATWQYSRRVQMPWRAMLPAAGAGFTGSFFGAWTVTVVSADFLRKL LPLILLAVLLYTLAKKELGRHHEPRFAGRMETALACLIGLAIGFYDGFFGPGAGSFFV FAFVRLLGYDFLNASVSAKLLNLATNIAAIILFASKGHVWWHFALPLAVANVAGSLLG THMALRHGTGFVRAIFILVVSLLILKTGYDAFLR" misc_feature complement(353288..354031) /locus_tag="Alide2_0326" /note="Predicted permeases [General function prediction only]; Region: COG0730; cl00498" /db_xref="CDD:186038" misc_feature complement(353300..354010) /locus_tag="Alide2_0326" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene complement(354278..355960) /locus_tag="Alide2_0327" /db_xref="GeneID:10481343" CDS complement(354278..355960) /locus_tag="Alide2_0327" /EC_number="1.1.99.1" /inference="protein motif:PRIAM:1.1.99.1" /note="KEGG: ajs:Ajs_0249 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal" /codon_start=1 /transl_table=11 /product="Choline dehydrogenase" /protein_id="YP_004386271.1" /db_xref="GI:330822968" /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR007867" /db_xref="GeneID:10481343" /translation="MSDTTFDYIIIGGGTAGALLANRLSADPRSRVLLVEAGRKDDYH WIHIPVGYLYCIGNPRTDWLYQTEPDAGLNGRSLRYPRGKTLGGCSSINGMIYMRGQA RDYDQWAQITGDDAWRWDNVLPAFRRHEDHWRLDRPGNADEAFERLHGNKRTGSTGEW RVDRQRLRWDILDAFAQAAQQAGIPATDDFNRGTNEGVGYFEVNQKNGWRWNTAKAFL RPTCYGRPNFELWTSAQATRLALERQPDGRLRCTGVQAWTGDEMVTAHAQRELILCAG AVNSPQLLQLSGIGPGALLKQHGIDVVLDLPGVGANLQDHLQIRAVYKVQNTPTLNQM AASLAGKAKIGLEYLLKRSGPMSMAPSQLGAFTRSRPDLPYPNLEYHVQPLSLEAFGE PLHGFPAFTASVCNLNPTSRGSVNIKSPDFRAAPAIAPNYLSTPEDRQVAADSLRLTR RIVAQPALAPYRPEEYKPGPQYQSDEELARLAGDIATTIFHPVGTTRMGHVDDPQAVL DPQMRVRDGRGGVVAGLRVVDAGAMPTITSGNTNSPTLMMAEMAAQWIRSAA" misc_feature complement(354290..355960) /locus_tag="Alide2_0327" /note="choline dehydrogenase; Validated; Region: PRK02106" /db_xref="CDD:179368" misc_feature complement(354305..354736) /locus_tag="Alide2_0327" /note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199" /db_xref="CDD:191229" gene 356227..357345 /locus_tag="Alide2_0328" /db_xref="GeneID:10481344" CDS 356227..357345 /locus_tag="Alide2_0328" /inference="protein motif:TFAM:TIGR00056" /note="KEGG: ajs:Ajs_0250 hypothetical protein; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386272.1" /db_xref="GI:330822969" /db_xref="InterPro:IPR003453" /db_xref="GeneID:10481344" /translation="MSALTPPSVVQDGTATPRALPQGDWVAAAFADRRAWRRLAAQLK ACGPGHAWSLQGLARLDHVGAQVLWNHWGRAWPAQVDLSAAQREMLERVARFSTPCAP APPWRLADQIDRLGVLVLRALGHLADMVELVGQLLLDLLRLVRNPARAPWRDISGHVY QMGAKALHITALVGFLIGVVLAYLMSLQLRQFGAEAFIVNILGISLIRELGPMLGAIL VAGRSGSAITAQIGVMRVTEELDAMRVMGIAHGFRLVMPRALALGLAMPLIALWTTLA ALAGGMLAADLTMGISSAYFLQALPAAVKVSNLWLAMAKSVVFGVFIALIGCHWGLRV KPNTQSLGEGTTASVVSAITMVIVVDALFAVAFKNLGF" misc_feature 356683..357327 /locus_tag="Alide2_0328" /note="Domain of unknown function DUF140; Region: DUF140; cl00510" /db_xref="CDD:186046" gene 357348..358151 /locus_tag="Alide2_0329" /db_xref="GeneID:10481345" CDS 357348..358151 /locus_tag="Alide2_0329" /EC_number="3.6.3.31" /inference="protein motif:PRIAM:3.6.3.31" /note="PFAM: ABC transporter-like; KEGG: ajs:Ajs_0251 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="polyamine-transporting ATPase" /protein_id="YP_004386273.1" /db_xref="GI:330822970" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481345" /translation="MPGTSPVVDIRGLATVFGKGDAAFTVHDDLQLAVDRGEILSLVG GSGTGKTVLLRHILGLTRPTRGSVTVLGRPAAELGGEGASSRVGMLFQQGALFSAFSV LDNIAFALRELGTLPHALVDAAAMVKLRLVGLKPEHATRMPADLSGGMVKRVALARAL IMDPPLLLLDEPTAGLDPNSSDEFCGLLRELHAALGLTVIMVTHDLDTLFALSTRVAV LADRHVITSGTPQQVARFDHPFVDHFFRGERGRRAMAQPPAAAPASKEA" misc_feature 357348..358100 /locus_tag="Alide2_0329" /note="ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127" /db_xref="CDD:31324" misc_feature 357369..358079 /locus_tag="Alide2_0329" /note="ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex...; Region: ABC_Org_Solvent_Resistant; cd03261" /db_xref="CDD:73020" misc_feature 357477..357500 /locus_tag="Alide2_0329" /note="Walker A/P-loop; other site" /db_xref="CDD:73020" misc_feature order(357486..357491,357495..357503,357621..357623, 357855..357860,357957..357959) /locus_tag="Alide2_0329" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73020" misc_feature 357612..357623 /locus_tag="Alide2_0329" /note="Q-loop/lid; other site" /db_xref="CDD:73020" misc_feature 357783..357812 /locus_tag="Alide2_0329" /note="ABC transporter signature motif; other site" /db_xref="CDD:73020" misc_feature 357843..357860 /locus_tag="Alide2_0329" /note="Walker B; other site" /db_xref="CDD:73020" misc_feature 357867..357878 /locus_tag="Alide2_0329" /note="D-loop; other site" /db_xref="CDD:73020" misc_feature 357945..357965 /locus_tag="Alide2_0329" /note="H-loop/switch region; other site" /db_xref="CDD:73020" gene 358151..359128 /locus_tag="Alide2_0330" /db_xref="GeneID:10481346" CDS 358151..359128 /locus_tag="Alide2_0330" /inference="protein motif:PFAM:PF02470" /note="PFAM: Mammalian cell entry-related; KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein" /codon_start=1 /transl_table=11 /product="Mammalian cell entry related domain-containing protein" /protein_id="YP_004386274.1" /db_xref="GI:330822971" /db_xref="InterPro:IPR003399" /db_xref="GeneID:10481346" /translation="MENKSHALAAGIFVIVVAALLAGLGMWLTRDQTAYQIYELSSKD SVSGLQPQAPVRYKGVAVGKVTRIGFDPEAPGNVLIRIAVNTTAPISTTTFATLGYQG VTGLAHVQLDDADAPLPQPAPGASGLPRLPLQTSTFSQVAEQGPAIMAQVQQATERIN TLLGDENQQRFATALQQLGAAAGSIDQLVRHLDNTVSTRLDPALAGVPALTQDAQQTL HALRQAGSSAAGAADEVRQAVRALNAEGGALAEIASGAKSLTTAADRFGRVTLPSLNR AADETARAARRLGRTATGINDNPQSLIYGPGRAAAAPGEPGFVAPPNQP" misc_feature 358151..>358975 /locus_tag="Alide2_0330" /note="ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463" /db_xref="CDD:31652" misc_feature 358280..>358405 /locus_tag="Alide2_0330" /note="mce related protein; Region: MCE; cl03606" /db_xref="CDD:186584" gene 359139..359819 /locus_tag="Alide2_0331" /db_xref="GeneID:10481347" CDS 359139..359819 /locus_tag="Alide2_0331" /inference="protein motif:PFAM:PF03886" /note="KEGG: ajs:Ajs_0253 putative lipoprotein; manually curated; PFAM: Protein of unknown function DUF330" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386275.1" /db_xref="GI:330822972" /db_xref="InterPro:IPR005586" /db_xref="GeneID:10481347" /translation="MKTIETIAVCACWKGARAVFCMMLAALAAGCSVLPAPPVRADVY DFGPGPMQPAGDAQAAVPLAPIVLAAVDTVGMPEGSSALLYRLAYANVQQLRPYTQAR WSQPPADLLAQALRERLGQRRMVLSGDGGAALQLDQIRQASVLRVQLEEFSQIFSTPD ASTGLVRVRAMLADAGPAGEALQAQRVFIARRPAATSDAAGGARALAEAAAQVADELA HWVQQQGR" sig_peptide 359139..359264 /locus_tag="Alide2_0331" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.861) with cleavage site probability 0.728 at residue 42" misc_feature 359184..359717 /locus_tag="Alide2_0331" /note="Protein of unknown function (DUF330); Region: DUF330; cl01135" /db_xref="CDD:194047" gene complement(359866..360072) /locus_tag="Alide2_0332" /pseudo /db_xref="GeneID:10481348" gene 360273..361202 /locus_tag="Alide2_0333" /db_xref="GeneID:10481349" CDS 360273..361202 /locus_tag="Alide2_0333" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bph:Bphy_6198 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386276.1" /db_xref="GI:330822973" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481349" /translation="MGESGPLPHSPSPSVARRIDPYSLRLFVATAQAGSIVRAAQQEH IAASALGRRLSDLEHAFGTPLLVRSPRGIALTDAGRLVLARGRKIDDDLQALVREVQT EGDEVRGTVRLYANMSSVVGFLPERLKRFMAAYPQVAVSLHEEDTQQVVRACLDDRAD VGVGAQMAVPAGLDAWHFAQDPLHVVMPAGHPLAAQAAVGFGQVLGHALIGVRQGGAL DRTMHERAQALGQRFAPAVSVGSFDAVCRMVEAGLGIALIPRSAAAAYAGSATFALRP LDEPWAARSLHLYALHRSPQPRAVQALLDCLRG" misc_feature 360327..361196 /locus_tag="Alide2_0333" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 360342..360512 /locus_tag="Alide2_0333" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 360600..361193 /locus_tag="Alide2_0333" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature order(360645..360650,360654..360659,360666..360668, 360678..360680,360684..360704,360978..360995, 361011..361016,361020..361025) /locus_tag="Alide2_0333" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 361283..363292 /locus_tag="Alide2_0334" /db_xref="GeneID:10481350" CDS 361283..363292 /locus_tag="Alide2_0334" /inference="protein motif:PFAM:PF00330" /note="PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; KEGG: cti:RALTA_B0856 putative hydrolyase" /codon_start=1 /transl_table=11 /product="aconitate hydratase domain-containing protein" /protein_id="YP_004386277.1" /db_xref="GI:330822974" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR001030" /db_xref="GeneID:10481350" /translation="MATDVSPSCGAAPAALRFNPRMLFLSRSPAPIHAALRGEPVALA AALPLRDDVSTDEITPIAILTHYDEKLGRYPYTGLQVQGQRPVAPGALARSGIEVVVA GKRYGKGSSREHSPAAERLAGVRLVIAESFERIYRQNADNIGLLTSTDMGLVQRIAAG EAIALEELLVGRDALAAAIVRSGGLLRFGQACLRGMRPAPVPTAPAAPGPRTLFEKIV ARHALATAFTPAHPAAGEGAFVRADWRFIHEYYTGMAAHMLHASLGRPLALRDPASIV VFEDHTSYVEESPAHVRGGLVPDVRRMVDAQRRFVADHGLRCHRTLTEAEAARDDGSN VAGISHAMVTERYALPGQLVVGTDSHTPHSGALGCAAFGVGTTDMANAFVTGAVRMTL PASLRVELDGRLAPGVTAKDVALHLLALPFIREGGGVGKVFEFAGAAIAAMSTDERAT LTNMTAELGGFTGIVAPDAETVRFLRERRGVDFAPESWMRSDPGAHYAHVIRVDCAQV GPMVAAPGDPGNGQPLARLARPVRIDIAYGGSCTAGKREDFDHYHAVLRWAADRGLRV APGVALYLQFGTTAVRDHCAAAGYLDAFERVGARILQPSCGACGNCGPGGSSDPGQVT VSAINRNFPGRGGPGSVWLASPPTVAASAIAGEILSFEELQARHA" misc_feature 361427..>361729 /locus_tag="Alide2_0334" /note="Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme...; Region: Aconitase_swivel; cl00215" /db_xref="CDD:185833" misc_feature 361610..361618 /locus_tag="Alide2_0334" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73200" misc_feature 361916..363256 /locus_tag="Alide2_0334" /note="3-isopropylmalate dehydratase large subunit; Reviewed; Region: PRK00402" /db_xref="CDD:179006" misc_feature 362090..363256 /locus_tag="Alide2_0334" /note="Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle; Region: Aconitase; cl00285" /db_xref="CDD:185883" misc_feature order(362354..362359,363110..363112,363170..363172, 363185..363187) /locus_tag="Alide2_0334" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153129" misc_feature order(362360..362362,362903..362905,363098..363100, 363107..363112,363167..363169) /locus_tag="Alide2_0334" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153129" gene 363330..364319 /locus_tag="Alide2_0335" /db_xref="GeneID:10481351" CDS 363330..364319 /locus_tag="Alide2_0335" /inference="similar to AA sequence:KEGG:RALTA_B0858" /note="KEGG: cti:RALTA_B0858 conserved hypothetical protein; UPF0065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386278.1" /db_xref="GI:330822975" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481351" /translation="MQTFPLTRRAALACMAASAFVLAPPGAAAQFAASDKPVRMVVPL APGSTVDAVARALGPGLGRALGRPMVVENVAGAGGIPGTGQVVKAPKDGSVLGMVSSN HVINPGIYKSIPYDSLKDITPIAVLATVPLVLVVHPSVPVKTVGELLAYARARPGTLN LGSAGNGSTLHLAGELLVSETGIDIRHVPYRGTGPLVTDLMGGQVQMGFVSVSQVAAQ VKAGTLRALAVSTRQRSASLPDVPTMAEAGVPNYGFDAWIALIGPAGMPRPVVDGYAA AVRSAMASPEAHAAIVGQGLSVLDIGPDAAPAFFQSELHKHQKLVKQSGATLD" sig_peptide 363330..363416 /locus_tag="Alide2_0335" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.598 at residue 29" misc_feature 363432..364304 /locus_tag="Alide2_0335" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 363537..364307 /locus_tag="Alide2_0335" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 364328..364861 /locus_tag="Alide2_0336" /db_xref="GeneID:10481352" CDS 364328..364861 /locus_tag="Alide2_0336" /inference="protein motif:TFAM:TIGR01935" /note="KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA; TIGRFAM: Ribonuclease E inhibitor RraA; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase" /codon_start=1 /transl_table=11 /product="regulator of ribonuclease activity A" /protein_id="YP_004386279.1" /db_xref="GI:330822976" /db_xref="GO:0008428" /db_xref="InterPro:IPR005493" /db_xref="InterPro:IPR010203" /db_xref="GeneID:10481352" /translation="MASEQAPIRPGESTADLCDRLGPLARVCGAPLRAYGGLRQACAP VATLCAQGSADGVRAWLEQPGEGRILVIDGGVPEHALLGDRLAALGLANGWRGAIVHG AVRDVAALAGLDFAVLALGATPRRAAGGGAGAPGCTLELAGVRVAPGDWACLDRDGVV FVSARPGWETACSTRRP" misc_feature 364367..364825 /locus_tag="Alide2_0336" /note="Demethylmenaquinone methyltransferase; Region: Methyltransf_6; cl00480" /db_xref="CDD:186024" gene complement(364812..365447) /locus_tag="Alide2_0337" /db_xref="GeneID:10481353" CDS complement(364812..365447) /locus_tag="Alide2_0337" /inference="protein motif:TFAM:TIGR00427" /note="KEGG: dia:Dtpsy_0253 multiple antibiotic resistance (MarC)-related protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related" /codon_start=1 /transl_table=11 /product="multiple antibiotic resistance (MarC)-like protein" /protein_id="YP_004386280.1" /db_xref="GI:330822977" /db_xref="InterPro:IPR002771" /db_xref="GeneID:10481353" /translation="MDLKPLITLLAIVNPLAIVPFFIHYTNGFSAAQRRRTIQVAAFS AFCVIAACALVGLQILDFFNISLQSFQVGGGLLLLISAMNMLNAQPAEAKPHTNELEA GAQKAAQGSSIAVVPLTIPLLTGPAAMSTVVIYADRAQTLWQHLALVGYGVVVGAATA LCFALAEPIERALGKTGINVMTRLMGLILAALSVEVMADGLSKLFPILAAR" misc_feature complement(364818..365441) /locus_tag="Alide2_0337" /note="MarC family integral membrane protein; Region: MarC; cl00919" /db_xref="CDD:186259" gene 365561..366250 /locus_tag="Alide2_0338" /db_xref="GeneID:10481354" CDS 365561..366250 /locus_tag="Alide2_0338" /EC_number="3.1.1.45" /inference="protein motif:PRIAM:3.1.1.45" /note="KEGG: dia:Dtpsy_0255 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase" /codon_start=1 /transl_table=11 /product="carboxymethylenebutenolidase" /protein_id="YP_004386281.1" /db_xref="GI:330822978" /db_xref="InterPro:IPR002925" /db_xref="GeneID:10481354" /translation="MGQWVDLTSGDGFVFPAWVARTDGAPRGAVVVLQEIFGVNTHIR SVADRFAARGYLAVAPSTFARVQKDVDLGYGPEDMQAGMALKAAVEGLPAPGVLPDIQ AAINYAARQSGRKVGVVGYCWGGLLAWRAACLAEGLSAAVPYYGGGITSAEEVARRPR VPVLAHFGERDRWITQDGVQAFAQAHPEAQVHVYPADHGFNCDQRASYDEAAALNARE RTMAFLARYVG" misc_feature 365603..366241 /locus_tag="Alide2_0338" /note="Dienelactone hydrolase family; Region: DLH; pfam01738" /db_xref="CDD:190087" gene complement(366314..367882) /locus_tag="Alide2_0339" /db_xref="GeneID:10481355" CDS complement(366314..367882) /locus_tag="Alide2_0339" /inference="protein motif:TFAM:TIGR00711" /note="KEGG: dia:Dtpsy_0256 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1" /codon_start=1 /transl_table=11 /product="EmrB/QacA subfamily drug resistance transporter" /protein_id="YP_004386282.1" /db_xref="GI:330822979" /db_xref="InterPro:IPR004638" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10481355" /translation="MASPAHPAPLPPPPLTGSARTWGTLALSAATFMNVLDTSIANVS LPAIAGDLGVSPTQGTWVITSFAVANAIAVPLTGWLSQRFGQVRLFVASVTLFVIASL LCGLAPNMAMLIAARALQGFVAGPMIPLSQSLLLSSYPRALAGLAMAMWSMTTLIAPV TGPLLGGWITDNMAWPWIFYINVPVGIVAVLVTWGIFHKRETVRRKLPIDSIGLALLV IWVGAMQIMLDIGKEHDWFESPWVVACALVAAVGLVAFLIWERGDDHPVVDLTLFRNR NFWAGALATAVGYGLFFGNVVLLPLWLQQYMGYTATQAGEVMAPVGLLAMVLSPWVGK NIGRTDPRRFATFAFLVFALVLWMRSNFNTQADLATIMVPTIVQGIAMAFFFIPLVTV TLSEITPDRIPAASGLSNFMRITAGAVGTSIATTLWERRATLHHAQLTEGLHHGNTAL AQALQGLQVGGFTPEQALAQVERLVNQQAFMLAANDIFYASAVLFLFLIPLVWLAHAP HASKGSADAAAGAH" misc_feature complement(366368..367813) /locus_tag="Alide2_0339" /note="drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711" /db_xref="CDD:129794" misc_feature complement(<367301..367813) /locus_tag="Alide2_0339" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(367406..367408,367424..367429, 367436..367441,367475..367477,367484..367489, 367496..367501,367508..367513,367649..367654, 367658..367663,367673..367675,367682..367687, 367694..367696,367745..367750,367754..367762, 367769..367771)) /locus_tag="Alide2_0339" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature complement(366596..>367075) /locus_tag="Alide2_0339" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(367885..369084) /locus_tag="Alide2_0340" /db_xref="GeneID:10481356" CDS complement(367885..369084) /locus_tag="Alide2_0340" /inference="protein motif:PFAM:PF00529" /note="PFAM: Secretion protein HlyD; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein" /codon_start=1 /transl_table=11 /product="secretion protein HlyD family protein" /protein_id="YP_004386283.1" /db_xref="GI:330822980" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10481356" /translation="MNAPQSPAAKPARRQALLTLAGVVVLAGAAWGLYDWLVASHYEN TDNAYVQGNVIQITPQTGGTVTAILADETDLVRAGSALVRLDPADARVALQQAEAALA QAVRQARQLYANNATLAAQVRLREADVARAQADIARAQDDLRRRQMLTGDGAVSKEEL QHAQSQLDTARTQLAAAQAGVAAAREQLASNQALTQGVAVQEHPSVRAAAAKVREAYL ADRRTALPAPVDGYVAKRSVQLGQRVAAGTPLMAIVPLSQVWVDANFKENQLRHLRLG QPAKLTADLYGKKVEYTGTVAGLGVGTGAAFALLPAQNATGNWIKVVQRVPVRIALDA AQLAEHPLRVGLSMEVTVDTKERGGPALAEAPRQEAVAQTAVYASLDEGADADVARII NANLGAR" misc_feature complement(367894..369081) /locus_tag="Alide2_0340" /note="multidrug efflux system protein EmrA; Provisional; Region: PRK15136" /db_xref="CDD:185090" gene complement(369119..370540) /locus_tag="Alide2_0341" /db_xref="GeneID:10481357" CDS complement(369119..370540) /locus_tag="Alide2_0341" /inference="protein motif:TFAM:TIGR01845" /note="KEGG: dia:Dtpsy_0258 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="NodT family RND efflux system outer membrane lipoprotein" /protein_id="YP_004386284.1" /db_xref="GI:330822981" /db_xref="GO:0005215" /db_xref="GO:0008289" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010131" /db_xref="GeneID:10481357" /translation="MKNQLSTPPALLHAAALAAALLALTGCADMSGIAPQARLRDAAT LVDPGAPAAAVAPDWWRAFGDAQLDALVQQALDGNPGLRQAAARIARAEAFTRSARAA LGPQVNASADLTRQRYSENGPYPPGQAGSILDIDTARLSGSWEIDFFGKNRAALESAL GTARAARADADAARLLLAANVVHAYLQLARLQEQLQVAERTLAQRGEVLRLVQQRVSA GLDTRLELRQSEGALPEARQQIEALREQAALTRNALGALAGEPKAALALTPPALAAMQ SAAIPAVLPADLLGRRPDVAAARWRVEASAQDVAVARAQFYPNVSLTAFVGLASMGLG NFVEAGSREWGVGPALRLPVFDAGRLRANLAGKSADLDAAVESYNAALLDAVRDAADQ LASSASVERQIAEQRQAGEAAEAAYAIARKRYEAGLGNYLQVLSAETQVLAQRRLAVD LAARRLDAQAGVMRALGGGYAAS" sig_peptide complement(370454..370540) /locus_tag="Alide2_0341" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.778) with cleavage site probability 0.462 at residue 29" misc_feature complement(369134..370366) /locus_tag="Alide2_0341" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature complement(369764..370339) /locus_tag="Alide2_0341" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(<369407..369670) /locus_tag="Alide2_0341" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(370570..371082) /locus_tag="Alide2_0342" /db_xref="GeneID:10481358" CDS complement(370570..371082) /locus_tag="Alide2_0342" /inference="protein motif:PFAM:PF01047" /note="KEGG: ajs:Ajs_0264 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator" /protein_id="YP_004386285.1" /db_xref="GI:330822982" /db_xref="GO:0003700" /db_xref="InterPro:IPR000835" /db_xref="GeneID:10481358" /translation="MKSPREEDDPAGDGTCPLSDPSLPVPFEVERSIGFQLRRITTLL GAEVERRMEPLGLTDAQWKPLLRLLLDPPGTAAALARMCHLDAGGLTRLLDRLEAKGL CQRERSLEDRRVVNIALTPEGRAVAERLPAILTGVQDELLAGFSEAEEAQLRDFLARI YANTRAMPGS" misc_feature complement(370597..370971) /locus_tag="Alide2_0342" /note="Transcriptional regulators [Transcription]; Region: MarR; COG1846" /db_xref="CDD:32031" misc_feature complement(370636..370935) /locus_tag="Alide2_0342" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(371154..372329) /locus_tag="Alide2_0343" /db_xref="GeneID:10481359" CDS complement(371154..372329) /locus_tag="Alide2_0343" /inference="protein motif:PFAM:PF01544" /note="PFAM: Mg2+ transporter protein, CorA-like; KEGG: dia:Dtpsy_0260 Mg2 transporter protein CorA family protein" /codon_start=1 /transl_table=11 /product="Mg2 transporter protein CorA family protein" /protein_id="YP_004386286.1" /db_xref="GI:330822983" /db_xref="GO:0046873" /db_xref="InterPro:IPR002523" /db_xref="GeneID:10481359" /translation="MPEKSPQPFRVFHLQPGVGASELAQLPGTPPAQGFYWIACTRAA FSAELPRLQAMLQAVAGLQLVDLHVSDLLNAQLPSHYDYTSQYDLLVVRRLGTAQADA GAPLARPAARGGLPVLRRIDTSPVGFAVFDQVLLSVHPGDCGVRDAYAARLLSQAAPA APAATPAEAVVRELRAGPVAGARLPTSPADLMVRVVGHIVDNYLDLRRELSRQLDHWQ TELLRPSTRFTDWSALLGARLALHQLDEICEDQRAAVQAWSEALSTWTPQPDTPAALR ELDLLKVRTRDVLEHIERVVHHVRRLEQSTEAVLQMHFSVQSNRTNDIMRTLTVLTAV FLPLNLIAGIFGMNFEFIPFVHTREGFWWAMGSMAAIAAALTVFFWRKRYLTRTGRS" misc_feature complement(371187..372233) /locus_tag="Alide2_0343" /note="CorA-like Mg2+ transporter protein; Region: CorA; pfam01544" /db_xref="CDD:144948" misc_feature complement(371175..>371486) /locus_tag="Alide2_0343" /note="magnesium/nickel/cobalt transporter CorA; Provisional; Region: PRK11085; cl00459" /db_xref="CDD:187900" gene complement(372369..373397) /locus_tag="Alide2_0344" /db_xref="GeneID:10481360" CDS complement(372369..373397) /locus_tag="Alide2_0344" /EC_number="4.2.1.24" /inference="protein motif:PRIAM:4.2.1.24" /note="KEGG: ajs:Ajs_0266 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase" /codon_start=1 /transl_table=11 /product="Porphobilinogen synthase" /protein_id="YP_004386287.1" /db_xref="GI:330822984" /db_xref="InterPro:IPR001731" /db_xref="GeneID:10481360" /translation="MWGTITPMHLSSPTPFPANRPRRLRRDAFTRDLVRENRLTPHDF IYPVFVHEGTQLRVPVPSMPGVERLSLDLLLPVAGECVRLGIPYLALFPSIDAQLKTP DGKEALNPEGLIPRVVRALKKEFPQLGVMTDVALDPYTSHGQDGMLDDTGYILNDETV EILVGQALAHAQAGVDMVAPSDMMDGRIGAIRDALEAHGHIHTRIMAYSAKYASAFYG PFRDAVGSAANLGRSNKDVYQMDPANTDEALREVALDLAEGADMVMVKPGMPYLDVLR RVKDEFKVPTFAYQVSGEYAMLKAAAANGWLDHDKVMLEALLAFKRAGADGILTYFAL DAARLLTK" misc_feature complement(372378..373340) /locus_tag="Alide2_0344" /note="Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS_aspartate_rich; cd04823" /db_xref="CDD:88599" misc_feature complement(order(372432..372434,372441..372443, 372453..372455,372462..372464,372507..372509, 372579..372593,372645..372650,372657..372659, 372666..372677,372684..372689,372750..372758, 372843..372848,372927..372932,373206..373208, 373215..373217,373287..373295,373320..373325, 373332..373340)) /locus_tag="Alide2_0344" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88599" misc_feature complement(order(372633..372635,372645..372647, 372843..372845,373338..373340)) /locus_tag="Alide2_0344" /note="allosteric magnesium binding site [ion binding]; other site" /db_xref="CDD:88599" misc_feature complement(order(372405..372407,372522..372524, 372531..372533,372600..372602,372681..372683, 372693..372695,372720..372722,372735..372740, 372747..372749,372765..372767,372855..372857, 372963..372965,372987..372989,372993..372995, 372999..373001)) /locus_tag="Alide2_0344" /note="active site" /db_xref="CDD:88599" misc_feature complement(order(372852..372854,372963..372965, 372987..372989)) /locus_tag="Alide2_0344" /note="aspartate-rich active site metal binding site; other site" /db_xref="CDD:88599" misc_feature complement(order(372600..372602,372765..372767)) /locus_tag="Alide2_0344" /note="Schiff base residues; other site" /db_xref="CDD:88599" gene 373430..374152 /locus_tag="Alide2_0345" /db_xref="GeneID:10481361" CDS 373430..374152 /locus_tag="Alide2_0345" /inference="protein motif:PFAM:PF03099" /note="PFAM: Biotin/lipoate A/B protein ligase; KEGG: dia:Dtpsy_0262 biotin/lipoate A/B protein ligase" /codon_start=1 /transl_table=11 /product="biotin/lipoate A/B protein ligase" /protein_id="YP_004386288.1" /db_xref="GI:330822985" /db_xref="GO:0003824" /db_xref="InterPro:IPR004143" /db_xref="GeneID:10481361" /translation="MSDPQTFLTTIAQEQAWNHRQMLEPVAQPHFRVWTYGAPAIVLG CSQRRFEEEARARLAPGTDLLLRPSGGGAVLVGPWMVSCSVVLPLDHPWVQGRLPDSY QGLGRLHVQVLAALGVAAEALPPAQVDAANARTGPVVPWACYGSLAPWEVVDAAGRKL VGLAQRRQRTGVLLVAGTLVTPPDWALLCHALGQSGDEAAMRRRTVSCSQLGAPAPDA QRLARALHEVLGSGLAPAACRC" misc_feature 373520..>373969 /locus_tag="Alide2_0345" /note="Lipoate-protein ligase A [Coenzyme metabolism]; Region: LplA; COG0095" /db_xref="CDD:30444" gene 374300..374728 /locus_tag="Alide2_0346" /db_xref="GeneID:10481362" CDS 374300..374728 /locus_tag="Alide2_0346" /inference="protein motif:PFAM:PF03653" /note="PFAM: Uncharacterised protein family UPF0093; KEGG: dia:Dtpsy_0263 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386289.1" /db_xref="GI:330822986" /db_xref="InterPro:IPR005265" /db_xref="GeneID:10481362" /translation="MLWVKAFHIVFIASWFAGLFYLPRIFVNLAMVQPGSVAERDRLL LMARKLLRFTTLLALPAIGLGLWLWLGYGIGMGPGNGWLHAKLAVVVLVVLYHWVCAR LLRALTDNTDQHGHRWFRWFNELPVLLLIAAVVLVVVKPF" misc_feature 374303..374725 /locus_tag="Alide2_0346" /note="Uncharacterised protein family (UPF0093); Region: UPF0093; cl00863" /db_xref="CDD:193956" gene 374754..375851 /locus_tag="Alide2_0347" /db_xref="GeneID:10481363" CDS 374754..375851 /locus_tag="Alide2_0347" /inference="protein motif:PFAM:PF04892" /note="PFAM: VanZ-like; KEGG: ajs:Ajs_0269 VanZ family protein" /codon_start=1 /transl_table=11 /product="VanZ family protein" /protein_id="YP_004386290.1" /db_xref="GI:330822987" /db_xref="InterPro:IPR006976" /db_xref="GeneID:10481363" /translation="MHKTSAWPLALIYAALIVFASLFPFEGWREQGISPWVFFTARIP PPYWTWFDVNLNVAGYAPLGFLLALALLRTGWPRAAVPVAALAGALLSFAMEYLQIYL PRRVPSNMDLALNAAGALLGALAAALLERLGAIARWSRFRELWFVPQARGALVLLALW PWALLFPAALPFGLGQVWDRLEAALTELLEDTPFIGWLPVREPVLEPLPPGGELLAVA LGLLIPCLLGYGVMRHVGRRVVFALAAATVGVAVTALSALLSYGPTHAWEWLTPAARA GLGVGLGAALALAAVPRRASAALLLLALMLHLNLLNEAPASAYFAQTLQAWEQGRFIR FYGLGQWLGWLWPYAALMYVVLHVSRRDTQS" sig_peptide 374754..374816 /locus_tag="Alide2_0347" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.691) with cleavage site probability 0.679 at residue 21" gene 375861..376202 /locus_tag="Alide2_0348" /db_xref="GeneID:10481364" CDS 375861..376202 /locus_tag="Alide2_0348" /inference="similar to AA sequence:KEGG:Dtpsy_0265" /note="KEGG: dia:Dtpsy_0265 ferredoxin-like protein" /codon_start=1 /transl_table=11 /product="ferredoxin-like protein" /protein_id="YP_004386291.1" /db_xref="GI:330822988" /db_xref="GeneID:10481364" /translation="MSDTTTPYYQRHIFFCLNERSNGENCCAQHGAQQAFERCKMLVK QQGLMGPGKVRVNKAGCMDRCAGGPIAVVYPEGVWYTYVDEADIDEIVESHLKNGVVV ERLRTPPELGR" misc_feature 375891..376145 /locus_tag="Alide2_0348" /note="Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:; Region: TRX_Fd_family; cd02980" /db_xref="CDD:48529" misc_feature order(375894..375896,375900..375902,376032..376040) /locus_tag="Alide2_0348" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48529" misc_feature order(375906..375908,375939..375941,376041..376043, 376053..376055) /locus_tag="Alide2_0348" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48529" gene 376286..376921 /locus_tag="Alide2_0349" /db_xref="GeneID:10481365" CDS 376286..376921 /locus_tag="Alide2_0349" /inference="similar to AA sequence:KEGG:Dtpsy_0266" /note="KEGG: dia:Dtpsy_0266 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_004386292.1" /db_xref="GI:330822989" /db_xref="GeneID:10481365" /translation="MNAQTERLSLTGPAGAIEAVRDAPVAGAPVRGVAVIAHPHPLFG GTMDNKVVQTLARAFVASGFAAVRFNFRGVGGTAGVHDAGDGELDDLLGVVRQVAPEG PVALAGFSFGAFVTSHALARLWGERRVESAVLVGTATSRFTVAPLPPEAHMRTLVVHG EHDETVPLATVMDWARPQTLPVTVVPGGGHFFHGQLPLLKGLVMRHLQSMP" misc_feature 376298..376906 /locus_tag="Alide2_0349" /note="Predicted hydrolase of the alpha/beta superfamily [General function prediction only]; Region: COG2945" /db_xref="CDD:32768" misc_feature <376580..376876 /locus_tag="Alide2_0349" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 377023..378186 /locus_tag="Alide2_0350" /db_xref="GeneID:10481366" CDS 377023..378186 /locus_tag="Alide2_0350" /EC_number="3.5.2.6" /inference="protein motif:PRIAM:3.5.2.6" /note="PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: ajs:Ajs_0272 penicillin-binding protein 6; SMART: Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_004386293.1" /db_xref="GI:330822990" /db_xref="InterPro:IPR001967" /db_xref="InterPro:IPR012907" /db_xref="GeneID:10481366" /translation="MKSLLSSLRSLACAALMAPAILWAQAPQPPEIAARNYLLVDVTA GQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPGSRMFI DPKMQVPVDDLLKGMIVQSGNDATMALAEGVGGTAENFVRLMNEQAKALGMKNTAYKN PEGLTEPGHTTTARDLATLATRLIQDFPEYMHYYSTKQYRYEGTPASNSNNRNTLLFR DPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLSIVLGAASENSRANESQKLLNW GYTAFDAVKLFDAGQAADTPAVWKGTQSTLKIGRPDAIVVTVPSGSAGKLSTEIVRKD PLIAPFTKGQPIGALKVRLGGEQVAEVPLVALEDVGQAGIFGRAWDAIRLWIK" sig_peptide 377023..377097 /locus_tag="Alide2_0350" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 25" misc_feature 377092..378183 /locus_tag="Alide2_0350" /note="D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: DacC; COG1686" /db_xref="CDD:31872" misc_feature 377098..377850 /locus_tag="Alide2_0350" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" misc_feature 377863..378135 /locus_tag="Alide2_0350" /note="Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; pfam07943" /db_xref="CDD:191901" gene 378288..378665 /locus_tag="Alide2_0351" /db_xref="GeneID:10481367" CDS 378288..378665 /locus_tag="Alide2_0351" /inference="protein motif:TFAM:TIGR00981" /note="KEGG: dia:Dtpsy_0268 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12/S23" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S12" /protein_id="YP_004386294.1" /db_xref="GI:330822991" /db_xref="GO:0003735" /db_xref="InterPro:IPR005679" /db_xref="InterPro:IPR006032" /db_xref="GeneID:10481367" /translation="MPTINQLVRQGRTVEVVKSKSPAMENCPQRRGVCTRVYTTTPKK PNSALRKVAKVRLTNGFEVISYIGGEGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGSL DLQGVKDRKQARSKYGAKRPKKA" misc_feature 378294..378617 /locus_tag="Alide2_0351" /note="S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368" /db_xref="CDD:48341" misc_feature order(378297..378302,378306..378311,378318..378323) /locus_tag="Alide2_0351" /note="S17 interaction site [polypeptide binding]; other site" /db_xref="CDD:48341" misc_feature 378297..378299 /locus_tag="Alide2_0351" /note="S8 interaction site; other site" /db_xref="CDD:48341" misc_feature order(378321..378329,378363..378365,378369..378374, 378378..378380,378423..378428,378432..378440, 378459..378461,378483..378485,378492..378497, 378534..378539,378549..378554,378615..378617) /locus_tag="Alide2_0351" /note="16S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:48341" misc_feature order(378414..378419,378549..378551) /locus_tag="Alide2_0351" /note="streptomycin interaction site [chemical binding]; other site" /db_xref="CDD:48341" misc_feature 378417..378422 /locus_tag="Alide2_0351" /note="23S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:48341" misc_feature order(378420..378437,378495..378521) /locus_tag="Alide2_0351" /note="aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site" /db_xref="CDD:48341" gene 378829..379302 /locus_tag="Alide2_0352" /db_xref="GeneID:10481368" CDS 378829..379302 /locus_tag="Alide2_0352" /inference="protein motif:TFAM:TIGR01029" /note="KEGG: xtr:100494042 30S ribosomal protein S7-like; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S7" /protein_id="YP_004386295.1" /db_xref="GI:330822992" /db_xref="GO:0003735" /db_xref="InterPro:IPR000235" /db_xref="InterPro:IPR005717" /db_xref="GeneID:10481368" /translation="MPRRREVPKREILPDPKFGNVELSKFMNVIMEGGKKAVAERIIY GALELIEKKQPEKDALEVFVTAINNVKPMVEVKSRRVGGANYQVPVEVRPVRRLALSM RWIKEAARKRSEKSMAQRLANELMEATEGRGGAMKRRDEVHRMAEANKAFSHFRF" misc_feature 378829..379299 /locus_tag="Alide2_0352" /note="Ribosomal protein S7p/S5e; Region: Ribosomal_S7; cl00313" /db_xref="CDD:193762" gene 379389..381497 /locus_tag="Alide2_0353" /db_xref="GeneID:10481369" CDS 379389..381497 /locus_tag="Alide2_0353" /inference="protein motif:TFAM:TIGR00484" /note="TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: ajs:Ajs_0275 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal" /codon_start=1 /transl_table=11 /product="translation elongation factor G" /protein_id="YP_004386296.1" /db_xref="GI:330822993" /db_xref="GO:0003746" /db_xref="GO:0005525" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004540" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR005517" /db_xref="GeneID:10481369" /translation="MARKTPLERYRNIGISAHIDAGKTTTSERILFYTGVTHKLGEVH DGAATTDWMEQEQERGITITSSAVTCFWKGMDLSRPEHRINIIDTPGHVDFTIEVERS MRVLDGAVMVYCAVGGVQPQSETVWRQANKHKVPRLAFVNKMDRTGANFFKVYDQMKL RLNANPVPIVVPIGAEDSFQGVVDLLKMKAIIWDEASQGMKFEYGEIPAELVDTCKKW RENMVEAAAEASEELMNKYLEEGDLSEAEIIAGLRQRTIATEIQPMLCGSAFKNKGVQ RMLDAVLDLLPSPVDIPDVAGTDPDDHEKHLTRKADDNEKFSALAFKLMTDPFVGQLT FVRVYSGVLNKGDTVYNAVKGKKERIGRIVQMHANERQEIEEIRAGDIAACVGLKEVT TGDTLCDLDAPIMLEKMVFPEPVIAQAVEPKSKADQEKMGIALSRLASEDPSFRVRSD EESGQTIIAGMGELHLEIIVDRMKREFGVEANVGKPQVAYRETIRNTVKDVDGKFVRQ SGGKGQYGHVVFRLEPNEPGKGFEFLDEIKGGVVPREYIPAVQKGVEEALTSGVLAGY PVVDVKVALTFGSYHDVDSSEQAFKMAAIFGFKEAAKKANPVILEPMMAVEVETPEDY AGTVMGDLSSRRGMVQGMDDMVGGGKAIKAEVPLSEMFGYATQLRSMTQGRATYTMEF KHYAEAPRNVAEAIIAARAK" misc_feature 379389..381494 /locus_tag="Alide2_0353" /note="elongation factor G; Reviewed; Region: PRK00007" /db_xref="CDD:178789" misc_feature 379422..380255 /locus_tag="Alide2_0353" /note="Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved...; Region: EF-G; cd01886" /db_xref="CDD:133286" misc_feature 379437..379460 /locus_tag="Alide2_0353" /note="G1 box; other site" /db_xref="CDD:133286" misc_feature order(379440..379442,379446..379448,379458..379463, 379470..379472,379479..379484,379584..379589, 379662..379667,379734..379739,379845..379847, 379857..379859) /locus_tag="Alide2_0353" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133286" misc_feature order(379446..379448,379452..379463,379812..379817, 379821..379823,380190..380198) /locus_tag="Alide2_0353" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133286" misc_feature 379527..379586 /locus_tag="Alide2_0353" /note="Switch I region; other site" /db_xref="CDD:133286" misc_feature 379572..379574 /locus_tag="Alide2_0353" /note="G2 box; other site" /db_xref="CDD:133286" misc_feature 379650..379661 /locus_tag="Alide2_0353" /note="G3 box; other site" /db_xref="CDD:133286" misc_feature 379656..379712 /locus_tag="Alide2_0353" /note="Switch II region; other site" /db_xref="CDD:133286" misc_feature 379812..379823 /locus_tag="Alide2_0353" /note="G4 box; other site" /db_xref="CDD:133286" misc_feature 380190..380198 /locus_tag="Alide2_0353" /note="G5 box; other site" /db_xref="CDD:133286" misc_feature 380337..380585 /locus_tag="Alide2_0353" /note="EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide...; Region: EFG_mtEFG_II; cd04088" /db_xref="CDD:58095" misc_feature 380856..381206 /locus_tag="Alide2_0353" /note="EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor...; Region: EFG_mtEFG1_IV; cd01434" /db_xref="CDD:58274" misc_feature 381219..381455 /locus_tag="Alide2_0353" /note="EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor...; Region: EFG_mtEFG_C; cd03713" /db_xref="CDD:58065" gene 381731..382921 /locus_tag="Alide2_0354" /db_xref="GeneID:10481370" CDS 381731..382921 /locus_tag="Alide2_0354" /inference="protein motif:TFAM:TIGR00485" /note="KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu/EF1A, domain 2" /codon_start=1 /transl_table=11 /product="translation elongation factor Tu" /protein_id="YP_004386297.1" /db_xref="GI:330822994" /db_xref="GO:0003746" /db_xref="GO:0005525" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004160" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004541" /db_xref="InterPro:IPR005225" /db_xref="GeneID:10481370" /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAKKFGGEA KGYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGA ILVCSAADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLDK YEFPGDDTPIIRGSAKLALEGDQSDKGEPAILKLAEALDTYIPTPERAVDGTFLMPVE DVFSISGRGTVVTGRVERGIIKVGEEIEIVGIRETQKTTVTGVEMFRKLLDQGQAGDN VGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFY FRTTDVTGSIELPADKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVA KIIE" misc_feature 381731..382918 /locus_tag="Alide2_0354" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:178823" misc_feature 381761..382345 /locus_tag="Alide2_0354" /note="EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors; Region: EF_Tu; cd01884" /db_xref="CDD:133284" misc_feature 381785..381808 /locus_tag="Alide2_0354" /note="G1 box; other site" /db_xref="CDD:133284" misc_feature order(381788..381790,381794..381796,381806..381811, 381818..381820,381827..381832,381842..381844, 381926..381931,381983..381988,382055..382060, 382064..382075,382082..382084,382175..382177, 382187..382189,382265..382270) /locus_tag="Alide2_0354" /note="GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133284" misc_feature order(381794..381811,381869..381871,382136..382141, 382145..382147,382250..382258) /locus_tag="Alide2_0354" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133284" misc_feature 381896..381928 /locus_tag="Alide2_0354" /note="Switch I region; other site" /db_xref="CDD:133284" misc_feature 381914..381916 /locus_tag="Alide2_0354" /note="G2 box; other site" /db_xref="CDD:133284" misc_feature 381971..381982 /locus_tag="Alide2_0354" /note="G3 box; other site" /db_xref="CDD:133284" misc_feature 381977..382033 /locus_tag="Alide2_0354" /note="Switch II region; other site" /db_xref="CDD:133284" misc_feature 382136..382147 /locus_tag="Alide2_0354" /note="G4 box; other site" /db_xref="CDD:133284" misc_feature 382250..382258 /locus_tag="Alide2_0354" /note="G5 box; other site" /db_xref="CDD:133284" misc_feature 382367..382627 /locus_tag="Alide2_0354" /note="EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697" /db_xref="CDD:58088" misc_feature 382634..382903 /locus_tag="Alide2_0354" /note="Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts)...; Region: EFTU_III; cd03707" /db_xref="CDD:58073" misc_feature order(382670..382672,382676..382684,382736..382738, 382856..382864,382892..382894) /locus_tag="Alide2_0354" /note="Antibiotic Binding Site [chemical binding]; other site" /db_xref="CDD:58073" gene 382949..383260 /locus_tag="Alide2_0355" /db_xref="GeneID:10481371" CDS 382949..383260 /locus_tag="Alide2_0355" /inference="protein motif:HAMAP:MF_00508" /note="TIGRFAM: Ribosomal protein S10 subgroup; HAMAP: Ribosomal protein S10 subgroup; KEGG: vei:Veis_1263 30S ribosomal protein S10; PFAM: Ribosomal protein S10" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S10" /protein_id="YP_004386298.1" /db_xref="GI:330822995" /db_xref="InterPro:IPR001848" /db_xref="InterPro:IPR005731" /db_xref="GeneID:10481371" /translation="MSKQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAIVKGPVPLPT RMKRFDILRSPHVNKTSRDQLEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKL Q" misc_feature 382949..383254 /locus_tag="Alide2_0355" /note="Ribosomal protein S10p/S20e; Region: Ribosomal_S10; cl00314" /db_xref="CDD:193763" gene 383477..384151 /locus_tag="Alide2_0356" /db_xref="GeneID:10481372" CDS 383477..384151 /locus_tag="Alide2_0356" /inference="protein motif:TFAM:TIGR03625" /note="KEGG: dia:Dtpsy_0273 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L3" /protein_id="YP_004386299.1" /db_xref="GI:330822996" /db_xref="GO:0003735" /db_xref="InterPro:IPR000597" /db_xref="InterPro:IPR019927" /db_xref="GeneID:10481372" /translation="MSLSNSLGLLGRKVGMMRLFTDDGDAVPVTVVDVSNNRVTQVKT QENDGYVALQVTFGSRKASRVTKPEAGHLAKAGVEAGEIIREFPVTAEVAGKYAAGAT VPVADVFAVGQKVDVQGTSIGKGYAGTIKRHNFGSQRASHGNSRSHNVPGSIGMAQDP GRIFPGKKMTGHLGDATVTTQNLDVVRIDEARQLLLIKGAVPGSKGGFVTVRPAVKAK ASKGAN" misc_feature 383492..384133 /locus_tag="Alide2_0356" /note="Ribosomal protein L3; Region: Ribosomal_L3; cl00324" /db_xref="CDD:189082" gene 384151..384771 /locus_tag="Alide2_0357" /db_xref="GeneID:10481373" CDS 384151..384771 /locus_tag="Alide2_0357" /inference="protein motif:PFAM:PF00573" /note="PFAM: Ribosomal protein L4/L1e; KEGG: dia:Dtpsy_0274 50S ribosomal protein L4" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L4/L1e" /protein_id="YP_004386300.1" /db_xref="GI:330822997" /db_xref="GO:0003735" /db_xref="InterPro:IPR002136" /db_xref="GeneID:10481373" /translation="MQLELLNEQGQAASKVDVPETVFDRQYNEDLIHQIVVAYQANAR QGTRAQKDREQVKHSTKKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKIN KKMYRAGMAAILSQLAREGRLAVVDSLKLESPKTKVLADKFKAMNLQSVMVIADEVDE NLYLASRNLKNVFVVEPRYADPVSLVHYKKVLVTKGAIDKLKEMFA" misc_feature 384151..384768 /locus_tag="Alide2_0357" /note="Ribosomal protein L4/L1 family; Region: Ribosomal_L4; cl00325" /db_xref="CDD:197406" gene 384768..385082 /locus_tag="Alide2_0358" /db_xref="GeneID:10481374" CDS 384768..385082 /locus_tag="Alide2_0358" /inference="protein motif:PFAM:PF00276" /note="PFAM: Ribosomal protein L25/L23; KEGG: dia:Dtpsy_0275 50S ribosomal protein L23" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L25/L23" /protein_id="YP_004386301.1" /db_xref="GI:330822998" /db_xref="GO:0003735" /db_xref="InterPro:IPR013025" /db_xref="GeneID:10481374" /translation="MSTLKFDEGRLMQVLVAPIVSEKATMVAEKSNAVTFKVLQNATK PEIKAAVELMFKVEVKGVSVVNTKGKTKRFGKTMGRRDNVRKAYVLLKEGQELNLSGE AA" misc_feature 384801..385076 /locus_tag="Alide2_0358" /note="Ribosomal protein L23; Region: Ribosomal_L23; cl00326" /db_xref="CDD:185908" gene 385085..385909 /locus_tag="Alide2_0359" /db_xref="GeneID:10481375" CDS 385085..385909 /locus_tag="Alide2_0359" /inference="protein motif:TFAM:TIGR01171" /note="KEGG: dia:Dtpsy_0276 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L2" /protein_id="YP_004386302.1" /db_xref="GI:330822999" /db_xref="GO:0003723" /db_xref="GO:0003735" /db_xref="GO:0016740" /db_xref="InterPro:IPR005880" /db_xref="InterPro:IPR022666" /db_xref="InterPro:IPR022669" /db_xref="GeneID:10481375" /translation="MAVIKLKPTTPGQRGTVKISRDHLYKGDAFAPLLEPQFQKAGRN NNGHITTRHKGGGHKHHYRVVDFRRNKDAIPAKVERIEYDPNRTAHIALVCYADGERR YIIAPRNLEVGASIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKPGAGAQIARSAGT SATLLAREGVYAQVRMRSGEVRRIHIECRATIGEVANEEHSLRQLGKAGVKRWMGIRP TVRGVAMNPIDHPHGGGEGRTGEGRHAVDPWGNLTKGYRTRNNKRTQTMIVSRRKK" misc_feature 385085..385906 /locus_tag="Alide2_0359" /note="50S ribosomal protein L2; Validated; Region: rplB; PRK09374" /db_xref="CDD:181807" misc_feature 385208..385438 /locus_tag="Alide2_0359" /note="Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181" /db_xref="CDD:109247" misc_feature 385454..385834 /locus_tag="Alide2_0359" /note="Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947" /db_xref="CDD:146530" gene 385920..386195 /locus_tag="Alide2_0360" /db_xref="GeneID:10481376" CDS 385920..386195 /locus_tag="Alide2_0360" /inference="protein motif:TFAM:TIGR01050" /note="KEGG: xtr:100486557 30S ribosomal protein S19-like; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S19" /protein_id="YP_004386303.1" /db_xref="GI:330823000" /db_xref="GO:0003735" /db_xref="InterPro:IPR002222" /db_xref="InterPro:IPR005732" /db_xref="GeneID:10481376" /translation="MTRSLKKGPFVDHHLLAKVEKAIATKDKKPVKTWSRRSMVLPEF IGLTIAVHNGKQHVPVYVTDQMVGHKLGEFALTRTFKGHPADKKAKK" misc_feature 385920..386192 /locus_tag="Alide2_0360" /note="Ribosomal protein S19; Region: Ribosomal_S19; cl00350" /db_xref="CDD:185929" gene 386205..386537 /locus_tag="Alide2_0361" /db_xref="GeneID:10481377" CDS 386205..386537 /locus_tag="Alide2_0361" /inference="protein motif:TFAM:TIGR01044" /note="KEGG: dac:Daci_0396 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L22" /protein_id="YP_004386304.1" /db_xref="GI:330823001" /db_xref="GO:0003735" /db_xref="InterPro:IPR001063" /db_xref="InterPro:IPR005727" /db_xref="GeneID:10481377" /translation="MSETRAVLRGVRLSVDKGRLVADLIRGKKVDQALDILTFTQKKA AGIVKKVLESAIANAEHNDGADIDELKVKTIFVEQGTTLKRFTARAKGRGNRISKPTC HIYVTVGN" misc_feature 386217..386528 /locus_tag="Alide2_0361" /note="Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336" /db_xref="CDD:48343" misc_feature order(386217..386219,386283..386291,386295..386300, 386304..386309,386370..386387,386412..386429, 386523..386528) /locus_tag="Alide2_0361" /note="putative translocon binding site; other site" /db_xref="CDD:48343" misc_feature order(386223..386225,386229..386231,386238..386240, 386244..386252,386259..386261,386271..386273, 386280..386282,386364..386366,386376..386378, 386385..386387,386424..386426,386430..386438, 386442..386444,386451..386453,386487..386504) /locus_tag="Alide2_0361" /note="protein-rRNA interface [nucleotide binding]; other site" /db_xref="CDD:48343" gene 386555..387427 /locus_tag="Alide2_0362" /db_xref="GeneID:10481378" CDS 386555..387427 /locus_tag="Alide2_0362" /inference="protein motif:TFAM:TIGR01009" /note="TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: aav:Aave_0344 30S ribosomal protein S3; SMART: K Homology" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S3" /protein_id="YP_004386305.1" /db_xref="GI:330823002" /db_xref="GO:0003735" /db_xref="InterPro:IPR001351" /db_xref="InterPro:IPR004044" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR005704" /db_xref="InterPro:IPR008282" /db_xref="GeneID:10481378" /translation="MGQKIHPTGFRLSVSRNWASRWYASNRDFAGMLAEDIKVREFLK AKLKNAAVSRILIERPAKNARITIYSARPGVVIGKKGEDIENLKKELATRLGVPVAVN IEEVRKPEIDAKLIADSITQQLEKRIQFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGI EIARTEWYREGRVPLHTLRADIDYGTSEAKTTYGVIGVKVWVYKGDTLGRGDLPVAET PRPDDERRPRGPRRDGRPGDRAGRGGRRPMGGNAAPADGSDKPQGAGGADTTAVKRVR KTDAPATAADGKGE" misc_feature 386555..387190 /locus_tag="Alide2_0362" /note="30S ribosomal protein S3; Reviewed; Region: rpsC; PRK00310" /db_xref="CDD:178972" misc_feature 386558..386881 /locus_tag="Alide2_0362" /note="K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The...; Region: 30S_S3_KH; cd02412" /db_xref="CDD:48410" misc_feature 386786..386797 /locus_tag="Alide2_0362" /note="G-X-X-G motif; other site" /db_xref="CDD:48410" misc_feature 386909..387160 /locus_tag="Alide2_0362" /note="Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189" /db_xref="CDD:189441" gene 387430..387846 /locus_tag="Alide2_0363" /db_xref="GeneID:10481379" CDS 387430..387846 /locus_tag="Alide2_0363" /inference="protein motif:TFAM:TIGR01164" /note="KEGG: dia:Dtpsy_0280 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L10e/L16" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L16" /protein_id="YP_004386306.1" /db_xref="GI:330823003" /db_xref="GO:0003735" /db_xref="GO:0019843" /db_xref="InterPro:IPR000114" /db_xref="InterPro:IPR016180" /db_xref="GeneID:10481379" /translation="MLQPARRKFRKEQKGRNTGIATRGNSVAFGDFGLKCTDRGRLTA RQIEAARRAISRHVKRGGRIWIRVFPDKPISTKPAEVRMGNGKGNPEYYVAEIQPGKV VFEIVGVPEELAREAFRLAAAKLPLRTTFVARQIGA" misc_feature 387496..387825 /locus_tag="Alide2_0363" /note="Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433" /db_xref="CDD:88606" misc_feature order(387496..387498,387502..387507,387514..387516, 387562..387567,387574..387576,387583..387585, 387595..387597,387604..387606,387622..387630, 387634..387636,387640..387642,387652..387657, 387676..387690,387730..387732,387784..387789, 387796..387801) /locus_tag="Alide2_0363" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88606" misc_feature 387541..387546 /locus_tag="Alide2_0363" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88606" misc_feature order(387577..387585,387592..387597) /locus_tag="Alide2_0363" /note="putative antibiotic binding site [chemical binding]; other site" /db_xref="CDD:88606" misc_feature order(387604..387606,387613..387618,387622..387624, 387748..387750) /locus_tag="Alide2_0363" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:88606" misc_feature order(387670..387675,387682..387687) /locus_tag="Alide2_0363" /note="L27 interface [polypeptide binding]; other site" /db_xref="CDD:88606" gene 387858..388055 /locus_tag="Alide2_0364" /db_xref="GeneID:10481380" CDS 387858..388055 /locus_tag="Alide2_0364" /inference="protein motif:TFAM:TIGR00012" /note="KEGG: dia:Dtpsy_0281 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L29" /protein_id="YP_004386307.1" /db_xref="GI:330823004" /db_xref="GO:0003735" /db_xref="InterPro:IPR001854" /db_xref="GeneID:10481380" /translation="MTKAAELRQKDVAGLEAEIKSLQKAHFGLRMQKATQQLGNTATL KATRRDIARAKTILAEKQAAK" misc_feature 387870..388040 /locus_tag="Alide2_0364" /note="Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where...; Region: Ribosomal_L29_HIP; cd00427" /db_xref="CDD:88602" misc_feature order(387870..387872,387879..387881,387981..387983, 388011..388016,388020..388025,388035..388037) /locus_tag="Alide2_0364" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88602" misc_feature order(387870..387878,387882..387884,387894..387899, 387903..387908,387915..387920,387927..387932, 387939..387941,387948..387953,387975..387977, 387984..387986,387996..387998,388005..388010, 388017..388022,388029..388031) /locus_tag="Alide2_0364" /note="putative translocon interaction site; other site" /db_xref="CDD:88602" misc_feature order(387918..387920,387930..387932,387939..387941, 387951..387953,387996..387998) /locus_tag="Alide2_0364" /note="signal recognition particle (SRP54) interaction site; other site" /db_xref="CDD:88602" misc_feature order(387936..387938,387945..387950) /locus_tag="Alide2_0364" /note="L23 interface [polypeptide binding]; other site" /db_xref="CDD:88602" misc_feature 387957..387962 /locus_tag="Alide2_0364" /note="trigger factor interaction site; other site" /db_xref="CDD:88602" gene 388069..388338 /locus_tag="Alide2_0365" /db_xref="GeneID:10481381" CDS 388069..388338 /locus_tag="Alide2_0365" /inference="protein motif:TFAM:TIGR03635" /note="KEGG: dia:Dtpsy_0282 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S17" /protein_id="YP_004386308.1" /db_xref="GI:330823005" /db_xref="GO:0003735" /db_xref="InterPro:IPR000266" /db_xref="InterPro:IPR019984" /db_xref="GeneID:10481381" /translation="MTEAKPSLKRTLVGKVVSDKRAKTVTVLVERRVKHPIYDKIMIK SSKYHAHDENGEYKMGDTVEITESRPLSKTKNWVATRLVQKAALV" misc_feature 388087..388326 /locus_tag="Alide2_0365" /note="Ribosomal protein S17; Region: Ribosomal_S17; cl00351" /db_xref="CDD:189087" gene 388418..388924 /locus_tag="Alide2_0366" /db_xref="GeneID:10481382" CDS 388418..388924 /locus_tag="Alide2_0366" /inference="protein motif:PFAM:PF08534" /note="PFAM: Redoxin; KEGG: ajs:Ajs_0288 redoxin domain-containing protein" /codon_start=1 /transl_table=11 /product="Redoxin domain-containing protein" /protein_id="YP_004386309.1" /db_xref="GI:330823006" /db_xref="GO:0016491" /db_xref="InterPro:IPR013740" /db_xref="GeneID:10481382" /translation="MIKVGDQLPTATLMEYVEVEGNGCSIGPNPVDVQKAAAGKTIAL FAVPGAFTPTCSAKHVPGYVEQAEALKAAGVDEIWCLAVNDAFVMGAWARDQKTAGKV RMLADGDAAFAKAVGLTLDLNGKGLGLRSNRYSMLVKDGKVATLNVEAPGKFEVSDAA TLLTQAKS" misc_feature 388427..388906 /locus_tag="Alide2_0366" /note="Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5...; Region: PRX5_like; cd03013" /db_xref="CDD:48562" misc_feature order(388571..388573,388580..388582,388814..388816) /locus_tag="Alide2_0366" /note="catalytic triad [active]" /db_xref="CDD:48562" misc_feature order(388574..388576,388670..388672,388676..388678, 388739..388744,388805..388807) /locus_tag="Alide2_0366" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48562" gene complement(389030..389578) /locus_tag="Alide2_0367" /db_xref="GeneID:10481383" CDS complement(389030..389578) /locus_tag="Alide2_0367" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dia:Dtpsy_0284 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-like N-acetyltransferase" /protein_id="YP_004386310.1" /db_xref="GI:330823007" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10481383" /translation="MDTLDQCCLLLEKESPRPMDHRPVVTLLSPTLPHEMEAVRKIFQ EYADSLDVDLSFQAFADELATLPGDYAPPRGHLLLAEVEGSIAGCCALRPLDTADYPN ACEMKRLYVRKAFRGFGLGRQLAEAVLDLARQAGYACVLLDTLDGMESARALYAELGF VEIPPYYHNPIAGSHYLKADIF" misc_feature complement(389150..389350) /locus_tag="Alide2_0367" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(389213..389218,389246..389254)) /locus_tag="Alide2_0367" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(389593..390321) /locus_tag="Alide2_0368" /db_xref="GeneID:10481384" CDS complement(389593..390321) /locus_tag="Alide2_0368" /inference="similar to AA sequence:KEGG:Dtpsy_0285" /note="KEGG: dia:Dtpsy_0285 cytochrome b561" /codon_start=1 /transl_table=11 /product="cytochrome b561" /protein_id="YP_004386311.1" /db_xref="GI:330823008" /db_xref="InterPro:IPR011577" /db_xref="GeneID:10481384" /translation="MACGADAAAGHNGRIFLGLGLGSAHHAAHGTRLGLPTRLFHWAI VATTIALVVTAKVGGNAMPWHMRLGLLMLALLAFRLAWGLVGGHWSRFANFLYSPGHL SGYLAGRGDETRDDVGHSPLGALSVFTLLAQVCSRLRSDDQIASAGSLAHLAPGEWVD LASWYHKDVGQYLLVAFVVLHLCAIAFYTLVRRRPLVRAMVRGDKQLPRPAPSARDDL ASRIGAAAILAAACVLAWWVASLG" misc_feature complement(389707..390219) /locus_tag="Alide2_0368" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene complement(390570..391073) /locus_tag="Alide2_0369" /db_xref="GeneID:10481385" CDS complement(390570..391073) /locus_tag="Alide2_0369" /inference="protein motif:PFAM:PF08534" /note="PFAM: Redoxin; KEGG: dia:Dtpsy_0287 redoxin domain protein" /codon_start=1 /transl_table=11 /product="Redoxin domain-containing protein" /protein_id="YP_004386312.1" /db_xref="GI:330823009" /db_xref="GO:0016491" /db_xref="InterPro:IPR013740" /db_xref="GeneID:10481385" /translation="MGFKKWLVAGAVAAGVAVGAVVVLGSGQSVAPQSTFVLLDGSQQ TTADLKGKVTLVNFWATSCTTCVAEMPEIVATYDKYKDKGFETLAVAMSYDPPSYVVN FTETRKLPFKVAIDNTGAVAKAWGDVKLTPSTFIVNKRGEIVKSYVGAPDFGELHKLI ERLLAEA" sig_peptide complement(390996..391073) /locus_tag="Alide2_0369" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.763 at residue 26" misc_feature complement(390627..390971) /locus_tag="Alide2_0369" /note="TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing...; Region: TlpA_like_family; cd02966" /db_xref="CDD:48515" misc_feature complement(order(390876..390878,390885..390887)) /locus_tag="Alide2_0369" /note="catalytic residues [active]" /db_xref="CDD:48515" gene 391146..391796 /locus_tag="Alide2_0370" /db_xref="GeneID:10481386" CDS 391146..391796 /locus_tag="Alide2_0370" /inference="similar to AA sequence:KEGG:Dtpsy_0288" /note="KEGG: dia:Dtpsy_0288 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386313.1" /db_xref="GI:330823010" /db_xref="GeneID:10481386" /translation="MPAWDWAGREKFAGPGACLGIMPAMSRPTACLPVAASALALLAC SPALDWRSVPLPEAGITLSLPCKPERAARPVDLGAGVVELSMVGCRADGATFALSHMP LADPSQAGAALARWRTAVLARMQAGPQAQAGTAFVPRQALDLPQSLRMVVRGRGADGA EVVAEAVWFARLEGRQARLYHAVVYAPQPRTAAADTFFTGLALAAVSAQRRHRAAP" gene 391818..392228 /locus_tag="Alide2_0371" /db_xref="GeneID:10481387" CDS 391818..392228 /locus_tag="Alide2_0371" /inference="protein motif:PFAM:PF03610" /note="PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component" /codon_start=1 /transl_table=11 /product="PTS system fructose subfamily IIA component" /protein_id="YP_004386314.1" /db_xref="GI:330823011" /db_xref="InterPro:IPR004701" /db_xref="GeneID:10481387" /translation="MNTRLLIIAHAPLAHALRECALHVFSDCADDLLAMDVPPDEPPE QTLSKARALLAQHGQAPVLVLSDLFGATPCNVARRLVDDVHARLIAGVNLPMLLRAVC YRAEPLDALAVRALAGGTQGMLQVAAESNPTRTS" misc_feature <391905..392168 /locus_tag="Alide2_0371" /note="PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_man; cl00025" /db_xref="CDD:193618" misc_feature order(391926..391928,392031..392033,392121..392123) /locus_tag="Alide2_0371" /note="active pocket/dimerization site; other site" /db_xref="CDD:28890" misc_feature order(392016..392018,392031..392033) /locus_tag="Alide2_0371" /note="active site" /db_xref="CDD:28890" gene 392225..392494 /locus_tag="Alide2_0372" /db_xref="GeneID:10481388" CDS 392225..392494 /locus_tag="Alide2_0372" /inference="protein motif:TFAM:TIGR01003" /note="KEGG: dia:Dtpsy_0291 phosphocarrier, HPr family; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein" /codon_start=1 /transl_table=11 /product="phosphotransferase system, phosphocarrier protein HPr" /protein_id="YP_004386315.1" /db_xref="GI:330823012" /db_xref="GO:0005351" /db_xref="InterPro:IPR005698" /db_xref="GeneID:10481388" /translation="MIKSTITISNKLGLHARASAKLTKLAGSYPCDVWMSKGERRINA KSIMGVMMLAAGLGSQVEIETDGTQEQDAMDALLALIDGKFGEGE" misc_feature 392237..392467 /locus_tag="Alide2_0372" /note="Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367" /db_xref="CDD:29444" misc_feature 392237..392248 /locus_tag="Alide2_0372" /note="dimerization domain swap beta strand [polypeptide binding]; other site" /db_xref="CDD:29444" misc_feature order(392264..392266,392270..392275,392279..392284, 392294..392296,392303..392305,392357..392368, 392375..392380) /locus_tag="Alide2_0372" /note="regulatory protein interface [polypeptide binding]; other site" /db_xref="CDD:29444" misc_feature 392267..392269 /locus_tag="Alide2_0372" /note="active site" /db_xref="CDD:29444" misc_feature 392360..392362 /locus_tag="Alide2_0372" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:29444" gene 392513..394279 /locus_tag="Alide2_0373" /db_xref="GeneID:10481389" CDS 392513..394279 /locus_tag="Alide2_0373" /EC_number="2.7.3.9" /inference="protein motif:TFAM:TIGR01417" /note="TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: ajs:Ajs_0297 phosphoenolpyruvate--protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate-protein phosphotransferase" /protein_id="YP_004386316.1" /db_xref="GI:330823013" /db_xref="GO:0003735" /db_xref="InterPro:IPR000121" /db_xref="InterPro:IPR006318" /db_xref="InterPro:IPR008279" /db_xref="InterPro:IPR008731" /db_xref="GeneID:10481389" /translation="MTFSIHGLAIARGIAIGRAVLAASGSMEVAHYFIEPEQVQAEIA RVRGGRNAVIEELQRLQADMPPDAPPELAALLDVHLMLLQDEMLVSGVKHWITDRLYN AEWALTTQLEIISRQFDEMEDEYLRERKADLAQVVERILRRMKGVAGPMAPPPSRARR QAEAGAEAEYLQGDAADVPLVLVAHDLSPADMLQFKQSVFAGFVTDVGGKTSHTAIVA RSMDIPAVVGARLASQLVRQDDWIIIDGDAGTVIVDPTPIILAEYGFRQRQLALERER LTRLRHTPAVTLDAQAIELLANIEQPGDAAAALRAGAVGVGLFRSEFLFMGRGGRLPD EDEQYLAYREAVQCMEGLPVTIRTVDVGADKPLDKGYKDRSLNPALGLRAIRWSLSDP AMFRTQLRAMLRAAAHGPVRLLFPMLAHVSEIRQTLAQVDLARAELDARGAVYGPVQL GAMIEVPAAALIVQQFLRYFDFLSLGTNDLIQYTLAIDRADEAVAHLYEPLHPAVLRL VADVIAEGARQGKSVSVCGEMAGDVGMTRLLLGLGLRSFSMQPAQILAVKQEVLRVDA RKLADWALQVLASDDPAAMLAQ" misc_feature 392582..394264 /locus_tag="Alide2_0373" /note="Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]; Region: PtsA; COG1080" /db_xref="CDD:31278" misc_feature <392612..392899 /locus_tag="Alide2_0373" /note="PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524" /db_xref="CDD:191298" misc_feature 393047..393256 /locus_tag="Alide2_0373" /note="PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; cl01586" /db_xref="CDD:194171" misc_feature 393356..394207 /locus_tag="Alide2_0373" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(394346..395326) /locus_tag="Alide2_0374" /db_xref="GeneID:10481390" CDS complement(394346..395326) /locus_tag="Alide2_0374" /EC_number="2.8.1.8" /inference="protein motif:HAMAP:MF_00206" /note="KEGG: dia:Dtpsy_0293 lipoyl synthase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="lipoyl synthase" /protein_id="YP_004386317.1" /db_xref="GI:330823014" /db_xref="InterPro:IPR003698" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:10481390" /translation="MSTPEIVREAQSAEAYNPLAKQKAAAKLSRIPIKVERGEVLKKP EWIRVKAGSPTTRFYEIKQILREHKLHTVCEEASCPNIGECFGHGTATFMIMGDKCTR RCPFCDVGHGRPDPLDKEEPLNLAKTIAALRLKYVVITSVDRDDLRDGGSGHFVECIQ RIRELSPATQIEILTPDFRGRDDRALEILKAAPPDVMNHNLETVPRLYKEARPGSDYQ FSLNLLKKFKALHPDVPTKSGLMVGLGETDEEILQVMRDMRAHGIDMLTIGQYLAPSN SHLPVRRYVHPDTFKMFEAEAYKMGFSHAAVGAMVRSSYHADQQAHAAGV" misc_feature complement(394349..395212) /locus_tag="Alide2_0374" /note="lipoyl synthase; Provisional; Region: PRK05481" /db_xref="CDD:180115" misc_feature complement(394445..395029) /locus_tag="Alide2_0374" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(394514..394519,394604..394606, 394727..394729,394799..394807,394871..394876, 394904..394906,395003..395011,395015..395017, 395021..395023,395027..395029)) /locus_tag="Alide2_0374" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene complement(395344..396036) /locus_tag="Alide2_0375" /db_xref="GeneID:10481391" CDS complement(395344..396036) /locus_tag="Alide2_0375" /EC_number="2.3.1.181" /inference="protein motif:TFAM:TIGR00214" /note="TIGRFAM: Octanoyltransferase; KEGG: ajs:Ajs_0299 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase" /codon_start=1 /transl_table=11 /product="lipoate-protein ligase B" /protein_id="YP_004386318.1" /db_xref="GI:330823015" /db_xref="GO:0016415" /db_xref="InterPro:IPR000544" /db_xref="InterPro:IPR004143" /db_xref="GeneID:10481391" /translation="MQLRVLGRAGYADTVAAMQRFTEERTGDTADELWICEHPPVYTQ GIAGKRDHILVPGDIPVVATNRGGQVTHHGPGQVVAYPLMDLHRAGYYVKEYVHRIEE AVIRTLGHYGVTGHRVAGAPGIYVRPDDPGSHVRLPQRPLRREPGSAAPVPDFTGLAK IAALGIKVARHCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLSTIGVHTTWDDVAA VLGKQLASRLAP" misc_feature complement(395347..396036) /locus_tag="Alide2_0375" /note="Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057" /db_xref="CDD:187213" gene complement(396048..396344) /locus_tag="Alide2_0376" /db_xref="GeneID:10481392" CDS complement(396048..396344) /locus_tag="Alide2_0376" /inference="protein motif:PFAM:PF04359" /note="PFAM: Protein of unknown function DUF493; KEGG: dia:Dtpsy_0295 protein of unknown function DUF493" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386319.1" /db_xref="GI:330823016" /db_xref="InterPro:IPR007454" /db_xref="GeneID:10481392" /translation="MTTPANPPATDPRKDSLIEYPSRFPIKVMGANVNGFVHAVTEVA RRFDPDFDASTIELRDSRAGNYLGVTITITATSREQLDDLYRALSSHPMVKVVL" misc_feature complement(396051..396323) /locus_tag="Alide2_0376" /note="Protein of unknown function (DUF493); Region: DUF493; cl01102" /db_xref="CDD:194035" gene 396628..397020 /locus_tag="Alide2_0377" /db_xref="GeneID:10481393" CDS 396628..397020 /locus_tag="Alide2_0377" /inference="protein motif:PFAM:PF03899" /note="PFAM: ATPase, F0 complex, subunit I; KEGG: aav:Aave_0365 putative ATP synthase protein I" /codon_start=1 /transl_table=11 /product="ATP synthase I chain" /protein_id="YP_004386320.1" /db_xref="GI:330823017" /db_xref="GO:0015078" /db_xref="InterPro:IPR005598" /db_xref="GeneID:10481393" /translation="MEWRKRQPRLSVWRIVAVQAVVGVLAALLALLLTGRAQWAWSVG YGALSVVVPAALFARAMARRRTSAGAAVAGLFGWELVKIVVTVAMLAAAPRLVPGLSW LALLAGMVVTMKAYWVALLARPGVRRTD" sig_peptide 396628..396750 /locus_tag="Alide2_0377" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.934) with cleavage site probability 0.568 at residue 41" gene 397043..397906 /locus_tag="Alide2_0378" /db_xref="GeneID:10481394" CDS 397043..397906 /locus_tag="Alide2_0378" /inference="protein motif:TFAM:TIGR01131" /note="KEGG: dia:Dtpsy_0297 F0F1 ATP synthase subunit A; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATPase, F0 complex, subunit A" /codon_start=1 /transl_table=11 /product="ATP synthase F0 subunit A" /protein_id="YP_004386321.1" /db_xref="GI:330823018" /db_xref="GO:0015078" /db_xref="InterPro:IPR000568" /db_xref="GeneID:10481394" /translation="MAAEANAPTASEYIVHHLQHLQNVKQGFIVDFSVVNLDSIAISV LLGALMLLIFWSAARKASAGVPGRFQAAVEILVEMVDNQAKANIHNAQSRKFIAPLAL TVFVWIFLMNAMDMLPVDLLPWLWQHGTGDHHAYLRVVPTADLSTTLGLSSAVLLLCF YYSIKIKGLGGWIHELFTAPFGTSKNPLFAAILGVVNFAMQVIEYLAKTVSHGMRLFG NMYAGELVFMLIALMGGAAAMSLSGVLLPVGHIIAGSIWAIFHILIITLQAFIFMMLA LIYLGQAHDAH" misc_feature 397112..397903 /locus_tag="Alide2_0378" /note="ATP synthase A chain; Region: ATP-synt_A; cl00413" /db_xref="CDD:185980" gene 397958..398206 /locus_tag="Alide2_0379" /db_xref="GeneID:10481395" CDS 397958..398206 /locus_tag="Alide2_0379" /inference="protein motif:HAMAP:MF_01396" /note="TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: dac:Daci_0415 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C" /codon_start=1 /transl_table=11 /product="ATP synthase subunit c" /protein_id="YP_004386322.1" /db_xref="GI:330823019" /db_xref="InterPro:IPR000454" /db_xref="InterPro:IPR002379" /db_xref="InterPro:IPR005953" /db_xref="GeneID:10481395" /translation="MENILGLVALACGLIVGLGAIGASIGIALMGGKFLESSARQPEL INELQTKMFILAGLIDAAFLIGVAIALLFAFANPFVLA" sig_peptide 397958..398026 /locus_tag="Alide2_0379" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.952) with cleavage site probability 0.808 at residue 23" misc_feature <398054..398191 /locus_tag="Alide2_0379" /note="ATP synthase subunit C; Region: ATP-synt_C; cl00466" /db_xref="CDD:193830" gene 398245..398715 /locus_tag="Alide2_0380" /db_xref="GeneID:10481396" CDS 398245..398715 /locus_tag="Alide2_0380" /inference="protein motif:HAMAP:MF_01398" /note="TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: dia:Dtpsy_0299 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast" /codon_start=1 /transl_table=11 /product="ATP synthase subunit b" /protein_id="YP_004386323.1" /db_xref="GI:330823020" /db_xref="InterPro:IPR002146" /db_xref="InterPro:IPR005864" /db_xref="GeneID:10481396" /translation="MSINATLFVQAIVFLILVWFTMTFVWPPIAKALDERAQKIADGL AAADRARTELAAADQRVKQELAAASNETANRLADAERRAQAIIEEAKARATEEGNKIV AAARAEAEQQAIAAREALREQVAALAVKGAEQILRKEVNAGVHADLLNRLKTEL" misc_feature 398245..398712 /locus_tag="Alide2_0380" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" misc_feature 398254..398712 /locus_tag="Alide2_0380" /note="F0F1-type ATP synthase, subunit b [Energy production and conversion]; Region: AtpF; COG0711" /db_xref="CDD:31055" gene 398734..399276 /locus_tag="Alide2_0381" /db_xref="GeneID:10481397" CDS 398734..399276 /locus_tag="Alide2_0381" /inference="protein motif:TFAM:TIGR01145" /note="KEGG: dia:Dtpsy_0300 F0F1 ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit" /codon_start=1 /transl_table=11 /product="ATP synthase F1 subunit delta" /protein_id="YP_004386324.1" /db_xref="GI:330823021" /db_xref="GO:0015078" /db_xref="InterPro:IPR000711" /db_xref="GeneID:10481397" /translation="MAELATIARPYAEALYKACTGKAGTDLNGACAWVDELAAIAANP QLRQLLDNPKVTAEQLFDVITGVAKTALPEMAHNFLRTLLDNGRVQVLPEIATQFRAL VNQGNGSSDAVVYSAFPLDANALAELSATLQKRFARTLNLSVQTDESLIGGVRVVVGD EVLDTSVKARLEQMKAALTA" misc_feature 398734..399273 /locus_tag="Alide2_0381" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" misc_feature 398752..399267 /locus_tag="Alide2_0381" /note="ATP synthase delta (OSCP) subunit; Region: OSCP; pfam00213" /db_xref="CDD:189453" gene 399322..400881 /locus_tag="Alide2_0382" /db_xref="GeneID:10481398" CDS 399322..400881 /locus_tag="Alide2_0382" /inference="protein motif:TFAM:TIGR00962" /note="KEGG: aav:Aave_0370 F0F1 ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal" /codon_start=1 /transl_table=11 /product="ATP synthase F1 subunit alpha" /protein_id="YP_004386325.1" /db_xref="GI:330823022" /db_xref="GO:0005524" /db_xref="InterPro:IPR000194" /db_xref="InterPro:IPR000793" /db_xref="InterPro:IPR004100" /db_xref="InterPro:IPR005294" /db_xref="GeneID:10481398" /translation="MQLNPAEISELIKSRIEGLAASSDIRNQGTVVSVTDGIVRIHGL SDVMQGEMLEFPADADGQPSYGLALNLERDSVGAVILGAYEHISEGDTVKCTGRILEV PVGPELIGRVVNALGQPIDGKGPINAKMTDVIEKVAPGVIARQSVDQPLATGQKSIDS MVPVGRGQRELIIGDRQTGKTAVAIDAIIAQKGQGVTCIYVAIGQKASSIKNVVRSLE QAGAMDYTIVVAASASESAAMQYVSAYSGCTMGEYFRDRGQDALIVYDDLSKQAVAYR QVSLLLRRPPGREAFPGDVFYLHSRLLERAARVNADYVEAFTKGEVKGKTGSLTALPV IETQAGDVSAFVPTNVISITDGQIFLETSLFNAGIRPAINAGISVSRVGGAAQTKLIK GLSGGIRTDLAQYRELAAFAQFASDLDEATRKQLDRGARVTELLKQPQYSPLPISLMA ASLFAVNKGFMDDVDVKKILPFESGLHQFLKTSHAALLERLEQNRAFDKEGKDEAELT QAITAFKKSFV" misc_feature 399322..400878 /locus_tag="Alide2_0382" /note="F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281" /db_xref="CDD:181753" misc_feature 399394..399612 /locus_tag="Alide2_0382" /note="ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874" /db_xref="CDD:145823" misc_feature 399616..400470 /locus_tag="Alide2_0382" /note="F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132" /db_xref="CDD:29998" misc_feature order(399679..399684,399730..399735,399739..399744, 399751..399753,399757..399759,399847..399852, 399937..399948,399952..399957,399964..399966, 400147..400152,400168..400176,400180..400185, 400198..400200,400210..400212,400219..400221, 400231..400233,400375..400377,400384..400386, 400417..400422,400429..400431,400462..400464) /locus_tag="Alide2_0382" /note="beta subunit interaction interface [polypeptide binding]; other site" /db_xref="CDD:29998" misc_feature 399841..399864 /locus_tag="Alide2_0382" /note="Walker A motif; other site" /db_xref="CDD:29998" misc_feature order(399847..399849,399859..399867,399919..399921, 399934..399936,400117..400122,400129..400131, 400327..400329,400375..400377,400414..400416, 400429..400434,400462..400464) /locus_tag="Alide2_0382" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29998" misc_feature 400105..400119 /locus_tag="Alide2_0382" /note="Walker B motif; other site" /db_xref="CDD:29998" misc_feature 400495..>400701 /locus_tag="Alide2_0382" /note="ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306" /db_xref="CDD:144044" gene 400900..401766 /locus_tag="Alide2_0383" /db_xref="GeneID:10481399" CDS 400900..401766 /locus_tag="Alide2_0383" /inference="protein motif:TFAM:TIGR01146" /note="KEGG: dia:Dtpsy_0302 F0F1 ATP synthase subunit gamma; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit" /codon_start=1 /transl_table=11 /product="ATP synthase F1 subunit gamma" /protein_id="YP_004386326.1" /db_xref="GI:330823023" /db_xref="GO:0005524" /db_xref="InterPro:IPR000131" /db_xref="GeneID:10481399" /translation="MAAGKEIRGKIKSVENTKKITKAMEMVAASKMRKAQDRMRAARP FAEKVRNIAAHLGEANPEYVHPFMKVNDAKAAGVIVVTTDKGLCGGMNTNVLRAVTSK LRELQSQGVEAQAVAIGNKGLGFLNRIGAKVVAQSVGLGDTPHLEKLIGPVKVLLDAY AEGKINAVYLSYTKFINTMKQESVVERLLPLSSEQMKADKSGPSWDYIYEPDAQTVID ELLVRYVESLIYQAVAENMASEQSARMVAMKAATDNAGNVINELKLVYNKTRQAAITK ELSEIVAGAAAV" misc_feature 400900..401763 /locus_tag="Alide2_0383" /note="ATP synthase; Region: ATP-synt; cl00365" /db_xref="CDD:193790" gene 401795..403204 /locus_tag="Alide2_0384" /db_xref="GeneID:10481400" CDS 401795..403204 /locus_tag="Alide2_0384" /inference="protein motif:TFAM:TIGR01039" /note="TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: dia:Dtpsy_0303 F0F1 ATP synthase subunit beta; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="ATP synthase F1 subunit beta" /protein_id="YP_004386327.1" /db_xref="GI:330823024" /db_xref="GO:0017111" /db_xref="InterPro:IPR000194" /db_xref="InterPro:IPR000793" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004100" /db_xref="InterPro:IPR005722" /db_xref="GeneID:10481400" /translation="MAQVQGKIVQCIGAVVDVEFPRDQMPKVYDALKLEGSALTLEVQ QQLGDGIVRTIALGSSDGLKRGLMVTNTGNPITVPVGKATLGRIMDVLGNPIDERGPV SQELTASIHRKAPAYDELSPSQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNM MELINNIAKAHSGLSVFAGVGERTREGNDFYHEMSDSKVVVQEDLSQSKVAMVYGQMN EPPGNRLRVALTGLTIAESFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQ PTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIA ALGIYPAVDPLDSTSRQLDPHVVGEEHYGVARAVQGTLQRYKELRDIIAILGMDELAP EDKLTVARARKIQRFLSQPFHVAEVFTGSPGKYVPLAETIRGFKMIVNGECDHLPEQA FYMVGTIDEAFEKAKKLAN" misc_feature 401801..403198 /locus_tag="Alide2_0384" /note="F0F1 ATP synthase subunit beta; Validated; Region: PRK09280" /db_xref="CDD:181752" misc_feature 401816..402013 /locus_tag="Alide2_0384" /note="ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874" /db_xref="CDD:145823" misc_feature 402017..402856 /locus_tag="Alide2_0384" /note="F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133" /db_xref="CDD:29999" misc_feature order(402086..402088,402137..402139,402143..402148, 402152..402154,402158..402160,402341..402349, 402356..402358,402443..402451,402464..402466, 402554..402556,402563..402565,402575..402577, 402593..402601,402605..402610,402623..402625, 402635..402637,402656..402658,402707..402709, 402716..402721,402731..402733,402752..402754, 402758..402766,402797..402802,402827..402832, 402836..402838,402842..402844) /locus_tag="Alide2_0384" /note="alpha subunit interaction interface [polypeptide binding]; other site" /db_xref="CDD:29999" misc_feature 402245..402265 /locus_tag="Alide2_0384" /note="Walker A motif; other site" /db_xref="CDD:29999" misc_feature order(402251..402253,402260..402268,402338..402343, 402350..402352,402542..402544,402554..402556, 402806..402811) /locus_tag="Alide2_0384" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29999" misc_feature 402530..402544 /locus_tag="Alide2_0384" /note="Walker B motif; other site" /db_xref="CDD:29999" misc_feature order(402800..402802,402806..402808,402824..402829) /locus_tag="Alide2_0384" /note="inhibitor binding site; inhibition site" /db_xref="CDD:29999" misc_feature 402878..403195 /locus_tag="Alide2_0384" /note="ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306" /db_xref="CDD:144044" gene 403279..403695 /locus_tag="Alide2_0385" /db_xref="GeneID:10481401" CDS 403279..403695 /locus_tag="Alide2_0385" /inference="protein motif:TFAM:TIGR01216" /note="KEGG: dia:Dtpsy_0304 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal" /codon_start=1 /transl_table=11 /product="ATP synthase F1 subunit epsilon" /protein_id="YP_004386328.1" /db_xref="GI:330823025" /db_xref="GO:0005524" /db_xref="InterPro:IPR001469" /db_xref="InterPro:IPR020546" /db_xref="InterPro:IPR020547" /db_xref="GeneID:10481401" /translation="MNTIHVDVVSAEESIFAGEARFVALPGEAGELGILPKHTPLITR IKPGSVRIEMADGSEEFVFVAGGILEVQPDCVTVLSDTAIRGKDLDDQKAQEARAAAE EALKNAKSEIDIARAQSELAIMAAQIAALRKYRQKH" misc_feature 403279..403683 /locus_tag="Alide2_0385" /note="F0F1 ATP synthase subunit epsilon; Validated; Region: atpC; PRK00571" /db_xref="CDD:179070" misc_feature 403288..403527 /locus_tag="Alide2_0385" /note="ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Region: ATP-synt_DE_N; cl10033" /db_xref="CDD:195951" gene 403901..404329 /locus_tag="Alide2_0386" /db_xref="GeneID:10481402" CDS 403901..404329 /locus_tag="Alide2_0386" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004386329.1" /db_xref="GI:330823026" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10481402" /translation="MLKDPQTPRYAQRRTHRTYTPQFKAELVAACRQPGASVAAVALQ HGMNANVLHRWLKEWAQGFHRLEAGVSTAVVASPPPAFIPIDLSAVPPASAGELPSAS LPTPADGIRIECQRPGMSVTVHWPLSGAAECAQMLRELLR" misc_feature 403937..404143 /locus_tag="Alide2_0386" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 404326..404658 /locus_tag="Alide2_0387" /db_xref="GeneID:10481403" CDS 404326..404658 /locus_tag="Alide2_0387" /inference="protein motif:PFAM:PF05717" /note="PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like" /codon_start=1 /transl_table=11 /product="IS66 Orf2 family protein" /protein_id="YP_004386330.1" /db_xref="GI:330823027" /db_xref="InterPro:IPR008878" /db_xref="GeneID:10481403" /translation="MIRIDEAWLATTPLDMRAGTDTALARVIATFGAAHPHHAYVFAN QRANRLKVLVHDGVGLWLAARRLHQGKFVWAPAGSPNVALEHAQLNALVLGLPWQRVG SQGAISVV" misc_feature 404332..404631 /locus_tag="Alide2_0387" /note="putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; cl14891" /db_xref="CDD:196852" gene 404741..406255 /locus_tag="Alide2_0388" /db_xref="GeneID:10481404" CDS 404741..406255 /locus_tag="Alide2_0388" /inference="protein motif:PFAM:PF03050" /note="PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66" /codon_start=1 /transl_table=11 /product="transposase IS66" /protein_id="YP_004386331.1" /db_xref="GI:330823028" /db_xref="InterPro:IPR004291" /db_xref="GeneID:10481404" /translation="MVIDEQALSELDAEQLREVTQRLLAELRHQRALNEKLTYECALL KRLKFAAQSERHSADQKSLLEDEIDADLAAVAVEIEQLQPPAAAPEAKQQPKRQPLPA HLPRREIRHEPESTTCACGCRMQRIGEDVAEKLDYVPGVFTVERYIRGKWACTQCETI TQAPVEAHVIDKGIPTAGLLAQVLVAKYQDHQPLYRQENIFGRAGLAIPRSTLAQWVG TCGARLQPLVDALKAEVLGHRVLHGDETPVAMLKPGSGKTHRAYLWAYAPGAFEATRA VVYDFCESRAGEHARAFLGDWRGSLICDDYAGYKASFSQGVTEAGCLAHARRKFFDLH AAGKSQIAELALMQFARVYEIERQVQPLAAPERLQVRQQHSRPILDALHQWMVLQRQQ VAGNSATAKALDYSLKRWAALTRFVDDPQLPPDNNWIENQIRPVALGRSNWLFAGSLR AGQRAAAVMSLIQSARMNGHDPYAYLKDVLTRLPTHKASRIEELLPHRWQPIDI" misc_feature 404843..405067 /locus_tag="Alide2_0388" /note="Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007" /db_xref="CDD:193480" misc_feature 405071..405235 /locus_tag="Alide2_0388" /note="putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; cl14891" /db_xref="CDD:196852" misc_feature 405254..406102 /locus_tag="Alide2_0388" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(406282..406909) /locus_tag="Alide2_0389" /pseudo /db_xref="GeneID:10481405" gene complement(406909..407842) /locus_tag="Alide2_0390" /pseudo /db_xref="GeneID:10481406" gene 408367..409180 /locus_tag="Alide2_0391" /pseudo /db_xref="GeneID:10481407" gene complement(409186..409719) /locus_tag="Alide2_0392" /db_xref="GeneID:10481408" CDS complement(409186..409719) /locus_tag="Alide2_0392" /inference="protein motif:PFAM:PF04536" /note="PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386332.1" /db_xref="GI:330823029" /db_xref="InterPro:IPR007621" /db_xref="GeneID:10481408" /translation="MAKTRTGFLHRLARLLRHRWADGGLHQALPPELLERLGRRVSAS ERRHTGQIRICVEGGLPLSYLWRGASVRERAVTQFGKLRVWDTEHNNGVLIYLLLAEH AIEIVADRGLAHAVPAGTWRDMADHMAQAFREGRYEDGLTLALAEVSALLVEHFPAAP GQPGARSNELPDTPMVG" misc_feature complement(409300..409599) /locus_tag="Alide2_0392" /note="Domain of unknown function (DUF477); Region: DUF477; cl01535" /db_xref="CDD:194159" gene complement(409734..410621) /locus_tag="Alide2_0393" /db_xref="GeneID:10481409" CDS complement(409734..410621) /locus_tag="Alide2_0393" /inference="protein motif:PFAM:PF04536" /note="PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386333.1" /db_xref="GI:330823030" /db_xref="InterPro:IPR007621" /db_xref="GeneID:10481409" /translation="MPLALVLQALIAIFLVAIGAPGATAQPLRTVPALTARVIDQTAT LSEGERQALEAQLAAIEQQHGSQVVVLMVPTTAPEDIAAFANRVGNAWKIGRRDVGDG VLVIVAKDDRRMRIEVAKALEGAIPDIAAARIIDGAMKPRFRENDFAGGLDAAVRQIG ARIAGESLPPPKGEGQRRPDGAGWEDLAIFLFFGVLVAGPVVRALFGQRLGALVMGGG VGVLAFLATASVLLAAGAGIAALFYTWAFAGRGAPIVWNGGGWGGGHGGGWSGGGGGG GFRSGGGGDFGGGGASGDW" sig_peptide complement(410544..410621) /locus_tag="Alide2_0393" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.968 at residue 26" misc_feature complement(<410001..410618) /locus_tag="Alide2_0393" /note="Domain of unknown function (DUF477); Region: DUF477; cl01535" /db_xref="CDD:194159" gene complement(410625..411230) /locus_tag="Alide2_0394" /db_xref="GeneID:10481410" CDS complement(410625..411230) /locus_tag="Alide2_0394" /inference="protein motif:PFAM:PF04011" /note="PFAM: LemA; KEGG: aav:Aave_0381 LemA family protein" /codon_start=1 /transl_table=11 /product="LemA family protein" /protein_id="YP_004386334.1" /db_xref="GI:330823031" /db_xref="InterPro:IPR007156" /db_xref="GeneID:10481410" /translation="MKRLIATIAAALALSGCGYNDFQRLDEQSKAAWSEVLNQYQRRA DLVPNIVATVKGEAAFEQETLTKVIEARAKATSIQVTPELLNNPEAFNKFQQAQGELS SALSRLMVVAERYPQLQANQAFRDLRVTLEGTENRITVARNRYIQTVQEYNVLARSFP TNITAMVFSYAPKPSFTVQNEAQISAPPTVDFSSPAAPASK" sig_peptide complement(411168..411230) /locus_tag="Alide2_0394" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.748) with cleavage site probability 0.496 at residue 21" misc_feature complement(410655..411188) /locus_tag="Alide2_0394" /note="LemA family; Region: LemA; cl00742" /db_xref="CDD:120079" gene 411351..411818 /locus_tag="Alide2_0395" /db_xref="GeneID:10481411" CDS 411351..411818 /locus_tag="Alide2_0395" /inference="similar to AA sequence:KEGG:Dtpsy_0312" /note="KEGG: dia:Dtpsy_0312 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386335.1" /db_xref="GI:330823032" /db_xref="GeneID:10481411" /translation="MHGAWLMTQSSMRAAVLAGTPDELEIIFYDALRAGDLDRVMACW ADEDDIVCIHPGGLRLIGLAAIRSAFAAMLRHGGLGVRTQRVGCVQTLASAVHSVLEH VSVMLPDGPREAVVCATNVYHKTPRGWCLVTHHASPGVVGEGAAPAAAAHVLH" misc_feature 411432..>411578 /locus_tag="Alide2_0395" /note="Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109" /db_xref="CDD:195792" gene 411864..412400 /locus_tag="Alide2_0396" /db_xref="GeneID:10481412" CDS 411864..412400 /locus_tag="Alide2_0396" /inference="protein motif:PFAM:PF11161" /note="PFAM: Protein of unknown function DUF2944; KEGG: ajs:Ajs_0319 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386336.1" /db_xref="GI:330823033" /db_xref="InterPro:IPR021332" /db_xref="GeneID:10481412" /translation="MDDIVRQAIAKWPHVPDCYAWLGLDARGQWYLRDEGTQARGGFR AARGVRLEHAKLIDFIHRNYEADARGCWFFQNGPQRVYVELEAAPLVWRVNAAGEAVA HTGAPAGGVQECLVDEEGRVYLTSPMGLGLVHSLDVDCVAQQIEQGRWQPREVRAADL PAACGFVPSPAALARTGA" misc_feature 411864..412382 /locus_tag="Alide2_0396" /note="Protein of unknown function (DUF2946); Region: DUF2944; pfam11161" /db_xref="CDD:151603" gene complement(412556..413392) /locus_tag="Alide2_0397" /db_xref="GeneID:10481413" CDS complement(412556..413392) /locus_tag="Alide2_0397" /inference="protein motif:PFAM:PF00034" /note="PFAM: Cytochrome c, class I; KEGG: aav:Aave_0385 cytochrome c, class I" /codon_start=1 /transl_table=11 /product="cytochrome c class I" /protein_id="YP_004386337.1" /db_xref="GI:330823034" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10481413" /translation="MSDTHDEAHSGMIKSPKQFLLSAIFAFVLPVFIIIGLVVFVTSG NKPNAGVDNAEMAIAQRLQKVGSVQVRDANRPLRSGEEVFKGQCAACHATGAAGAPKL ADAAAWGPRIKTGFEALVQSALKGKGAMAPQGGGDFNDTEIARGVAYMANAAGAKFAE PAAPAAADAAPAAAPAAAEAPPAAAAAAPAAAAPAGGAGQAAGKAVYESTCVACHGTG VAGAPKFGDKAAWAPRLAAGFDEVLKIATQGKGAMPPKGGSTASAADFKAAVEYLVNS AK" misc_feature complement(412559..>412777) /locus_tag="Alide2_0397" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene complement(413522..414967) /locus_tag="Alide2_0398" /db_xref="GeneID:10481414" CDS complement(413522..414967) /locus_tag="Alide2_0398" /inference="protein motif:TFAM:TIGR01845" /note="KEGG: dia:Dtpsy_0316 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="NodT family RND efflux system outer membrane lipoprotein" /protein_id="YP_004386338.1" /db_xref="GI:330823035" /db_xref="GO:0005215" /db_xref="GO:0008289" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010131" /db_xref="GeneID:10481414" /translation="MHKHTLPRTRPARALSPLVIAALLAGCSFIPKYERPAAPVPEAF ALAGNDVPATARAAADIDWKDYFTDPRLQRLIGIALGNNRDLRVAMLNVEQARAQFQI QRAGQFPTVNAIASGTRQPSIVNGQYANQFQAGLGISAWEIDFFGRIGALKEQALAQF LATEEARKSAQISLVAAVASGWLTLMADEELLDISRRTLETREESVKLTRLRLEHGVS SELDSHQAESLAQAARATYAQQQRQRLLDENALALLLGQPLPDDIRASLPSMRLADAA LMQPLPAGLPSDLLQRRPDIRQAEQLLIGANANIGAARAAFFPRISLTAQFGSVSDEL SGLFKSGSWAFSLAPQLALPIFDAGRNQAGLESARAGREIAVAQYEKSIQTAFREVSD ALAGQATLQQQIDAQRAQTQADAKRLDLSDLRYRNGVASYLDLLDAQRSLYATEQALV QTRLQQLQNQVTLYKVLGGGWTDTGGGPARS" misc_feature complement(413567..414898) /locus_tag="Alide2_0398" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature complement(414284..414754) /locus_tag="Alide2_0398" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(413567..414100) /locus_tag="Alide2_0398" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(414992..418147) /locus_tag="Alide2_0399" /db_xref="GeneID:10481415" CDS complement(414992..418147) /locus_tag="Alide2_0399" /inference="protein motif:TFAM:TIGR00915" /note="KEGG: dia:Dtpsy_0317 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="hydrophobe/amphiphile efflux-1 (HAE1) family transporter" /protein_id="YP_004386339.1" /db_xref="GI:330823036" /db_xref="GO:0005215" /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR004764" /db_xref="GeneID:10481415" /translation="MAKFFIERPIFAWVVAIFIMVAGAVSITQLPIAQYPAVAPPTIQ VSVAYPGATAQTLEDSVLAVIEREMNGATGLAYMEATAQANGTGSIVLSFEPGTNDDL AQVDVQNRLSRATPRLPAAVTQQGVRVEKSRSNFLLFSMLTSETPNVSIDALNDYAAR NIVPELQRLPGVGSVTQFGSERAMRVWIDPAKLKGFNLSLDQVNAAIRAQNVQVSAGN LGDLPSAQGQTTTATIVVQGQLSTTEQFGNIVLRANTDGSTVRLRDVATLELGAQSYS TSARLNGSPAVGMGVQLTPTANALATAKAVKARLAELQQYFPQGVKYTIPYDTSTFIS VSIEKVVHTLLEAVVLVFLVMFLFLQNFRYTIIPTIVVPVALLGTFGALLAMGFSINV LTMFGMVLVIGIVVDDAIVVVENVERIMSEEGLPPLQATRKAMDQISGAIVGVTVVLV SVFVPLAFFAGSTGNIYRQFAATMATSIAFSAFLALSLTPALCGTLLKPVDAGHHMEK KGFFGWFNRAFKSTTHRYESGLARLVRRGGRMAVIYAALIGAVAIVYTRLPTSFLPNE DQGYLITNVQLPAGASLERTRAALTQVENFALKQPEVNNIVTVAGFSFSGQGQNAGLA FVTLKDWSERPGPEHSAAAIAGRAMGALMGYRDAFIFALSPPPIPELGTATGFTFRLQ DRGSKGHAALVAARNQLLGMAAQSKVLAGVRPDGMEDAPQMQIDIDRDKASALGVSFD AIGSALSTALGSTYVNDFPNQGRLQRVVVQADARARMQPEEVLDIPVLNNKGQVVPLS TFATTRWLTGAMQTVRYNGYPSMKIAGDAAPGFSTGDAMAEMERLAAQLPEGFGFEWT GQSREEKLAGSQAMVLYAFSLLAVFLCLAALYESWSIPFSVLLVVPLGVLGVLLATLL RGMSNDVYFQIGLVTIIGLSAKNAILIIEFAKDLQASGKSVIQAALEAAHLRFRPIVM TSLAFTLGVLPLFLASGASSASQRAIGTGVIGGMITGTLLAVIFVPVFFVVVRSFFKG SQRQREHDAKHAMQHHSDSAA" misc_feature complement(415157..418147) /locus_tag="Alide2_0399" /note="The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915" /db_xref="CDD:162104" gene complement(418166..419446) /locus_tag="Alide2_0400" /db_xref="GeneID:10481416" CDS complement(418166..419446) /locus_tag="Alide2_0400" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: dia:Dtpsy_0318 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_004386340.1" /db_xref="GI:330823037" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10481416" /translation="MPRLNNNKNARPVRRFVRRPAAALSIALAAALALAACGKKDAAP AGAGGPPPAPQVGVVTVQPGDIGLVTELPGRLEASRIAEVRARAAGILQKRLFAEGSD VKAGQKLFLIDSAPYEAALAQAQASVAQAEASLAQSRALAERYRPLVAVNAISKQEYD NAVAAQKTAEANVAAAKAAVTTARINLGYATVTAPISGRIGRALVTEGALVGQGTPTE MAVIQQIDPLYINFTQSASEALKLRAAMASGKYKKAGANAANVSVVLEDGSVHKQPGR LLFTDLTVDATSGQVTLRAEVPNPDRSLLPGLYVRVRLEQAQVDNGVLLPQQAVTRTG AADTVMVVGEGGRVSPRPVKLGPAQGTNWVVLDGLKAGEQVMVDGFQKLPRVKPGDPM VVQPVPWQANGAAKAPAQAASAAASQPAATPAKQ" sig_peptide complement(419339..419446) /locus_tag="Alide2_0400" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.537 at residue 36" misc_feature complement(418313..419284) /locus_tag="Alide2_0400" /note="periplasmic multidrug efflux lipoprotein precursor; Reviewed; Region: PRK09578" /db_xref="CDD:169982" gene 419638..420258 /locus_tag="Alide2_0401" /db_xref="GeneID:10481417" CDS 419638..420258 /locus_tag="Alide2_0401" /inference="protein motif:PFAM:PF08361" /note="PFAM: Transcription regulator MAATS, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0319 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="tetracycline transcriptional repressor MAATS-type domain-containing protein" /protein_id="YP_004386341.1" /db_xref="GI:330823038" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="InterPro:IPR013572" /db_xref="GeneID:10481417" /translation="MARRTKEDADATRNALLDAAELVFYEKGVARASLSEIAQAAGAT RGAIYWHFKDKVDLFNAMMDRATLPLEGVCNAGEAAYAKEPLVQLRGMVELLLRSVVS DAHMRRVFEIALYRVEYVSELSGVRERHLAAHARFQALLERNLSLAAAQASLALPMSA AMAAAGLHALFNGLLQSWLLGEASFDLPATGRAAVDAYLRGLGFHV" misc_feature 419638..420249 /locus_tag="Alide2_0401" /note="DNA-binding transcriptional repressor AcrR; Provisional; Region: PRK10668" /db_xref="CDD:182632" misc_feature 419683..419823 /locus_tag="Alide2_0401" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" misc_feature 419890..420243 /locus_tag="Alide2_0401" /note="MAATS-type transcriptional repressor, C-terminal region; Region: TetR_C_2; pfam08361" /db_xref="CDD:116942" gene 420292..420367 /locus_tag="Alide2_R0001" /note="tRNA-Arg1" /db_xref="GeneID:10481418" tRNA 420292..420367 /locus_tag="Alide2_R0001" /product="tRNA-Arg" /db_xref="GeneID:10481418" gene 420516..420601 /locus_tag="Alide2_R0002" /note="tRNA-Tyr1" /db_xref="GeneID:10481419" tRNA 420516..420601 /locus_tag="Alide2_R0002" /product="tRNA-Tyr" /db_xref="GeneID:10481419" gene 420650..420723 /locus_tag="Alide2_R0003" /note="tRNA-Gly1" /db_xref="GeneID:10481420" tRNA 420650..420723 /locus_tag="Alide2_R0003" /product="tRNA-Gly" /db_xref="GeneID:10481420" gene 420764..420838 /locus_tag="Alide2_R0004" /note="tRNA-Thr1" /db_xref="GeneID:10481421" tRNA 420764..420838 /locus_tag="Alide2_R0004" /product="tRNA-Thr" /db_xref="GeneID:10481421" gene 420914..422104 /locus_tag="Alide2_0402" /db_xref="GeneID:10481422" CDS 420914..422104 /locus_tag="Alide2_0402" /inference="protein motif:TFAM:TIGR00485" /note="KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu/EF1A, domain 2" /codon_start=1 /transl_table=11 /product="translation elongation factor Tu" /protein_id="YP_004386342.1" /db_xref="GI:330823039" /db_xref="GO:0003746" /db_xref="GO:0005525" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004160" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004541" /db_xref="InterPro:IPR005225" /db_xref="GeneID:10481422" /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLAKKFGGEA KGYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGA ILVCSAADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLDK YEFPGDDTPIIRGSAKLALEGDQSDKGEPAILKLAEALDTYIPTPERAVDGTFLMPVE DVFSISGRGTVVTGRVERGIIKVGEEIEIVGIRETQKTTVTGVEMFRKLLDQGQAGDN VGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFY FRTTDVTGSIELPADKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVA KIIE" misc_feature 420914..422101 /locus_tag="Alide2_0402" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:178823" misc_feature 420944..421528 /locus_tag="Alide2_0402" /note="EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors; Region: EF_Tu; cd01884" /db_xref="CDD:133284" misc_feature 420968..420991 /locus_tag="Alide2_0402" /note="G1 box; other site" /db_xref="CDD:133284" misc_feature order(420971..420973,420977..420979,420989..420994, 421001..421003,421010..421015,421025..421027, 421109..421114,421166..421171,421238..421243, 421247..421258,421265..421267,421358..421360, 421370..421372,421448..421453) /locus_tag="Alide2_0402" /note="GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133284" misc_feature order(420977..420994,421052..421054,421319..421324, 421328..421330,421433..421441) /locus_tag="Alide2_0402" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133284" misc_feature 421079..421111 /locus_tag="Alide2_0402" /note="Switch I region; other site" /db_xref="CDD:133284" misc_feature 421097..421099 /locus_tag="Alide2_0402" /note="G2 box; other site" /db_xref="CDD:133284" misc_feature 421154..421165 /locus_tag="Alide2_0402" /note="G3 box; other site" /db_xref="CDD:133284" misc_feature 421160..421216 /locus_tag="Alide2_0402" /note="Switch II region; other site" /db_xref="CDD:133284" misc_feature 421319..421330 /locus_tag="Alide2_0402" /note="G4 box; other site" /db_xref="CDD:133284" misc_feature 421433..421441 /locus_tag="Alide2_0402" /note="G5 box; other site" /db_xref="CDD:133284" misc_feature 421550..421810 /locus_tag="Alide2_0402" /note="EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697" /db_xref="CDD:58088" misc_feature 421817..422086 /locus_tag="Alide2_0402" /note="Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts)...; Region: EFTU_III; cd03707" /db_xref="CDD:58073" misc_feature order(421853..421855,421859..421867,421919..421921, 422039..422047,422075..422077) /locus_tag="Alide2_0402" /note="Antibiotic Binding Site [chemical binding]; other site" /db_xref="CDD:58073" gene 422117..422192 /locus_tag="Alide2_R0005" /note="tRNA-Trp1" /db_xref="GeneID:10481423" tRNA 422117..422192 /locus_tag="Alide2_R0005" /product="tRNA-Trp" /db_xref="GeneID:10481423" gene 422281..422664 /locus_tag="Alide2_0403" /db_xref="GeneID:10481424" CDS 422281..422664 /locus_tag="Alide2_0403" /inference="protein motif:TFAM:TIGR00964" /note="KEGG: ajs:Ajs_3903 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein SecE/Sec61-gamma protein" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecE" /protein_id="YP_004386343.1" /db_xref="GI:330823040" /db_xref="GO:0015450" /db_xref="InterPro:IPR001901" /db_xref="InterPro:IPR005807" /db_xref="GeneID:10481424" /translation="MATSQVETVTTGADKAKLFAAVAIVLASVAGFYVLGKQGPLIQW GALVLGLVLAVVMFLTSEHGRQFMGFSRDAWREVKKVVWPTRKETLQMTGYVFAFVVL MALFLWLTDKTLEWVLYDLVLGWRK" misc_feature 422374..422652 /locus_tag="Alide2_0403" /note="SecE/Sec61-gamma subunits of protein translocation complex; Region: SecE; cl00481" /db_xref="CDD:193837" gene 422664..423254 /locus_tag="Alide2_0404" /db_xref="GeneID:10481425" CDS 422664..423254 /locus_tag="Alide2_0404" /inference="protein motif:TFAM:TIGR00922" /note="TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: dia:Dtpsy_3251 NusG antitermination factor; SMART: Transcription antitermination protein, NusG, N-terminal; KOW" /codon_start=1 /transl_table=11 /product="NusG antitermination factor" /protein_id="YP_004386344.1" /db_xref="GI:330823041" /db_xref="GO:0003711" /db_xref="InterPro:IPR001062" /db_xref="InterPro:IPR005824" /db_xref="InterPro:IPR006645" /db_xref="GeneID:10481425" /translation="MVDAVETNGAQPPVDASVNPDLRWYIVHAYSGMEKAVERNIQER IVRSGMQHKFGRILVPTEEVVEMKNGQRKTTERRLFPGYVFVEMVMDDDTWHLVKHTS KVTGFVGGVKNRPAPISEEEVQKIVSQMQQGTDKPRHKIEFMVGELVRVKEGPFTDFN GSVEEVNYEKNRLRVSVMIFGRSTPVELEFGQVEKT" misc_feature 422718..423248 /locus_tag="Alide2_0404" /note="transcription antitermination protein NusG; Validated; Region: nusG; PRK05609" /db_xref="CDD:180161" misc_feature 422730..423053 /locus_tag="Alide2_0404" /note="Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891" /db_xref="CDD:193580" misc_feature order(422739..422741,422841..422843,422901..422903, 422910..422912,422916..422918,423015..423017, 423039..423041) /locus_tag="Alide2_0404" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:193580" gene 423385..423816 /locus_tag="Alide2_0405" /db_xref="GeneID:10481426" CDS 423385..423816 /locus_tag="Alide2_0405" /inference="protein motif:TFAM:TIGR01632" /note="TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, C-terminal domain; KEGG: aav:Aave_4535 50S ribosomal protein L11; SMART: Ribosomal protein L11" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L11" /protein_id="YP_004386345.1" /db_xref="GI:330823042" /db_xref="GO:0003735" /db_xref="InterPro:IPR000911" /db_xref="InterPro:IPR006519" /db_xref="InterPro:IPR020783" /db_xref="InterPro:IPR020784" /db_xref="GeneID:10481426" /translation="MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNA QTQGVEPGLPLPVVITAFADKSFTFIIKTPPATTLIKKAIKLEKGSSNALSTKVGKIT RAQLEEIAKTKLKDMNAASVDAAVRTLAGSARSMGVTVEGL" misc_feature 423385..423810 /locus_tag="Alide2_0405" /note="50S ribosomal protein L11; Validated; Region: rplK; PRK00140" /db_xref="CDD:178895" misc_feature 423409..423804 /locus_tag="Alide2_0405" /note="Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349" /db_xref="CDD:100101" misc_feature order(423412..423414,423472..423474,423607..423615, 423625..423627,423646..423648,423721..423723, 423736..423744,423754..423756,423763..423768, 423775..423780,423784..423792) /locus_tag="Alide2_0405" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:100101" misc_feature order(423412..423414,423556..423558,423562..423573, 423583..423585,423589..423594,423724..423729, 423736..423741) /locus_tag="Alide2_0405" /note="L7/L12 interface [polypeptide binding]; other site" /db_xref="CDD:100101" misc_feature order(423460..423462,423472..423474) /locus_tag="Alide2_0405" /note="putative thiostrepton binding site; other site" /db_xref="CDD:100101" misc_feature order(423664..423666,423673..423675) /locus_tag="Alide2_0405" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:100101" gene 423817..424512 /locus_tag="Alide2_0406" /db_xref="GeneID:10481427" CDS 423817..424512 /locus_tag="Alide2_0406" /inference="protein motif:TFAM:TIGR01169" /note="KEGG: dia:Dtpsy_3249 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L1" /protein_id="YP_004386346.1" /db_xref="GI:330823043" /db_xref="GO:0003723" /db_xref="GO:0003735" /db_xref="InterPro:IPR002143" /db_xref="InterPro:IPR005878" /db_xref="GeneID:10481427" /translation="MAKLTKKQKAQQGKVDSTKLYPFAEAVALVKEAATAKFDESIDV AVQLGVDAKKSDQVVRGAVVLPNGTGKTTRVAVFAQGAKAEEAKAAGADVVGMDDLAA QVKAGDMPFDVVIAAPDAMRVVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQ VQFRVDKAGIVHTTIGRRSFADDKLQGNLAALIEALNKAKPATSKGVYLRKVAVSSTM GVGVRVDTQSIAA" misc_feature 423889..424488 /locus_tag="Alide2_0406" /note="Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that...; Region: Ribosomal_L1; cd00403" /db_xref="CDD:88601" misc_feature order(423922..423930,423937..423939,423943..423945, 423949..423951,423955..423957,424318..424320, 424324..424326,424330..424332,424468..424473, 424477..424479) /locus_tag="Alide2_0406" /note="mRNA/rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88601" gene 424745..425251 /locus_tag="Alide2_0407" /db_xref="GeneID:10481428" CDS 424745..425251 /locus_tag="Alide2_0407" /inference="protein motif:HAMAP:MF_00362" /note="KEGG: aav:Aave_4533 50S ribosomal protein L10; HAMAP: Ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L10" /protein_id="YP_004386347.1" /db_xref="GI:330823044" /db_xref="InterPro:IPR001790" /db_xref="InterPro:IPR022973" /db_xref="GeneID:10481428" /translation="MSLNRSEKEAVINEVTSLAAKAQTLVIAEYRGITVADMTKLRVA ARSQGVSLSVLKNTLARRAVAGSAFDVVADQMTGPLVYGFSEDAVAAAKVVADFAKTN DKLVIRGGAFAGKALDVNGVKQLANIPSKEVLLAQLCGLLKSPISRTAVVLGALATKK GESEAVAA" misc_feature 424754..425221 /locus_tag="Alide2_0407" /note="Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11...; Region: Ribosomal_L10; cd05797" /db_xref="CDD:88597" misc_feature order(424766..424771,424778..424780,424910..424921, 424928..424930) /locus_tag="Alide2_0407" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88597" misc_feature order(425009..425011,425078..425080,425087..425089, 425135..425137,425144..425149,425156..425161, 425165..425182,425186..425194,425201..425206, 425210..425215,425219..425221) /locus_tag="Alide2_0407" /note="Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site" /db_xref="CDD:88597" gene 425306..425686 /locus_tag="Alide2_0408" /db_xref="GeneID:10481429" CDS 425306..425686 /locus_tag="Alide2_0408" /inference="protein motif:TFAM:TIGR00855" /note="KEGG: dia:Dtpsy_3247 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L7/L12" /protein_id="YP_004386348.1" /db_xref="GI:330823045" /db_xref="GO:0003735" /db_xref="InterPro:IPR000206" /db_xref="InterPro:IPR013823" /db_xref="GeneID:10481429" /translation="MAFDKDAFLTALDSMTVMELNDLVKAIEEKFGVSAAAMAAPAAG GAAGGAAAAAEEKTEFNVVLAEAGANKVAVIKAVREITGLGLKEAKDLVDGAPKNVKE GIAKADAEAAVKKLVDAGAKAELK" misc_feature 425315..425680 /locus_tag="Alide2_0408" /note="Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387" /db_xref="CDD:100102" misc_feature order(425321..425323,425330..425332,425342..425344, 425381..425383,425396..425398) /locus_tag="Alide2_0408" /note="peripheral dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(425351..425359,425366..425371,425378..425380, 425387..425389,425432..425434,425441..425446, 425450..425458,425477..425482,425543..425545, 425549..425554,425558..425560,425564..425569, 425609..425614,425618..425620,425627..425629) /locus_tag="Alide2_0408" /note="core dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(425363..425365,425372..425377,425387..425389, 425396..425398) /locus_tag="Alide2_0408" /note="L10 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(425516..425521,425528..425533,425540..425542, 425561..425566,425573..425575) /locus_tag="Alide2_0408" /note="L11 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(425519..425521,425531..425533,425540..425542, 425561..425566,425573..425575) /locus_tag="Alide2_0408" /note="putative EF-Tu interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(425519..425521,425528..425533,425540..425542) /locus_tag="Alide2_0408" /note="putative EF-G interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" gene 425961..430085 /locus_tag="Alide2_0409" /db_xref="GeneID:10481430" CDS 425961..430085 /locus_tag="Alide2_0409" /inference="protein motif:TFAM:TIGR02013" /note="KEGG: aav:Aave_4531 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 7; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit beta" /protein_id="YP_004386349.1" /db_xref="GI:330823046" /db_xref="GO:0003677" /db_xref="GO:0003899" /db_xref="InterPro:IPR007120" /db_xref="InterPro:IPR007641" /db_xref="InterPro:IPR007642" /db_xref="InterPro:IPR007644" /db_xref="InterPro:IPR007645" /db_xref="InterPro:IPR010243" /db_xref="InterPro:IPR019462" /db_xref="GeneID:10481430" /translation="MAQTSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQRDAYTAFLQ AETPPQKRTSEGLQAAFNAAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFAS AVRAKVQLIIYDRESSTAQSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQL HRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVT ILLKAIGLNPESILANFFVNDNFRLMDSGAQMEFVPERLRGEVARFDITDKSGKVVVA KDKRVTARHTRELEQSGTTHISVPEDFLLGRVVARNIVDPDTGEILAKANEELTEALL KKLRSAGVQELQAIYTNELDQGAYISQTLRIDETADEFAARVAIYRMMRPGEPPTEDA VQALFQRLFYNPDTYDLSRVGRMKFNAKVGRSEATGPMVLDNDDILSVVKILVDLRNG KGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEKAVKERLGQAEQEPLMPHDLINSK PISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSALGPGGLTRERAGFEVRDVHVTH YGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRVVDGKVTSEIDYLSAIEEG KYIIAQANAALDEEGRLTGDLVSAREQGESTLVSAERVQYMDVSPAQIVSVAASLVPF LEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAAVDSGTVVTARRGGVVDYVD ATRIVVRVHDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKKGDVLAKGDVIADG ASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELVVMARDTK LGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKLL RAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQIIDDELKRFRLDL NDQLRIVEADAFDRIEKLLVGKKANGGPHKLAKGATIDKEYLAGVEKFHWFDIRPADE AVAAQLESMKNAMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPG DKMAGRHGNKGVVSKITPVEDMPHMADGTPVDIVLNPLGVPSRMNIGQVLEVHLGWAG KGLGQRIGDMLRDQANVAEMRKFLGEVYNSRGRKEDLSQLSDDEVMSMAANLTGGVPY ASPVFDGASEAEIKDMLKLAYPDDIKERKGLTDTRTQAWLIDGRTGERFERPTTIGYM HYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQ EMLTVKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS" misc_feature 426051..>426602 /locus_tag="Alide2_0409" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl04593" /db_xref="CDD:156170" misc_feature <426819..>426992 /locus_tag="Alide2_0409" /note="DNA-directed RNA polymerase subunit beta'; Provisional; Region: PRK00566" /db_xref="CDD:179068" misc_feature <427068..427358 /locus_tag="Alide2_0409" /note="RNA polymerase beta subunit; Region: RNA_pol_Rpb2_1; cl04591" /db_xref="CDD:194918" misc_feature <427263..>428129 /locus_tag="Alide2_0409" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653" /db_xref="CDD:73223" misc_feature <428295..>428828 /locus_tag="Alide2_0409" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl04593" /db_xref="CDD:156170" misc_feature order(428424..428426,428466..428468) /locus_tag="Alide2_0409" /note="RPB11 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(428481..428483,428592..428594,428598..428600, 428610..428618,428622..428624) /locus_tag="Alide2_0409" /note="RPB12 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature <429156..430076 /locus_tag="Alide2_0409" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653" /db_xref="CDD:73223" misc_feature order(429198..429200,429204..429206,429279..429287, 429294..429296,429300..429305,429699..429722, 429726..429728) /locus_tag="Alide2_0409" /note="RPB3 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(429252..429254,429258..429260,429264..429266, 429330..429332,429336..429338,429345..429347, 429354..429356,429369..429371,429381..429383, 429585..429587,429696..429698,429720..429728, 429732..429734,429771..429773,429780..429788, 429792..429797,429858..429866,429876..429878, 429882..429887,429891..429893,429897..429914, 429918..429935,429945..429947,430014..430016, 430026..430028,430032..430034,430038..430043, 430047..430049,430053..430064,430068..430070, 430074..430076) /locus_tag="Alide2_0409" /note="RPB1 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(429276..429278,429702..429704) /locus_tag="Alide2_0409" /note="RPB11 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature order(429279..429281,429318..429320,429399..429404, 429408..429410,429651..429653,429735..429737) /locus_tag="Alide2_0409" /note="RPB10 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" gene 430106..434335 /locus_tag="Alide2_0410" /db_xref="GeneID:10481431" CDS 430106..434335 /locus_tag="Alide2_0410" /inference="protein motif:TFAM:TIGR02386" /note="TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 4; KEGG: dia:Dtpsy_3245 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase, N-terminal" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit beta'" /protein_id="YP_004386350.1" /db_xref="GI:330823047" /db_xref="GO:0003677" /db_xref="GO:0003899" /db_xref="InterPro:IPR000722" /db_xref="InterPro:IPR006592" /db_xref="InterPro:IPR007066" /db_xref="InterPro:IPR007080" /db_xref="InterPro:IPR007081" /db_xref="InterPro:IPR007083" /db_xref="InterPro:IPR012754" /db_xref="GeneID:10481431" /translation="MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETI NYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM GHIDLAAPCAHIWFLKSLPSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIM SEDDYDAKRKEYGDEFVAKMGAEGIKELLEGIDIEIEIEKLRGDLTGSEVKVKKNAKR LKVLEAFKKSGIKPEWMVLEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSR LRRLLELKAPEIIARNEKRMLQEAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSG RFRQNLLGKRVDYSGRSVITVGPTLKLHQCGLPKLMALELFKPFIFSRLEAMGIATTI KAAKKEVEAGTPVVWDILEEVIKEHPVMLNRAPTLHRLGIQAFEPILIEGKAIQLHPL VCAAFNADFDGDQMAVHVPLSVEAQLEARTLMLASNNVLFPASGEPSIVPSQDVVLGL YHATREKINGKGEGMVFTDIAEVQRALDAGEVELATRISVRLTEWNRNKATGEFEPET KLVETTVGRALLSEILPKGLAFSNLNKALKKKEISRLINASFRKCGLKETVVFADKLL QNGFRLATRAGISICVDDMLVPPQKAEIIGRAEREVKEIEQQYVSGLVTAGERYNKVV DIWGKAGDEVSKVMMQQLAKQKTTDRHGKEVDQESFNSIYMMADSGARGSAAQIRQLA GMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR LVDVTQDLVVTEEDCGTSNGSLMRAIVEGGEVIESLRERILGRVAAEDVLHPETRAVL VPAGRMLDEDLIEEIEAAGVDEVKVRTALTCETRYGLCAKCYGRDLGRGGLINLGEAV GVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGVIGFNATMRYVTNTKGE LVVIARSGEVIIQDEHGRERERHKVPYGATLTVKADQQIKAGTILANWDPLTRPIITE FAGTAKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPLVKLIDGHGQEVK IPGTDHSVTIGFQVGALIQVRDGQEVGPGEVLARIPVEGQKTRDITGGLPRVAELFEA RSPKDKGMLAEITGTVSFGKETKGKVRLQITDPDGKVWDELVPKEKNVLVHEGQVVNK GELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRV VVENPGESSYIAGEQVERSEILNTNEQLQSEGKIPATYTNVLLGITKASLSTDSFISA ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKVKDAMDEAER RAIAEAEAAELASAGAEGAAAEIDGSADAAD" misc_feature 430145..432661 /locus_tag="Alide2_0410" /note="DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; Region: RpoC; COG0086" /db_xref="CDD:30435" misc_feature 430154..431125 /locus_tag="Alide2_0410" /note="RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997" /db_xref="CDD:147265" misc_feature 430802..431632 /locus_tag="Alide2_0410" /note="RNA polymerase Rpb1, domain 2; Region: RNA_pol_Rpb1_2; cl11591" /db_xref="CDD:196263" misc_feature 431564..432034 /locus_tag="Alide2_0410" /note="RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983" /db_xref="CDD:147253" misc_feature 432119..432394 /locus_tag="Alide2_0410" /note="RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000" /db_xref="CDD:147268" misc_feature 432698..>432919 /locus_tag="Alide2_0410" /note="DNA-directed RNA polymerase subunit A''; Validated; Region: PRK04309" /db_xref="CDD:179818" misc_feature 432824..>432919 /locus_tag="Alide2_0410" /note="Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429" /db_xref="CDD:142634" misc_feature 432839..432841 /locus_tag="Alide2_0410" /note="Rpb1 - Rpb6 interaction site [polypeptide binding]; other site" /db_xref="CDD:132719" misc_feature <432995..434188 /locus_tag="Alide2_0410" /note="bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed; Region: PRK09603" /db_xref="CDD:181983" misc_feature <433745..434188 /locus_tag="Alide2_0410" /note="Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655" /db_xref="CDD:132721" misc_feature order(434030..434032,434075..434080) /locus_tag="Alide2_0410" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:132721" misc_feature order(434120..434122,434138..434140,434156..434158, 434165..434170,434180..434182) /locus_tag="Alide2_0410" /note="Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site" /db_xref="CDD:132721" gene 434455..435021 /locus_tag="Alide2_0411" /db_xref="GeneID:10481432" CDS 434455..435021 /locus_tag="Alide2_0411" /inference="protein motif:PFAM:PF04011" /note="PFAM: LemA; KEGG: dia:Dtpsy_3244 hypothetical protein" /codon_start=1 /transl_table=11 /product="LemA family protein" /protein_id="YP_004386351.1" /db_xref="GI:330823048" /db_xref="InterPro:IPR007156" /db_xref="GeneID:10481432" /translation="MWTTWILLALLLFWAVGAYNRLIRLRSAAMQAFGALDAHMLRWM ALLGEYEASRAAPADSEGAQGAARSAEQDDAHAALWAAATQLSASLAVARARPLDADA AAALSAAAQVLDTAWQTVVREAAQTSEGVAPPALAPWVQRREQVALQSDAARRQFNDA VLLYNHAVAQFPASLLAWLFGLKKGRTL" misc_feature <434908..435006 /locus_tag="Alide2_0411" /note="LemA family; Region: LemA; cl00742" /db_xref="CDD:120079" gene 435018..436385 /locus_tag="Alide2_0412" /db_xref="GeneID:10481433" CDS 435018..436385 /locus_tag="Alide2_0412" /inference="protein motif:TFAM:TIGR00563" /note="KEGG: dia:Dtpsy_3243 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p" /codon_start=1 /transl_table=11 /product="sun protein" /protein_id="YP_004386352.1" /db_xref="GI:330823049" /db_xref="GO:0008649" /db_xref="InterPro:IPR001678" /db_xref="InterPro:IPR004573" /db_xref="GeneID:10481433" /translation="MSAHPHPSPGAASAALSRLLDATASALQAIRAGQSGTAALAATD AALRPAVQALLFQVLRNLGRAQALRRLLAPRKPPPRVDALLCTALALAWEPESAPYEP FTLVNQAVEAAKRSPARHGSAAFINACLRRFLREREGLVAATQGDETAVWNHPAWWIQ RLRRDHPQCWQQILQANNAPAPMVLRVARQKSTSALYQKALAAINIESTAVGGWGVVL ARPVPVQRLPGFDEGVVSVQDAAAQMAAPLLLDGLDAGKSLRLLDACAAPGGKTAHLL EWAAALQAPWQVTALEVDVVRAERIHDNLRRLGLSAQVLVADAGRPEAWWQQASGGEP FDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLAALQARLLAALWPLLKPGGRMLYC TCSVFRAEGDAQIQAFLAHNTDARLLPSAGHLFPGSPDKHGALRDNGPGEHDGFFYAL LQKAA" misc_feature 435099..436379 /locus_tag="Alide2_0412" /note="16S rRNA methyltransferase B; Provisional; Region: PRK10901" /db_xref="CDD:182822" misc_feature 435651..436376 /locus_tag="Alide2_0412" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 436429..437010 /locus_tag="Alide2_0413" /db_xref="GeneID:10481434" CDS 436429..437010 /locus_tag="Alide2_0413" /inference="similar to AA sequence:KEGG:Ajs_3893" /note="KEGG: ajs:Ajs_3893 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386353.1" /db_xref="GI:330823050" /db_xref="GeneID:10481434" /translation="MFACLLALWALPSAVRAQHHGEVADLQLERTAEGLLLSAALQLE LPEVVEDALYKGISMHFIAEAEVVRQRWYWSDKTVARATRFLRLNYQPLTRRWRLTQS PVPFAANGLGVSLGQNFEELPDALSAMQRIARWKIADEAQIDEGVPYVVNFQFRLDMS QLPRPLQIGAVGRSGWDIVLARSVRLPAAEAAR" gene 437007..439295 /locus_tag="Alide2_0414" /db_xref="GeneID:10481435" CDS 437007..439295 /locus_tag="Alide2_0414" /inference="protein motif:PFAM:PF02518" /note="KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; HAMP linker domain" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_004386354.1" /db_xref="GI:330823051" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR013656" /db_xref="GeneID:10481435" /translation="MSDKGIRPAASARKAASRARAMRWALGLGAGVMSAIGLVLLFLL TQATNNRALYERNFAWLLGVNVLVALVLLAVLVWGAVRLAVRLKRGRFGSHLLIKLAG IFGLVGVIPGLLIYVVSYQFVSRSIESWFDVKVEGALSAGVSLARVTLDTIASDLATK TRSASTQLAQVPDAAAGLVLERMRDQLGATDLVLWNAAGQPVAGVGKSRYSLNPERPS VQQFRMARQERISFQIEGLDDISDPMAAENARVRTLVLVANPGVGLLAEPRYVQATLP LPQALVANAIAVQEANREYQERALARVGLRRMYIGTLTLSLFLAVFGAVLLAVVLGNQ LARPLLVLADGVREVAAGNLGPKAALQGKDELGGLTRSFALMTQQLADARSAVEQSMG ELDAARGNLQTILDNLTAGVIVLDRQGVIRSSNPGATRILRAPLAAYEGKPLVEVPGL ADFAATVQRHFDTFALERDHHGLDHWQHPFELHASGGGLAAQGTSLVVRGAELPNDER LLVFDDISEIVSAQRAQAWGEVARRLAHEIKNPLTPIQLSAERLERKLAGKLPDAEQA VLTKSVKTIVDQVDAMKRLVNEFRDYARLPAAELHPLDLNALITDVLHLYDPETAQVP VRAELDERCPLIRGDAQQLRQVVHNLLQNAQDATQQAAEQQGSAPAAVRIGTRWNDAA QRVRLTISDCGPGFPPHILQRAFEPYVTTKPRGTGLGLAVVKKIADEHGARIDLVNRV EGDVVVGAQVSLSFAPETAVAL" misc_feature 437268..439280 /locus_tag="Alide2_0414" /note="Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]; Region: NtrY; COG5000" /db_xref="CDD:34605" misc_feature 438009..438152 /locus_tag="Alide2_0414" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cd06225" /db_xref="CDD:100122" misc_feature order(438009..438014,438021..438026,438030..438035, 438042..438047,438051..438053,438099..438104, 438108..438113,438120..438125,438129..438134, 438141..438146) /locus_tag="Alide2_0414" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100122" misc_feature 438204..438401 /locus_tag="Alide2_0414" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 438579..438788 /locus_tag="Alide2_0414" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(438594..438596,438606..438608,438618..438620, 438627..438629,438639..438641,438648..438650, 438717..438719,438729..438731,438738..438740, 438750..438752,438759..438761,438771..438773) /locus_tag="Alide2_0414" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 438612..438614 /locus_tag="Alide2_0414" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 438933..439268 /locus_tag="Alide2_0414" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(438951..438953,438963..438965,438972..438974, 439071..439073,439077..439079,439083..439085, 439089..439094,439155..439166,439212..439214, 439218..439220,439245..439250,439254..439256) /locus_tag="Alide2_0414" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 438963..438965 /locus_tag="Alide2_0414" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(439083..439085,439089..439091,439155..439157, 439161..439163) /locus_tag="Alide2_0414" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 439335..440030 /locus_tag="Alide2_0415" /db_xref="GeneID:10481436" CDS 439335..440030 /locus_tag="Alide2_0415" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_3240 two component transcriptional regulator, fis family; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain" /codon_start=1 /transl_table=11 /product="two component Fis family transcriptional regulator" /protein_id="YP_004386355.1" /db_xref="GI:330823052" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002197" /db_xref="GeneID:10481436" /translation="MANILVVDDELGIRDLLSEILNDEGHSVDLAENATQARSARLSA NYDLVLLDIWMPDTDGVSLLKEWAMAGALTMPVIMMSGHATIDTAVEATRIGAFSFLE KPITMQKLLKAVEQGLARSTAGQPQAAPAPANAAAVPPSGMVLGGNGAQPAAHVTPAA ESLPLSHQGFNLDRPLREARDGFEKAYFEFHLAREGGSMTRVAEKTGLERTHLYRKLR QLGVDLGRNKRSG" misc_feature 439344..439679 /locus_tag="Alide2_0415" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 439347..439688 /locus_tag="Alide2_0415" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(439356..439361,439488..439490,439512..439514, 439575..439577,439632..439634,439641..439646) /locus_tag="Alide2_0415" /note="active site" /db_xref="CDD:29071" misc_feature 439488..439490 /locus_tag="Alide2_0415" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(439497..439502,439506..439514) /locus_tag="Alide2_0415" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 439641..439649 /locus_tag="Alide2_0415" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature <439803..440024 /locus_tag="Alide2_0415" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" gene 440092..440167 /locus_tag="Alide2_R0006" /note="tRNA-Phe1" /db_xref="GeneID:10481437" tRNA 440092..440167 /locus_tag="Alide2_R0006" /product="tRNA-Phe" /db_xref="GeneID:10481437" gene complement(440383..440643) /locus_tag="Alide2_0416" /db_xref="GeneID:10481438" CDS complement(440383..440643) /locus_tag="Alide2_0416" /inference="protein motif:TFAM:TIGR01563" /note="TIGRFAM: Phage head-tail joining protein; KEGG: aav:Aave_1622 phage head-tail adaptor, putative" /codon_start=1 /transl_table=11 /product="phage head-tail adaptor" /protein_id="YP_004386356.1" /db_xref="GI:330823053" /db_xref="InterPro:IPR008767" /db_xref="GeneID:10481438" /translation="MGAGHLPEAWADHATLWANVRHLSGSESIRSDAEASIVRASIRV RFRTDLNAGMRVLVGAKGYDVTAVLPDLVGRQHVDLVAQLVE" misc_feature complement(440398..440640) /locus_tag="Alide2_0416" /note="Phage head-tail joining protein; Region: Phage_H_T_join; cl11461" /db_xref="CDD:196243" gene complement(440683..441516) /locus_tag="Alide2_0417" /db_xref="GeneID:10481439" CDS complement(440683..441516) /locus_tag="Alide2_0417" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004386357.1" /db_xref="GI:330823054" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10481439" /translation="MIEQHHLSERHACRLVGLSRDSYRHPPQPSELNATLGEQIRQTA LVRRRFGYRRIHDMLRQQFPGVNHKRIYRLYRQANLTVKKRRKVKRPAQERVSLQLAR NINEVLSMDFVSDSLSSGRRIKYLTVVDDFSKESVDITVDYGISGQYVTRVLDQVARF RGYPATVRTDNGPEFTSRAFLAWTHKNGIRHILIEPGKPMQNGYIESFNGKFRDECLN EQWFESLSQARECIAHWRRDYNEVRPHSSLGRIPPARFAQQHRQRAGGAAGSEQKQNF D" misc_feature complement(440758..441468) /locus_tag="Alide2_0417" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(440869..441216) /locus_tag="Alide2_0417" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(441549..441815) /locus_tag="Alide2_0418" /db_xref="GeneID:10481440" CDS complement(441549..441815) /locus_tag="Alide2_0418" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004386358.1" /db_xref="GI:330823055" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10481440" /translation="MKKSRFGDEQIIGFLRQAEAGMGIPELCRSGGFSQATFYKWRAK FGGMQVSEAQRLRELESENAKLKKLLAEAHLDIHALKSVFGVKR" misc_feature complement(<441648..441812) /locus_tag="Alide2_0418" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene complement(441958..442233) /locus_tag="Alide2_0419" /db_xref="GeneID:10481441" CDS complement(441958..442233) /locus_tag="Alide2_0419" /inference="protein motif:TFAM:TIGR01560" /note="TIGRFAM: Bacteriophage HK022, Gp6; KEGG: bcm:Bcenmc03_1290 phage protein DNA packaging protein" /codon_start=1 /transl_table=11 /product="phage DNA packaging-like protein" /protein_id="YP_004386359.1" /db_xref="GI:330823056" /db_xref="InterPro:IPR006450" /db_xref="GeneID:10481441" /translation="MLTLTEVKLHCRIDHSEEDALLQSMIDAATASVGDYINSPTPLD ATAPAPVKAAALLLVGTLYTHREELIERPLSKNPTFERLLAPYRVYA" misc_feature complement(441970..442227) /locus_tag="Alide2_0419" /note="Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; Region: gp6; cd08054" /db_xref="CDD:153446" misc_feature complement(order(441973..441978,441985..441990, 441994..442005,442006..442008,442036..442044, 442048..442056,442060..442068,442075..442077, 442084..442092,442129..442131,442138..442143, 442150..442155,442159..442164,442171..442176, 442198..442200,442204..442209,442216..442218)) /locus_tag="Alide2_0419" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153446" gene complement(442399..443529) /locus_tag="Alide2_0420" /pseudo /db_xref="GeneID:10481442" gene complement(443529..443822) /locus_tag="Alide2_0421" /pseudo /db_xref="GeneID:10481443" gene complement(444078..444341) /locus_tag="Alide2_0422" /db_xref="GeneID:10481444" CDS complement(444078..444341) /locus_tag="Alide2_0422" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386360.1" /db_xref="GI:330823057" /db_xref="GeneID:10481444" /translation="MTEQYNVVAALLQAVEGAGVPAAARPVSVESDPHDDLPDRAMTI IEFDTGDLVGLTHPAVLTEGERWALLALLHCRAAVSVTVYDLA" gene complement(444338..444511) /locus_tag="Alide2_0423" /db_xref="GeneID:10481445" CDS complement(444338..444511) /locus_tag="Alide2_0423" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386361.1" /db_xref="GI:330823058" /db_xref="GeneID:10481445" /translation="MTDSYAKALTERIAKSMLAVPKSADVLAPEVLGAAVGELINEIA ELRARIEALEGKQ" gene complement(444508..444693) /locus_tag="Alide2_0424" /db_xref="GeneID:10481446" CDS complement(444508..444693) /locus_tag="Alide2_0424" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386362.1" /db_xref="GI:330823059" /db_xref="GeneID:10481446" /translation="MSDHNALIGIPRFIELEINKHTAPLLARIAELEKRVNELESAPQ PERHKTGLLRFLTGGGA" gene complement(444693..445772) /locus_tag="Alide2_0425" /db_xref="GeneID:10481447" CDS complement(444693..445772) /locus_tag="Alide2_0425" /inference="similar to AA sequence:KEGG:Bpro_0958" /note="KEGG: pol:Bpro_0958 putative major phage head protein/prohead proteinase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386363.1" /db_xref="GI:330823060" /db_xref="GeneID:10481447" /translation="MDDISRNALARARGALDVVAAGPGQSAGRSVGRLIRSLAMSDDM DAAAAFIEAQNWVEKDAIGRVMKAAVPGLHLGSLPADTITADFMAALRPYAVLSRLDK ARRVPTKTRVIAFGAGAAAFRVGERKPIPISRASLVGIQIDSKPKVAGVSLATRELLA VPGIETDIALGLDLAAATGAAEDAVFLDPTVTGSILNGAPTAVSVGVNTTGVDADLQK AIELLLAAGGDLRDAAWVLSPAAAAKVAGLRGTGGAASFPGIGPNGGELLGLPALTSA TAAGKLILIDQSGIIVDRDAGAEITRAESATLQLSDAPTEPPTAPEQLVSLFQTDAVA IKAVLHRGWAVRAGSVATYITGGTW" gene complement(445865..446272) /locus_tag="Alide2_0426" /db_xref="GeneID:10481448" CDS complement(445865..446272) /locus_tag="Alide2_0426" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386364.1" /db_xref="GI:330823061" /db_xref="GeneID:10481448" /translation="MLPIDAAARELEISVPTLKRWRRLGCPCVPGRRGRGHAALYDVA AIRAWRAAHGREALALELGTVLPGVLADAVFDAWRELEGPTKREKAGPMALALYACAT AALDHLRAENASVPQFRAPFPEHFEYLRKIAAG" gene complement(446259..446603) /locus_tag="Alide2_0427" /db_xref="GeneID:10481449" CDS complement(446259..446603) /locus_tag="Alide2_0427" /inference="similar to AA sequence:KEGG:Bpro_2970" /note="KEGG: pol:Bpro_2970 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386365.1" /db_xref="GI:330823062" /db_xref="GeneID:10481449" /translation="MTAEAILADLLACGITPALTPDGAGIVVPAGRLTGEQRAAVRDH KPELIERIREAARLTEALLAATMRACDAHGDGEQAREQMRQDVLATPPHLRADLLDHF KQTYGGAADAAD" gene complement(446600..447796) /locus_tag="Alide2_0428" /db_xref="GeneID:10481450" CDS complement(446600..447796) /locus_tag="Alide2_0428" /inference="similar to AA sequence:KEGG:Bpro_2969" /note="KEGG: pol:Bpro_2969 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386366.1" /db_xref="GI:330823063" /db_xref="GeneID:10481450" /translation="MKRDDYETMASKFDPVLPPLDDAPHFMADSVVLTCGADLTPQPV RWLWQHWLARGKLHILAGAPGQGKTTLALAMAATATIGGRWPDGSRCEQGNILIWSGE DDAADTLLPRLLASGAKKERCFFIDGARRDGEVVPFDPARDLVQLHAAIERIGGIQLL IVDPVVSAVTGDSHKNTEVRRALQPLVDLASACGCAVLGITHFSKGGQGTDPTQRVVG SVAFSAVARIVMVAAKVKGEEDGKDARVLARSKSNIGPDDGGFEYHLMQSEPIPGIQA SRVAWGKAVEGSARELLTDPDEADGDGGTSARDAAQEFLTQLLSDGPTPTKTVQAEAK EAGISWATVRRASDALGVKKRKSEGGWYWSIPNLLIQVAQLAQPSNDEQVEQVDEQLA QNTEVL" misc_feature complement(446981..447634) /locus_tag="Alide2_0428" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(447590..447598,447608..447613)) /locus_tag="Alide2_0428" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature complement(order(447305..447310,447494..447499, 447503..447505,447590..447598,447608..447610)) /locus_tag="Alide2_0428" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature complement(447308..447322) /locus_tag="Alide2_0428" /note="Walker B motif; other site" /db_xref="CDD:29986" gene complement(447793..448257) /locus_tag="Alide2_0429" /db_xref="GeneID:10481451" CDS complement(447793..448257) /locus_tag="Alide2_0429" /inference="similar to AA sequence:KEGG:Bpro_2968" /note="KEGG: pol:Bpro_2968 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386367.1" /db_xref="GI:330823064" /db_xref="InterPro:IPR002694" /db_xref="GeneID:10481451" /translation="MSFDKTRLPEPVSYYESQGLAFKERKGKWRTTACNFHGSTDSLR INTDSGSFVCMTGCGARGGDVLAYHQAAHGLGFIDAAKELGAWVDDGKDVGRTRPTPL PARDALVVLAAEANLVAVAAANVAHGVVLTQIDLSRLLTASGRISRIMEVFA" misc_feature complement(448006..>448188) /locus_tag="Alide2_0429" /note="CHC2 zinc finger; Region: zf-CHC2; cl02597" /db_xref="CDD:141551" gene complement(448268..448468) /locus_tag="Alide2_0430" /db_xref="GeneID:10481452" CDS complement(448268..448468) /locus_tag="Alide2_0430" /inference="protein motif:PFAM:PF05930" /note="KEGG: drt:Dret_1611 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory" /codon_start=1 /transl_table=11 /product="Prophage CP4-57 regulatory protein" /protein_id="YP_004386368.1" /db_xref="GI:330823065" /db_xref="InterPro:IPR010260" /db_xref="GeneID:10481452" /translation="MTTASPTSSETLLRLPGVLQRVPVSRATWWAGVKTGRFPQPVKL GPRTTCWRSADIDKLISDLAAK" misc_feature complement(448298..448435) /locus_tag="Alide2_0430" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene complement(448949..449143) /locus_tag="Alide2_0431" /db_xref="GeneID:10481453" CDS complement(448949..449143) /locus_tag="Alide2_0431" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386369.1" /db_xref="GI:330823066" /db_xref="GeneID:10481453" /translation="MCSSDRTCLSSRWPNPFASPRLILDEDMQDTAFDQNHMRYDHND RRGNYINVYDRHIFANHLQG" gene complement(449100..449366) /locus_tag="Alide2_0432" /db_xref="GeneID:10481454" CDS complement(449100..449366) /locus_tag="Alide2_0432" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386370.1" /db_xref="GI:330823067" /db_xref="GeneID:10481454" /translation="MATGTVNHIDREMAVSEAAALGDLVDWVTKAKDLIDEILMCAQP SSKLHELLKLHNIAYGNANWLETEAAQGLAYVLQRQNMLIKSLA" gene complement(449467..450690) /locus_tag="Alide2_0433" /db_xref="GeneID:10481455" CDS complement(449467..450690) /locus_tag="Alide2_0433" /inference="protein motif:PFAM:PF00589" /note="PFAM: Integrase, catalytic core, phage; KEGG: dia:Dtpsy_3164 integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004386371.1" /db_xref="GI:330823068" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10481455" /translation="MPLTELRLKALKSKPEPGKHGDRDGLYVRVDAKGAMRWQWRIRT PRGENIVSYGVYPEVSLAEARQRHSEARRQVRDGVNPNEAKRAKKEEVAAKTINSFEA VTREWFAHRKDEWAPSYGEKIMRRMEVDVFPYVGGKSISEITPPELLEVLRRIEKRGA IETAHRALENCGQVFRYGVATGRIPSDPSRDLKGALRKPMVKHMAAITDPADLAALLR AIDGYAGTHVVRCALKLAPMLMLRPGELRMARWEEFDLDAATWTIPPERMKRQRAGKM NGDPHMVPLPRQAVEVLRDLHPLTGPTGLVFRGERDHERPMSENTVNASLRRMGYDTQ TQVTGHGFRATARTILDEHMGYDRAVIEAQLAHSVADSLGRAYNRTEFLKQRREMLQA WADYLEGLRASGMAR" misc_feature complement(449500..450687) /locus_tag="Alide2_0433" /note="integrase; Provisional; Region: PRK09692" /db_xref="CDD:170049" misc_feature complement(449506..450612) /locus_tag="Alide2_0433" /note="Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801" /db_xref="CDD:29502" misc_feature complement(order(449560..449562,449590..449592, 449662..449664,449671..449673,449884..449886, 449965..449967)) /locus_tag="Alide2_0433" /note="active site" /db_xref="CDD:29502" misc_feature complement(order(449560..449562,449590..449592, 449662..449664,449671..449673,449884..449886, 449965..449967)) /locus_tag="Alide2_0433" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29502" gene complement(451055..451677) /locus_tag="Alide2_0434" /pseudo /db_xref="GeneID:10481456" gene 451674..451919 /locus_tag="Alide2_0435" /pseudo /db_xref="GeneID:10481457" gene 452646..453776 /locus_tag="Alide2_0437" /db_xref="GeneID:10481458" CDS 452646..453776 /locus_tag="Alide2_0437" /inference="similar to AA sequence:KEGG:Bpro_2745" /note="KEGG: pol:Bpro_2745 putative transposase" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="YP_004386372.1" /db_xref="GI:330823069" /db_xref="GeneID:10481458" /translation="MRRGRRAQVVKLSKKEREALEALVRQSTAAQRDVVRAKIALMAD EGLTTAAIAASLGLSLPSVSKWRSRVASQGMAGLREVQRPGRPRRIADAQRLQLLALA CEPAEGLGRATPTLNELCERAVQRGVVPHISRSHLQRILQAGDVRPHRVRQWLHSPDP QFREKVNAICELYRQQPLGSVVLSIDEKTGIQAIERKHADRAPQPGRARRREFEYIRH GTQALTAALDVHSGRVLGRCTDRRTQDDLVAFMEEVACAYPQGTVHVIWDNLNTHRAQ AVWADFNSRHGERFVFHFTPLHASWVNQIELLFGIYSRRVLRHASHTSTQHLRQRTEA FIAQRNVSPKPFKWTFAGFELQTGEPRRFTRHAHTPRPSKRR" misc_feature 453300..453593 /locus_tag="Alide2_0437" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 453742..454035 /locus_tag="Alide2_0438" /db_xref="GeneID:10481459" CDS 453742..454035 /locus_tag="Alide2_0438" /inference="similar to AA sequence:KEGG:Bpro_2744" /note="KEGG: pol:Bpro_2744 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386373.1" /db_xref="GI:330823070" /db_xref="GeneID:10481459" /translation="MPTPLAQASAAELQRHLAEFTGRTAAHVRPYGKHLLIQMHRDDD VDTVARLSEVARNKYTAAFRSHTGRWEPLPAPAADLKQTAELVATLLASYLES" gene complement(454753..455763) /locus_tag="Alide2_0439" /db_xref="GeneID:10481460" CDS complement(454753..455763) /locus_tag="Alide2_0439" /EC_number="5.1.3.12" /inference="protein motif:PRIAM:5.1.3.12" /note="KEGG: dia:Dtpsy_0401 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="UDP-glucuronate 5'-epimerase" /protein_id="YP_004386374.1" /db_xref="GI:330823071" /db_xref="InterPro:IPR001509" /db_xref="GeneID:10481460" /translation="MSVTLVTGCAGFIGMHCAQRLLERGERVVGIDNLNAYYDVGLKH ARLGRLHGQGDFTFEQIDVADRDAMHALFARVRPHRVLHLAAQAGVRYSIDQPDDYTD SNLLGFGNILQGCRAQQVEHLVFASSSSVYGGNAKLPFSERDAVDHPVSYYAATKKAN EVMAHAYAHLYGIPTTGLRFFTVYGPWGRPDMALFKFTRAMLAGEAIDVYGQGRLVRD FTYIDDIVEGVLRVLDKPATPDAGHDPLAPNPGTSTAPYRIFNIGNSTPTLLMDYITA LEAALGTTAIKRMLPIQPGDMHSTAADTAALAAWVGFTPATPVREGVARFVHWYRGFY ES" misc_feature complement(454765..455751) /locus_tag="Alide2_0439" /note="UDP glucuronic acid epimerase, extended (e) SDRs; Region: UDP_GE_SDE_e; cd05253" /db_xref="CDD:187563" misc_feature complement(455041..455751) /locus_tag="Alide2_0439" /note="NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370" /db_xref="CDD:189959" misc_feature complement(order(455215..455226,455293..455295, 455305..455307,455380..455388,455455..455457, 455506..455514,455662..455670,455725..455736, 455740..455742)) /locus_tag="Alide2_0439" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187563" misc_feature complement(order(455293..455295,455305..455307, 455380..455382,455452..455454)) /locus_tag="Alide2_0439" /note="active site" /db_xref="CDD:187563" misc_feature complement(order(455113..455115,455137..455139, 455173..455175,455218..455220,455305..455307, 455380..455382)) /locus_tag="Alide2_0439" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187563" gene complement(455760..457277) /locus_tag="Alide2_0440" /db_xref="GeneID:10481461" CDS complement(455760..457277) /locus_tag="Alide2_0440" /inference="similar to AA sequence:KEGG:Dtpsy_0402" /note="KEGG: dia:Dtpsy_0402 glycosyltransferase" /codon_start=1 /transl_table=11 /product="glycosyltransferase" /protein_id="YP_004386375.1" /db_xref="GI:330823072" /db_xref="GeneID:10481461" /translation="MTASTAPRALSSRLPWTHPLFWFAAISLAHVAMRLLASPALKWD EAEQILWTQELALGYGPQPPLYTWLQWAMNQVFGPSVLALSLLKHGLLALTYSLMYLA GRELLDERGAFWASASMVLMPALGWYSVRDQTHTILVTAMACGAWWLLLRIVRRPRPL DFALLGLVCGFGMLAKYSFALVAGAMLLAALSVPEARRALLSRGWWWAPLVGLLVVLP HAAWLLSHLTEATSGTISKMNIQPENGLVKGLLRLLEGVVPSTLLLWALFALWAFRSA WWQRPLAPVSPPMHRVFVRYLGLVLLALAGMVVFAGVSNFKGRWILPLLCMAPLAAFS ARPELQHHPRARRYTIAVATMAVILLVAAGIRPWFSGLRGEVDELNHPSIELADALRA AGYDGTSPIVASDHMLAGMLRVRFPDALVDACAPGEDEIPTCVADHLRRSVQRGQGLL LISRTDYVPSSWWDQAQARIAPRALQSIHLPFHMVRAGTPQAHYEYIWSPHGTQP" misc_feature complement(<456603..457175) /locus_tag="Alide2_0440" /note="4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807" /db_xref="CDD:31992" gene 457381..458412 /locus_tag="Alide2_0441" /db_xref="GeneID:10481462" CDS 457381..458412 /locus_tag="Alide2_0441" /inference="protein motif:PFAM:PF00535" /note="PFAM: Glycosyl transferase, family 2; KEGG: ajs:Ajs_0411 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="family 2 glycosyl transferase" /protein_id="YP_004386376.1" /db_xref="GI:330823073" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10481462" /translation="MNTAPTPTPDVSIVVPIYNEVENLPDLVERIAQAMSAQPLSFEL LAVDDGSRDGSADTLRELAATRPWLRPVFLARNYGQSSALQAGFDRVRGRYVVTLDAD LQNEPGDIPLLLERLETDSSVDMVSGWRKDRQDAELSRKLPSRIANRLISSATGVHLH DYGCALKAYRRPIIDRIRLYGELHRFIPSLAKEAGARITEVPVRHHARTRGVSKYGID RTFRVILDLILIVFFMRYRQRPLHAFGGLGLWLAAPGVLILAWLLLQKVVGEDIGGRP LLLAGVMLVLMGVQMVVAGLIGELLMRIYHEAGGAPQFHAQEYVPDSRVNMPAARDQQ AQAATNNIA" misc_feature 457399..458208 /locus_tag="Alide2_0441" /note="Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463" /db_xref="CDD:30811" misc_feature 457417..457965 /locus_tag="Alide2_0441" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature order(457426..457428,457432..457434,457684..457686) /locus_tag="Alide2_0441" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133030" misc_feature order(457525..457527,457681..457686) /locus_tag="Alide2_0441" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature 457678..457686 /locus_tag="Alide2_0441" /note="DXD motif; other site" /db_xref="CDD:133030" gene 458409..459332 /locus_tag="Alide2_0442" /db_xref="GeneID:10481463" CDS 458409..459332 /locus_tag="Alide2_0442" /inference="similar to AA sequence:KEGG:Ajs_0412" /note="KEGG: ajs:Ajs_0412 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386377.1" /db_xref="GI:330823074" /db_xref="GeneID:10481463" /translation="MKRPFKALLRGLVGLALLGAVVALADPARVWGQLRQAQPGWLLA GLLAGIASNLVSALRWRALARWLGANASTRDACRWYFQAIGLNALLPGAVVGGDVYRA VVLRGAGQDTAASSWSVVLDRLSGLWMLCAIGGLGAAACADVLAPWLRLPRGLFIALM LGGTLLWLALPWCLPALLRSRRFAGGWLAPLREAATRPDFPRQLVWQAGASAAVQLLS AAALAGGGLALGVALPASVWAWAIAPVFLMAALPVSVGGWGTREAAAVAALAPFGVAA SAAVGVGVVYGVYGLAQGALGALAFGLPRKG" sig_peptide 458409..458486 /locus_tag="Alide2_0442" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 26" misc_feature 458484..>458789 /locus_tag="Alide2_0442" /note="Uncharacterised protein family (UPF0104); Region: UPF0104; cl04219" /db_xref="CDD:194802" gene complement(459329..460165) /locus_tag="Alide2_0443" /db_xref="GeneID:10481464" CDS complement(459329..460165) /locus_tag="Alide2_0443" /inference="protein motif:HAMAP:MF_01877" /note="PFAM: Tetrapyrrole methylase; manually curated; TIGRFAM: Uncharacterised protein family UPF0011; KEGG: dia:Dtpsy_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I" /codon_start=1 /transl_table=11 /product="ribosomal RNA small subunit methyltransferase I" /protein_id="YP_004386378.1" /db_xref="GI:330823075" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR008189" /db_xref="GeneID:10481464" /translation="MLATPIGNLADITLRALHVLQLADAIACEDTRHTQALLRAYGID KPTDRLLAVHQHNEAQAAQAVVERLQAGQRIAYVSDAGTPGVSDPGARLVAAAQAAGL RCIPLPGASSVTSALSVCGAIAHAPDGGGFLFAGFLPTKGAERAAAVQRLAAEPRCVV LLEAPHRILDLAHALAALGERRVTLARELTKQFEEVSTHAASGLGAWLQGAPQRVKGE FVVLLHPIPVRQEDGAQAGRVLRLLLAELPVKTAVKLAADITGAPRNALYEQALQIKQ GD" misc_feature complement(459341..460162) /locus_tag="Alide2_0443" /note="Predicted methyltransferases [General function prediction only]; Region: COG0313" /db_xref="CDD:30661" misc_feature complement(459335..460156) /locus_tag="Alide2_0443" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene 460246..460644 /locus_tag="Alide2_0444" /db_xref="GeneID:10481465" CDS 460246..460644 /locus_tag="Alide2_0444" /inference="protein motif:HAMAP:MF_00048" /note="TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: dia:Dtpsy_0406 hypothetical protein; PFAM: Uncharacterised protein family UPF0102" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386379.1" /db_xref="GI:330823076" /db_xref="InterPro:IPR003509" /db_xref="GeneID:10481465" /translation="MGFLGKKINGDAPGRTTRSLGQAAEDRALAHLAAAGLALVERNY RTPGRGGGEIDLVMRERDGTLVFVEVRSRGAAGFGGAAASIGAAKRRRIVLAAQHYLL RWPAQPPCRFDAVLIDGGQVQWLRAAFDAQ" misc_feature 460270..460641 /locus_tag="Alide2_0444" /note="Uncharacterised protein family UPF0102; Region: UPF0102; cl00516" /db_xref="CDD:186051" gene 460705..461307 /locus_tag="Alide2_0445" /db_xref="GeneID:10481466" CDS 460705..461307 /locus_tag="Alide2_0445" /inference="protein motif:PFAM:PF01380" /note="PFAM: Sugar isomerase (SIS); KEGG: dia:Dtpsy_0407 phosphoheptose isomerase" /codon_start=1 /transl_table=11 /product="sugar isomerase (SIS)" /protein_id="YP_004386380.1" /db_xref="GI:330823077" /db_xref="GO:0005529" /db_xref="InterPro:IPR001347" /db_xref="GeneID:10481466" /translation="MLEQRIQQHFIDGADLKYQAAQALSQPIGAAVQAVLACVTNGAK VLACGSGPSAAQAQQFAAFCVMGFERERPELAALALVSDAVWAAASAAGAGADIAALA RQVRALGQAGDLLLAITTGGSEPALLEAVQAAHERDMTVVALCGRDGGALATLLRETD VQICVPHDRAARVREVHALVLHCLCDGVDAQLLGEQEILS" misc_feature 460732..461274 /locus_tag="Alide2_0445" /note="Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006" /db_xref="CDD:88403" misc_feature order(460741..460743,460753..460755,460789..460791, 460798..460800,460858..460860,460876..460881, 461224..461229,461239..461241,461248..461250, 461260..461262,461272..461274) /locus_tag="Alide2_0445" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88403" misc_feature order(460852..460860,461059..461067,461074..461076, 461212..461214,461224..461226) /locus_tag="Alide2_0445" /note="active site" /db_xref="CDD:88403" gene 461304..461969 /locus_tag="Alide2_0446" /db_xref="GeneID:10481467" CDS 461304..461969 /locus_tag="Alide2_0446" /inference="protein motif:PFAM:PF04972" /note="PFAM: Transport-associated; KEGG: ajs:Ajs_0416 transport-associated" /codon_start=1 /transl_table=11 /product="transport-associated protein" /protein_id="YP_004386381.1" /db_xref="GI:330823078" /db_xref="InterPro:IPR007055" /db_xref="InterPro:IPR014004" /db_xref="GeneID:10481467" /translation="MKVPMLRTFGSLLAAATLVGSLAACAPLVIGGGAVMGAMVAVDR RTTGTQVEDEGIEMRTASRIREALSENAHVNVTSYNRQVLLTGEVPSAADSQKAEQIA LAVENVRSVVNDLGVMPSSSLSQRSKDTFITGKVRASLVDAKDLSANAFKVVTERNVV YLMGRVTPREAKRSAEIARGVDGVSKVVRVFEVISEEELSRMAAKPAPVSQDPAAAGQ PAK" sig_peptide 461304..461378 /locus_tag="Alide2_0446" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.457 at residue 25" misc_feature 461313..461876 /locus_tag="Alide2_0446" /note="outer membrane lipoprotein; Provisional; Region: PRK11023" /db_xref="CDD:182907" misc_feature 461484..461660 /locus_tag="Alide2_0446" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" misc_feature 461700..461882 /locus_tag="Alide2_0446" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" gene complement(461998..462930) /locus_tag="Alide2_0447" /db_xref="GeneID:10481468" CDS complement(461998..462930) /locus_tag="Alide2_0447" /EC_number="1.1.1.60" /inference="protein motif:PRIAM:1.1.1.60" /note="KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="2-hydroxy-3-oxopropionate reductase" /protein_id="YP_004386382.1" /db_xref="GI:330823079" /db_xref="InterPro:IPR006115" /db_xref="GeneID:10481468" /translation="MTMNSINPRVYEPAPARRVAFLGLGVMGYPMAGHLARAGHEVTV YNRTATKSEAWCAEFTGADGTKHAKTPREAAQGAEIIFCCVGNDDDLRSVTLGADGAF AGMQPGAIFVDHTTASAEVARELYGAARTLGLQFVDAPVSGGQAGAQNGQLTVMCGGD QAAFDAVRPTGMAFARAFTRIGNSGAGQLAKMVNQVCIAGLVQGLSEAIAFGMHAGLD MPLVLDVIGKGAAQSWQMDNRGKTMALGRFDFGFAVDWMRKDLGLVLDEAKRNGARLP VTALVDQFYGDVQRAGGQRWDTSSLITRLLPAKP" misc_feature complement(462016..462879) /locus_tag="Alide2_0447" /note="3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084" /db_xref="CDD:32267" misc_feature complement(<462220..462879) /locus_tag="Alide2_0447" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(463011..464147) /locus_tag="Alide2_0448" /db_xref="GeneID:10481469" CDS complement(463011..464147) /locus_tag="Alide2_0448" /inference="protein motif:TFAM:TIGR01420" /note="KEGG: ajs:Ajs_0418 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E" /codon_start=1 /transl_table=11 /product="twitching motility protein" /protein_id="YP_004386383.1" /db_xref="GI:330823080" /db_xref="GO:0005524" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR006321" /db_xref="GeneID:10481469" /translation="MERDQASKFINDLLKLMVSRGGSDLFITADFPPAIKVDGKVTKV SPQPLTPVHTLTLARSIMSDKQVADFERTKECNFAIAPAGIGRFRANAFIQQGRVGMV LRTIPLTLPTIDGLGVPQVLKEIAMTKRGLCILVGATGSGKSTTLAAMVDWRNENSFG HIVTVEDPIEFVHPHKNCVVTQREVGLDTDSWEAALKNSLRQAPDVILMGEIRDRETM EHAVAFAETGHLCLATLHANSANQALDRIVNFFPEERRAQLLMDLSLNLKAMVSQRLV PKQDGKGRAAAVEVMLNTPLIADLIFKGEVAEIKEIMKKSRNLGMQTFDQSLFDLFEA NVIGYEDALRNADSINDLRLQIKLSSQRAKTTDLASGTEHFAIV" misc_feature complement(463014..464138) /locus_tag="Alide2_0448" /note="Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilU; COG5008" /db_xref="CDD:34613" misc_feature complement(463164..463760) /locus_tag="Alide2_0448" /note="Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism...; Region: PilT; cd01131" /db_xref="CDD:29997" misc_feature complement(463716..463739) /locus_tag="Alide2_0448" /note="Walker A motif; other site" /db_xref="CDD:29997" misc_feature complement(order(463515..463517,463713..463724, 463728..463730)) /locus_tag="Alide2_0448" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29997" misc_feature complement(463515..463532) /locus_tag="Alide2_0448" /note="Walker B motif; other site" /db_xref="CDD:29997" gene complement(464173..464802) /locus_tag="Alide2_0449" /db_xref="GeneID:10481470" CDS complement(464173..464802) /locus_tag="Alide2_0449" /inference="protein motif:PFAM:PF00027" /note="KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain" /codon_start=1 /transl_table=11 /product="putative Crp/Fnr family transcriptional regulator" /protein_id="YP_004386384.1" /db_xref="GI:330823081" /db_xref="InterPro:IPR000595" /db_xref="GeneID:10481470" /translation="MKGILGLLKSRPQKTGEDSSDSVLFTTAFASQGVDESLLIPWEA RAVEVGAKRLPKSRGGKLLQSLWSKDKYMAHLDQSAVERMERFFEFAAIPPNRDVIRQ DEYGNFMVVLLTGTIAVDRVQPWGEQLRLAETRPGEILGEMSLLDSGIRFSACTTLTD CEVAVLSADAMDEMMSQDPQLAASLVALLARKLSLRLRAVSARLSENQR" misc_feature complement(464263..464586) /locus_tag="Alide2_0449" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature complement(order(464344..464352,464377..464382)) /locus_tag="Alide2_0449" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature complement(order(464263..464268,464278..464286)) /locus_tag="Alide2_0449" /note="flexible hinge region; other site" /db_xref="CDD:28920" gene complement(464867..465910) /locus_tag="Alide2_0450" /db_xref="GeneID:10481471" CDS complement(464867..465910) /locus_tag="Alide2_0450" /inference="protein motif:TFAM:TIGR01420" /note="KEGG: aav:Aave_0637 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E" /codon_start=1 /transl_table=11 /product="twitching motility protein" /protein_id="YP_004386385.1" /db_xref="GI:330823082" /db_xref="GO:0005524" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR006321" /db_xref="GeneID:10481471" /translation="MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVDALDH KTVHAMVYDIMSDAQRKVYEEFLEVDFSFEIEGLARFRVNAFNQNRGAAAVFRTIPSK ILTLEQLNAPKIFADLALKPRGLVLVTGPTGSGKSTTLAGMINHLNETEYGHILTIED PIEFVHESKKCLVNQREVGPMTLSFSAALRSALREDPDAILVGEMRDLETIRLAMTAA ETGHLVFGTLHTSSAAKTIDRIIDVFPAEEKEMVRAMLSESLQAVISQTLCKLKDGSG RVAAHEIMTGTSAIRNLIREAKVAQMYSTIQTSNSVGMQTLDQNLTDLVRRNIISPAE ARSKAKIPENFPG" misc_feature complement(464882..465910) /locus_tag="Alide2_0450" /note="Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilT; COG2805" /db_xref="CDD:32636" misc_feature complement(464948..465544) /locus_tag="Alide2_0450" /note="Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism...; Region: PilT; cd01131" /db_xref="CDD:29997" misc_feature complement(465500..465523) /locus_tag="Alide2_0450" /note="Walker A motif; other site" /db_xref="CDD:29997" misc_feature complement(order(465299..465301,465497..465508, 465512..465514)) /locus_tag="Alide2_0450" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29997" misc_feature complement(465299..465316) /locus_tag="Alide2_0450" /note="Walker B motif; other site" /db_xref="CDD:29997" gene 465950..466672 /locus_tag="Alide2_0451" /db_xref="GeneID:10481472" CDS 465950..466672 /locus_tag="Alide2_0451" /inference="protein motif:TFAM:TIGR00044" /note="KEGG: dac:Daci_1069 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386386.1" /db_xref="GI:330823083" /db_xref="InterPro:IPR001608" /db_xref="InterPro:IPR011078" /db_xref="GeneID:10481472" /translation="MTTIDRNLQRVHERIAQACAAAGRPPGSVALLAVSKTFGAEAVH AAALAGQRAFGENYIQEAVEKMAALRALAPALALQWHCIGPIQSNKTRLVAEHFDWAQ TVDRLKIAQRLSEQRPAHLPPLMVCIQVNVDGGATKSGVGPHDAAVLAEAVARLPRLV LRGVMSIPDDAPTFEAQRALHERAAAVFHHIKAQGFEGLGQFDTLSMGMTGDLEAAVA AGSTMVRVGSGVFGARQYAARC" misc_feature 465956..466648 /locus_tag="Alide2_0451" /note="Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins; Region: PLPDE_III_Yggs_like; cd06824" /db_xref="CDD:143497" misc_feature order(466049..466051,466055..466057,466118..466120, 466196..466198,466448..466450,466574..466576, 466622..466624,466628..466633) /locus_tag="Alide2_0451" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143497" misc_feature 466055..466057 /locus_tag="Alide2_0451" /note="catalytic residue [active]" /db_xref="CDD:143497" gene 466713..467843 /locus_tag="Alide2_0452" /db_xref="GeneID:10481473" CDS 466713..467843 /locus_tag="Alide2_0452" /inference="protein motif:PFAM:PF00266" /note="PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: dia:Dtpsy_0414 aminotransferase class V" /codon_start=1 /transl_table=11 /product="class V aminotransferase" /protein_id="YP_004386387.1" /db_xref="GI:330823084" /db_xref="InterPro:IPR000192" /db_xref="GeneID:10481473" /translation="MPGLLPDVDPDGLLEFSVVYTDRALNHMSRRFTGVMQDILAALK EVYHAHTAVLVPGSGTFGMEAVARQFANDAKVLIVRNGWFSYRWSQIFDAGGLRGGAV VCKARRQGEGPQAPWAPCPANEVAAAIRAEKPRVVFAPHVETASGIILPDDYIRTVSD AAHEVGALFVLDCVASGAMWVDMDKTGVDVLISAPQKGWSGSPCCAMVMLSARAREAI EATQSSSFSCDLKKWMQIAEGYEKGQHAYHTTMPTDALVRLRDVMLETRAYGFEKVRQ EQVALGAKVRALLESRGFPSVAAEGFKAPGVVVSYTTDPGIQSGKKFIDVGLQTASGV PLQCDEGPDFTTFRVGLFGLEKWHNVDRTVGHLAAALDKILG" misc_feature 466785..467825 /locus_tag="Alide2_0452" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(466887..466892,466899..466901,467130..467132, 467226..467228,467235..467237,467292..467294, 467301..467303) /locus_tag="Alide2_0452" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 467301..467303 /locus_tag="Alide2_0452" /note="catalytic residue [active]" /db_xref="CDD:99742" gene complement(467904..468326) /locus_tag="Alide2_0453" /db_xref="GeneID:10481474" CDS complement(467904..468326) /locus_tag="Alide2_0453" /inference="similar to AA sequence:KEGG:Aave_0642" /note="manually curated; KEGG: aav:Aave_0642 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386388.1" /db_xref="GI:330823085" /db_xref="GeneID:10481474" /translation="MQDAKAQFAQRLRDAMAAAGYEPKPAVLEREFNTRHWGKPMTLH GVRRWLLGETMPDHRKLATLADWLGVPVQELGYGDEGGHRVREHQPQWHSGLGYQDKE LFDIYLRLPVPKRRLARDVILAIARAHAAEEAERTGKD" misc_feature complement(<468090..468305) /locus_tag="Alide2_0453" /note="bifunctional HTH-domain containing protein/aminotransferase; Provisional; Region: PRK13355" /db_xref="CDD:183994" gene 468511..469812 /locus_tag="Alide2_0454" /db_xref="GeneID:10481475" CDS 468511..469812 /locus_tag="Alide2_0454" /inference="protein motif:PFAM:PF04286" /note="PFAM: Protein of unknown function DUF445, transmembrane; KEGG: ajs:Ajs_0423 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386389.1" /db_xref="GI:330823086" /db_xref="InterPro:IPR007383" /db_xref="GeneID:10481475" /translation="MHSFPGLHEVADHAGPRRLALALLVLFAAIFAACNLAPRSLWVD GLKAVAEAAMVGALADWFAVAALFRRIPLPLVGRHTDIVARNKDRIGGNLALFVRDRF LDAPSLVAMIRRHDPAGMLAQWLTAPANAGLLGRQVSRLALMALDTVEDEKIQAFLAQ AARALLGRLDLSRSMASALAALTHQGRHQELLDALLERMGGMVRTEEARAFVADTLVQ WIKREHPLKQKVLPTDWLSGKGAAAITHAVDTLLKAVADDPRHELREALDGALARLAE RLQNDPDWARRGEELRAWLQNDEALGRYVRDLWAGLRRSLREDLAREDSELSRRVAEM GQWLGMSLAGDAALRVRLNVRLELWAATFAPDVAQSVAEHIRTTVQRWDAQEMAHLVE QHIGRDLQYIRINGTLVGGLIGLVLFTISHAGALWALLDGG" misc_feature 468688..469725 /locus_tag="Alide2_0454" /note="Protein of unknown function (DUF445); Region: DUF445; pfam04286" /db_xref="CDD:190933" gene complement(469870..471363) /locus_tag="Alide2_0455" /db_xref="GeneID:10481476" CDS complement(469870..471363) /locus_tag="Alide2_0455" /EC_number="1.1.2.4" /inference="protein motif:PRIAM:1.1.2.4" /note="KEGG: dia:Dtpsy_0417 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal" /codon_start=1 /transl_table=11 /product="D-lactate dehydrogenase (cytochrome)" /protein_id="YP_004386390.1" /db_xref="GI:330823087" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="GeneID:10481476" /translation="MTSSPAPTQSERAARQREIVQALSACVPQHALLWQSEDTTPYEC DGLTAYRQRPLVVCLPETEDEVRAVLKTCHALQVPVVARGAGTGLSGGAMPHAMGVTL SLAKFNRILDVDPVSRTARVQCGVRNLAISEAAAPYGLYYAPDPSSQIACTIGGNVAE NSGGVHCLKYGLTVHNVLRVRGFTMEGEPVTFGSEALDAPGYDLLAAVIGSEGMLAVA LEATVRLIPSPQLARCIMASFDDVRKAGDAVAAVIAAGIIPAGLEMMDKPMTAAVEDF VKAGYDLTAEAILLCESDGTPEEVEEEIARMSEVLRGAGATAISVSGSEEERMRFWSG RKNAFPASGRISPDYMCMDSTIPRKRLADILLAIQQMEKKYGLRCCNVFHAGDGNLHP LILFDANDPDQLHRCELFGADILETSVAMGGTVTGEHGVGVEKLNSMCTQFTVEENAQ MMGLKHAFDPAGLLNPGKVIPTLNRCAEYGKMLVRGGRLSHPGLPRF" misc_feature complement(469873..471309) /locus_tag="Alide2_0455" /note="glycolate oxidase subunit GlcD; Provisional; Region: PRK11230" /db_xref="CDD:183043" misc_feature complement(470785..471204) /locus_tag="Alide2_0455" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene complement(471430..472326) /locus_tag="Alide2_0456" /db_xref="GeneID:10481477" CDS complement(471430..472326) /locus_tag="Alide2_0456" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0418 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386391.1" /db_xref="GI:330823088" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481477" /translation="MAAAPFSASAARRIPPIQCLLTFEALARLRSVTQTADELCVTPS AVSHRVKQLEQILGTRLFGRSDFSLTTEGSSYLAQVREGLSALQRLPGHAVSPGRRRL KLAVTPTFARVILIPRLRQFTETYPEIDLALHVSIPLLDVVAEDADLVVRYGPGHYAD MEHVEIARDVLTPLASPGFVREHGPFERPEDLEGLPLLRSPLEPWRTWFAAAGLAWTE PNEGSQFNDVGLMCDAAAAGMGVAPVRLKLAAPWLEQGTLVRLFDIDAPSPYAHYLCW RAGTMERWECAAFADWLRRSMA" misc_feature complement(471448..472293) /locus_tag="Alide2_0456" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(472108..472269) /locus_tag="Alide2_0456" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(471448..472026) /locus_tag="Alide2_0456" /note="HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432" /db_xref="CDD:176123" misc_feature complement(order(471922..471942,471946..471999, 472003..472026)) /locus_tag="Alide2_0456" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176123" misc_feature complement(order(471583..471585,471643..471651, 471997..471999,472003..472008)) /locus_tag="Alide2_0456" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176123" gene complement(472326..473174) /locus_tag="Alide2_0457" /db_xref="GeneID:10481478" CDS complement(472326..473174) /locus_tag="Alide2_0457" /EC_number="3.5.1.10" /inference="protein motif:TFAM:TIGR00655" /note="TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: xtr:100487869 formyltetrahydrofolate deformylase-like; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT" /codon_start=1 /transl_table=11 /product="formyltetrahydrofolate deformylase" /protein_id="YP_004386392.1" /db_xref="GI:330823089" /db_xref="GO:0008864" /db_xref="InterPro:IPR002376" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR004810" /db_xref="GeneID:10481478" /translation="MTPAYILTLSCPDRLGLVHAVSGFLLEHGGNIEEAAQYNDDATG LFFMRVQFACSQHDGATLKEHLARFAEPYAMRWSLHAKAEAMRTVLLVSREGHCLNDL LFRVKSGLLPIDVRAIISNHRDFYQLAASYNIPFHHIPVTAATKAQAEARQYEIIESE GAELVVLARYMQVLSNELCARLAGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATA HYVTADLDEGPIIEQDVARADHTDTVEDLTARGRDTESQVLARAVKWHSEHRVLLNGH KTVVFR" misc_feature complement(472329..473174) /locus_tag="Alide2_0457" /note="formyltetrahydrofolate deformylase; Reviewed; Region: purU; PRK06027" /db_xref="CDD:180354" misc_feature complement(472944..473159) /locus_tag="Alide2_0457" /note="N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); Region: ACT_F4HF-DF; cd04875" /db_xref="CDD:153147" misc_feature complement(472332..472919) /locus_tag="Alide2_0457" /note="Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Region: FMT_core_Formyl-FH4-Hydrolase_C; cd08648" /db_xref="CDD:187717" misc_feature complement(order(472497..472502,472509..472514, 472518..472520,472578..472580,472602..472613, 472638..472640,472653..472676,472881..472886, 472899..472901)) /locus_tag="Alide2_0457" /note="putative active site [active]" /db_xref="CDD:187717" misc_feature complement(order(472410..472412,472602..472604, 472608..472610,472668..472673,472881..472886)) /locus_tag="Alide2_0457" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187717" misc_feature complement(order(472497..472502,472509..472514, 472611..472613,472638..472640,472653..472661, 472665..472667,472674..472676)) /locus_tag="Alide2_0457" /note="putative cosubstrate binding site; other site" /db_xref="CDD:187717" misc_feature complement(order(472497..472499,472605..472607, 472611..472613)) /locus_tag="Alide2_0457" /note="catalytic site [active]" /db_xref="CDD:187717" gene 473220..475886 /locus_tag="Alide2_0458" /db_xref="GeneID:10481479" CDS 473220..475886 /locus_tag="Alide2_0458" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-3; PAS fold-4; KEGG: ctt:CtCNB1_4372 diguanylate cyclase/phosphodiesterase with; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase" /protein_id="YP_004386393.1" /db_xref="GI:330823090" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013655" /db_xref="InterPro:IPR013656" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10481479" /translation="MGSNAPGAVPRIAPWWGMALYLLAGAVWVAVGDGLLAHWVQDPH LLARWQTFKGWLYVAFTGVLAWWLLTRMRSAERARSALAQERVQIERHAPVGIARVEP AGMRFLSANERLCAWLELPPQAIVQRHFDELVAPDDRASAQRQLQQLLSGQAGHFQGE RLCLRAGGGPPLPVLCTVSLVPAAQDEPAHLLCVLQDMGGINAARAALARSENILRLA LDGSGSGMWDWDLAQRRITGSQGLLRLLRYRGAELPRGLNLLRRVHPEDRHRLHRAVQ RAIAAGGSFDETARLQRFDGSYCWFQARGQCHRDAQGRPERFSGILADLTDLRTAEER QRLASTVLDNAVEGVVVADAHARILSINPVVTRVLGYTEEELLGRNPRVFQSGRHDKA FYETMWEAVRRTGHWQGEIWNRRKNGEIFPERMSLSAVRDAQGAVTHYVCMFSDISQE KAQHQRLEFLSHRDSLTGLPNRAWFVEQLGQALCQAQVHGEQMAVLLLNLDRFKDVND SYGHAVGDEVLRHITAQVCMSLRPGDLVGRMAGDEIAVLARNLRHSDGAAAVAQYMIA AASKPWRTPDGIEVVAGVSVGISMFPEHARTAEQLLQGAHSAVYGAKARGRGAHCFFD ESMIQAARERLEIEARLRSALAQGHLRLYYQPQVDIATGRIVGAEALLRWLDPEEGVI SPARFISVAETSGVIGPLGRWVMQEACSQGQRWRAAGLPGIRLAVNVSPYQFQLTDVA ACAAQALEDSGLPPHCLELELTESALAERPEAMRQVLQRLQALGVRIAVDDFGTGYSS LAHLKRFPIDALKIDQGFIRDIPSSADDMAISATIIAMGRSLGLTVLAEGVETPEQLA FLRARGCDSYQGYLCSRPVPAEQFGALLQAQA" misc_feature 473883..474194 /locus_tag="Alide2_0458" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature 473892..474578 /locus_tag="Alide2_0458" /note="FOG: PAS/PAC domain [Signal transduction mechanisms]; Region: AtoS; COG2202" /db_xref="CDD:32384" misc_feature order(473931..473933,473943..473945,473961..473963, 474003..474014,474090..474092,474105..474107) /locus_tag="Alide2_0458" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(473994..473996,474006..474008,474030..474032, 474039..474044,474126..474128,474132..474134) /locus_tag="Alide2_0458" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 474258..474560 /locus_tag="Alide2_0458" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(474300..474302,474312..474314,474330..474332, 474369..474380,474456..474458,474471..474473) /locus_tag="Alide2_0458" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(474360..474362,474372..474374,474396..474398, 474405..474410,474492..474494,474498..474500) /locus_tag="Alide2_0458" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 474603..475082 /locus_tag="Alide2_0458" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(474714..474716,474843..474845) /locus_tag="Alide2_0458" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(474729..474731,474738..474743,474753..474755, 474765..474767,474831..474833,474837..474848) /locus_tag="Alide2_0458" /note="active site" /db_xref="CDD:143635" misc_feature order(474819..474821,474903..474905) /locus_tag="Alide2_0458" /note="I-site; other site" /db_xref="CDD:143635" misc_feature 475158..475856 /locus_tag="Alide2_0458" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(475887..476747) /locus_tag="Alide2_0459" /db_xref="GeneID:10481480" CDS complement(475887..476747) /locus_tag="Alide2_0459" /inference="protein motif:PFAM:PF04187" /note="PFAM: Domain of unknown function DUF399; KEGG: dia:Dtpsy_0421 protein of unknown function DUF399" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386394.1" /db_xref="GI:330823091" /db_xref="InterPro:IPR007314" /db_xref="GeneID:10481480" /translation="MRPTIPRLPRPGSLLPPLLLALLLLPGCAALPSAPPPLDAAWQA QLERWPAVDALLLGEQHDAAAHQRWQQGTVRWLAERGRLAALVVEMADAGQGTDGLPP DAGAAQVRAALRWNGDAWPWQRYAPVVMAAVAAGVPVRGGNLPRSRMRAAMQDAALDA HLPPAALALQREAIAEGHCGLLPPDRLMPMVRVQLARDASMARAVLDARQSGRTVLLV AGFGHVRRDLGVPTWLPAWFTSKTAIAQAGQAPSAIESEANYIHATPALAPQDYCAPL RGPGTATPVR" sig_peptide complement(476625..476747) /locus_tag="Alide2_0459" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.932 at residue 41" misc_feature complement(476040..476627) /locus_tag="Alide2_0459" /note="Protein of unknown function, DUF399; Region: DUF399; cl01139" /db_xref="CDD:154223" gene 477014..479449 /locus_tag="Alide2_0460" /db_xref="GeneID:10481481" CDS 477014..479449 /locus_tag="Alide2_0460" /EC_number="1.17.4.1" /inference="protein motif:TFAM:TIGR02504" /note="TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent" /protein_id="YP_004386395.1" /db_xref="GI:330823092" /db_xref="GO:0000166" /db_xref="GO:0004748" /db_xref="GO:0031419" /db_xref="InterPro:IPR000788" /db_xref="InterPro:IPR013344" /db_xref="InterPro:IPR013509" /db_xref="GeneID:10481481" /translation="MQRETTDLAPSLSTQPISMDVLKEKYFKDGESDVEDLFRRVARA LASVEREDIREAMQARFLDNLRAGAIGAGRIMSAAGTDIQATLINCFVQPVGDCIQGV DDAGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGAMVKGTASMASGPCSYINVFDQ SCSTVESAGARRGAQMGVLRIDHPDVLDFITAKRTPGRWNNFNVSVGVPDAFMQAVEQ DREWELVHSAAPGAELLKEGARQRADGQWIYRTVRARELWDTIMKSAYDFAEPGILFL DQINTDNNLHYTETIQATNPCGEQPLPPYGCCDLGPIILTRFVRNPFGLHGEASFDFD AFEQAVATQVRALDNVLDVTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQ DGRDMAVKIAERMRNAAYRASVELAKEKGAFPKFQADGYLAKGTFASRLPEDIQKQIR KHGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGSKSEYVVEDYA WRLYKTLGGDVNQLPAYFVSAMDMAAADHVAMMEAVQPYVDTAISKTVNVPEDYPYDD FKGLYMQAWHSGLKGLATYRPNSILGAVLEVPAAEAKPAKSEPAPEPVQPFDPMRVVI ESRPKGGLSAVAEKIEYWTQEGHKRLYLIVSFLPVPDGHGGTVDRAIEFFMPVGQSSE SQQWITSSMRLLSLAARGGFLERALSDMRKVAWDRGPVRLGTYQRADGAQVPLWHDSE VAAVAYAVQNILARRAEAPQQQVLPLDEPDMPAGMPPAMAGKKCQECGAHAVIRKDGC DYCTQCGALGSCG" misc_feature 477059..477265 /locus_tag="Alide2_0460" /note="Ribonucleotide reductase, all-alpha domain; Region: Ribonuc_red_lgN; pfam00317" /db_xref="CDD:189500" misc_feature 477074..478798 /locus_tag="Alide2_0460" /note="ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Region: NrdJ_Z; TIGR02504" /db_xref="CDD:188229" misc_feature 477203..478777 /locus_tag="Alide2_0460" /note="Class II ribonucleotide reductase, dimeric form; Region: RNR_II_dimer; cd02888" /db_xref="CDD:153089" misc_feature order(477227..477232,477278..477280,477383..477391, 477524..477529,477533..477535,477896..477904, 477908..477910,477941..477943,478400..478417) /locus_tag="Alide2_0460" /note="active site" /db_xref="CDD:153089" misc_feature order(477263..477265,477332..477337,477344..477349, 477353..477358,477365..477370,477377..477379, 477431..477433,477440..477451,477458..477460, 477473..477475,477482..477484,477491..477496, 477503..477505,477509..477517,477521..477523) /locus_tag="Alide2_0460" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153089" misc_feature order(477302..477304,477329..477334,477341..477343, 477377..477379,477416..477418,477434..477436, 477440..477442,477455..477460,477473..477475, 477503..477511) /locus_tag="Alide2_0460" /note="effector binding site; other site" /db_xref="CDD:153089" gene 479628..481544 /locus_tag="Alide2_0461" /db_xref="GeneID:10481482" CDS 479628..481544 /locus_tag="Alide2_0461" /inference="protein motif:PFAM:PF02518" /note="KEGG: dia:Dtpsy_0423 GAF sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; HAMP linker domain; GAF; SMART: ATPase-like, ATP-binding domain; HAMP linker domain" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_004386396.1" /db_xref="GI:330823093" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="GO:0046983" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR011712" /db_xref="GeneID:10481482" /translation="MRKKPTLSTKLLAMGTVFLLVALASIGFTLWVTWQLEGGAAAVN EAGRLRMNMLRMILAQQNESPQEFARLKQRFNDGLELLRTGDPARPLFVPWNDETRTQ YEHIRSQWLLLQQEWKMSLPQESGAAAVARGDAFVSEIDGFVQAIEVRIMRWTAVLHL FHLFLVALAIGSAVAFMALSYLLVLNPVTRLQQALGRVRQGDLGTRLEVETEDEFGQL AAGFNLMAHALQASHEGLERKVREKTATIEVRNQRLSALYAVSALAGEAGSLEALAQG FVQQIRSVAGCDAAALRWSDEANQRYVLLAADGLPKSLAEEEHCLNTGTCECGQAQER ARMRVIPIVPAGRLQLPHCREAGYETVVSIPVQLHQRLLGEVTLFFRTTLDLSEDMRE LLSTMARHLASSMEGLRATALEREAAVAEERSLIARELHDSIAQSLAFLKIQTQLLRD AVAKGNTEARDRSMAELDVGVRECYADVRELLVHFRTRTQDEDIEEALRATLSKFEHQ TGVAAALSMSGQGLPLAPDVQIQVLHIVQEALSNVRKHAGARHVQLRVQRHPWRFEVQ DDGSGFDPQAVPPDSLHVGLGIMRERAQRIGASLRLESRAGGGGTCVTLELPAAGVDE RLPDAITTPFIAAA" sig_peptide 479628..479711 /locus_tag="Alide2_0461" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.869) with cleavage site probability 0.339 at residue 28" misc_feature 479637..481481 /locus_tag="Alide2_0461" /note="Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]; Region: NarQ; COG3850" /db_xref="CDD:33640" misc_feature 480177..480320 /locus_tag="Alide2_0461" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cd06225" /db_xref="CDD:100122" misc_feature order(480177..480182,480189..480194,480198..480203, 480210..480215,480219..480221,480267..480272, 480276..480281,480288..480293,480297..480302, 480309..480314) /locus_tag="Alide2_0461" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100122" misc_feature 480459..480833 /locus_tag="Alide2_0461" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 480903..481094 /locus_tag="Alide2_0461" /note="Histidine kinase; Region: HisKA_3; pfam07730" /db_xref="CDD:191831" misc_feature 481227..481478 /locus_tag="Alide2_0461" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(481239..481241,481251..481253,481260..481262, 481320..481322,481326..481328,481332..481334, 481338..481343,481374..481385,481431..481433, 481437..481439,481455..481460,481464..481466) /locus_tag="Alide2_0461" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 481251..481253 /locus_tag="Alide2_0461" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(481332..481334,481338..481340,481374..481376, 481380..481382) /locus_tag="Alide2_0461" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 481541..482215 /locus_tag="Alide2_0462" /db_xref="GeneID:10481483" CDS 481541..482215 /locus_tag="Alide2_0462" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_0424 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain" /codon_start=1 /transl_table=11 /product="two component LuxR family transcriptional regulator" /protein_id="YP_004386397.1" /db_xref="GI:330823094" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:10481483" /translation="MTATPITLFLIDDHTLLRRGLVALLSQYGDLCVVGEAGDAAEAL RLLPQLRPDVILLDNHLPGVRGVDAIAGLREASQGSRVIMLTVSEDGEDLGAALRHGA QGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPEPDPGPMPQEDPA PQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAVYAS DRQRAE" misc_feature 481541..482209 /locus_tag="Alide2_0462" /note="transcriptional regulator NarL; Provisional; Region: PRK10651" /db_xref="CDD:182619" misc_feature 481565..481909 /locus_tag="Alide2_0462" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(481574..481579,481712..481714,481736..481738, 481796..481798,481853..481855,481862..481867) /locus_tag="Alide2_0462" /note="active site" /db_xref="CDD:29071" misc_feature 481712..481714 /locus_tag="Alide2_0462" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(481721..481726,481730..481738) /locus_tag="Alide2_0462" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 481862..481870 /locus_tag="Alide2_0462" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 482027..482191 /locus_tag="Alide2_0462" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(482030..482038,482075..482083,482105..482110, 482114..482119,482123..482137,482168..482170) /locus_tag="Alide2_0462" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(482063..482065,482069..482071,482075..482077, 482168..482176,482183..482185) /locus_tag="Alide2_0462" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 482444..483739 /locus_tag="Alide2_0463" /db_xref="GeneID:10481484" CDS 482444..483739 /locus_tag="Alide2_0463" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_0434 major facilitator superfamily transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004386398.1" /db_xref="GI:330823095" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10481484" /translation="MASASHPAAQDSRRNRQAWSVLIVSTLAFTVCFMVWMMFGVIGI PIKKMLNLNATQFGLLTAMPVLTGSLVRVPLGIWTDRYGGRIVMALLMAATVPAIWFM GSATEYWHFLVIGLFVGLAGGSFSVGTPYVARWFPRQRQGMAMGVYGAGNSGAAVNKF VAPVILVAFGWAAVPHVYAAIMLGTLVLFWLFSYSDPAHLVPSHVKFSDQLKALKDPK VLKYCQYYSIVFGGYVALSLWMVQYYVGEYGLDIRVAALLAACFSLPGGVLRAIGGVL SDKYGAHSVTWWVMWVCWICLFLLSYPQTDFTVVTVDGPKTFHIGLNVYVFTALMFAL GIAMAFGKASVFKYISDDYPGNIGTISGIVGLAGGMGGFILPIMFGVLMDWTGIRSSA FMLMYGVVWVSLIWMYFTEVRRTDLMASQGTSGTVPASR" misc_feature 482462..483709 /locus_tag="Alide2_0463" /note="Nitrate/nitrite transporter [Inorganic ion transport and metabolism]; Region: NarK; COG2223" /db_xref="CDD:32405" misc_feature 482507..483670 /locus_tag="Alide2_0463" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(482549..482551,482558..482566,482570..482575, 482624..482626,482633..482638,482645..482647, 482657..482662,482666..482671,482807..482812, 482819..482824,482831..482833,482840..482842, 482876..482881,482888..482893,482906..482908, 483131..483133,483140..483145,483152..483157, 483164..483166,483206..483208,483218..483220, 483230..483232,483239..483241,483251..483253, 483446..483448,483455..483460,483467..483469, 483479..483484,483491..483493,483521..483526, 483533..483538,483545..483550,483557..483559) /locus_tag="Alide2_0463" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 483758..485203 /locus_tag="Alide2_0464" /db_xref="GeneID:10481485" CDS 483758..485203 /locus_tag="Alide2_0464" /inference="protein motif:TFAM:TIGR00886" /note="KEGG: xtr:100497879 nitrite extrusion protein 1-like; TIGRFAM: Nitrate transporter; PFAM: Major facilitator superfamily MFS-1" /codon_start=1 /transl_table=11 /product="nitrite transporter" /protein_id="YP_004386399.1" /db_xref="GI:330823096" /db_xref="GO:0015103" /db_xref="InterPro:IPR004737" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10481485" /translation="MSANSATQRDSRAGRLLTLWTPEDKQFWEREGEAVAKLNLWISV PALFLAFAIWQVWSVVAVNLPALGFKYSTNQLFWLAAAPALSGATLRIFYSFMVPVFG GRRWTALSTASLLIPAIGIGYAVQDNTTGYPTMLVLALLCGLGGGNFSSSMANISFFF PKERKGSALGVNAGLGNLGVSVVQFLSPLVITAGVFGVFGGDSQTIVKNGEHVQVWAQ NAAFIWVPWIAIASVAAWFGMHDIADAKASFAAQAAIFRAKHNWIMCWLYLGTFGSFI GFAAGFPLLIKSQFPDVNPLAYAWLGPLLGALIRPFGGWLSDKVGGGVVTFWNFIVMA LAVLGVLFFLPKGMSAYAFPFGPAQGSFTGFFLMFLVLFCTTGIGNGSTFRMIPVIFL NQKLRLLRGNDEAAQAQAIKDGNTEGAAAVGFAGALGAYGGFFIPKSYGSSIAATGGP EFALWMFAVFYVACIVITWWYYSRKNAEMPC" misc_feature 483773..485182 /locus_tag="Alide2_0464" /note="nitrate/nitrite transport protein NarU; Provisional; Region: PRK15034" /db_xref="CDD:184994" gene 485240..489034 /locus_tag="Alide2_0465" /db_xref="GeneID:10481486" CDS 485240..489034 /locus_tag="Alide2_0465" /EC_number="1.7.99.4" /inference="protein motif:TFAM:TIGR01580" /note="SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Nitrate reductase, alpha subunit; KEGG: ajs:Ajs_0436 respiratory nitrate reductase alpha subunit apoprotein; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain" /codon_start=1 /transl_table=11 /product="nitrate reductase subunit alpha" /protein_id="YP_004386400.1" /db_xref="GI:330823097" /db_xref="GO:0008940" /db_xref="InterPro:IPR006468" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:10481486" /translation="MSHFLDRLSYFAQPRETFSQGHGQTNGEDRTWEDAYRDRWAHDK VVRSTHGVNCTGSCSWKIYVKGGIVTWETQQTDYPRTRPDLPNHEPRGCARGASYSWY LYSANRVKYPMVRGRLLKHWRAALAVAKSPVDAWAAIVQNDEARREWQKQRGLGGFVR STWDEVNQMIAAANVYTIKQYGPDRIIGFSPIPAMSMISYAAGSRYLNLIGGVPMSFY DWYCDLPPSSPQVWGEQTDVPESADWYNSNFIIAWGSNVPQTRTPDAHFFTEVRYKGA KIVSVTPDYSEVAKLADLWMHPKQGTDAAVAMAMGHVILKEFYFDKRSAYFDDYARRY TDLPLLVVLKEKQLPDGRTAMVPDRYVRASDFGDKLGQSNHPDWKTVAYDVDGKVALP NGSIGFRWGKEGRPDQGLWNLEAKEAQGGNDVKLKLSVLEDGAQAHEVVDVAFPYFGG IESPNFKANDQGGDVIVRRVPITHLELSGEGVAGRVAVATVFDLQVANYGVLRGLAGE ERDDGYDANAPYTPAWQESITGVPRDQVIAVARQFADNADKTHGRSMVIIGAAMNHWY HCDMNYRGIINMLMMCGCIGQSGGGWSHYVGQEKLRPQTGWTALAFALDWIRPPRQQN STSFFYAHTDQWRYEKLGVEEVLSPLADKSGYQGSMIDFNVRSERMGWLPSAPQLQLN PLQVVKDAQAKGVDPKDYVVQSLKDGSLTLSCEDPDNPLNWPRNMFVWRSNILGSSGK GHEYFLKHLLGTTHGVQGKDLGPQEAKPQEVKWHANAPEGKLDLLVTLDFRMSTTCLY SDIVLPTATWYEKNDLNTSDMHPFIHPLSAAVDPAWQARSDWEIYKGFAKAFSEVCEG HLGVEKEVVLTPIMHDTPAELAQPYGVKDWKNGEIDLIPGVTAPQITVVERDYPNTYQ RFTALGPLMDRIGNGGKGISWNTETEVAQLGDLNGRVREEGATQGRPRIVSDIDATEV VMMLAPETNGHVACKAWEALSKQTGRDHVHLALHREDEKIRFRDIQAQPRKIISSPTW SGLESEKVSYNAGYTNVHELIPWRTLTGRQQFYQDHPWMRDFGEGFVSYRPPVHLKTL HEVEGKKPNGNPEIALNFITPHQKWGIHSTYSDNLHMLTLNRGGPVIWLSEDDARRGG IVDNDWVELFNANGAIAARAVVSQRVNPGMVLMYHAQEKIINTPGSEITGTRGGIHNS VTRIVLKPTHMIGGYAQYSYGFNYYGTIGTNRDEFVLVRKMRRVDWMDEEAGQSTASA HA" misc_feature 485240..488989 /locus_tag="Alide2_0465" /note="Nitrate reductase alpha subunit [Energy production and conversion]; Region: NarG; COG5013" /db_xref="CDD:34618" misc_feature 485366..>486280 /locus_tag="Alide2_0465" /note="Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate...; Region: MopB_Nitrate-R-NarG-like; cd02750" /db_xref="CDD:73319" misc_feature order(485387..485389,485399..485401,485411..485413, 485417..485419,485516..485518) /locus_tag="Alide2_0465" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:73319" misc_feature <486797..>487039 /locus_tag="Alide2_0465" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature <487406..487789 /locus_tag="Alide2_0465" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature <488390..488482 /locus_tag="Alide2_0465" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature 488549..488968 /locus_tag="Alide2_0465" /note="Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate...; Region: MopB_CT_Nitrate-R-NarG-like; cd02776" /db_xref="CDD:30308" misc_feature order(488561..488572,488579..488593,488780..488782, 488846..488848,488942..488947) /locus_tag="Alide2_0465" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:30308" gene 489053..490576 /locus_tag="Alide2_0466" /db_xref="GeneID:10481487" CDS 489053..490576 /locus_tag="Alide2_0466" /EC_number="1.7.99.4" /inference="protein motif:TFAM:TIGR01660" /note="KEGG: dia:Dtpsy_0428 nitrate reductase, beta subunit; TIGRFAM: Nitrate reductase, beta subunit" /codon_start=1 /transl_table=11 /product="nitrate reductase subunit beta" /protein_id="YP_004386401.1" /db_xref="GI:330823098" /db_xref="GO:0008940" /db_xref="InterPro:IPR006547" /db_xref="GeneID:10481487" /translation="MKIRAQIGMVLNLDKCIGCHTCSVTCKNVWTSRPGMEYAWFNNV ESKPGIGYPKEWENQDKWNGGWTRLADGSIVPRQGGKWKLLMRIFANPNLPQIDDYYE PFTFDYDHLQSAPESKAAPTARPRSLITGQRMEKIEWGPNWEEILGGEFAKRSADVNF EQVQKDMYGQFENTFMMYLPRLCEHCLNPACVASCPSGSIYKREEDGIVLIDQDKCRG WRMCVSGCPYKKIYYNWQTGKAEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDA DRIQEAASVERDRDLYEAQLGIFLDPNDPEVIRQAKLDGIADNWLEAARNSPVYKMAV DWKVALPLHPEYRTLPMVWYVPPLSPITSAANAGHVGVNGEIPDVSQLRIPVQYLANM LTAGDTGPVVRALERMLAMRAYQRGLHVDKVQNMAVLQQAGLTVHDVQDMYQVMAIAN YEDRFVIPSTHREYAENAFDVRGGCGFSFGNGCSDGASDVSIFGGKKPRTIPIKAVV" misc_feature 489053..490468 /locus_tag="Alide2_0466" /note="nitrate reductase, beta subunit; Region: narH; TIGR01660" /db_xref="CDD:130721" gene 490588..491289 /locus_tag="Alide2_0467" /db_xref="GeneID:10481488" CDS 490588..491289 /locus_tag="Alide2_0467" /EC_number="1.7.99.4" /inference="protein motif:TFAM:TIGR00684" /note="TIGRFAM: Nitrate reductase chaperone, NarJ; KEGG: dia:Dtpsy_0429 nitrate reductase molybdenum cofactor assembly chaperone; PFAM: DMSO/Nitrate reductase chaperone" /codon_start=1 /transl_table=11 /product="nitrate reductase molybdenum cofactor assembly chaperone" /protein_id="YP_004386402.1" /db_xref="GI:330823099" /db_xref="GO:0051082" /db_xref="InterPro:IPR003765" /db_xref="InterPro:IPR020945" /db_xref="GeneID:10481488" /translation="MFKKTPESMRLTLRALARLVAYPDAGLRAQMPTLVDALQSEQVL PAARMAELQALVQQICAMDPYEAEERYVDTFDRGRQTSLHLFEHIHGDSRERGPALID LTQTYEKAGLYLDAQELPDHLGVVLEFASTQPAQVAREFLAEMAHILNALFTALQAKG SPYASVVAAVLEAAGEKAQAVAIAPEPGLDEAWAEPEAFDGCATRGQNRPGQPQPLHF VRNARSNPSSQGVSP" misc_feature 490651..491127 /locus_tag="Alide2_0467" /note="Nitrate reductase delta subunit; Region: Nitrate_red_del; cl00958" /db_xref="CDD:186283" gene 491286..492014 /locus_tag="Alide2_0468" /db_xref="GeneID:10481489" CDS 491286..492014 /locus_tag="Alide2_0468" /EC_number="1.7.99.4" /inference="protein motif:TFAM:TIGR00351" /note="TIGRFAM: Nitrate reductase, gamma subunit; KEGG: dia:Dtpsy_0430 respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit" /codon_start=1 /transl_table=11 /product="respiratory nitrate reductase subunit gamma" /protein_id="YP_004386403.1" /db_xref="GI:330823100" /db_xref="GO:0008940" /db_xref="InterPro:IPR003816" /db_xref="GeneID:10481489" /translation="MTAWIDHFLFGLYPYICLAVFFIGSWVRFDRDQYTWKSDSSQLL RTGSLRWASNLFHIGVLFLFFGHFVGMLTPHALYEPFISAGNKQLLAMVSGGAAGLLA FIGVTLLLHRRLTDARIRATSKTSDIALLWIFWVQLALGLATIPLSAQHLDGSVMMRL AEWGQRIVTFRSGAVEMLVGTGWIFKVHLFLGMTVFLIFPFTRLVHIWSGFGTLAYVL RPYQLVRARRLNVPAGQNQPRRSL" misc_feature 491295..491966 /locus_tag="Alide2_0468" /note="Nitrate reductase gamma subunit; Region: Nitrate_red_gam; cl00959" /db_xref="CDD:163938" gene 492142..492969 /locus_tag="Alide2_0469" /db_xref="GeneID:10481490" CDS 492142..492969 /locus_tag="Alide2_0469" /inference="protein motif:PFAM:PF00639" /note="PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_0431 PpiC-type peptidyl-prolyl cis-trans isomerase" /codon_start=1 /transl_table=11 /product="PpiC-type peptidyl-prolyl cis-trans isomerase" /protein_id="YP_004386404.1" /db_xref="GI:330823101" /db_xref="GO:0016853" /db_xref="InterPro:IPR000297" /db_xref="GeneID:10481490" /translation="MTTTTCGSHACGCGGSAAPVADTPVARINGIALHAPGEQLPEEL LRQRACTELLRQQAQREGLLAQDDAPGMDGATSIAATQAIEQLLERALQVPEPSEEAC RRYHAAHPTLHGEGERLRLRHVLFAVTPGVDVKQLRQRAESVLLDLRCDDDGGVRFAE AARQWSNCPSGQQGGELGWLTQADCAPEFAREIFGKAEVGVLSRLVHSRFGLHVVEVC EREAGRALAFEEVQASVALLLRQQAWINALRQYLQLLAGAAEVEGVQLDAADTPLVQ" misc_feature <492310..492906 /locus_tag="Alide2_0469" /note="nitrogen fixation protein NifM; Region: nifM_nitrog; TIGR02933" /db_xref="CDD:131979" misc_feature 492508..492792 /locus_tag="Alide2_0469" /note="PPIC-type PPIASE domain; Region: Rotamase; cl08278" /db_xref="CDD:195679" gene 493004..493681 /locus_tag="Alide2_0470" /db_xref="GeneID:10481491" CDS 493004..493681 /locus_tag="Alide2_0470" /EC_number="4.2.1.1" /inference="protein motif:PRIAM:4.2.1.1" /note="PFAM: Carbonic anhydrase; KEGG: dia:Dtpsy_0432 carbonate dehydratase; SMART: Carbonic anhydrase" /codon_start=1 /transl_table=11 /product="carbonate dehydratase" /protein_id="YP_004386405.1" /db_xref="GI:330823102" /db_xref="InterPro:IPR001765" /db_xref="GeneID:10481491" /translation="MPDDELLQRLRRFHLDDFPQYREQFQTLVDQGQHPTTLFIGCSD SRLVPYLLTGAGPGELFLVRNVGAFVPPYDGSYGHHGTAAAIEFAVLNLNVSRIVVCG HSHCGAIKALYGDVSPEAKNLQRWLDLGREAVLPVQPGPEALRRTEQRAVVLQLERLM DYPMVRRRVQDGRITLHGWHYVIEEGEVHVFDVQNGGFVAASKAQSSGTGPYPPYVEH DGQVLVD" misc_feature 493028..493576 /locus_tag="Alide2_0470" /note="Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeB; cd00884" /db_xref="CDD:48223" misc_feature order(493100..493102,493106..493108,493127..493129, 493133..493141,493175..493177,493184..493186, 493265..493267,493280..493282,493310..493312, 493319..493321,493544..493546) /locus_tag="Alide2_0470" /note="active site clefts [active]" /db_xref="CDD:48223" misc_feature order(493127..493129,493133..493135,493310..493312, 493319..493321) /locus_tag="Alide2_0470" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:48223" misc_feature order(493130..493141,493145..493147,493151..493162, 493175..493183,493187..493189,493193..493195, 493250..493255,493262..493267,493379..493381, 493544..493546,493550..493555,493559..493561, 493565..493567) /locus_tag="Alide2_0470" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48223" gene 493681..494331 /locus_tag="Alide2_0471" /db_xref="GeneID:10481492" CDS 493681..494331 /locus_tag="Alide2_0471" /inference="protein motif:PFAM:PF00881" /note="PFAM: Nitroreductase-like; KEGG: dia:Dtpsy_0434 nitroreductase" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_004386406.1" /db_xref="GI:330823103" /db_xref="GO:0016491" /db_xref="InterPro:IPR000415" /db_xref="GeneID:10481492" /translation="MAGRVEAMQAPPADWAAALLQARQTILPKRLGAPGPDAAQLQAI MAAAAHAPDHGCLLPWRFVLVPQEARTALAEAFAQALRERDPEATPAQQEQAREKAYR APVLLLLVVDELRDDPGIAPCERILSAGCAVQNLLLTATALGFGSALTSGKALQSQAL RTLFALQEGERALCFVSVGTVLSRKPGRARPAPAQYVGTLVPGRGVQPWKQERTLA" misc_feature 493747..494220 /locus_tag="Alide2_0471" /note="Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-...; Region: Arsenite_oxidase; cd02135" /db_xref="CDD:48382" misc_feature order(493750..493752,493756..493758,493768..493770, 493843..493845,494131..494136) /locus_tag="Alide2_0471" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:48382" gene 494328..494747 /locus_tag="Alide2_0472" /db_xref="GeneID:10481493" CDS 494328..494747 /locus_tag="Alide2_0472" /inference="similar to AA sequence:KEGG:Dtpsy_0435" /note="KEGG: dia:Dtpsy_0435 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386407.1" /db_xref="GI:330823104" /db_xref="GeneID:10481493" /translation="MKTEINSFDDLLRAARAHRERQRLLFVFAGSELPDDATPAQRER FAQGEGGVLVPLMCVDKLPEEIESFDALLRESRQFENPAQPWRLVFTAALSGTPGKAP SDEDADRVLRRMVEAVKTGAFSAYLPFNREGQPVRLG" gene 494801..495349 /locus_tag="Alide2_0473" /db_xref="GeneID:10481494" CDS 494801..495349 /locus_tag="Alide2_0473" /inference="similar to AA sequence:KEGG:Dtpsy_0436" /note="KEGG: dia:Dtpsy_0436 hemerythrin HHE cation binding domain protein" /codon_start=1 /transl_table=11 /product="hemerythrin HHE cation binding domain-containing protein" /protein_id="YP_004386408.1" /db_xref="GI:330823105" /db_xref="InterPro:IPR012312" /db_xref="GeneID:10481494" /translation="MTTRVSLPGMHTPGAGFDEPFAMLDACHDRVRRSLDLLERLRAY LQDKGCDDSARQAARDVLRYFDIAAPLHHEDEELHVFPPLLAQGGDERLAALVRQLQR DHVRMAERWAEARQPLEQLAQGALQAFAPAHETVLDRFADCYADHLRHEDDSIYPAAR ALLDMDAQQAMGREMAVRRGVR" gene complement(495539..495826) /locus_tag="Alide2_0474" /db_xref="GeneID:10481495" CDS complement(495539..495826) /locus_tag="Alide2_0474" /inference="protein motif:PFAM:PF12091" /note="PFAM: Protein of unknown function DUF3567; KEGG: ajs:Ajs_0446 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386409.1" /db_xref="GI:330823106" /db_xref="InterPro:IPR021951" /db_xref="GeneID:10481495" /translation="MQMLYDSDSFVVVHMLPDADRSGATDDTPQPPQLVRHGFEIVDK RSGKEVYLDGSWAELFQQQILAWQLNTPTQEEVEDTLDGYIGLAQNPVVVH" misc_feature complement(495542..495826) /locus_tag="Alide2_0474" /note="Protein of unknown function (DUF3567); Region: DUF3567; pfam12091" /db_xref="CDD:152526" gene complement(495960..497111) /locus_tag="Alide2_0475" /db_xref="GeneID:10481496" CDS complement(495960..497111) /locus_tag="Alide2_0475" /inference="similar to AA sequence:KEGG:Ajs_0447" /note="KEGG: ajs:Ajs_0447 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386410.1" /db_xref="GI:330823107" /db_xref="GeneID:10481496" /translation="MPCRALLLITTLVLALHWLLLADLPLGGTGQGMPRRMSFHTRMV EPPPPEPEAAPAPPPPAAPRPVRKPRPRPAPPAPEAPEPAPAAPTSPLTDESPAETAP PATEEGTVGAEADAAPEPPQAAASAAAEPTPAASATPAPQEPPAESAGVEIRPPGASG AGASTEPPPVRLPPSTRLTFDVTGEVKRFHYSASAELVWRQDGSRYEARQQIKAFLLG ARSQSSVGQITPRGLRPERFGDKARSERAAHFDFDKHEVIFSANTPRATIGDGAQDRL SVFIQLGAMLAAAPGRYPPGTQITLTTVGARNADRWTFTVDGPETLNLPVGSTPALKL QRLPREDQHYDQKAELWLGTELGYLPVRIRLSQSNGDFVDLLLSGHEAP" misc_feature complement(495978..496640) /locus_tag="Alide2_0475" /note="Protein of unknown function (DUF3108); Region: DUF3108; pfam11306" /db_xref="CDD:192738" gene 497293..498282 /locus_tag="Alide2_0476" /db_xref="GeneID:10481497" CDS 497293..498282 /locus_tag="Alide2_0476" /inference="protein motif:PFAM:PF01557" /note="PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase" /codon_start=1 /transl_table=11 /product="fumarylacetoacetate (FAA) hydrolase" /protein_id="YP_004386411.1" /db_xref="GI:330823108" /db_xref="GO:0003824" /db_xref="InterPro:IPR002529" /db_xref="GeneID:10481497" /translation="MKLATYKDGSRDGQLVVVSRDLGQAHYATGIASRLQQVLDDWNF MAPQLQDLYEQLNAGRARHAFPFDPRQCMAPLPRAYQWADGSAYINHVELVRKARNAE VPASFYTDPLMYQGGSDDFLGPCDDVAVPSEAMGIDFEAEIAVVTGDVRMGASPEQAL DGIRLVMLANDWSLRNLIPAELAKGFGFFQSKPATAFSPVAVTPDELGDAWEGGRVHL TLQSTWNGRKVGMCDAGPEMTFHFGQLIAHIAKTRNVRAGSIVGSGTVSNKDWTRGYS CIAEKRCIEAIQDGQPSTEFMQYGDTIRIEMKGRDGQSLFGAIDQQIVPISEG" misc_feature 497311..498267 /locus_tag="Alide2_0476" /note="2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179" /db_xref="CDD:30528" misc_feature 497536..498264 /locus_tag="Alide2_0476" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 498439..500643 /locus_tag="Alide2_0477" /db_xref="GeneID:10481498" CDS 498439..500643 /locus_tag="Alide2_0477" /inference="protein motif:PFAM:PF00515" /note="KEGG: cph:Cpha266_1840 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat" /codon_start=1 /transl_table=11 /product="tetratricopeptide TPR_1 repeat-containing protein" /protein_id="YP_004386412.1" /db_xref="GI:330823109" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013105" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10481498" /translation="MTDSKKPNFNIRFQSPAVPAPGFPSAGVSFRVPTMQPPEPALPD DAQACNTQGNTWLQANRVADAIKAYDRAIALQADYLDPHFNRGNALLRLGRKAEALTA FERAIALAPGLALAHYNRATVLEGMGREQESMDSYRQVLCIEPGHVQAQFNLGCLHLR RKAYGEAVACMDRVLALEPRLAQAHNNRGNALLKSRHLLEAVASFDQALALQPQYADA LVNRGNARLQRKEHAQAFADLDRAIRLNPDQAQSRQLMGTLLRDSKRHEEALQEFQRA WRCNPGQPGLLTDILGAKTAVCDWHNIGAGIDRLGQAVAQRQPGVSPFSVAVLCDDPA LQLQAARNFVAADYPENPLLGPVAPRADGGRIRVGYYSADFHHHATAILMAELFELHD RERFEWFAFSFGPDSQDAMHVRVRQAFDHFLDVRDRSDEAVARLSRELGIDIAVDLKG FTQDTRFGIFSYRCAPVQVSYLGYPGTTGADYIDYAIADKVVLPPQARCHFSEKVVYL PHSYQVNDSKRRIADRAFTREALGLPATGFVFCCFNNNYKILPQMLDGWGRILHAVED SVLWLLEDNPAVSRNLLREAQARGIAPQRLVFAQRMPLDEHLARHRLADLFLDTLPCN AHTTASDALWAGLPVLTCAGQSFASRVAASLLHAVGLPELVTETQGAYEARAIALARD AGQLDALRSRLHAQAPASPLFDARRFARDLEAAYVVMHARAVQGLPPEAFKV" misc_feature 498577..498873 /locus_tag="Alide2_0477" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(498577..498582,498586..498591,498598..498603, 498688..498693,498697..498702,498709..498714, 498790..498795,498802..498807,498814..498819) /locus_tag="Alide2_0477" /note="binding surface" /db_xref="CDD:29151" misc_feature order(498595..498597,498631..498633,498643..498645, 498652..498654,498697..498699,498733..498735, 498745..498747,498754..498756,498799..498801, 498835..498837,498847..498849,498856..498858) /locus_tag="Alide2_0477" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 498883..499182 /locus_tag="Alide2_0477" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(498883..498888,498892..498897,498904..498909, 498994..498999,499003..499008,499015..499020, 499096..499101,499108..499113,499120..499125) /locus_tag="Alide2_0477" /note="binding surface" /db_xref="CDD:29151" misc_feature order(498901..498903,498937..498939,498949..498951, 498958..498960,499003..499005,499039..499041, 499051..499053,499060..499062,499105..499107, 499141..499143,499153..499155,499162..499164) /locus_tag="Alide2_0477" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 499036..500604 /locus_tag="Alide2_0477" /note="Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]; Region: Spy; COG3914" /db_xref="CDD:33700" misc_feature <499978..500586 /locus_tag="Alide2_0477" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" gene complement(500704..502779) /locus_tag="Alide2_0478" /db_xref="GeneID:10481499" CDS complement(500704..502779) /locus_tag="Alide2_0478" /EC_number="1.7.2.3" /inference="protein motif:PRIAM:1.7.2.3" /note="PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain" /codon_start=1 /transl_table=11 /product="Trimethylamine-N-oxide reductase (cytochrome c)" /protein_id="YP_004386413.1" /db_xref="GI:330823110" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:10481499" /translation="MNAPTSPTAAVPAPQLVRGACPHDCPDTCALLTTVENGRAVRVQ GNPAHAQTGGVLCAKVSRYAERTHHANRILTPLKRTGPKGSGQFAPVPWDEALDDIAR RLGAIAACDAQAIVPYSYAGTMGLVQGESMDRRFFHRLGASLLHRSICSTAGGEGLVH TLGGKVGMKVEFFAEARLILIWGSNSIGSNLHFWRIAQQAKRNGARLVCIDPRRTETA EKCHEHLQLRPGTDAALALALMHELIENDWLDHDYITRHTLGWPQLRERALTFPPARA AEVCGLPVEQIRRLARDYGTTKPAAIRLNYGVQRVHGGGNAVRAIACLPALTGAWRQR AGGVLLSSSGAFPVDRARLQRPELLAGRAPRTINMVTIGDDLLRESSPAFGPKIEALV VYNSNPVAVAPDSPKVVRGFAREDLFTVVLEHFQTDTADYADYILPATTQLEHWDVHL AYGHTDVLLNRPAIAPQGQARSNAQIFRDLAARMGFADPCFADTDEQLCRQAYGEAVD FPRLLADGFAPLPVPDAPFAEGGFPTPSGRCEFYSERLARQGLDPLPGHVPNHEAAGS SAAYPLAMISPPARNFLNSTFVSLQSLRDIEGRPLLELHPDDAAARGIADGALVRVFN DRGSYECHATLNGRARPGVVNGLGIWWRKLGHGGTNVNEITSQALTDMGAGPTFYDCA VQVEALAAS" misc_feature complement(501115..502728) /locus_tag="Alide2_0478" /note="The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These...; Region: MopB_3; cd02766" /db_xref="CDD:73330" misc_feature complement(500713..502722) /locus_tag="Alide2_0478" /note="Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]; Region: BisC; COG0243" /db_xref="CDD:30592" misc_feature complement(order(502609..502611,502693..502695, 502705..502707,502717..502719)) /locus_tag="Alide2_0478" /note="putative [4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:73330" misc_feature complement(order(501445..501447,501460..501465, 501499..501501,501508..501516,501589..501597, 501625..501627,501751..501753,501856..501867, 502084..502086,502144..502152,502213..502218, 502225..502227,502231..502236,502327..502335, 502339..502341,502603..502605)) /locus_tag="Alide2_0478" /note="putative molybdopterin cofactor binding site [chemical binding]; other site" /db_xref="CDD:73330" misc_feature complement(500725..501072) /locus_tag="Alide2_0478" /note="Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum-; Region: MopB_CT; cl09929" /db_xref="CDD:158784" misc_feature complement(order(500743..500748,500794..500796, 500836..500838,501025..501036,501040..501045)) /locus_tag="Alide2_0478" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:30307" gene complement(502897..503928) /locus_tag="Alide2_0479" /db_xref="GeneID:10481500" CDS complement(502897..503928) /locus_tag="Alide2_0479" /inference="similar to AA sequence:KEGG:Veis_1579" /note="KEGG: vei:Veis_1579 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386414.1" /db_xref="GI:330823111" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481500" /translation="MNHCDSAPARVQASRRDVLRLGFGLAAAAGLPGAALAQGGAPWP SKPIRIICGQATGSSNDATARAVGEFITARLGAPVVIENKPGAVGTIAGDTVVRSAPD GYTLLCVLHSQLAQAPVLLSKVPFDPDNDLIPIGAFGTGSSPAVVRSGLPVNSMRELI EYAKKTPVSVGNYGIGSGWQIMVTQLVKDTGAQFNIVNYRGTGPMVLDLMAGNIDVGA GSLAGLAPGLQNGKFRAIHLISGSSRNPALPNLQTWEEAGFTGEAYTATQESNMFLAP KGTPHEVIERLAAVIDASYRESPRIKTLMEQLGQVRPPWTGEDLRQFVRTTWPAYRRL TKALNLQVG" misc_feature complement(502906..503802) /locus_tag="Alide2_0479" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(502909..503739) /locus_tag="Alide2_0479" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(503969..504877) /locus_tag="Alide2_0480" /db_xref="GeneID:10481501" CDS complement(503969..504877) /locus_tag="Alide2_0480" /EC_number="4.1.3.34" /inference="protein motif:PRIAM:4.1.3.34" /note="KEGG: vei:Veis_1580 citryl-CoA lyase; PFAM: Aldehyde-lyase domain" /codon_start=1 /transl_table=11 /product="Citryl-CoA lyase" /protein_id="YP_004386415.1" /db_xref="GI:330823112" /db_xref="InterPro:IPR005000" /db_xref="GeneID:10481501" /translation="MNRPRRLRRCQLSVPGSSEKMMEKAAGLGVDYVFLDLEDAVAPA EKRPARQKIVRALNTLPWGRTVRCVRVNDLTTEYAYEDIIEVVEGARGNLDVIMLPKA LSAADIQFVDKLLTMMEKKLGLTKRIGLDVLIEEVEGLQQVDAIAAASPRLECLIFGM GDYSASQGVSLKDIGGASGYPGDLWHYQRQKITVAARCNRIDAVDGPYANFKDPAAYE EECRRAMTLGMVGKWAIHPSQVEIAQRVFSPRAEDVVRARRMMAAYDEALAQGLGAVQ FEGKMIDIASVRIVRNLVERADLIGI" misc_feature complement(503972..504844) /locus_tag="Alide2_0480" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(504893..506125) /locus_tag="Alide2_0481" /db_xref="GeneID:10481502" CDS complement(504893..506125) /locus_tag="Alide2_0481" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: vei:Veis_1581 formyl-CoA transferase; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386416.1" /db_xref="GI:330823113" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481502" /translation="MTAPGTPAFGALQGLRVLDLTQMLAGPYATMLLADQGADVIKVE PPGGDATRRHGPFLPGARPFDEGGFGAYFGSVNRNKRSIVVDLKSEAGKAQLIAMVRQ ADVLVENYRAGVMEGLGLSYETLAAHNPRLVYAALRGFGDPRSGETPYTHWPAYDPVA QAMGGIMGVTGPEVGGAPTKIGPGVGDLLPAMYLAYAVAAACWSVQRTGQGQFVDVAM ADAVLALCERIVYQYSAAGVDSRPDGNGHPLLCPFGIFPASDGYVSLGVPNDRFWEPL ARIMGRADLAADPRCASNEARVRHRAFVEAEVGAWTRRHTQAELVRLLGGRIPFGPVL YAQDIFHDPHFQARGMLVPTEQPGAERPLTIAGTPIHMGRTPGGVHRRAPLVDEHAGE ILREFGLQPAPTSPQPSP" misc_feature complement(504914..506110) /locus_tag="Alide2_0481" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(506122..506625) /locus_tag="Alide2_0482" /db_xref="GeneID:10481503" CDS complement(506122..506625) /locus_tag="Alide2_0482" /inference="similar to AA sequence:KEGG:RALTA_B1741" /note="KEGG: cti:RALTA_B1741 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386417.1" /db_xref="GI:330823114" /db_xref="GeneID:10481503" /translation="MTNRAALTSPDNYFEDFPVGRVIRHARGKTVTEMDNVLLTNLVM NTAEGHFNEDRMRQAAPGAIFSQRVVFGGINLSMVIGLASQDTAEQCVREVGLTAIKL SHPVFHGDTLYAYSEVLQADEEPGGATGRVRFRHYGVNQDRKLCVQAERTVILRRRPD PAAGATA" misc_feature complement(506149..506592) /locus_tag="Alide2_0482" /note="FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal...; Region: FkbR2; cd03451" /db_xref="CDD:48046" misc_feature complement(order(506407..506412,506419..506421, 506476..506478,506485..506487,506491..506493, 506506..506508)) /locus_tag="Alide2_0482" /note="putative active site [active]" /db_xref="CDD:48046" misc_feature complement(order(506410..506412,506476..506478, 506485..506487,506491..506493)) /locus_tag="Alide2_0482" /note="putative catalytic site [active]" /db_xref="CDD:48046" gene complement(506622..507872) /locus_tag="Alide2_0483" /db_xref="GeneID:10481504" CDS complement(506622..507872) /locus_tag="Alide2_0483" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: cti:RALTA_B1742 putative acyl CoA dehydrogenase oxidoreductase protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004386418.1" /db_xref="GI:330823115" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481504" /translation="MNTTPTIDGKGYMTEERIMIRDAARDFTMNEVLPVANQLDGPDG EIPMELRRKMADMGYFGITIPEEYGGMGLGTFEYCLICEQLARGWMSVASLVARAQGG FIKNEMPEEMRRKYLPRVVRGEFLNASALSEPDTGSDLASISCRAELVGDEWVLNGNK YWCTFADGADYINVFARTAKPTHPKKRWEGISCFLIEKKRGEFPPGMVGQPIPKIGYF GWKTFELALNDLRVPRENLIGAPGQAFLIMAKGLETARAHTAARAIGLAQGALEDAIA YARERKQFGMPIAEYQAIRFKIATMATEVEAARQLLHYVCSAIDSGRRCDTEASMVKL FATEMAERVTSEALQIFGGAGYTKLFAVERHWRDARLTKIFEGTSEIQQRIIANNLLG KSVLEDMIASRAFESAAGARTEAA" misc_feature complement(506694..507836) /locus_tag="Alide2_0483" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(506697..507830) /locus_tag="Alide2_0483" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(506733..506735,506739..506741, 506745..506753,507381..507383,507387..507389, 507480..507482,507486..507488,507564..507566)) /locus_tag="Alide2_0483" /note="active site" /db_xref="CDD:173838" gene complement(507877..508380) /locus_tag="Alide2_0484" /db_xref="GeneID:10481505" CDS complement(507877..508380) /locus_tag="Alide2_0484" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC-like dehydratase; KEGG: cti:RALTA_B1743 hypothetical protein" /codon_start=1 /transl_table=11 /product="MaoC domain-containing protein dehydratase" /protein_id="YP_004386419.1" /db_xref="GI:330823116" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10481505" /translation="MTTTTDDIVDFLERSAAEWPRGNRFEDFAIGRRFRHHWGRTVTE ADNTLFSTLTLAYNPVYTNAHLARAEGLPGSPVNPLLVFNVVFGLSVEDLSEGGGPFL GVDDLEYLQPVQPGETLYAESEVIQARLADKRPGYGIVQWHTVGRNAAGAPVIAFKRA NLVRTRS" misc_feature complement(507883..508317) /locus_tag="Alide2_0484" /note="FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal...; Region: FkbR2; cd03451" /db_xref="CDD:48046" misc_feature complement(order(508141..508146,508153..508155, 508198..508200,508207..508209,508213..508215, 508228..508230)) /locus_tag="Alide2_0484" /note="putative active site [active]" /db_xref="CDD:48046" misc_feature complement(order(508144..508146,508198..508200, 508207..508209,508213..508215)) /locus_tag="Alide2_0484" /note="putative catalytic site [active]" /db_xref="CDD:48046" gene complement(508377..509756) /locus_tag="Alide2_0485" /db_xref="GeneID:10481506" CDS complement(508377..509756) /locus_tag="Alide2_0485" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD; KEGG: vei:Veis_1585 MmgE/PrpD family protein" /codon_start=1 /transl_table=11 /product="MmgE/PrpD family protein" /protein_id="YP_004386420.1" /db_xref="GI:330823117" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10481506" /translation="MTTEAAALRAVQGTAARPPGELTDTLAGLMCEGGADAVPDVARE CARHALLDWACVALAGMREPAVRIVARLHDPQWEPSVGLVPFTGPSAPWAVLVNGTAG HALDYDDVNSRMHGHPSVPVVPTALAASALRGCSGRQLLDAVVLGHEAEALVGEQFGG AHYANGFHATGTIGTFGAAAAAAHVLGLTDAQARHALGLAATQAAGLKCMFGTMAKPL HAGKAAMNGLWAARLAQQGFTAAADGIEGAQGFAATQCTGLREAPVVSERWAVQDTLY KYHAACYLTHSAIEALRALLARTRLAPEDVERLDVHVPPGHDSVCNIAAPATGLQVKF SLRHLMAMVAHGHDTADLDAYTDALACDADLVRWRERVQVRFEHLPSAKGARVELHAR GGAVHAHYADVGVPREDLPAQWRALVAKGRAVTRGVLAPGRFDALVRCIETLERQPDL LSLHEAITT" misc_feature complement(508422..509681) /locus_tag="Alide2_0485" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene 509962..510837 /locus_tag="Alide2_0486" /db_xref="GeneID:10481507" CDS 509962..510837 /locus_tag="Alide2_0486" /EC_number="4.1.3.34" /inference="protein motif:PRIAM:4.1.3.34" /note="KEGG: xau:Xaut_1974 citryl-CoA lyase; PFAM: Aldehyde-lyase domain" /codon_start=1 /transl_table=11 /product="Citryl-CoA lyase" /protein_id="YP_004386421.1" /db_xref="GI:330823118" /db_xref="InterPro:IPR005000" /db_xref="GeneID:10481507" /translation="MTQATSPIGAMRSVLYMPGDKERALQKIPGLAADVVVLDLEDAV APEKKAEARERIVQTLAEPANAARALVVRTNGVDTPEFAADLQAVARARPAAVLIPKY ETLEALQALRDGLRAAGAPGLPVWAMVETPLGIADIARLADANQAPGEAYPLTTLVIG TNDIARLTGTRMDDGRRHMLAWLSTVLIHAKARGLRVLDGVYNDFSDAEGFAREAAQA RAMGFDGKTLIHPAQIAPAHVAFAPTPEERAWAEKVVQAFALPENQGSGAIKLDGGMV ELLHLEIARRWLAAA" misc_feature 509998..510834 /locus_tag="Alide2_0486" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene 510844..511602 /locus_tag="Alide2_0487" /db_xref="GeneID:10481508" CDS 510844..511602 /locus_tag="Alide2_0487" /inference="protein motif:PFAM:PF09339" /note="PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; KEGG: rcu:RCOM_0002820 Transcriptional regulator kdgR, putative" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004386422.1" /db_xref="GI:330823119" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10481508" /translation="MASVPDANVKSATRVLELLEFFAEHRRPMSTADVVNELGYPQSS STVLLQTLMRLRYLDYDRKSRKYFPTVRVALLGSWITENLYSERSLSKIVNDLHARTS ATVILGLQNDIYVQYINVCQTPQRRSQLKWYLKPGSLRPLARSSVGKAVLSSKPDAEL IYLLRRINASETRPENRVSEADLLEEMDRIRETGYSLTTGTVNPQAGVVACLIPSHPQ QPVMALGIGAENAELLRNKDRYLHLLREALEPFC" misc_feature 510871..511584 /locus_tag="Alide2_0487" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 510874..511029 /locus_tag="Alide2_0487" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 511252..511584 /locus_tag="Alide2_0487" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 511704..512909 /locus_tag="Alide2_0488" /db_xref="GeneID:10481509" CDS 511704..512909 /locus_tag="Alide2_0488" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: dia:Dtpsy_0444 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004386423.1" /db_xref="GI:330823120" /db_xref="GO:0016787" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="GeneID:10481509" /translation="MKVIDSIAAAAPAIAAVRRDIHAHPELCFKEERTADLIAAKLTE WGIPIHRGLGTTGVVGIVHGRDGGACGRAVGLRADIDALPMQEFNTFAHASKHAGKMH ACGHDGHTAMLLAAAQHLAGHRDFDGTVYLIFQPAEEGGGGAREMIKDGLFERFPMQA VFGMHNWPGMPAGSFAVSPGPVMASSNEFKITIHGKGSHGAMPHLGIDPVPVACQMVQ AFQTIISRNKKPIEAGVISVTMIRAGEATNVVPDFCVLQGTVRTFSIELLDMIERRMR QVAEHTCAAFEATCEFEFVRNYPPTVNSAAEAEFARRVMAGIVGEDKVLPQEPTGGAE DFSFMLQAKPGAYVFIANGDGTHRDMGHGAGPCTLHNPSYDFNDALIPLGGTYWVELA RQWLANPTA" misc_feature 511752..512897 /locus_tag="Alide2_0488" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature 511755..512885 /locus_tag="Alide2_0488" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature order(512013..512015,512019..512021,512118..512120, 512196..512198,512811..512813) /locus_tag="Alide2_0488" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature order(512265..512267,512331..512336,512346..512348, 512355..512357,512364..512366,512415..512435, 512445..512450,512454..512456,512472..512480) /locus_tag="Alide2_0488" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene 512978..513235 /locus_tag="Alide2_0489" /db_xref="GeneID:10481510" CDS 512978..513235 /locus_tag="Alide2_0489" /inference="protein motif:PFAM:PF00887" /note="PFAM: Acyl-CoA-binding protein, ACBP; KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP" /codon_start=1 /transl_table=11 /product="acyl-coA-binding protein ACBP" /protein_id="YP_004386424.1" /db_xref="GI:330823121" /db_xref="GO:0000062" /db_xref="InterPro:IPR000582" /db_xref="GeneID:10481510" /translation="MSDLNAAFEAAVANSKLLTERPDNPTLLKIYALYKQATAGDNAE KKPSFSDIVGRAKWDAWEKLKGTASDAAKQQYIDLIESLRG" misc_feature 512987..513226 /locus_tag="Alide2_0489" /note="Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a...; Region: ACBP; cl00221" /db_xref="CDD:193717" misc_feature order(513011..513013,513020..513025,513029..513031, 513038..513043,513047..513049,513056..513061, 513065..513070,513077..513082,513131..513136, 513143..513148,513203..513205) /locus_tag="Alide2_0489" /note="acyl-CoA binding pocket [chemical binding]; other site" /db_xref="CDD:29555" misc_feature order(513023..513025,513068..513070,513077..513082, 513146..513148,513203..513205) /locus_tag="Alide2_0489" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:29555" gene complement(513238..514341) /locus_tag="Alide2_0490" /db_xref="GeneID:10481511" CDS complement(513238..514341) /locus_tag="Alide2_0490" /inference="protein motif:PFAM:PF10023" /note="PFAM: aminopeptidase; KEGG: dia:Dtpsy_0447 putative zinc protease protein" /codon_start=1 /transl_table=11 /product="aminopeptidase" /protein_id="YP_004386425.1" /db_xref="GI:330823122" /db_xref="InterPro:IPR014553" /db_xref="GeneID:10481511" /translation="MQRIASSLLIPLLALLLSGCAHSGGTPGYYWQSLRGHLALLQAA RPVQEWIDSPDTPAPLRARLELARKARAFSIIDLALPDNASYRRYARLDRRAAVWNVV AAGPYSLELHRWCFPVTGCIGYRGYFDEADARAEAARLAATGLEVNVYGVPAYSTLCY SNWLGGDPLLSTFIAWPEGDFVRLLFHELAHQQVYAEGDTAFNESYATAVERLGVQRW LERHATPAVRAQFAASEQRRAQFRALTRATRERLAAIYEQKSDTTPDHTALAAMKSEA MLQFHANYALLRSRWLAAHTPPAQLAPLDQWVREANNASFAAQGAYDDLVPAFVALFE REGRDWPRFHAAVRALAKMPQPGREEALKALAG" sig_peptide complement(514270..514341) /locus_tag="Alide2_0490" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 24" misc_feature complement(513253..514287) /locus_tag="Alide2_0490" /note="Predicted aminopeptidase (DUF2265); Region: DUF2265; cl01778" /db_xref="CDD:154584" gene 514348..515007 /locus_tag="Alide2_0491" /db_xref="GeneID:10481512" CDS 514348..515007 /locus_tag="Alide2_0491" /EC_number="3.2.2.20" /inference="protein motif:PRIAM:3.2.2.20" /note="KEGG: ajs:Ajs_0457 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase" /codon_start=1 /transl_table=11 /product="DNA-3-methyladenine glycosylase I" /protein_id="YP_004386426.1" /db_xref="GI:330823123" /db_xref="InterPro:IPR005019" /db_xref="GeneID:10481512" /translation="MQNTAMPDTTDTGLFTDDGGHARCFWCRASPLYRHYHDHEWGFP VADERRLFEKLCLEGFQAGLSWITILNKREAFRAAMANFEAEELARFGPAEVERLMGI AAIVRHRGKIESAINNARRVLELRGEFGSLAAYVWRYAPQAAQDRPGRMTLEAVRALT TSAASAALSKDLKKRGFSFVGPTTMYAFMQAMGLVNDHIEGCGARAAAHAARAAFAPP Q" misc_feature 514423..514953 /locus_tag="Alide2_0491" /note="Methyladenine glycosylase; Region: Adenine_glyco; cl01059" /db_xref="CDD:194022" gene complement(515058..515219) /locus_tag="Alide2_0492" /db_xref="GeneID:10481513" CDS complement(515058..515219) /locus_tag="Alide2_0492" /inference="similar to AA sequence:KEGG:Dtpsy_0450" /note="KEGG: dia:Dtpsy_0450 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386427.1" /db_xref="GI:330823124" /db_xref="GeneID:10481513" /translation="MGNKIVTEADRKRTPRPTPMPGMPVATHGRGQRVSLERGTATRS KKNPGKRHG" gene 515500..516798 /locus_tag="Alide2_0493" /db_xref="GeneID:10481514" CDS 515500..516798 /locus_tag="Alide2_0493" /EC_number="2.1.1.79" /inference="protein motif:PRIAM:2.1.1.79" /note="KEGG: ajs:Ajs_0460 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase" /codon_start=1 /transl_table=11 /product="Cyclopropane-fatty-acyl-phospholipid synthase" /protein_id="YP_004386428.1" /db_xref="GI:330823125" /db_xref="InterPro:IPR003333" /db_xref="GeneID:10481514" /translation="MKHLLNSLESSLAQSPVGIAVELPGGLRLGNANADLRLRFRDRM AVVALAMGEIGNVGAAIVEGRVALEGSMRQLMAAAAAMLRSDPARDEQVAWWRRVLLR ARSMAAHTRARDAQHIQYHYDLSDDFYALWLDPRRVYSCAYFRADGMTLAQAQEAKLD HICRKLMLRPGERFLDIGAGWGGLLLWAAEHYGVDATGITLSRNQHAHVQRLIEERGL QGRVRMQLLDYRVLQVPEPFDKIASVGMFEHVGHAQMGHYFATVHRLLRPGGLLMNHG ITAGGLDNAAGLGAGMGDFIERYIFPGGELMHVSRALQEMARAGLEMVDTENLRPHYA RTLWAWSDRLETRLDEARRILVDQHGQEQGEKALRAYRLYLAGCALAFEHGWVALHQV LAARPTGEVAAGALAGAQSDYPFNRAYMYEDRAAAHAAAS" misc_feature 515824..516675 /locus_tag="Alide2_0493" /note="Mycolic acid cyclopropane synthetase; Region: CMAS; pfam02353" /db_xref="CDD:145480" misc_feature 516016..516318 /locus_tag="Alide2_0493" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(516028..516048,516097..516102,516172..516180, 516229..516231) /locus_tag="Alide2_0493" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 516820..517140 /locus_tag="Alide2_0494" /db_xref="GeneID:10481515" CDS 516820..517140 /locus_tag="Alide2_0494" /inference="protein motif:PFAM:PF08895" /note="PFAM: Protein of unknown function DUF1840; KEGG: dia:Dtpsy_0452 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386429.1" /db_xref="GI:330823126" /db_xref="InterPro:IPR014991" /db_xref="GeneID:10481515" /translation="MLFKFKSRATADLIMLEPNGRQLLEIIGKTPDPHGIVTAAQIPA AIAALEAAVAADEANAGAPAEEAEGADGEQQPPRDTVRLRQRAAPFIDMLRRSAAEDH DVVW" misc_feature 516820..517137 /locus_tag="Alide2_0494" /note="Domain of unknown function (DUF1840); Region: DUF1840; pfam08895" /db_xref="CDD:192175" gene complement(517163..518179) /locus_tag="Alide2_0495" /db_xref="GeneID:10481516" CDS complement(517163..518179) /locus_tag="Alide2_0495" /inference="similar to AA sequence:KEGG:Ajs_0462" /note="KEGG: ajs:Ajs_0462 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386430.1" /db_xref="GI:330823127" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481516" /translation="MHIDTPRRQSLRAIAAAFALGLGAAGAAQAQATWPTKPVRIVVP FAAGGTTDILARAIAPELGKAFGQQFIVDNRGGAGGNIGAELVAKSAGDGYTLLMGTV GTHGINRALYARLPYDPIKDFAPITLVASVPNVMVMNTEKARALGIGNVQDFIRYAKA NPGKLNMASSGNGTSIHLAGELFKTMTGTFMLHMPYRGSAPALLDMVGGNMDVMFDNL PSSMAHIKAGKLKALAVTSAQRSAALPDVPTVEEAGGPALKGFEASSWFGLLAPAGTP PDVVQRIQQEVAKALASPAVKERLLAQGAIPGGNTPAEFAGLIDSEHRKWAQVVKASG AKVD" sig_peptide complement(518087..518179) /locus_tag="Alide2_0495" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.874 at residue 31" misc_feature complement(517178..518083) /locus_tag="Alide2_0495" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(517175..518017) /locus_tag="Alide2_0495" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(518322..519311) /locus_tag="Alide2_0496" /db_xref="GeneID:10481517" CDS complement(518322..519311) /locus_tag="Alide2_0496" /inference="similar to AA sequence:KEGG:Vapar_5015" /note="KEGG: vap:Vapar_5015 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386431.1" /db_xref="GI:330823128" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481517" /translation="MNHPFKLVLGAAAILAAFGVCAQTYPAAGKTITIVVPFTAGGPT DRVARDLAEALRKPLGGATIVVDNTAGAGSSIGMAKVARAAPDGYTLLLNHIGMATVP SMYRKLPFNVENDFEYLGIINDVPMTLIGKPTLPANNYKELTAWIAANKGKVNLANAG LGSASHLCGLMFQSALQTEMTSVPYKGAAPAIADLMGNQVDLLCDQTTNTTSQIEAKK VKAYAVTTPKRLATPALKGLPTLQELGLKDFQVTIWHGLYAPKGTPAAVVKTINDALK VALKDPQFVKNEEALGAVVTTDKRLEPAEHKKFVQAETAKWGAVIKAAGSYAD" misc_feature complement(518328..519311) /locus_tag="Alide2_0496" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" sig_peptide complement(519243..519311) /locus_tag="Alide2_0496" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.989 at residue 23" misc_feature complement(518337..519173) /locus_tag="Alide2_0496" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(519438..520685) /locus_tag="Alide2_0497" /db_xref="GeneID:10481518" CDS complement(519438..520685) /locus_tag="Alide2_0497" /inference="protein motif:PFAM:PF00501" /note="PFAM: AMP-dependent synthetase/ligase; KEGG: dia:Dtpsy_0455 putative phenylacetate-CoA ligase" /codon_start=1 /transl_table=11 /product="AMP-dependent synthetase and ligase" /protein_id="YP_004386432.1" /db_xref="GI:330823129" /db_xref="GO:0003824" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10481518" /translation="MNKFYDALETRSSAEREADQMAALARQIAHAQQAAPAFAEILAG IDAGSIASRGALAQLPVTRKYELQQRQQAGRAESPFGGFAGMGFGSAMPRVFASPGPI YEPEGARRDYWRMARALYAAGFRAGDLVHNCFSYHFVPAGSMMETAAHALGCTVFAGG TGQTEQQVQAMADLRPAGYVGTPSFLKIILEKAAEMAVELPSVTKALFSAEAFPPSLR DWFAERGVTGFQCYGTADLGLIAYETEAREGLVLDEGVIVEIVRPGTGDPVPEGEVGE LVVTTLNPDYPLIRFGTGDLSAVLPGACPTGRTNTRIKGWLGRADQTTKVRGMFVQPG QVAAVVKRFPQVQRARLVVSGEMANDQMVLQVETTETAAGLAQLLAEALREVTKLRGE VQMLPPGSLPNDGKVIEDARSYR" misc_feature complement(519588..520559) /locus_tag="Alide2_0497" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(520776..521618) /locus_tag="Alide2_0498" /db_xref="GeneID:10481519" CDS complement(520776..521618) /locus_tag="Alide2_0498" /inference="protein motif:PFAM:PF00005" /note="KEGG: ctt:CtCNB1_4329 high-affinity branched-chain amino acid transport ATP-binding protein LivF; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="ABC transporter-like protein" /protein_id="YP_004386433.1" /db_xref="GI:330823130" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481519" /translation="MSAASQPTAAPAASATPLVEVNGIEVIYNHVILVLKGVSLKVPH HSIVALLGGNGAGKTTTLRAISNLLKGERGEVTKGGITLEGERIENLSPADLVKRGVV QVMEGRHCFAHLTIEENLLTGAYTRSDRGEIAANLEKVYSYFPRLKTRRTSQAAYTSG GEQQMCAIGRAIMSNPRMVLLDEPSMGLAPQIVDEVFHIVKDLNSKEKVTFLLAEQNT NMALKYSDYGYIMESGRIVMDGPAQELANNEDVKEFYLGMGGGERKSFKDVKSYKRRK RWLA" misc_feature complement(520845..521567) /locus_tag="Alide2_0498" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature complement(520875..521561) /locus_tag="Alide2_0498" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature complement(521442..521465) /locus_tag="Alide2_0498" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature complement(order(520971..520973,521070..521075, 521301..521303,521439..521447,521451..521456)) /locus_tag="Alide2_0498" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature complement(521301..521312) /locus_tag="Alide2_0498" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature complement(521118..521147) /locus_tag="Alide2_0498" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature complement(521070..521087) /locus_tag="Alide2_0498" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature complement(521052..521063) /locus_tag="Alide2_0498" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature complement(520965..520985) /locus_tag="Alide2_0498" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene complement(521758..523071) /locus_tag="Alide2_0499" /db_xref="GeneID:10481520" CDS complement(521758..523071) /locus_tag="Alide2_0499" /inference="similar to AA sequence:KEGG:Daci_1155" /note="KEGG: dac:Daci_1155 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386434.1" /db_xref="GI:330823131" /db_xref="GeneID:10481520" /translation="MMFKKAAIAAATVAAGMGALLGSPAAQAQEQFQPLLVYRTGQFA PLGIPWADGKQDYLKLVNARGGINGVKIAFEECETAYDTAKGVECYERLKSRPGGTAS FDTQSTGITYAVSDKAPGDKATIVTAGYGLSQSADGRVFEWNFPLLGTYWTAADSIIQ DILKKEKGSLKGKKIALVYHDSPYGKEPIPLLEKRAAKEGFELLKLPVTAPGVEQKST WLQVRQQRPDYVLLWSAGVMTPTAVREAQATGYAREKIYGIWWAGSDHDVKDIGAGAK GYNTVTIHNTAEHDKVHDEVKAQLYDKGQGTAKDAKELGAMAHTRGMVISMLQVEAIR TAQEKFGKGKVMTSEQVRWGLENLNLTQERLNELGFGKILKPIKTSCENHMGTDWSRI AQWDGAKWVAVSDWYQADKSLIDPLVKEYGEKYAKEKNLKVRSCS" sig_peptide complement(522985..523071) /locus_tag="Alide2_0499" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 29" misc_feature complement(521911..522972) /locus_tag="Alide2_0499" /note="Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_ligand_binding_like_1; cd06334" /db_xref="CDD:107329" misc_feature complement(521863..522957) /locus_tag="Alide2_0499" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(order(522292..522294,522367..522369, 522520..522522,522679..522687,522748..522756)) /locus_tag="Alide2_0499" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107329" gene complement(523130..524194) /locus_tag="Alide2_0500" /db_xref="GeneID:10481521" CDS complement(523130..524194) /locus_tag="Alide2_0500" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: ctt:CtCNB1_4327 membrane protein" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386435.1" /db_xref="GI:330823132" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10481521" /translation="MFYRENGQFKTSYSADQQIFAVTQDRIAIGLILAVAFVVVPMVA SDYFFQAILIPLLIMSLGALGLNILVGYCGQISLGTAAFMAVGAYAAYNLQARFDGMP LLLALIGGGLIAMVFGVVFGLPSLRIRGLYLAVATLAAQFFVDWITTRADWVTNNSSS GSVSAKALAIAGWQIDTPMEKYLLCLGILCVLGLAAKNLVRSSVGREWMAMRDMDVAA AVIGIRPVYAKLSAFAVSSFIVGIAGALWGFVHLGAWEPAAFSLDRSLQLLFMVIIGG LGSIMGSIFGAAFFILLPLLLNQVPHWLGLPISTATATYLEHMIFGALIVFFLIVEPH GLAKLWSTARQKLRVWPFPH" misc_feature complement(523184..524026) /locus_tag="Alide2_0500" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature complement(523493..523549) /locus_tag="Alide2_0500" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene complement(524216..525145) /locus_tag="Alide2_0501" /db_xref="GeneID:10481522" CDS complement(524216..525145) /locus_tag="Alide2_0501" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: ctt:CtCNB1_4326 high-affinity branched-chain amino acidtransport system permease protein LivH" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386436.1" /db_xref="GI:330823133" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10481522" /translation="MGFFLETLIGGLMVGTLYALIAIGFVLIFKASGVFNFAQGAMVL FSALAMARFAEWIPGWLGMTPGLVGNLLAIVVTLALMVVVAWVIERFALRHLVNQEPI ALLMATLGIAYLLDGLGPMVFGSAVYSINVGMPKDPVFVMDGLIEGGVMISLEDLYAA CIAALLVVCLSLFFQKTKTGRALRAVADDHQAAQSIGIPLSRIWVIVWSVAGGVALVV GIIWGSKLGVQYSLSLVALKALPVVILGGLTSLPGAIIGGLIIGVGEKLSEVYIGPMV GGGIETWFAYGLALCFLLVRPQGLFGDKIIDRV" misc_feature complement(524243..525115) /locus_tag="Alide2_0501" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature complement(524519..524575) /locus_tag="Alide2_0501" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene complement(525166..525951) /locus_tag="Alide2_0502" /db_xref="GeneID:10481523" CDS complement(525166..525951) /locus_tag="Alide2_0502" /EC_number="3.6.3.25" /inference="protein motif:PRIAM:3.6.3.25" /note="PFAM: ABC transporter-like; KEGG: dac:Daci_1158 ABC transporter-like protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="sulfate-transporting ATPase" /protein_id="YP_004386437.1" /db_xref="GI:330823134" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481523" /translation="MTSKKIGDVILDVKNISLRFGGVKALTDISFDVREHEIRSIIGP NGAGKSSMLNCINGVYTPQEGSITFRGKTFSHMNSRQVAEMGVARTFQNLALFKGMSV IDNIMTGRNLKIKSNLLMQALRIGPAEREEIRHREFVEHIIDFLEIQAWRKTPVGQLP YGLQKRVDLGRALAMEPQVLLLDEPMAGMNVEEKQDMCRFILDVNDEFGTTIVLIEHD MGVVMDISDRVVVLDYGKKIGDGAPDEVRDNEDVIRAYLGTAH" misc_feature complement(525175..525930) /locus_tag="Alide2_0502" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature complement(525196..525921) /locus_tag="Alide2_0502" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature complement(525802..525825) /locus_tag="Alide2_0502" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature complement(order(525301..525303,525400..525405, 525676..525678,525799..525807,525811..525816)) /locus_tag="Alide2_0502" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature complement(525676..525687) /locus_tag="Alide2_0502" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature complement(525448..525477) /locus_tag="Alide2_0502" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature complement(525400..525417) /locus_tag="Alide2_0502" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature complement(525382..525393) /locus_tag="Alide2_0502" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature complement(525295..525315) /locus_tag="Alide2_0502" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene complement(525969..527900) /locus_tag="Alide2_0503" /db_xref="GeneID:10481524" CDS complement(525969..527900) /locus_tag="Alide2_0503" /EC_number="6.2.1.3" /inference="protein motif:PRIAM:6.2.1.3" /note="KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="Long-chain-fatty-acid--CoA ligase" /protein_id="YP_004386438.1" /db_xref="GI:330823135" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10481524" /translation="MTTTFPQLLLQHAAQRPDAPALREKEYGIWQTWSWKAAAAEVRL MACGLLSLGFAKGQNLALISDNRPHVYMGFIAVQSIGGVPIPLYQDAVANEMRFVMED AEIHFAFAENQEQVDKLLEVRESVPGIAHIIYDDPRGLRNYDQPGLISTAELVARGRQ WDQAHPGVWESMLGQVSPQDVSVILYTSGTTGKPKGVCQTHASFIGAASGAAEVDKLG PQDSIISYLPPAWVGDHLFSLAQWLVAGYTINCPESASTVSIDMREIGPTYYFAPPRV FEGMLTSISIRMEDAAPFKRRMYEKAMELARRVGSDILDGKPVGALDRLKYRLADFAV YGPLRNVMGLSRIRVAYTAGAAIGPELFKFFRSIGINLKQFYGQTETCAYVCLQRDGQ VDLNSVGQAAPGIELKLADNGEVLVKGVAVLKEYYKRPDATAEVIDASGYFHTGDAGV IDANGQLRIIDRAKDVGKLRSGAMFAPNYIENKLKFFSHIKEAVCFGHDRDQVCAFIN IDFEAVGNWAERQNLPYAGYVDLASKAKVLELVADCVAQVNADLARESGMADTQVARF LVLHKELDPDDDELTRTRKVRRNFIAEKYGVLIDALYAGKGEQFIETQVKFEDGRTGT VSATLKIIDAKTYPASAAA" misc_feature complement(526083..527891) /locus_tag="Alide2_0503" /note="Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Region: FAA1; COG1022" /db_xref="CDD:31225" misc_feature complement(<527217..>527357) /locus_tag="Alide2_0503" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature complement(<526485..>526871) /locus_tag="Alide2_0503" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 528121..529812 /locus_tag="Alide2_0504" /db_xref="GeneID:10481525" CDS 528121..529812 /locus_tag="Alide2_0504" /inference="protein motif:PFAM:PF01471" /note="KEGG: dia:Dtpsy_0462 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan binding-like; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="peptidoglycan-binding domain 1 protein" /protein_id="YP_004386439.1" /db_xref="GI:330823136" /db_xref="InterPro:IPR002477" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481525" /translation="MYAAFLGLAHAPFSIAPDPRYLFMSERHREALAHLLYGLDAGGG FVLLTGEIGTGKTTVCRCFLEQIPAHCNVAYIFNPKLTVPELLRSICDEFGVVHRPAV PGAETVKDCLDPLNEFLLQQHAAGRNNVLIIDEAQNLAPDVLEQLRLLTNLETSERKL LQIILIGQPELRAMLARPELEQLAQRVIARYHLQALGPEETRQYIAHRLAVAGLQGPP PFQRRALARVHALAGGVPRRINLLCDRALLGAYAAGVREVSDAMVRKAAREVFDANAA APRPAGGRARWWAAGAGGLLGAAAVAGLGWSMGWWPQPAAVAGRPAAQAPAPQASAAP VAAAAASGASAPQAAASAPAVPLTLARFLSAQPAADTAPAWQLLAQAWQASLPADVAD PCAVLAPEGLRCWRSRRASLNLLRLLDRPALLTLQPSDAQQGARGAVLLRLDGAMATL QGVDGATLQVPVVELAPLWHGETATLWKAPANLPAGDDVAATAAGAAWLDRQLALAGA APAGSRGVSPEVRRARVHQFQLGQGLTPDGQAGPLTLMLLNRAAGVQEPRLRGGA" misc_feature 528121..528930 /locus_tag="Alide2_0504" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 528121..528918 /locus_tag="Alide2_0504" /note="Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]; Region: ExeA; COG3267" /db_xref="CDD:33078" gene 529817..530521 /locus_tag="Alide2_0505" /db_xref="GeneID:10481526" CDS 529817..530521 /locus_tag="Alide2_0505" /inference="similar to AA sequence:KEGG:Ajs_0472" /note="KEGG: ajs:Ajs_0472 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386440.1" /db_xref="GI:330823137" /db_xref="GeneID:10481526" /translation="MSYILDALRRAQAERGRGSVPGLHTPTTPAAGLPAADASPARSM LRALLALALGVGLAGGAWWLWRTPSAPAPVVAPSTPVAAVAPPAPPAAVQAAPASAPA AAPASAARPAQAAPPPRPAQPAARAERRAAEAGPAPAAKAPPPRSAPPKPAEAPAAPV FAQADLPPAVREQLPTLQLAGLTYSSNPLYRMVIVNRQVLHEGDQAAPGLVLERIEPG RTVWSFRGYRYALPVQ" gene 530651..531442 /locus_tag="Alide2_0506" /db_xref="GeneID:10481527" CDS 530651..531442 /locus_tag="Alide2_0506" /inference="protein motif:PFAM:PF00027" /note="KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain" /codon_start=1 /transl_table=11 /product="putative Crp/Fnr family transcriptional regulator" /protein_id="YP_004386441.1" /db_xref="GI:330823138" /db_xref="InterPro:IPR000595" /db_xref="GeneID:10481527" /translation="MLACMNQDASLHQRRRPPTAHELGGIPWLGLLQPAERERAVAAL VVGDARPGDYVCRTGRSPTYWFGVVEGLLKVAIESAQGEAVTFTGMPPGGWFGEGTAI KREPYRFNVQALRASLVAGLPIDDFHWLLDHSIGFNRFIMDQLNERLGQFIAAREIDR LGSPDARVARGLAALFNPVLYPGVGQVLRITQQELAYLVGLSRQRVNEALAFLEAQGA IRVEYGGLRVLDLQALRSSPFARTEGDEGARTRRRAAAGAAHPAL" misc_feature 530798..531076 /locus_tag="Alide2_0506" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature order(530939..530944,530969..530977) /locus_tag="Alide2_0506" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature order(531035..531043,531053..531061) /locus_tag="Alide2_0506" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature 531197..531337 /locus_tag="Alide2_0506" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 531481..532401 /locus_tag="Alide2_0507" /db_xref="GeneID:10481528" CDS 531481..532401 /locus_tag="Alide2_0507" /inference="protein motif:TFAM:TIGR00093" /note="TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: ajs:Ajs_0474 RNA-binding S4 domain-containing protein; SMART: RNA-binding S4" /codon_start=1 /transl_table=11 /product="pseudouridine synthase Rsu" /protein_id="YP_004386442.1" /db_xref="GI:330823139" /db_xref="GO:0003723" /db_xref="GO:0016866" /db_xref="InterPro:IPR000748" /db_xref="InterPro:IPR002942" /db_xref="InterPro:IPR006145" /db_xref="GeneID:10481528" /translation="MPDTPSRIHPPATQAPSAAPRTRLVLRRPDPAAKAPSTARPAQA RAPAARPPAAADGRMRLNKRMADLGLCSRREADDWIAQGWVRVNGQVAVMGLQVGPQD RIEVDRAAQGRQSQQVTILLHKPMGYVSGQAEDGHTPAVALVNARSHWQGDASRMRFA PAQLKGLAPCGRLDIDSVGLLVLTQDGRVARQLIGEDSAVDKEYLVRVQYGERTQDVR AVFPADRLALLCHGLLLDGQPLKPAQVDWQNPEQLRFVLREGKKRQIRRMCELVGLKV VGLKRIRIGRVLLGNLPVGQWRYLAPGERF" misc_feature 531652..532398 /locus_tag="Alide2_0507" /note="16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187" /db_xref="CDD:31380" misc_feature 531655..>531801 /locus_tag="Alide2_0507" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature order(531658..531660,531694..531696,531700..531705, 531709..531714,531721..531726,531730..531732, 531751..531762,531763..531771,531775..531777) /locus_tag="Alide2_0507" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature 531820..532398 /locus_tag="Alide2_0507" /note="PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of...; Region: PseudoU_synth; cl00130" /db_xref="CDD:193668" misc_feature order(531991..532002,532276..532278) /locus_tag="Alide2_0507" /note="active site" /db_xref="CDD:73252" gene 532499..534460 /locus_tag="Alide2_0508" /db_xref="GeneID:10481529" CDS 532499..534460 /locus_tag="Alide2_0508" /inference="protein motif:PFAM:PF00183" /note="KEGG: dia:Dtpsy_0466 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain" /codon_start=1 /transl_table=11 /product="Heat shock protein Hsp90" /protein_id="YP_004386443.1" /db_xref="GI:330823140" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR020576" /db_xref="GeneID:10481529" /translation="MSKHTHSFQAEVAQLLHLVTHSLYSNKEIFLRELISNASDACDK LRFEALNDAALYEDAPNLEVRVAFDTEARTITITDNGIGMSEQEAVDHLGTIAKSGTK EFMSRLTGDQKATASEQGQLIGQFGVGFYSGFIVADRITVESRRAGLPAGQGVRWTSG GAGDFEVEQIERPARGTSVILHLRDDAGDYLNAWKLKQIIGKYSDHISLPILMEKEEW KEGEKEGEPGQMVKTGEWETVNKASALWTRPKKEITAEQYQDFYKTISHDFENPLTWS HNRVEGNTEYTQLLYIPAKAPFDLWNRDKKAGVKLYVKRVFIMDDAEALMPSYLRFVK GVIDSNDLPLNVSRELLQESRDVRLIRDGSVKRVLAMLEDLAKHDRHEASTDAEGVTD VVSEEDKAKEGKYTQFYTEFGAVLKEGLGEDFANRERIAKLLRFASTSTDSASVSFAD YKARMKEGQEAIYYITADTLAAAKNSPQLEVFKKKGIEVLLMTDRVDEWALNFLHDFD GTPLQSVAKGAVDLGKLQDEAEKKAAEEAAEQFKPVLARLKEALKDKAEDVRVTTRLV DSPACLVVQDGGMSMQLARLLKQAGQSAPDAKPVLEVNPEHPLVKKLDGSVHFHDLAN ILFDQALLAEGGLPEDPAAYVKRVNALLV" misc_feature 532499..534457 /locus_tag="Alide2_0508" /note="heat shock protein 90; Provisional; Region: PRK05218" /db_xref="CDD:179965" misc_feature 532574..532942 /locus_tag="Alide2_0508" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene 534493..534978 /locus_tag="Alide2_0509" /db_xref="GeneID:10481530" CDS 534493..534978 /locus_tag="Alide2_0509" /inference="similar to AA sequence:KEGG:Daci_1191" /note="KEGG: dac:Daci_1191 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386444.1" /db_xref="GI:330823141" /db_xref="GeneID:10481530" /translation="MKTAPNALTRDGRQGRAAGALPWAALVLAAMLQGCGSVGAGVGV GIPVGPVSVGVGVGSGGISAGVGAGAGPLGVGVGVNQRGQVLGGAGVGVSTGVGGARV GAGVGTSTVLHDPGQPAATPAEAPSAPAQPAAPAPGGGEIQWRDSSGRIVPACRVEGR C" gene 535072..536052 /locus_tag="Alide2_0510" /db_xref="GeneID:10481531" CDS 535072..536052 /locus_tag="Alide2_0510" /inference="similar to AA sequence:KEGG:Dtpsy_0467" /note="KEGG: dia:Dtpsy_0467 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386445.1" /db_xref="GI:330823142" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481531" /translation="MRIKTVLATVALALGFTGAAQAQTSNYPNRPITLVVPAGAGGGT DVVARVLADQLGKRLGQAVVVDNKTGASGMLGTQAVARAAPDGYTLLVAYSTPVFYAH HIFAKVPYDIRKDFEFITQLASTSLVMMVNANVPVKNMKDFMAWAQANKGKINYGSYG QGSAGHLMSAYLSDSRKLDMTHVAYKSEAPHIQDLAGGVVSWGLGTIAAAQGVLKDNR VRPIAIFGPKRLAELPDVATMAEQGFADPEFNTVAWFTLLAPAGTPKPIVQRLEKEAV EIIHSTAMKARFQVFGLESVPGGAAQFHKDFDAVDPVIQKLVKISGAKAD" misc_feature 535072..536016 /locus_tag="Alide2_0510" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" sig_peptide 535072..535140 /locus_tag="Alide2_0510" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 23" misc_feature 535210..536040 /locus_tag="Alide2_0510" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(536053..537096) /locus_tag="Alide2_0511" /db_xref="GeneID:10481532" CDS complement(536053..537096) /locus_tag="Alide2_0511" /inference="protein motif:PFAM:PF01636" /note="PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0479 serine/threonine protein kinase" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_004386446.1" /db_xref="GI:330823143" /db_xref="InterPro:IPR002575" /db_xref="GeneID:10481532" /translation="MTTLAAHDTPLHPYATLTPDLVLDALASVGLHGDGRLMALGSYE NRVYQVTLEDGSRVVAKFYRPGRWSEAQILEEHAFALELAGAEVPVVAPLLLQGRSLH RHAGFDFAVSPWRGGRMPELDDFEVLEWLGRYLARIHNVGAARPFVHRPRLDLPGFGQ EPRDWLLGAQAIPMDQQSAWRDACDEALELIAAGARPSSTGGLFGLKDATTIRLHGDC HPGNVLWTPVDDAGHGGPHFVDLDDARMGPAVQDLWMLLSGDRRQRTMQLATLLDGYE QLRPFDRRELALIEPLRTLRLIHYSAWLARRWSDPIFPLNFPWFGSSDYWRGQVDMLR EQIEAMREEPLAA" misc_feature complement(536239..536970) /locus_tag="Alide2_0511" /note="Phosphotransferase enzyme family; Region: APH; pfam01636" /db_xref="CDD:190058" misc_feature complement(536155..536967) /locus_tag="Alide2_0511" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" misc_feature complement(order(536377..536382,536425..536427, 536431..536436,536446..536448,536752..536763, 536824..536826,536917..536919,536923..536925, 536956..536958)) /locus_tag="Alide2_0511" /note="active site" /db_xref="CDD:88612" misc_feature complement(order(536377..536382,536425..536427, 536431..536436,536446..536448,536752..536763, 536824..536826,536917..536919,536923..536925, 536956..536958)) /locus_tag="Alide2_0511" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88612" gene complement(537119..538567) /locus_tag="Alide2_0512" /db_xref="GeneID:10481533" CDS complement(537119..538567) /locus_tag="Alide2_0512" /inference="protein motif:PFAM:PF00069" /note="PFAM: Serine/threonine-protein kinase-like domain; UspA; KEGG: dia:Dtpsy_0471 serine/threonine protein kinase" /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase" /protein_id="YP_004386447.1" /db_xref="GI:330823144" /db_xref="GO:0004672" /db_xref="GO:0005524" /db_xref="InterPro:IPR006016" /db_xref="InterPro:IPR017442" /db_xref="GeneID:10481533" /translation="MKLLTPGTEIDGFVVHECIHAGGMAHIYRVGYANAARNPGFPLA MKIPRMTAGDGAENIVSFEVELTILPTLSGHHVPRFVAAGDLMRLPYLVMEYVEGRTL QHWLEEHPRTLTPEGALQDTADIARIGSAMALAAHSIHQQNVCHLDLKPANVLLREGG SVVLLDFGLSCHAHYPDLLAEEMRKAVGSPTWIAPEQVVGVRGDLRSDIFAIGVMLYE MATGELPFGAPATQGGMRQRLWMTPAPPRQHRPDLPEWLQEVILRCLEPEAAQRYPSA AHLAFDLANPEQVPITERGRRLRGPGLAVHFKRWIKAAGMHYQPSPLPARQIEQVPIV MVAVPHDDVTDATLYSLREAAARSLGIRPGARLACVTVISPSASSTSDSARSETMLHR THLARLKQWAAGLDLSRHSASYHVLEAGDVAQALVRYAEGNRVGMMILGAATHGLQLQ RFIDTVPIRVARDAPCTVILVKQQLPFDALGQ" misc_feature complement(537737..538504) /locus_tag="Alide2_0512" /note="Catalytic domain of Protein Kinases; Region: PKc; cd00180" /db_xref="CDD:173623" misc_feature complement(order(537995..538006,538061..538063, 538070..538072,538103..538105,538109..538114, 538118..538120,538124..538126,538259..538261, 538265..538267,538277..538288,538334..538336, 538430..538432,538436..538438,538487..538489, 538499..538504)) /locus_tag="Alide2_0512" /note="active site" /db_xref="CDD:173623" misc_feature complement(order(538070..538072,538103..538105, 538109..538114,538118..538120,538124..538126, 538265..538267,538277..538288,538334..538336, 538430..538432,538436..538438,538487..538489, 538499..538504)) /locus_tag="Alide2_0512" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature complement(order(537995..538006,538061..538063, 538112..538114,538118..538120,538124..538126, 538259..538261,538265..538267,538499..538501)) /locus_tag="Alide2_0512" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature complement(537731..538459) /locus_tag="Alide2_0512" /note="Serine/Threonine protein kinases, catalytic domain; Region: S_TKc; smart00220" /db_xref="CDD:128516" misc_feature complement(order(537995..538006,538055..538075)) /locus_tag="Alide2_0512" /note="activation loop (A-loop); other site" /db_xref="CDD:173623" misc_feature complement(537155..537568) /locus_tag="Alide2_0512" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(537197..537208,537236..537241, 537245..537250,537452..537454,537542..537544, 537554..537559)) /locus_tag="Alide2_0512" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(538571..539329) /locus_tag="Alide2_0513" /db_xref="GeneID:10481534" CDS complement(538571..539329) /locus_tag="Alide2_0513" /inference="protein motif:PFAM:PF00149" /note="PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_0472 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004386448.1" /db_xref="GI:330823145" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10481534" /translation="MKIALLSDIHANLQALEACLEHARAHGARQFALLGDLVGYGADP GPVLDRVMQLVAEGTPCVRGNHDAAAVAPPAVAENLGEQSAQWTHPRLNARQLAFLAG LPLAARMGMDALLVHASADGPERWHYVADGNAAERSMAAATQMDPAIRYVFSGHVHEQ ALYFLTPTAKLMRFSPQPGVPVPVPPHRQWLAIVGSCGQPRDGDTRAMYALFDPDAAT ITFQRVPYDHMAAAAAVRAGGLPAFFADRLEKGR" misc_feature complement(538850..539329) /locus_tag="Alide2_0513" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature complement(<538976..539311) /locus_tag="Alide2_0513" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" misc_feature complement(order(538979..538981,539132..539137, 539222..539224,539300..539302,539306..539308)) /locus_tag="Alide2_0513" /note="active site" /db_xref="CDD:163614" misc_feature complement(order(538979..538981,539135..539137, 539222..539224,539300..539302,539306..539308)) /locus_tag="Alide2_0513" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163614" gene 539559..540755 /locus_tag="Alide2_0514" /db_xref="GeneID:10481535" CDS 539559..540755 /locus_tag="Alide2_0514" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: ajs:Ajs_0058 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386449.1" /db_xref="GI:330823146" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481535" /translation="MRPLQGVRVLDLSSVIFGPLASQVLADYGAEVVKIEPPKGDSTR HTGPAAEPGMAAMFLGSNRSKKSVALDLKQPAAQKALQALIGTADVFMHSMRPQKLAG LGLAPEALRARHPRLVYASLLGFLPGPYAGRPAYDDVIQGMSGLADLMDQQSGEARYL PTIAADKTCGHVAAHAILAALWQRERTGQGAFVEVPMFESMVGFNLVEHFYGQHFEPP RSVPGYPRVLAPWRRPYRTSDGLVAMMPYTDLHWQRFFAEVGAPQHASDPRFTDIAAR TAHIAELLELASGYVVRQTTAHWLAACERLEIPAAPVARLDELRSDEHLAAIGFFEEV QDPAMGTVRFPGVGVRFDGRRPPVAMPPRLGEHTRALLAEAGLDAPQIQALVDQGAAI VPQPKN" misc_feature 539559..540731 /locus_tag="Alide2_0514" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 540790..541251 /locus_tag="Alide2_0515" /db_xref="GeneID:10481536" CDS 540790..541251 /locus_tag="Alide2_0515" /inference="similar to AA sequence:KEGG:CtCNB1_2196" /note="KEGG: ctt:CtCNB1_2196 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386450.1" /db_xref="GI:330823147" /db_xref="GeneID:10481536" /translation="MDHTAPRLGQGFVWQDLRVGQRFRTFRRTLTETDLVQFIGVTGM LEAIFIEDGYEGAAMAGRPVPGALTYTLIEGFILQTMIQGTGLAMLELHQKILAPVVV GDTIEAMVEVTDIRPTSRSGRAVVTSRIDVFNQKGVQVMTYTATRLLAGRG" misc_feature 540889..541233 /locus_tag="Alide2_0515" /note="(R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel...; Region: R_hydratase_like; cd03441" /db_xref="CDD:48036" misc_feature order(540904..540906,540919..540921,540925..540927, 540934..540936,540985..540990) /locus_tag="Alide2_0515" /note="active site" /db_xref="CDD:48036" misc_feature order(540919..540921,540925..540927,540934..540936, 540985..540987) /locus_tag="Alide2_0515" /note="catalytic site [active]" /db_xref="CDD:48036" gene 541372..541461 /locus_tag="Alide2_0516" /pseudo /db_xref="GeneID:10481537" gene complement(541514..542314) /locus_tag="Alide2_0517" /db_xref="GeneID:10481538" CDS complement(541514..542314) /locus_tag="Alide2_0517" /EC_number="4.1.3.39" /inference="protein motif:TFAM:TIGR02311" /note="TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: dia:Dtpsy_0475 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain" /codon_start=1 /transl_table=11 /product="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" /protein_id="YP_004386451.1" /db_xref="GI:330823148" /db_xref="GO:0018802" /db_xref="InterPro:IPR005000" /db_xref="InterPro:IPR012689" /db_xref="GeneID:10481538" /translation="MPLTNTFKHALASGQAQIGLWCTLASPYAAELVAGSGFDWLLLD TEHTPADVPLVLQQLQAVAAEPRHRSHPVVRAAWNDTVLIKRLLDIGAQTLLLPFVQN ADEARAAVAAMRYAPRGIRGMGGTMRASHYGRDVDYVRDAEGELCLLVQVETAEALAQ IEAIAAVDGVDGIFIGPADLSASMGHPGNAGHPEVRAAIDDAIRRIRTAGKAPGILMV DGARARECIALGAQFVAVGMDMILLRNAADDLAARFTAGACGAVDTAY" misc_feature complement(541598..542314) /locus_tag="Alide2_0517" /note="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]; Region: HpcH; COG3836" /db_xref="CDD:33628" misc_feature complement(541598..542302) /locus_tag="Alide2_0517" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(542317..543144) /locus_tag="Alide2_0518" /db_xref="GeneID:10481539" CDS complement(542317..543144) /locus_tag="Alide2_0518" /EC_number="4.2.1.80" /inference="protein motif:TFAM:TIGR02312" /note="TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: aav:Aave_4269 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetase, C-terminal-like" /codon_start=1 /transl_table=11 /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase" /protein_id="YP_004386452.1" /db_xref="GI:330823149" /db_xref="InterPro:IPR002529" /db_xref="InterPro:IPR012690" /db_xref="GeneID:10481539" /translation="MNMPNSFLSPAQLEAAAEQLETAERTRTPCRQFSLQYPGMGFDD AYAVQDAWMRLKLRQGRRVLGHKIGLTSKAMQRAVNISEPDFGTLLDDMFYRDGAAIP TEKFLQLRIEAELAFVLGRPLSGPHCTLFDVLEATAYITPALEILDARIQRVDPATGK TRTVIDTISDNAANAALVLGGRAFKPQLIDADLRRIGAIVSKNGEVEETGLAAGVLNH PAYGVAWLANRLHRHGIQLQAGEVVLAGSFIRPIDVVQGDTVVADYGEFGTVSCHFG" misc_feature complement(542320..543063) /locus_tag="Alide2_0518" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene complement(543141..544010) /locus_tag="Alide2_0519" /db_xref="GeneID:10481540" CDS complement(543141..544010) /locus_tag="Alide2_0519" /EC_number="5.3.3.10" /inference="protein motif:PRIAM:5.3.3.10" /note="KEGG: aav:Aave_4268 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate Delta-isomerase" /protein_id="YP_004386453.1" /db_xref="GI:330823150" /db_xref="InterPro:IPR002529" /db_xref="GeneID:10481540" /translation="MKLVSYLYDDRPGWGAVVQGNRIVELDRRLAGFDSVASLLACGD AALRQARSLAEHESPSLDLSAVQLLPPVPMPRKIFCIGVNYAHRNAEYKDGSDLPKYP SIFMRVPDSFVGHGQALVQPHESQQLDYEGEIGLVIGRGGRRISKAQALAHIGGLTCV NEGTIRDWVHHAKFNVTQGKNFHASGAVGPWLVTADEFPEGFSNVRVRTRVNGELRQD DTTANLMFDFAYLIHYLSTFTALEPGDLIVTGTPIGAGIRFDPPRFLRPGDVVEVEVD GVGTLRNMVKAEA" misc_feature complement(543156..543782) /locus_tag="Alide2_0519" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene complement(544007..544900) /locus_tag="Alide2_0520" /db_xref="GeneID:10481541" CDS complement(544007..544900) /locus_tag="Alide2_0520" /inference="protein motif:PFAM:PF04909" /note="PFAM: Amidohydrolase 2; KEGG: aav:Aave_4267 amidohydrolase 2" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004386454.1" /db_xref="GI:330823151" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10481541" /translation="MPDYLPFDPTPHAPRPLPPALACDSQFHVFGPRERYPVRPGAAY EMPTATWQVAQKLHATLGVQRGVIVQATTYGADHQVVLDALAGLNASGSPRRYMACAN AAVLVERDDAYLQRLHDAGVRGARFTRGGLGISFTPQQQERALERVRELGWYVKVQPE PGGIAEQMQAFLHLQDVPVLMDHMGRANPELGENDPSLACILELFQRGNFWVMLSLSE KISRQGAPWNDVVPLARRLIDAAPDRCVWGSDWPHPVSVKQPPNEGDLLELLYRFAPD AEMLHKILVANPAHFFGFETP" misc_feature complement(544016..544834) /locus_tag="Alide2_0520" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature complement(544034..544834) /locus_tag="Alide2_0520" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature complement(order(544151..544153,544352..544354, 544439..544441,544817..544819,544823..544825)) /locus_tag="Alide2_0520" /note="active site" /db_xref="CDD:30035" gene complement(544921..545373) /locus_tag="Alide2_0521" /db_xref="GeneID:10481542" CDS complement(544921..545373) /locus_tag="Alide2_0521" /inference="protein motif:PFAM:PF01042" /note="PFAM: Endoribonuclease L-PSP; KEGG: aav:Aave_4266 endoribonuclease L-PSP" /codon_start=1 /transl_table=11 /product="endoribonuclease L-PSP" /protein_id="YP_004386455.1" /db_xref="GI:330823152" /db_xref="InterPro:IPR006175" /db_xref="GeneID:10481542" /translation="MDTHHQASGNHGGLSTPLGRAAPVRRTSIYIEGFSHKNPIPAAC RIGPLVESGSVLGTDPATGQIADGIEAQCRCMLDNMRRIVEAAGGNTADIVKVTVWMK DRTQRPALNAPWLEMFPDAVSRPARHAIHAPELDMGKLIECSFTAYIA" misc_feature complement(544933..545247) /locus_tag="Alide2_0521" /note="YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448" /db_xref="CDD:100004" misc_feature complement(order(544936..544938,544942..544944, 544948..544950,544978..545001,545032..545034, 545041..545043,545074..545076,545080..545082, 545086..545091,545095..545097,545212..545217, 545221..545223,545227..545229,545236..545238, 545242..545244)) /locus_tag="Alide2_0521" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100004" misc_feature complement(order(544948..544950,544993..544995, 545041..545043,545053..545055)) /locus_tag="Alide2_0521" /note="putative active site [active]" /db_xref="CDD:100004" gene complement(545331..546311) /locus_tag="Alide2_0522" /db_xref="GeneID:10481543" CDS complement(545331..546311) /locus_tag="Alide2_0522" /inference="similar to AA sequence:KEGG:Aave_4265" /note="KEGG: aav:Aave_4265 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386456.1" /db_xref="GI:330823153" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481543" /translation="MQRRILLSHALLWACAGAAPLAIAQTDTWPGKPVKLVLPYPPGG NVDGAARIISEQLQQHFKQPFIVDNRPGAGGMIAGEAVAKSTPDGYTFFMGANGPILF SPLIFKRSPYDWKKDFAPVSSVSFTPLLLQVNPTTPYKSMADLLAAAKANPGAITMAS PGAGTTNHLVSEYLQRESGARWTTVHYKGNAPATTDLLGGQVQFNFDQLSVAQQFLQS NRTRALVVTSPKRLPQLPDVPTLSESGFPGFSAETFTGILAPKGTPTAIVNKLADALR QILSDKGVQDRFVALGSEARATTPEQFTQYLTQEDNRWTPIIKQAGITAD" sig_peptide complement(546237..546311) /locus_tag="Alide2_0522" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.989 at residue 25" misc_feature complement(545343..546284) /locus_tag="Alide2_0522" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(545343..546164) /locus_tag="Alide2_0522" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 546516..547154 /locus_tag="Alide2_0523" /db_xref="GeneID:10481544" CDS 546516..547154 /locus_tag="Alide2_0523" /inference="protein motif:PFAM:PF01613" /note="KEGG: aav:Aave_4263 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding" /codon_start=1 /transl_table=11 /product="flavin reductase domain-containing proten" /protein_id="YP_004386457.1" /db_xref="GI:330823154" /db_xref="InterPro:IPR002563" /db_xref="GeneID:10481544" /translation="MTYTTLYADTLAPEATYRLMSGIVVPRPIAWITTLSLTGVVNLA PFSCFTFVSNKPPMLGVNIGRKAGARKDTGAYILANGEFVVNIGHRGHMHAIHESSAE HAPDVSEAELLGLATVASETIAVPRLADAPVSMECRLDRVIPFGDTGAEFFVGVVTAF HVREDLLQGGKIDTRALDPVCRIAGPNYATLGEIVTLRAMAQTPKTVLASEG" misc_feature 546561..547103 /locus_tag="Alide2_0523" /note="Flavin Reductases; Region: FlaRed; cl00801" /db_xref="CDD:193940" gene 547151..547939 /locus_tag="Alide2_0524" /db_xref="GeneID:10481545" CDS 547151..547939 /locus_tag="Alide2_0524" /inference="protein motif:PFAM:PF09339" /note="KEGG: aav:Aave_4262 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004386458.1" /db_xref="GI:330823155" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10481545" /translation="MTGTASPAGQDGAQSIRRAIAVLRIVASGQESGVRLTDVASATG LNRPTVHRILRALVEEGAVEQQPVTRRYLIGTEVSLLGLARPAGFPLRSLAAQHLHHI GEVLGETAFLTIRKGDDSVCLARALGSYPIKVLSIEVGARRLLGVGVSGVVLLASLPY EEAVEMMRRNAGRLRGLRLDAQDILERCAAARMLGYAYTATGVVRGTRAVAVPVHSPA GETVAGIAVTAISSRLTESRLLHAVQVMQEQARLIGEKIGQRRR" misc_feature 547190..547924 /locus_tag="Alide2_0524" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 547190..547447 /locus_tag="Alide2_0524" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature <547688..547909 /locus_tag="Alide2_0524" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene complement(547947..548795) /locus_tag="Alide2_0525" /db_xref="GeneID:10481546" CDS complement(547947..548795) /locus_tag="Alide2_0525" /EC_number="1.1.1.157" /inference="protein motif:PRIAM:1.1.1.157" /note="KEGG: ajs:Ajs_3718 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal" /codon_start=1 /transl_table=11 /product="3-hydroxybutyryl-CoA dehydrogenase" /protein_id="YP_004386459.1" /db_xref="GI:330823156" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="GeneID:10481546" /translation="MTITTVGIIGAGTMGNGIAQACAVSGINVVMVDVSDAAVQKGVA TVAGSLDRLIKKEKITAADKDAALARIKGSTSYDDLKAAQIVIEAATENHELKLKILK QVDAIVAPEVILASNTSSISITKLAAATGRADRFIGMHFFNPVPMMALVEIIRGLQTS DATHDSVKQLAERLGKSPITVKNAPGFVVNRILVPMINEAFFVLAEGLATPEDIDAGM KLGCNQPIGPLALADMVGLDVCLAVMDVYLAEFGDSKYRACPLLREMVAAGRLGRKTG RGVYQY" sig_peptide complement(548730..548795) /locus_tag="Alide2_0525" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.742) with cleavage site probability 0.710 at residue 22" misc_feature complement(547950..548750) /locus_tag="Alide2_0525" /note="3-hydroxybutyryl-CoA dehydrogenase; Validated; Region: PRK05808" /db_xref="CDD:180269" misc_feature complement(548244..548747) /locus_tag="Alide2_0525" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(547950..548240) /locus_tag="Alide2_0525" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" gene 548895..550487 /locus_tag="Alide2_0526" /db_xref="GeneID:10481547" CDS 548895..550487 /locus_tag="Alide2_0526" /EC_number="1.1.99.1" /inference="protein motif:PRIAM:1.1.99.1" /note="KEGG: dia:Dtpsy_0477 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal" /codon_start=1 /transl_table=11 /product="Choline dehydrogenase" /protein_id="YP_004386460.1" /db_xref="GI:330823157" /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR007867" /db_xref="GeneID:10481547" /translation="MRDFDYVVIGGGSAGCVLAGRLSEDPAVRVGLLEAGGSDDSVLI HCPAGLAVMARTGRYNWGLQTTAQPGLGGRRGYQPRGKVLGGSSSVNAMVYVRGHPDD YEHWAAAGNPGWGWRDVLPYFLRAEHNERWDNAWHGRGGPLNVMDLRSPNRFSAVFVD AAVQAGHARNDDFNGPVQEGVGLYQVTHRNGERCSAAKAYLTPHLSRPNLQVITGAHA TRILFEGRRAVGVEYRQGGRLQQVRARREVLLSAGALLSPQLLMLSGVGPADELQRHG IGVLHHLPGVGQNLHDHPDVVQVVDAPRLTDLFGLSPRGALNLLRGIRQWRAQRSGML TTNFAEAGGFLKSSPDEARPDLQLHFVIGKLVDHGRKTVLGHGYSLHVCLLQPQSRGS VRLASGDPLQAPLIDPGFLAHDGDMARMVRGFQMGRHILRQPALAQYGGSEGPALAQA QTEEQIAQFIRRHADTIYHPVGSCRMGPGPLDVVDGELRVHGLQGLRVVDASIMPRIV SGNTNAPTVMIAERAADLIKKF" misc_feature 548895..550478 /locus_tag="Alide2_0526" /note="choline dehydrogenase; Validated; Region: PRK02106" /db_xref="CDD:179368" misc_feature 550053..550463 /locus_tag="Alide2_0526" /note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199" /db_xref="CDD:191229" gene 550604..550873 /locus_tag="Alide2_0527" /pseudo /db_xref="GeneID:10481548" gene complement(550867..551172) /locus_tag="Alide2_0528" /pseudo /db_xref="GeneID:10481549" gene complement(551199..552017) /locus_tag="Alide2_0529" /db_xref="GeneID:10481550" CDS complement(551199..552017) /locus_tag="Alide2_0529" /inference="protein motif:TFAM:TIGR01291" /note="KEGG: ajs:Ajs_3712 ABC transporter; TIGRFAM: ABC-2 type transporter, NodJ; PFAM: ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter, NodJ family" /protein_id="YP_004386461.1" /db_xref="GI:330823158" /db_xref="GO:0005215" /db_xref="InterPro:IPR005981" /db_xref="InterPro:IPR013525" /db_xref="GeneID:10481550" /translation="MAPMTDPSIWRAPDLSLRWWPVFLRNLLVWRKLAIPSLVGNIAE PLMWLVAFGYGMGALVGEVQVGGDGGARVPYILFLASGSICMSAMNAASFEALYSAFS RMHVQKTWDGIMNAPISLDSVLLAEMLWAAFKALFTATAILGVMLALGISHAPKLLVA WPVLLAVGIMFSSIALIFNALAQGYDFFTYYFTLVLTPMMFLSGVFFPREQLPTAVRI ASDWLPLTNAVELVRPLFMDQWPAHPLRHGLVVAVTTIAAYWVALALTRRRFRA" misc_feature complement(551208..551981) /locus_tag="Alide2_0529" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene complement(552019..552960) /locus_tag="Alide2_0530" /db_xref="GeneID:10481551" CDS complement(552019..552960) /locus_tag="Alide2_0530" /EC_number="3.6.3.30" /inference="protein motif:PRIAM:3.6.3.30" /note="PFAM: ABC transporter-like; KEGG: ajs:Ajs_3711 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Fe(3+)-transporting ATPase" /protein_id="YP_004386462.1" /db_xref="GI:330823159" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481551" /translation="MNVLFEAQDLRKRYGDATVVDGVSFAIAPGECLGVIGPNGAGKT TTIRMCLGLTAPDAGSVRFYPGGGAAPLSMPLDALAIKAQLGVVAQFDSLDPDFSCAE NLRVFGRYFGLKGAAMDARIGPLLEFAALTSKAGARPGELSGGMRRRLSLARALVNDP RLLLLDEPTTGLDPQARHLMWERLQRLLQQGKSILLTTHFMDEAERLCSRLLVLDHGR KIAEGRPRELIAEHLESDVVEAYGNGALTLAHDAQLRPLARRIEVSGETVFFYTQDAR PLLQALTGHGHLRTLHRPANLEDLFLKLTGRQIREDA" misc_feature complement(552028..552945) /locus_tag="Alide2_0530" /note="nodulation ABC transporter NodI; Provisional; Region: PRK13537" /db_xref="CDD:184124" misc_feature complement(552277..552945) /locus_tag="Alide2_0530" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(552829..552852) /locus_tag="Alide2_0530" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(552364..552366,552460..552465, 552691..552693,552826..552834,552838..552843)) /locus_tag="Alide2_0530" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(552691..552702) /locus_tag="Alide2_0530" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(552508..552537) /locus_tag="Alide2_0530" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(552460..552477) /locus_tag="Alide2_0530" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(552442..552453) /locus_tag="Alide2_0530" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(552358..552378) /locus_tag="Alide2_0530" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(553065..554777) /locus_tag="Alide2_0531" /db_xref="GeneID:10481552" CDS complement(553065..554777) /locus_tag="Alide2_0531" /inference="protein motif:PFAM:PF07519" /note="PFAM: Tannase/feruloyl esterase; KEGG: reu:Reut_A1509 tannase and feruloyl esterase" /codon_start=1 /transl_table=11 /product="Tannase and feruloyl esterase" /protein_id="YP_004386463.1" /db_xref="GI:330823160" /db_xref="InterPro:IPR011118" /db_xref="GeneID:10481552" /translation="MTTPPAIRPPWPRGARLLLTASAALALAACGGGSHHFSFDTASR NLATQQVAADQIGLPTKGAVVTSVETPTAASGPQPPASIRANIAIAPVDTAAPAIKMG LLLPKEWNGKVVMLGGGGYNGTIPSLYTYSAAPASQGPYPLLDQGYAVFASDSGHQAG AAGSRDGSFGTNDEAAANFSGAALKKVSDVADVLVTRFYGRKPGKRYFIGGSTGGREA LAVAQKWPADWDGVVSWYPAWNAASLDLQFGRLSRAFAQPDAYPSLAQRKLLRQAAMA RCDALDGIADGIVSNVAACNAQFDPATAQFEGKPLRCPSGGNENDGCLSDAMIAALHA YNTPITFGSPLGSGETQYPGFNVWGSELGETGPSPLQPTVTLLAMNTTAPASPAPLTA PYWAVFWDQWVRYFVTRDANFDSLSLDPQNPGPWAGRIQELTKLQDINSTDLSAFQKR GGKLLMAHGTADVLVSTRATAQYYERLVQTMGADTVKSFARYYEVPGYGHAASTAFNA NWDSLKALDQWVSIGTAPAGQVVTDTAGVPGRTRPLCEYPGWPRYGGTGDANKAESFS CVAP" misc_feature complement(553074..554513) /locus_tag="Alide2_0531" /note="Tannase and feruloyl esterase; Region: Tannase; pfam07519" /db_xref="CDD:116138" gene complement(554919..556403) /locus_tag="Alide2_0532" /db_xref="GeneID:10481553" CDS complement(554919..556403) /locus_tag="Alide2_0532" /EC_number="3.2.2.4" /inference="protein motif:TFAM:TIGR01717" /note="TIGRFAM: AMP nucleosidase; KEGG: aav:Aave_4246 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase, N-terminal; Nucleoside phosphorylase domain" /codon_start=1 /transl_table=11 /product="AMP nucleosidase" /protein_id="YP_004386464.1" /db_xref="GI:330823161" /db_xref="InterPro:IPR000845" /db_xref="InterPro:IPR011271" /db_xref="InterPro:IPR018953" /db_xref="GeneID:10481553" /translation="MASSLAFITEPSFHAEPADALAQVQHIYQQQIGHLRDAMQRFVA GETPANHVRACYPYVRVQIATVARAATQLAYGFVEGPGCYETTLTRPDLFAGYYTEQF RLLRASHGVELEVGLSRQPIPIHFSFAEHDYIEGTLSPERRTLMRDVFDLPDLAAMDD GIANGTWTPSAGEAQPLSLFTGPRVDYSLHRLRHYTGTLPEWFQNFVLFTNYQFYIDE FVRLGHAEMARADSEYVAFIEPGNVVTRRTGLPAQPGDELGAPPPRLPQMPAYHLVRA DNSGITMVNIGVGPANAKTITDHIAVLRPHAWMMLGHCAGLRNSQQLGDYVLAHAYVR EDHVLDEELPLWVPIPALAEIQVALQQAVAEVTQMGGPDLKRIMRTGTVASTDNRNWE LLPDNMPQRRFSQSRAVALDMESATIAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMA NHFYRERVQQHLLIGMRAIDILRAGGVQRLHSRKLRSFAEVAFQ" misc_feature complement(554922..556379) /locus_tag="Alide2_0532" /note="AMP nucleosidase; Provisional; Region: PRK08292" /db_xref="CDD:181358" misc_feature complement(555876..556352) /locus_tag="Alide2_0532" /note="Bacterial AMP nucleoside phosphorylase N-terminus; Region: AMNp_N; pfam10423" /db_xref="CDD:151003" misc_feature complement(554988..555776) /locus_tag="Alide2_0532" /note="Phosphorylase superfamily; Region: PNP_UDP_1; cl00303" /db_xref="CDD:193757" gene complement(556439..558535) /locus_tag="Alide2_0533" /db_xref="GeneID:10481554" CDS complement(556439..558535) /locus_tag="Alide2_0533" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; PAS fold-3; KEGG: dia:Dtpsy_0486 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase" /protein_id="YP_004386465.1" /db_xref="GI:330823162" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013655" /db_xref="InterPro:IPR013656" /db_xref="GeneID:10481554" /translation="MPAKPPSDPVPSGSGSHASAALLRLVADTVPVMLAYYESPELRC RFANQRFADFMERTADGILGTTARDILGEQTWQQILPCVQRALGGETVQHLCQQAGPD GRMRMLEFSLRPQLEPRGGRLATPGILVLVNDVTERLEAEQAVRQSEERMRKFAEATE EGLAFHRDGRILDANASLQRMTGYTLAELVGRSIFDFIQPEYRALAQEYTRRGREYPY ELAMRHKDGHAIPIEAVGKTLPQQQDEYRVVVVRDITARKQAQERARFLALHDPLTQL PNRRHLMLQLARTVATAQERRKRSAVLFVDLDHFKTVNESLGHEAGDQLLCEVARRLQ EGVKATDFVAHVGGDQFVVLLSGLRGRAAAAAAADALIERIRAVYTIGETQLSPSPSV GISVFPDDGYGPDELLRRADAAMQQAKESGRGTRLFYTPDMEGQPAEVLQQEHLLREA VFHDALELHYQPQVQVASGRLVGLEALVRWRHPQRGLVGPDDFIPLAESRGLITPIGR WVLREACRQLKAWHNEGLALVPVAVNLSAIEFRQRDVAGEIARVLQETGLEPQYLEVE ITETTLMQHAEHTRATLQALQAMGVAVTVDDFGTGYSSLTYLKRYPLDKLKVDRSFVA DTPADGDDVAIVTAIVQLARSLQLQSVAEGVQTTEQLTLLQSLGCELAQGFGIAPPMD VRRTRAWLHALPAAAS" misc_feature complement(558122..558454) /locus_tag="Alide2_0533" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(557747..558094) /locus_tag="Alide2_0533" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature complement(557774..558037) /locus_tag="Alide2_0533" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(557855..557857,557870..557872, 557936..557947,557984..557986,558002..558004, 558014..558016)) /locus_tag="Alide2_0533" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(order(557828..557830,557834..557836, 557906..557911,557918..557920,557942..557944, 557954..557956)) /locus_tag="Alide2_0533" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(557264..557731) /locus_tag="Alide2_0533" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(557489..557491,557618..557620)) /locus_tag="Alide2_0533" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(557486..557497,557501..557503, 557567..557569,557579..557581,557591..557596, 557603..557605)) /locus_tag="Alide2_0533" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(557426..557428,557513..557515)) /locus_tag="Alide2_0533" /note="I-site; other site" /db_xref="CDD:143635" misc_feature complement(556487..557203) /locus_tag="Alide2_0533" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene 558599..559591 /locus_tag="Alide2_0534" /db_xref="GeneID:10481555" CDS 558599..559591 /locus_tag="Alide2_0534" /inference="protein motif:TFAM:TIGR01297" /note="KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein" /codon_start=1 /transl_table=11 /product="cation diffusion facilitator family transporter" /protein_id="YP_004386466.1" /db_xref="GI:330823163" /db_xref="GO:0008324" /db_xref="InterPro:IPR002524" /db_xref="GeneID:10481555" /translation="MSFRPVGGRDNPDMPHAAARSLHVPAWMTPHNLLRASMGVAVLT IALKTLAWWISGSVGLLSDALESFVNLAGAMFALAMVTVARRPADADHPYGHHKAEYF SSGFEGILIVGASIAILWAAVLRLMHPQPLEQLGWGMGLSLLSTACNGLLAWGMLRAA QVHRSLALEGDARHLMTDVWTSIGVVVGLLAASATGWTWMDPLVAIGVALNILREGGA LIWRASQGLMDEAMEPTLLARVYTVLQEYGGASGGAVHFDSLTSRRAGARSFVDLHMH VPGRWTLAEAARQRSEVEQALMQAVPGLRATIELLPEDHDTVFEQKVQAGEEQP" misc_feature 558692..559540 /locus_tag="Alide2_0534" /note="Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053" /db_xref="CDD:30402" misc_feature 558725..559537 /locus_tag="Alide2_0534" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" gene 559588..560031 /locus_tag="Alide2_0535" /db_xref="GeneID:10481556" CDS 559588..560031 /locus_tag="Alide2_0535" /inference="protein motif:HAMAP:MF_00518" /note="TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dia:Dtpsy_0488 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase" /codon_start=1 /transl_table=11 /product="D-tyrosyl-tRNA(Tyr) deacylase" /protein_id="YP_004386467.1" /db_xref="GI:330823164" /db_xref="InterPro:IPR003732" /db_xref="GeneID:10481556" /translation="MIGLLQRVSEARVEIAGEVAGRIGAGLLALVCAEQGDGEQQADK LLAKILKLRIFTDEAGKMNRSVQDVGGGLLIVSQFTLAADTRGGNRPGFSQAAAPAEG ERLYDYFVARARAAYPEVATGRFGASMQVHLVNDGPVTIPLRIAP" misc_feature 559588..560016 /locus_tag="Alide2_0535" /note="D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but...; Region: Dtyr_deacylase; cd00563" /db_xref="CDD:29648" misc_feature order(559606..559608,559816..559830,559864..559866, 560008..560010) /locus_tag="Alide2_0535" /note="putative active site [active]" /db_xref="CDD:29648" misc_feature order(559717..559719,559726..559734,559738..559749, 559816..559821,559825..559830,559834..559842, 559846..559860,559864..559866,559966..560016) /locus_tag="Alide2_0535" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29648" misc_feature order(559729..559731,559744..559746,559846..559848, 559855..559857) /locus_tag="Alide2_0535" /note="putative tRNAtyr binding site [nucleotide binding]; other site" /db_xref="CDD:29648" gene complement(560097..560843) /locus_tag="Alide2_0536" /db_xref="GeneID:10481557" CDS complement(560097..560843) /locus_tag="Alide2_0536" /inference="protein motif:PFAM:PF01925" /note="PFAM: Protein of unknown function DUF81; KEGG: dia:Dtpsy_0490 protein of unknown function DUF81" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386468.1" /db_xref="GI:330823165" /db_xref="InterPro:IPR002781" /db_xref="GeneID:10481557" /translation="MFGTPLLLAAAFVAGALNAVAGGGSFLTLPALVFTGVPPVVANA TGTVALLPGYMAGAWGFREDMQPPPGLSMRAVVALSLAGGSAGAALLLVTPDATFRKV VPWLLLAATALFAFGPQLRQWAGSGRHGAAPWKASLGMLAVAAYGGYFNGGLGILLLA LFGLLGQTQLNAMNGMKNLVSALLTAIAVAIYAAGGIVLWPQALLMMVAATLGGYGGA RAARRLPAPVLRWGIVATGLVMAGLFFWKQ" sig_peptide complement(560778..560843) /locus_tag="Alide2_0536" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.947 at residue 22" gene complement(561009..561956) /locus_tag="Alide2_0537" /db_xref="GeneID:10481558" CDS complement(561009..561956) /locus_tag="Alide2_0537" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_1220 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386469.1" /db_xref="GI:330823166" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481558" /translation="MPDFDPQRLLSRLRFRHLQLLLALHEGGSLRAAAGLMHLTQPAL SKALGEIEAAFGAPLFIRTARGLEPTPQGETAIRGAAMLLNELAHLGQETSQQPAVTQ LRIGAPPFVAQGYLPEVLSRLIAEHPHVRVQLQEERVPLLVECLLAGQLDALITSYPT ELPEAAGQPLRYEKLFDAAFTVIAPADHPAGHAHTCDWEYLARQRWVLPTRSSMLRRM MEEVFRRESVMSPTPVIESTSPFTNLQLVKAGLGISAVPSASLRAAPASLGVREVRAV PGISTGPVALIYRGAVANPRVALLRSTLGLAASGETPAP" misc_feature complement(561735..>561863) /locus_tag="Alide2_0537" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(<561198..561650) /locus_tag="Alide2_0537" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature complement(order(561210..561215,561219..561224, 561240..561257,561549..561569,561573..561575, 561585..561587,561594..561599,561603..561608)) /locus_tag="Alide2_0537" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 562061..563032 /locus_tag="Alide2_0538" /db_xref="GeneID:10481559" CDS 562061..563032 /locus_tag="Alide2_0538" /inference="similar to AA sequence:KEGG:Daci_1221" /note="KEGG: dac:Daci_1221 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386470.1" /db_xref="GI:330823167" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481559" /translation="MDRRAFLASALAATATSAAWANSFPSRPVRVISPYAAGGGPDVQ LRQTGPSLGEVLGQSIVIENKVGAAGVLAAQYVAQQPADGYTCLLGSNTHLIQKLLQP GLRFDPIGDFAPVSNLMSSPTVLVVRADAPWRTAQELIAALKAQPAQANYGSGGIGTS AHLAGATLASLAGLQVTHIPLKGSVEIAASLIRGDTQYAFPVAGTGIPQVQGGKLRAL AVTSRKRLSQLPDVPTLQEVLNNELAVQESWFGLWAPAKTPPAVLDTLNAAVRKVAAQ PALRAAFEAVGNEATASASPQAFADFVRSENRKWAEIIQLAGITANS" sig_peptide 562061..562126 /locus_tag="Alide2_0538" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 at residue 22" misc_feature 562130..563017 /locus_tag="Alide2_0538" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 562196..563017 /locus_tag="Alide2_0538" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 563052..564302 /locus_tag="Alide2_0539" /db_xref="GeneID:10481560" CDS 563052..564302 /locus_tag="Alide2_0539" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: dac:Daci_1222 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386471.1" /db_xref="GI:330823168" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10481560" /translation="MDKPLQGVRVVDMSHVIAGPLASHYLAQLGAEVIKIEPPGGEVM RNSHAPGEKNEGGLPSGFVALNAGKRSLAVDIRQPEGADIVRALARTADVFIENFRPG VVARYGLGYEDIRALRPDVVYCSISGFGQQGDWARRGAYDHVVQALTGMMMMAGDDEH APPVKVGFPVIDVAVGMLGALSITAALHKRNAGTPGARAGQHIDASMLQASMMLMYPH ACTYLTHGTEPRRVGNRGYTGSPAADTYRCADGWLSTAANTPAQFRLLAGVLGLEALC DDAALLDIDAFNAPQGGFVVARDLPALQERLRAAFAGRSAADMEARLNAVGVPAARVR RLGEFLDEARDTGALRPVRYGAQGSDVQTPGLGFRLGGCEPAPQTPAPGLGQHGHALL QELGIEDAVIEQLHRNGVLGGAHH" misc_feature 563052..564284 /locus_tag="Alide2_0539" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 564335..565321 /locus_tag="Alide2_0540" /db_xref="GeneID:10481561" CDS 564335..565321 /locus_tag="Alide2_0540" /inference="protein motif:TFAM:TIGR02823" /note="KEGG: dac:Daci_1223 quinone oxidoreductase; TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like" /codon_start=1 /transl_table=11 /product="YhdH/YhfP family quinone oxidoreductase" /protein_id="YP_004386472.1" /db_xref="GI:330823169" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="InterPro:IPR014188" /db_xref="GeneID:10481561" /translation="MFKALLLTQPAPRETHAECVEIDESRLPEGTVRVAVSHSTLNYK DALAITGRSPVVRQFPMVPGIDFAGTVIDSEDERFRPGDAVLLNGWGVGETHWGGLAQ QARVNGDWLIRRPEAFSAQDVMAIGTAGYTAMLCVMALQDRGVAPADGPVLVTGANGG VGSIAVALLARLGFEVHASTGRPEQAAHLQALGAAQIVERGSLDAPGKPLQKERWAAA VDSVGSHTLANVCASVRYGGCVAACGLAQGMDLPATVAPFILRGVSLLGIDSVYAPVQ RRERAWQRLAQELPREVLQRNTEVAGLADVVALAPRLLAGQVRGRVVVDTAR" misc_feature 564338..565309 /locus_tag="Alide2_0540" /note="Yhdh putative quinone oxidoreductases; Region: MDR_yhdh; cd08288" /db_xref="CDD:176248" misc_feature 564341..565309 /locus_tag="Alide2_0540" /note="putative quinone oxidoreductase, YhdH/YhfP family; Region: oxido_YhdH; TIGR02823" /db_xref="CDD:163033" misc_feature order(564458..564463,564716..564721,564728..564730, 564800..564802,564806..564817,564872..564880, 564932..564934,564995..565000,565061..565075, 565136..565147,565271..565273,565280..565282, 565286..565288) /locus_tag="Alide2_0540" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176248" misc_feature order(564959..564961,565040..565042,565058..565069, 565085..565087,565091..565102,565106..565114, 565118..565141,565148..565153) /locus_tag="Alide2_0540" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176248" gene 565377..566936 /locus_tag="Alide2_0541" /db_xref="GeneID:10481562" CDS 565377..566936 /locus_tag="Alide2_0541" /EC_number="6.2.1.26" /inference="protein motif:PRIAM:6.2.1.26" /note="KEGG: reh:H16_B1709 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="YP_004386473.1" /db_xref="GI:330823170" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10481562" /translation="MNHLHTGGTMAAQHRSAFRAFAGREALVGGGVRWSYAGLAERCH RMARYFQSLGLGRQDGIAMLAGNTPEAVVVVIAAQLLGLRYTALHPMGALEDQGFVLR DAGIRLLVVDGARFAGRGAELAALGIARTVVSLGPAPFGADAVAASAAFDGSETPIEV QPDDVHKISYTGGTTGRSKGVVHRQRTALTMLLQQLGGWEWPAPARCLVATPISHAGG SLVLPTLLRGGTLVLADKFSPASLLQTVQDERISVTFLVPTQIYALLDCADRARYDLS SLQLVLYGAAPIAPARLAEALRVFGPIFGQIYGQAEAPMTIAYLRRDEHDPQRPALLQ SCGRPLPGNEVRLLDAQLREVPPGEVGELCVRGPLVMDGYLNRPEETAKALAGDWLHT GDMARMDEQGYLYLVDRAKDMIITGGFNVYSTEVEACLALHPAVAQSAVIGIPNAKWG EAVLAVVVPRPGAACPEPQELMAFVQRHKGPVLAPKAVQFAEALPLTPLGKVDKKTLR AQFWQGQERLV" misc_feature 565377..566933 /locus_tag="Alide2_0541" /note="acyl-CoA synthetase; Validated; Region: PRK06188" /db_xref="CDD:180454" misc_feature <565884..566909 /locus_tag="Alide2_0541" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(566953..567405) /locus_tag="Alide2_0542" /db_xref="GeneID:10481563" CDS complement(566953..567405) /locus_tag="Alide2_0542" /inference="protein motif:HAMAP:MF_00009" /note="TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: ajs:Ajs_3702 hypothetical protein; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted" /codon_start=1 /transl_table=11 /product="metalloprotease ybeY" /protein_id="YP_004386474.1" /db_xref="GI:330823171" /db_xref="InterPro:IPR002036" /db_xref="GeneID:10481563" /translation="MALNHLTLSLQFARDASTHRAALPRHKVARWIRHALAVDAEITV RIVGSEEGRRLNREFRRKDYATNVLTFDYQQEPTVLADLVLCAPVVEREAREQGKTLQ EHYAHLLVHGALHAQGWDHETGEQDAQEMEAYETEIMRELGFADPYAG" misc_feature complement(566959..>567390) /locus_tag="Alide2_0542" /note="Uncharacterized protein family UPF0054; Region: UPF0054; cl00402" /db_xref="CDD:185971" gene complement(567457..568407) /locus_tag="Alide2_0543" /db_xref="GeneID:10481564" CDS complement(567457..568407) /locus_tag="Alide2_0543" /inference="protein motif:PFAM:PF02562" /note="PFAM: PhoH-like protein; KEGG: dia:Dtpsy_0492 PhoH family protein" /codon_start=1 /transl_table=11 /product="PhoH family protein" /protein_id="YP_004386475.1" /db_xref="GI:330823172" /db_xref="GO:0005524" /db_xref="InterPro:IPR003714" /db_xref="GeneID:10481564" /translation="MILRHTFTPHNNLRLSHLCGPADVHLRTIEAALQVKIAHRHEQF KVDGPKARAAQAMELLQALYEMADHPIKEDHLQLMLAGDASMMDEEDSPAPLTTRRAD LRARTPTQSLYLHNIATHDITFGIGPAGTGKTYLAVACAVDALERNAVQRIVLTRPAV EAGERLGFLPGDLTQKVDPYLRPLYDALYELMGFDRVQKAFERNALEIAPLAFMRGRT LNNAFVILDEAQNTTPEQMKMFLTRIGFGARAVVTGDVSQIDLPKGSLSGLIDAERVL KRVKGIAVTRFTSADVVRHPLVARIVDAYDAQRSRRGTGE" misc_feature complement(567484..568392) /locus_tag="Alide2_0543" /note="Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702" /db_xref="CDD:31888" misc_feature complement(567490..568080) /locus_tag="Alide2_0543" /note="PhoH-like protein; Region: PhoH; cl12134" /db_xref="CDD:196351" gene 568455..569027 /locus_tag="Alide2_0544" /db_xref="GeneID:10481565" CDS 568455..569027 /locus_tag="Alide2_0544" /inference="protein motif:TFAM:TIGR00084" /note="TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; KEGG: dia:Dtpsy_0493 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding motif, class 1" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvA" /protein_id="YP_004386476.1" /db_xref="GI:330823173" /db_xref="GO:0003678" /db_xref="InterPro:IPR000085" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR011114" /db_xref="InterPro:IPR013849" /db_xref="GeneID:10481565" /translation="MIGKLTGALLEKNPPEVLLDCHGVGYEVLVPMSTFYNLPAVGQP VSLLTQFIVREDAQLLYGFATQQERQAFRELIKVSGVGPRTALSILSGLGVADLAQAV SLQEAGRLVKVPGIGKKTAERLLLELKGKLGADMGGRPHAASADQADILQALLALGYN DKEAAAALKGLPADVGVSEGIKLALKSLAR" misc_feature 568455..569021 /locus_tag="Alide2_0544" /note="Holliday junction DNA helicase RuvA; Reviewed; Region: ruvA; PRK00116" /db_xref="CDD:178876" misc_feature 568455..568640 /locus_tag="Alide2_0544" /note="RuvA N terminal domain; Region: RuvA_N; pfam01330" /db_xref="CDD:110340" gene 569065..570546 /locus_tag="Alide2_0545" /db_xref="GeneID:10481566" CDS 569065..570546 /locus_tag="Alide2_0545" /inference="similar to AA sequence:KEGG:Dtpsy_0494" /note="KEGG: dia:Dtpsy_0494 endoproteinase Arg-C" /codon_start=1 /transl_table=11 /product="endoproteinase Arg-C" /protein_id="YP_004386477.1" /db_xref="GI:330823174" /db_xref="GeneID:10481566" /translation="MRICTIRWAALPMALALAACGGGSGSSDSGGGGSGTPEAPAWSE RIEPYDPGKSAGVAKAAAQTSSALADPADTRAVILGPLPESIAKAAAGAPAAPGVPRQ IGQPRSVAGTASVAATAALLRWNPGPDGAQVAALRFESQGARGVRLGVLVQALPPGAV LRFYGAARDEAVEVGAQELRDVAERNARAGAADAVARTYWSPDFGGPQTTLEVQIPAA ASPAAVQLAVPGLSHFTVSPAEAEGGVTAKALGDAGSCEIDVSCDAAYLEQSRSVARM TYVDETGASFYCTGTLLNDAASSGTPYFLGANHCISTQAAASTLVTDWLLRAASCGGG VNSGAWRLTGGATLLYASAATDTSFMRLNRQAPAGIVYAGSYYGGVPVGTALASVHHP EGDLQKLSLGTLRRYGNCSGGSCGASDSGSGGFLVLDWQQGSTERGSSGAAAFITIGE QRYVTGQLYGGTASCTAPTGVDYFGRFDLSYRAALYKWLKPGG" sig_peptide 569065..569154 /locus_tag="Alide2_0545" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.907) with cleavage site probability 0.417 at residue 30" gene complement(570560..573364) /locus_tag="Alide2_0546" /db_xref="GeneID:10481567" CDS complement(570560..573364) /locus_tag="Alide2_0546" /inference="similar to AA sequence:KEGG:Ajs_3698" /note="KEGG: ajs:Ajs_3698 DnaK-related protein" /codon_start=1 /transl_table=11 /product="DnaK-like protein" /protein_id="YP_004386478.1" /db_xref="GI:330823175" /db_xref="GeneID:10481567" /translation="MTAATGSHARHAVGIDLGTSHTVVAHVPLDGSAADIALLAIPQR VSAAEVQAQPLLPSVRYQAAPGELGDAWRAPWPPLDATEEAPATIGRWARELGAAVPA RLVGSSKSWLSHPGVDRTAPILPWGAPEGVDKVSPLAASASYLAHVKAAWDAFQPDAP LHRQAVVLTVPASFDEGARTLTLEAARLAGLPAVQLLEEPKAAFHDWLVLQGDALAAR LASSRLVLVVDVGGGTTDLTLIRVEPSPGGLPTLTRTAVGEHLMLGGDNMDLALAHQL EPQFSTGAGERLPAARFAQLVQRCRQAKEQLLAAAAPESATVTLLGGGSKLLAQARSA TLTRAQVLQCVVDGFLPPARLTDAPARRQGALRGLGLPYPADAAISRHLAQFLARHAG GELPDTVLLNGGVFHAHALAERLTQLLGEWRGSPVRVLHNPHPDWAVARGAAAHGLAQ YQSNQPRGHAGQTSTTPKTIVPRIGGGAARSYWLVLPGKAGAAPQGVCLLPRGTEEGT RLTLAGRRFALQLGQPVRFALVARSQGQAQAGQIASLQGEGWVELPPLSTVLPAPEGR ATARAEVQLQACMSEVGVLELRCIDAQDAARSWLLPFAVRGAAAGPRPEGEEESEPKG QTAQAIALIERIFGNQAQQVAPKEVRQLRAALEKTLGARESWGLPLLRALFDALLERA RRRRRTAEHERAWFNLAGWCLRPGVGAELDGWRIGQVWQLHAQGLGHAGEAANWTEWW VFWRRVAAGLGEEQQMQLLESVAGCMQKTVQRGQGKAAWGSYDDMLRLFAAMEAVPWQ YRQEMGQWMLARLKRPGEPPQTWWAIGRLAARVPLAANAHKVMPPEAAQEFLDAALAQ DWRRNEHALFAAVQIARMTGDRARDLSDARRALVLDRMRATHAPARWIAMVEQVTDMD AEDQRRSLGDSLPPGLVLVG" misc_feature complement(<572252..573346) /locus_tag="Alide2_0546" /note="Molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: DnaK; COG0443" /db_xref="CDD:30792" misc_feature complement(570566..571282) /locus_tag="Alide2_0546" /note="DNA-K related protein; Region: DUF3731; pfam12531" /db_xref="CDD:152965" gene complement(573361..575253) /locus_tag="Alide2_0547" /db_xref="GeneID:10481568" CDS complement(573361..575253) /locus_tag="Alide2_0547" /inference="similar to AA sequence:KEGG:Daci_5720" /note="KEGG: dac:Daci_5720 putative heat-shock chaperone protein" /codon_start=1 /transl_table=11 /product="putative heat-shock chaperone protein" /protein_id="YP_004386479.1" /db_xref="GI:330823176" /db_xref="GeneID:10481568" /translation="MTTETIAASAGGASASARFSLGIDLGTTHCALSWVDKAASDGER VAQGVLAIPQLTAPASVEARALLPSFLYLPHESEFSPADLALPWGASQDGVVGECART RGAATPIRLVSSAKSWLCHPGVDRRAPLLPADAPPEVQRVSPLAASTRYLQHLRRAWT EAHPDAPFDAQDVTVTIPASFDPAARELTAEACKAAGFQRLTLLEEPQAALYSWIQAS AGAWRKQVAHGDVILVVDVGGGTTDLSLIAVLERGGNLELQRVAVGEHILLGGDNMDL ALAYGVARKLAQEGRQLDAWQTRALAHGCRAAKEQLLQDESLQSVPVVVPSRGSKLVG GSLRTEVTRAEVLQLLVEGFFPRVSVADRPQTRARAALTQLGLPYAQDAAVTRHLAAF LSRQTGATGQIEGLQGTQAQGASFLHPTAILFNGGVLKAPQIEQRILEVVNGWLAAEG APPARLLAGANLDLAVARGAAYYGHVAASGRGVRIRGGTAQSYYVGVESNMPAVPGME PPISALCLAPFGMEEGSEVALDAQEFGLVVGEPVRLRFFGSSVRRNDTVGTLLDFWGP EELVELQEIEAHLPAEGRTPGEVVPVTLHARVTGIGTLELDAVPVGGSERWKVEFDVR ADTPAA" misc_feature complement(573367..575202) /locus_tag="Alide2_0547" /note="Molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: DnaK; COG0443" /db_xref="CDD:30792" gene complement(575250..575855) /locus_tag="Alide2_0548" /db_xref="GeneID:10481569" CDS complement(575250..575855) /locus_tag="Alide2_0548" /inference="similar to AA sequence:KEGG:Daci_5721" /note="KEGG: dac:Daci_5721 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386480.1" /db_xref="GI:330823177" /db_xref="GeneID:10481569" /translation="MTEQTPPSFFNRIAMAFALVGDARLAARVARLRGGEPLAADAPP REVRVEVPVEKIVEVRVEVPVEKVVEKRVEVPAATAALQLLGLLQREARFVDFVQEDV AGYQDAEIGAAARVVHEGCRKVLREHVTLEPVRPEAEGSRVTLPPGFDASAVRVSGNV VGQPPFTGTLAHRGWRAAAVRLPQLTDTQAAAIIAQAEVEL" misc_feature complement(575256..575576) /locus_tag="Alide2_0548" /note="Domain of unknown function (DUF2760); Region: DUF2760; pfam10816" /db_xref="CDD:151266" gene 575913..577040 /locus_tag="Alide2_0549" /db_xref="GeneID:10481570" CDS 575913..577040 /locus_tag="Alide2_0549" /inference="protein motif:HAMAP:MF_00016" /note="SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: dia:Dtpsy_0499 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal" /codon_start=1 /transl_table=11 /product="Holliday junction ATP-dependent DNA helicase ruvB" /protein_id="YP_004386481.1" /db_xref="GI:330823178" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR004605" /db_xref="InterPro:IPR008823" /db_xref="InterPro:IPR008824" /db_xref="GeneID:10481570" /translation="MLPNGHGPRRRLGDNRPRMTIHTDDFSPAPAPAPARERMVSAAP ASPQEEALERALRPKLLQEYVGQAKAREQLEIFIGAARKRSEALDHVLLFGPPGLGKT TLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLERNDVLFIDEIHRLSPVVEEILY PALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYT PEELALIVMRSASLLGTPIDDAGGAEIARRSRGTPRIANRLLRRVRDYADVKGTGRIT LDMANRALTLLDVDPQGFDVMDRKLLEAVVHRFDGGPVGLDNIAASIGEESGTIEDVI EPYLIQQGYLQRTPRGRVATLAAYRHLGVAPPRAAGGLFSE" misc_feature 576024..577007 /locus_tag="Alide2_0549" /note="Holliday junction DNA helicase RuvB; Reviewed; Region: ruvB; PRK00080" /db_xref="CDD:178847" misc_feature 576105..576557 /locus_tag="Alide2_0549" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 576195..576218 /locus_tag="Alide2_0549" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(576198..576221,576348..576350,576495..576497) /locus_tag="Alide2_0549" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 576336..576353 /locus_tag="Alide2_0549" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 576531..576533 /locus_tag="Alide2_0549" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 576780..577001 /locus_tag="Alide2_0549" /note="Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491" /db_xref="CDD:191283" gene complement(577050..577772) /locus_tag="Alide2_0550" /db_xref="GeneID:10481571" CDS complement(577050..577772) /locus_tag="Alide2_0550" /inference="protein motif:PFAM:PF02308" /note="PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter" /codon_start=1 /transl_table=11 /product="MgtC/SapB transporter" /protein_id="YP_004386482.1" /db_xref="GI:330823179" /db_xref="InterPro:IPR003416" /db_xref="GeneID:10481571" /translation="MQALHNINLAATLNTLVSLFFAFVFGSVIGLERQIRQRTAGLRT NALVAVGAAVFVDLAMRLDGAGGATRVVAYVVSGVGFLGAGAIMKEGINVTGLNTAAT LWGSAAVGACAGASLVVEAALATFFVLASNTLLRPVVNHINRRPVSEAAAEATYHVYA MCRQADQADVHERLLELLEAAQYPVRAVQKHPFGSTDTEIEAVLYATSVNAGELDGVV QRIEELPGVLQAYWNSGTEPTS" misc_feature complement(577071..577739) /locus_tag="Alide2_0550" /note="Uncharacterized membrane protein [Function unknown]; Region: SapB; COG1285" /db_xref="CDD:31476" misc_feature complement(577062..577727) /locus_tag="Alide2_0550" /note="MgtC family; Region: MgtC; cl12207" /db_xref="CDD:187193" gene complement(577828..578178) /locus_tag="Alide2_0551" /db_xref="GeneID:10481572" CDS complement(577828..578178) /locus_tag="Alide2_0551" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386483.1" /db_xref="GI:330823180" /db_xref="GeneID:10481572" /translation="MLHLIRLRALRAPAATGLTHAIAPATAACALERALLAALGQRRP HLLNHLVDQAGPQAFAQALATLEARQMVEALCLLADAPRASVCAHLPPSARRRWPTAQ ARRPRGWRALLRRA" sig_peptide complement(578086..578178) /locus_tag="Alide2_0551" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.774) with cleavage site probability 0.430 at residue 31" gene complement(578286..578480) /locus_tag="Alide2_0552" /db_xref="GeneID:10481573" CDS complement(578286..578480) /locus_tag="Alide2_0552" /inference="similar to AA sequence:KEGG:CtCNB1_4283" /note="KEGG: ctt:CtCNB1_4283 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386484.1" /db_xref="GI:330823181" /db_xref="GeneID:10481573" /translation="MTAFRHHAPRRLPPRMSAPCTAQPPAALPALEQALDLDARTVWP THRIRSFLSTQAAPAHCKPR" gene complement(578824..579987) /locus_tag="Alide2_0553" /db_xref="GeneID:10481574" CDS complement(578824..579987) /locus_tag="Alide2_0553" /inference="protein motif:PFAM:PF01168" /note="PFAM: Alanine racemase, N-terminal; KEGG: dia:Dtpsy_0501 alanine racemase domain protein" /codon_start=1 /transl_table=11 /product="alanine racemase domain-containing protein" /protein_id="YP_004386485.1" /db_xref="GI:330823182" /db_xref="InterPro:IPR001608" /db_xref="GeneID:10481574" /translation="MKSTPEHAAIGLRADQIDTPAAVIDLDAMERNIQRMAAFARQNQ VRWRPHAKMHKSAAIALLLEQAGACGHCVQKTSEAEALAAGGVRDLFISNEVIAPAKL LRVARLAARLAADGGRLAIAVDSPEGIARLAGAMDAAGSDAGIDVLVEIDVGQGRCGV PPGPEAVALARAVAARPRLRFAGLHAYQGGAQHLRATAERRAAIAHAVHAAAGTRALI EAAGLPVPLVTGAGTGTLAHEATSGVYDELQAGSFLFMDADYAANEPDTTQPAFEHAL FIKTQVISTHPTHAVCDAGHKSHAIDSGLPLVHGLAPAHALHYANGGDEHGILHAAGP QARLPALGQTLWLIPGHCDPTVNLHDRLLGVRGGLEHGVVERVIGVDARGALT" misc_feature complement(578857..579957) /locus_tag="Alide2_0553" /note="Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]; Region: COG3616" /db_xref="CDD:33415" misc_feature complement(578836..579945) /locus_tag="Alide2_0553" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase; Region: PLPDE_III_LS_D-TA; cd06819" /db_xref="CDD:143493" misc_feature complement(order(578890..578892,579097..579102, 579109..579111,579115..579117,579121..579123, 579133..579141,579511..579522,579595..579597, 579607..579609,579616..579618,579670..579672, 579736..579738,579754..579759,579763..579768, 579826..579828,579832..579834,579931..579933)) /locus_tag="Alide2_0553" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143493" misc_feature complement(order(579100..579102,579232..579243, 579289..579294,579427..579429,579517..579519, 579538..579540,579709..579711,579772..579774, 579832..579834,579838..579840)) /locus_tag="Alide2_0553" /note="active site" /db_xref="CDD:143493" misc_feature complement(order(579232..579243,579289..579294, 579427..579429,579538..579540,579709..579711, 579772..579774,579832..579834,579838..579840)) /locus_tag="Alide2_0553" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143493" misc_feature complement(order(579232..579234,579427..579429, 579517..579519,579832..579834)) /locus_tag="Alide2_0553" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143493" misc_feature complement(579832..579834) /locus_tag="Alide2_0553" /note="catalytic residue [active]" /db_xref="CDD:143493" gene complement(579971..580618) /locus_tag="Alide2_0554" /db_xref="GeneID:10481575" CDS complement(579971..580618) /locus_tag="Alide2_0554" /inference="protein motif:PFAM:PF00300" /note="KEGG: dia:Dtpsy_0502 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase" /protein_id="YP_004386486.1" /db_xref="GI:330823183" /db_xref="InterPro:IPR013078" /db_xref="GeneID:10481575" /translation="MNQATRIIAIRHGETAWNVDTRIQGHLDIPLNDTGLWQARQVGQ ALADEPVAAIYSSDLLRAWATAQAVAQATGAPLNPERGLRERSFGSFQGRTFEQIERE VPEQALRWRKRDPDFAPDGGGESLTMLRERIACTVHQIAARHSGQQIVLVAHGGVMDV LYRLATHLDLQAPRTWQLTNAAINRLLWTGDHGLALVGWADTQHLEDSSRDEIHS" misc_feature complement(580022..580603) /locus_tag="Alide2_0554" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature complement(order(580154..580159,580436..580438, 580583..580588)) /locus_tag="Alide2_0554" /note="catalytic core [active]" /db_xref="CDD:132718" gene complement(580626..581240) /locus_tag="Alide2_0555" /db_xref="GeneID:10481576" CDS complement(580626..581240) /locus_tag="Alide2_0555" /inference="similar to AA sequence:KEGG:Dtpsy_0504" /note="KEGG: dia:Dtpsy_0504 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386487.1" /db_xref="GI:330823184" /db_xref="GeneID:10481576" /translation="MTYMRHLCTLVLCAAIGLLAGCAGPRLVESDVSSFSTLTTLPSP PTYRIERLPSQQAHEATFAPIQAQAEAALARVGLRRDDANPRLIAQLGAEGGYATPRY WSNYGPDPFYGRWGWGWGYGGRWGWGMNWMMDSPPTLYHRRVSLVLRDAASQQVVYET SAVYEDVWTSDPAIYGVLFDQALTDFPRPPQGPRKLRTELTPQP" sig_peptide complement(581154..581240) /locus_tag="Alide2_0555" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.553 at residue 29" gene complement(581414..582346) /locus_tag="Alide2_0556" /db_xref="GeneID:10481577" CDS complement(581414..582346) /locus_tag="Alide2_0556" /inference="protein motif:HAMAP:MF_01850" /note="KEGG: dia:Dtpsy_0505 PP-loop domain protein; HAMAP: 2-thiocytidine tRNA biosynthesis protein, TtcA; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase" /codon_start=1 /transl_table=11 /product="tRNA 2-thiocytidine biosynthesis protein TtcA" /protein_id="YP_004386488.1" /db_xref="GI:330823185" /db_xref="InterPro:IPR011063" /db_xref="InterPro:IPR012089" /db_xref="GeneID:10481577" /translation="MNATLNAADWIGEEPATDNRKIEREQIKLEKRLCREVGRAILDF NMIEEGDRIMVCMSGGKDSYTLLDILRRLQKRAPVKFDIVAVNLDQKQPGFPEHVLPD YFKSIGVEYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADELGCTKLALGH HRDDIVATLMLNMFYGGRMKGMPPKLVSDDGRHVVIRPLCYVPEKDTARWAQYQQFPI IPCNLCGSQEGLQRVVVGEMLREWDKKFPGRIESMLRAMGHVVTTHLMDPKLHDFRNA KATGIADPDGDTAFDHEEFPAAPGLPGMQVVQIG" misc_feature complement(581510..582283) /locus_tag="Alide2_0556" /note="tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional; Region: PRK10696" /db_xref="CDD:182655" misc_feature complement(581666..582193) /locus_tag="Alide2_0556" /note="This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This...; Region: Alpha_ANH_like_II; cd01993" /db_xref="CDD:30180" misc_feature complement(order(582080..582082,582086..582088, 582158..582169,582173..582181)) /locus_tag="Alide2_0556" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30180" gene complement(582351..582743) /locus_tag="Alide2_0557" /db_xref="GeneID:10481578" CDS complement(582351..582743) /locus_tag="Alide2_0557" /inference="protein motif:TFAM:TIGR00526" /note="TIGRFAM: Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; KEGG: dia:Dtpsy_0506 dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="YP_004386489.1" /db_xref="GI:330823186" /db_xref="GO:0004150" /db_xref="InterPro:IPR006157" /db_xref="GeneID:10481578" /translation="MTEFFYHSRPGEGRQALTLTGLRFHANLGILDHEKTAPQPIQVD AELNLGPQPLAPRDDDIRHVLDYRKVRQIIIDECTAEHVNLLESLIGKLAQRLMHLPG VLGVRVKIAKLEIFDDCEVAIRVETGQW" misc_feature complement(582372..582704) /locus_tag="Alide2_0557" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" misc_feature complement(order(582375..582377,582414..582416, 582621..582623,582627..582629)) /locus_tag="Alide2_0557" /note="active site" /db_xref="CDD:29764" gene complement(582748..583161) /locus_tag="Alide2_0558" /db_xref="GeneID:10481579" CDS complement(582748..583161) /locus_tag="Alide2_0558" /inference="protein motif:PFAM:PF02152" /note="KEGG: dia:Dtpsy_0507 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="YP_004386490.1" /db_xref="GI:330823187" /db_xref="GO:0004150" /db_xref="InterPro:IPR006157" /db_xref="GeneID:10481579" /translation="MNSILLAFGAIDARLATGCRALSLRRHEAAVRIGVHAHERLAAQ RMWFDVDLCVKLDHAPAARDHISETLDYDFIRDVIAREVGSQHHELQESLCDAIAAAL LQSPGVHAVRVATRKPDIYPDSASIGVERVCIKPW" misc_feature complement(582769..583092) /locus_tag="Alide2_0558" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" misc_feature complement(order(582775..582777,582817..582819, 583024..583026,583030..583032)) /locus_tag="Alide2_0558" /note="active site" /db_xref="CDD:29764" gene complement(583158..583964) /locus_tag="Alide2_0559" /db_xref="GeneID:10481580" CDS complement(583158..583964) /locus_tag="Alide2_0559" /inference="protein motif:PFAM:PF00106" /note="PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bge:BC1002_2951 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_004386491.1" /db_xref="GI:330823188" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481580" /translation="MSESVQQDDWVLVTGAAHRLGREICLAFAAAGWNVLCHYRASQA GAQDTQAAVQALGRACLLVQADLAQPQAGTQLLDQCVALTGQAPRCIVNNASIFEADD ARTASAQGLVRHFLTNTATPLLLGNALSAWLRAQGRPATGGYSVVHVLDQKVHNLNPD YFSYTVSKLALERSVALQAQALAPHVRVCGLSPGLIYLSGPQTQDNFDRAAQVNLLRK RIEPADVARCAVFIAGNASLNGCTLQADNGQHLVPLERDVMFAITENPRP" misc_feature complement(583221..583937) /locus_tag="Alide2_0559" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(583212..583934) /locus_tag="Alide2_0559" /note="dihydromonapterin reductase; Provisional; Region: PRK06483" /db_xref="CDD:180586" misc_feature complement(order(583377..583388,583461..583463, 583473..583475,583512..583520,583677..583685, 583842..583850,583905..583907,583911..583916, 583920..583922)) /locus_tag="Alide2_0559" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(583461..583463,583473..583475, 583512..583514,583611..583613)) /locus_tag="Alide2_0559" /note="active site" /db_xref="CDD:187535" gene 584103..585188 /locus_tag="Alide2_0560" /db_xref="GeneID:10481581" CDS 584103..585188 /locus_tag="Alide2_0560" /inference="protein motif:PFAM:PF02636" /note="PFAM: Protein of unknown function DUF185; KEGG: dia:Dtpsy_0510 protein of unknown function DUF185" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386492.1" /db_xref="GI:330823189" /db_xref="InterPro:IPR003788" /db_xref="GeneID:10481581" /translation="MTTPTDALFQHIRQDLAAAGGWIGFDRFMQLALYTPGLGYYAGG LRKLGSMPEDGSDFVTAPELSPVFGKVLAAQVREALDATGTDEVWEFGAGSGALAGQL LEALGERVRRYTIVDLSGSLRARQQERLAAHAGRVHWAERLPAAIEGVVVGNELLDAM PVQLLHRVQGAWHERGVALDAGGALAWSDRPTALRPPVEIEGGHDYLTEIHPQGEAFM RTLGERLARGAALLIDYGFGEDEYYHPQRHMGTVMCHRAHRADDDPLADVGEKDITAH VNFTAMALAAQDAGLNVLGYTSQARFLLNCGLLQEMERLTLAQRALAAKLMLEHEMGE LFKVLAVGPGEPWTPVGFAQGDRTHRL" misc_feature 584118..585137 /locus_tag="Alide2_0560" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1565" /db_xref="CDD:31753" misc_feature <584436..584993 /locus_tag="Alide2_0560" /note="Uncharacterized ACR, COG1565; Region: DUF185; pfam02636" /db_xref="CDD:145672" gene 585215..585619 /locus_tag="Alide2_0561" /db_xref="GeneID:10481582" CDS 585215..585619 /locus_tag="Alide2_0561" /inference="protein motif:PFAM:PF00903" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4030 hypothetical protein" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004386493.1" /db_xref="GI:330823190" /db_xref="InterPro:IPR004360" /db_xref="GeneID:10481582" /translation="MSLKIDRFDHIVLNVADVQASADWYARVLGMEREEFASRTGPRV AMKFGRQKINLRPVGEDAVAWFTGVNPTPGSDDLCFVTEQTADEVLAHFAAVGVVPEV GPVERTGALGPMTSVYCRDPDGNLIEVASYGG" misc_feature 585227..585610 /locus_tag="Alide2_0561" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_2; cd07253" /db_xref="CDD:176676" misc_feature order(585227..585250,585299..585304,585356..585370, 585428..585463,585476..585481,585488..585490, 585515..585517,585536..585547,585572..585574, 585581..585586,585590..585592,585596..585598, 585608..585610) /locus_tag="Alide2_0561" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176676" misc_feature order(585242..585244,585443..585445,585596..585598) /locus_tag="Alide2_0561" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176676" gene 585623..585817 /locus_tag="Alide2_0562" /db_xref="GeneID:10481583" CDS 585623..585817 /locus_tag="Alide2_0562" /inference="similar to AA sequence:KEGG:Dtpsy_0515" /note="KEGG: dia:Dtpsy_0515 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386494.1" /db_xref="GI:330823191" /db_xref="GeneID:10481583" /translation="MLRWVIAVFLALVLINGLTPWLKRLGLGRLPGDFQFRLFGRDWF IPLTSTLLLSFLLSMLVKWL" misc_feature 585623..>585760 /locus_tag="Alide2_0562" /note="Protein of unknown function (DUF2905); Region: DUF2905; pfam11146" /db_xref="CDD:192711" gene 585960..586919 /locus_tag="Alide2_0563" /db_xref="GeneID:10481584" CDS 585960..586919 /locus_tag="Alide2_0563" /inference="protein motif:PFAM:PF00480" /note="PFAM: ROK; KEGG: ajs:Ajs_0500 glucokinase" /codon_start=1 /transl_table=11 /product="ROK family protein" /protein_id="YP_004386495.1" /db_xref="GI:330823192" /db_xref="InterPro:IPR000600" /db_xref="GeneID:10481584" /translation="MLAGVDLGGTKVAVCLAMPSGAGEPPALLARLSEPTVKTGEADA LARQVLRLLDAACAAQGLTRGDVAAVGVASCGPFVRRAGRVEVSNPNICGGLAGAPRG LGNGWTCVPLEAPLARAMGEGRVQVANDAVAALAAERRWGALRGVDDCAYVTWSTGIG VGLCVDGRVLRGKNGNAGHAGHSFVGDVAGEPPLCGCGNRGDVESLVAGNALPRRLGL QAQALLDAAARGDAAALAQVRGLCALMGRLFYNLVATLDLRRISIGGAVFLHHEALLL PLLRAELVRHFAVLTDGVELVRAGLGERVGDYAALALLDSSSA" misc_feature 585969..586586 /locus_tag="Alide2_0563" /note="FGGY family of carbohydrate kinases, N-terminal domain; Region: FGGY_N; cl09121" /db_xref="CDD:195797" gene complement(586880..588271) /locus_tag="Alide2_0564" /db_xref="GeneID:10481585" CDS complement(586880..588271) /locus_tag="Alide2_0564" /EC_number="2.4.1.15" /inference="protein motif:PRIAM:2.4.1.15" /note="KEGG: ajs:Ajs_0501 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: Glycosyl transferase, family 20" /codon_start=1 /transl_table=11 /product="alpha,alpha-trehalose-phosphate synthase" /protein_id="YP_004386496.1" /db_xref="GI:330823193" /db_xref="InterPro:IPR001830" /db_xref="GeneID:10481585" /translation="MSRLVVVSNRLADPRKPAAGGLAVALGDALARTGGLWFGSSGAT AADLAPGEGRLRTRQAGKVLLASVDLCAEDHAAYYQGYANSVLWPVFHYRLDLAQFDP AYLVGYRRVNQMFARKLLPLLRESDLIWVHDYHLIPLAAELRALGCRQRIGFFLHIPV PPPLVMAALPQHEWLMRSFFAYDLVGLQSEADVDHFTRSMVTEAGAQELGAQRLHAYG ATVRVAAFPIGIDVEEFQALAAAPDAVHTFEALRAEYSRRQLLLGIDRLDYSKGIPQR VRAFRQLLERYPENRNSATLVMIASPSRDDVHAYADLRQELEGLCGAINGDYGTLDWM PLRYIHRTVARRRVPGLCRAARVGLVTPLRDGMNLVAKEYVVAQDEADPGVLVLSRFA GAAEQLEEALLVNPYDTQGMAGAIQAALHMPLAERQWRHQRLLERIRRHDVHWWRQGF LQALEESSSASAA" misc_feature complement(586916..588265) /locus_tag="Alide2_0564" /note="Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is...; Region: GT1_TPS; cd03788" /db_xref="CDD:99963" misc_feature complement(586916..588265) /locus_tag="Alide2_0564" /note="alpha,alpha-trehalose-phosphate synthase [UDP-forming]; Region: trehalose_OtsA; TIGR02400" /db_xref="CDD:162840" misc_feature complement(order(587153..587155,587162..587167, 587228..587230,587459..587461,587474..587476, 587801..587803,587867..587869,587873..587875, 588035..588037,588209..588214,588242..588244)) /locus_tag="Alide2_0564" /note="active site" /db_xref="CDD:99963" misc_feature complement(587471..587497) /locus_tag="Alide2_0564" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:99963" gene complement(588268..590070) /locus_tag="Alide2_0565" /db_xref="GeneID:10481586" CDS complement(588268..590070) /locus_tag="Alide2_0565" /inference="protein motif:PFAM:PF00723" /note="PFAM: Glycoside hydrolase 15-related; KEGG: ajs:Ajs_0502 glycoside hydrolase 15-related" /codon_start=1 /transl_table=11 /product="glycoside hydrolase 15-like protein" /protein_id="YP_004386497.1" /db_xref="GI:330823194" /db_xref="GO:0004339" /db_xref="InterPro:IPR011613" /db_xref="GeneID:10481586" /translation="MSAPQAAAEPSLALGMVGNCAISALVDARACIVWCCMPRFDGDP VFNALLQPGDEGSRFAIALEDFAASEQWYEPNTAVLRTRLTDLHGNCLEVTDFAPRFY ARARFFRPNMLVRRVRPVRGAPRIRVLLRVLYDWGQTRPTITRGSNHVRYVGSAFALR LNTDAPVTYVLSGQPFTAQREYNFLLGADETLAEGIGDTARHCEQETIAYWKHWTQRL HLPLEWQDAVIRAAITLKMSLFEDTGAIVAAMTTSIPESARSGRNWDYRYCWLRDAFF VVRALNSLSEVGTMEDYLRWLGNVVAKAGEGHIQPLYGIGLEHELPESIVPHMAGYRG MGPVRVGNQATEHFQHDVYGNIVLGAAQAFHDRRLLHPAGSAEFARLEKIGALAVQVY GQPDAGMWELRTRARVHTSSALMSWAACDRLAKIATALGLPERARYWQLHTQQMQDEI LERSWSPARRAFAESFGGSELDASVLLMAEVGLIHPADPRFASTLDAMEKTLCDGPYM RRYEAADDFGKPETSFNICTFWRIDALARTGRGQQAREIFEAMLAVRNPLGLLSEDTH AATGEMWGNFPQTYSMVGVINAAMRLSAPWDTVI" misc_feature complement(588289..590031) /locus_tag="Alide2_0565" /note="Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]; Region: SGA1; COG3387" /db_xref="CDD:33194" misc_feature complement(588304..589395) /locus_tag="Alide2_0565" /note="Glycosyl hydrolases family 15; Region: Glyco_hydro_15; pfam00723" /db_xref="CDD:189687" gene complement(590076..590831) /locus_tag="Alide2_0566" /db_xref="GeneID:10481587" CDS complement(590076..590831) /locus_tag="Alide2_0566" /inference="protein motif:TFAM:TIGR00685" /note="KEGG: dia:Dtpsy_0519 trehalose-phosphatase; TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase" /codon_start=1 /transl_table=11 /product="trehalose-phosphatase" /protein_id="YP_004386498.1" /db_xref="GI:330823195" /db_xref="GO:0003824" /db_xref="InterPro:IPR003337" /db_xref="InterPro:IPR006379" /db_xref="GeneID:10481587" /translation="MPIPPLPTANHALFLDFDGTLADIAAQPGAVRVQPEVIDSLRDL HAALGGAMAIATGRTEADIDRFLRPLRLPLACEHGAQYRLGSGRAGGAHAIDLAAVLG ALRPLVASHPQLLVEVKSAGIALHYRQAPHLEALCLRALAQAMHRVRGAELMRGKCVL EVKPAGPSKGRAIADFMRQAPFAGRVPLFIGDDVTDEAGFAAVQALGGLGVKVGEGPT QARARLGSPGEVRDWLRAAVRALAQPVPALAGG" misc_feature complement(590130..590825) /locus_tag="Alide2_0566" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature complement(590151..590792) /locus_tag="Alide2_0566" /note="Trehalose-phosphatase; Region: Trehalose_PPase; pfam02358" /db_xref="CDD:145482" gene 590974..591420 /locus_tag="Alide2_0567" /db_xref="GeneID:10481588" CDS 590974..591420 /locus_tag="Alide2_0567" /EC_number="1.8.1.8" /inference="protein motif:TFAM:TIGR01068" /note="TIGRFAM: Thioredoxin; Zinc finger/thioredoxin putative; KEGG: dia:Dtpsy_0520 thioredoxin; PFAM: Thioredoxin domain" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="YP_004386499.1" /db_xref="GI:330823196" /db_xref="GO:0009055" /db_xref="GO:0015035" /db_xref="InterPro:IPR005746" /db_xref="InterPro:IPR011723" /db_xref="InterPro:IPR013766" /db_xref="GeneID:10481588" /translation="MAPMTTEALHIVCPHCHTTNRVQAAQLGSAPDCGSCHRPLFTGE PLALDAATFDRHVGRSHVPVVVDFWAPWCGPCRQMAPAFAQAARTLEPHVRLAKLDTE AHPQIAGRYGIRSIPTMILFKGGREAARVSGALGAADIARWVNSVG" misc_feature 590998..591408 /locus_tag="Alide2_0567" /note="thioredoxin 2; Provisional; Region: PRK10996" /db_xref="CDD:182889" misc_feature 591124..591408 /locus_tag="Alide2_0567" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature order(591190..591192,591199..591201) /locus_tag="Alide2_0567" /note="catalytic residues [active]" /db_xref="CDD:48496" gene complement(591409..592656) /locus_tag="Alide2_0568" /db_xref="GeneID:10481589" CDS complement(591409..592656) /locus_tag="Alide2_0568" /EC_number="2.7.7.21" /EC_number="2.7.7.25" /inference="protein motif:HAMAP:MF_01261" /note="HAMAP: tRNA nucleotidyltransferase, proteobacteria; KEGG: dia:Dtpsy_0521 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain" /codon_start=1 /transl_table=11 /product="polynucleotide adenylyltransferase/metal dependent phosphohydrolase" /protein_id="YP_004386500.1" /db_xref="GI:330823197" /db_xref="InterPro:IPR002646" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR012006" /db_xref="GeneID:10481589" /translation="MQIYMVGGAVRDRLLGRPVNDHDWVVVGARPEDMVARGFVPVGR DFPVFLHPETHEEYALARTERKSGRGYRGFVVQASPDVTLEEDLSRRDLTINAIAASA DWIGAEGLFDPYGGARDLERRVLRHVTDAFREDPVRILRVARFAARFTDFTVAPETMA LMREMVQAGEANHLVAERVWQELSRGLMEEKPSRMFDVLRACGALAVVLPEVERLWGV PQRPEHHPEVDTGVHLMMVLDMAARLSAPLAVRFACLTHDLGKGTTPADVLPRHIGHE QRSGKLLKAVAERLRVPVDCRELADVVAREHGNIHRSGELGAAALVRLLERCDAIRKP ARLDDILLACECDARGRLGFEDAPYPQRARLNAALAAVQSVATSVIAACAASMGVTGQ KVGEMIHAARVQAVADWLATLAD" misc_feature complement(591412..592656) /locus_tag="Alide2_0568" /note="multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed; Region: cca; PRK10885" /db_xref="CDD:182810" misc_feature complement(592291..592656) /locus_tag="Alide2_0568" /note="Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398" /db_xref="CDD:143388" misc_feature complement(order(592369..592371,592378..592389, 592471..592473,592486..592488,592519..592521, 592588..592590,592594..592596,592621..592626, 592633..592638)) /locus_tag="Alide2_0568" /note="active site" /db_xref="CDD:143388" misc_feature complement(order(592369..592371,592381..592389, 592588..592590,592594..592596,592624..592626, 592633..592638)) /locus_tag="Alide2_0568" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143388" misc_feature complement(order(592486..592488,592588..592590, 592594..592596)) /locus_tag="Alide2_0568" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143388" misc_feature complement(592012..592206) /locus_tag="Alide2_0568" /note="Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627" /db_xref="CDD:193105" misc_feature complement(<591634..591960) /locus_tag="Alide2_0568" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene 592723..593706 /locus_tag="Alide2_0569" /db_xref="GeneID:10481590" CDS 592723..593706 /locus_tag="Alide2_0569" /inference="protein motif:PFAM:PF00158" /note="KEGG: axy:AXYL_01756 acetoacetate metabolism regulatory protein AtoC; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Fis family sigma54 specific transcriptional regulator" /protein_id="YP_004386501.1" /db_xref="GI:330823198" /db_xref="GO:0003700" /db_xref="GO:0005524" /db_xref="GO:0008134" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481590" /translation="MDLIGEHASIVALRQLVLRVARSKASTVLIYGETGTGKGLVARM LHRHSERCEREFIDINCAAIPGDLLESELFGYERGAFTGAAGKKEGLIESANGGTVFL DEIRELDPVMQAKILTLLDTRRFRRLGSVHPISVDVRFIAATNRILLSEVKDGKFRDD LYYRLQVIAINIPPLRERGDDIFILADRFLAKYNAVYGSTVRRLSPEVEQIFRAYQWP GNVRELENLLERICILEDGDCVEASHLPQRILREARAARPAAAGGGVPAQGYLEATAQ FQRTLIAQALARAQGHMGAAAERLALSRHALRHQMIKLGMAPARDGADQVT" misc_feature 592729..593661 /locus_tag="Alide2_0569" /note="psp operon transcriptional activator PspF; Region: phageshock_pspF; TIGR02974" /db_xref="CDD:163093" misc_feature 592756..593244 /locus_tag="Alide2_0569" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 592816..592839 /locus_tag="Alide2_0569" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(592819..592842,593029..593031,593155..593157) /locus_tag="Alide2_0569" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 593017..593034 /locus_tag="Alide2_0569" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 593212..593214 /locus_tag="Alide2_0569" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 593545..593664 /locus_tag="Alide2_0569" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene 593891..595252 /locus_tag="Alide2_0570" /db_xref="GeneID:10481591" CDS 593891..595252 /locus_tag="Alide2_0570" /inference="similar to AA sequence:KEGG:Veis_3993" /note="KEGG: vei:Veis_3993 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386502.1" /db_xref="GI:330823199" /db_xref="GeneID:10481591" /translation="MQSLKIICPNGHLGFAPLRTESFHLGVQAGPDYIAADSGSDDVG PVPLGSDTSTSPEAWQRHDLEAMLLAARRLGVPMIIGSAGDTGSNSRVDLYVRIIREL AQKHGLKKFKLGYFYSEVDKELLRRKMRAGEAIQGLDGFADLVESELDATDRIVGMAG VHPYMELLRQGADVIIGGRSSDAAVFAAPALHHGFPADYAYYLGKVLECASFCAEPYG GKETVMGEISHGDVKVTAMLPAQRCTIASVAGHAMYERSNPYDEFFAGGRLDMRHCHY EQFDERTTRITGSRFVPSEKIRVKLEGSGKVGERYVGLCGIRDPYTIAHVDRVIEWAR EQVRARFGDGGYELHYKVYGRDGVMGELEPLRNQPGHELCVMVQGVAPTREMAEEVTL IGLRQMFYARLPDVKGTAGSVSFPLDEVLHASAAYRWTLNHTVAVDSGLELFPTHMTE AGA" misc_feature 593930..594952 /locus_tag="Alide2_0570" /note="Protein of unknown function (DUF1446); Region: DUF1446; pfam07287" /db_xref="CDD:191720" gene 595267..595587 /locus_tag="Alide2_0571" /db_xref="GeneID:10481592" CDS 595267..595587 /locus_tag="Alide2_0571" /inference="similar to AA sequence:KEGG:AXYL_01758" /note="KEGG: axy:AXYL_01758 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386503.1" /db_xref="GI:330823200" /db_xref="GeneID:10481592" /translation="MTTQKLSELAKTIRSKNAGVNKITFDIIFRDGATYERVKRSRVL TREGMAGLFRIPPERISDFVEYDPGYAIKFTIYRLRPSGSAGDGDIFGAQQYAPLLDL PIPA" gene 595625..596596 /locus_tag="Alide2_0572" /db_xref="GeneID:10481593" CDS 595625..596596 /locus_tag="Alide2_0572" /inference="similar to AA sequence:KEGG:Veis_3991" /note="KEGG: vei:Veis_3991 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386504.1" /db_xref="GI:330823201" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481593" /translation="MRHWIASLGLLAGLLSAAAAPTHAQQAAVPRLVKIVVPFSAGAS NDAIARAIAVPLARRLHTTVIVENKAGAAGVIGADAVAKSPADGSVLLLTSSTFLTAA ATQPRLPFDPVGAFAPVAMVAQGPLVLAVSGAAPFKSPADLVAAAQASPGTLTYGSAG VGSVGHLATELLGDAAHIKLLHVPYKGAANALADLAGGQIDVMIGNQSSMAALMSGGK VRPLAVTSRQAHPAFPTLAPLAATVPGYAIDIWVGVFAPAGTPAALVERYNREINEIA ASAELAAILNPDGAVPAGLTAEAFAARLRDELGMWKRLAARHRIVAE" sig_peptide 595625..595699 /locus_tag="Alide2_0572" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.965 at residue 25" misc_feature 595694..596569 /locus_tag="Alide2_0572" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 595766..596584 /locus_tag="Alide2_0572" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(596598..597368) /locus_tag="Alide2_0573" /db_xref="GeneID:10481594" CDS complement(596598..597368) /locus_tag="Alide2_0573" /inference="protein motif:PFAM:PF00149" /note="PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_0522 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004386505.1" /db_xref="GI:330823202" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10481594" /translation="MRLHILSDLHLGVQGMEHPRTDADVVVLAGDIARPEQAVAWARG FGKPVLYVPGNHEFYGASLQQTARTLRALCADGPVQLLDNRSLALRGVRFVGSTLWSD FRIAGEGQARADAMQEARRLVRDFQRIHTTEQPDAPLFSPQDAAALYDANVQWLEREL ARPFDGPTVVITHHAPSPRSIHPRFAGSPLNAIFVSDAENLVAASGARLWIHGHTHDS FDYLLHGTRVLCNPRGYGKDGMNENPLFDPALVAEVAA" misc_feature complement(596721..597368) /locus_tag="Alide2_0573" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature complement(596664..597362) /locus_tag="Alide2_0573" /note="Microscilla MS158 and related proteins, metallophosphatase domain; Region: MPP_MS158; cd07404" /db_xref="CDD:163647" misc_feature complement(order(596721..596723,596727..596729, 596850..596852,597201..597206,597276..597278, 597339..597341,597345..597347)) /locus_tag="Alide2_0573" /note="putative active site [active]" /db_xref="CDD:163647" misc_feature complement(order(596721..596723,596727..596729, 596850..596852,597204..597206,597276..597278, 597339..597341,597345..597347)) /locus_tag="Alide2_0573" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163647" gene complement(597387..598073) /locus_tag="Alide2_0574" /db_xref="GeneID:10481595" CDS complement(597387..598073) /locus_tag="Alide2_0574" /inference="protein motif:PFAM:PF02798" /note="PFAM: Glutathione S-transferase, N-terminal; KEGG: ajs:Ajs_0507 glutathione S-transferase domain-containing protein" /codon_start=1 /transl_table=11 /product="glutathione S-transferase domain-containing protein" /protein_id="YP_004386506.1" /db_xref="GI:330823203" /db_xref="InterPro:IPR004045" /db_xref="GeneID:10481595" /translation="MLQLYIGNKNYSSWSMRPWVLLRQAGIAFEEVPVRFDSFDANSQ FKRRLKAVSPTAKVPVLVDGGLTVWDSLAIAEYLAETHPDKRLWPEDRAARAHARSVT AEMHSGFTALRGHCPMNIEARLPEVGAILWRDQAGVRADVQRLADMWGELLARHGGPM LFGHFTIADAFYAPVCMRLATYALPLPRPIADYVQRVRQLPGVKAWIDGALAEQDFLD FEEPYRARRG" misc_feature complement(597453..598073) /locus_tag="Alide2_0574" /note="glutathione S-transferase; Provisional; Region: PRK15113" /db_xref="CDD:185068" misc_feature complement(597837..598067) /locus_tag="Alide2_0574" /note="GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH)...; Region: GST_N_1; cd03043" /db_xref="CDD:48592" misc_feature complement(order(597846..597851,597858..597860, 598002..598007,598014..598019,598023..598028, 598032..598034)) /locus_tag="Alide2_0574" /note="putative C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48592" misc_feature complement(order(597861..597866,597897..597905, 598032..598034)) /locus_tag="Alide2_0574" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48592" misc_feature complement(order(597846..597848,597855..597860, 597864..597869,597903..597905)) /locus_tag="Alide2_0574" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48592" misc_feature complement(597450..597800) /locus_tag="Alide2_0574" /note="GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous...; Region: GST_C_3; cd03194" /db_xref="CDD:48121" misc_feature complement(order(597540..597542,597552..597554, 597561..597566,597573..597575,597768..597770, 597789..597791)) /locus_tag="Alide2_0574" /note="putative N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48121" misc_feature complement(order(597642..597644,597777..597779, 597786..597791)) /locus_tag="Alide2_0574" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48121" misc_feature complement(order(597540..597542,597549..597551, 597741..597746,597753..597758,597768..597770)) /locus_tag="Alide2_0574" /note="putative substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48121" gene complement(598162..598734) /locus_tag="Alide2_0575" /db_xref="GeneID:10481596" CDS complement(598162..598734) /locus_tag="Alide2_0575" /inference="protein motif:TFAM:TIGR02727" /note="KEGG: dia:Dtpsy_0524 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase" /codon_start=1 /transl_table=11 /product="5-formyltetrahydrofolate cyclo-ligase" /protein_id="YP_004386507.1" /db_xref="GI:330823204" /db_xref="GO:0005524" /db_xref="GO:0030272" /db_xref="InterPro:IPR002698" /db_xref="GeneID:10481596" /translation="MDKAALRRTLVAQRLDMPDRLRRADLLQRVMRIWLVDRPDTVIG AYWPIKGEFDPLPALHRWKEDGELLDEPQRRRIGLPVVNKQHRTLTFHAWYPGCEMEE DAYGIPKPKDTEVIVPTLLFVPCVGYGPGGYRLGYGGGFYDRTLATLQPRPFTVGLGF TQGYLDDFEPEAHDMPLDAILNDNGVVWPV" misc_feature complement(598189..598728) /locus_tag="Alide2_0575" /note="5-formyltetrahydrofolate cyclo-ligase family; Region: 5-FTHF_cyc-lig; cl00360" /db_xref="CDD:193786" gene 598749..600731 /locus_tag="Alide2_0576" /db_xref="GeneID:10481597" CDS 598749..600731 /locus_tag="Alide2_0576" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase-like, catalytic; KEGG: dia:Dtpsy_0525 lytic transglycosylase catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic subunit" /protein_id="YP_004386508.1" /db_xref="GI:330823205" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10481597" /translation="MHWLKILTPLIAGAALAAAAPWAAAQNRGDDTLLEMQQAFRKGD KSRLTALLPTVRGHPLEPWAAYWELRARLDQAQSDQVNAFLQRFAGTYQEDRLRNDWL LLLGQRRDWDQFADLHPYYRMGDDREVRCYALAIDQIKGTAAEDAGAEVLSNWYALRD LDDGCSNAAAEMLAARKIKPLDVWRKARLAAEANRLRMARKAVEIVAPDALAQLREAL DSPTKYLTGRATARGKERQELVVLALVRMAMSDAGAAAGLLDSKWGVHLSAEERNWLW GLIGKQAALSLSPDALAYFGNVGRDTDLNDDMLAWKVRAALRAGQWKLVGRSIDAMSA RARQDSTWVYWKARSLTAGRASEEDRAAARQLYERIAGTTGFYEQLALEELGARVTPA PAPAPLTDAEKAAARANPGLNRALYAIALGLRSEGVREWNYTTNLHQQGGMSERELLA AADLACERQVWDRCINTSERTRDVIDVAQRFPMPYQATVVQRARGIGLDPAYVYGLIR QESRFIMDARSGVGASGLMQVMPATARWTARKIGLTGFTPQQINDRDTNITIGTAYLK LALDDFDGSMPLAAAAYNAGPGRPRNWRNGPVLDAAIWAENVPFNETRDYVKKVLANT VNYAAILTGQPQSLKSRLGLVGPRDAREPEPNKDLP" sig_peptide 598749..598820 /locus_tag="Alide2_0576" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.898 at residue 24" misc_feature 598848..600662 /locus_tag="Alide2_0576" /note="lytic murein transglycosylase; Provisional; Region: PRK11619" /db_xref="CDD:183236" misc_feature 600246..600617 /locus_tag="Alide2_0576" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(600276..600278,600336..600338,600438..600440, 600495..600497) /locus_tag="Alide2_0576" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 600276..600278 /locus_tag="Alide2_0576" /note="catalytic residue [active]" /db_xref="CDD:29556" gene complement(600794..601321) /locus_tag="Alide2_0577" /db_xref="GeneID:10481598" CDS complement(600794..601321) /locus_tag="Alide2_0577" /inference="similar to AA sequence:KEGG:Ajs_0510" /note="KEGG: ajs:Ajs_0510 cytochrome b561" /codon_start=1 /transl_table=11 /product="cytochrome b561" /protein_id="YP_004386509.1" /db_xref="GI:330823206" /db_xref="InterPro:IPR011577" /db_xref="GeneID:10481598" /translation="MRVWDAPVRLLHWGMVAAVAVAWWSSDDTGPLHENTGYVVVALL AARLAWGFRGSHYARFAQFVRAPRAALAYARAALAGHAPRYIGHNPLGGWMVLALLAD LGLLGFTGWLYTTDMFWGYGWLANLHKCLGWALLALIALHVAGMLWTSWQHRENLVRA MVTGAKAPPQGDDVV" misc_feature complement(600824..601318) /locus_tag="Alide2_0577" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene complement(601321..601593) /locus_tag="Alide2_0578" /db_xref="GeneID:10481599" CDS complement(601321..601593) /locus_tag="Alide2_0578" /inference="similar to AA sequence:KEGG:Dtpsy_0527" /note="KEGG: dia:Dtpsy_0527 putative signal peptide protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386510.1" /db_xref="GI:330823207" /db_xref="GeneID:10481599" /translation="MTTSWITRIAALALAASAGAAFAHGKVECKEYPKAEWRPHTELE KKLIQEGWTIRRMEKTDTCYEVYGKTPDGKRVEAFFDPKTFERVED" sig_peptide complement(601522..601593) /locus_tag="Alide2_0578" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.981 at residue 24" misc_feature complement(601327..>601509) /locus_tag="Alide2_0578" /note="Uncharacterized conserved protein [Function unknown]; Region: COG5591" /db_xref="CDD:35150" gene complement(601730..602413) /locus_tag="Alide2_0579" /db_xref="GeneID:10481600" CDS complement(601730..602413) /locus_tag="Alide2_0579" /inference="protein motif:HAMAP:MF_00657" /note="HAMAP: PKHD-type hydroxylase ybiX; PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_0512 putative hydroxylase; SMART: Prolyl 4-hydroxylase, alpha subunit" /codon_start=1 /transl_table=11 /product="PKHD-type hydroxylase ybiX" /protein_id="YP_004386511.1" /db_xref="GI:330823208" /db_xref="InterPro:IPR005123" /db_xref="InterPro:IPR006620" /db_xref="GeneID:10481600" /translation="MLISIDQVLTKEQVRQFRQELDAANWDDGAATAGTLAKAVKRNQ QIPDGSELTVRLGQQILRRLAQTPLFISAALPRTIYPPKFNRYAGGGTYGAHVDSALM YLPGSSQQMRTDLSATLFLAEPEEYEGGELEVEGPFGVQTVKLSAGDMVLYPSTSLHR VTPVTNGARVASFFWIESLVADESERTLLFDLDQSIQQLTPLVAPDDMRLVQLTGVYH NLLRRWAKP" misc_feature complement(601739..602413) /locus_tag="Alide2_0579" /note="2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy; cl01206" /db_xref="CDD:194067" gene complement(602407..603504) /locus_tag="Alide2_0580" /db_xref="GeneID:10481601" CDS complement(602407..603504) /locus_tag="Alide2_0580" /EC_number="1.1.3.15" /inference="protein motif:PRIAM:1.1.3.15" /note="KEGG: ajs:Ajs_0513 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent dehydrogenase" /codon_start=1 /transl_table=11 /product="(S)-2-hydroxy-acid oxidase" /protein_id="YP_004386512.1" /db_xref="GI:330823209" /db_xref="InterPro:IPR000262" /db_xref="GeneID:10481601" /translation="MSPSDRIPPGVWNAIDYERLAPQAMDAGRHAYVAGGCGWDATVA ANRAAFAGWAVLPRLLRDVRAGHTRLQLAGMDLPHPLLLAPVAHQRLAHPDAEIATAR AAQATGSCLVASTLSSCTLEDIAAASGPARWFQLYLQPEREHSLDLLRRAEAAGYRAI VLTLDASIQLASRGALQAGFAMPADCVSANLARYPQPAPAQPAAGESRIFQGAMRHAP RWDDLRWLLASTRLPVWIKGVLHPEDARELQAAGAAGLIVSNHGGRSLDGAPASLRML PALRTAVGAGYPLLLDGGVRSGQDAFKALALGADAVLVGRLQVYALAVAGALGVAHML QMLVEELHACMAQAGCARLSDITHDTLTPSC" misc_feature complement(602434..603459) /locus_tag="Alide2_0580" /note="Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate...; Region: alpha_hydroxyacid_oxid_FMN; cd02809" /db_xref="CDD:73371" misc_feature complement(602416..603444) /locus_tag="Alide2_0580" /note="FMN-dependent dehydrogenase; Region: FMN_dh; pfam01070" /db_xref="CDD:189831" misc_feature complement(order(602557..602559,602713..602715, 602722..602724,602794..602796,602986..602988, 603010..603012,603094..603096,603163..603165, 603409..603411)) /locus_tag="Alide2_0580" /note="active site" /db_xref="CDD:73371" misc_feature complement(order(602713..602715,602722..602724, 602986..602988,603094..603096,603409..603411)) /locus_tag="Alide2_0580" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73371" misc_feature complement(order(602557..602559,602713..602715, 602722..602724,602794..602796,603010..603012, 603094..603096,603163..603165)) /locus_tag="Alide2_0580" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73371" misc_feature complement(order(602722..602724,602986..602988, 603094..603096)) /locus_tag="Alide2_0580" /note="putative catalytic residues [active]" /db_xref="CDD:73371" gene complement(603558..605846) /locus_tag="Alide2_0581" /db_xref="GeneID:10481602" CDS complement(603558..605846) /locus_tag="Alide2_0581" /inference="protein motif:PFAM:PF00593" /note="PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: ajs:Ajs_0514 TonB-dependent receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="YP_004386513.1" /db_xref="GI:330823210" /db_xref="GO:0004872" /db_xref="GO:0005215" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR012910" /db_xref="GeneID:10481602" /translation="MPSFSSIKKPKNLRMAAALLPLSAMAQQAPAPLHTLPAVTVQEQ AIDPNPNAEVGAPYKAKTSADTRHTRPLAETPQTIQVVTKSAIDDSGATDLKQILAAQ PGITLGTGENGNAFGDRYIIRGQEARSDVFVDGLRDPGMTTRESFAVEQIEITKGPNS SFAGRGSAGGAINAITKQATLDYDFTRVSAGVGTDSHHRLTMDMNKAFSDTFALRANA LTAGEDVPDRSPSRRRRDGLALSGLWEVNSDLSVTLDYYGLRAKDKHPDLGGYLVGTV PNRRPATGVPVYAQGNDFLQSDVDTATARINYRFAPNVRLTSLTRYGQSDNGYATTGA SFNATAQRPAIDGGHTGWQEVKYFAHQDNLRWDKEIGGLKHEFIFGFEYTNHRVKSGN YRVTSAGTPNCRTSATATSNNGFCMTDANGVLLPNLGDLAGRSYDRNAMSRDWHVKTF ALSVMDTVDLTDRWTLFGGLRADHTDLSLSTYNAGTGAQTADYGYNDTLLNGHLGVSY KINPMGMVYASYGTAQDINGGESDVGTSAGYGGLVVDRFGNANAKPETSQNFEIGTKW NLLDDKLLLTAAAFRTTKKDVMEAAPGNTGYDSAGMFNTGKNRVQGIEFGLAGNVTKQ LQMQAGMAFMKSKVLGSVNPANIGNPLSNFADRTFGVQGKYQLTRDFSLGAGARYESD RCGGQPDTGAGYANGMCSQPVPSFTVYDLFASYRINKHADLRLNVLNATDKDYYTAVY RSGAFLYKGDGRAVRLTLNLDL" sig_peptide complement(605766..605846) /locus_tag="Alide2_0581" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.917 at residue 27" misc_feature complement(603567..605723) /locus_tag="Alide2_0581" /note="Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; Region: Fiu; COG4774" /db_xref="CDD:34387" misc_feature complement(603564..605615) /locus_tag="Alide2_0581" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature complement(order(605319..605345,605379..605411, 605436..605456,605475..605489,605529..605558, 605586..605615)) /locus_tag="Alide2_0581" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature complement(order(604770..604772,604851..604853)) /locus_tag="Alide2_0581" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene complement(606001..606927) /locus_tag="Alide2_0582" /db_xref="GeneID:10481603" CDS complement(606001..606927) /locus_tag="Alide2_0582" /inference="protein motif:PFAM:PF00753" /note="KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like" /codon_start=1 /transl_table=11 /product="beta-lactamase domain-containing protein" /protein_id="YP_004386514.1" /db_xref="GI:330823211" /db_xref="GO:0016787" /db_xref="InterPro:IPR001279" /db_xref="GeneID:10481603" /translation="MPIEPPALPPEITVFERGWLSANNVLFHGHGATVLVDSGYCAHA AQTVALVESGLQGRPLDRLLNTHLHSDHCGGNAALQARWPRLITHIPPGQWDQVQAWD PVALSYEPTGQDCPRFRADGRLMPGSELTLGGSAWQVHAAPGHDPHAVLLFEPRARVL ISGDALWENGFGVVFPELDGAHAFADVGATLDLIEQLDPLTVIPGHGSVFGGVPAAIA RARRRLAGFEADPIKHARHAAKVLLKYKLLEWQQAPLAQVQAWLAATPYYARLHGRYF ADRSAVQWTAEMVQELVDGGAARREGEMLHNA" misc_feature complement(606310..606879) /locus_tag="Alide2_0582" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(606946..608631) /locus_tag="Alide2_0583" /db_xref="GeneID:10481604" CDS complement(606946..608631) /locus_tag="Alide2_0583" /EC_number="6.2.1.3" /inference="protein motif:PRIAM:6.2.1.3" /note="KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="Long-chain-fatty-acid--CoA ligase" /protein_id="YP_004386515.1" /db_xref="GI:330823212" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10481604" /translation="MDRIWLRNYPPGVPHEVDADAYPSVAQMLEESFRRHADRPFSVC MDRWMRYGELDRLSARLGAWLQGQGLEPGARVAIMLPNVPQFAVTMAAVLRAGYTCVN VNPLYTARELAHQLQDSGACAIVILENFAHTLAEVIEDTAVRHVVVASMGDLLGPWRG RWISFAVRHLAKMVPAYALPLSGGRQVLPFRRALALGARRRLNPPRVTPDTPAFLQYT GGTTGLSKGAVLTQRNIVAATLQAEAWFGPALARVGDTRRINSIAALPLYHIFALTLC LLAIRQGSHLTLIPNPRDIPKFVQVLKKRPFHLLPAVNTLFNALLQNAQFRRLDFSQL CVSQAGGMAASEATAGQWKRLTGNTMIEGWGMSETCAIGTNNPVNSQAFNGSIGLPLP GIDIAIKDDAGASLPLGQPGEICIRGPNVMPGYWNQPEENARAFTADGFMRTGDIGVM DAQGYTRIVDRKKDMILVSGFNVYPNELEQVVAQCPGVLECAAVGVTDDKQGEAIKVF VVRSDPALTENEVERHCHQHLTGYKRPKYIEFRDELPKTNVGKILRRELRASK" misc_feature complement(606949..608631) /locus_tag="Alide2_0583" /note="Long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07059" /db_xref="CDD:180816" misc_feature complement(606955..>607998) /locus_tag="Alide2_0583" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 608754..609656 /locus_tag="Alide2_0584" /db_xref="GeneID:10481605" CDS 608754..609656 /locus_tag="Alide2_0584" /inference="similar to AA sequence:KEGG:Dtpsy_0533" /note="KEGG: dia:Dtpsy_0533 PGAP1 family protein" /codon_start=1 /transl_table=11 /product="PGAP1 family protein" /protein_id="YP_004386516.1" /db_xref="GI:330823213" /db_xref="InterPro:IPR012908" /db_xref="GeneID:10481605" /translation="MTNARWQRWLVALHWLLMAAWVLGFWRRSPALALAGLAAVPLLS RLCMLPQFLLMAWVCRHDETPRPGPAQLLRAWWAESRWAALVFGWWQPFRERAVADWL PPPGAGTPRGVVLVHGFLCNRAFWTPWFALLRARGHAFVAVTLEPAFGSIDGYAPAID AAVRRVAEATGRAPLVVGHSMGGLAIRAWLRAVPGADARVHRIVTLGTPHHGTWPAAH ARSTNGAQMRLHGPWVRQLRAQEPPGRAVLFVCWYSNGDNVAYPPAAAMLEGADNRFI AGVAHVEMAFDPRVLRDCLALLEA" misc_feature 608997..>609545 /locus_tag="Alide2_0584" /note="Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]; Region: LipA; COG1075" /db_xref="CDD:31273" misc_feature <609279..>609503 /locus_tag="Alide2_0584" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(609759..610976) /locus_tag="Alide2_0585" /db_xref="GeneID:10481606" CDS complement(609759..610976) /locus_tag="Alide2_0585" /EC_number="2.3.1.41" /inference="protein motif:PRIAM:2.3.1.41" /note="PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: dia:Dtpsy_0542 beta-ketoacyl synthase; SMART: Polyketide synthase, beta-ketoacyl synthase domain" /codon_start=1 /transl_table=11 /product="beta-ketoacyl-acyl-carrier-protein synthase I" /protein_id="YP_004386517.1" /db_xref="GI:330823214" /db_xref="InterPro:IPR014030" /db_xref="InterPro:IPR014031" /db_xref="InterPro:IPR020841" /db_xref="GeneID:10481606" /translation="MSKRRVVITGAGIVSCIGNDLQTVESALREGRSGIKAVPKFTEL GLRSQVAGVPEIDIEARIDRKQLRFMGDAAAYAQIALEDAIAQAGLTPSQVSHPRTGL IMGSGGGSPANQIEAADTLREKGIRRVGPYQVTRCMSSTVSACLATNFKVKGINYSIT SACSTSAHCIGAAAQQIAWGMQDVMFAGGGEELSWGMALLFDGMGAMSAKYNATPEKA ARAYDANRDGFVIAGGGGAVVLESLEHAQARGATILAEVVGFGATSDGEDMVAPSGDG AIACMRQAMEGLDGPIDYINTHGTSTPVGDMQEVRAMQAVFGDAVPPFSSTKSLTGHS LGATGVQEAIYCLIMLNKGFIAGSVNVETPDPQLGGMPLVMQTRDADLTSVLSNSFGF GGTNASLVLRRWK" misc_feature complement(609762..610967) /locus_tag="Alide2_0585" /note="3-oxoacyl-(acyl carrier protein) synthase I; Reviewed; Region: PRK07967" /db_xref="CDD:181184" misc_feature complement(609774..610967) /locus_tag="Alide2_0585" /note="Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834" /db_xref="CDD:29421" misc_feature complement(order(609792..609794,609798..609800, 610140..610142,610176..610190,610365..610370, 610377..610379,610440..610442,610449..610454, 610461..610463,610497..610505,610509..610511, 610515..610517,610533..610535,610545..610547, 610557..610559,610575..610577,610611..610616, 610620..610622,610632..610637,610656..610658)) /locus_tag="Alide2_0585" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29421" misc_feature complement(order(609978..609980,610083..610085, 610488..610490)) /locus_tag="Alide2_0585" /note="active site" /db_xref="CDD:29421" gene complement(610991..611497) /locus_tag="Alide2_0586" /db_xref="GeneID:10481607" CDS complement(610991..611497) /locus_tag="Alide2_0586" /EC_number="4.2.1.60" /inference="protein motif:TFAM:TIGR01749" /note="TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: dia:Dtpsy_0541 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ" /codon_start=1 /transl_table=11 /product="beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA" /protein_id="YP_004386518.1" /db_xref="GI:330823215" /db_xref="GO:0008693" /db_xref="InterPro:IPR010083" /db_xref="InterPro:IPR013114" /db_xref="GeneID:10481607" /translation="MADSFSYEQLIASGEGRLFTPDSGRLPLPPMLMFDRITHIDADG GAHGLGKIVAELDVKPDLWFFACHFQGDPVMPGCLGLDAMWQLIGFYLTWLRLPGRGR ALGAGEVKFTGEVGPDVKLVTYEIDIKRVIKRKLNMAIGDARLLADGKEIYVANDLRV GLFLREGD" misc_feature complement(611009..611425) /locus_tag="Alide2_0586" /note="FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA...; Region: FabA; cd01287" /db_xref="CDD:48032" misc_feature complement(order(611156..611161,611165..611167, 611171..611197,611252..611254,611264..611266, 611417..611419,611423..611425)) /locus_tag="Alide2_0586" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48032" misc_feature complement(order(611186..611197,611228..611233, 611240..611245,611252..611254,611420..611425)) /locus_tag="Alide2_0586" /note="active site 1 [active]" /db_xref="CDD:48032" misc_feature complement(order(611156..611167,611267..611275)) /locus_tag="Alide2_0586" /note="active site 2 [active]" /db_xref="CDD:48032" gene complement(611586..613175) /locus_tag="Alide2_0587" /db_xref="GeneID:10481608" CDS complement(611586..613175) /locus_tag="Alide2_0587" /inference="protein motif:TFAM:TIGR00546" /note="KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase; TIGRFAM: Apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="YP_004386519.1" /db_xref="GI:330823216" /db_xref="GO:0016410" /db_xref="InterPro:IPR003010" /db_xref="InterPro:IPR004563" /db_xref="GeneID:10481608" /translation="MAPPRLAGAPAPCRGPLSWLLALAAGLAQAASLAWPGPGGMKGQ PLWWLQILSLALLARVLLAAGGARRGALLSWLFATAWLAGTFWWLFISMHTYGGLAAP LAVLAVLGLAVFLGSYYAAASALFWTLRPYNRSSAAIVFAALWLLAELARGQWWTGFP WGAGGYAHTDGPLAVLARWLGVYGMGLAAALLAMGLAQWRRADLRRPRWWAGAAVLVL AWACLAAQRHCAIEGCGAPAPQHAPLSLALLQGNIPQDEKFQPGSGVPMALQWYHDQL RAADAALVVAPETAIPLLPQQLAPGYLDAIAERYGKGAQALLLGIPLGSLEQGYTNSV LGFAPDGRRPYRYDKHHLVPFGEFIPPFFRWFTDMMNIPLGDFDRGALDQPSLAWAGE RIAPNICYEDLFGEELGARFRDPQSSPTIMANLSNIGWFGDTVAIDQHLAISRLRALE FERPMVRATNTGATAVIDHRGRVSHRLPSYQRGVLHARVQGRDGAVTPYAWWVSRLGL APLWALGLGVAAWAWLLRRKT" misc_feature complement(611670..612446) /locus_tag="Alide2_0587" /note="Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571" /db_xref="CDD:143595" misc_feature complement(order(611895..611897,611967..611972, 611976..611981,612105..612107,612117..612119, 612129..612131,612312..612314)) /locus_tag="Alide2_0587" /note="putative active site [active]" /db_xref="CDD:143595" misc_feature complement(order(611979..611981,612129..612131, 612312..612314)) /locus_tag="Alide2_0587" /note="catalytic triad [active]" /db_xref="CDD:143595" misc_feature complement(order(611787..611792,611826..611831, 611835..611843,611847..611852,611946..611951, 611958..611972,611976..611978,612087..612095, 612108..612110,612117..612128)) /locus_tag="Alide2_0587" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143595" gene complement(613175..614062) /locus_tag="Alide2_0588" /db_xref="GeneID:10481609" CDS complement(613175..614062) /locus_tag="Alide2_0588" /inference="protein motif:PFAM:PF00571" /note="PFAM: Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: ajs:Ajs_0523 CBS domain-containing protein" /codon_start=1 /transl_table=11 /product="CBS domain-containing protein" /protein_id="YP_004386520.1" /db_xref="GI:330823217" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR005170" /db_xref="GeneID:10481609" /translation="MSDPYPARAPEKEDKRTFLQRLIEFLNPGPDSTAELIATLAEAE DNEVINADARVMLERVLRMAEMTTSDVMVPAPRMDMLDIDAPLDELMAQVLRTAHSRF PVYQGERDNIIGILLAKDLLKLWRSPELNVRTLVRPALFVPESKGLHALEREFRSTRN HMAIVIDEFGRIAGLVTFEDVIEQIVGEIEDEFDIHEDEGDIFGLADHSYRVSGDTPV ERVAEAFGVALRGSDPDEEFDTIGGLIAHELGRVPRKGETVTLCGLRFVVLHTKGGLV RWFKVTPAPADAAPDGSAR" misc_feature complement(613256..614062) /locus_tag="Alide2_0588" /note="Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]; Region: CorC; COG4535" /db_xref="CDD:34182" misc_feature complement(613511..613837) /locus_tag="Alide2_0588" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590" /db_xref="CDD:73090" misc_feature complement(613217..613450) /locus_tag="Alide2_0588" /note="Transporter associated domain; Region: CorC_HlyC; pfam03471" /db_xref="CDD:190650" gene complement(614173..614874) /locus_tag="Alide2_0589" /db_xref="GeneID:10481610" CDS complement(614173..614874) /locus_tag="Alide2_0589" /inference="protein motif:PFAM:PF00583" /note="KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain" /codon_start=1 /transl_table=11 /product="GCN5-like N-acetyltransferase" /protein_id="YP_004386521.1" /db_xref="GI:330823218" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10481610" /translation="MLPTKNWLRACLDVGRRPHRGLAMNTVMVPVRTLGPRHRERIAR HLLGLSERDRYLRFGYAATDEQVRRYVDLLDFGRDEVFGIFNRRLELIAMAHVAFAES KDYQGCAEFGVSVLASARGRGYGARLFERSVMLARNRGVRMMFIHALTENTAMLKIAR NAGASVQHDGSESEAYLQLPPAGLDTRVSEIVAEQFGEVDYQLKKQARQFWRLLADMQ EIRQGVREGRHQAAE" misc_feature complement(614386..614607) /locus_tag="Alide2_0589" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(615025..615510) /locus_tag="Alide2_0590" /db_xref="GeneID:10481611" CDS complement(615025..615510) /locus_tag="Alide2_0590" /inference="protein motif:PFAM:PF01037" /note="KEGG: dia:Dtpsy_0537 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type" /codon_start=1 /transl_table=11 /product="AsnC family transcriptional regulator" /protein_id="YP_004386522.1" /db_xref="GI:330823219" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR019887" /db_xref="InterPro:IPR019888" /db_xref="GeneID:10481611" /translation="MSERTVALDKLDRAILRRLQDNGRETYDLIGAQVGLSPSAVLRR ARRLEELGVIDRYVALVRPERVGLGLTAYLNVRLEKHTESHKRNPMDLFRASVQTWPE VVECAALTGEMDYLLRVVVADMAHYSRFIMDTLLKHPSVQDCKTSFVLDRVKATTALP V" misc_feature complement(615028..615501) /locus_tag="Alide2_0590" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(615148..615489) /locus_tag="Alide2_0590" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(615055..615234) /locus_tag="Alide2_0590" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 615670..616791 /locus_tag="Alide2_0591" /db_xref="GeneID:10481612" CDS 615670..616791 /locus_tag="Alide2_0591" /EC_number="1.13.11.27" /inference="protein motif:TFAM:TIGR01263" /note="TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: ajs:Ajs_0520 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylpyruvate dioxygenase" /protein_id="YP_004386523.1" /db_xref="GI:330823220" /db_xref="GO:0003868" /db_xref="InterPro:IPR004360" /db_xref="InterPro:IPR005956" /db_xref="GeneID:10481612" /translation="MTAALPTQAARETTAWENPMGLMGFEFVEFTSPQPGLLEDVFEK LGFTLVARHRSKDVLLYRQNQINFILNREPHSQAAYFGAEHGPSACGLAFRVKDAHRA YKRALELGAQPIEIPTGPMELRLPAIKGIGGAPLYLIDRFEDGKSIYDIDFEWLEGVP QRPEGHGLKEIDHLTHNVYRGRMGFWANFYEKLFNFREIRYFDIQGEYTGLTSKAMTA PDGRIRIPLNEEARQGGGQIEEFLMQFNGEGIQHIALVCDRLTDVVDRLGLAGVPLAP APNDVYYEMLDKRLPGHGQDVAALQARGILLDGSTAGGQPRLLLQIFSTPMLGPVFFE FIQREGDEGFGEGNFKALFESLERDQVNRGVIDTRAKGG" misc_feature 615736..616767 /locus_tag="Alide2_0591" /note="4-hydroxyphenylpyruvate dioxygenase; Region: 4HPPD; TIGR01263" /db_xref="CDD:162275" misc_feature 615742..616131 /locus_tag="Alide2_0591" /note="N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS); Region: HPPD_N_like; cd08342" /db_xref="CDD:176690" misc_feature order(615775..615783,615787..615792,615838..615840, 615844..615846,615928..615930) /locus_tag="Alide2_0591" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176690" misc_feature 616171..616743 /locus_tag="Alide2_0591" /note="C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS); Region: HPPD_C_like; cd07250" /db_xref="CDD:176673" misc_feature order(616186..616188,616306..616308,616345..616347, 616351..616353,616378..616380,616423..616425, 616636..616638,616669..616671,616699..616701, 616711..616716) /locus_tag="Alide2_0591" /note="active site" /db_xref="CDD:176673" misc_feature order(616186..616188,616423..616425,616669..616671) /locus_tag="Alide2_0591" /note="Fe binding site [ion binding]; other site" /db_xref="CDD:176673" gene 616793..617617 /locus_tag="Alide2_0592" /db_xref="GeneID:10481613" CDS 616793..617617 /locus_tag="Alide2_0592" /EC_number="1.14.16.1" /inference="protein motif:TFAM:TIGR01267" /note="TIGRFAM: Phenylalanine-4-hydroxylase, monomeric form; KEGG: dia:Dtpsy_0534 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase, C-terminal" /codon_start=1 /transl_table=11 /product="phenylalanine-4-hydroxylase" /protein_id="YP_004386524.1" /db_xref="GI:330823221" /db_xref="GO:0004505" /db_xref="InterPro:IPR005960" /db_xref="InterPro:IPR019774" /db_xref="GeneID:10481613" /translation="MAVQPAVYGASERPPRGDYTRARDDYTCAQDWAAYTAQDHDTYH RLYLRQSAQLPGLASEAFIAALPLLGAKERIPRFDDVNERLYRATRWQLVAVPGLIPE VPFFRLLAARKFPVTDWIRRPEEFEYIVEPDVFHDLFGHVPLLFNPVLADYMQRYGEG GLKAARLGACEMLARLYWYTIEFGLIREAAGLRAYGAGILSSHGELPYSVRSPEPQRL PLSLERAMRTRYKIDSYQQTYFVIDGFEQLFDLTAQDFEPLYARLRGLPEFAAGAG" misc_feature 616865..617542 /locus_tag="Alide2_0592" /note="Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH)...; Region: pro_PheOH; cd03348" /db_xref="CDD:48244" misc_feature order(617078..617080,617084..617092,617096..617098, 617105..617107,617261..617263,617321..617323) /locus_tag="Alide2_0592" /note="cofactor binding site; other site" /db_xref="CDD:48244" misc_feature order(617198..617200,617213..617215,617336..617338) /locus_tag="Alide2_0592" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:48244" gene 617758..618993 /locus_tag="Alide2_0593" /db_xref="GeneID:10481614" CDS 617758..618993 /locus_tag="Alide2_0593" /EC_number="1.2.4.4" /inference="protein motif:PRIAM:1.2.4.4" /note="KEGG: pol:Bpro_0273 branched-chain alpha-keto acid dehydrogenase E1 component; PFAM: Dehydrogenase, E1 component; 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoate dehydrogenase" /protein_id="YP_004386525.1" /db_xref="GI:330823222" /db_xref="InterPro:IPR001017" /db_xref="InterPro:IPR022593" /db_xref="GeneID:10481614" /translation="MTPHTALRLHVPEPTGRPGCSTDFSYLSISPAGAVRKPPIDTAP ADTADLATSLVRVLDDDGKACGPWAPAIHPERLRRGLRAMMKTRIFDARMLLAQRQKK LSFYMQCLGEEAIAVAHSMALQDGDMCFPTYRQQGLLLARDDISMVEMICQLMSNQRD PIKGRQLPVMYSYKRAGFFSISGNLATQVPQAVGWAMASAIKGDTKIASAWIGDGSTA ESDFHTALTFAHVYRAPVIINVVNNQWAISTFQAIAGGEGTTFAQRGVGVGIASLRVD GNDFLAVYAASQWAAERARSNCGPTLIEWETYRAGPHSTSDDPSKYRPADDWQRFPLG DPIERLKKHLIAIGEWSEARHEAAQKELEAEVIAAQKEAERHGSLLDGRVPSAATMFD DVYKDMPEHLRRQRQQLGV" misc_feature 617767..>617868 /locus_tag="Alide2_0593" /note="2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal; Region: OxoDH_E1alpha_N; pfam12573" /db_xref="CDD:153007" misc_feature 617914..618987 /locus_tag="Alide2_0593" /note="Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]; Region: AcoA; COG1071" /db_xref="CDD:31269" misc_feature 617998..618876 /locus_tag="Alide2_0593" /note="Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000" /db_xref="CDD:48163" misc_feature order(618067..618069,618223..618225,618304..618309, 618400..618402,618406..618417,618424..618426, 618436..618438,618448..618450,618493..618504, 618547..618549,618562..618564,618706..618708, 618718..618720) /locus_tag="Alide2_0593" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:48163" misc_feature order(618154..618159,618304..618306,618310..618312, 618394..618405,618484..618486,618490..618492, 618694..618696) /locus_tag="Alide2_0593" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48163" misc_feature order(618289..618291,618295..618297,618301..618303, 618316..618318,618325..618330,618337..618342, 618346..618351,618358..618360,618415..618420, 618436..618441,618448..618450) /locus_tag="Alide2_0593" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:48163" misc_feature order(618679..618699,618703..618735,618757..618765) /locus_tag="Alide2_0593" /note="phosphorylation loop region [posttranslational modification]" /db_xref="CDD:48163" gene 619033..620037 /locus_tag="Alide2_0594" /db_xref="GeneID:10481615" CDS 619033..620037 /locus_tag="Alide2_0594" /EC_number="1.2.4.4" /inference="protein motif:PRIAM:1.2.4.4" /note="PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: pol:Bpro_0274 branched-chain alpha-keto acid dehydrogenase E1 component; SMART: Transketolase-like, pyrimidine-binding domain" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoate dehydrogenase" /protein_id="YP_004386526.1" /db_xref="GI:330823223" /db_xref="InterPro:IPR005475" /db_xref="InterPro:IPR005476" /db_xref="GeneID:10481615" /translation="MTMIQALRSGLDVMMGRDDNVVVYGEDVGYFGGVFRVTEGLQAK YGKTRCFDAPISESGIVGTAIGMAAYGLKPVVEIQFADYVYPATDQIVSEAARLRHRS AGDFSAPMVIRMPCGGGIYGGQTHSQSPEAFFTHVCGLRTVMPSNPYDAKGLLIASIE CEDPVIFLEPKRLYNGPFDGHHDKPVVPWSRHELGKVPEGYFRVPLDKAAVFRPGSAV TVLTYGTMVWVSEAAARETGVDAEIIDLRSIWPLDLETIVDSVKKTGRCVVVHEATRT SGFGAELAALVQEHCFFHLEAPIERVTGWDTPYPHAQEWAYFPGPSRVGEALKRAVEA " misc_feature 619033..620034 /locus_tag="Alide2_0594" /note="Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022" /db_xref="CDD:30372" misc_feature 619045..619545 /locus_tag="Alide2_0594" /note="Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036" /db_xref="CDD:132919" misc_feature order(619087..619089,619093..619095,619111..619113, 619177..619179,619186..619188,619192..619209, 619216..619221,619225..619233,619288..619290, 619297..619302,619327..619332,619396..619398, 619405..619407,619450..619455,619516..619521) /locus_tag="Alide2_0594" /note="alpha subunit interface [polypeptide binding]; other site" /db_xref="CDD:132919" misc_feature order(619108..619110,619195..619197,619201..619203, 619279..619281,619288..619290) /locus_tag="Alide2_0594" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132919" misc_feature order(619111..619113,619186..619188,619192..619203, 619285..619290,619294..619296,619309..619311, 619321..619323,619330..619332,619396..619398, 619402..619407,619429..619431,619435..619440, 619444..619446) /locus_tag="Alide2_0594" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:132919" misc_feature 619654..620001 /locus_tag="Alide2_0594" /note="Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780" /db_xref="CDD:145764" gene 620039..621346 /locus_tag="Alide2_0595" /db_xref="GeneID:10481616" CDS 620039..621346 /locus_tag="Alide2_0595" /EC_number="2.3.1.168" /inference="protein motif:PRIAM:2.3.1.168" /note="KEGG: axy:AXYL_02631 lipoamide acyltransferase component of branched-chain alpha-keto aciddehydrogenase complex; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding" /codon_start=1 /transl_table=11 /product="dihydrolipoyllysine-residue (2-methylpropanoyl)transferase" /protein_id="YP_004386527.1" /db_xref="GI:330823224" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR001078" /db_xref="InterPro:IPR004167" /db_xref="GeneID:10481616" /translation="MGIYVIRVPDIGEGIAEVELVSWHVQPGDSVTEDQHLADVMTDK ATVEVPSPMHGRVLSLGGSPGQVMAVGAELVRLEVDGEGNTSESAVHKAPEATHSVAQ AAAPTPAAPAPAAAVDASRAAPAPAPVRSGAAPRAPAAVRKEGERPLASPAVRRRALD LGVDLRRVHGSGPAGRIEHHDLDAWAAGGGQAQAGGGSQYVERHGEEQVPVIGLRRKI AQKMQEAKRRIPHFSYVEEVDVTELEQLRQRLNQIHGAARGKLTLLPFLARAMVLALR DFPQINARYDDEAGQVTRYEAVHLGVATQTDTGLMVPVLRHAEALDLWACAAGIARVA EAARTGRAPREELSGSTITITSLGALGGIASTPVINHPEVAIVGVNRMVERPMLRGGQ VVARQLMNLSSSFDHRVVDGMDAARFIQAVRALLETPALLFVE" misc_feature 620042..621343 /locus_tag="Alide2_0595" /note="branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed; Region: PRK11856" /db_xref="CDD:183339" misc_feature 620048..620269 /locus_tag="Alide2_0595" /note="Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849" /db_xref="CDD:133458" misc_feature order(620138..620140,620159..620176,620186..620188) /locus_tag="Alide2_0595" /note="E3 interaction surface; other site" /db_xref="CDD:133458" misc_feature 620168..620170 /locus_tag="Alide2_0595" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133458" misc_feature 620474..620590 /locus_tag="Alide2_0595" /note="e3 binding domain; Region: E3_binding; pfam02817" /db_xref="CDD:111687" misc_feature 620648..621340 /locus_tag="Alide2_0595" /note="2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; cl02008" /db_xref="CDD:194225" gene 621354..622751 /locus_tag="Alide2_0596" /db_xref="GeneID:10481617" CDS 621354..622751 /locus_tag="Alide2_0596" /EC_number="1.8.1.4" /inference="protein motif:TFAM:TIGR01350" /note="TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: axy:AXYL_02632 dihydrolipoyl dehydrogenase 2; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region" /codon_start=1 /transl_table=11 /product="dihydrolipoamide dehydrogenase" /protein_id="YP_004386528.1" /db_xref="GI:330823225" /db_xref="GO:0004148" /db_xref="GO:0050660" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR004099" /db_xref="InterPro:IPR006258" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10481617" /translation="MTKEITTKLLVIGGGPGGYVAAIRAGQLGIPTVLAEGASLGGTC LNIGCIPSKAIIHAAEEFERARHQAAGSALGIRVSDPQIDIAQTVRWKDGIVARLTGG VGTLLRKAGVQVLKGWAQIEDGKTATVQLQGGESVRVRCEHLLLATGSEPVELPSMPF GGPIWSSTDALSPDVLPKRLVVVGAGYIGLELGIAYRKLGVEVTVVEAAQRVLPSYDE ELTEPVLQALQKQGVVLHLGCSVAGWDARHGVHVRNARADEFALPAERVLVAVGRRPR TAGFGLESLQLDMAGRHVAIDAHCRTSMRGVWAIGDVTGEPMLAHRAMAQGECVAEQI AGRNRRFEPMAIPAVCFTDPEVVVVGRTPGEARAAGLDCIDAAFPFAANGRAMTLEST GGFVRVVARRDNHLILGWQAVGHGVAELAAAFGQSIEMGARLEDVGHTIHAHPTMGEA VQEAALRALGQALHI" misc_feature 621360..622748 /locus_tag="Alide2_0596" /note="dihydrolipoamide dehydrogenase; Validated; Region: PRK05976" /db_xref="CDD:180333" misc_feature 621888..622091 /locus_tag="Alide2_0596" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 622389..622718 /locus_tag="Alide2_0596" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene 622856..623794 /locus_tag="Alide2_0597" /db_xref="GeneID:10481618" CDS 622856..623794 /locus_tag="Alide2_0597" /EC_number="6.1.1.14" /inference="protein motif:TFAM:TIGR00388" /note="TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: dac:Daci_1288 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase subunit alpha" /protein_id="YP_004386529.1" /db_xref="GI:330823226" /db_xref="GO:0000166" /db_xref="GO:0004820" /db_xref="GO:0005524" /db_xref="InterPro:IPR002310" /db_xref="GeneID:10481618" /translation="MLTFQQIILKLQSYWADQGCALLQPYDMEVGAGTSHTATFLRAI GPEPWKAAYVQPSRRPKDGRYGDNPNRLQHYYQYQVVLKPAPANILELYLGSLEALGF DLKKNDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCKPATGEITY GLERLAMYLQGVDNVYNLTWTEGLSYGDVYHQNEVEQSTYNFEHSDADFLFTAFGAHE KQAQHLMAEQLALPAYEQVLKAAHTFNLLDARGAISVTERAAYIGRIRNLARAVARSY LDSRARLGFPMAARAHADEVLAELAKVAEQQSKKAA" misc_feature 622862..623716 /locus_tag="Alide2_0597" /note="glycyl-tRNA synthetase, tetrameric type, alpha subunit; Region: glyQ; TIGR00388" /db_xref="CDD:129483" misc_feature 622862..623698 /locus_tag="Alide2_0597" /note="Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733" /db_xref="CDD:29812" misc_feature order(622868..622870,622880..622882,622892..622894, 622916..622921,622925..622927,622931..622942, 622988..622990,623015..623017,623027..623029, 623075..623077,623393..623395,623432..623434, 623441..623446,623465..623467,623471..623473, 623480..623482,623489..623494,623501..623506, 623513..623515,623522..623524,623534..623536, 623540..623551,623558..623560,623570..623572) /locus_tag="Alide2_0597" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29812" misc_feature 622913..622936 /locus_tag="Alide2_0597" /note="motif 1; other site" /db_xref="CDD:29812" misc_feature order(622949..622951,622955..622957,623030..623032, 623078..623080,623084..623086,623090..623098, 623261..623266,623276..623278,623324..623329, 623333..623338,623342..623347) /locus_tag="Alide2_0597" /note="active site" /db_xref="CDD:29812" misc_feature 623027..623038 /locus_tag="Alide2_0597" /note="motif 2; other site" /db_xref="CDD:29812" misc_feature 623336..623347 /locus_tag="Alide2_0597" /note="motif 3; other site" /db_xref="CDD:29812" gene 623814..625979 /locus_tag="Alide2_0598" /db_xref="GeneID:10481619" CDS 623814..625979 /locus_tag="Alide2_0598" /EC_number="6.1.1.14" /inference="protein motif:HAMAP:MF_00255" /note="TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: ajs:Ajs_0528 glycine--tRNA ligase" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase subunit beta" /protein_id="YP_004386530.1" /db_xref="GI:330823227" /db_xref="InterPro:IPR002311" /db_xref="InterPro:IPR008909" /db_xref="InterPro:IPR015944" /db_xref="GeneID:10481619" /translation="MTATSNLLVELFVEELPPKALQKLGDAFAGVLRDQLVAQGLAAA GAPLTAYASPRRLAAHIEGVLAQASDKAVSQKLMPVAVGLAADGQPTPALLKKLSALG ADASAVAGLKRVHDGKAEVLYYESTAQGATLAQGLQKALDEAIARLPIPKVMRYQLED GWTSVHFVRPAHGLVALHGAGVVPVAVLGLAAGNATQGHRFEAAVQPVVLRDADSYAE QLRAQGAVIAGFAERRAEIVRQLRAAAEKLGGGVRPIEDDALLDEVTALVERPNVLVC QFEREFLAVPQECLILTMKANQKYFPLLDAEGRLTHRFLVVSNISPQDAGAVIQGNER VVRPRLADAKFFFDQDRKKTLASRVAQLSKVVYHNQLGSQGERVERVRAIAKAIGQQL FAALAERHELQGTQDGEIAQDWLLTCVDNAALLAKTDLVTDMVGEFPELQGIMGGYYA VNDGLPDEVAHAIEDHYKPRFAGDELPRENVGLVVALADKIETLVGMFGIGNLPTGDR DPFALRRHALGVIRMLMEKDLPLDLGALLAGAVPAFAGRIDDPSALLADFIYDRLAGA LREQGYRSQEVDAVLALRPQRLALVEKQLAAVRAFSALPESQALAAANKRVSNILKKA GGDVHAHVNPELLREQAEQDLYAALQRFVPEADAQFERGDYTASLQTLAVLRAPVDAF FDDVMVNAEQLDLRLNRLGLLKTLHEAMNRVADLSRLAA" misc_feature 623862..625976 /locus_tag="Alide2_0598" /note="glycyl-tRNA synthetase subunit beta; Validated; Region: glyS; PRK01233" /db_xref="CDD:179258" misc_feature 623862..625565 /locus_tag="Alide2_0598" /note="Glycyl-tRNA synthetase beta subunit; Region: tRNA_synt_2f; pfam02092" /db_xref="CDD:190207" misc_feature 625650..>625886 /locus_tag="Alide2_0598" /note="Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020" /db_xref="CDD:196302" gene 626025..626600 /locus_tag="Alide2_0599" /db_xref="GeneID:10481620" CDS 626025..626600 /locus_tag="Alide2_0599" /inference="protein motif:TFAM:TIGR01656" /note="TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; KEGG: dia:Dtpsy_0545 histidinol-phosphate phosphatase family protein" /codon_start=1 /transl_table=11 /product="histidinol-phosphate phosphatase family protein" /protein_id="YP_004386531.1" /db_xref="GI:330823228" /db_xref="GO:0016791" /db_xref="InterPro:IPR006543" /db_xref="InterPro:IPR006549" /db_xref="InterPro:IPR013954" /db_xref="GeneID:10481620" /translation="MKLAILDRDGTLNALGDGFIASPDDWVPLPGALEAVARLNHAGW HVVLATNQPGLGRGLFDAQTLVDIHAKMHRQLAALGGRIDAVFYCPHAEGEACNCRKP APGLMEQICERYGVEGDEILVAGSCLAHLQAAADLGAQLHMVCTGRSAHLDPRQPLPP GWPPGTRAHASLGALVDFVAPQDGAALPVVA" misc_feature 626031..626399 /locus_tag="Alide2_0599" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature order(626043..626051,626172..626177) /locus_tag="Alide2_0599" /note="active site" /db_xref="CDD:119389" misc_feature 626043..626060 /locus_tag="Alide2_0599" /note="motif I; other site" /db_xref="CDD:119389" misc_feature 626172..626174 /locus_tag="Alide2_0599" /note="motif II; other site" /db_xref="CDD:119389" gene 626851..627594 /locus_tag="Alide2_0600" /db_xref="GeneID:10481621" CDS 626851..627594 /locus_tag="Alide2_0600" /inference="protein motif:PFAM:PF01553" /note="KEGG: ajs:Ajs_0530 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase" /codon_start=1 /transl_table=11 /product="phospholipid/glycerol acyltransferase" /protein_id="YP_004386532.1" /db_xref="GI:330823229" /db_xref="GO:0008415" /db_xref="InterPro:IPR002123" /db_xref="GeneID:10481621" /translation="MALIRSLVHLLVMAVTVIPYTLAILLVRVLGGSPAARYRVARAW LALCVDSARWLLGIRTHIMGMEHLPQDPKQGVVLLVKHQSTYETFLMPAIMPHPLAYV FKKELLRIPFFGWSIGSLDMIHIDRKHGSRAFHKVVEQGKRLLAQGTWVIMFPEGTRV ARGQAGEYKSGATRLAIMAGVPVVPIAVTSARCWPRKALVKHPGVVEVSIGKPIPTTG RKHEELMAEVETWIESEMRRLDPEAYPAA" misc_feature 626869..627585 /locus_tag="Alide2_0600" /note="1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204" /db_xref="CDD:30553" misc_feature 627010..627537 /locus_tag="Alide2_0600" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989" /db_xref="CDD:153251" misc_feature order(627094..627096,627103..627105,627109..627111, 627157..627168,627319..627327) /locus_tag="Alide2_0600" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153251" gene 627597..628400 /locus_tag="Alide2_0601" /db_xref="GeneID:10481622" CDS 627597..628400 /locus_tag="Alide2_0601" /inference="protein motif:PFAM:PF01863" /note="PFAM: Protein of unknown function DUF45; KEGG: dia:Dtpsy_0547 protein of unknown function DUF45" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386533.1" /db_xref="GI:330823230" /db_xref="InterPro:IPR002725" /db_xref="GeneID:10481622" /translation="MRPFVQLALDLLGGGVPAAPAHAPRAPGTKRQLRLGDAVVPYTL QRARRRSIGFTVGPDGLAVRAPAWVTLAAVDAALQDKAGWILRKLGEQQARRRQQEAA RIAWGPGAVLPYLGEPLTVVLAHGRAARGGMLVQDARELHLPLAHGAGPGQVRDAVQA WLMRDARRCFTERLDHFAPLLGVRWTQLRLSSARTRWGSARTGGSISLNWRLMHYRPA IIDYVVAHELSHLRVMDHSPRFWSVVESVVPDHAALRRSLRELPAPPWD" misc_feature 627744..628376 /locus_tag="Alide2_0601" /note="Protein of unknown function DUF45; Region: DUF45; cl00636" /db_xref="CDD:153902" gene 628461..628895 /locus_tag="Alide2_0602" /db_xref="GeneID:10481623" CDS 628461..628895 /locus_tag="Alide2_0602" /inference="protein motif:SMART:SM00450" /note="SMART: Rhodanese-like; KEGG: ajs:Ajs_0532 rhodanese domain-containing protein" /codon_start=1 /transl_table=11 /product="Rhodanese-like protein" /protein_id="YP_004386534.1" /db_xref="GI:330823231" /db_xref="InterPro:IPR001763" /db_xref="GeneID:10481623" /translation="MSTHTVSPTDQLLPAEGYAGDVSPQLAWQWVRAGHAVLVDVRSD AERDWVGFVPGAVAVAWKQWPGMVPNPDFDAQIRAAVPPGARAVLLCRSGVRSVDAAR RATALGITAYNVLEGFEGSLDENGQRNHRGGWRFRGLPWRQG" misc_feature 628524..628868 /locus_tag="Alide2_0602" /note="Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins; Region: RHOD_1; cd01522" /db_xref="CDD:29085" misc_feature 628731..628733 /locus_tag="Alide2_0602" /note="active site residue [active]" /db_xref="CDD:29085" gene complement(628900..629388) /locus_tag="Alide2_0603" /db_xref="GeneID:10481624" CDS complement(628900..629388) /locus_tag="Alide2_0603" /inference="protein motif:PFAM:PF04972" /note="KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM; PFAM: Transport-associated; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup" /codon_start=1 /transl_table=11 /product="transport-associated protein" /protein_id="YP_004386535.1" /db_xref="GI:330823232" /db_xref="InterPro:IPR002482" /db_xref="InterPro:IPR007055" /db_xref="InterPro:IPR018392" /db_xref="GeneID:10481624" /translation="MGLFTFIKEAGEKLFGGSPAQAASAAAPTQAELNARAGKAIETY IATQNLGVSGLQVAFEGPEGKVTVTGTAPTQAAKEKVTLCCGNVASVTSVDNQMTVAN PEPEAQYHDVVRGDTLSAIAKKFYGDASKYPVIFEANKPMLSHPDKIYPGQKLRIPPL PR" misc_feature complement(628912..629388) /locus_tag="Alide2_0603" /note="LysM domain/BON superfamily protein; Provisional; Region: PRK11198" /db_xref="CDD:183034" misc_feature complement(629083..629274) /locus_tag="Alide2_0603" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" misc_feature complement(628915..629067) /locus_tag="Alide2_0603" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature complement(order(629017..629019,629026..629028, 629041..629043,629050..629052,629059..629061)) /locus_tag="Alide2_0603" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" gene 629535..630311 /locus_tag="Alide2_0604" /db_xref="GeneID:10481625" CDS 629535..630311 /locus_tag="Alide2_0604" /inference="protein motif:TFAM:TIGR00671" /note="KEGG: dia:Dtpsy_0550 pantothenate kinase; TIGRFAM: Type III pantothenate kinase; PFAM: Type III pantothenate kinase" /codon_start=1 /transl_table=11 /product="putative Baf family transcriptional acitvator" /protein_id="YP_004386536.1" /db_xref="GI:330823233" /db_xref="GO:0016563" /db_xref="InterPro:IPR004619" /db_xref="GeneID:10481625" /translation="MTFLAIDVGNSRLKWALYDAARPGTAMLAHGVEFLDHIERLSEG PWAGLPAPTHMLGCVVAGDAIKRRVVEQMELWDVPAHWVVPSQEEAGVVNGYDYPTRL GADRWVAMIGARHRLLAQGPARPLILAMVGTAVTVEALDTSGRFLGGLIVPGHGIMLR ALESGTAGLHVPTGEVRLFPSNTSDALTSGGTYAIAGAVERMYQHLLQHCGQEPVCMM TGGAGWKMAPSMTRPFELVENLIFDGLLEIASRRLAAAAA" misc_feature 629535..630290 /locus_tag="Alide2_0604" /note="Bordetella pertussis Bvg accessory factor family; Region: Bvg_acc_factor; cl09130" /db_xref="CDD:195799" gene complement(630308..630985) /locus_tag="Alide2_0605" /db_xref="GeneID:10481626" CDS complement(630308..630985) /locus_tag="Alide2_0605" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0551 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="regulatory protein TetR" /protein_id="YP_004386537.1" /db_xref="GI:330823234" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10481626" /translation="MARKAPRRTAERILEASLALFNRFGEPHVSTASIAAELGISSGN LYYHYRAKDEIVNALFAQYDEALGGLLQAGGDAADVEDAWFFMHRLFELLWQYRFLYR DLNNLLSRNRLLETQFPGVLQAKVAAMRALLAAMRRGGALRMDHEDDLQATATCMVVV LTYWLCFEYVGDPRRALEPESAQAALLRGARHVLGLLMPYLEPEQRAHLARLVQAYET SDGAGEG" misc_feature complement(630809..630949) /locus_tag="Alide2_0605" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(631143..631586) /locus_tag="Alide2_0606" /db_xref="GeneID:10481627" CDS complement(631143..631586) /locus_tag="Alide2_0606" /inference="protein motif:TFAM:TIGR01837" /note="KEGG: dia:Dtpsy_0552 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: Poly granule associated; PFAM: Poly granule associated" /codon_start=1 /transl_table=11 /product="poly(hydroxyalkanoate) granule-associated protein" /protein_id="YP_004386538.1" /db_xref="GI:330823235" /db_xref="InterPro:IPR008769" /db_xref="GeneID:10481627" /translation="MPRPPRDDDAPNPAHELPRMARESAQQIWLAGLGAFAKAQEEGG KVFEALVREGLALQRKTQSAAEEHLGEAAQRMSHLASDLGERAAGQWDRLEGIFEQRV AKALQRLGMPTAQDMQALQERVHALEEELRRLQGRRKADAADDED" misc_feature complement(631215..631541) /locus_tag="Alide2_0606" /note="Poly(hydroxyalcanoate) granule associated protein (phasin); Region: Phasin; cl07863" /db_xref="CDD:195632" gene 631785..632846 /locus_tag="Alide2_0607" /db_xref="GeneID:10481628" CDS 631785..632846 /locus_tag="Alide2_0607" /EC_number="4.2.1.46" /inference="protein motif:TFAM:TIGR01181" /note="TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="dTDP-glucose 4,6-dehydratase" /protein_id="YP_004386539.1" /db_xref="GI:330823236" /db_xref="GO:0008460" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR005888" /db_xref="GeneID:10481628" /translation="MILVTGGAGFIGANFVLDWLAGSDEPVVNLDKLTYAGNLHNLDG LSGDARHLFVQGDIGDGALVSRLLAGHRPRAIVNFAAESHVDRSIHGPEDFIQTNVVG TFRLLEVVRHYWQALSATEKEAFRFLHVSTDEVYGTLAPSAPAFTEAHGYEPNSPYSA SKAASDHLVRAWHHTYGLPVLTTNCSNNYGPLHFPEKLIPLMIVNALAGKSLPVYGDG MQVRDWLYVKDHCSAIRRVLEAGRLGETYNVGGWNEKPNIEIVKTVCALLDELRPRAD GQSYATQITYVQDRPGHDRRYAIDARKIERELAWRPAETFETGIRKTVQWYLDNPQWV QQVQSGAYRDWVAKQYASA" misc_feature 631788..632837 /locus_tag="Alide2_0607" /note="dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]; Region: RfbB; COG1088" /db_xref="CDD:31285" misc_feature 631788..632777 /locus_tag="Alide2_0607" /note="dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: dTDP_GD_SDR_e; cd05246" /db_xref="CDD:187557" misc_feature order(631800..631802,631806..631817,631875..631886, 631890..631895,631950..631958,632019..632027, 632031..632033,632076..632078,632172..632180, 632256..632258,632268..632270,632337..632348) /locus_tag="Alide2_0607" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187557" misc_feature order(632031..632039,632178..632186,632256..632258, 632337..632345,632370..632378,632385..632390, 632421..632429,632442..632444,632448..632450, 632553..632555,632652..632654,632661..632663, 632673..632675) /locus_tag="Alide2_0607" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187557" misc_feature order(632043..632045,632049..632051,632058..632063, 632070..632072,632082..632087,632094..632096, 632106..632108,632115..632117,632196..632198, 632229..632231,632235..632240,632244..632255, 632262..632264,632271..632276,632283..632288, 632295..632300,632304..632312,632664..632666) /locus_tag="Alide2_0607" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187557" misc_feature order(632079..632081,632178..632180,632256..632258, 632268..632270) /locus_tag="Alide2_0607" /note="active site" /db_xref="CDD:187557" gene 632843..633721 /locus_tag="Alide2_0608" /db_xref="GeneID:10481629" CDS 632843..633721 /locus_tag="Alide2_0608" /EC_number="1.1.1.133" /inference="protein motif:TFAM:TIGR01214" /note="TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: ajs:Ajs_0538 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase" /codon_start=1 /transl_table=11 /product="dTDP-4-dehydrorhamnose reductase" /protein_id="YP_004386540.1" /db_xref="GI:330823237" /db_xref="GO:0008831" /db_xref="InterPro:IPR005913" /db_xref="GeneID:10481629" /translation="MNILLLGKNGQVGWELQRSLAVLGEVTALGHDEADFTQPQAVAQ AVRALCPDVIVNAAAHTAVDKAESEPERARLLNATTPGVLAEEAVRLGAWLVHYSTDY VFDGSGSRPWRETDAPAPLSVYGATKLEGERLIQQSGCRHLILRTSWVYAARGGNFAK TMLRLAQERERLTVIDDQWGAPTGADLLADVTAHAIRHLQQRPQDGGLYHCVAGGETT WHSYAKYVVEHARQAQSAINIIAKEIAPVPTSAFLTPARRPHNSRLDNAKLQAAFGLR LPPWQQGVARMLTEIL" misc_feature 632843..633718 /locus_tag="Alide2_0608" /note="dTDP-4-dehydrorhamnose reductase; Provisional; Region: PRK09987" /db_xref="CDD:182184" misc_feature 632846..633697 /locus_tag="Alide2_0608" /note="dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs; Region: dTDP_HR_like_SDR_e; cd05254" /db_xref="CDD:187564" misc_feature order(632861..632863,632867..632878,632930..632935, 632945..632953,633011..633019,633023..633025, 633068..633070,633134..633142,633212..633214, 633224..633226,633281..633292) /locus_tag="Alide2_0608" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187564" misc_feature order(633071..633073,633140..633142,633212..633214, 633224..633226) /locus_tag="Alide2_0608" /note="active site" /db_xref="CDD:187564" misc_feature order(633140..633142,633212..633214,633287..633289, 633326..633328,633362..633364,633380..633382) /locus_tag="Alide2_0608" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187564" gene 633732..634622 /locus_tag="Alide2_0609" /db_xref="GeneID:10481630" CDS 633732..634622 /locus_tag="Alide2_0609" /EC_number="2.7.7.24" /inference="protein motif:TFAM:TIGR01207" /note="TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: bvi:Bcep1808_3215 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate thymidylyltransferase" /protein_id="YP_004386541.1" /db_xref="GI:330823238" /db_xref="GO:0008879" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR005907" /db_xref="GeneID:10481630" /translation="MTAPTRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMVYYPLS TLMLAGIRDILLISTPQDTPRFEQLLGDGGQWGVNLQYAVQPSPDGLAQAFLIGERFL AGSPSALVLGDNIFYGHDLQPLLQTANARTSGATVFAYHVQDPERYGVVAFDAAGKAT SIEEKPQAPQSNYAVTGLYFYDGQVVDIAKAVKPSARGELEITSVNQAYLEQGRLTVQ TMGRGYAWLDTGTHESLLDASQFIATLENRQGLKVACPEEIAWRSGWIDAVQLEKLAQ PLAKNRYGQYLLQLLRHKVF" misc_feature 633747..634466 /locus_tag="Alide2_0609" /note="G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; Region: G1P_TT_short; cd02538" /db_xref="CDD:133019" misc_feature 633750..634607 /locus_tag="Alide2_0609" /note="glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207" /db_xref="CDD:130274" misc_feature order(633762..633764,633768..633773,633984..633986, 633993..634004,634068..634070,634176..634178, 634221..634226,634254..634256,634338..634340) /locus_tag="Alide2_0609" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133019" misc_feature order(633780..633782,633789..633797,633804..633809, 633819..633827,633831..633842,633849..633851, 633924..633926,634080..634085,634149..634160, 634170..634175,634407..634415,634425..634430, 634437..634439,634446..634454,634461..634466) /locus_tag="Alide2_0609" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:133019" gene 634622..635167 /locus_tag="Alide2_0610" /db_xref="GeneID:10481631" CDS 634622..635167 /locus_tag="Alide2_0610" /EC_number="5.1.3.13" /inference="protein motif:TFAM:TIGR01221" /note="TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: dia:Dtpsy_0556 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related" /codon_start=1 /transl_table=11 /product="dTDP-4-dehydrorhamnose 3,5-epimerase" /protein_id="YP_004386542.1" /db_xref="GI:330823239" /db_xref="GO:0008830" /db_xref="InterPro:IPR000888" /db_xref="GeneID:10481631" /translation="MKATPLAIPDVVLIEPKVFGDARGFFFESFNQKAFDEATGTNFQ FVQDNHSRSGRGVLRGLHYQVQQPQGKLVRVVRGAVWDVAVDIRRNSPTFGRWVGAEL SEDNQRQLWVPPGFAHGFVALSESADFLYKTTDYYAPQHERCIAWNDAQLAIAWPYAG EPVLSAKDQAGKPLAEAELCM" misc_feature 634625..635155 /locus_tag="Alide2_0610" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 635158..636339 /locus_tag="Alide2_0611" /db_xref="GeneID:10481632" CDS 635158..636339 /locus_tag="Alide2_0611" /inference="protein motif:PFAM:PF09314" /note="PFAM: Domain of unknown function DUF1972; Glycosyl transferase, group 1; KEGG: gme:Gmet_2169 glycosyltransferase-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386543.1" /db_xref="GI:330823240" /db_xref="InterPro:IPR001296" /db_xref="InterPro:IPR015393" /db_xref="GeneID:10481632" /translation="MHVSAAPASGGQAGRALRVALLGTRGIPAGYGGFETFAQQLAVR LVRRGHQVTVYAEADRQGLPDTWYEGVRIRHVQRPRWGAASVIGYDCRCLRDARQGYD LLYMLGYGAAWACWWNRRILGQKVWLNVDGLEWARSKWGHLARVYLRAMEWVSSRAPT RVLADAQAIADRYARLYPRGVPCSFIAYGAELPAVSSRAAHDLSRWNLRTGEYVLVVA RPEPENHVLEIVEGHARWGGDWPLVVVGDVRPVTPYQKRLLALAGDKVRFIGGVYDAG LLTGLRMGAGCHVHGHSVGGTNPSLLEALACGNVVVAHDNPFNREVARDAAHYFQTSQ QLAEALERVRALTASARQAVAARARGIVAQHYTWDSIAAQYENLMHAECAGIAAGALH R" misc_feature 635209..636294 /locus_tag="Alide2_0611" /note="This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule...; Region: GT1_like_6; cd04955" /db_xref="CDD:100001" misc_feature 635209..636291 /locus_tag="Alide2_0611" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" gene 636336..637247 /locus_tag="Alide2_0612" /db_xref="GeneID:10481633" CDS 636336..637247 /locus_tag="Alide2_0612" /inference="protein motif:TFAM:TIGR01556" /note="KEGG: ajs:Ajs_0541 rhamnosyltransferase; TIGRFAM: Rhamnosyltransferase; PFAM: Glycosyl transferase, family 2" /codon_start=1 /transl_table=11 /product="rhamnosyltransferase" /protein_id="YP_004386544.1" /db_xref="GI:330823241" /db_xref="InterPro:IPR001173" /db_xref="InterPro:IPR006446" /db_xref="GeneID:10481633" /translation="MSAASCVHAVVVSYRSDPQRLARQFDRLLEQVSAIVWVDNASGD GLRALASRWPAERLHAIWLGDNQGIGAAQNRGMERALALGASHVLLMDDDSLPAPDMV PRLLAALAAHPQAAAVGACHVDPRRETGRTPFSVVAGGRLRWLECSDARQVWEVDHVI ASGCLIPAPVLQAVGGMREDFFIDWVDTEWCLRARDRGYRIYGVCAALLEHTLGDRVV RVLGREIPWHAPWRHYYQARNFVLMLRSRQMGHVSKSHMTFRQLKRFIVFSTLVPGRW QYFKMWLRGLLHGCQGRSGPVVPPGSR" misc_feature 636375..637067 /locus_tag="Alide2_0612" /note="RfbF is a putative dTDP-rhamnosyl transferase; Region: GT2_RfbF_like; cd02526" /db_xref="CDD:133017" misc_feature order(636375..636377,636615..636617) /locus_tag="Alide2_0612" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133017" misc_feature 636387..637220 /locus_tag="Alide2_0612" /note="Predicted glycosyltransferases [General function prediction only]; Region: COG1216" /db_xref="CDD:31409" gene 637255..638958 /locus_tag="Alide2_0613" /db_xref="GeneID:10481634" CDS 637255..638958 /locus_tag="Alide2_0613" /inference="protein motif:PFAM:PF00437" /note="PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: vei:Veis_0688 general secretory pathway protein E" /codon_start=1 /transl_table=11 /product="type II secretion system protein E" /protein_id="YP_004386545.1" /db_xref="GI:330823242" /db_xref="GO:0005524" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR007831" /db_xref="GeneID:10481634" /translation="MNNDDMNAQEPRQKLGEILLAGQKLSRNDLERALEVQRSMGGRL GRLLLSLGLVSEGDVCAALAYQAGLPLVRQEAFPQDRPELGQLNTSFLLSNHVLPLGP VDGQAPLPDFVAADPQDPAMQAALRLVFGQVPGLAFGLESEIAARLQQWFVQDELPPE EQEGQAYGASEFIEHLRDMASEAPIIQRVNQILAQAVSAKASDIHIETYEEKSVVRIR VDGEIFPIDDIDNKDAPAIVSRIKILSQLDIAERRMPQDGRTKIRVHGKEMDVRVSTV PTAFGESVVMRLLEKNFDLLSLQSLHFTPPTLAAMRQLLAVPHGILLVTGPTGSGKST TLYASMQELEGQNLKILTVEDPVEYRLPWLNQVQVQPQIGLTFAQVLRAFLRQDPDVI MIGEMRDGETAEIAVQAALTGHLVLSTLHTNSAMGAIVRLINMGVEPYLITASVVGVL AQRLVRQLCGDCKQPLSAEQARVAAASLGVAPTGEATLYKPVGCANCRNTGYRGRVAI HELLRLTDEVKQQVLERGTAVHGAQGAYVGGNLLQDGATKVFSGLTTAEEVLRVARQH D" misc_feature <637288..637704 /locus_tag="Alide2_0613" /note="bacteriophage N4 adsorption protein B; Provisional; Region: nfrB; PRK15489" /db_xref="CDD:185386" misc_feature 637510..638940 /locus_tag="Alide2_0613" /note="general secretory pathway protein E; Region: type_II_gspE; TIGR02533" /db_xref="CDD:131585" misc_feature 637972..638769 /locus_tag="Alide2_0613" /note="PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129" /db_xref="CDD:29995" misc_feature 638230..638253 /locus_tag="Alide2_0613" /note="Walker A motif; other site" /db_xref="CDD:29995" misc_feature order(638233..638235,638245..638253,638308..638310, 638314..638319,638437..638442) /locus_tag="Alide2_0613" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29995" misc_feature 638425..638442 /locus_tag="Alide2_0613" /note="Walker B motif; other site" /db_xref="CDD:29995" gene 638951..640162 /locus_tag="Alide2_0614" /db_xref="GeneID:10481635" CDS 638951..640162 /locus_tag="Alide2_0614" /inference="protein motif:PFAM:PF00482" /note="PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F" /codon_start=1 /transl_table=11 /product="type II secretion system F domain-containing protein" /protein_id="YP_004386546.1" /db_xref="GI:330823243" /db_xref="InterPro:IPR018076" /db_xref="GeneID:10481635" /translation="MIEFHYAGTLADGKPCQGSIRASDAQAARLRLLGQGITPVRLQG GEAAASPGGAGERPAVRLKRSDVLLFTREMAHLKQANMPLDKALAMLRETAGNERIKA FLASVQEEVRGGKSLYQSLQPFERDLGRQYLVLIRAGEASGSLHTILQELTTQLEADD KLRNYIISSMTYPAILLVVAVLSVILLLAFVVPQFRQIFDSMGDALPYSTQLVLQASD FVRGHWMALLLGLAVTVLLLSRWADTATGRRRIDAAVLSLPLMGKVLRNLQFALYFRT FGVLLQRGVPLVDALRIAIDTLTNQALRQDMEPLVAVVKTGQRLSSGLDSPHFAGTST PQLIRVAEETGQLGSTVLSLAARYEDEGRRTMGRVLATMEPLIIIVLGALVAFIIVAI LGGVLSINDTI" misc_feature 638951..640159 /locus_tag="Alide2_0614" /note="Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulF; COG1459" /db_xref="CDD:31648" misc_feature 639158..639469 /locus_tag="Alide2_0614" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" misc_feature 639767..640129 /locus_tag="Alide2_0614" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene 640189..640629 /locus_tag="Alide2_0615" /db_xref="GeneID:10481636" CDS 640189..640629 /locus_tag="Alide2_0615" /inference="protein motif:TFAM:TIGR01710" /note="KEGG: aav:Aave_4158 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal" /codon_start=1 /transl_table=11 /product="general secretion pathway protein G" /protein_id="YP_004386547.1" /db_xref="GI:330823244" /db_xref="GO:0008565" /db_xref="InterPro:IPR010054" /db_xref="InterPro:IPR012902" /db_xref="InterPro:IPR013545" /db_xref="GeneID:10481636" /translation="MHFATTLRTPLQARRARGFTLIELLVVLVILTLLAGLVGPRVLD QLGGAKAKTARVQIGEMEQAVDLFKLDVGRYPNDAEGLRALVERPATVQGWNGPYLKK GLPVDPWGAAYQYKFPGRHGGPDIFSLGADGKPGGESDNADIYN" misc_feature 640315..640626 /locus_tag="Alide2_0615" /note="Bacterial type II secretion system protein G; Region: GSPII_G; pfam08334" /db_xref="CDD:192005" gene 640659..641141 /locus_tag="Alide2_0616" /db_xref="GeneID:10481637" CDS 640659..641141 /locus_tag="Alide2_0616" /inference="similar to AA sequence:KEGG:Daci_1302" /note="KEGG: dac:Daci_1302 general secretion pathway protein H" /codon_start=1 /transl_table=11 /product="general secretion pathway protein H" /protein_id="YP_004386548.1" /db_xref="GI:330823245" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10481637" /translation="MRLRTPRPWGRHRGFTLLELLVVLVLAGIAVAVVGGSAQAYMER ARYHQTVRDLASQLGRARALCVQQGRQIVVSYAPQNRQLSIDGQSVLDIPASLSVRWE GLAQAPQQQNAAGQPVFVFNAEGGARGGQIQVSRGAQGVLFSVNWLLGTVQQTVVAAP " sig_peptide 640659..640781 /locus_tag="Alide2_0616" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.899 at residue 41" gene 641138..641539 /locus_tag="Alide2_0617" /db_xref="GeneID:10481638" CDS 641138..641539 /locus_tag="Alide2_0617" /inference="similar to AA sequence:KEGG:Aave_4156" /note="KEGG: aav:Aave_4156 general secretion pathway protein I" /codon_start=1 /transl_table=11 /product="general secretion pathway protein I" /protein_id="YP_004386549.1" /db_xref="GI:330823246" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10481638" /translation="MNTRRARGLRGFSLLEALVAMAIASIAFAVLYRTVGQSSLNATT VESRAEAALVARSVLASATFAEDLGQHPEGQSGPWQWSVQVQPEQVAVHAPGARQAPP PLQAARVELTIARDGRTVLAWTSWKPYRAAP" sig_peptide 641138..641227 /locus_tag="Alide2_0617" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.915) with cleavage site probability 0.847 at residue 30" misc_feature 641165..>641215 /locus_tag="Alide2_0617" /note="hypothetical protein; Provisional; Region: PRK10557" /db_xref="CDD:182546" gene 641536..642147 /locus_tag="Alide2_0618" /db_xref="GeneID:10481639" CDS 641536..642147 /locus_tag="Alide2_0618" /inference="similar to AA sequence:KEGG:Veis_0683" /note="KEGG: vei:Veis_0683 general secretion pathway protein J" /codon_start=1 /transl_table=11 /product="general secretion pathway protein J" /protein_id="YP_004386550.1" /db_xref="GI:330823247" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10481639" /translation="MTRPTPSRQRGFTLLELLIALAVTTAVVGLVFAGFGVIGRSQES SQQLVDRSERMLQVGQWLGRKFDTLRLLSHGQDGRFVLFFSGSAAGALWVSPLPERGD AGGLYVLRASPLRHDDGRVDLAIEALPYDGALMALDWARAEREILLPDVRTLQWYYQD GATGQWLQQWDAGRAGYPVRIRLALGDARGDWPELVFALARAQ" sig_peptide 641536..641637 /locus_tag="Alide2_0618" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.700) with cleavage site probability 0.641 at residue 34" gene 642144..643055 /locus_tag="Alide2_0619" /db_xref="GeneID:10481640" CDS 642144..643055 /locus_tag="Alide2_0619" /inference="similar to AA sequence:KEGG:ebA1612" /note="KEGG: eba:ebA1612 general secretory pathway protein K" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386551.1" /db_xref="GI:330823248" /db_xref="InterPro:IPR005628" /db_xref="GeneID:10481640" /translation="MKRYASAQRGAALVLVLWLVAALSLTVLAGARGIRQQTQRAAFD LERLRIEPVLDAARQLAVQSLLKEGGRARGYRAWQLQLGPYGVELEIIPSGGLVDVNV ASDALLLALLQKVGGLTPGEAAIMASRIRDYIDPDDQPGGIGGAEAPQYRAAGWPVLP RNGPVDDLSELRMVLGMSPELYEIISPYLGINGQQRIEIDAAPPALIDALTDQPGLGA QIQSSPPEMRAGALLSGAVAQIFATARAGGGTVKVRAMVQTDQGHWWQREAWVDLSTR PDSLTPWTTLSLEPTRRMNPPPQEIHP" sig_peptide 642144..642233 /locus_tag="Alide2_0619" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.979 at residue 30" misc_feature <642492..642929 /locus_tag="Alide2_0619" /note="General secretion pathway protein K; Region: GspK; pfam03934" /db_xref="CDD:146520" gene 643052..644065 /locus_tag="Alide2_0620" /db_xref="GeneID:10481641" CDS 643052..644065 /locus_tag="Alide2_0620" /inference="protein motif:PFAM:PF05137" /note="PFAM: Fimbrial assembly; KEGG: aav:Aave_4153 fimbrial assembly family protein" /codon_start=1 /transl_table=11 /product="Fimbrial assembly family protein" /protein_id="YP_004386552.1" /db_xref="GI:330823249" /db_xref="InterPro:IPR007813" /db_xref="GeneID:10481641" /translation="MTAREQFNRRLEAVFDRLAWGFGDARRMLVERGLWPAAAPVLAA PDGARFCVAATRLRPAGGKRRPQGLLVPEGDSLWGSLQLPDMPRRQLGPAVQEALWRV SPLPPDQIWCAWRATPQAQGGWSVEWGACRRDQQGAALSHLGLPADASLYLARAGHAL PVHGAGWPAQQRRQRWFDALALLGVLLLAAALAVPALMPLALKRQAVVRAVEHVNELE PKAAPLRPQLDELRQQASVAESLRQAAASADLPLASVIEALSEALPDDSWLERVEISG NDIRITGVAGNAGDLAARLGRHGGFVEVRASAASVRDNALGKERFTFEMRWRPPQAEG GKP" misc_feature 643814..644032 /locus_tag="Alide2_0620" /note="Fimbrial assembly protein (PilN); Region: PilN; pfam05137" /db_xref="CDD:191205" gene 644062..644610 /locus_tag="Alide2_0621" /db_xref="GeneID:10481642" CDS 644062..644610 /locus_tag="Alide2_0621" /inference="protein motif:PFAM:PF10741" /note="PFAM: General secretion pathway protein M; KEGG: vei:Veis_0680 general secretion pathway protein M" /codon_start=1 /transl_table=11 /product="general secretion pathway protein M" /protein_id="YP_004386553.1" /db_xref="GI:330823250" /db_xref="InterPro:IPR019677" /db_xref="GeneID:10481642" /translation="MNVWTRRALVTALLCVLALLAGAGLAYNALWSRYDSGLSLLESR SERIDGLVGAGPDIASRLESARQTVAPWLHPAGENAANDAQQRLRELINASGNTLVSS QVALEPGAEGRLASVRLTATLTGDWPRLVRFMQDLQARTPPFWVRSASLAREGANTSG AAQTARLTLQLAAPLAPEKGQP" sig_peptide 644062..644142 /locus_tag="Alide2_0621" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.721 at residue 27" misc_feature 644299..>644514 /locus_tag="Alide2_0621" /note="General secretion pathway protein M; Region: GspM_II; pfam10741" /db_xref="CDD:151222" gene 644607..644948 /locus_tag="Alide2_0622" /db_xref="GeneID:10481643" CDS 644607..644948 /locus_tag="Alide2_0622" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386554.1" /db_xref="GI:330823251" /db_xref="GeneID:10481643" /translation="MIRPWHFTPLLAGAALAAGAYWWLAEKDLWQPPPARTPELPQLA PLQQPVRSTVREALARPPLWASRRPVEADGKKGGMEQEINQSRLTAVFESGRQRITTS LKYIYVFQDSR" sig_peptide 644607..644669 /locus_tag="Alide2_0622" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.839) with cleavage site probability 0.705 at residue 21" gene complement(644933..645226) /locus_tag="Alide2_0623" /db_xref="GeneID:10481644" CDS complement(644933..645226) /locus_tag="Alide2_0623" /inference="similar to AA sequence:KEGG:Bpro_2744" /note="KEGG: pol:Bpro_2744 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386555.1" /db_xref="GI:330823252" /db_xref="GeneID:10481644" /translation="MPTPLAQASAAELQRHLAEFTGRTAAHVRPYGKHLLIQMHRDDD VDTVARLSEVARNKYTAAFRSHTGRWEPLPAPAADLKQTAELVATLLASYLES" gene complement(645192..646322) /locus_tag="Alide2_0624" /db_xref="GeneID:10481645" CDS complement(645192..646322) /locus_tag="Alide2_0624" /inference="similar to AA sequence:KEGG:Bpro_2745" /note="KEGG: pol:Bpro_2745 putative transposase" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="YP_004386556.1" /db_xref="GI:330823253" /db_xref="GeneID:10481645" /translation="MRRGRRAQVVKLSKKEREALEALVRQSTAAQRDVVRAKIALMAD EGLTTAAIAASLGLSLPSVSKWRSRVASQGMAGLREVQRPGRPRRIADAQRLQLLALA CEPAEGLGRATPTLNELCERAVQRGVVPHISRSHLQRILQAGDVRPHRVRQWLHSPDP QFREKVNAICELYRQQPLGSVVLSIDEKTGIQAIERKHADRAPQPGRARRREFEYIRH GTQALTAALDVHSGRVLGRCTDRRTQDDLVAFMEEVACAYPQGTVHVIWDNLNTHRAQ AVWADFNSRHGERFVFHFTPLHASWVNQIELLFGIYSRRVLRHASHTSTQHLRQRTEA FIAQRNVSPKPFKWTFAGFELQTGEPRRFTRHAHTPRPSKRR" misc_feature complement(645375..645668) /locus_tag="Alide2_0624" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 646531..647694 /locus_tag="Alide2_0625" /db_xref="GeneID:10481646" CDS 646531..647694 /locus_tag="Alide2_0625" /inference="protein motif:PFAM:PF00534" /note="PFAM: Glycosyl transferase, group 1; KEGG: dbr:Deba_0993 glycosyl transferase group 1" /codon_start=1 /transl_table=11 /product="group 1 glycosyl transferase" /protein_id="YP_004386557.1" /db_xref="GI:330823254" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10481646" /translation="MVRQRLKHGPGGPLKSRNVFTHYDFVRVARVQLAPQPARANTLL WFIPDFNIGSGGHQTIFRTIWHLERMGWESSIVIVSPTVHATAESARHDICEHFFPLQ ARVFIGFDGLPSSEFVIATGWQTAYPVRAVAGPVKKLYFVQDFEPSFYPTGTESVLAD NTYHFGFFGITAGGWLARKLRAEYGMLTHPISFGVDHDLYRQRPRREPHIKRVFFYAR PPTPRRAFEFGLLVLEAVSRRLPDTQFILAGWDVSDYHIPFPHLAAGVISPEELADVF SQCDAALVLSLTNLSLMPLEVMAAGCAVVSNRGDCVEWLLNDDVALLTDPTLEALSDA LCHLLQDDAARQALCRRAQEFARHQHWKASAEAFEQGLLEARKLLSVVAEEAV" misc_feature <647038..647640 /locus_tag="Alide2_0625" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" gene 647765..648589 /locus_tag="Alide2_0626" /db_xref="GeneID:10481647" CDS 647765..648589 /locus_tag="Alide2_0626" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: mag:amb1063 ABC-type polysaccharide/polyol phosphate export systems" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_004386558.1" /db_xref="GI:330823255" /db_xref="InterPro:IPR013525" /db_xref="GeneID:10481647" /translation="MGVSVNRPGALQQASSGRAQHAWVLWRYWMLREFKTRYAGSVLG LSWAFVQPLATLAIFYVLFGMVLAVRVPGLDLANGYLLHLLAGLAVWLPFTDAIGRGV GCLAAYEDFLRKQPMPAEILPAVAVGGSLLVMAIGYALFLVLSLTQGAPLRATWAWLP LLVLAQVALTFGLTLLLSMAHFLWRDVGSIVAFALQLWFYLTPVVYPLAQVPERFHVW YLLNPVACLVLAVEWAALGMAMPGGTLWALLAWTLLLGGGGWWFFRSMKAALGEAL" misc_feature 647831..648487 /locus_tag="Alide2_0626" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene 648589..649809 /locus_tag="Alide2_0627" /db_xref="GeneID:10481648" CDS 648589..649809 /locus_tag="Alide2_0627" /EC_number="3.6.3.40" /inference="protein motif:PRIAM:3.6.3.40" /note="PFAM: ABC transporter-like; KEGG: vei:Veis_0673 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Teichoic-acid-transporting ATPase" /protein_id="YP_004386559.1" /db_xref="GI:330823256" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481648" /translation="MAIAFKNIEKHYAVYARPQDRLWEWVTGRQRHRVHVALAGIDFE VRPGETFGLIGENGAGKSTLLKIAAGTIRPTRGEVMRQGRVAALLELGAGFHPEESGQ DNIRFMAALHGLEGEALEDFAARATEFSELSAETLQRPVKTYSSGMFMRLAFAAATAI EPEVLIVDEALSVGDLHFQKKSLNRILELRGRGATVLFCSHNLYQVRSLCQRAAWIHG GRIEAIGHTEDVVTAYEAHERRRYAHLRTDAPDAAVAPTQTAAAPPAHASVPVKIMRV GIETADGINPAQVDSFQDLTLEIEVESYGDAPFHVGFAIVRPDKDNVFGSSTQFLGSR PPMRGVGQHRVRVRFPRLPLLSGEYLWSVYTLDDSGLQVLDMAELIQPFTVLNQKHRE FGLVWLEHEWLQVQ" misc_feature 648589..649311 /locus_tag="Alide2_0627" /note="ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagH; COG1134" /db_xref="CDD:31329" misc_feature 648595..649263 /locus_tag="Alide2_0627" /note="ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides...; Region: ABC_KpsT_Wzt; cd03220" /db_xref="CDD:72979" misc_feature 648751..648774 /locus_tag="Alide2_0627" /note="Walker A/P-loop; other site" /db_xref="CDD:72979" misc_feature order(648760..648765,648769..648777,648979..648981, 649090..649095,649189..649191) /locus_tag="Alide2_0627" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72979" misc_feature 648970..648981 /locus_tag="Alide2_0627" /note="Q-loop/lid; other site" /db_xref="CDD:72979" misc_feature 649018..649047 /locus_tag="Alide2_0627" /note="ABC transporter signature motif; other site" /db_xref="CDD:72979" misc_feature 649078..649095 /locus_tag="Alide2_0627" /note="Walker B; other site" /db_xref="CDD:72979" misc_feature 649102..649113 /locus_tag="Alide2_0627" /note="D-loop; other site" /db_xref="CDD:72979" misc_feature 649177..649197 /locus_tag="Alide2_0627" /note="H-loop/switch region; other site" /db_xref="CDD:72979" gene 649791..650702 /locus_tag="Alide2_0628" /db_xref="GeneID:10481649" CDS 649791..650702 /locus_tag="Alide2_0628" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386560.1" /db_xref="GI:330823257" /db_xref="GeneID:10481649" /translation="MAAGAMSRDWRLDWAFPALGRLPTTLPWRLVHWLGRDAPAVRRA TELFLQQRFSQVFLGATGEQHRQWARAHLDMLATEMLDAAALHRLGEPGGPSITLQGW GHVQTLQQRGQGFILVLNHYDRLLTAVIALGRRGVALNILTMPVVDNPGLGEAQRAFL VRKIAATTRITGGQWRTSSEPLRPVHEGLRKGQGWVILADAWSPDFARMRDHAFLGGY LRLPTGIERLAESTGAALLHACTRSLAPDRLEVAVEALSGSPQAAIDAVIQRLDRDVR ERPWAWWHWGLWDQMWRPAAQEGESNV" misc_feature 650079..650642 /locus_tag="Alide2_0628" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" misc_feature order(650151..650153,650160..650162,650166..650168, 650217..650225,650229..650231,650391..650393, 650403..650408) /locus_tag="Alide2_0628" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153244" gene 650695..651699 /locus_tag="Alide2_0629" /db_xref="GeneID:10481650" CDS 650695..651699 /locus_tag="Alide2_0629" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: azl:AZL_f01750 hypothetical protein" /codon_start=1 /transl_table=11 /product="type 11 methyltransferase" /protein_id="YP_004386561.1" /db_xref="GI:330823258" /db_xref="GO:0008168" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10481650" /translation="MSDIERYDYAFDPEGDAWAARLLRRVPGRASVLELGPGPGAMTQ VLRARGQAVTVVENDPAALQALRPLGVQAVEADLDGLAWLDALQGRRFGAILACDVLE HLRSPEQVLEELAGLLEPMGSLIISLPNIAYAGVVAALRAGVFDYADKGLLDRTHLRF FTRRSIEQLLMDCGWVPLAWEANRVPVAQSEFAWHWEAIPDAWRQHLLTGWTDFDVYQ WMVVAAPARDSRDWEMVQVRAEASQLRAQLQALQLTHATEHASLLEHQKAFGEARQLI AQFEQERDSLRQQVQQLATDKAALEQACQDTQETSAQERAAIGGSSWRARLARRLGVD " misc_feature 650791..651072 /locus_tag="Alide2_0629" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 651716..652360 /locus_tag="Alide2_0630" /db_xref="GeneID:10481651" CDS 651716..652360 /locus_tag="Alide2_0630" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase-like, catalytic; KEGG: rso:RSc0977 putative transglycosylase signal peptide protein" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic subunit" /protein_id="YP_004386562.1" /db_xref="GI:330823259" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10481651" /translation="MRKVRAACTLVLLAGAWVAAAQAQTVWQFVDRDGVTHMGNVPPP APRGVIWIEGVGSATPAGQSKSGNTQAAKLPGYAAAQPLLEEAARAQALEPALVIAVA AAESGFNADAVSRKGALGLMQVMPATAERYGVAGRSGTDGRHAVMEPKLNVQVGSRYL ADLLRMFDGDKELALAAYNAGEGAVVKHGRRIPPYPETRQYVDKVMRLYQTLVR" sig_peptide 651716..651787 /locus_tag="Alide2_0630" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.886 at residue 24" misc_feature 652007..652345 /locus_tag="Alide2_0630" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(652028..652030,652088..652090,652190..652192, 652247..652249) /locus_tag="Alide2_0630" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 652028..652030 /locus_tag="Alide2_0630" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 652394..653494 /locus_tag="Alide2_0631" /db_xref="GeneID:10481652" CDS 652394..653494 /locus_tag="Alide2_0631" /inference="protein motif:PFAM:PF00953" /note="PFAM: Glycosyl transferase, family 4; KEGG: vei:Veis_1227 glycosyl transferase family protein" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 4" /protein_id="YP_004386563.1" /db_xref="GI:330823260" /db_xref="GO:0008963" /db_xref="InterPro:IPR000715" /db_xref="GeneID:10481652" /translation="MIWLSFVAFLSSVLAAAGVLRWAQDHAANYGRAVPQRFHYGDVP RLGGLAMLVGIALSWGLGRLTTAMGDSSSLRMDSWVLWWLLALMPAVVGGMVEDVTQR LAPRFRLLLSLLTAVLAVSMLGLQLPRLDLPWLDALLATAPWLGVGIALLAVTGLPHA FNIIDGYNGLAGMVAIIVCLALAHVALQVGDRGLAAVLVSTAAATGGFLVWNYPRGML FAGDGGAYIWGGVIALASLSLVQRNPQVSPWFPMLLLIYPVWETVFSMYRKLVRGVSP GVADALHFHQLIYRRIVRRVLHGDAARRMLKRNNRTSPYLWAFTLLTVVPAVLFWRYT PVLIGFCLLFMVLYVMAYLAIIRFKVPGWLQP" misc_feature 652394..653404 /locus_tag="Alide2_0631" /note="UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]; Region: Rfe; COG0472" /db_xref="CDD:30820" sig_peptide 652394..652465 /locus_tag="Alide2_0631" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.891) with cleavage site probability 0.699 at residue 24" misc_feature 652496..653101 /locus_tag="Alide2_0631" /note="This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases...; Region: GT_MraY_like; cd06912" /db_xref="CDD:133467" misc_feature 652682..652687 /locus_tag="Alide2_0631" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133467" misc_feature 653048..653059 /locus_tag="Alide2_0631" /note="putative catalytic motif [active]" /db_xref="CDD:133467" gene 653555..654445 /locus_tag="Alide2_0632" /db_xref="GeneID:10481653" CDS 653555..654445 /locus_tag="Alide2_0632" /EC_number="2.7.2.8" /inference="protein motif:TFAM:TIGR00761" /note="TIGRFAM: Acetylglutamate kinase; KEGG: ajs:Ajs_0588 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase" /codon_start=1 /transl_table=11 /product="acetylglutamate kinase" /protein_id="YP_004386564.1" /db_xref="GI:330823261" /db_xref="GO:0003991" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR004662" /db_xref="GeneID:10481653" /translation="MTDLLSIAPRDKAEILAQALPYIRKFHGKTMVIKYGGNAMTDPE LQQDFAEDVVLLKLVGINPVVVHGGGPQIEQALNRLGKKGEFIQGMRVTDAETMEVVE WVLAGEVQQDIVGLIHHAGGKAVGLTGRDGGMIRARKLKMLDNKDPSIEYDVGQVGDI VAIDPSVVKALQDDAFIPVISPIGFGEENESYNINADVVASKLATVLQAEKLVMLTNI PGVLDKNGQLLAELTPQQIDALIADGTISGGMLPKLAGAIDAAKAGVNAVHVVDGRVP HSMLLEILTDQAYGTMIRSH" misc_feature 653597..654433 /locus_tag="Alide2_0632" /note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using...; Region: AAK_NAGK-C; cd04250" /db_xref="CDD:58616" misc_feature 653597..653626 /locus_tag="Alide2_0632" /note="feedback inhibition sensing region; other site" /db_xref="CDD:58616" misc_feature order(653600..653608,653612..653614,653621..653626, 653705..653707,653717..653719,653729..653731, 653789..653794,653849..653851,653858..653863, 653876..653878,653885..653887,653897..653899, 653918..653920,653924..653932,653936..653938, 653942..653953,654053..654055,654080..654082, 654383..654385,654392..654397,654407..654409) /locus_tag="Alide2_0632" /note="homohexameric interface [polypeptide binding]; other site" /db_xref="CDD:58616" misc_feature order(653654..653656,653663..653668,654137..654139, 654200..654208,654218..654220,654287..654289, 654293..654295,654299..654304,654311..654313) /locus_tag="Alide2_0632" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58616" misc_feature order(653756..653761,653822..653827,654131..654133, 654137..654142) /locus_tag="Alide2_0632" /note="N-acetyl-L-glutamate binding site [chemical binding]; other site" /db_xref="CDD:58616" gene 654628..655263 /locus_tag="Alide2_0633" /db_xref="GeneID:10481654" CDS 654628..655263 /locus_tag="Alide2_0633" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_0589 nucleoid occlusion protein" /codon_start=1 /transl_table=11 /product="regulatory protein TetR" /protein_id="YP_004386565.1" /db_xref="GI:330823262" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10481654" /translation="MSDSSPDSSVPGDAPASRRRLRPGERREQILHALAAMLEQPGAE RITTAALARRLDVSEAALYRHFASKAQMFEGLIDFIEHSVFTLVRQIVEHPGEAGGAQ RAARVAAMVLQFGERNPGMVRVMVGDALVFENERLQQRMNLFFDKVEATLRQCLRPAA EADGEAAPTVQAQVRAAALCDLIRGRLQRYARSGFRRLPTEHLDATLALQL" misc_feature 654709..655254 /locus_tag="Alide2_0633" /note="division inhibitor protein; Provisional; Region: slmA; PRK09480" /db_xref="CDD:181894" misc_feature 654715..654855 /locus_tag="Alide2_0633" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 655405..656061 /locus_tag="Alide2_0634" /db_xref="GeneID:10481655" CDS 655405..656061 /locus_tag="Alide2_0634" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0570 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="regulatory protein TetR" /protein_id="YP_004386566.1" /db_xref="GI:330823263" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10481655" /translation="MPVSTSSPKTARAPRREGRALHKGRQTKAAIVDAALGLATHIGL EGLSIGALADVTGMSKSGVFAHFGSREELQISVIREYHARFEQEVFYPAMEAPRGIAR LRAMFDNWMKRTSVEIDSGCIYISGAVEFDDRAGPVRDALANSVLTWQAAMKRAIAQC KECGEIRPGVSEEQMLFEIHGLILALHYEARFLHTPGSMERANTGFDNILARYRADGG " misc_feature 655471..655977 /locus_tag="Alide2_0634" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 655495..655623 /locus_tag="Alide2_0634" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 656109..657905 /locus_tag="Alide2_0635" /db_xref="GeneID:10481656" CDS 656109..657905 /locus_tag="Alide2_0635" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: dia:Dtpsy_0571 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004386567.1" /db_xref="GI:330823264" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10481656" /translation="MPTYNPPLRDMQFVLHEVFQVSDEFKAMPRHADVDADTINAVLE EAGKFAAEVTFPLNVSGDTEGCTLDQQTHEVTTPKGFKEAYAKYVEGGWAALSCDPEY GGQGLPHVVNQCLYEMLNSANQAWTMYPGLSHGAYEALLAHGTDAQKKTYLPKLVSGE WTGTMCLTEPHCGTDLGLLRTKAEPQADGTYRITGNKIFISAGEHDVAANIVHLVLAR LPDAPKGSKGISLFVVPKFHVNADGSLGARNPIYCTGLEHKMGIHGNATAQIAIDGAV GTMVGEPNKGLAAMFVMMNAARLGVGNQSLGLTEVAFQNALAYAKDRLQMRSLSGVKA KDKEADPIIVHPDVRKMLLTAKAYAEGARALQIYCTLLLDKAHHHPDEKERKGCDELV ALLTPIVKAFITDNGHIATNACMQVFGGHGFIKEWGMEQFVRDNRINMIYEGTNTVQS LDLLGRKVLGNQGATLKKLGKLIGQLVAEEGVNEKMAEFINPIAILGEQMTKFTTEIG FKGMQNPDEVGAAAVDYLRVAGHLVFGYLFARMAQVSLRAIAAGSQDPFYVAKLQTAR FYFAKLFPETVTLMRTARAGAKVLMDTDAALA" misc_feature 656112..656213 /locus_tag="Alide2_0635" /note="Acyl-CoA dehydrogenase N terminal; Region: AcylCoA_DH_N; pfam12418" /db_xref="CDD:193019" misc_feature 656115..657878 /locus_tag="Alide2_0635" /note="acyl-CoA dehydrogenase; Provisional; Region: PTZ00456" /db_xref="CDD:185635" misc_feature 656232..657482 /locus_tag="Alide2_0635" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(656511..656513,656601..656603,656607..656609, 656703..656705,656709..656711,657429..657437, 657441..657443,657447..657449) /locus_tag="Alide2_0635" /note="active site" /db_xref="CDD:173838" misc_feature 657513..657893 /locus_tag="Alide2_0635" /note="Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806" /db_xref="CDD:193282" gene 657976..658404 /locus_tag="Alide2_0636" /db_xref="GeneID:10481657" CDS 657976..658404 /locus_tag="Alide2_0636" /inference="protein motif:PFAM:PF09917" /note="KEGG: dia:Dtpsy_0572 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2147" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386568.1" /db_xref="GI:330823265" /db_xref="InterPro:IPR019223" /db_xref="GeneID:10481657" /translation="MRQALTAIVLMAITAPALAQMSPLGLWRSVDDKTGEPKAEIRIV DNAGVLSGRIEKTLRKDAKPTCTECQDDRKGQPIVGLEIIRGGKKDEGKDVWAGGRIL DPENGKDYRASLTPVDGGKKLEVRGYLGPFWRTQTWQRLE" sig_peptide 657976..658035 /locus_tag="Alide2_0636" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 20" misc_feature 658048..658395 /locus_tag="Alide2_0636" /note="Uncharacterized protein conserved in bacteria (DUF2147); Region: DUF2147; cl01951" /db_xref="CDD:194215" gene 658426..660828 /locus_tag="Alide2_0637" /db_xref="GeneID:10481658" CDS 658426..660828 /locus_tag="Alide2_0637" /inference="protein motif:PFAM:PF02737" /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG: dac:Daci_1339 3-hydroxyacyl-CoA dehydrogenase NAD-binding" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding protein" /protein_id="YP_004386569.1" /db_xref="GI:330823266" /db_xref="GO:0003824" /db_xref="GO:0016491" /db_xref="InterPro:IPR001753" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="GeneID:10481658" /translation="MTRFNVKKVAVLGAGVMGAQIAAHLVNVKVPVVLFDLPAKEGSK SAIAEKAIANLKKLKPSPIGVAEDADLIQPANYEEHMGLLKDCDLVIEAIAERMDWKL DLYTKIAPHVAAHALLASNTSGLSITKLSEALPEALRHRFCGIHFFNPPRYMPLVELI ATPATEARVIDQLEAFVTSGLGKGVVRAKDTPNFIANRIGIAGMLSTMKEVENFGLTY DVVDDLTGKKLGRASSGTFRTADVVGLDTMAHVIKTLQDNLGPETDPFYGSFGTPPVL AKLIALGNLGQKTKAGFYKKVGRDILRFELESEDYVPAGQKADDVYGRMLKRPAAERL KLLRAASGAPGRFLWAILRNSFHYAAVHLETIAESARDVDLCLRWGFGMKQGPFELWQ EAGWLEVAKMVQEDIDAGKALCSAPLPKWVFEGPVAEAGGVHTAEGSWSPALKKFVAR RVLPVYERQLFPEKLLGEASLPDWQTAGTTLAESKALRTWTLDGKVLIASIKNKMHAI SPEVMEGLMEAVELAEQEYQAMVIWSGDAPFSVGADLEATMPAFVVGGADAIDSIEAE LQNLMLRIRYAQVPVVSAIHGMALGGGCELAVYSARRVAHMESYIGLVEVGVGLVPGA GGLTYIARRAAENAARSTGKDLLPFLTEGFTAAAMAKVGTSAIESRKLGYLLDSDIIV PHKDELLFVAINEARAMAQGGWRAPLKRLFPVVGRNGIATIKAQLVNMEGGGFISAYD FKVASMIAEVVCGGDVDAGSLVSEEYLMQLERKAFCHLIGQPKTHERILGMLNTGKPV RN" misc_feature 658441..659349 /locus_tag="Alide2_0637" /note="3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Region: FadB; COG1250" /db_xref="CDD:31442" misc_feature 658447..658998 /locus_tag="Alide2_0637" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 659005..659310 /locus_tag="Alide2_0637" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" misc_feature 659890..660414 /locus_tag="Alide2_0637" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(659938..659940,659944..659946,660034..660036, 660046..660060,660187..660189,660193..660201, 660265..660270,660277..660279) /locus_tag="Alide2_0637" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(660052..660054,660199..660201) /locus_tag="Alide2_0637" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(660139..660141,660163..660165,660226..660237, 660271..660282,660298..660300,660304..660312, 660316..660321,660334..660339,660343..660345, 660358..660360,660364..660366,660370..660372, 660379..660381,660412..660414) /locus_tag="Alide2_0637" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 660849..662042 /locus_tag="Alide2_0638" /db_xref="GeneID:10481659" CDS 660849..662042 /locus_tag="Alide2_0638" /EC_number="2.3.1.16" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: Thiolase; KEGG: xtr:100490800 3-ketoacyl-CoA thiolase-like; PFAM: Thiolase, N-terminal; Thiolase, C-terminal" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004386570.1" /db_xref="GI:330823267" /db_xref="GO:0005524" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10481659" /translation="MKQVQDAYIVAATRTPIGRSGRGYFKNTRPDDLLVAAIRGAMAQ VPTLDPKAIEDSIIGCSFPEGEQGMNMARIAMGLVFDHPVGGVTVNRFCASGVTAIQM AADRIRVGEADVLIAGGAESMSLVPMGGNKPSFNPEVFARDENVGIAYGMGLTAEKVA QQWKVSREAQDAFALESHLRAVKAQQAGEFTDEITPFEIVERSPNLATGEVETRKRTV SLDEGPRPDTTREALAKLKPVFAARGSVTAGNSSQTSDGAGALILASEKAVKQFGLVP LARFVSYAARGVPPEIMGIGPIEAIPAALRYAGLQSQDIGWYELNEAFAAQSLAVMNT LGLDPAKVNPMGGAIALGHPLGATGAIRAATVVHALRRHKLKYGMVTMCVGTGQGAAG IFERV" misc_feature 660849..662039 /locus_tag="Alide2_0638" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK09052" /db_xref="CDD:181626" misc_feature 660870..662036 /locus_tag="Alide2_0638" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(660927..660929,661011..661013,661056..661058, 661065..661067,661074..661076,661107..661118, 661140..661142,661161..661166,661173..661175, 661218..661220,661695..661697,661701..661703, 661707..661709,661767..661769,662004..662009) /locus_tag="Alide2_0638" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(661125..661127,661905..661907,661995..661997) /locus_tag="Alide2_0638" /note="active site" /db_xref="CDD:29411" gene 662086..662919 /locus_tag="Alide2_0639" /db_xref="GeneID:10481660" CDS 662086..662919 /locus_tag="Alide2_0639" /inference="similar to AA sequence:KEGG:Dtpsy_0576" /note="KEGG: dia:Dtpsy_0576 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386571.1" /db_xref="GI:330823268" /db_xref="GeneID:10481660" /translation="MTSHHSIHPLDEALALASETTGQYTGRTTPGYWNMVGPFGGITA ATLLQAVMQHPARLGEPLSLTVNYAGALGEGPFTLQATPVRTNRSTQHWTLSILQAGA DGAPVVTTTATVVTAVRRETWGATDTPMPAVPAPAQCKPVRLAFRSEWLRRYEMRPVT GELPTQWDDSGHTSMTQLWMRDAPARPLDFCALAAMADIFFPRVWLRRARQVPAGTVS ITVYFHAGGDLLAQTGTGYLLGQARAQEFRNGFFDQTALLWNEAGIVLATSHQIVYYK E" misc_feature <662473..662898 /locus_tag="Alide2_0639" /note="Acyl-CoA thioesterase [Lipid metabolism]; Region: TesB; COG1946" /db_xref="CDD:32129" gene 662927..663703 /locus_tag="Alide2_0640" /db_xref="GeneID:10481661" CDS 662927..663703 /locus_tag="Alide2_0640" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: dia:Dtpsy_0577 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004386572.1" /db_xref="GI:330823269" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10481661" /translation="MSNTSQDILVHDEGGVRTITFNRVERKNSITTAMYAQLADAFET AAQDAAVRVVVLQGDVAVFSAGNDIGDFLQQPPSTQDAPVFRFLRAIATFPKPVVAAV CGPAVGIGTTMLLHCDLVYAGDNAAFSMPFVNLGLCPEAGSSLLVPQMLGYHRAAEAL LLGEPFMAEAALEVGLVNRVVPPTECNAIAQAQARKLAAKPLSALIETKRLLKKGQTA AVLERMAEEGASFGRMLREPAAREAFSAFMEKRHPDFSKC" misc_feature 662936..663700 /locus_tag="Alide2_0640" /note="enoyl-CoA hydratase; Provisional; Region: PRK06688" /db_xref="CDD:180658" misc_feature 662948..663481 /locus_tag="Alide2_0640" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(663005..663007,663011..663013,663107..663109, 663119..663133,663239..663241,663245..663253, 663317..663322,663329..663331) /locus_tag="Alide2_0640" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(663125..663127,663251..663253) /locus_tag="Alide2_0640" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(663191..663193,663215..663217,663278..663289, 663323..663334,663350..663352,663356..663364, 663368..663373,663386..663391,663395..663400, 663404..663409,663416..663418,663449..663451, 663458..663460) /locus_tag="Alide2_0640" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 664048..664608 /locus_tag="Alide2_0641" /db_xref="GeneID:10481662" CDS 664048..664608 /locus_tag="Alide2_0641" /inference="protein motif:PFAM:PF04519" /note="PFAM: Protein of unknown function DUF583; KEGG: dia:Dtpsy_0579 protein of unknown function DUF583" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386573.1" /db_xref="GI:330823270" /db_xref="InterPro:IPR007607" /db_xref="GeneID:10481662" /translation="MAVQNPFFGKRETESFQPRQPSSSVLGGSVTSTAGASSNAAAAK PAASNTTESGGSKLTVGPNIKLKGVEITDCDTLVVEGTVEATMDSRVIQIAEQGAFHG TAEIDIAEIHGEFDGTLTVREKLVIFSTGKVSGKIRYGKVVIEEGGQLSGEISVGVGS VRTQAAPSSSASPAASPSPSPALAAA" sig_peptide 664048..664176 /locus_tag="Alide2_0641" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.656) with cleavage site probability 0.401 at residue 43" misc_feature 664213..664509 /locus_tag="Alide2_0641" /note="Polymer-forming cytoskeletal; Region: Bactofilin; cl09137" /db_xref="CDD:195802" gene complement(664660..665085) /locus_tag="Alide2_0642" /db_xref="GeneID:10481663" CDS complement(664660..665085) /locus_tag="Alide2_0642" /inference="protein motif:PFAM:PF03061" /note="PFAM: Thioesterase superfamily; KEGG: ajs:Ajs_0601 thioesterase superfamily protein" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004386574.1" /db_xref="GI:330823271" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10481663" /translation="MSQDRTCTHTQLPADKELVLKVMPMPADTNNNGDIFGGWVMAQV DLAGSVLPARRIQGRMATVAVNEFVFKQPVRVGDLLSFFAEVKRVGNTSITVQVEVYA EHIRTQGRYLKVTEASLTYVAIDENGRPRPIPKLPGDAP" misc_feature complement(664684..665055) /locus_tag="Alide2_0642" /note="Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain...; Region: BFIT_BACH; cd03442" /db_xref="CDD:48037" gene 665128..666939 /locus_tag="Alide2_0643" /db_xref="GeneID:10481664" CDS 665128..666939 /locus_tag="Alide2_0643" /EC_number="3.6.3.44" /inference="protein motif:PRIAM:3.6.3.44" /note="PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: ajs:Ajs_0602 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Xenobiotic-transporting ATPase" /protein_id="YP_004386575.1" /db_xref="GI:330823272" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481664" /translation="MRRYGEAPAPDSPRIRSDGATLRRLLPYLWEYKGRVLAAIAFMV GAKLANVGVPLLLKRLVDAMALPAGSPTALLVVPVGLLLAYGGLRLANSVFSELRELV FAKATHGAARAIALKTFEHLHALSLRFHLERQTGGMTRDIERGVRGIESLVSFALFNL GATLIEVLLVLFILARQFDVWFAAITLSALALYIAFTVGVTQWRIQFRRQANLFDSAA HSKAIDSLLNYETVKYFNNEAFEARRYDESLEQLRRAQLKSRSTLSMLNSGQQLIIAV GLVAMLWRATEGVAAGRMTLGDLVMVNAFMIQIYIPLNFLGVIYREIKQNLTDLDKMF TLMDKEQEVADAPGAVALAGLDAPTVRFEDVHFAYDPARPILRGVSLTIPAGKTVAVV GPSGAGKSTLSRLLYRFYDLQDGRITIAGQDIRAVTQQSLRRAIGIVPQDTVLFNDTV AYNIAYGRTDATQAEVEQAARAAHIHDFIMSTPQGYATMVGERGLKLSGGEKQRVAIA RTLLKNPPILIFDEATSALDSANERAIQAELRQVAQGKTTLVIAHRLSTVVDAHEIVV MEAGRIVERGTHAALLAQGGRYASMWALQQNSSENTF" misc_feature 665233..666054 /locus_tag="Alide2_0643" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature 665419..666903 /locus_tag="Alide2_0643" /note="ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]; Region: ATM1; COG5265" /db_xref="CDD:34862" misc_feature 666205..666912 /locus_tag="Alide2_0643" /note="ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to...; Region: ABCC_ATM1_transporter; cd03253" /db_xref="CDD:73012" misc_feature 666304..666327 /locus_tag="Alide2_0643" /note="Walker A/P-loop; other site" /db_xref="CDD:73012" misc_feature order(666313..666318,666322..666330,666448..666450, 666688..666693,666784..666786) /locus_tag="Alide2_0643" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73012" misc_feature 666439..666450 /locus_tag="Alide2_0643" /note="Q-loop/lid; other site" /db_xref="CDD:73012" misc_feature 666616..666645 /locus_tag="Alide2_0643" /note="ABC transporter signature motif; other site" /db_xref="CDD:73012" misc_feature 666676..666693 /locus_tag="Alide2_0643" /note="Walker B; other site" /db_xref="CDD:73012" misc_feature 666700..666711 /locus_tag="Alide2_0643" /note="D-loop; other site" /db_xref="CDD:73012" misc_feature 666772..666792 /locus_tag="Alide2_0643" /note="H-loop/switch region; other site" /db_xref="CDD:73012" gene 666989..667321 /locus_tag="Alide2_0644" /db_xref="GeneID:10481665" CDS 666989..667321 /locus_tag="Alide2_0644" /inference="protein motif:PFAM:PF03819" /note="PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core; KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase" /codon_start=1 /transl_table=11 /product="MazG nucleotide pyrophosphohydrolase" /protein_id="YP_004386576.1" /db_xref="GI:330823273" /db_xref="InterPro:IPR004518" /db_xref="GeneID:10481665" /translation="MDVKALQRQLRDFAAARDWQPYHTPKNLAMALMVEAAELLELFQ WLTPEESRSLTIDVADKERVADEIADVLLYLLQLADHTGVDLEQAVLAKLAKNARKHP VAGGREYK" misc_feature 666989..667294 /locus_tag="Alide2_0644" /note="MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345" /db_xref="CDD:193780" gene complement(667376..668407) /locus_tag="Alide2_0645" /db_xref="GeneID:10481666" CDS complement(667376..668407) /locus_tag="Alide2_0645" /inference="protein motif:TFAM:TIGR00787" /note="KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter subunit DctP" /protein_id="YP_004386577.1" /db_xref="GI:330823274" /db_xref="InterPro:IPR004682" /db_xref="InterPro:IPR018389" /db_xref="GeneID:10481666" /translation="MKLRTFLTTAVAAAAALAFGTPALAQNYKSEYRMSLVLGPAFPW GKGGEIWAAKVKEKTQGRINIKLYPGVSLIQGDQTREFSALRQGVIDMAIGSTINWSP QVKQLNLFSLPFLFPDYAAVDAVTQGPVGKQIFQTLDKSGVVPLAWGENGYREISNSK HAIKSPADLKGLKIRVVGSPLFLDTFTALGANPTQMSWTDAQPAFASGAVDGQENPIA VYMAAKLHTVAQKHITMWGYVNDPLIFVVNKDVWNSWTPADREIVKQAAIDAGKEEIA IARKGMVEEGKPLLKDIAANGVTVTQLSPAEREAFVKATRPVFDKWKGQIGADLVSAA EKAIAARKK" sig_peptide complement(668330..668407) /locus_tag="Alide2_0645" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 26" misc_feature complement(667388..668332) /locus_tag="Alide2_0645" /note="Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl00710" /db_xref="CDD:153950" gene complement(668431..669729) /locus_tag="Alide2_0646" /db_xref="GeneID:10481667" CDS complement(668431..669729) /locus_tag="Alide2_0646" /inference="protein motif:TFAM:TIGR00786" /note="KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter subunit DctM" /protein_id="YP_004386578.1" /db_xref="GI:330823275" /db_xref="InterPro:IPR004681" /db_xref="InterPro:IPR010656" /db_xref="GeneID:10481667" /translation="MIATLLFVAFLVLMFVGVPIGAALGLAGAAAIALANAETQWFGL LAVPQNFYAGLGKYPLLAIPMFVLVGSIFDRSGVALRLVNFAVSIVGRGPGMLPLVAI TVAMFLGGISGSGPANAAAVGGVMIAAMSRAGYPGSFSASVVGAAAATDILIPPSVAF IIYSVLVPGASVPALFAAGMVPGVLAGVALIAPAVWMARRHRMGALEADMPRPPFWRS LREASWGLAAPVLILGGMRAGWFTPTEAAVVAVFYGLFVGMAIHRTIGVRDLYVILRE AGELSAVILVVVSLAGIFAFSLSTLGVIDPVAHAIVNSGLGEYGVLALLILLLITVGM FLDGISIFLIFVPLLLPIMQHYHWDPVWFGVILTLKVALGQFTPPLAVNLMVSCRIAG VRMESTVRWVGPMLLAMFIVMVAVIAFPQLALWLPARLGY" sig_peptide complement(669616..669729) /locus_tag="Alide2_0646" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.961) with cleavage site probability 0.439 at residue 38" misc_feature complement(668464..669600) /locus_tag="Alide2_0646" /note="DctM-like transporters; Region: DctM; pfam06808" /db_xref="CDD:148424" misc_feature complement(668437..669579) /locus_tag="Alide2_0646" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene complement(669726..670307) /locus_tag="Alide2_0647" /db_xref="GeneID:10481668" CDS complement(669726..670307) /locus_tag="Alide2_0647" /inference="protein motif:PFAM:PF04290" /note="PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ" /codon_start=1 /transl_table=11 /product="TRAP dicarboxylate transporter subunit DctQ" /protein_id="YP_004386579.1" /db_xref="GI:330823276" /db_xref="InterPro:IPR007387" /db_xref="GeneID:10481668" /translation="MSSHPTPGPAEHAAPAGAADPSEPRSLRIEDWLTVIVMALLALI TFANVIVRYFTDSSFAWTEEISVFLMIVLALVAGSAAVARDRHIRIEFFCESGSAMRR RRLAQLGALLVALLFAVIAVLSMRVVWDDWRFEETSPGIGVPQWWYSVWLPVLSLLIA WRAIGLLVRRTRQSDVEYLLDEAGDDGNGEPRP" misc_feature complement(669789..670187) /locus_tag="Alide2_0647" /note="Tripartite ATP-independent periplasmic transporters, DctQ component; Region: DctQ; cl01181" /db_xref="CDD:194064" gene 670474..671421 /locus_tag="Alide2_0648" /db_xref="GeneID:10481669" CDS 670474..671421 /locus_tag="Alide2_0648" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0586 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386580.1" /db_xref="GI:330823277" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481669" /translation="MRAMETKWLEDFVSLAETRSFSRSAQLRHVTQPAFSRRIQALEA WAGTDLVDRSSYPTRLTAAGTTLYDQALEVLQALQNTRAILRAHTSAGTDMIEFAVPH TLAFTFFPAWVSAVRADFGPLKSRLIALNVHDAVLRLVEGGCDLLISYHHPSQPLQLD AERYEMVTLGQEVLAPYAKAGPDGQPLFSLPGRAGEPLPYLAYAPGAYLGRVTELILK QAGTAIHLDRVYETDMAEGLKAMALEGHGVAFLPYSAVKKELRSRKLASAAPPGVEDL QMVMEVRAYREKPSRKEPAKSLAQALWTYLQAQGGKNPI" misc_feature 670483..671379 /locus_tag="Alide2_0648" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 670492..670665 /locus_tag="Alide2_0648" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 670768..671286 /locus_tag="Alide2_0648" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature order(670801..670806,670810..670815,670822..670824, 670834..670836,670840..670860,671158..671175, 671191..671196,671200..671205) /locus_tag="Alide2_0648" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 671625..672524 /locus_tag="Alide2_0649" /db_xref="GeneID:10481670" CDS 671625..672524 /locus_tag="Alide2_0649" /inference="protein motif:PFAM:PF00497" /note="KEGG: dia:Dtpsy_0588 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3" /codon_start=1 /transl_table=11 /product="ABC transporter periplasmic subunit" /protein_id="YP_004386581.1" /db_xref="GI:330823278" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10481670" /translation="MKKHLLAAAITVLAAGSAIAQANDTLAKIKSSGAITLGVRESSG ALAYTLGDGKYVGFHTEMAERVARDLQKKLGLSKLEIKYQPVTSQNRIPLVVNGTVDL ECGSTTNNLARQKDVAFANTTYVEEVRIAVKANSGINDIKDLNGKTIVTTTGTTSVQT LRKNKRAEGMNFREVMGKDHADSFLMLETGRADAFIMDGSILAGNISKSKSPNDFKIV GEALSVEPIACMLRKDDPAFKKAVDESIVAQIKDGTLAKSYDKWFMQPIPPNNTKVGL PLSPATKQAWEHPNDKPMEDYQK" sig_peptide 671625..671693 /locus_tag="Alide2_0649" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.767 at residue 23" misc_feature 671727..672419 /locus_tag="Alide2_0649" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature 671727..672413 /locus_tag="Alide2_0649" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(671751..671753,671886..671888,671961..671963, 672090..672092,672216..672218) /locus_tag="Alide2_0649" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(672165..672167,672177..672179,672195..672197) /locus_tag="Alide2_0649" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 672297..672314 /locus_tag="Alide2_0649" /note="hinge residues; other site" /db_xref="CDD:29040" gene 672628..673380 /locus_tag="Alide2_0650" /db_xref="GeneID:10481671" CDS 672628..673380 /locus_tag="Alide2_0650" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: dia:Dtpsy_0589 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter inner membrane subunit" /protein_id="YP_004386582.1" /db_xref="GI:330823279" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10481671" /translation="MSWDWQVFCQDTITQEVAQSCFGKGGDITYLDWLLSAWGWTVSV SLLALAIALVVGSLIGTLRTLPDSPWVVRLGNAWVEFFRNIPLLVHIFLWYHVIPAIF PAMKSLPGFVLVVFALGFFTSARIAEQVRSGIQALPRGQRYAGMAMGFTTVQYYRYVL LPMAFRIIIPPLTSETMNIFKNSSVAFAVSVSELTMYAMQVQEETSRGIEVYLLVTAL YVVSALAINRIMAFIEKRSRVPGMIAAGGGGH" misc_feature 672832..673305 /locus_tag="Alide2_0650" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(672850..672861,672865..672894,672901..672906, 672910..672912,672985..672990,672994..672996, 673000..673002,673009..673014,673018..673020, 673030..673035,673042..673044,673093..673095, 673135..673140,673147..673149,673168..673179, 673186..673191,673228..673233,673261..673266, 673273..673278,673282..673287,673294..673299) /locus_tag="Alide2_0650" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(672868..672912,673168..673185) /locus_tag="Alide2_0650" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(672910..672912,672970..672972,673186..673188, 673222..673224,673231..673233,673261..673263) /locus_tag="Alide2_0650" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(673045..673083,673099..673104,673114..673116) /locus_tag="Alide2_0650" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 673382..674053 /locus_tag="Alide2_0651" /db_xref="GeneID:10481672" CDS 673382..674053 /locus_tag="Alide2_0651" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: ctt:CtCNB1_4180 glutamate/aspartate transport systempermease protein GltK; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter inner membrane subunit" /protein_id="YP_004386583.1" /db_xref="GI:330823280" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10481672" /translation="MLMHIDWSFLSWELLRGFVLKGFIFSMVLTVIATLGGVFFGTLL ALMRLSGKKWLMAPATIYVNGMRSIPLVMVILWFFLLVPLIIGRPIGAEASAIITFVA FEAAYFSEIMRAGIQSVPRGQVFAGQALGMTYSQNMKLVVLPQAFRNMLPVLLTQTII LFQDTSLVYAIGAYDMLKGFDVAGKNFGRPVEAYLAAAVAYFVICYSLSWAVKRLHKK IAIIR" misc_feature 673436..674035 /locus_tag="Alide2_0651" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature 673448..674011 /locus_tag="Alide2_0651" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(673496..673501,673508..673513,673526..673528, 673556..673567,673571..673600,673607..673612, 673616..673618,673685..673690,673694..673696, 673700..673702,673709..673714,673718..673720, 673730..673735,673742..673744,673793..673795, 673835..673840,673847..673849,673868..673879, 673886..673891,673928..673933,673961..673966, 673973..673978,673982..673987,673994..673999, 674006..674011) /locus_tag="Alide2_0651" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(673574..673618,673868..673885) /locus_tag="Alide2_0651" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(673616..673618,673670..673672,673886..673888, 673922..673924,673931..673933,673961..673963) /locus_tag="Alide2_0651" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(673745..673783,673799..673804,673814..673816) /locus_tag="Alide2_0651" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 674078..674815 /locus_tag="Alide2_0652" /db_xref="GeneID:10481673" CDS 674078..674815 /locus_tag="Alide2_0652" /EC_number="3.6.3.28" /inference="protein motif:PRIAM:3.6.3.28" /note="PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0591 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="phosphonate-transporting ATPase" /protein_id="YP_004386584.1" /db_xref="GI:330823281" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481673" /translation="MIELKNVSKWYGSFQVLSDCSTSIQKGEVVVVCGPSGSGKSTLI KTINALEPIQKGEIWVDGTAVHDPKTDLPKLRSRVGMVFQHFELFPHLSVTENLTIAQ IKVLGRSPDDAKKRGLKMLDRVGLTAHKDKFPGQLSGGQQQRVAIARALSMDPIVMLF DEPTSALDPEMVGEVLDVMMGLAHEGMTMMCVTHEMGFAKKVSNRVIFMDVGGKILED CSKEEFFGNPDARQPRTKDFLNKILQH" misc_feature 674078..674806 /locus_tag="Alide2_0652" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature 674081..674722 /locus_tag="Alide2_0652" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 674177..674200 /locus_tag="Alide2_0652" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(674186..674191,674195..674203,674327..674329, 674558..674563,674657..674659) /locus_tag="Alide2_0652" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 674318..674329 /locus_tag="Alide2_0652" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 674486..674515 /locus_tag="Alide2_0652" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 674546..674563 /locus_tag="Alide2_0652" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 674570..674581 /locus_tag="Alide2_0652" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 674645..674665 /locus_tag="Alide2_0652" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene complement(674921..675955) /locus_tag="Alide2_0653" /db_xref="GeneID:10481674" CDS complement(674921..675955) /locus_tag="Alide2_0653" /EC_number="4.3.1.12" /inference="protein motif:PRIAM:4.3.1.12" /note="KEGG: dia:Dtpsy_0592 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin" /codon_start=1 /transl_table=11 /product="Ornithine cyclodeaminase" /protein_id="YP_004386585.1" /db_xref="GI:330823282" /db_xref="InterPro:IPR003462" /db_xref="GeneID:10481674" /translation="MTRFIDLPTLAALVHDMGAAHFLCELADEIHTDFLRWSAFDKTA RTASHSPHGVIELMPVSDDTLYSFKYVNGHPGNPACGLPTVMAFGMLAEVATGLPLLL SELTLATALRTAATSALAAQALARSGSRSMALIGNGAQAEFQALAFHALLGIKELRVF DTAPDATDKLLRNLARTPGLKMIRAASVAEAVRGADIVTTATAAKRHARIITPDMLEP GMHLNAVGGDCPGKTELHPGVLRQARIVVEYAPQSRVEGEIQQLAEDHPVTELWQILS GQASGREHAGQVTVFDSVGFALEDHAALRFIHRQALARGLGADLALVPTDGDPRDLFG RTRSHLRRVV" misc_feature complement(674924..675955) /locus_tag="Alide2_0653" /note="ornithine cyclodeaminase; Validated; Region: PRK07589" /db_xref="CDD:181052" misc_feature complement(675029..>675751) /locus_tag="Alide2_0653" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(676016..676837) /locus_tag="Alide2_0654" /db_xref="GeneID:10481675" CDS complement(676016..676837) /locus_tag="Alide2_0654" /inference="protein motif:TFAM:TIGR01484" /note="KEGG: ajs:Ajs_0616 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3" /codon_start=1 /transl_table=11 /product="HAD superfamily hydrolase" /protein_id="YP_004386586.1" /db_xref="GI:330823283" /db_xref="GO:0003824" /db_xref="InterPro:IPR006379" /db_xref="InterPro:IPR013200" /db_xref="GeneID:10481675" /translation="MQPLALWQPPRIAGLLTDIDDTLTTEGAITPDALAALADLKAAG LHVIPITGRPVGWSEPFAQAWPVDAIVAENGAVALLPGSSKQTGSQSAPDRRMQLSKI YQQDDATRAANYARMQQVLADIEARVPGARRATDSPGRECDIAIDHSEFTHLPQAAID ECVRIMRAAGMNATVSSIHINGWYGAHDKLEGARWIVRELLSRALDDELGQWVYVGDS TNDQRMFEHFPHSVGVANIARFVPQLSHLPRYVTQSERGAGFAELARAILNGQAR" misc_feature complement(676025..676702) /locus_tag="Alide2_0654" /note="Predicted hydrolases of the HAD superfamily [General function prediction only]; Region: Cof; COG0561" /db_xref="CDD:30907" gene complement(676840..678465) /locus_tag="Alide2_0655" /db_xref="GeneID:10481676" CDS complement(676840..678465) /locus_tag="Alide2_0655" /inference="protein motif:TFAM:TIGR00503" /note="KEGG: xtr:100494427 peptide chain release factor 3-like; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2" /codon_start=1 /transl_table=11 /product="peptide chain release factor 3" /protein_id="YP_004386587.1" /db_xref="GI:330823284" /db_xref="GO:0005525" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004548" /db_xref="InterPro:IPR005225" /db_xref="GeneID:10481676" /translation="MSYASETRRRRTFAIISHPDAGKTTLTEKLLLFSGAIQIAGAVK GRKASRHATSDWMEIEKQRGISVASSVMQMSYRDHVINLLDTPGHKDFSEDTYRVLTA VDSALMVIDAANGVEAQTRRLIEVCRQRDTPIITFVNKMDREVRDPLDILDEVERELG MPCCPMTWPVGQGKNFGGIIDLRTQSMTVFQAGSEKRPEDFEVIPLAEVDKLRARFGQ AYDDAIESMELAVGASIAWDHQEFLAARLTPVFFGSGVNNFGVMEVLNAVVDMSPPPG PRVAFTEVNRQREERTVHPEDESFAGVVFKVQANMDSNHRDRIAFVRVASGKYTPGMK MKVQRTGKELRPTSVVTFMSQRREAVDEAYAGDIIGFTTHGGVQLGDTITDGPSLQFT GLPFFAPEMFMTVVLKNPLRTKQLQQGLMQLGEEGAIQVFKPEAGGNMLLGAVGQLQF EVVQHRLKTEYDCDVRLEGCQYTGARWITADTPAELREFENAYPLRMARDAADTLAYL CTSPYDVRLAQERFPKIHFHPLREHAGLALGTS" misc_feature complement(676867..678465) /locus_tag="Alide2_0655" /note="peptide chain release factor 3; Provisional; Region: prfC; PRK00741" /db_xref="CDD:179105" misc_feature complement(677641..678441) /locus_tag="Alide2_0655" /note="RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and...; Region: RF3; cd04169" /db_xref="CDD:133369" misc_feature complement(678394..678417) /locus_tag="Alide2_0655" /note="G1 box; other site" /db_xref="CDD:133369" misc_feature complement(order(678004..678006,678016..678018, 678124..678129,678196..678201,678253..678258, 678370..678375,678382..678384,678391..678396, 678406..678408,678412..678414)) /locus_tag="Alide2_0655" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133369" misc_feature complement(order(677698..677706,678040..678042, 678046..678051,678391..678408)) /locus_tag="Alide2_0655" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133369" misc_feature complement(678256..678291) /locus_tag="Alide2_0655" /note="Switch I region; other site" /db_xref="CDD:133369" misc_feature complement(678268..678270) /locus_tag="Alide2_0655" /note="G2 box; other site" /db_xref="CDD:133369" misc_feature complement(678202..678213) /locus_tag="Alide2_0655" /note="G3 box; other site" /db_xref="CDD:133369" misc_feature complement(678151..678207) /locus_tag="Alide2_0655" /note="Switch II region; other site" /db_xref="CDD:133369" misc_feature complement(678040..678051) /locus_tag="Alide2_0655" /note="G4 box; other site" /db_xref="CDD:133369" misc_feature complement(677698..677706) /locus_tag="Alide2_0655" /note="G5 box; other site" /db_xref="CDD:133369" misc_feature complement(677308..677562) /locus_tag="Alide2_0655" /note="Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding...; Region: Translation_Factor_II_like; cl02787" /db_xref="CDD:194443" gene complement(678568..679338) /locus_tag="Alide2_0656" /db_xref="GeneID:10481677" CDS complement(678568..679338) /locus_tag="Alide2_0656" /inference="protein motif:PFAM:PF00106" /note="PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0646 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_004386588.1" /db_xref="GI:330823285" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10481677" /translation="MDPKDKVAIVTGGASGIGRALAQRLAAEGARVVVADLHLEPVQA VADEVKGMAVRCDVSREADIQALVAATRERYGRVDAYFSNAGILGRPGGIELEDPLWE AMWHIHGMAHVWAARAVVPAMAARGEGFFLVTASAAGLLSIVESAPYAVTKHAAVAFA EWLRIAYGRRGVQVACLCPQAVQTAMISDGGGSAGVDGVLPPGQVAGDVLQAMGSGQF LVLPHAEVAQYYAAKAQNPDRWLGGMQKHYARHMQQQG" misc_feature complement(<678778..679317) /locus_tag="Alide2_0656" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature complement(678571..679311) /locus_tag="Alide2_0656" /note="short chain dehydrogenase; Provisional; Region: PRK05650" /db_xref="CDD:168153" misc_feature complement(order(678784..678789,678793..678804, 678880..678882,678892..678894,678931..678939, 679018..679020,679081..679089,679165..679173, 679225..679233,679288..679299,679303..679305)) /locus_tag="Alide2_0656" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature complement(order(678880..678882,678892..678894, 678931..678933,679015..679017)) /locus_tag="Alide2_0656" /note="active site" /db_xref="CDD:187544" gene 679580..681010 /locus_tag="Alide2_0657" /db_xref="GeneID:10481678" CDS 679580..681010 /locus_tag="Alide2_0657" /EC_number="3.3.1.1" /inference="protein motif:TFAM:TIGR00936" /note="TIGRFAM: Adenosylhomocysteinase; KEGG: dia:Dtpsy_0597 S-adenosyl-L-homocysteine hydrolase; PFAM: Adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding" /codon_start=1 /transl_table=11 /product="adenosylhomocysteinase" /protein_id="YP_004386589.1" /db_xref="GI:330823286" /db_xref="GO:0004013" /db_xref="InterPro:IPR000043" /db_xref="InterPro:IPR015878" /db_xref="GeneID:10481678" /translation="MSAVLKASPDSAIADISLADWGRKEIRIAETEMPGLMAVREEFA AQQPLKGARITGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQDHAAAAIAATGVP VFAVKGESLEDYWDYTHRIFEFGPKGSADEGPNMILDDGGDATMLMHLGMRAEKDPSV LANPGSEEEKIVFAAIRAKLAEDATWYSRKSARIIGVTEETTTGVHRLNEMSAKGTLK FRAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKVAVVCGYGDVGKGSAQAL RALSAQVWVTEIDPINALQAAMEGYRVVTMEYAAPRADIFVTTTGNRDVITFEHMQAM KDESIVCNIGHFDNEIQVAKLEAHCRWEEIKPQVDHITFPDGKKIILLAKGRLVNLGC ATGHPSFVMSNSFANQTLAQIELYTRPDAYEAGKVYVLPKILDEKVARLHLKKVGAQL TELTDAQAAYIGVNKSGPYKPDTYRY" misc_feature 679598..680989 /locus_tag="Alide2_0657" /note="S-adenosyl-L-homocysteine hydrolase; Provisional; Region: PRK05476" /db_xref="CDD:180110" misc_feature 679625..680983 /locus_tag="Alide2_0657" /note="S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado...; Region: AdoHcyase; cd00401" /db_xref="CDD:29522" misc_feature order(679649..679651,679670..679675,680195..680197, 680204..680209,680255..680257,680261..680263, 680276..680278,680288..680290,680297..680302, 680321..680326,680333..680335,680339..680353, 680414..680419,680438..680464,680468..680479, 680486..680491,680540..680551,680582..680590, 680621..680623,680666..680668,680759..680761, 680777..680779,680864..680866,680906..680908, 680915..680920,680924..680932,680936..680938, 680945..680950,680957..680962) /locus_tag="Alide2_0657" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:29522" misc_feature order(679754..679756,679760..679762,679766..679768, 679997..679999,680177..680182,680267..680269, 680279..680281,680765..680767) /locus_tag="Alide2_0657" /note="active site" /db_xref="CDD:29522" misc_feature order(680180..680188,680282..680284,680369..680371, 680375..680383,680435..680443,680534..680539, 680552..680554,680606..680614,680738..680740, 680744..680746,680765..680767) /locus_tag="Alide2_0657" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:29522" gene 681117..682118 /locus_tag="Alide2_0658" /db_xref="GeneID:10481679" CDS 681117..682118 /locus_tag="Alide2_0658" /inference="protein motif:PFAM:PF01728" /note="PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ" /codon_start=1 /transl_table=11 /product="ribosomal RNA methyltransferase RrmJ/FtsJ" /protein_id="YP_004386590.1" /db_xref="GI:330823287" /db_xref="GO:0003676" /db_xref="GO:0008168" /db_xref="InterPro:IPR002877" /db_xref="GeneID:10481679" /translation="MRADVFLVEGGHAATRSQAQRLIAAGVQWRLASSLPWNRVAKNG DDIPAGAELQLLDAAEAKYLSRGGLKLEGALAATGIQVAGLRCLDVGQSTGGFTDCLL QHGAAQVVGVDVGQGQLHERLRADPRVIGVEGLNARHMTPETLLEACEEALSERVEAE PEDNDTQPEAPYAWMRNGGLVDDAYDDSQDAKEHEIEAFKAERATRARERAEGRLATL RRRLPGREDVAIPQAFGLVTGDLSFISLTLVLPALVPLLAPGGDLLMLVKPQFELQPG QVGKGGIVRDADLYAEVERRIRACCADLGLQVIGWHGSAIQGGDGNREFFIHARRAA" misc_feature 681117..>681581 /locus_tag="Alide2_0658" /note="Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: COG1189" /db_xref="CDD:31382" misc_feature 681303..>681422 /locus_tag="Alide2_0658" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" misc_feature <681912..682109 /locus_tag="Alide2_0658" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 682115..682942 /locus_tag="Alide2_0659" /db_xref="GeneID:10481680" CDS 682115..682942 /locus_tag="Alide2_0659" /EC_number="1.5.1.20" /inference="protein motif:TFAM:TIGR00676" /note="TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dia:Dtpsy_0599 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase" /codon_start=1 /transl_table=11 /product="5,10-methylenetetrahydrofolate reductase" /protein_id="YP_004386591.1" /db_xref="GI:330823288" /db_xref="InterPro:IPR003171" /db_xref="InterPro:IPR004620" /db_xref="GeneID:10481680" /translation="MSLPVSFEFFPPKTPEGADKLRAVRRQLYARAPQFCSVTYGAGG STQEGTFATVRAIIEEGVDAASHFSCIGATKAGVRQQLAELKAMGVKRLVALRGDLPS GYGLGGEFQYASDLVAFIRQETGRDFHIEVAAYPEMHPQARSPEADLQAFATKVRAGA DSAITQYFFNADAYSRFVDDARRLGVEIPIVPGIMPITGSSQLMRFSDACGAEIPRWI RLRLQGFGDDMASIRAFGLDVVGRLCEQLVRAGAPGLHFYTMNQSAATLALCERIGC" misc_feature 682127..682936 /locus_tag="Alide2_0659" /note="Methylenetetrahydrofolate reductase; Region: MTHFR; pfam02219" /db_xref="CDD:145399" misc_feature 682127..682933 /locus_tag="Alide2_0659" /note="Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine...; Region: MTHFR; cd00537" /db_xref="CDD:29637" misc_feature order(682232..682234,682313..682315,682400..682408, 682448..682453,682511..682513,682517..682519, 682529..682531,682535..682537,682556..682558, 682565..682567,682574..682579,682604..682606, 682610..682612,682886..682888) /locus_tag="Alide2_0659" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:29637" gene 682936..683688 /locus_tag="Alide2_0660" /db_xref="GeneID:10481681" CDS 682936..683688 /locus_tag="Alide2_0660" /inference="protein motif:TFAM:TIGR00413" /note="manually curated; TIGRFAM: Rare lipoprotein A, bacterial; KEGG: dia:Dtpsy_0601 rare lipoprotein A; PFAM: Barwin-related endoglucanase" /codon_start=1 /transl_table=11 /product="rare lipoprotein A" /protein_id="YP_004386592.1" /db_xref="GI:330823289" /db_xref="InterPro:IPR009009" /db_xref="InterPro:IPR012997" /db_xref="GeneID:10481681" /translation="MLERHRQAGAAMVHGMSLVRPSLLRRLLPAVCAAVLAGCAVQQP QPAAKSAPPTAAPPAPAAAAAPPARPAPREPALRMKPERRPGEGSGAPALRAPEPEAP VLLASGQASWYADSLHGRRTANGERYDREEFTAAHRSLPFGARLCVRSLVNGRTVIVR VNDRGPFTPGRIIDLSRAAAEELGMVGLGIKPVELWQLGADDEACPESLEPAAQGSGL GLDAEAAAKALQQPAPKAKAPAARKPRRNKRR" misc_feature 683257..683517 /locus_tag="Alide2_0660" /note="Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; cl04011" /db_xref="CDD:186611" gene complement(683689..684606) /locus_tag="Alide2_0661" /db_xref="GeneID:10481682" CDS complement(683689..684606) /locus_tag="Alide2_0661" /inference="protein motif:PFAM:PF04378" /note="PFAM: Protein of unknown function DUF519; KEGG: dia:Dtpsy_0602 protein of unknown function DUF519" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386593.1" /db_xref="GI:330823290" /db_xref="InterPro:IPR007473" /db_xref="GeneID:10481682" /translation="MRLATIGRMFSYRHAFHAGNHADVLKHTVLIATLQHLLQKDAAL TVLDTHAGAGLYRLDGDYASTSAESADGILRLVPPAAPAALAPALQDYVDMVRAFNQG EATRVYPGSPFIAQRLLRAQDRLKLFELHPTDARALAGNVAQLDAGRQVAVLAQDGFE GARQFLPPPSRRALVLCDPSYEIKSDYARVQDMLQDALKRFATGVYAVWYPIIPRPEA HELPRRLKTLAQKAGKSWLHATLTVKSGKTAPAGTAPGRRPGLPASGMFLINPPFTLD AALRAALPQMAELLAQDRHAAWTLEGGAP" misc_feature complement(683704..684576) /locus_tag="Alide2_0661" /note="Protein of unknown function (DUF519); Region: DUF519; cl04492" /db_xref="CDD:123118" gene 684783..686579 /locus_tag="Alide2_0662" /db_xref="GeneID:10481683" CDS 684783..686579 /locus_tag="Alide2_0662" /inference="protein motif:PFAM:PF00069" /note="KEGG: ajs:Ajs_0624 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain" /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase" /protein_id="YP_004386594.1" /db_xref="GI:330823291" /db_xref="GO:0004672" /db_xref="GO:0005524" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR017442" /db_xref="InterPro:IPR020635" /db_xref="GeneID:10481683" /translation="MSAVPRPSHADALPPGTRLGEFEVQALLGVGGFGMVYQAFDHSL QRCVAIKEYMPASLAGRADGHSLWVRSSSNEQSFQAGLASFVDEARLLARFDHPSLVK VFRFWEANHTAYMVMPLYRGMTLKQARAHMRTPPPEAWLRTLLWSVTSALRVLHDGQT LHRDISPDNIFLQDHGPPVLLDLGAARHAIGGGSHGHAAVLKVHYAPLEQYADASAEL GQGPWSDLYALGAVVHGCLCNDTPLPATLRAVRDRMVPFPRVARTVRRQFGIEYSRPF VEAIAQCLALQPQERPQSVADFVQAMGMAEAPAGLESFDFRDALGDIWVEPQSKDAQG VAVPMIDAMTLSQPQSAPLAVSAAQRAGEASTAVADAGAAPAFADTQVAPPPSRERPP RRRHRVRAQGRGHGTAAGQPGKADISSGAAAQVHRTGGQAPMMWAMAGSVAAMALVGS LWWMQRERAPHRTPESEIITELAEPAPPPGLMRATHEVTASALLHPADMGLAPAAEVA RPMPARREGEIPAPPPAPVAVQQAMPAPAPPAPRAAPPGPDEACASAGFFARPMCIHR ECQKAGMARHPVCVENRLRHEEQELQRQLYAQ" misc_feature 684846..685658 /locus_tag="Alide2_0662" /note="Protein kinase domain; Region: Pkinase; pfam00069" /db_xref="CDD:189373" misc_feature 684864..685478 /locus_tag="Alide2_0662" /note="Catalytic domain of Protein Kinases; Region: PKc; cd00180" /db_xref="CDD:173623" misc_feature order(684864..684878,684888..684890,684927..684929, 684933..684935,685083..685085,685131..685142, 685152..685154,685158..685160,685272..685274, 685278..685280,685284..685289,685293..685295, 685326..685328,685335..685337,685383..685394) /locus_tag="Alide2_0662" /note="active site" /db_xref="CDD:173623" misc_feature order(684864..684878,684888..684890,684927..684929, 684933..684935,685083..685085,685131..685142, 685152..685154,685272..685274,685278..685280, 685284..685289,685293..685295,685326..685328) /locus_tag="Alide2_0662" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature order(684876..684878,685152..685154,685158..685160, 685272..685274,685278..685280,685284..685286, 685335..685337,685383..685394) /locus_tag="Alide2_0662" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173623" misc_feature order(685323..685343,685383..685394) /locus_tag="Alide2_0662" /note="activation loop (A-loop); other site" /db_xref="CDD:173623" gene 686685..687152 /locus_tag="Alide2_0663" /db_xref="GeneID:10481684" CDS 686685..687152 /locus_tag="Alide2_0663" /inference="protein motif:TFAM:TIGR01066" /note="KEGG: xtr:100489998 50S ribosomal protein L13-like; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L13" /protein_id="YP_004386595.1" /db_xref="GI:330823292" /db_xref="GO:0003735" /db_xref="InterPro:IPR005822" /db_xref="InterPro:IPR005823" /db_xref="GeneID:10481684" /translation="MEKDRQTLSEEKLMTTFSAKPAEVVHEWFVIDATDKVLGRVASE VALRLRGKHKAIYTPHVDTGDFIVVVNASKLKVTGTKSLDKVYYRHSGYPGGITATNF RDLQAKHPGRALEKAVKGMLPKGPLGYAMIKKLKVYGGAEHPHSAQQPKPLAI" misc_feature 686766..687107 /locus_tag="Alide2_0663" /note="Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392" /db_xref="CDD:88313" misc_feature order(686793..686795,686799..686804,686811..686813, 686820..686822,686832..686834,686916..686918, 686922..686924,687006..687011,687027..687035, 687039..687047,687051..687059,687063..687065, 687069..687071,687081..687083,687090..687095) /locus_tag="Alide2_0663" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88313" misc_feature 687009..687011 /locus_tag="Alide2_0663" /note="L3 interface [polypeptide binding]; other site" /db_xref="CDD:88313" gene 687162..687554 /locus_tag="Alide2_0664" /db_xref="GeneID:10481685" CDS 687162..687554 /locus_tag="Alide2_0664" /inference="protein motif:PFAM:PF00380" /note="PFAM: Ribosomal protein S9; KEGG: xtr:100487283 30S ribosomal protein S9-like" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S9" /protein_id="YP_004386596.1" /db_xref="GI:330823293" /db_xref="GO:0003735" /db_xref="InterPro:IPR000754" /db_xref="GeneID:10481685" /translation="MIGEWNNGTGRRKSSVARVFLKKGSGKITVNGKDIQQYFGRETS IMITKQPLVLTGNVEAFDIQINVHGGGESGQAGAARHGITRALIDYDAALKPQLSAAG FVTRDAREVERKKVGLHSARRAKQFSKR" misc_feature 687162..687551 /locus_tag="Alide2_0664" /note="Ribosomal protein S9/S16; Region: Ribosomal_S9; cl00334" /db_xref="CDD:193774" gene 687718..688092 /locus_tag="Alide2_0665" /db_xref="GeneID:10481686" CDS 687718..688092 /locus_tag="Alide2_0665" /inference="protein motif:TFAM:TIGR00049" /note="KEGG: dia:Dtpsy_0608 iron-sulfur cluster insertion protein ErpA; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly accessory protein" /protein_id="YP_004386597.1" /db_xref="GI:330823294" /db_xref="GO:0005198" /db_xref="GO:0051536" /db_xref="InterPro:IPR000361" /db_xref="InterPro:IPR016092" /db_xref="GeneID:10481686" /translation="MSAVATPADTEMPAPILFTDSAAAKVAELIAEEGNPDLKLRVFV QGGGCSGFQYGFTFDEITNEDDTTMTKNGVSLLIDAMSYQYLVGAEIDYKEDLQGAQF VIKNPNAETTCGCGSSFSVQDQ" misc_feature 687736..688080 /locus_tag="Alide2_0665" /note="Iron-sulphur cluster biosynthesis; Region: Fe-S_biosyn; cl00400" /db_xref="CDD:189093" gene complement(688704..689828) /locus_tag="Alide2_0666" /db_xref="GeneID:10481687" CDS complement(688704..689828) /locus_tag="Alide2_0666" /inference="protein motif:HAMAP:MF_01270" /note="manually curated; HAMAP: Anhydro-N-acetylmuramic acid kinase; KEGG: dia:Dtpsy_0609 anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase" /codon_start=1 /transl_table=11 /product="Anhydro-N-acetylmuramic acid kinase" /protein_id="YP_004386598.1" /db_xref="GI:330823295" /db_xref="InterPro:IPR005338" /db_xref="GeneID:10481687" /translation="MDSRARWYFGLMSGTSLDGIDGVLAEFSEGKCRVALHGSAPLAP DLRAELLALNTSGNDELHRAALAANALARGYAGLVHGLLAQAGLPPEAVHAIGAHGQT VRHRPQAFGGTGYTLQLNNPALLAECTGITVVADFRSRDVAAGGQGAPLVPAFHQGVF GQAGRTVAVLNLGGISNLSILRAGGGVLGFDCGPANALMDHWCERHTGRPYDAAGAWA RSGRPIGALLHAMLAEPFLAAPPPKSTGRDLFNPRWLARQLDGTGSGDASPQDVQATL AEFTARSCAQELRRHAPECGLLIVCGGGALNQYLMERLQALLPGVGVEDSGCHGLPPL QVEAAAFAWLARQCMAGEAANLPSVTGARGARILGAIYPA" misc_feature complement(688707..689813) /locus_tag="Alide2_0666" /note="Uncharacterised protein family (UPF0075); Region: UPF0075; cl04217" /db_xref="CDD:194801" gene complement(689844..691226) /locus_tag="Alide2_0667" /db_xref="GeneID:10481688" CDS complement(689844..691226) /locus_tag="Alide2_0667" /inference="protein motif:PFAM:PF01551" /note="PFAM: Peptidase M23; KEGG: ajs:Ajs_0631 peptidase M23B" /codon_start=1 /transl_table=11 /product="peptidase M23" /protein_id="YP_004386599.1" /db_xref="GI:330823296" /db_xref="InterPro:IPR016047" /db_xref="GeneID:10481688" /translation="MPGVTLLNNGLTTACLLLLDRLKQSVQKHPKRITAAVATLLLTG GGGAFAVASFAPDPADLPVTTVSLPVQSLAGDEQLSSLVDMPPFALYRSDTTRGSDTA ESILQRLGVADPAAAAFLRGDGLVRQQLLGRSGRSISAETTDDHRLVRLTARWAPDEG SQFQRLVVERKGDGSFASRTETAPLTVGSRLAGGIIRSSLFAATDAASIPDAVAIQLA EVFSGDIDFRRALRKDDRFSVVYETLEADGEPLRSGRVLSAEFQNGGKTYSAIWFQPP GAGKGSYYTLDGQSMRRAYLTSPVEFSRVSSGFAMRLHPIHKTWRAHLGTDFAAPTGT AVRTVGDGVVDFAGVQNGYGNVIYVKHRNQHVTVYAHLSRIDVKKGQAVDQGQKIGAV GATGWATGPHLHFEFRVNGEHRDPMTIARESESAQPVPVAARPAFDRLAANMRVQLSS AEQIMQASAE" misc_feature complement(689970..>690929) /locus_tag="Alide2_0667" /note="putative peptidase; Provisional; Region: PRK11649" /db_xref="CDD:183257" misc_feature complement(689979..690266) /locus_tag="Alide2_0667" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene 691398..692630 /locus_tag="Alide2_0668" /db_xref="GeneID:10481689" CDS 691398..692630 /locus_tag="Alide2_0668" /EC_number="6.1.1.1" /inference="protein motif:TFAM:TIGR00234" /note="KEGG: ajs:Ajs_0632 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; manually curated; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; SMART: RNA-binding S4" /codon_start=1 /transl_table=11 /product="tyrosyl-tRNA synthetase" /protein_id="YP_004386600.1" /db_xref="GI:330823297" /db_xref="GO:0000166" /db_xref="GO:0004831" /db_xref="GO:0005524" /db_xref="InterPro:IPR002305" /db_xref="InterPro:IPR002307" /db_xref="InterPro:IPR002942" /db_xref="GeneID:10481689" /translation="MNQSAVTTFPVTDEVGRALEVSLRGVDELLPRQEWVQKLARSQA TGQPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHQVIFLIGDFTTLIGDPSGRNS TRPPLTAEQIKVNAETYYTQAAKVLDPARTEIRYNSEWSDALGARGMIELSAKYTVAR MMERNDFHQRFTDGSSISLHEFLYPLLQGYDSVALRSDLELGGTDQKFNLLMGRHLQQ EYGQEPQCVLTMPLLVGLDGVDKMSKSKNNYIGITEDANTMFAKVLSISDALMWDWYT LLSFKSLAEIAALKKEVEAGRNPKDAKVMLAKEITARFHSAAAADAAEQDFNNRSKGG IPDEIPELSLSGAPLGIGALLKQAGLAPSTSEANRLIDGGGVRVDGGVVSDKGLRLGA GTYVVQVGKRKFARVALG" misc_feature 691467..692624 /locus_tag="Alide2_0668" /note="tyrosyl-tRNA synthetase; Validated; Region: PRK05912" /db_xref="CDD:180311" misc_feature 691542..692336 /locus_tag="Alide2_0668" /note="catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805" /db_xref="CDD:173902" misc_feature order(691551..691553,691557..691565,691584..691586, 691590..691595,691947..691949,691959..691961, 691968..691970,691995..691997,692001..692006, 692013..692015,692091..692096,692118..692129) /locus_tag="Alide2_0668" /note="active site" /db_xref="CDD:173902" misc_feature 691584..691595 /locus_tag="Alide2_0668" /note="HIGH motif; other site" /db_xref="CDD:173902" misc_feature order(691665..691667,691674..691679,691833..691838, 691842..691850,691854..691859,691863..691874, 691878..691883,691935..691937,691941..691946, 691953..691958) /locus_tag="Alide2_0668" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173902" misc_feature 692118..692132 /locus_tag="Alide2_0668" /note="KMSKS motif; other site" /db_xref="CDD:173902" gene complement(692692..693657) /locus_tag="Alide2_0669" /db_xref="GeneID:10481690" CDS complement(692692..693657) /locus_tag="Alide2_0669" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0634 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386601.1" /db_xref="GI:330823298" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481690" /translation="MSAMPSPSHLRTRPVAVGHWRAFLAVARHLNFRAAADELALTQS AVSRQIQALEDEVGVPLFLRHTRAVELTGAGVQLHRAVAPALDRLDAAVRQVRQMAGR RSVAIATWASFASMWLIPRMEEFQCAHPDIDIRIDTSDSVVDLDTADVDLALRWATPG GSAPGAERLFGEQLAVVASPWLLKSMPPVRQPADVARFALIEAGDAHRQPYFDWITWG RWFEANGLGGLQPQRWLYLNYAQQIAQAALAGQGLALARMPLVAQSLAAGDLVEVLPG HRLDAPLAYWLVMGPRSGERPEVQAFRAWLLLQAEATRAAVGEPD" misc_feature complement(693433..693603) /locus_tag="Alide2_0669" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(692713..693597) /locus_tag="Alide2_0669" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(692740..693339) /locus_tag="Alide2_0669" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(692911..692916,692920..692925, 692941..692958,693244..693264,693268..693270, 693280..693282,693289..693294,693298..693303)) /locus_tag="Alide2_0669" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 693709..695133 /locus_tag="Alide2_0670" /db_xref="GeneID:10481691" CDS 693709..695133 /locus_tag="Alide2_0670" /EC_number="2.3.1.157" /inference="protein motif:TFAM:TIGR01173" /note="TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: ajs:Ajs_0636 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine pyrophosphorylase" /protein_id="YP_004386602.1" /db_xref="GI:330823299" /db_xref="GO:0000287" /db_xref="GO:0003977" /db_xref="GO:0019134" /db_xref="InterPro:IPR001451" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR005882" /db_xref="GeneID:10481691" /translation="MTQLDIIIMAAGKGTRMKSRIPKVLQRLAGRPLLHHVLDQAASL QARRVVVVTGHGATEVEAACAGGAGLRAGFDLQCVRQEPQLGTGHAVQQAVPRLAGDG TVVVLSGDVPLTQAATLRALVEASGGERLALLTVGLPDPSGYGRIVRGAGGTVLRIVE HKDASEAERAIGEVYSGIMAVPARLLAAWLARLTNDNAQGEYYLTDVVAMAVADGVPV VAHRITDALQVAGVNSPVQLAELERAHQQRQAQALMEQGVRLADPARFDLRDDARGGR AQLVCGQDVEIDVGCIFTGRVEIGEGARIGAYCHIGNAVIGAGAVIHPFTHIDGEKAG ASVGEGALVGPFARLRPGAQLGREVHVGNFVEIKNSQLADGAKANHLAYLGDATVGER VNYGAGSITANYDGANKHRTVIEADVHVGSNCVLVAPVTIGAGGTVGGGSTITKDTPP GALSVARGKQVSIAGWKRPARQAK" misc_feature 693718..695124 /locus_tag="Alide2_0670" /note="UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Region: glmU; TIGR01173" /db_xref="CDD:162235" misc_feature 693724..694422 /locus_tag="Alide2_0670" /note="N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540" /db_xref="CDD:133020" misc_feature order(693733..693741,693862..693864,693967..693969, 693976..693978,694030..694032,694036..694038) /locus_tag="Alide2_0670" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133020" misc_feature order(694036..694038,694405..694407) /locus_tag="Alide2_0670" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133020" misc_feature 694477..695088 /locus_tag="Alide2_0670" /note="N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353" /db_xref="CDD:100044" misc_feature order(694756..694758,694804..694806,694810..694812, 694846..694848,694855..694857,694888..694899, 694912..694920,694933..694935,694963..694965, 694969..694974,695023..695028,695077..695079) /locus_tag="Alide2_0670" /note="active site" /db_xref="CDD:100044" misc_feature order(694756..694758,694804..694806,694810..694812, 694846..694848,694855..694857,694888..694896, 694915..694917,694933..694935) /locus_tag="Alide2_0670" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100044" misc_feature order(694897..694899,694912..694914,694918..694920, 694969..694974,695023..695028,695077..695079) /locus_tag="Alide2_0670" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100044" gene 695130..695912 /locus_tag="Alide2_0671" /db_xref="GeneID:10481692" CDS 695130..695912 /locus_tag="Alide2_0671" /inference="protein motif:PFAM:PF02518" /note="KEGG: ajs:Ajs_0637 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_004386603.1" /db_xref="GI:330823300" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="GeneID:10481692" /translation="MTAEGGATRGGTAQDRLQAELDEARRQMAAMAAAHEAFLRGVSH DLRAPLRHVTSYGALVRELLQELPAQYPQVEEALGFLATMDASARRMGLMIDGLQAIA RAGRVPLRLQAVDLGAAVQQARALLGGAGDGVQWDVAPAMPAVRADAELFGQLLAQLL GNALKFTRGMAQARIAVHAEPDGQGRVRITVQDNGAGFDGARAQQLFGVFQRMHREAD FEGVGAGLALCAAIAQRHGATITAAAAPGAGCSIRLDWPGAA" misc_feature 695241..695438 /locus_tag="Alide2_0671" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(695241..695243,695253..695255,695265..695267, 695274..695276,695286..695288,695295..695297, 695367..695369,695379..695381,695388..695390, 695400..695402,695409..695411,695421..695423) /locus_tag="Alide2_0671" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 695259..695261 /locus_tag="Alide2_0671" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature <695649..>695837 /locus_tag="Alide2_0671" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(695700..695702,695706..695708,695712..695714, 695718..695723,695796..695807) /locus_tag="Alide2_0671" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature order(695712..695714,695718..695720,695796..695798, 695802..695804) /locus_tag="Alide2_0671" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(695941..696276) /locus_tag="Alide2_0672" /db_xref="GeneID:10481693" CDS complement(695941..696276) /locus_tag="Alide2_0672" /inference="similar to AA sequence:KEGG:Dtpsy_0617" /note="KEGG: dia:Dtpsy_0617 MerR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="MerR family transcriptional regulator" /protein_id="YP_004386604.1" /db_xref="GI:330823301" /db_xref="GeneID:10481693" /translation="MATTPNFLDNALAELLDEQARLTLDDLARSCCMAPGWVIERLEA GLLHGEQAGGHWQFTSATVVRARRLARLESTFDADPELAALTADLIEEVSALRQRLHQ LEARLGLMP" gene complement(696279..697274) /locus_tag="Alide2_0673" /db_xref="GeneID:10481694" CDS complement(696279..697274) /locus_tag="Alide2_0673" /inference="protein motif:PFAM:PF00226" /note="KEGG: dia:Dtpsy_0618 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal" /codon_start=1 /transl_table=11 /product="heat shock protein DnaJ domain-containing protein" /protein_id="YP_004386605.1" /db_xref="GI:330823302" /db_xref="GO:0031072" /db_xref="GO:0051082" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR002939" /db_xref="GeneID:10481694" /translation="MEFKDYYKILGVERDASAADIKKAYRKLARKYHPDVSKEADAAA RMAEVNEANAVLSDPKKRAAYDSLGREAPHRPGQDFRPPPNWDAGFEFTGAPGAEGMD SAEFSDFFEQLFGHAARAQRAQRGGGAQARGAEQPRQRGRDHHASIELDLRDAYHGAQ RTLTLHGARLDEGGHLVNEERQLQVTIPKGVREGQLIRLTGQGGPGLGGAPAGDLFLE VRFKPDARWRAEDRDVYQSVSVAPWEAELGGAIEVQTPGGNTVEVTVPPHWKSGRKLR LKGRGIPAATPGDLYLELHVSLPAAATPAQQQAYRAFAQAFPQFQPRAAHGTQGA" misc_feature complement(696381..697274) /locus_tag="Alide2_0673" /note="chaperone protein DnaJ; Provisional; Region: PRK14299" /db_xref="CDD:184613" misc_feature complement(697101..697262) /locus_tag="Alide2_0673" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cd06257" /db_xref="CDD:99751" misc_feature complement(order(697122..697127,697134..697139, 697146..697148,697170..697178)) /locus_tag="Alide2_0673" /note="HSP70 interaction site [polypeptide binding]; other site" /db_xref="CDD:99751" misc_feature complement(696387..696578) /locus_tag="Alide2_0673" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" gene complement(697379..697900) /locus_tag="Alide2_0674" /db_xref="GeneID:10481695" CDS complement(697379..697900) /locus_tag="Alide2_0674" /inference="protein motif:PFAM:PF01037" /note="KEGG: ajs:Ajs_0640 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type" /codon_start=1 /transl_table=11 /product="AsnC family transcriptional regulator" /protein_id="YP_004386606.1" /db_xref="GI:330823303" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR019887" /db_xref="InterPro:IPR019888" /db_xref="GeneID:10481695" /translation="MQYSFEYGNHMEYDFTPDAIDLQLLDLLQSDASLSNQALAERVH VSPPTCLRRVRRLQASGLIERQVALLQPDRLAALQGHGLTAIVEVSLDRQGAEHLAAF EARAVADPAVQQCWRVSPGPDFVLVVHARDMPGYLALSQRLFTQDANVRNVKAFFATH RAKFETKLPVALS" misc_feature complement(697511..>697780) /locus_tag="Alide2_0674" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 698005..699915 /locus_tag="Alide2_0675" /db_xref="GeneID:10481696" CDS 698005..699915 /locus_tag="Alide2_0675" /EC_number="2.6.1.16" /inference="protein motif:HAMAP:MF_00164" /note="PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: dia:Dtpsy_0620 glucosamine--fructose-6-phosphate aminotransferase" /codon_start=1 /transl_table=11 /product="glucosamine--fructose-6-phosphate aminotransferase" /protein_id="YP_004386607.1" /db_xref="GI:330823304" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR001347" /db_xref="InterPro:IPR005855" /db_xref="GeneID:10481696" /translation="MCGIVGAVSTRNIVPILVQGLQRLEYRGYDSCGVAVHEASLGGQ PAGGLRRARSTARVAELLAQVAHDGLQGATGIAHTRWATHGAPAVHNAHPHFSHGAGE APADAARAGRVALVHNGIIENHEELRAQLQARGYVFSSQTDTEVIAHLVDSLYDGDLF QAVRSAAGKLRGAFAIAVIHKDEPHRVVGARAGSPLVLGVGDGENFLASDAMALAGVT DQIVYLEEGDLVDLQLGRYWITGPDGQPLPADSRPVRTVHAHSGAAELGPYRHYMQKE IFEQPRAIADTLEGLQGIAPELFDGAPRHGQPGAAAWRVFKEIDSVLILACGTSYYSG CAAKYWLESIAAIPTQVEVASEYRYRTSVPNPRTLVVTISQSGETADTLAALRHAQGL GMRHTLTVCNVATSAMVRECQLAYVTRAGVEIGVASTKAFTTQLAGLFLLTLALAQAK GRLSEESEEQYLKAMRHLPAALQAVLALEPQVISWAEDFAKMENALFLGRGIHYPIAL EGALKLKEISYIHAEAYPAGELKHGPLALVTSSMPVVTVAPNDELLEKLKSNMQEVRA RGGVLYVLADARTNIESSEGVHVIRMPEHYGLLSPLLHVVPLQLLAYHTACARGTDVD KPRNLAKSVTVE" misc_feature 698005..699912 /locus_tag="Alide2_0675" /note="glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331" /db_xref="CDD:178980" misc_feature 698008..698700 /locus_tag="Alide2_0675" /note="Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate...; Region: GFAT; cd00714" /db_xref="CDD:48478" misc_feature order(698008..698010,698083..698085,698242..698247, 698251..698256,698281..698283,698356..698361, 698431..698436) /locus_tag="Alide2_0675" /note="glutaminase active site [active]" /db_xref="CDD:48478" misc_feature 698968..699294 /locus_tag="Alide2_0675" /note="SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008" /db_xref="CDD:88405" misc_feature order(698983..698988,699016..699021,699028..699033, 699052..699054,699058..699060,699070..699072, 699079..699081,699145..699147) /locus_tag="Alide2_0675" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88405" misc_feature order(698989..698994,699124..699132) /locus_tag="Alide2_0675" /note="active site" /db_xref="CDD:88405" misc_feature 699442..699906 /locus_tag="Alide2_0675" /note="SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009" /db_xref="CDD:88406" misc_feature order(699505..699507,699547..699549,699559..699561, 699565..699567,699571..699573,699577..699579, 699589..699591,699595..699603,699607..699618, 699667..699672,699682..699684,699688..699693, 699883..699888,699901..699903) /locus_tag="Alide2_0675" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88406" misc_feature order(699541..699543,699550..699552) /locus_tag="Alide2_0675" /note="active site" /db_xref="CDD:88406" gene complement(700592..701395) /locus_tag="Alide2_0676" /db_xref="GeneID:10481697" CDS complement(700592..701395) /locus_tag="Alide2_0676" /inference="protein motif:PFAM:PF01695" /note="KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="IstB domain-containing protein ATP-binding protein" /protein_id="YP_004386608.1" /db_xref="GI:330823305" /db_xref="GO:0005524" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481697" /translation="MRHDPAIASIVIMLRELKMHGMAQAVAELAEQGAPAFDAAQPIL SQLLKAETAEREVRSVAYQLKVARFPAYRDLAGFDFSHSEVNEALVRQLHRCEFLENA NNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEEEKAQGKPGQIAH RLAYADLVILDELGYLPFSTSGGALLFHLLSKLYERTSVVITTNLSFSEWANVFGDAK MTTALLDRLTHHCHILETGNDSYRFKNSSAQQPPQTTKKEKATKNLSTT" misc_feature complement(700664..701368) /locus_tag="Alide2_0676" /note="transposase/IS protein; Provisional; Region: PRK09183" /db_xref="CDD:181681" misc_feature complement(700697..701140) /locus_tag="Alide2_0676" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(701048..701071) /locus_tag="Alide2_0676" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(700784..700786,700883..700885, 701045..701068)) /locus_tag="Alide2_0676" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(700880..700897) /locus_tag="Alide2_0676" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(700718..700720) /locus_tag="Alide2_0676" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(701385..702911) /locus_tag="Alide2_0677" /db_xref="GeneID:10481698" CDS complement(701385..702911) /locus_tag="Alide2_0677" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004386609.1" /db_xref="GI:330823306" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10481698" /translation="MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLRVGEA EPHYAKRVSPSKLDPFALKLAGWLKTEAGRSRKQRRTVKQMYVDLQALGYGGSYNRVA AFARLWHEQRLVAQQTTGRGTFVPLAFGPGEAFQFDWSEDWAVLAGVRTKLQVAHFKL SHSRAFYLRAYPLQTHEMLFDAHNHAFAVLGGVPRRGIYDNMRTAVDRVRRGKERDVN ARFAAMVSHFLFEAEFCNPASGWEKGQVEKNVRDARHRLWQVVPPFPSLPDLNAWLEE RCVALWHEIEHGKLPGTVADIWTEEKNDLMPMPRPFDGFVEHTKRVSPTCLVHFERNR YSVPAPYANRPVSLRVYADRLVVAAEGQIVCEHQRLIERNHHGAGQTVYDWRHYLAVL QRKPGALRNGAPFLELPAAFKRLQAALLKQPGGDREMVEVLALVLHHDEQAVLAAVEL ALESGAASKTHILNVLHRLLDGKPAPAPVTSPQALKLSVEPQANVLRYDQLREVRYAS " misc_feature complement(702045..702890) /locus_tag="Alide2_0677" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584" /db_xref="CDD:34222" misc_feature complement(702141..702530) /locus_tag="Alide2_0677" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(702997..703221) /locus_tag="Alide2_0678" /db_xref="GeneID:10481699" CDS complement(702997..703221) /locus_tag="Alide2_0678" /inference="similar to AA sequence:KEGG:Ajs_2916" /note="KEGG: ajs:Ajs_2916 transposase IS66" /codon_start=1 /transl_table=11 /product="transposase IS66" /protein_id="YP_004386610.1" /db_xref="GI:330823307" /db_xref="GeneID:10481699" /translation="MVIDEQALSELDAEQLREVTQRLLAELRHQRALNEKLTYECALL KRLKFAAQSERHSADQKSLLEDEMLISTQK" gene complement(703304..703636) /locus_tag="Alide2_0679" /db_xref="GeneID:10481700" CDS complement(703304..703636) /locus_tag="Alide2_0679" /inference="protein motif:PFAM:PF05717" /note="PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like" /codon_start=1 /transl_table=11 /product="IS66 Orf2 family protein" /protein_id="YP_004386611.1" /db_xref="GI:330823308" /db_xref="InterPro:IPR008878" /db_xref="GeneID:10481700" /translation="MIRIDEAWLATTPLDMRAGTDTALARVIATFGAAHPHHAYVFAN QRANRLKVLVHDGVGLWLAARRLHQGKFVWAPAGSPNVALEHAQLNALVLGLPWQRVG SQGAISVV" misc_feature complement(703331..703630) /locus_tag="Alide2_0679" /note="putative Helix-turn-helix domain of transposase IS66; Region: HTH_Tnp_IS66; cl14891" /db_xref="CDD:196852" gene complement(703633..704061) /locus_tag="Alide2_0680" /db_xref="GeneID:10481701" CDS complement(703633..704061) /locus_tag="Alide2_0680" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004386612.1" /db_xref="GI:330823309" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10481701" /translation="MLKDPQTPRYAQRRTHRTYTPQFKAELVAACRQPGASVAAVALQ HGMNANVLHRWLKEWAQGFHRLEAGVSTAVVASPPPAFIPIDLSAVPPASAGELPSAS LPTPADGIRIECQRPGMSVTVHWPLSGAAECAQMLRELLR" misc_feature complement(703819..704025) /locus_tag="Alide2_0680" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene complement(704813..705067) /locus_tag="Alide2_0681" /db_xref="GeneID:10481702" CDS complement(704813..705067) /locus_tag="Alide2_0681" /inference="similar to AA sequence:KEGG:CtCNB1_4017" /note="KEGG: ctt:CtCNB1_4017 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386613.1" /db_xref="GI:330823310" /db_xref="GeneID:10481702" /translation="MKNAFTTATLSMCLALGATSVFAADSTSKDSMGKGQMGMEKSSM DKSASHKDAMGMSKGAMTKDGKSSMDQMGKGGMSKDKMSK" sig_peptide complement(704996..705067) /locus_tag="Alide2_0681" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 24" gene complement(705141..705929) /locus_tag="Alide2_0682" /db_xref="GeneID:10481703" CDS complement(705141..705929) /locus_tag="Alide2_0682" /inference="protein motif:PFAM:PF00174" /note="PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: ctt:CtCNB1_4018 oxidoreductase, molybdopterin binding protein" /codon_start=1 /transl_table=11 /product="oxidoreductase molybdopterin binding protein" /protein_id="YP_004386614.1" /db_xref="GI:330823311" /db_xref="GO:0009055" /db_xref="InterPro:IPR000572" /db_xref="GeneID:10481703" /translation="MSPPTSIWHRDNAEAVVADARKLLARQLPQASRRQFLTRGLTLG GLGLLSGCSIDDNATAEAALMRISRFNDRVQGWLFDPSHLAPTYLDSMITRPFPFNAF YGEGEVPQVDGDGFQLEVTGLVADKRRWRLHELRALPQYTQVTRHICVEGWSAIGKWG GPRFGDFLRAVGADLGARYVGFECADGYYTSIDMATALHPQTLLALDWDGQPLPPKYG FPMKLRMPTKLGYKNPKHIRAIFVSNTFNRGYWEDQGYNWFGGS" misc_feature complement(705150..705680) /locus_tag="Alide2_0682" /note="Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199" /db_xref="CDD:185822" misc_feature complement(order(705222..705227,705231..705233, 705240..705242,705264..705266,705279..705281, 705366..705368,705483..705485,705615..705617, 705621..705623,705627..705629)) /locus_tag="Alide2_0682" /note="Moco binding site; other site" /db_xref="CDD:29401" misc_feature complement(705483..705485) /locus_tag="Alide2_0682" /note="metal coordination site [ion binding]; other site" /db_xref="CDD:29401" gene complement(705926..706582) /locus_tag="Alide2_0683" /db_xref="GeneID:10481704" CDS complement(705926..706582) /locus_tag="Alide2_0683" /inference="similar to AA sequence:KEGG:CtCNB1_4019" /note="KEGG: ctt:CtCNB1_4019 putative transmembrane hydrogenase cytochrome" /codon_start=1 /transl_table=11 /product="putative transmembrane hydrogenase cytochrome" /protein_id="YP_004386615.1" /db_xref="GI:330823312" /db_xref="GeneID:10481704" /translation="MSSPTPQPSKHSKPLQPLWLRVTHWLNAVAVLVMVTSGWRIYNA SPIFDFVFPAGITLGGWLGGALQWHFAGMWLFVLNGLAYLLLNLATGRFARRLLPVTA RGILRDAWLALTARLSHGDMGRYNQVQRAAYLFAIADLVVLVLSGLVVWKSVQFPLLR ELLGGYDTARHIHFYGMAAIVGFASVHLVMVVLVPRSLLAMLLGRSTLRRTTAKEATP " misc_feature complement(705956..706540) /locus_tag="Alide2_0683" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene 706678..707388 /locus_tag="Alide2_0684" /db_xref="GeneID:10481705" CDS 706678..707388 /locus_tag="Alide2_0684" /inference="protein motif:PFAM:PF00072" /note="KEGG: pol:Bpro_0543 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal" /codon_start=1 /transl_table=11 /product="winged helix family two component transcriptional regulator" /protein_id="YP_004386616.1" /db_xref="GI:330823313" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10481705" /translation="MDTPKRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAV ERGGWHALVLDLMLPGVDGLEICRRARAMTYYVPIIITSARSSEVHRILGLELGADDY LAKPFSVMELVARVRALLRRSEALARNAKLEAGVLSLGGLSIDPIAREARVDGQSVEL TPREFDLLYFFARQPGKVFSRLDLLNQVWGYRHDGYEHTVNTHINRLRIKIERNPADP KRILTVWGRGYKLAEDAL" misc_feature 706690..707382 /locus_tag="Alide2_0684" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 706699..707001 /locus_tag="Alide2_0684" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(706708..706713,706840..706842,706864..706866, 706924..706926,706981..706983,706990..706995) /locus_tag="Alide2_0684" /note="active site" /db_xref="CDD:29071" misc_feature 706840..706842 /locus_tag="Alide2_0684" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(706849..706854,706858..706866) /locus_tag="Alide2_0684" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 706990..706998 /locus_tag="Alide2_0684" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 707086..707370 /locus_tag="Alide2_0684" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(707158..707160,707215..707220,707272..707274, 707281..707283,707305..707310,707344..707346, 707359..707361) /locus_tag="Alide2_0684" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 707385..708866 /locus_tag="Alide2_0685" /db_xref="GeneID:10481706" CDS 707385..708866 /locus_tag="Alide2_0685" /inference="protein motif:PFAM:PF02518" /note="KEGG: vap:Vapar_2987 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_004386617.1" /db_xref="GI:330823314" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="GeneID:10481706" /translation="MTVQSLSLSQRLSAVFVLLLLACCAASVVLQMRGSERHEQEVIQ RLSLDLAPQIARYPELMEPRGFNPSAVSGLFDKLMAVNPSVEVYLLDAGGRIQSYSAP EGAVKRLQVDLAPVRRLLGGGALPIFGDDPRSPDGRKVFSAAPLKAAGRDAGYVYVIL QGESRESLAARVNAGSAANAILWSMTLVALLGLMAGLAAFRLITRPLRTLTEAVRGLE THGMSWLPQARPLLKQAARSGGEIALLGQSFERLAQRTQEQWQALRNQDQQRRELFAN LSHDLRTPLTSLHGYLETLRMKSEVLEPQEQRRYLDIALEQSRKVGRLAQEMFELARL EYGVVKPEMEQFFLADLLQDVFQKFELAAEAKHQRLVADIAPGLPPITADLAMMERVL MNLIDNAVRVAPEGGEITVELQPHAQGGIEVTVRDTGPGISAALQEHLFERPAFTGYA AAQGARSGGFGLMIVHRILQLHESTIRLMSQPGAGAVFRFVLR" misc_feature <707772..708860 /locus_tag="Alide2_0685" /note="sensory histidine kinase CreC; Provisional; Region: PRK11100" /db_xref="CDD:182962" misc_feature 708183..708383 /locus_tag="Alide2_0685" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(708201..708203,708213..708215,708225..708227, 708234..708236,708246..708248,708255..708257, 708312..708314,708324..708326,708333..708335, 708345..708347,708354..708356,708366..708368) /locus_tag="Alide2_0685" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 708219..708221 /locus_tag="Alide2_0685" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 708546..708860 /locus_tag="Alide2_0685" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(708564..708566,708576..708578,708585..708587, 708657..708659,708663..708665,708669..708671, 708675..708680,708759..708770,708816..708818, 708822..708824,708837..708842,708846..708848) /locus_tag="Alide2_0685" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 708576..708578 /locus_tag="Alide2_0685" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(708669..708671,708675..708677,708759..708761, 708765..708767) /locus_tag="Alide2_0685" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(708884..709231) /locus_tag="Alide2_0686" /db_xref="GeneID:10481707" CDS complement(708884..709231) /locus_tag="Alide2_0686" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386618.1" /db_xref="GI:330823315" /db_xref="GeneID:10481707" /translation="MHPTLKSLALVTSTLAMAAPSVTHAAQNGCTVKARSDSVVLMHC KENLSETAWVEAAKAACEPGKACNVWIWEDPGKMPLVAPKTDAELPKSATGAAVAVWA NDTASLIKLKKVR" sig_peptide complement(709154..709231) /locus_tag="Alide2_0686" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 26" gene complement(709407..710213) /locus_tag="Alide2_0687" /db_xref="GeneID:10481708" CDS complement(709407..710213) /locus_tag="Alide2_0687" /inference="protein motif:TFAM:TIGR02595" /note="TIGRFAM: PEP-CTERM anchor; PFAM: von Willebrand factor, type A; PEP-CTERM bacterial; KEGG: cja:CJA_0975 von Willebrand factor type A domain protein; SMART: von Willebrand factor, type A" /codon_start=1 /transl_table=11 /product="PEP motif putative anchor domain-containing protein" /protein_id="YP_004386619.1" /db_xref="GI:330823316" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR011449" /db_xref="InterPro:IPR013424" /db_xref="GeneID:10481708" /translation="MLTLSKFLRHIGSALALATASLATYAAPVTTQLGFLVDASGSIG SSNFQTMRNGYAAALAALPTDGSIEVTVVTFSSGTTTVVSPTVVTAASLPGIIAAVNS MAYSAGLTATAAGIAAISSLMTGSSNFSTGLNSMINIATDGEPNIPGNNPNQAAINAA IAARAAGIDALTAEAIGSFDVSALRSLVFSPVNGPCNNCGTFLPDGSSPPNPMTSNPW VLAVNSFNDFPTAIHNKVQASTGQVPEPGILMLMALGLVGLGITRRSRSA" sig_peptide complement(710133..710213) /locus_tag="Alide2_0687" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 27" gene 710624..712066 /locus_tag="Alide2_0688" /db_xref="GeneID:10481709" CDS 710624..712066 /locus_tag="Alide2_0688" /EC_number="2.7.7.13" /inference="protein motif:TFAM:TIGR01479" /note="TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: rfr:Rfer_0711 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase" /codon_start=1 /transl_table=11 /product="mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase" /protein_id="YP_004386620.1" /db_xref="GI:330823317" /db_xref="GO:0016779" /db_xref="InterPro:IPR001538" /db_xref="InterPro:IPR005835" /db_xref="InterPro:IPR006375" /db_xref="GeneID:10481709" /translation="MLIQPVVLSGGSGTRLWPLSREKYPKQLLALMGEDSLLQATLRR FNGVSGADSAPPLVVCNDEYRFVVAEQLRLIGRLGRIVLEPVGRNTAPALTLAALAAQ SGGEDPVLLIMPADHVVTQLAAFQEGVRHAARLAQDGAIVTFGITPDRPETGYGYIQA GAAVDEDGARAIARFVEKPDRATAEGYLQAGDYLWNSGLFVLRASVWLKALALCRPDI LEACEAAWKGGASDLSFWRVNAEAFAACPSDSIDYAVMERLAGAQSVAGLPRGVVLPL SAGWSDVGAWDALWQILPKDADGNVVQGRTLMQDSSNTLALSSGRLLACVGVQGLVVV ETPDAVLVADQRHTQDVKKIVDRLKRDGGTEGVLHRKVYRPWGWYDGVDGGERFQVKR IMVKPGGKLSLQMHHHRAEHWVVVRGTARVTKGEEVFLLTENQSTYIPLGVTHRLENP GHVDLEMIEVQSGSYLGEDDIVRFEDYYGR" misc_feature 710630..712063 /locus_tag="Alide2_0688" /note="mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Region: GMP_PMI; TIGR01479" /db_xref="CDD:162382" misc_feature 710630..711490 /locus_tag="Alide2_0688" /note="GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase; cd02509" /db_xref="CDD:133003" misc_feature order(710645..710647,710651..710653,710969..710971) /locus_tag="Alide2_0688" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133003" misc_feature 711599..712051 /locus_tag="Alide2_0688" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 712290..712931 /locus_tag="Alide2_0689" /db_xref="GeneID:10481710" CDS 712290..712931 /locus_tag="Alide2_0689" /inference="protein motif:TFAM:TIGR03027" /note="KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: PEP-CTERM, putative polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain" /codon_start=1 /transl_table=11 /product="polysaccharide export protein" /protein_id="YP_004386621.1" /db_xref="GI:330823318" /db_xref="InterPro:IPR003715" /db_xref="InterPro:IPR017477" /db_xref="InterPro:IPR019554" /db_xref="GeneID:10481710" /translation="MHKNVSRLLGSMVRVLAMAGVAVAMVGCGAMRGGDYPAAPAQAA TPDYNYVVGPGDTLNIIVWRNPELSQVVPVRPDGQVSTPLIDGLVAQGKTSAQIARDV EKELGKYVRDPVVTVIVTNFVGPYSEQIRVVGEAAKPQFLPYKQKMTVLDVMIAAGGL TDFADGNRATLVRSAEGNKRYKVRLDDLIKRGDIGANVDVLPGDILIIPQGWF" sig_peptide 712290..712364 /locus_tag="Alide2_0689" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.960) with cleavage site probability 0.596 at residue 25" misc_feature 712404..712652 /locus_tag="Alide2_0689" /note="Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563" /db_xref="CDD:145609" misc_feature 712437..712928 /locus_tag="Alide2_0689" /note="putative polysaccharide export protein, PEP-CTERM sytem-associated; Region: pepcterm_export; TIGR03027" /db_xref="CDD:132072" misc_feature 712677..>712781 /locus_tag="Alide2_0689" /note="SLBB domain; Region: SLBB; pfam10531" /db_xref="CDD:192616" gene 712978..714540 /locus_tag="Alide2_0690" /db_xref="GeneID:10481711" CDS 712978..714540 /locus_tag="Alide2_0690" /inference="protein motif:TFAM:TIGR03007" /note="manually curated; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; PFAM: Lipopolysaccharide biosynthesis" /codon_start=1 /transl_table=11 /product="polysaccharide chain length determinant protein" /protein_id="YP_004386622.1" /db_xref="GI:330823319" /db_xref="InterPro:IPR003856" /db_xref="InterPro:IPR014345" /db_xref="GeneID:10481711" /translation="MDELLGQITTAARGMWIYRRVAMLTTWLVGAIGVGVVLLMPDYY QASARVFVDTQSILRPLMTGIAVQPNIEQQVSMLSRTLINRPTVERLVRIADLDLGSQ SKASTDAVVDSVTKSISIQSTGRDNLYTLSYRNPSPEKAQRVVQALLTIFVESSLGAA RQDSDSARRFLDEQIKSYEAKLTEAEGRLKAFKLRNIEMQSQSGLDSAGRAAEIDNQL SQARLDLREAESARVAAGRQLEILRSQAAKSPVASAPDVQTPELDARIYAQKRNLDTL LQRYTDEHPDVVRTRFLIADLEAQKRREVEALRRKAQEGHAAPAVETNPAILELSRIY SAAEVQVASLRARVVEYESRSRRIHEQLKVAPQLEAELAQLNRDYQVNQKNYADLVAR RESALMSGKLENTSNVAEFRVIDPPRVAPKPVAPNRLLLMPISLLVAIGAGLGMAFVM SQVRPVFFDGATLRQVTQLPLLGVVGQIASDESRRRESRSLMRFIMACVAFLLLYAGG MAALSIHSGVLG" misc_feature 712996..714510 /locus_tag="Alide2_0690" /note="polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Region: pepcterm_ChnLen; TIGR03007" /db_xref="CDD:163099" misc_feature <713095..713421 /locus_tag="Alide2_0690" /note="Chain length determinant protein; Region: Wzz; cl01623" /db_xref="CDD:186458" misc_feature <714037..714402 /locus_tag="Alide2_0690" /note="Chain length determinant protein; Region: Wzz; cl01623" /db_xref="CDD:186458" gene 714549..715511 /locus_tag="Alide2_0691" /db_xref="GeneID:10481712" CDS 714549..715511 /locus_tag="Alide2_0691" /inference="similar to AA sequence:KEGG:CAP2UW1_1413" /note="manually curated; KEGG: app:CAP2UW1_1413 non-specific protein-tyrosine kinase" /codon_start=1 /transl_table=11 /product="non-specific protein-tyrosine kinase" /protein_id="YP_004386623.1" /db_xref="GI:330823320" /db_xref="GeneID:10481712" /translation="MTSSIEKAAQRLEQLRKAGVSLAGDKGRPTEAAVQESAYLPEHA AHFAGMDSVEAQAAAHSKPGTKTVQIDLTALGASGFVTPNAPRSVTTEQYRVIKRPLL ENATGKGASLVAHGNLIMVTSALPGEGKSFTAINLAMSLAMELDHTVMLVDADVTCPS VMTKLGLPPAAGLLDVLQDDKIKLSDVLLRTNVDKLTLLPAGLPHPRATELLASDAMT SLLDEMGKRYSDRIIIFDSPPLLLTTEARVLAGHMGQVVIVVQAEKTLQSQVEHALST IESCPIKLMVLNQVRSSGLGAYGYGYGYGHGRMVGERGPATAVA" misc_feature 714786..715412 /locus_tag="Alide2_0691" /note="exopolysaccharide/PEPCTERM locus tyrosine autokinase; Region: pepcterm_TyrKin; TIGR03018" /db_xref="CDD:132063" misc_feature 714903..>715016 /locus_tag="Alide2_0691" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene 715540..717195 /locus_tag="Alide2_0692" /db_xref="GeneID:10481713" CDS 715540..717195 /locus_tag="Alide2_0692" /inference="protein motif:TFAM:TIGR03016" /note="TIGRFAM: Conserved hypothetical protein CHP03016, PEP-CTERM; KEGG: rfr:Rfer_0661 hypothetical protein" /codon_start=1 /transl_table=11 /product="PEP-CTERM system associated protein" /protein_id="YP_004386624.1" /db_xref="GI:330823321" /db_xref="InterPro:IPR017467" /db_xref="GeneID:10481713" /translation="MHLQYCRIASTHVAGRAVWALAAASALSPGIALAQVPDVSTAEP PGFAPVQSPVVPTEPTDAIVKRRDNAPADSRQSGVWLEPRITVQHTVTNNARLDATHI SDQVTEVNPGFRLVSDTARINGFVDYSLRTAHYARGTVSDQVWHNLNAKGTAEAIENR VFVDVAGVVALQPISAFGAPGVDSPANPNMAQTSSFRVSPYLKGSFGSNVDYEARYSV QDTRSDAENRASVTVQGWLLHLGSKPDGHTIIGWALDAMQEDAEFSTGRNIDTTTLRA RMSYLASPQLLLVGIGGVESTNQLSPTHKSHGIVGFGADWRPSNKTRLFLERESRYFG EAHKVNFEYRTSRTIWSYTDRKGIFAGLGAQSSASMGSLFDLLDSFYARTEPNAIRRT QLVLAEIERRGLPADMQVFPDFLTSSSTLQRLQELSVALLGQRSTFTLAVLRSDTRLL DGTLQLGDDFDANTRIRQRGWRLMVGHRLTPNASINASLGEMHSVGSVPGLETRVRPL ILGWNTLVARRTNVGIQLRRVLSDGSVTRYNESAIMGFITHRF" sig_peptide 715540..715644 /locus_tag="Alide2_0692" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.761) with cleavage site probability 0.761 at residue 35" misc_feature 715780..717192 /locus_tag="Alide2_0692" /note="Uncharacterized protein conserved in bacteria (DUF2320); Region: DUF2320; cl12051" /db_xref="CDD:164323" gene 717199..718299 /locus_tag="Alide2_0693" /db_xref="GeneID:10481714" CDS 717199..718299 /locus_tag="Alide2_0693" /inference="protein motif:TFAM:TIGR03015" /note="KEGG: rfr:Rfer_0662 ATPase; TIGRFAM: ATPase, secretion system, PEP-CTERM, predicted; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="secretion ATPase" /protein_id="YP_004386625.1" /db_xref="GI:330823322" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017466" /db_xref="GeneID:10481714" /translation="MYEAFYGLTSKPFQLNPDPGFYFSSKQHQRARAYLEYGVMCCEG FIVITGEVGAGKTTIVRGLLDSLDPDTVVAAHLVSTQLGADDTLRLVGAAFGVRVHGV PKGDLLLALEAFFVAQTLKGKRCLLIVDEAQNLQPQAVEELRMLSNFQNGQDALLQTF LVGQPEFREILQSPGMLQLRQRVIATCHLGPLDSEETREYILHRLKCAGASDKPTFDS EIFEGIYRFTAGIPRRINTLMDRVLLQGFLTDKIHIDLELLNEIIHEIQSEMNVPPKV AHPWESPLRTATRGALPYDDSELADLSLDDELASGLSSNLANITAEQLSAHLLRIERS VLRQERVNLEILMNLQKLVAAARRSHPDSAAG" misc_feature 717199..718005 /locus_tag="Alide2_0693" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 717199..717981 /locus_tag="Alide2_0693" /note="Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]; Region: ExeA; COG3267" /db_xref="CDD:33078" gene 718308..719174 /locus_tag="Alide2_0694" /db_xref="GeneID:10481715" CDS 718308..719174 /locus_tag="Alide2_0694" /inference="protein motif:TFAM:TIGR03006" /note="KEGG: app:CAP2UW1_1417 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: Polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deactylase family protein" /protein_id="YP_004386626.1" /db_xref="GI:330823323" /db_xref="InterPro:IPR002509" /db_xref="InterPro:IPR014344" /db_xref="GeneID:10481715" /translation="MHDPGPITNALTIDVEDYFQVSAFAPYIKRSEWDSRECRVERNV DRILALLDDRGVRATFFTLGWIAERYPAMVRRIVDGGHELASHGYGHERASDLSEADF FNDVHRAKALLEDIGGMLVLGYRAPSFSIGSANMWALDTLLRAGYRYSSSIYPIRHDH YGMPDAPRFSHQIRQGLIEIPPTTLRIFNHNLPSSGGGYFRLLPYSLSHWMLRHVNTQ DHSPAVFYFHPWEIDVRQPRIQGISLRTRFRHYVNIGRMEKRLGLLLQDFCWGRMDHV FLPRHAPEVSLV" misc_feature 718332..719141 /locus_tag="Alide2_0694" /note="polysaccharide deactylase family protein, PEP-CTERM locus subfamily; Region: pepcterm_polyde; TIGR03006" /db_xref="CDD:188268" misc_feature 718434..718754 /locus_tag="Alide2_0694" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" misc_feature 718758..719141 /locus_tag="Alide2_0694" /note="Domain of unknown function (DUF3473); Region: DUF3473; pfam11959" /db_xref="CDD:152394" gene 719182..720228 /locus_tag="Alide2_0695" /db_xref="GeneID:10481716" CDS 719182..720228 /locus_tag="Alide2_0695" /inference="protein motif:TFAM:TIGR03019" /note="KEGG: rfr:Rfer_0665 hypothetical protein; manually curated; TIGRFAM: PEP-CTERM system-associated, FemAB-related" /codon_start=1 /transl_table=11 /product="FemAB-like protein" /protein_id="YP_004386627.1" /db_xref="GI:330823324" /db_xref="InterPro:IPR017469" /db_xref="GeneID:10481716" /translation="MELTIHRLDPNNASDTVRWDDFVRGCAQATFFHRSGWQALIREV FRHDTYFLFAESGAGGGIRGVLPLGHVKSRLFGNALVSLPFSVYGGVAALDEQAASAL EREAECLAERLGVDHLELRNVQRRHADWPLQDLYVTFRKPIEPKEEANLLAIPRKQRA MVRKGIKNGLTSHIDTSVDRFFALYADNVRRHGTPALPKAYFKALLRIFGPDCEVLTV CSPDGHPISSVLSFYFRDEVLPYYAGDASAARELAANDFKYWELMRRACARGLKVFDY GRSKQNTGSYAFKKNWGFEPTPLHYEYRLYKSDSVPQNNPSNAKYRLLIAAWRRMPIQ LTNWLGPKIVRNLG" misc_feature 719233..720225 /locus_tag="Alide2_0695" /note="FemAB family; Region: FemAB; cl11444" /db_xref="CDD:196237" gene 720242..721480 /locus_tag="Alide2_0696" /db_xref="GeneID:10481717" CDS 720242..721480 /locus_tag="Alide2_0696" /inference="protein motif:TFAM:TIGR03087" /note="KEGG: dar:Daro_2405 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp1; PFAM: Glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="sugar transferase" /protein_id="YP_004386628.1" /db_xref="GI:330823325" /db_xref="InterPro:IPR001296" /db_xref="InterPro:IPR017521" /db_xref="GeneID:10481717" /translation="MAAASNILYLVHRLPYPPNKGDKVRSYHLLRHLQKSHRVFLGTF VDDPDDLQHLPTLRAMCSDLHVERIHVRSAKIKSLSGILTGEALTLAFYRSAGMRQWV KQTAAAHDLRACVVFSSAMAQYAQMLLPQVPMLVDFVDVDSAKWTQYAPAHRWPLSML YRREGRHLLAYERAMAALAQRAYFVTTNETSLFLSQAPECAGRVQSMGNGVDSDFFAP HPRRESPFAAGEQAIVFTGAMDYWPNIDGVSWFVSDMLPHLVARYPQVRFYIVGRSPS PQVQALASPHVVVTGTVPDVRPYLQHANAVVAPLRVARGIQNKILEAMAMQQPVVTVT SCADAIGATAEQGVLRADASEEFVQVLQSLLESPTSVAELGRKARSYVEHACSWQAHL GTIDSCLGNAGAAHAGGAGA" misc_feature 720260..721438 /locus_tag="Alide2_0696" /note="sugar transferase, PEP-CTERM/EpsH1 system associated; Region: stp1; TIGR03087" /db_xref="CDD:163131" misc_feature <720722..721414 /locus_tag="Alide2_0696" /note="Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013" /db_xref="CDD:186885" gene 721458..723059 /locus_tag="Alide2_0697" /db_xref="GeneID:10481718" CDS 721458..723059 /locus_tag="Alide2_0697" /inference="protein motif:TFAM:TIGR03109" /note="KEGG: rfr:Rfer_0666 hypothetical protein; TIGRFAM: Exosortase 1; Exosortase, EpsH; Methanolan biosynthesis EpsI; PFAM: Exosortase EpsH-related" /codon_start=1 /transl_table=11 /product="exosortase 1" /protein_id="YP_004386629.1" /db_xref="GI:330823326" /db_xref="InterPro:IPR013426" /db_xref="InterPro:IPR014263" /db_xref="InterPro:IPR017540" /db_xref="InterPro:IPR019127" /db_xref="GeneID:10481718" /translation="MPVVPEHEDARMTGSIRSIPAHWRRPLAALVLLQAAILAIYWHS AWGMAMIWARSDTYAHGFVVPFIALWLVWRQRAALAPMVPRPGRLAWLLMAGAAALWL VGDLVSVNAATQLALMMLIVLSVPAVLGWRITRALAFPLGFLFFAVPIGDFLMPRLME WTADFTVLALRVSGIPVYREGLQFIIPSGTWSVVEACSGIRYLIASVTVGCLFAYLSY HSMRKRMVFIGVAIVVPLVANWLRAYLIVMLGHFSGNTIATGVDHLIYGWLFFGLVIG IMFLIGARWVDPMPPLKASVPGSLVEASYLNRWPWFALSLPFVVVLAPYAVLAIMNLG TKTAPVQLARPIVAAPWHATAMPPSSWEPAFQNASAELHMGLADAQGRPLGLLVSYYR QQNYKRKLVSSENVLVRSLDPVWARVASGSANVQMQGRALRVDSAVIRQHARGMVGAG ERLLAWRFYWVHGTFTASDYAGKIRGALGRISGWGDDGANIVIYTPLSDAKEAEADAS ALLQSYLDSQGSALAQALRQTRGRD" misc_feature 721524..722318 /locus_tag="Alide2_0697" /note="eight transmembrane protein EpsH (proposed exosortase); Region: 8TM_EpsH; cl10495" /db_xref="CDD:195975" misc_feature 721590..722318 /locus_tag="Alide2_0697" /note="Transmembrane exosortase (Exosortase_EpsH); Region: Exosortase_EpsH; pfam09721" /db_xref="CDD:192346" misc_feature 722490..722945 /locus_tag="Alide2_0697" /note="Protein of unknown function (DUF3485); Region: DUF3485; cl11827" /db_xref="CDD:164274" gene 723062..724972 /locus_tag="Alide2_0698" /db_xref="GeneID:10481719" CDS 723062..724972 /locus_tag="Alide2_0698" /EC_number="6.3.5.4" /inference="protein motif:TFAM:TIGR03108" /note="TIGRFAM: Exosortase 1 system-associated amidotransferase 1; Asparagine synthase, glutamine-hydrolyzing; KEGG: rfr:Rfer_0669 asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II" /codon_start=1 /transl_table=11 /product="exosortase 1 system-associated amidotransferase 1" /protein_id="YP_004386630.1" /db_xref="GI:330823327" /db_xref="GO:0004066" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR001962" /db_xref="InterPro:IPR006426" /db_xref="InterPro:IPR017539" /db_xref="GeneID:10481719" /translation="MCGISGIFDTRGTGTIPRDLISRINNVQSHRGPDENEVHLEPGL ALGHRRLSVIDLATGTQPLFNEDGTVGIVFNGEIYNYLELMQELNDLGYRFRTRSDTE VIVHAWQAWGEACVHRLRGMFAFALWDRKHQTLFLARDRMGVKPMHYAWLPDGSFIFG SELKVLTAHPGFVRDIDPLAVEGYFSFGYVPDPRCIYQNAHKLPAAHTLTLRRGDAGR PAPRPYWDVRFTNDNPIKLQDAQAELRERVRESVRLRMIADVPLGAFLSGGVDSSAVV ATMAGLSSTPVHTCSIGFDDPRFDESSFAQQVADHYRTDHRLDIVSSDDFDLIDTLAW LYDEPFADSSAIPTYRVCQMARKHVTVALSGDGGDESMGGYRRYRMHLGEEAVRGRLP LALRRGMFGPLGRWYPKADWAPRSLRAKTTFQALAMDSVQAYCHSMSQLRGDERRALF SPAFQRSLGGYGALEVFRLHAEQAQTEDPLALIQYLDYKTWLVGDINTKVDRASMAHS LEVREPLMDHLLVEWLATLPSDFKIRAGQGKVIFKQAYEPLLPRDVLYRPKMGFSVPL AAWLRGPLKDRVRLALLGERMRDCGYFNPVTLRRLVDEHNSGLRDHATALWMLLMFEA FLRLNEGAAPHG" misc_feature 723062..724945 /locus_tag="Alide2_0698" /note="exosortase 1 system-associated amidotransferase 1; Region: eps_aminotran_1; TIGR03108" /db_xref="CDD:132152" misc_feature 723065..723694 /locus_tag="Alide2_0698" /note="Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a...; Region: AsnB; cd00712" /db_xref="CDD:48476" misc_feature order(723065..723067,723209..723211,723284..723292, 723359..723361) /locus_tag="Alide2_0698" /note="active site" /db_xref="CDD:48476" misc_feature order(723113..723115,723137..723139,723146..723148, 723155..723169,723206..723208) /locus_tag="Alide2_0698" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48476" misc_feature 723827..724756 /locus_tag="Alide2_0698" /note="The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes...; Region: Asn_Synthase_B_C; cd01991" /db_xref="CDD:30178" misc_feature order(723854..723862,723935..723943,724112..724114, 724151..724159) /locus_tag="Alide2_0698" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30178" misc_feature order(723854..723862,723935..723943,724112..724114, 724151..724159) /locus_tag="Alide2_0698" /note="Molecular Tunnel; other site" /db_xref="CDD:30178" gene 724965..726119 /locus_tag="Alide2_0699" /db_xref="GeneID:10481720" CDS 724965..726119 /locus_tag="Alide2_0699" /inference="protein motif:TFAM:TIGR03088" /note="KEGG: rfr:Rfer_0668 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp2; PFAM: Glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="sugar transferase" /protein_id="YP_004386631.1" /db_xref="GI:330823328" /db_xref="InterPro:IPR001296" /db_xref="InterPro:IPR017522" /db_xref="GeneID:10481720" /translation="MAEADRVRVVHVVHSFGVGGLENVIVQLINRLPPARFEHVVLAL TTVSEFRQRIARPDVRFIALHKPPGHAVPLYPRLYRLLRELRPHVLHTCNLAALEVVP LAWLARVPLRVHAEHGWDAHDPQGRNPRYQRLRRLYRPFVNHYVAVSRDLDDYLGRAV GVPARRRHLIANGVDTDAFAPAHGMPRAVSGCPFEPGRHWLVGTVGRLQTVKNQPLLA RAFVRALQDNPAMRDTARLVIVGEGPLRTEVERVLAEAGMSDLAWLPGARADVADVLR SFDLFVLPSQTEGTSCTLQEAMASGLPVVATAVGGTPDLVQEGVTGHLVPSDDEQALA DAMARAFSDPGAAVRQGQAGREHALRRFAMGTMVRQYQQLFDPQVGRATV" misc_feature 725007..726092 /locus_tag="Alide2_0699" /note="This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis; Region: GT1_WbnK_like; cd03807" /db_xref="CDD:99979" misc_feature 725010..726092 /locus_tag="Alide2_0699" /note="sugar transferase, PEP-CTERM/EpsH1 system associated; Region: stp2; TIGR03088" /db_xref="CDD:132132" misc_feature order(725022..725024,725577..725585,725775..725777, 725841..725843) /locus_tag="Alide2_0699" /note="putative ADP-binding pocket [chemical binding]; other site" /db_xref="CDD:99979" gene 726121..727275 /locus_tag="Alide2_0700" /db_xref="GeneID:10481721" CDS 726121..727275 /locus_tag="Alide2_0700" /inference="protein motif:PFAM:PF00534" /note="PFAM: Glycosyl transferase, group 1; KEGG: rru:Rru_A3107 glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="group 1 glycosyl transferase" /protein_id="YP_004386632.1" /db_xref="GI:330823329" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10481721" /translation="MRILYHHRTASKDGQAVHIEEMIDAMRALGHEVRVVAPLADQDD GRMGGGVGWVHHLKAVLPKAMYEFMELAYSLVAYRKLMATAREFKPDLIYERYNLFLL AGLMVKRRLDVPLLLEVNAPLVFERSQHSGGLALRTLARWAEGKAWRGADAVLPVTAV LAAHVRDYGVPAERIHVIPNGINRAHFAHAPSPAEAKASLGLQGRVVLGFTGFVRDWH GVDRIIDWMAGTDAPTDTHLLVVGDGPVRTELQAQACRLGLGERVTFTGVIHRDQVPA YVAAFDVALQPAVTPYASPLKLMEYLVLGKAVIAPATPNLQEVLADGLNALLFDEAQP GALEHVLQRVCSDSVLRGRLAQGAADTIDRLELTWLGNARRALSLVQARG" misc_feature 726121..727266 /locus_tag="Alide2_0700" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature 726127..727263 /locus_tag="Alide2_0700" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" gene 727275..728456 /locus_tag="Alide2_0701" /db_xref="GeneID:10481722" CDS 727275..728456 /locus_tag="Alide2_0701" /inference="protein motif:PFAM:PF00534" /note="PFAM: Glycosyl transferase, group 1; KEGG: hse:Hsero_2751 glycosyltransferase 1 protein" /codon_start=1 /transl_table=11 /product="group 1 glycosyl transferase" /protein_id="YP_004386633.1" /db_xref="GI:330823330" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10481722" /translation="MKILLFSSLYPSAVRPIHGIFVETRLRELLKTGEVQAKVVAPVP WFPFKGKRFGAYARFAATPHMEQRNGVEVHHPRYLLLPKVGMNLAPYAMALGALPAIR RLQRRGFDFDLIDAHYYYPDGVAAALLAKWLNKPFVVTARGSDLNLIAQYSFPRKLIL QAAEQASASIGVSQALMDRLAELGADRSKLNILRNGVDLERFVPEDRAEARQRLGLPV PGRYLLSVGNLVELKGHHIAIEALSHLPEVTLLIAGAGPEEGSLKVLAERMGVAERVC WAGVVPQAELKWWYSAADALALCSSREGWANVLLEAMACGTPVVATDICGTPEVVSRP AAGVLMARRDARALVTAWLDLHSQLPTREETRAYAQTFSWDATTQGQLQLFRRIADAR R" misc_feature 727281..728438 /locus_tag="Alide2_0701" /note="This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (; Region: GT1_wlbH_like; cd03798" /db_xref="CDD:99971" misc_feature 727401..728450 /locus_tag="Alide2_0701" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" gene 728443..730065 /locus_tag="Alide2_0702" /db_xref="GeneID:10481723" CDS 728443..730065 /locus_tag="Alide2_0702" /inference="similar to AA sequence:KEGG:Tmz1t_3254" /note="KEGG: tmz:Tmz1t_3254 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxy-L-arabinose transferase-like protein" /protein_id="YP_004386634.1" /db_xref="GI:330823331" /db_xref="GeneID:10481723" /translation="MPGADWRPIDRQERLLAWALVLACVVLLFVQAPHGGAFYWSDSP RHALNGVFVMDLVKAMPLDDPTGYAYRYYAQYPALTILLYPPLFYAISAPFYAVFGVS QETALLVVALHYVALGLGCWRLARYWLPAVPSLAFAALVLWLPEVAFWGRQVMLEVPA FAFLAWSAVAVMAYLSGGHVKWLYLGVALLVLGMYTKISVGYMGVVYAILVLQRDGWA AMRNRHHWWVAVLAIVGLLPLAVLTLKFGQANVQSVAGVADAVASRASWRGWVWYLQQ IPSQVGWPLTVLGLAGAAMAAWRRTPGLGFWWAGFALGYLFFSSIDLKEARHSVFLLP TVVFFAVLLLYTLLPPPRLGRWSVAALALLVLATAGLTAWTRPVFYVQGYAQAAAEVA RLAPHDSTVLFSGYRDGSFVFNMRAREDRRDLHVMRADKLLLGVAVRRELGVEQKGLT EAEIADAINANGVHYVVMQPGFWTDLEAMQRFERVMASGQFEQVARIATPANYPAHET QLVVYRNKGQVAPRRSGTDIELKIINRRISAD" misc_feature 728692..>729405 /locus_tag="Alide2_0702" /note="4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807" /db_xref="CDD:31992" gene 730090..730221 /locus_tag="Alide2_0703" /db_xref="GeneID:10481724" CDS 730090..730221 /locus_tag="Alide2_0703" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386635.1" /db_xref="GI:330823332" /db_xref="GeneID:10481724" /translation="MEALILVIDMGLMLYLCWRLFRGRDGREVDLGYLRYDKTDTSR" gene 730256..731587 /locus_tag="Alide2_0704" /db_xref="GeneID:10481725" CDS 730256..731587 /locus_tag="Alide2_0704" /inference="protein motif:TFAM:TIGR03097" /note="TIGRFAM: Conserved hypothetical protein CHP03097, O-antigen ligase-related; KEGG: hse:Hsero_2764 O-antigen polymerase" /codon_start=1 /transl_table=11 /product="wzy family polymerase" /protein_id="YP_004386636.1" /db_xref="GI:330823333" /db_xref="InterPro:IPR017528" /db_xref="GeneID:10481725" /translation="MRDLAFALMLLAALPLALARPFNAYLLWGWTGMLAPTTYFYGFM VGARVNFVFAMLTLVLLVFGRVSWRNYQGNVVAWLYLLLAIHATFAFWFAYAGNPYDE QYYEILLKGLLFAVVMPFFVRERVHFHAVLIVIALGLGIHGVLNGLKTIASGGGHLML GPEGTMLADRNHLSTALALVLPVLLYLQTYATNRLVRLGYLGAFCVVVLAILGGGSRA GFVAVSVVGMWLIFTTRRKGLAVVLVVAAVVGFLAFAPEDITERMSTITEAEDDNSFM GRVFAWRVSSAIALANPIFGGGFHAVQVQSIWDNFKASSGLLGFLHLPVPEFSAKAAH SIYFEVMGDLGFVGLGLFLFILARALWCRRVIKRATARLGSPYQWARDMADMLMLAVL AYMVGGAAVSLGYFEVIYMVVMLMELLRIHVVRALADPMRREMASGAGGKA" sig_peptide 730256..730315 /locus_tag="Alide2_0704" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.961) with cleavage site probability 0.944 at residue 20" misc_feature 730313..731512 /locus_tag="Alide2_0704" /note="O-Antigen ligase; Region: Wzy_C; cl04850" /db_xref="CDD:194980" gene 731584..732546 /locus_tag="Alide2_0705" /db_xref="GeneID:10481726" CDS 731584..732546 /locus_tag="Alide2_0705" /inference="protein motif:PFAM:PF01522" /note="PFAM: Polysaccharide deacetylase; KEGG: neu:NE0847 hypothetical protein" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_004386637.1" /db_xref="GI:330823334" /db_xref="GO:0004066" /db_xref="InterPro:IPR002509" /db_xref="GeneID:10481726" /translation="MISRLVLQSLSKDKLSVLLFHKVPQQCDPLVPADVNMARFEHLL DYTFSQLQVLPLEEAVGRLQTGRLPRRAACITFDDGYPDWLAGVAPALRRRNLHATFF ITSGQFDGVPLWHERILAALRRLPGPWLDLGIPFLPAQPVVTMDDRRRQVQRLEQELK YLTLHRREQILQQLEAAAGVQAADVPVMSENQLRDLHSQGFGIGAHTALHPILDYCNA EEAEREIGGAREHLQAIVGGPVNGFAYPNGRPYADFSRLHVDAVRHAGYRYAVTTHWG VADACTSPFQIPRFTPWAERDWHVTYQLVRNLMTEPMQVPEAAV" misc_feature 731623..>731946 /locus_tag="Alide2_0705" /note="Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Region: CDA1; COG0726" /db_xref="CDD:31070" misc_feature 731779..>731901 /locus_tag="Alide2_0705" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" misc_feature <732154..732393 /locus_tag="Alide2_0705" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene 732543..733556 /locus_tag="Alide2_0706" /db_xref="GeneID:10481727" CDS 732543..733556 /locus_tag="Alide2_0706" /inference="protein motif:PFAM:PF01522" /note="PFAM: Polysaccharide deacetylase; KEGG: tgr:Tgr7_2375 polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_004386638.1" /db_xref="GI:330823335" /db_xref="GO:0004066" /db_xref="InterPro:IPR002509" /db_xref="GeneID:10481727" /translation="MSIAVSLKDGLRTALYRCGALGAWHRWRNRRVLTVLMFHRVLPS DDPAFALAEREFTFTLGGFRRTLDFVQRHYSVLGLDDLQAARREQRPLPPNPMLITFD DGWRDTLTHAVPELARRGLPAVLFLASEVVALDSPRWWQDALVAALEEPGASARLCAA AGWTEKPQGSVSQAPAAHLGAMPEAERCAWLEQHAPGVLGQVAERQMVTLGELKALEA GRLAIGGHGHTHSPLTLSPDPEAELQASEHMLGELNQPVRSMSFPHGAWSSTLVAVAR KSGFEWMFTSDAVLADVSRWPSPLPALGRIHVPENAWTCRAGDIDSARLATFLFFRPL QRH" misc_feature 732639..>732917 /locus_tag="Alide2_0706" /note="poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB; Region: deacetyl_PgaB; TIGR03938" /db_xref="CDD:188453" misc_feature 732810..>732941 /locus_tag="Alide2_0706" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" misc_feature <733134..733382 /locus_tag="Alide2_0706" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene 733568..734605 /locus_tag="Alide2_0707" /db_xref="GeneID:10481728" CDS 733568..734605 /locus_tag="Alide2_0707" /inference="similar to AA sequence:KEGG:Psta_3837" /note="KEGG: psl:Psta_3837 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386639.1" /db_xref="GI:330823336" /db_xref="GeneID:10481728" /translation="MNTDRLRIRRKPFNMLTAAERDGWARLLDENSSSRWAFLSPTYA EAVNATVDPVDVLLCWRDDELVGVMPLQRSAGWLGRLGLREPVGRQMTDYFGLLARFE VRLEWQSLLKAAGIPCLYFTHLDESQTVHGLAGDSPRKGLRTHIHSDGGDTYWELLRA RKRKVVSEIERRERKLVTEHGSLTFEMQSAAPAQDLELLVALKNAQYLRTGHDGGALL NPANVRLLNRLLESRDPLCLPRLSVLRCGGQLVAGHFGLQCGPLLHYWFPAYDSRLAA YSPGRVLYRHILSKARDYGIACIDHGEGDSVAKRDFANDEHQYLKGLVSANPWGQALG LIQRLRWRFAA" misc_feature 733613..734596 /locus_tag="Alide2_0707" /note="Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]; Region: COG5653" /db_xref="CDD:35212" gene complement(734606..735553) /locus_tag="Alide2_0708" /db_xref="GeneID:10481729" CDS complement(734606..735553) /locus_tag="Alide2_0708" /inference="protein motif:PFAM:PF00535" /note="PFAM: Glycosyl transferase, family 2; KEGG: tkm:TK90_2524 glycosyl transferase family 2" /codon_start=1 /transl_table=11 /product="family 2 glycosyl transferase" /protein_id="YP_004386640.1" /db_xref="GI:330823337" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10481729" /translation="MNRPRVSVIIPVRNGKDYLQEALDSVLQQSFTDLELLLIDDGST DDDYDRYALQDKRVRVIHLQGMGVSRARNVGMAQSRGDLLAFLDADDVWFPGKLQAQV NYFDAHPEVGIVFGKFIRWQALPSGAFAPARSLMQDASKLTHADPERSGWLYTRLLGG LLVGMNTAVVRRTVYEAIGGFNEAMRQGEDYDFWLKASRVAEMHSLNGPVALYRIHGA SAMHRLSPENHLVNLLNAAAIRWGLDTVNDQSLTPKSFHERLARVYFDHAYAHYWHGD RTIARAAFWHALRRGHHPLRCLAYIALSYWTGHAKPSTH" misc_feature complement(734630..735550) /locus_tag="Alide2_0708" /note="Predicted glycosyltransferases [General function prediction only]; Region: COG1216" /db_xref="CDD:31409" misc_feature complement(734888..735535) /locus_tag="Alide2_0708" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature complement(order(735284..735286,735290..735292, 735437..735439,735515..735517,735521..735523)) /locus_tag="Alide2_0708" /note="active site" /db_xref="CDD:132997" gene complement(735666..737087) /locus_tag="Alide2_0709" /db_xref="GeneID:10481730" CDS complement(735666..737087) /locus_tag="Alide2_0709" /inference="protein motif:PFAM:PF01943" /note="PFAM: Polysaccharide biosynthesis protein; KEGG: nwa:Nwat_1744 polysaccharide biosynthesis protein" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein" /protein_id="YP_004386641.1" /db_xref="GI:330823338" /db_xref="InterPro:IPR002797" /db_xref="GeneID:10481730" /translation="MQFLVSNLALVANFVLSIVLARLLTPQDIGIFSMSAVLMAVAHV FRDFGVTAFIKREKELTTETLRNALGVLLITSWSVATIMFFSAPYWAHFFHEARVVPA VQVLALGFVFIPLGAIPMAILSREMAVEKSALITAVTSAVYFGASVMLALADFGPMTM AWANLVNIITTGAMARWVVDRPLPWLPSFRQLHDIVHFGLGNLLTALLKAADNALPDI LLGRWMTPAAVGLFSRANSTVNMVGTALLPTVNFFALPYMAKVHHTHGPVAGEYLRAS SLINALMLPALAAIAVLAHDIVSLLYGRAWLEAVPAIPWLCLSYAISSLFTLSAPALT GVGKPYAAIGPNAVLVAAKVVCAVWLMDGTLHTFALAVALGQLMSVPYYLWIHERYLG LRWTAWIRSTMSLVAQALLVGCVCLGIRQMLPQDMPPWIAIVVTGVCAMLAFLIGCLL LRLPMADELKRLQHALMQRRRSP" misc_feature complement(735729..737084) /locus_tag="Alide2_0709" /note="Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244" /db_xref="CDD:32425" misc_feature complement(735702..737066) /locus_tag="Alide2_0709" /note="Polysaccharide biosynthesis protein; Region: Polysacc_synt; cl10513" /db_xref="CDD:187004" gene complement(737184..738281) /locus_tag="Alide2_0710" /db_xref="GeneID:10481731" CDS complement(737184..738281) /locus_tag="Alide2_0710" /EC_number="5.1.3.2" /inference="protein motif:PRIAM:5.1.3.2" /note="KEGG: pol:Bpro_3996 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="UDP-glucose 4-epimerase" /protein_id="YP_004386642.1" /db_xref="GI:330823339" /db_xref="InterPro:IPR001509" /db_xref="GeneID:10481731" /translation="MNNMDQRSSAYELLKSRLINEQHVWLVTGVAGFIGSNLLETLLK LNQRVVGLDNFATGHQRNLDEVQSLVTPDQWANFRFIEGDIRSLNDCRNAMQFSPARS GNTDVKNEAVEYVLHQAALGSVPRSLADPITTNSANITGFLNVLATARDAGVKSFTYA ASSSTYGDHPALPKVENIIGKPLSPYAVTKYVNELYAEVFARCYGFRTIGLRYFNVFG SRQDPNGAYAAVIPKWTAALLTRETVYINGDGETSRDFCYVANAVQANLLAATVIGSE ATNQVYNIAVGGRTTLNQLFALLRENLAQFGVDPVVQPAYRDFRAGDVRHSQADIGKA MTLLGYAPTHSIAEGLREAMRWYVDLQRQPQ" misc_feature complement(737205..738257) /locus_tag="Alide2_0710" /note="Vi polysaccharide biosynthesis protein TviC; Provisional; Region: PRK15181" /db_xref="CDD:185103" misc_feature complement(737211..738209) /locus_tag="Alide2_0710" /note="UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs; Region: UDP_AE_SDR_e; cd05256" /db_xref="CDD:187566" misc_feature complement(order(737598..737600,737634..737645, 737712..737714,737724..737726,737796..737804, 737871..737873,737916..737918,737922..737930, 738027..738035,738108..738125,738180..738191, 738195..738197)) /locus_tag="Alide2_0710" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187566" misc_feature complement(order(737301..737303,737310..737315, 737322..737324,737406..737408,737520..737522, 737526..737528,737541..737549,737580..737585, 737592..737597,737637..737639,737643..737645, 737724..737726,737790..737798,737913..737918)) /locus_tag="Alide2_0710" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187566" misc_feature complement(order(737670..737672,737682..737687, 737694..737699,737706..737711,737715..737720, 737727..737738,737832..737834,737841..737843, 737853..737855,737862..737867,737877..737879, 737886..737891,737898..737903)) /locus_tag="Alide2_0710" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187566" misc_feature complement(order(737712..737714,737724..737726, 737796..737798,737868..737870)) /locus_tag="Alide2_0710" /note="active site" /db_xref="CDD:187566" gene complement(738308..739585) /locus_tag="Alide2_0711" /db_xref="GeneID:10481732" CDS complement(738308..739585) /locus_tag="Alide2_0711" /inference="protein motif:TFAM:TIGR03026" /note="manually curated; TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: reu:Reut_B5375 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal" /codon_start=1 /transl_table=11 /product="nucleotide sugar dehydrogenase" /protein_id="YP_004386643.1" /db_xref="GI:330823340" /db_xref="GO:0004066" /db_xref="GO:0051287" /db_xref="InterPro:IPR001732" /db_xref="InterPro:IPR014026" /db_xref="InterPro:IPR014027" /db_xref="InterPro:IPR017476" /db_xref="GeneID:10481732" /translation="MNLSHEKIAIIGLGYVGLPLAVEFGKHRPVLGFDVNAARIAELQ SGRDSTLEVSPGDLRAATHLRYSASTEDLRDCRVFIVTVPTPVDKANRPNMTPLIKAS ETVGTVMPEGAVVIYESTVYPGATEEVCVPVLEKFSGKEFNVSFFCGYSPERINPGDK EHRLPTIKKVTSGSTPEVAEAVDQLYKQIITAGTHKASSIKVAEAAKVIENTQRDINI ALMNELSLIFHRLGIDTLEVLQAAGTKWNFLSFRPGLVGGHCIGVDPYYLTHKAQEVG YHPEVILAGRRVNDNMANHVADQTVKLMLRKGLPVLGSKVLVLGLTFKENCPDVRNTK VVDIVRRLQGYNTQVDVFDPWINLEEAEHEYGLKCLAEMPAPGQYAAVVLAVGHHQFM TLGEVGIKALGQRDAVLFDVKGILPLGTADGRL" misc_feature complement(738311..739567) /locus_tag="Alide2_0711" /note="Vi polysaccharide biosynthesis protein TviB; Provisional; Region: PRK15182" /db_xref="CDD:185104" misc_feature complement(738704..738988) /locus_tag="Alide2_0711" /note="UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984" /db_xref="CDD:144540" misc_feature complement(738338..738637) /locus_tag="Alide2_0711" /note="UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Region: UDPG_MGDP_dh_C; pfam03720" /db_xref="CDD:190725" gene complement(740089..741981) /locus_tag="Alide2_0712" /db_xref="GeneID:10481733" CDS complement(740089..741981) /locus_tag="Alide2_0712" /inference="similar to AA sequence:KEGG:Hsero_2760" /note="KEGG: hse:Hsero_2760 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386644.1" /db_xref="GI:330823341" /db_xref="GeneID:10481733" /translation="MPVTFGQPFKAGDWQFTTQGLVAKVDGATIPLQADEISSHRDGS ARFAVLSTQLSTLQPGQSKIINLYTGAKSTSTPSVPSNPDWNLELEAQVYDTNGSITT LVAQPQADLVKQIANNTGRRLSGAVANEYTVALPFKNKATGATHPHLTARLHTRLVDG GQRIRTDVVMENTRTWTANPGNITYSFAVKRNGSTIYTQPKFTHYHHARWHKVIWTGA SAEPQARVRHNMPYFMASKAIWNYDLSLSIPEAVLSDFYKQYTQAKTSQANLGPMANL MLTPAFGTTGGRPEIGPVPQWTAMYLISQDDRMKEVMLAHADAAGSVPIHYRDDSSNL PLDLDRFPNVSTWLGSSQPALPTVVNGTTIWQPDTAHQASYAYVPYLVTGDAFFQDEL MYWAAWNLTAMNPAYRGAGQGLLWEDQVRGQAWTMRALGEASRIIPDTHAMKAYFQRR LSNSLEWFYQNWVVTPAADVSPMSSPVNPYDTTTVGPWQNDFWAIVMAQHAEAGEPRA MELLNWVSKFGVGRFMNEAQGFCLAKAPAYYLQLKNSSGQWIRSWSELAQVNFPGVTC NGSLEYDGYPTWSGGYAANARAMLAAVSSLNITNAATAYTLWKSKTSSMDKDFLNNPT WAIVPR" gene 742681..743748 /locus_tag="Alide2_0713" /db_xref="GeneID:10481734" CDS 742681..743748 /locus_tag="Alide2_0713" /inference="similar to AA sequence:KEGG:Hsero_2738" /note="manually curated; KEGG: hse:Hsero_2738 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386645.1" /db_xref="GI:330823342" /db_xref="GeneID:10481734" /translation="MTRCISDENATERVVQCAPFVEEGCVLGDVFQSEAWFANLLAHG FERPPRGHWALPLPSRSSEPVHLHLMQESSAGSLCSLSNYYSCLYGPVGSTRAIQDVS VAQWQAAAHALRQLPGSSVLRLQPLDADGAWLAGLEGGLRAAGYWTDRFFCFGNWYQP VPGGGFADYWRQRPSALRHSVERGRRRLDRAGGAWHIDIIADASPGLDACLAAYLAVY AKSWKSPEPCPDFMPALVRMAAREGWLRLGVLWLGEQPLAAQVWLVCDGKANIYKLAY VKGQERLSAGSVLTAALMQRAMDVDRVLEVDYLSGDDAYKRDWMAMRRERVGLVAFDP RRLPGLLAAGRHFAGRMLRRR" misc_feature <743368..743712 /locus_tag="Alide2_0713" /note="Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]; Region: COG5653" /db_xref="CDD:35212" gene complement(743851..744609) /locus_tag="Alide2_0714" /db_xref="GeneID:10481735" CDS complement(743851..744609) /locus_tag="Alide2_0714" /inference="protein motif:TFAM:TIGR02595" /note="KEGG: cyt:cce_4547 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial" /codon_start=1 /transl_table=11 /product="PEP motif putative anchor domain-containing protein" /protein_id="YP_004386646.1" /db_xref="GI:330823343" /db_xref="InterPro:IPR011449" /db_xref="InterPro:IPR013424" /db_xref="GeneID:10481735" /translation="MKALKTLVASAVLAMSTGAFAATVLPGSETSLQTIINNAYGGPG ASPVSAAPNVNTNQAGAELFQIEASGGSIATMILEIAGNANINTFGIYDPYNTATQLQ LFSGSASSGAQVAITVDASNQFKAVDLTNGGILGSMLFTSSTFGYYLSGPGGTFFSQA SQNGGNEQMVSYQGDGDTVQFPGRATGVWGSSSYVLGWEDQSLSGGSDRDYNDMVVYV ESVTKVPEPGSLALLGLGLSGLAFVSRRKQKGAK" sig_peptide complement(744544..744609) /locus_tag="Alide2_0714" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" gene complement(744804..745646) /locus_tag="Alide2_0715" /db_xref="GeneID:10481736" CDS complement(744804..745646) /locus_tag="Alide2_0715" /inference="protein motif:TFAM:TIGR03100" /note="KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family protein; TIGRFAM: Hydrolase, ortholog 1, exosortase system type 1 associated; PFAM: Alpha/beta hydrolase fold-1" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="YP_004386647.1" /db_xref="GI:330823344" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR017531" /db_xref="GeneID:10481736" /translation="MNVQEQPIHIAGDGFDMLGILTLPAPDTPMRHIGVVVVVGGAQH RVGSHRQFVRLARRLAAAGHPVLRFDLPGMGDSPGEPVPFENTAPHIAAAVEAMLRAA PVRHAVLWGLCDGASASLLYMQATQDPSVTGLALLNPWVRSEAGLARARVKHYYRQRI LEPDFWRKLASGGVGLTALRSAWNNLRAMRHAVAPSLSFQERMAHAWQAFEGKILLIL SERDLTAQEFVEYTATQSAWSHVLQRPGVSRHDIAGADHTFSQPAWQLQVEDLTLAWL GAMA" misc_feature complement(744819..745520) /locus_tag="Alide2_0715" /note="hydrolase, ortholog 1, exosortase system type 1 associated; Region: hydr1_PEP; TIGR03100" /db_xref="CDD:132144" gene complement(745643..746497) /locus_tag="Alide2_0716" /db_xref="GeneID:10481737" CDS complement(745643..746497) /locus_tag="Alide2_0716" /inference="protein motif:TFAM:TIGR03101" /note="TIGRFAM: Hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: app:CAP2UW1_4344 hydrolase, exosortase system type 1 associated" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="YP_004386648.1" /db_xref="GI:330823345" /db_xref="InterPro:IPR017532" /db_xref="GeneID:10481737" /translation="MSPRARAALPQAFFLTTDTGQRFCLFHPPQGATPLGRVLYLHPF AEELNSTRRVVAGQARALAQAGYGVLQIDLLGCGDSAGDFADATWAAWLHDAQQAHRW LDDHASGPLWLWGMRSGALLAAQLAALLQAPGTAPTHLLLWQPVASGQQMLQQFLRLR AASQWLGAGSTGEPPPSQTLAQGLAIAIAGYTLSPRLAQGLAEAHMPDPGSLQPGRLV WLETSAAQTPSLSPAAGKQLSAWHAAGWQVQAQAVESPPFWQTVGTDEAPALVQATLA ALTHPPQA" misc_feature complement(745670..746467) /locus_tag="Alide2_0716" /note="hydrolase, ortholog 2, exosortase system type 1 associated; Region: hydr2_PEP; TIGR03101" /db_xref="CDD:163135" misc_feature complement(746204..746431) /locus_tag="Alide2_0716" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(746499..746759) /locus_tag="Alide2_0717" /db_xref="GeneID:10481738" CDS complement(746499..746759) /locus_tag="Alide2_0717" /inference="similar to AA sequence:KEGG:Rfer_0698" /note="KEGG: rfr:Rfer_0698 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386649.1" /db_xref="GI:330823346" /db_xref="GeneID:10481738" /translation="MNLTEQVLHVLDNALSLQGRATAFDRDTPLLGSLPELDSMAVLA VITGLENHFAITFSDDELHGAVFATVGSLCDLVEQSLARQAS" misc_feature complement(746523..746753) /locus_tag="Alide2_0717" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" gene 746843..748489 /locus_tag="Alide2_0718" /db_xref="GeneID:10481739" CDS 746843..748489 /locus_tag="Alide2_0718" /EC_number="6.2.1.3" /inference="protein motif:TFAM:TIGR03098" /note="TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; KEGG: app:CAP2UW1_1626 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="acyl-CoA ligase" /protein_id="YP_004386650.1" /db_xref="GI:330823347" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR017529" /db_xref="GeneID:10481739" /translation="MRRMPQESDFQRGIPPVLLHELPARAAACWPDRTALTVDGAHLS YAGLQSQIECCAAGLLALGLERGARVAVYLEKRVEAVVASFAAPAAGGVLVPVNPLLK AGQVAHILQDAEAQVLVTSAARLALLAPALADCPGLRHVVLCDEGAPGASAPLAGGIA LHGWPEVLAGRPAGLPQALDMDVAVIFYTSGSTGRPKGVVLSHRNLVSGAVSVASYLH NHADDTLLAVLPLSFDAGFSQLTTAFLVGARVVLLNYLLPRDVLQAMVRERVTGLTAV PPLYMQLAAQDWPAAAAQHLRYFANTGGHMPRATLQRLRSLAPTAAPYLMYGLTEAFR STYLPPEEVDRRPDSIGRAIPNAQVCVLRDDGTECAVDEPGELVHRGALVALGYWRRP EETALRFRPWPPALLAAGGGWAAPELAVYSGDTVRRDADGFLYFVGRRDEMIKTSGYR VSPTEVEEVLYASGLVAEALVYARPDDALGSVICAALLASPRASGHAGDDNAALMAHC SKHLPAFMLPKMLQWVEQPLPRSPNGKLDRQRWMLEHGSI" misc_feature 746894..748456 /locus_tag="Alide2_0718" /note="acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; Region: ligase_PEP_1; TIGR03098" /db_xref="CDD:188281" misc_feature 747371..>747604 /locus_tag="Alide2_0718" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature <747767..748465 /locus_tag="Alide2_0718" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 748476..749681 /locus_tag="Alide2_0719" /db_xref="GeneID:10481740" CDS 748476..749681 /locus_tag="Alide2_0719" /EC_number="4.1.1.20" /inference="protein motif:TFAM:TIGR03099" /note="TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal" /codon_start=1 /transl_table=11 /product="pyridoxal-dependent decarboxylase" /protein_id="YP_004386651.1" /db_xref="GI:330823348" /db_xref="InterPro:IPR017530" /db_xref="InterPro:IPR022643" /db_xref="InterPro:IPR022644" /db_xref="GeneID:10481740" /translation="MDQFDTTHDELRVGGLPLSLLAERVGQTPFYAYDRSLIAARVAG VRQVLPQGVLLHYAIKANPMPALVGFMRPLVDGMDVASAGELKLALDAGADPQTIGFA GPGKRDAELRQAVAAGVLLHVESARELEALAASAQALGRPARVALRINPDFELRGAGM HMGGGPKPFGIDAEQVPAMLRAMARDGLAFEGFHIYPGSQNLRGNVIAESLHRSVELV QRLAHDAPAPVRYVNLGGGWGIPYVAGERRLELPPVADALAQVQAALGRALPEAQMVL ELGRYLVGEAGIYVARVIDRKVSRGQVFLVTDGGMHQHLAASGNFGQVIRRNYPVVIG NRLQAAERESATVVGPLCTPLDVLAERMELAVAQPGDLVVVLQSGAYGATASPQAFLG HPPCAEVLV" misc_feature 748485..749678 /locus_tag="Alide2_0719" /note="pyridoxal-dependent decarboxylase, exosortase system type 1 associated; Region: dCO2ase_PEP1; TIGR03099" /db_xref="CDD:132143" misc_feature 748539..749678 /locus_tag="Alide2_0719" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase; Region: PLPDE_III_Btrk_like; cd06839" /db_xref="CDD:143506" misc_feature order(748557..748559,748653..748655,748716..748721, 748725..748730,748794..748796,748845..748847, 748854..748856,748866..748868,748974..748985, 749355..749366,749385..749387,749391..749393, 749397..749399,749406..749408,749520..749522, 749526..749534,749541..749543,749625..749633, 749643..749651) /locus_tag="Alide2_0719" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143506" misc_feature order(748647..748649,748653..748655,748710..748712, 748779..748781,748917..748919,749061..749063, 749070..749072,749181..749186,749304..749315, 749529..749534,749616..749618,749628..749630, 749643..749645) /locus_tag="Alide2_0719" /note="active site" /db_xref="CDD:143506" misc_feature order(748647..748649,748653..748655,748710..748712, 748779..748781,748917..748919,749061..749063, 749070..749072,749181..749186,749304..749315, 749529..749531,749616..749618) /locus_tag="Alide2_0719" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143506" misc_feature order(748653..748655,749529..749531) /locus_tag="Alide2_0719" /note="catalytic residues [active]" /db_xref="CDD:143506" misc_feature order(749070..749072,749313..749315,749529..749534, 749616..749618,749628..749630,749643..749645) /locus_tag="Alide2_0719" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143506" gene 749684..751765 /locus_tag="Alide2_0720" /db_xref="GeneID:10481741" CDS 749684..751765 /locus_tag="Alide2_0720" /inference="protein motif:TFAM:TIGR02916" /note="TIGRFAM: Signal transduction histidine kinase, PEP-CTERM system, putative; PFAM: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: rfr:Rfer_0703 periplasmic sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_004386652.1" /db_xref="GI:330823349" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR014265" /db_xref="GeneID:10481741" /translation="MDGSESAVIYSGWAWAAVAYALLSLRLVQQEYLKKPVNRIAMAM LAAALLSVAWSGFSFLALTVNAAWWLGAQSADILRYLAWGVFVFLFFNRNTGDISSPW YRWWPGLAVLAVLGAPPLVVGMHALAGPAGHVFVMVLLAVAGLVLVEQLFRNLPEDAL WSAKPVCLGLAGTFLFDLYLFSQGLLLQGLDPDALKVRPFVHALMVPLLLLATTRHRN WIAKIRVSRKVIFHSATLVLVGLYLLFMAGVGYYVRYFGGEWGGALQLGLVFVAAVLA IAFVLSGSLRAKLRVFLGKHFFRYRFDYREEWLKFTATLSSQDQPQEAGRSVIRGLAD MLESPAGALWLRRPEDDQYRQVARWNLAPATQTVDRHAELLEFMRATGWVINLEELRA EPVRYNDLRLPEWLAEYPQAWLLVPLWQGKDLLGFVLLASPRTRVDVNWEVIDLLKTA GHQAASILAQMQATEALLESRKFEAFNRMSAFVVHDLKNIVAQLSLMVKNAKRLQNNP EFQADMLMTVENSLERMRQLMQQLRQGAASGAASAGVDLGRIAERLAAEALGRGRTVQ LEASSQVFTRGQADRLERIIGHLLHNAFDATDADGRVWVKVDRFGSHARIEVGDEGQG MTEEFVQTRLFKPFQTTKEAGMGIGTYESFQYVQELGGKISVDSKVGRGTVVSLLLPL IEISRDSDLHL" misc_feature <750128..751726 /locus_tag="Alide2_0720" /note="putative PEP-CTERM system histidine kinase; Region: PEP_his_kin; TIGR02916" /db_xref="CDD:163071" misc_feature 751427..751723 /locus_tag="Alide2_0720" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(751445..751447,751457..751459,751466..751468, 751535..751537,751541..751543,751547..751549, 751553..751558,751622..751633,751679..751681, 751685..751687,751700..751705,751709..751711) /locus_tag="Alide2_0720" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 751457..751459 /locus_tag="Alide2_0720" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(751547..751549,751553..751555,751622..751624, 751628..751630) /locus_tag="Alide2_0720" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 751774..753135 /locus_tag="Alide2_0721" /db_xref="GeneID:10481742" CDS 751774..753135 /locus_tag="Alide2_0721" /inference="protein motif:TFAM:TIGR02915" /note="TIGRFAM: Signal transduction response regulator, PEP-CTERM system, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: rfr:Rfer_0704 two component, sigma54 specific, fis family transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Fis family two component sigma54 specific transcriptional regulator" /protein_id="YP_004386653.1" /db_xref="GI:330823350" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR014264" /db_xref="GeneID:10481742" /translation="MSTDKLQQPLLVVEDDLALQKQIKWSLDRFESVTAHDRESAMTQ VRRYAPAVVTMDLGLPPDADSVSEGFKLLEQILAAAPDTKVIVLTGQNDQSNAVKAVG MGAYDFLAKPFEPEVLNLCVERAFRLHHLQAENKRLRAMQMPDALSGLVTRDPQMLRI CRTIEKVANTNASVMLLGESGTGKEVLARGLHQQSNRKGNFVAINCAAIPENLLESEL FGYEKGAFTGAAKTTPGKIETAHGGTLMLDEIGDMPMPLQAKLLRFLQERIVERVGGR QGIPVDVRVVCATHQNLAQCIKEGRFREDLYYRLAEIVVEIPPLRARVGDAALLAHSF VRRFGGEHGRSLTLADDALRAIETYSWPGNIRELENRIKRATIMADGNQITADDVGLA GADGTEDDRSLDLRLTREAAEQRAVLAALARADGTVAKAADLLGVSRPTLYDLMHRLG LKI" misc_feature 751801..753129 /locus_tag="Alide2_0721" /note="PEP-CTERM-box response regulator transcription factor; Region: PEP_resp_reg; TIGR02915" /db_xref="CDD:163070" misc_feature 751804..752151 /locus_tag="Alide2_0721" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(751813..751818,751939..751941,751978..751980, 752038..752040,752095..752097,752104..752109) /locus_tag="Alide2_0721" /note="active site" /db_xref="CDD:29071" misc_feature 751939..751941 /locus_tag="Alide2_0721" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(751948..751953,751972..751980) /locus_tag="Alide2_0721" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 752104..752112 /locus_tag="Alide2_0721" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 752278..752730 /locus_tag="Alide2_0721" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 752305..752328 /locus_tag="Alide2_0721" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(752308..752331,752515..752517,752641..752643) /locus_tag="Alide2_0721" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 752503..752520 /locus_tag="Alide2_0721" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 752698..752700 /locus_tag="Alide2_0721" /note="arginine finger; other site" /db_xref="CDD:99707" gene 753159..755939 /locus_tag="Alide2_0722" /db_xref="GeneID:10481743" CDS 753159..755939 /locus_tag="Alide2_0722" /inference="protein motif:TFAM:TIGR02917" /note="KEGG: rfr:Rfer_0705 tetratricopeptide TPR_2; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein, putative; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; Tetratricopeptide TPR-1" /codon_start=1 /transl_table=11 /product="PEP-CTERM system TPR-repeat lipoprotein" /protein_id="YP_004386654.1" /db_xref="GI:330823351" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR011717" /db_xref="InterPro:IPR013105" /db_xref="InterPro:IPR014266" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10481743" /translation="MTAITSRTLVPAAALTVALLMSACGRDDPDALVASAQDYLSRND APAAIIQLKNALQSRPDSAKARLLLGQALLDTGDAQGAETEFRKAQDLGVPPAEVVPQ LALALLRSRQYSKITSDYAGQRLADAQAQANLQTTLAIAWQRQGDEAKAQGSLDEALK AKADYAPALIEQARSKVRGGDVDGALAGLGQIPRQSSVGAEALKLRGDILLHNKRDAD AAMAAYRDALEVKPSYVEGQAAIVELLIFQGKTTAAAESLQALEKAAPGRPQTLYLQA MLAYTKGDFKAAQENVQKLVRMAPESARALELAGMTDLQLGANAQAEASLAKALQLNP GLAMARRGLVTTYMRLGRLDKAIATLPSDIDGNDRDPGMLGLAGQAYMLQGDVDRAQR YFARASRLVPNDAVMRTSLAVSHLASGKGDAALGELRSIAASDEGVVADMALINALLQ ERKVEEALKAIDLLEKKRPADVLPVFLRGRALLLKQDTAGARKAMERALEIDPGYFPA AGVLAVLDNAEKRPDDARARIEAAIKRDPGNVQAYMVLMELRAANGADRAELAGILRK AVDGAPSSPIPRQLLVDHYLRGGETKEALAVAQQAVAALPDNAQLFDALGRAQSANGE HNQALASFNRMAALQPQSPVPYLRMAGANLIAGDRTAAGQSWRKALEIDPTALEAQQG LVRLAMADRKSGDALAMSRTVQKQRPKEAAGYALEGEIHVADKAWDKAIDVFRAGLKQ VPASGELAVRLHEVLVTAGKKSEADRLATEWQRSHAKDATFPLYLGTRALAAKDLPES LRQYERAVALQPNNAIALNNMAWIKGQLGRDGALADAERANALAPNQPAFMDTWAMLL SAASQHARAVDLQKRVVQLRPQQLEFKLNLAKIYIKAGQKDAAKAVLDELAAAGARFP AQAEVEELRKAL" misc_feature 753219..755840 /locus_tag="Alide2_0722" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" misc_feature 753885..754160 /locus_tag="Alide2_0722" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(753885..753890,753975..753980,753984..753989, 753996..754001,754077..754082,754089..754094, 754101..754106) /locus_tag="Alide2_0722" /note="binding surface" /db_xref="CDD:29151" misc_feature order(753918..753920,753930..753932,753939..753941, 753984..753986,754020..754022,754032..754034, 754041..754043,754086..754088,754122..754124, 754134..754136,754143..754145) /locus_tag="Alide2_0722" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 754071..754367 /locus_tag="Alide2_0722" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(754071..754073,754077..754082,754089..754094, 754179..754184,754188..754193,754200..754205, 754281..754286,754293..754298,754305..754310) /locus_tag="Alide2_0722" /note="binding surface" /db_xref="CDD:29151" misc_feature order(754086..754088,754122..754124,754134..754136, 754143..754145,754188..754190,754224..754226, 754236..754238,754245..754247,754290..754292, 754326..754328,754338..754340,754347..754349) /locus_tag="Alide2_0722" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 754488..754769 /locus_tag="Alide2_0722" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(754491..754493,754527..754529,754539..754541, 754548..754550,754593..754595,754629..754631, 754641..754643,754650..754652,754695..754697, 754731..754733,754743..754745,754752..754754) /locus_tag="Alide2_0722" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(754494..754499,754584..754589,754593..754598, 754605..754610,754686..754691,754698..754703, 754710..754715) /locus_tag="Alide2_0722" /note="binding surface" /db_xref="CDD:29151" misc_feature 755001..755285 /locus_tag="Alide2_0722" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(755004..755006,755040..755042,755052..755054, 755061..755063,755106..755108,755142..755144, 755154..755156,755163..755165,755208..755210, 755244..755246,755256..755258,755265..755267) /locus_tag="Alide2_0722" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature order(755007..755012,755097..755102,755106..755111, 755118..755123,755199..755204,755211..755216, 755223..755228) /locus_tag="Alide2_0722" /note="binding surface" /db_xref="CDD:29151" gene 755989..756774 /locus_tag="Alide2_0723" /db_xref="GeneID:10481744" CDS 755989..756774 /locus_tag="Alide2_0723" /inference="protein motif:PFAM:PF00089" /note="PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: rfr:Rfer_0710 peptidase S1 and S6, chymotrypsin/Hap" /codon_start=1 /transl_table=11 /product="peptidase S1 and S6 chymotrypsin/Hap" /protein_id="YP_004386655.1" /db_xref="GI:330823352" /db_xref="GO:0004252" /db_xref="InterPro:IPR001254" /db_xref="GeneID:10481744" /translation="MPPRRVALWALAWLLQCLWAGGALAQLPDTIERVKPSVVLVGTY AATDNPRFRYVGAGFVVGDGLRVVTSAHVVTRMNMLSPDGQALAVQVRSGPVAWLMRK ARVIELNLEQDLALLQIEGPPVAALQVASSDHVREGDELAFMGFPIGGVLGFASVTHR AGVASITTMALPSPTSQQLSERAILSLRAGPVQVLQLDATAYPGNSGGPLFDPRSGAV LGVISMVHIKSTREAAMSQPSGISYAIPSRYVLELLARHQSAP" sig_peptide 755989..756066 /locus_tag="Alide2_0723" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.992 at residue 26" misc_feature 756160..756663 /locus_tag="Alide2_0723" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" gene complement(756802..757167) /locus_tag="Alide2_0724" /db_xref="GeneID:10481745" CDS complement(756802..757167) /locus_tag="Alide2_0724" /inference="similar to AA sequence:KEGG:azo0349" /note="KEGG: azo:azo0349 putative small multi-drug resistant family protein" /codon_start=1 /transl_table=11 /product="putative small multi-drug resistant family protein" /protein_id="YP_004386656.1" /db_xref="GI:330823353" /db_xref="GeneID:10481745" /translation="MNTFAIALLSIVLSVTAQFSLKAGMSQPGVQAAMAQPFSLGSLV SIIANRYVLGGFVLYGLGAVIWLGVLSKWDVSKAYPLVGLGFVFTVLAGLMVGEQVSP LRAGGVALICAGVFVVARS" sig_peptide complement(757099..757167) /locus_tag="Alide2_0724" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.522 at residue 23" misc_feature complement(756805..>756978) /locus_tag="Alide2_0724" /note="Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910" /db_xref="CDD:186252" gene complement(757164..758612) /locus_tag="Alide2_0725" /db_xref="GeneID:10481746" CDS complement(757164..758612) /locus_tag="Alide2_0725" /inference="protein motif:PFAM:PF01040" /note="PFAM: UbiA prenyltransferase; KEGG: azo:azo0348 hypothetical protein" /codon_start=1 /transl_table=11 /product="UbiA prenyltransferase" /protein_id="YP_004386657.1" /db_xref="GI:330823354" /db_xref="GO:0004659" /db_xref="InterPro:IPR000537" /db_xref="GeneID:10481746" /translation="MIDTADIPLVVDLDGTLTPTDTLLESVVQLVKRSPSSLLLLPWW LLRGRAGFKEAVSTRAAIDAERLPYNAPLLDYLREEKSRGRQIVLATAAHHSIAQAVS GRLGVFDKVLATQSGSNLKGPAKLQAIQDNVGEAFVYAGDCAADLPIWKQARAAILVG VPQRIAEQVRQSTPIERDFQRPETGLATWLRALRVHQWAKNVLLFVPLLTTFEFTDIG KLVHIVLAFMAFSLAASATYVVNDLWDLGNDRVHPRKRLRPFASGALPIHHGLLVAGA ALALALALAATVSPGFAWMLLAYLVLTSSYSWVIKEYVLMDVLMLSLLYTIRILAGSV AIGVTTSSWLLAFSAFTFLSLALVKRCAELVSLKEAGAPATRGRDYRVSDLVVLWPLG VGAALCAVVVFGLFISAPETQARYATPQILWLVAIGLVYWMARLWIKTSRGEMHDDPV VYALKDRGSRLTVLAMIAAVMVAHFSALEFFP" misc_feature complement(757191..758612) /locus_tag="Alide2_0725" /note="hypothetical protein; Validated; Region: PRK08238" /db_xref="CDD:181313" misc_feature complement(758160..758465) /locus_tag="Alide2_0725" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature complement(757194..758075) /locus_tag="Alide2_0725" /note="UbiA prenyltransferase family; Region: UbiA; cl00337" /db_xref="CDD:193776" gene complement(758662..759555) /locus_tag="Alide2_0726" /db_xref="GeneID:10481747" CDS complement(758662..759555) /locus_tag="Alide2_0726" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_4993 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386658.1" /db_xref="GI:330823355" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481747" /translation="MTRPLHPREIEAFRAVIQTGTTTAAAQLLHTTQPSVSRLLSQMQ AAAGLKLFDMHKGRLRPTSEAMDLYTTVQQHFLGRERIERKLAVLRQSGAGALRIGCT PALGLSVIPAAVHSFAQHYPGTHLSLQTLGTTALREGLLHGHFDLVVSTMAIATPELD ATVLHRSHAVCVMHPQHPLAARGKLHVRDLQDQLLLTLNADDNIFLQLQHTMQAHGIQ AGSTIETTYSSTICCLAAQGLGLGVVNPYVASLFARDLHILPLLPHCAVEVVLALAPQ YAPSERADCFIESLRTQFKRH" misc_feature complement(758677..759534) /locus_tag="Alide2_0726" /note="DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013" /db_xref="CDD:182899" misc_feature complement(758686..759267) /locus_tag="Alide2_0726" /note="The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold; Region: PBP2_LysR_opines_like; cd08415" /db_xref="CDD:176107" misc_feature complement(order(758845..758850,758854..758859, 758875..758892,759166..759186,759190..759192, 759202..759204,759211..759216,759220..759225)) /locus_tag="Alide2_0726" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176107" gene 759717..760718 /locus_tag="Alide2_0727" /db_xref="GeneID:10481748" CDS 759717..760718 /locus_tag="Alide2_0727" /inference="similar to AA sequence:KEGG:Daci_4992" /note="KEGG: dac:Daci_4992 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386659.1" /db_xref="GI:330823356" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481748" /translation="MDKHWGTWGRRSAGLGLVAVAAALLGGAALAQDGYPNPARQLRI VVPFTAGGSSDVQGRMLADRLGRLWGQPVVVENKPGAGGHLGGKYVVDQPADGYTLMV GSIGLHAAYGVYSKLTYNPGKDLRVVTVLAEMPHVVVAAPALPAKNLSELTALAKGQP NSVHFGSAGVGSSVHMMGELYKLQSGAPIVHVPYRGSSAALNDLLGGQIQLMFENPPT VLAHIKGGKLKGLAVTGKGRLAALPDVPTAAESGMKDYVATSWTTVAVSSKVPEAVVK KLSEDIRKVVNTPEFRKGLEEQGMSAVANTLPEADAFVAREKQRWDHVIAEGRISAN" sig_peptide 759717..759812 /locus_tag="Alide2_0727" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 32" misc_feature 759828..760697 /locus_tag="Alide2_0727" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 759888..760706 /locus_tag="Alide2_0727" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 760730..762007 /locus_tag="Alide2_0728" /db_xref="GeneID:10481749" CDS 760730..762007 /locus_tag="Alide2_0728" /inference="similar to AA sequence:KEGG:CtCNB1_3962" /note="KEGG: ctt:CtCNB1_3962 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386660.1" /db_xref="GI:330823357" /db_xref="GeneID:10481749" /translation="MNSASTDPFVPCRRVGDGSWHHFFGYYNKSNWDKGNRLLLAQRT PWMDQYLTPEVKATVGYFDTGDGDRFHAVGETGAWNWQMGSQLQWLDGAPGRQLVYND RTGDIKARYPGFGAVVVDVDSGARRQLPMPVYVVAPSSAWALSVNYRRLYATHETIGY SEPGQPFELPLAPADDGIWRMDMASGDAALLVSYAQLKAFHHRPSMDKAIHWVSHIEV NPSSSRILFLHRWTERVKDETCFLHRLITMNPDGSGMRLLECSDHPLPQLAEDFDPGA VGTFDYEKSEYQISHPLWQDDGHIIVWGPHAGEIHYHLYHDAEGGAVEVVGRGVLVEN GHMTFSPVDKRWMLSDTYPDDRTHERFLFLFDMHTGERRNLGSFYATPELSKENRCDL HPRWSRDGRLVCIDSVHEHQRQMHVLDVSSIVG" gene complement(762015..762275) /locus_tag="Alide2_0729" /db_xref="GeneID:10481750" CDS complement(762015..762275) /locus_tag="Alide2_0729" /inference="protein motif:HAMAP:MF_00075" /note="TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: dia:Dtpsy_0625 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="YP_004386661.1" /db_xref="GI:330823358" /db_xref="InterPro:IPR004368" /db_xref="InterPro:IPR006196" /db_xref="GeneID:10481750" /translation="MSNKEELIEMQGKVDEVLPDARFRVTLDNGHKLVAYSGGKMRKH RIRVLAGDTVSLEMSPYDLSKGRITFRHLPPRAGGAPARHRR" misc_feature complement(762066..762254) /locus_tag="Alide2_0729" /note="S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451" /db_xref="CDD:88417" misc_feature complement(order(762075..762077,762081..762083, 762132..762143,762156..762161,762168..762170, 762204..762206,762222..762230)) /locus_tag="Alide2_0729" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:88417" misc_feature complement(order(762156..762158,762168..762170)) /locus_tag="Alide2_0729" /note="predicted 30S ribosome binding site; other site" /db_xref="CDD:88417" gene complement(762626..763279) /locus_tag="Alide2_0730" /db_xref="GeneID:10481751" CDS complement(762626..763279) /locus_tag="Alide2_0730" /inference="protein motif:PFAM:PF03171" /note="PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: dia:Dtpsy_0631 2OG-Fe(II) oxygenase" /codon_start=1 /transl_table=11 /product="2OG-Fe(II) oxygenase" /protein_id="YP_004386662.1" /db_xref="GI:330823359" /db_xref="GO:0016491" /db_xref="InterPro:IPR005123" /db_xref="GeneID:10481751" /translation="MPDHPIDDLFGDAPAALPLGAQAMLLRGFALAQAEALVQGVRQV ALHAPWRRMQTPGGKAMSVAMTGCGPLSWVSDRQGYRYADRDPLTGLPWPAMPAAFAR LARAAAQQAGFARFAPDACLVNRYEPGARMSLHQDRDERDLGAPIVSVSLGLPAVFLW GGATRGERALRVPLRHGDVVVWGGVDRLRFHGVLPVAPGEHPATGSFRINLTLRKAL" misc_feature complement(762632..763258) /locus_tag="Alide2_0730" /note="2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy; cl01206" /db_xref="CDD:194067" gene 763370..764878 /locus_tag="Alide2_0731" /db_xref="GeneID:10481752" CDS 763370..764878 /locus_tag="Alide2_0731" /EC_number="6.2.1.26" /inference="protein motif:PRIAM:6.2.1.26" /note="KEGG: ajs:Ajs_0653 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="YP_004386663.1" /db_xref="GI:330823360" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10481752" /translation="MNIAQLLQRSALVHGDRPAVLAGARLLHDYRTLAARVAALAGHL RGRCGVQAGERVAIFSANCPEYLEALHAIHWAGAISVPVNYKLHARELAHVLSDSGAR VVCVSGALKGDALAAGADAAALQVLGDAVWQQEAQGAPLPPQERAPGDVASLFYTSGT TGRPKGVMQTHRNLLAMTMAYFTDVDDVRHDDAMVYAAPMSHGAGLYNYAHMLRGARH VVPESGGFDPAELVRLAASVGRLSLFAAPTMVHRLVEHVRSTGADVGGFKTIVYGGGP MYVEDLRRAIDAMGQKFVQIYGQGESPMTITALAREHLADTAHPRWAERIASVGVAHS CVQVRVVDGQDRPVPAGELGEVVVRGETVMAGYWGNAEATAQTLRGGWLHTGDVGQLD EHGFLTLRDRSKDVIISGGSNIYPREVEEVLLLHPRVREAAVVGRRDAEWGEVVVAFL VADGAPVPDAELDALCLEHIARFKRPKAYRWVQALPKNSYGKVLKTELRALL" misc_feature 763370..764869 /locus_tag="Alide2_0731" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature 763376..764875 /locus_tag="Alide2_0731" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 764975..765694 /locus_tag="Alide2_0732" /db_xref="GeneID:10481753" CDS 764975..765694 /locus_tag="Alide2_0732" /inference="protein motif:PFAM:PF00175" /note="PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; KEGG: ctt:CtCNB1_2425 FAD-binding oxidoreductase" /codon_start=1 /transl_table=11 /product="oxidoreductase FAD/NAD(P)-binding domain-containing protein" /protein_id="YP_004386664.1" /db_xref="GI:330823361" /db_xref="GO:0016491" /db_xref="InterPro:IPR001433" /db_xref="InterPro:IPR008333" /db_xref="GeneID:10481753" /translation="MATYTVKLQARQPVAEGTMAFHLEKPAGFEFRPGQAMEVILPGG AEGEEGRHAFSIVSAPHEAELVFATRMRDSAFKRALAALPLGASLDIDGPFGSLILHK KAERAGVLVAGGIGITPFMSMLRNAAEQHSEQSLVLLYSNRRPEDAAFLAELQALAQR HPKFRLVATMTGMARSQQAWDGATGYIDGAFVRRAIEGLPAPIFYVSGPPALVEAMRG TLVDDAGVDEDDVRSEEFYGY" misc_feature 765002..765676 /locus_tag="Alide2_0732" /note="Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron...; Region: FNR_like; cd00322" /db_xref="CDD:99778" misc_feature order(765080..765082,765128..765139,765176..765184, 765197..765205,765317..765319) /locus_tag="Alide2_0732" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99778" misc_feature order(765128..765130,765134..765139) /locus_tag="Alide2_0732" /note="conserved FAD binding motif [chemical binding]; other site" /db_xref="CDD:99778" misc_feature order(765203..765205,765212..765214,765230..765232) /locus_tag="Alide2_0732" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99778" misc_feature order(765302..765304,765314..765325,765329..765331) /locus_tag="Alide2_0732" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99778" misc_feature order(765317..765322,765395..765403,765596..765601) /locus_tag="Alide2_0732" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99778" gene complement(765688..767277) /locus_tag="Alide2_0733" /db_xref="GeneID:10481754" CDS complement(765688..767277) /locus_tag="Alide2_0733" /inference="similar to AA sequence:KEGG:Vapar_3422" /note="KEGG: vap:Vapar_3422 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386665.1" /db_xref="GI:330823362" /db_xref="GeneID:10481754" /translation="MASPHAPFFPIIYVRGYAMTEREQDETTADPFCGFNLGSTVYRA TPDKTKPAKKFVFESPVLRLMSDFGYADVYDNGLDILDGEWEGSLSLRSIVIYRYYEQ ASALLGSGKTPDISQFARGLSDLVLRVRDLACANPDNRLAPEDFRCHLVAHSMGGLVC RAFLQNPDLGDDQARASVDKVFTYATPHNGIDVAGINVPEWLGAADMNNFNRENMARY LKLEALYKKTQRVDWLPEEVFPSERFFCMIGTNRADYGVALGLSRTFAGHGSDGLVRI ENASVWGVNARGKFSAPCATAYTYRSHSGYFGIVNSEEAYQNLTRFLFGDVRVDIWVD IDSVQLPPEIQGKAVNALYQFELLASPRGKRWYLTRRMAEEDSVACRSHQDLVDPAKK DARSIYLSTVFLANRARVNPARPSLAYGMTLGVRVPDYEVDRKFWADTHYEGGYLFRD TVIVEMVPPQTPGDAWTTRFGWQSDNVGHATESLAYRTLKTGKQVMTIAFGNDNAPGI AGRVRFVVSAWNAAADGQEVQ" misc_feature complement(<766612..>766830) /locus_tag="Alide2_0733" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(767289..767897) /locus_tag="Alide2_0734" /db_xref="GeneID:10481755" CDS complement(767289..767897) /locus_tag="Alide2_0734" /inference="protein motif:PFAM:PF02557" /note="PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; Peptidoglycan binding-like; KEGG: pph:Ppha_2260 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin" /codon_start=1 /transl_table=11 /product="peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin" /protein_id="YP_004386666.1" /db_xref="GI:330823363" /db_xref="GO:0008233" /db_xref="InterPro:IPR002477" /db_xref="InterPro:IPR003709" /db_xref="GeneID:10481755" /translation="MRIEEMIAAVQARLGIEVDGKAGPQTWGAIYERLVGKKIDGQAP EQAIAPVDPRSEKVIATLLPQVQPMARALVQKAAASGIAIRVISGLRTYEEQDALYAQ GRTAPGSVVTNARGGYSNHNFGIAFDIGVFEGNRYLGDSPKYKAVGVLGMDLGLEWGG NWKTIVDQPHYQLRPAWAADLSERQMLAEMRARHASGSPVFA" misc_feature complement(<767475..767708) /locus_tag="Alide2_0734" /note="D-alanyl-D-alanine carboxypeptidase; Region: VanY; cl00813" /db_xref="CDD:186202" gene 768068..768739 /locus_tag="Alide2_0735" /db_xref="GeneID:10481756" CDS 768068..768739 /locus_tag="Alide2_0735" /inference="protein motif:PFAM:PF01323" /note="PFAM: DSBA-like thioredoxin domain; KEGG: ajs:Ajs_0654 DsbA oxidoreductase" /codon_start=1 /transl_table=11 /product="DSBA oxidoreductase" /protein_id="YP_004386667.1" /db_xref="GI:330823364" /db_xref="GO:0015035" /db_xref="InterPro:IPR001853" /db_xref="GeneID:10481756" /translation="MTTPAAPITLKIDFVSDVACPWCAIGLAALTQAAARLSGQVLLD WHFQPFELNPGMGPGGEDLLEHLAAKYGAAPEQLRQTQQQIAARGAALGVVFSPRRTR IYNTFDAHRLLHWLGEQGAAGQQLAFKQALFKSYFTDAENPSDPAVLLRLVREAGLDE ARARAVLESGEYADAVREREAFYQERGIHSVPAVIVDGRHLIQGGQPVEVFEQALRRI AAQRV" misc_feature 768080..768727 /locus_tag="Alide2_0735" /note="Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: FrnE; COG2761" /db_xref="CDD:32627" misc_feature 768101..768715 /locus_tag="Alide2_0735" /note="DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins; Region: DsbA_FrnE; cd03024" /db_xref="CDD:48573" misc_feature order(768125..768127,768134..768136) /locus_tag="Alide2_0735" /note="catalytic residues [active]" /db_xref="CDD:48573" gene complement(768811..769293) /locus_tag="Alide2_0736" /db_xref="GeneID:10481757" CDS complement(768811..769293) /locus_tag="Alide2_0736" /inference="protein motif:PFAM:PF05981" /note="PFAM: Uncharacterised protein family CreA; KEGG: dia:Dtpsy_0634 CreA family protein" /codon_start=1 /transl_table=11 /product="CreA family protein" /protein_id="YP_004386668.1" /db_xref="GI:330823365" /db_xref="InterPro:IPR010292" /db_xref="GeneID:10481757" /translation="MRTLRATCMAAAALLAAGTCAAQPDKIGTVDTAFQWIGRDHDIV VEAYDDPLVQGVTCYVSRARTGGIKGTLGLAEDRAEASIACRQVGPIAFAQPLKAQQE VFSERMSLLFKRLRVVRMVDAKRNTLVYLSYSDKLIDGSPQNSVTAVPVDRATPIPLK " sig_peptide complement(769225..769293) /locus_tag="Alide2_0736" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.697 at residue 23" misc_feature complement(768826..769215) /locus_tag="Alide2_0736" /note="CreA protein; Region: CreA; cl01154" /db_xref="CDD:186361" gene complement(769290..771881) /locus_tag="Alide2_0737" /db_xref="GeneID:10481758" CDS complement(769290..771881) /locus_tag="Alide2_0737" /EC_number="6.3.2.29" /inference="protein motif:TFAM:TIGR02068" /note="TIGRFAM: Cyanophycin synthetase; KEGG: dia:Dtpsy_0635 cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal" /codon_start=1 /transl_table=11 /product="cyanophycin synthetase" /protein_id="YP_004386669.1" /db_xref="GI:330823366" /db_xref="GO:0005524" /db_xref="GO:0016874" /db_xref="InterPro:IPR003135" /db_xref="InterPro:IPR004101" /db_xref="InterPro:IPR011810" /db_xref="InterPro:IPR013221" /db_xref="GeneID:10481758" /translation="MQITRIRALRGPNLWTRSTAMEAVVHCEPHEGDYRTLPGFEDRL RARFPKIGALHPHGADQRLSLAHVLEVAALSLQAQAGCPVTFSRTHETVEPGTSQVVV EYTEEAVGRQAMEQAEALVRAALDDTPFDAAAVVARLRELDEDERIGPSTGAIVDAAV ARGIPFRRLTSGSLVQLGWGSQARRIQAAELDVTSAVAESIAQDKDLTKRLLHAAGVP VPLGRPVADVHDAWKVAEEVGLPVVVKPQDGNQGKGVTVNITTRAQLEAAYATALQYG DEVMVERFLPGHDFRLLVVGHQLVAAARREPPQVLGDGVHTIRELVDIVNQDPRRGSG HGTALTKIRLDDIAIARIAAEGLAPESVPAQGQRVVLRNNANLSTGGSATDVTDDVHP EVAARAIEAAQTIGLHICGVDVICESILHPLEEQNGGIVEVNAAPGLRMHLAPSFGRP RNVGVPMVDALFPPGQDGRIPLVAVTGTNGKTTTTRLIAHLFTAHGWRTAMTNTDGVY VNGRQIDSGDCSGPRSARNALAHPEADAAVLECARGGLLREGLGFDRCQVAVVTNVGE GDHLGLNFIHTVEDVAVLKRVIVQNVAQDGYAVLNAADPHVAAMATSCPGKVIFFAAD RHHPVMATHRAQGNRVVYVDEGHIVAAEGSWRESVPLREIPITRGGAIGFQVENAMAA IAATWGLGLPWQTIRRGLAGFVNDSDNAPGRFNVMDYRGATLIADYGHNPDAIRALVQ AVDAIPAKQRSVVISGAGDRRDQDIIEQTRTLGAAFDDVVLYQDACQRGRADGEVLAL LKQGLEGAPRTRYVTEIHGEFVAIDHALERLQPGDLCLVLVDQVEEALAHLRRRCGEA AGTAGAA" misc_feature complement(769731..771881) /locus_tag="Alide2_0737" /note="cyanophycin synthetase; Provisional; Region: PRK14016" /db_xref="CDD:184454" misc_feature complement(<770925..771251) /locus_tag="Alide2_0737" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(770559..>770759) /locus_tag="Alide2_0737" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(769827..770426) /locus_tag="Alide2_0737" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" misc_feature complement(769530..769751) /locus_tag="Alide2_0737" /note="Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875" /db_xref="CDD:190458" gene complement(771953..774133) /locus_tag="Alide2_0738" /db_xref="GeneID:10481759" CDS complement(771953..774133) /locus_tag="Alide2_0738" /EC_number="6.3.2.29" /inference="protein motif:TFAM:TIGR02068" /note="TIGRFAM: Cyanophycin synthetase; KEGG: ctt:CtCNB1_0610 cyanophycin synthetase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding" /codon_start=1 /transl_table=11 /product="cyanophycin synthetase" /protein_id="YP_004386670.1" /db_xref="GI:330823367" /db_xref="GO:0005524" /db_xref="GO:0016874" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR011810" /db_xref="GeneID:10481759" /translation="MATFKDIQLLRATYLRGPSVWTYRPILEVWLDLGELEDYPSNKL PGFNERLTRWLPDLVEHTCGVGERGGFIQRLEGGTWMGHVLEHVVIELLNLSGMPAEF GQTREISRRGVYRMVFRCPEEAVARVALDCGHRLLMAAINDQPFDLKAAIHAIKTAIN DRYLGPSTGCIVDAASERRIPHIRLNDGNLVQLGYGAAQRRIWTAESDQTSAIAEGIA QDKDFTKRLLAACGVPVPEGRIVKNAEEAWEVAQEIGFPVTVKPSDGNHARGVTLELS READIKAAFALAEPEGSDVIVEKFIDGIEHRLLVVGGKVVAATKGETVSVHGNGQATL RELVAVLNQDPRRGPEQEYPLDWINLEAGAVQLELKRQNVTPDSVIPQGQSVLLQRNG NMAIDCTDDVHPDVAYYAQLAAKIVGLDIAGMDMILKDVSQPMQGQGAILEVNAGPGL LMHLKPTSGAPRPVGMAIADHLFPREDGPGAGRIPLVGIVGTRHNAFIARLVGWLLQL SGKLTGVASSEGMFLANRRTQKSDTANWAGAHRLLTNRLAQAAVIQTTARSILEEGLA YDRCLVGVVTDMDGYESLADHDVLEQAKMTRVLRTQIDVVLDEGAGVLNADIAQVAEL SALCDGEVLLYSTAADNPAIAAHRANTENGGEGRAVFVRGEQVILATGAGERALGTLA ALSLAGGQRPDTPALLAAIAAAWSMDIAPDLIAAGIKTFEYPGA" misc_feature complement(771965..774115) /locus_tag="Alide2_0738" /note="cyanophycin synthetase; Provisional; Region: PRK14016" /db_xref="CDD:184454" misc_feature complement(<773219..773476) /locus_tag="Alide2_0738" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene 774383..776695 /locus_tag="Alide2_0739" /db_xref="GeneID:10481760" CDS 774383..776695 /locus_tag="Alide2_0739" /EC_number="3.6.3.44" /inference="protein motif:PRIAM:3.6.3.44" /note="PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: dia:Dtpsy_0637 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Xenobiotic-transporting ATPase" /protein_id="YP_004386671.1" /db_xref="GI:330823368" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481760" /translation="MQHHHSVDALGVLPGPFGAGLRAALASDENVQAAFEVDLTPGLR FAPGLLVLTDRRLLAQGTDAAAQEWPLAPGMALRMLDHGGVGTLELHDADRRLALWRF TLGRHPQALHLQQRLERQLALLENSQAVAAPEEEDTPRCAACGTPLPPDSDECPACAR QQPPRASTWVLLRLWRFARPYRKQLAAGFALTLASTAASLVPPYMTIPLMDDILIPYQ SGQQIPTGMVMLYLGGLLLAALLAWGLGWARTYILALVSERIGADLRTTTYEHLLRLS LDYFGSKRTGDLMARIGSETDRINVFLSLNALDFATDVLMIVMTSVILFSINPWLALV TLVPLPFIAWLIHNVRDRLRTGFEKIDRVWSEVTNVLADTIPGIRVVKAFAQESREAQ RFRAANQHNLEVNDRLNKTWSLFAPTVSLMTEVGLLVVWGFGIWLVARNQITVGVLAA FIAYIGRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSNVPDPANPVRVNKVEGAI EMRDIGFRYGSRTVIRNLSLDIRPGEMIGLVGHSGSGKSTLVNLISRFYDVSDGAILV DGVDIRRMAVSDFRRHIGLVLQEPFLFFGTIAENIAYGRPDATRDEIVAAARAAHAHE FILRLPHGYDSLVGERGQGLSGGERQRISIARALLIDPRILILDEATSAVDTETEKEI QKALDNLVQGRTTIAIAHRLSTLRKADRLVVMDRGEVVEVGPHDELMAQQGAYWRLYE AQARRAEEDAEAAGVRVESTRQHSAHPAGK" misc_feature 774983..776599 /locus_tag="Alide2_0739" /note="ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132" /db_xref="CDD:31327" misc_feature <775127..775750 /locus_tag="Alide2_0739" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature 775904..776599 /locus_tag="Alide2_0739" /note="MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the...; Region: ABC_MTABC3_MDL1_MDL2; cd03249" /db_xref="CDD:73008" misc_feature 776000..776023 /locus_tag="Alide2_0739" /note="Walker A/P-loop; other site" /db_xref="CDD:73008" misc_feature order(776009..776014,776018..776026,776144..776146, 776384..776389,776480..776482) /locus_tag="Alide2_0739" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73008" misc_feature 776135..776146 /locus_tag="Alide2_0739" /note="Q-loop/lid; other site" /db_xref="CDD:73008" misc_feature 776312..776341 /locus_tag="Alide2_0739" /note="ABC transporter signature motif; other site" /db_xref="CDD:73008" misc_feature 776372..776389 /locus_tag="Alide2_0739" /note="Walker B; other site" /db_xref="CDD:73008" misc_feature 776396..776407 /locus_tag="Alide2_0739" /note="D-loop; other site" /db_xref="CDD:73008" misc_feature 776468..776488 /locus_tag="Alide2_0739" /note="H-loop/switch region; other site" /db_xref="CDD:73008" gene 776710..777198 /locus_tag="Alide2_0740" /db_xref="GeneID:10481761" CDS 776710..777198 /locus_tag="Alide2_0740" /inference="protein motif:PFAM:PF08909" /note="PFAM: Domain of unknown function DUF1854; KEGG: dia:Dtpsy_0638 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386672.1" /db_xref="GI:330823369" /db_xref="InterPro:IPR015005" /db_xref="GeneID:10481761" /translation="MNTTTTTPVPLDLWRNPHGRLMLRLAGGTEPVAVTPVRAFPIAA PLEGLSLVGPDGHELAWVPRLDALPAAARALIEEEFAAREFVPTITRIRSVSSFSTPS TWEVDTDRGAAQLVLKGEEDIRRLAGRTKLLIAASDGLQFHVPDVTALDRASRKLLER FL" misc_feature 776806..777195 /locus_tag="Alide2_0740" /note="Domain of unknown function (DUF1854); Region: DUF1854; pfam08909" /db_xref="CDD:149847" gene 777339..777779 /locus_tag="Alide2_0741" /db_xref="GeneID:10481762" CDS 777339..777779 /locus_tag="Alide2_0741" /inference="similar to AA sequence:KEGG:Dtpsy_0639" /note="KEGG: dia:Dtpsy_0639 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386673.1" /db_xref="GI:330823370" /db_xref="GeneID:10481762" /translation="MQLPPVVRSPPQWRPQGADLYSTGASGAAPVRPVNPANPVESMD RLGEGAIVREPTKPTAPDEENRDWTLAEARKEAPKEAEEPPKEPIYKQLLELIQSMWR ASGSAVELAQDINKTTLQERLAQQVQDRQSPTYSDPKVKRTGGL" gene 777903..779957 /locus_tag="Alide2_0742" /db_xref="GeneID:10481763" CDS 777903..779957 /locus_tag="Alide2_0742" /inference="protein motif:TFAM:TIGR00231" /note="TIGRFAM: Small GTP-binding protein; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, C-terminal; KEGG: vap:Vapar_5542 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal" /codon_start=1 /transl_table=11 /product="small GTP-binding protein" /protein_id="YP_004386674.1" /db_xref="GI:330823371" /db_xref="GO:0005525" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR005517" /db_xref="GeneID:10481763" /translation="MTTVSPSPVAHIRTLALVGASAAGKTTLAEALLHASGAIGTVGS VERGSTVSDHDPQEIKTQHSLQSSVMHLAHGGCRIHLVDAPGLPDFIGQSLPALEAVE TCAVVINAATGIEPMARRMMDYAAERRQDRLIVVNKIDAEGVQLAALLVDIQAAFGAE CLPLNLPDAGATRVVDCFFNREGHSDFGSVADAHRALVEQVVDVDGDFVERYLNDGDI DAGELHAPLEQALREGHLIPVCFVSARSGAGVPELLDVITRLLPNPAEGNPPDFFKGE GECAELIHARPDPAAHVLAQVFKISIDPYVGKLAFVRVHQGTITPSSQLFIGDGRKPF KVGHLFLQQGKDHVEVPSAGPGDICTIGKIDELHYDAVLHDAAEDDHIHLRPLPFPVP VHGVAIRPRRRGDEQRLWEIMGRLVAEDPCLRLEHLASTNETVVYGLGELHLRMLLER LQAGYKFEVETRPPRIAYRETIGQGAAAQYRHKKQSGGAGQFGEVHLRVEPLPRGAGF EFVDQVKGGAIPGQFMPAVEKGVREALAEGVIAGYPVQDIRVIVHDGKSHAVDSKEVA FVTAGKKAAQAAIREAAPTVLEPVARLTITVPDGATGAVTGDLSSRRGLVSGTDTPRP GQVAITAQVPMAELLDYQNRLNALTAGQGAYTLALSHYEAVPPQVQQQLAGQYRAKEE QE" misc_feature 777942..778694 /locus_tag="Alide2_0742" /note="Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved...; Region: EF-G_bact; cd04170" /db_xref="CDD:133370" misc_feature 777954..779924 /locus_tag="Alide2_0742" /note="elongation factor G; Reviewed; Region: PRK12740" /db_xref="CDD:183713" misc_feature 777957..777980 /locus_tag="Alide2_0742" /note="G1 box; other site" /db_xref="CDD:133370" misc_feature order(777960..777962,777966..777968,777978..777983, 777990..777992,777999..778004,778104..778109, 778161..778166,778233..778238,778344..778346, 778356..778358) /locus_tag="Alide2_0742" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133370" misc_feature order(777963..777983,778089..778094,778158..778160, 778314..778316,778320..778325,778629..778631, 778635..778637) /locus_tag="Alide2_0742" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133370" misc_feature order(778086..778100,778104..778106) /locus_tag="Alide2_0742" /note="Switch I region; other site" /db_xref="CDD:133370" misc_feature 778089..778091 /locus_tag="Alide2_0742" /note="G2 box; other site" /db_xref="CDD:133370" misc_feature 778149..778160 /locus_tag="Alide2_0742" /note="G3 box; other site" /db_xref="CDD:133370" misc_feature 778155..778211 /locus_tag="Alide2_0742" /note="Switch II region; other site" /db_xref="CDD:133370" misc_feature 778311..778322 /locus_tag="Alide2_0742" /note="G4 box; other site" /db_xref="CDD:133370" misc_feature 778629..778637 /locus_tag="Alide2_0742" /note="G5 box; other site" /db_xref="CDD:133370" misc_feature 778779..779027 /locus_tag="Alide2_0742" /note="EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide...; Region: EFG_mtEFG_II; cd04088" /db_xref="CDD:58095" misc_feature 779304..779597 /locus_tag="Alide2_0742" /note="EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor...; Region: EFG_mtEFG1_IV; cd01434" /db_xref="CDD:58274" misc_feature 779664..779900 /locus_tag="Alide2_0742" /note="EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor...; Region: EFG_mtEFG_C; cd03713" /db_xref="CDD:58065" gene complement(779971..780903) /locus_tag="Alide2_0743" /db_xref="GeneID:10481764" CDS complement(779971..780903) /locus_tag="Alide2_0743" /EC_number="3.1.3.5" /inference="protein motif:PRIAM:3.1.3.5" /note="KEGG: vei:Veis_1630 5-nucleotidase; PFAM: 5-nucleotidase" /codon_start=1 /transl_table=11 /product="5'-nucleotidase" /protein_id="YP_004386675.1" /db_xref="GI:330823372" /db_xref="InterPro:IPR010394" /db_xref="GeneID:10481764" /translation="MALTLDDKLVVAISSRALFDFEEENRIFEHGDDRAYVALQLARL DVPAPPGVAFSLVRKLLAFNGAEHQRVEVVLLSRNDPVSGMRVFRSCQAHGLPSVQRG VFTQGRDPFRYLRPLGAHLFLSANETDVRSALHLGYPAARVLTESVQAGDAHPHEVRI AFDGDAVLFSDEAERVYQSEGLAAFQRHERDKAAQPLPEGPFKPLLAALHRLQQAGSA DMRIRTALVTARSAPAHERAIRTLMDWNITVDEAMFLGGLPKGEFLREFEPDFFFDDQ TGHVDSAARHVPAGHVSSGIANAAAGAVQAAQAP" misc_feature complement(780016..780792) /locus_tag="Alide2_0743" /note="5'-nucleotidase; Region: 5-nucleotidase; pfam06189" /db_xref="CDD:148034" gene complement(780908..782137) /locus_tag="Alide2_0744" /db_xref="GeneID:10481765" CDS complement(780908..782137) /locus_tag="Alide2_0744" /inference="protein motif:TFAM:TIGR02120" /note="KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain" /codon_start=1 /transl_table=11 /product="general secretion pathway protein F" /protein_id="YP_004386676.1" /db_xref="GI:330823373" /db_xref="GO:0008565" /db_xref="InterPro:IPR011850" /db_xref="InterPro:IPR018076" /db_xref="GeneID:10481765" /translation="MPAYSFEALDSQGHLRRGTLDADSPKAARNMLRAQALVPLDVEA LSPDTAPGSAPTLAQRLFTRPVFNATALAIWTRQLAGLVGAGLPLERALTALADEADD ERQRHLVAALRAEVNAGSTFARALAQHPREFSDIYCAVIGAGEGSGGLGQVLESLADD LEARQQLRAKLIGAALYPAIVTLVAIVIVLFLVGYVVPQVASVFAGSKRALPLLTVLM LALSDFVRGYGWAVLSAFILIAAGARAALARPRFREKFDAAWLRLPLVGKLARGYNAA RFAGTLAMLAGAGVPILRALQAAAETLNNRALRADALEALVLVREGAPLASALAQKKR FPGLVAMFARLGEQTGQLPTMLARAASQLGTEVQRRAMQLATILEPLLIVTMGLVVML IVLAVLQPIIELNQFVK" misc_feature complement(780914..782128) /locus_tag="Alide2_0744" /note="general secretion pathway protein F; Region: GspF; TIGR02120" /db_xref="CDD:162711" misc_feature complement(781601..781915) /locus_tag="Alide2_0744" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" misc_feature complement(780938..781306) /locus_tag="Alide2_0744" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene complement(782192..783187) /locus_tag="Alide2_0745" /db_xref="GeneID:10481766" CDS complement(782192..783187) /locus_tag="Alide2_0745" /inference="protein motif:TFAM:TIGR03558" /note="KEGG: ajs:Ajs_0664 luciferase family protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup" /codon_start=1 /transl_table=11 /product="luciferase family oxidoreductase, group 1" /protein_id="YP_004386677.1" /db_xref="GI:330823374" /db_xref="InterPro:IPR016048" /db_xref="InterPro:IPR019949" /db_xref="GeneID:10481766" /translation="MTTQPLLSMLDLVAVREGGTVAQALEIAVRTARHAESLGFTRYW LAEHHNMPGIASSATAVLVGHVAGATRSIRVGSGGIMLPNHAPLVVAEAFGTLAELYP GRIDLGLGRAPGTDGATMRALRRDRVETEADFPRDVAELQQLLAPAQPGQRIVAVPGA GTQVPIWLLGSSLFSAQLAAHMGLPYAFASHFAPRLLQAAIDLYRQLFRPSAVLLQPY VMIGVPVIAAPTDEEAEYLASSTYQRVLGIITGQRGLLRPPVENYLPGLPPAERAAIA DFLAVGVVGGPQTVRAGLRALAQATRADEFMLVSDVFDPELRLRSLEIAAQANNA" misc_feature complement(<782624..783139) /locus_tag="Alide2_0745" /note="Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892" /db_xref="CDD:189181" misc_feature complement(782204..783136) /locus_tag="Alide2_0745" /note="Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]; Region: COG2141" /db_xref="CDD:32324" gene 783376..783903 /locus_tag="Alide2_0746" /db_xref="GeneID:10481767" CDS 783376..783903 /locus_tag="Alide2_0746" /inference="similar to AA sequence:KEGG:Ajs_0665" /note="KEGG: ajs:Ajs_0665 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386678.1" /db_xref="GI:330823375" /db_xref="GeneID:10481767" /translation="MGFFSRLFQPRADGLQAPSDWTRLPDSNASELVLFDEEARKLVA QFDIDAAIVTHQRWLPWLGEVLKGARDEHLRPEAVADDARSELGQWLHGSGREALGHF PAFDMLMRRHHFFHQQAAVLIRHAEAGETLQAEQAYKACQHASRQVVLLLKELQRGLV RGRRPAERRRDKSVV" misc_feature 783514..>783780 /locus_tag="Alide2_0746" /note="diguanylate cyclase; Provisional; Region: PRK09894" /db_xref="CDD:182133" gene complement(783913..785313) /locus_tag="Alide2_0747" /db_xref="GeneID:10481768" CDS complement(783913..785313) /locus_tag="Alide2_0747" /inference="protein motif:TFAM:TIGR02533" /note="TIGRFAM: Type II secretion system GspE; PFAM: Type II secretion system protein E; KEGG: dia:Dtpsy_0645 general secretory pathway protein E; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="general secretory pathway protein E" /protein_id="YP_004386679.1" /db_xref="GI:330823376" /db_xref="GO:0005524" /db_xref="GO:0008565" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013369" /db_xref="GeneID:10481768" /translation="MRHPLPYAFARSSQLLLEDDGQQLVLWHGPQPDACALSEVLRKH AVQQFMPLDAAQLAQRISAAYAQSESSAATVVSEVEEGADLSRMMQELPAVEDLLESA GDAPIIRMLNALLTQAVRDGASDIHIEPYERHSSVRFRVDGTLREVVQPNRALHAALI SRLKIMADLDISEKRLPQDGRISLRLGTRAIDVRVSTLPNAHGERAVLRLLDKSESKL SLESVGMQGGVLARFEQLIAQPHGIILVTGPTGSGKTTTLYAALARLDASRSNIMTVE DPIEYELPGVGQTQVNGKIDLTFAKALRAILRQDPDVIMIGEIRDFETAQIAIQASLT GHLVLATLHTNDAASAITRLTDMGVEPFLLSSSLLGVLAQRLVRKYCGHCHGGDHGAG CEHCGHTGYAGRTGVFELLVVDDAIRTQIHGQAAEADVRAQALAGGMTLMRDDGERLI AAGITSREEVLRVTRD" misc_feature complement(783922..785307) /locus_tag="Alide2_0747" /note="general secretory pathway protein E; Region: type_II_gspE; TIGR02533" /db_xref="CDD:131585" misc_feature complement(784174..784830) /locus_tag="Alide2_0747" /note="PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129" /db_xref="CDD:29995" misc_feature complement(784549..784572) /locus_tag="Alide2_0747" /note="Walker A motif; other site" /db_xref="CDD:29995" misc_feature complement(order(784360..784365,784483..784488, 784492..784494,784549..784557,784567..784569)) /locus_tag="Alide2_0747" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29995" misc_feature complement(784360..784377) /locus_tag="Alide2_0747" /note="Walker B motif; other site" /db_xref="CDD:29995" gene complement(785324..787657) /locus_tag="Alide2_0748" /db_xref="GeneID:10481769" CDS complement(785324..787657) /locus_tag="Alide2_0748" /inference="protein motif:TFAM:TIGR02517" /note="KEGG: dia:Dtpsy_0646 general secretion pathway protein D; TIGRFAM: Type II secretion system GspD; PFAM: Type II/III secretion system; NolW-like" /codon_start=1 /transl_table=11 /product="general secretion pathway protein D" /protein_id="YP_004386680.1" /db_xref="GI:330823377" /db_xref="GO:0008565" /db_xref="InterPro:IPR004846" /db_xref="InterPro:IPR005644" /db_xref="InterPro:IPR013356" /db_xref="GeneID:10481769" /translation="MPSFSRRQLRTALHSIAASALLVCATAQIHAQTTNRTHAGSVRP SEPVTLNFANADIEAVARTMATITGRNVVVDPRVKGQLTLVTENAVTPAAAFQQFLAA LRLQGFTVVESGGLYKVVPEADAKLQTGTVSVSQGGAGGTPAGGQIVTQIFKLNFENA NNLVPVLRPLISPNNTINVNPGNNSLVITDYADNLQRLARIVAAMDVANATDVEVIPL QHAIASDLAPLVSRLIEGSGGTGTAAAPAAAQGQTDTSFKTTLLPEPRSNALIVRAAN PARLALVRSLVARLDQPAAPGSSAASGNIHVVYLKNADAVKLAATLRAALQAGNLGAG AGTSANGNSGTGLGSGLTQTSMAGGTAQSGLGTNTASSSAGGLGAGASTGLNRSGTDN QPSTGGQIQADPTTNSLIISAPEPQYRQLRAVIDKLDGKRAQVLIESLIVEVSANKVA EFGIQWQTAFGNYGNGAVGVIGTNSGVAGGNIIDLAVAAATGNYASLTSSAIGNGMNV AIAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFPTGSYAN TGGNGGAVNPFTTVERKDVGLMLRVRPTINENGTVKLTLYQEVSKVNESTLTNVNGPS TSKRSIESTVLVDDGSVIVLGGLLEDSYSLNQDKVPVMGDLPVLGALFRNENRSRKKT NLMVFLRPMVIRDNATSDALVMDRYEAIRALQQNTQPAPSTVMRAVSDAPVLPPLQGA APGAGAQRAPLAPLVPNPPAPARATPAATSSELYSPQ" sig_peptide complement(787562..787657) /locus_tag="Alide2_0748" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.929) with cleavage site probability 0.929 at residue 32" misc_feature complement(785549..787510) /locus_tag="Alide2_0748" /note="general secretion pathway protein D; Region: type_II_gspD; TIGR02517" /db_xref="CDD:162900" misc_feature complement(786356..>786493) /locus_tag="Alide2_0748" /note="Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958" /db_xref="CDD:146539" misc_feature complement(785576..786082) /locus_tag="Alide2_0748" /note="Bacterial type II and III secretion system protein; Region: Secretin; cl02829" /db_xref="CDD:164025" gene complement(787662..788477) /locus_tag="Alide2_0749" /db_xref="GeneID:10481770" CDS complement(787662..788477) /locus_tag="Alide2_0749" /inference="similar to AA sequence:KEGG:Ajs_0668" /note="KEGG: ajs:Ajs_0668 putative general secretory pathway N transmembrane protein" /codon_start=1 /transl_table=11 /product="putative general secretory pathway N transmembrane protein" /protein_id="YP_004386681.1" /db_xref="GI:330823378" /db_xref="GeneID:10481770" /translation="MSRRPPSRSLTATPRAPWRWAVAGLCLGALPALALWAPARWLAA GVQQASGGQVLLEQARGTVWTGSARLVLTGGAGSDDRAALPGRLAWRLRPAWGGAQAS IMADCCTAEPLALRAALGLGSARVQVADGSSQWPAAVLGGLGTPWNTVQPQGRLQLST QGLALQWSDGRMQLQGQAQLDALGMSTRLSTLRPMGSYRLVLQGGRHGEAPTLQLSTL DGALLLSGSGQWVGQRLRFTGEARAAPEREAALANLLNIIGRRSGARSIITLG" sig_peptide complement(788373..788477) /locus_tag="Alide2_0749" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.982 at residue 35" gene complement(788511..789020) /locus_tag="Alide2_0750" /db_xref="GeneID:10481771" CDS complement(788511..789020) /locus_tag="Alide2_0750" /inference="protein motif:PFAM:PF04612" /note="PFAM: General secretion pathway M protein; KEGG: ajs:Ajs_0669 hypothetical protein" /codon_start=1 /transl_table=11 /product="general secretion pathway M protein" /protein_id="YP_004386682.1" /db_xref="GI:330823379" /db_xref="InterPro:IPR007690" /db_xref="GeneID:10481771" /translation="MSTSRPRALAAALRTHWTGLAAREQTLVLVAAAMLGLALLWWLL LAPALAQLRASPARHAALDAELQRMQTLQAEALRLRDMPRVQGGEALRALQGALARQL GPAAQMHVAGDRATVTLKGVPPEALAQWLAQVRSTARAVPVEARLVRSGADAPRWDGT LVLALPSPG" sig_peptide complement(788868..789020) /locus_tag="Alide2_0750" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.823) with cleavage site probability 0.759 at residue 51" misc_feature complement(788562..788990) /locus_tag="Alide2_0750" /note="General secretion pathway, M protein; Region: GspM; cl01222" /db_xref="CDD:186390" gene complement(789017..790249) /locus_tag="Alide2_0751" /db_xref="GeneID:10481772" CDS complement(789017..790249) /locus_tag="Alide2_0751" /inference="protein motif:PFAM:PF05134" /note="PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L" /codon_start=1 /transl_table=11 /product="general secretion pathway L" /protein_id="YP_004386683.1" /db_xref="GI:330823380" /db_xref="GO:0008565" /db_xref="InterPro:IPR007812" /db_xref="GeneID:10481772" /translation="MSTLVLTLPPGPQAPAAEYSYALTADGHNAIRQACTSAALLPDP GRTGEVVAVVPARALSWQRVTLPQGALAQASRLRAILEGLLEEHLLEEPARLHFALQP GAQSGSPVWVAVCDRAWLHEALQALEAAGRPVDRVVPEFAPGPTASGQQECEVIGAPE DTQIVLTGHGPEQAVAVLPLSAAPALAAMAPAAEDAPPVRAEPAVAALAEHLLGRPVQ IHTASQRALAAARGDWDLAQFDLASSGRTRALRRLGAAANAFARAPQWRAARWGLGLA VAVQLIGLNLWAWQDRQALAAKQAGVRGILTQTFPRIQAVVDAPVQMERELALLRQAA GSMAQRDLEPLMAAAGAALPAARLPGQIEYAGGELLLRGVELPPEELAAANQRLAADG YAARSQDGALLLRPQERP" misc_feature complement(<789830..790240) /locus_tag="Alide2_0751" /note="GspL cytoplasmic actin-ATPase-like region; Region: GspL; pfam05134" /db_xref="CDD:191202" misc_feature complement(<789212..789433) /locus_tag="Alide2_0751" /note="GspL periplasmic domain; Region: GspL_C; cl14909" /db_xref="CDD:196870" gene complement(790317..791294) /locus_tag="Alide2_0752" /db_xref="GeneID:10481773" CDS complement(790317..791294) /locus_tag="Alide2_0752" /inference="similar to AA sequence:KEGG:Ajs_0671" /note="KEGG: ajs:Ajs_0671 general secretion pathway protein K" /codon_start=1 /transl_table=11 /product="general secretion pathway protein K" /protein_id="YP_004386684.1" /db_xref="GI:330823381" /db_xref="InterPro:IPR005628" /db_xref="GeneID:10481773" /translation="MRRAARQAGAALLAAMLTVTLVATFAATALWQQWRAIEVESAER ARIQSAWILIGALDWSRLILREDSLARGGDGTDNLSEPWAVPLEEARLSTFLAASNNV AQVEDASTDTANAFLSGQITDQQGLLNLRNLAGDRQVDATALRQFARLFDYLGLPRGQ LDLLARQMLRAQVQGGDAGTAPLLPQSVSQLGWWGLPQQSVAALAPYVTLLPARTTVN LNTASAVVLWASADGLDMADAQRLVQARESRHFRSEADAAKLVGKTGAIGSATHTVSS SYFEVRGRLRLDSTVVEERSLVFKQRGEARTLWRERGGLASAAAATAGR" sig_peptide complement(791214..791294) /locus_tag="Alide2_0752" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.563 at residue 27" misc_feature complement(790371..791201) /locus_tag="Alide2_0752" /note="General secretion pathway protein K; Region: GspK; pfam03934" /db_xref="CDD:146520" gene complement(791291..791980) /locus_tag="Alide2_0753" /db_xref="GeneID:10481774" CDS complement(791291..791980) /locus_tag="Alide2_0753" /inference="similar to AA sequence:KEGG:Ajs_0672" /note="KEGG: ajs:Ajs_0672 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386685.1" /db_xref="GI:330823382" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10481774" /translation="MRHPPKRLRGFTLVELLVAIAVMALLAIVSWRGLDGMVRSQQQT REHADAVLILQTVMDQWGADLDALQAVEHTEPIAWDGQVLRLTRRGMRQPDEGAVVVA WALRNVDGAAHWLRWQSAPVRTRAEWSDAWDRAARWARTPDEAERRQEAVLMPLAGWQ LFFYRGGAWANALSTNTAGSLPQSPGGLNSAAASIPEGVRLQLTLPPGGALAGVITRD WASPVLGGGKS" gene complement(791982..792347) /locus_tag="Alide2_0754" /db_xref="GeneID:10481775" CDS complement(791982..792347) /locus_tag="Alide2_0754" /inference="protein motif:TFAM:TIGR01707" /note="KEGG: dia:Dtpsy_0652 general secretion pathway protein I; TIGRFAM: General secretion pathway protein I; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein I/J; Prepilin-type cleavage/methylation, N-terminal" /codon_start=1 /transl_table=11 /product="general secretion pathway protein I" /protein_id="YP_004386686.1" /db_xref="GI:330823383" /db_xref="GO:0008565" /db_xref="InterPro:IPR003413" /db_xref="InterPro:IPR010052" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10481775" /translation="MNMRARHAGFTLVEVLVALAIVAIALMAGLQATSALTRNAARQT DVVLAHLCAENELVKVRLSRQMPSIGNARVACEQARRGYEVAVTVSPTPNPQFRRVDA QVFDAQLPVLRLSTIVGRY" sig_peptide complement(792249..792347) /locus_tag="Alide2_0754" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.953) with cleavage site probability 0.543 at residue 33" misc_feature complement(791988..792224) /locus_tag="Alide2_0754" /note="Bacterial type II secretion system protein I/J; Region: GSPII_IJ; pfam02501" /db_xref="CDD:145570" gene complement(792616..793080) /locus_tag="Alide2_0755" /db_xref="GeneID:10481776" CDS complement(792616..793080) /locus_tag="Alide2_0755" /inference="protein motif:TFAM:TIGR01708" /note="KEGG: dia:Dtpsy_0653 general secretion pathway protein H; manually curated; TIGRFAM: Bacterial general secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal" /codon_start=1 /transl_table=11 /product="general secretion pathway protein H" /protein_id="YP_004386687.1" /db_xref="GI:330823384" /db_xref="GO:0008565" /db_xref="InterPro:IPR002416" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10481776" /translation="MPGHGRRPPGRGSRATAQGGFTLLELLVVIAIMALATAGVGLAL RDSGATQLQREGERLAVLLESARAQSRASGAAVRWRADAQGFHFEGLPAAARLPGHWL DGGTSVRGPGELWLGPEPLIGAQQVVIVNQAHPGRAVRVATDGLRPFAAQAL" misc_feature complement(<792817..793032) /locus_tag="Alide2_0755" /note="general secretion pathway protein H; Region: typeII_sec_gspH; TIGR01708" /db_xref="CDD:130769" gene complement(793153..793560) /locus_tag="Alide2_0756" /db_xref="GeneID:10481777" CDS complement(793153..793560) /locus_tag="Alide2_0756" /inference="protein motif:TFAM:TIGR01710" /note="KEGG: aav:Aave_0925 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal" /codon_start=1 /transl_table=11 /product="general secretion pathway protein G" /protein_id="YP_004386688.1" /db_xref="GI:330823385" /db_xref="GO:0008565" /db_xref="InterPro:IPR010054" /db_xref="InterPro:IPR012902" /db_xref="InterPro:IPR013545" /db_xref="GeneID:10481777" /translation="MAAGFTLIELMVVLVIIGVLAALIVPNVLDRADDARVTAARTDI ANLSQALKLYRLDNQRYPTAEQGLQALIARPATAPVPNNWRPYLEKLPNDPWGHPYQY LNPGIKGEVDVMSFGADGQSGGEGKNADIGSWQ" misc_feature complement(793159..793431) /locus_tag="Alide2_0756" /note="Bacterial type II secretion system protein G; Region: GSPII_G; pfam08334" /db_xref="CDD:192005" gene 793661..794107 /locus_tag="Alide2_0757" /db_xref="GeneID:10481778" CDS 793661..794107 /locus_tag="Alide2_0757" /inference="similar to AA sequence:KEGG:Dtpsy_0655" /note="KEGG: dia:Dtpsy_0655 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386689.1" /db_xref="GI:330823386" /db_xref="GeneID:10481778" /translation="MATPSYHRWAPRLATLALWVLAGASAVYWGLQLSGRVAGPAPAA AAPEPVAADAQALARLLGAQAASAPEAPAAASRFVLLGLLAGTASGDGAALIAVDGKP ARPYRVGASVEPGLVLQSLSRREARLGASVEGATTLTLEMPRPKGE" sig_peptide 793661..793753 /locus_tag="Alide2_0757" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.609) with cleavage site probability 0.263 at residue 31" gene complement(794108..794674) /locus_tag="Alide2_0758" /db_xref="GeneID:10481779" CDS complement(794108..794674) /locus_tag="Alide2_0758" /inference="protein motif:PFAM:PF00300" /note="KEGG: dia:Dtpsy_0656 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase" /protein_id="YP_004386690.1" /db_xref="GI:330823387" /db_xref="InterPro:IPR013078" /db_xref="GeneID:10481779" /translation="MSTLWLVRHARPLAAPGLCYGRLDVPADTQASRAAAQALARALP PKVTAVHHSPLQRCELLALELRALRADLASNPDPRILEMDFGGWEGRAWNALPQADIA AWAADLGSHAPGGGEPLAAMLARVAQALRDAAASALPQGGDVVWITHAGVARCVQWLQ AHGAARAPQSHEWPEAAPGFGSWVQVAL" misc_feature complement(794123..794665) /locus_tag="Alide2_0758" /note="Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP; cl11399" /db_xref="CDD:196215" gene complement(794671..795489) /locus_tag="Alide2_0759" /db_xref="GeneID:10481780" CDS complement(794671..795489) /locus_tag="Alide2_0759" /inference="protein motif:PFAM:PF02654" /note="PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; KEGG: dia:Dtpsy_0657 cobalamin-5-phosphate synthase CobS" /codon_start=1 /transl_table=11 /product="cobalamin-5-phosphate synthase CobS" /protein_id="YP_004386691.1" /db_xref="GI:330823388" /db_xref="GO:0008818" /db_xref="InterPro:IPR003805" /db_xref="GeneID:10481780" /translation="MQALRHYLLAVQFFTRLPVTGRLAAWVGYSPAMLRASSAHFPGV GWLVAAVAIAIYAALWQALGGPQGGSQGFVPLVAAVGSTIATVLVTGGFHEDGLADVA DGLGGAYRRERALEIMKDSRIGAFGAMALVLALAAKLALLAHLGSLGLTCVLAALAGG HVLSRLWPLAVVRALPHVGDTATSKSKPLADQITGAALAAAALWCFLPLALVWQALGA HVLIAAVLASALGAAWMLWRFARRLQGFTGDCLGATQQVAEIGFYLGAAIALAR" misc_feature complement(794677..795489) /locus_tag="Alide2_0759" /note="Cobalamin-5-phosphate synthase; Region: CobS; cl00415" /db_xref="CDD:185982" gene complement(795552..797117) /locus_tag="Alide2_0760" /db_xref="GeneID:10481781" CDS complement(795552..797117) /locus_tag="Alide2_0760" /inference="protein motif:TFAM:TIGR01124" /note="KEGG: dia:Dtpsy_0658 threonine dehydratase; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal" /codon_start=1 /transl_table=11 /product="threonine dehydratase, biosynthetic" /protein_id="YP_004386692.1" /db_xref="GI:330823389" /db_xref="GO:0004794" /db_xref="InterPro:IPR001721" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR005787" /db_xref="GeneID:10481781" /translation="MTQPLTPFDYLTRILTARVYDVALESDLQPARALSRRMHNKVLL KREDQQPVFSFKLRGAYNKMAQLSPEQLARGVICASAGNHAQGVAMSASKLGTRAVIV MPTTTPQVKIDAVKTLGGEVVLSGDSYSDAYEHAVRLQQEEGLTFVHPFDDPDVIAGQ GTIAMEMLRQLQALGSHRLDAVFVPIGGGGLIAGVANYIKAVSPQTKVIGVQMNDSDA MARSAREHARVQLPDVGLFADGTAVKLVGEETFRVAHALVDDYVIVDTDAVCAAIKDV FVDTRSIVEPSGALGVAAIKQYVARHKTKGETYATILSGANMNFDRLRFVAERADVGE EREALFAVTIPEERGSFKRFCQVVGALPGGPRNVTEFNYRISHETRAHVFVGLSTHGR GESEKIAKNFLKHGFESLDLTHDELAKEHLRHLVGGRSALARDERLMRFTFPERPGAL FKFLSLMQPTWNISLFHYRNQGADYGRILVGMQVPAEDAAAFDAFLQQLDYPYVEETQ NPAYRLFLQANGS" misc_feature complement(795567..797102) /locus_tag="Alide2_0760" /note="threonine dehydratase; Reviewed; Region: PRK09224" /db_xref="CDD:181709" misc_feature complement(796161..797087) /locus_tag="Alide2_0760" /note="Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562" /db_xref="CDD:107205" misc_feature complement(order(796161..796172,796269..796277, 796287..796289,796296..796301,796308..796310, 796515..796520,796971..796976,797061..797066, 797073..797075,797082..797087)) /locus_tag="Alide2_0760" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:107205" misc_feature complement(order(796176..796178,796545..796559, 796869..796871,796950..796952)) /locus_tag="Alide2_0760" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107205" misc_feature complement(796950..796952) /locus_tag="Alide2_0760" /note="catalytic residue [active]" /db_xref="CDD:107205" misc_feature complement(795843..796109) /locus_tag="Alide2_0760" /note="First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_1; cd04906" /db_xref="CDD:153178" misc_feature complement(796056..796073) /locus_tag="Alide2_0760" /note="putative Ile/Val binding site [chemical binding]; other site" /db_xref="CDD:153178" misc_feature complement(795570..795812) /locus_tag="Alide2_0760" /note="Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_2; cd04907" /db_xref="CDD:153179" misc_feature complement(795759..795776) /locus_tag="Alide2_0760" /note="putative Ile/Val binding site [chemical binding]; other site" /db_xref="CDD:153179" gene 797399..797848 /locus_tag="Alide2_0761" /db_xref="GeneID:10481782" CDS 797399..797848 /locus_tag="Alide2_0761" /inference="protein motif:PFAM:PF02566" /note="PFAM: Peroxiredoxin, OsmC-like protein; KEGG: dia:Dtpsy_0659 OsmC family protein" /codon_start=1 /transl_table=11 /product="OsmC family protein" /protein_id="YP_004386693.1" /db_xref="GI:330823390" /db_xref="InterPro:IPR003718" /db_xref="GeneID:10481782" /translation="MECTVSWTGNAGTRSGMGFIAETGSGHVLAMDGAPDASRPENGG QNLAPRPMETVLAGTGGCTAYDVVLILKRGRHDVRGCSVRLTSERADTDPKVFTRIHM QFTVTGCGIPAAAVERAIAMSHEKYCSASIMLGKTAQITTGFEIVEA" misc_feature 797399..797845 /locus_tag="Alide2_0761" /note="OsmC-like protein; Region: OsmC; cl00767" /db_xref="CDD:193933" gene complement(797859..798476) /locus_tag="Alide2_0762" /db_xref="GeneID:10481783" CDS complement(797859..798476) /locus_tag="Alide2_0762" /inference="similar to AA sequence:KEGG:Dtpsy_0660" /note="KEGG: dia:Dtpsy_0660 putative ubiquinone biosynthesis protein" /codon_start=1 /transl_table=11 /product="putative ubiquinone biosynthesis protein" /protein_id="YP_004386694.1" /db_xref="GI:330823391" /db_xref="GeneID:10481783" /translation="MDRFLIAADSALRTLRATPPAGAASPAAAVPAAELSAPQKRLSG ALMRVNHVGEVCAQALYMAQSCVTDDAALRSELLAAAREEADHLAWTRERLDQLGSRP SLLNPLWFAGAFAIGLAAARIGDRVSLGFVVETERQVSEHLQGHLGRLPDEDLPSRAI VARMQQDEERHAAQAQAAGAAPLPPPARWLMRAAAKVMTATAHYI" misc_feature complement(<797964..798350) /locus_tag="Alide2_0762" /note="Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cl00264" /db_xref="CDD:193737" misc_feature complement(order(797964..797966,797973..797975, 798069..798071,798216..798218,798225..798227, 798315..798317)) /locus_tag="Alide2_0762" /note="dinuclear metal binding motif [ion binding]; other site" /db_xref="CDD:153097" gene 798705..799745 /locus_tag="Alide2_0763" /db_xref="GeneID:10481784" CDS 798705..799745 /locus_tag="Alide2_0763" /inference="similar to AA sequence:KEGG:Aave_0932" /note="KEGG: aav:Aave_0932 porin" /codon_start=1 /transl_table=11 /product="porin" /protein_id="YP_004386695.1" /db_xref="GI:330823392" /db_xref="GeneID:10481784" /translation="MKKSLIALAVLAASGAAMAQSSVTLFGIIDTNFGYVDNTNAAGD SKYGIGTSGNATSRLGFRGVEDLGGGLKAGFWLEGEIFGDNGNASGFNFQRESTVRLS GNFGEVRLGRELVPTYRKVSSYDVFGQVGIGMFQGWSNWAGVGTADANGYRQSNIVSY YTPNFSGFTAGAGYGFDEQATGKEGRYAGAFGAYDNGPLSVALSFDRRNVGALGAGTK DNLTVGGSYDLSVVKINALLQQAKYKDVGAASGKYNSYGLGLTAPVGAGEIKAQYVMY DQKAIDSKAHQFALGYVHNLSKRTALYGTVAYLKNKDASNMALQAKQVSTTGPGAGEN QTGVQLGIRHSF" sig_peptide 798705..798764 /locus_tag="Alide2_0763" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 at residue 20" misc_feature 798771..799742 /locus_tag="Alide2_0763" /note="Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface...; Region: gram_neg_porins; cd00342" /db_xref="CDD:30071" misc_feature order(798771..798773,798789..798791,798795..798803, 798891..798905,798921..798923,798927..798935, 798939..798941,798945..798956,798984..798989, 798993..799007,799032..799040,799161..799163, 799167..799172,799590..799595,799602..799604, 799728..799730,799734..799736,799740..799742) /locus_tag="Alide2_0763" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:30071" misc_feature order(798786..798788,798876..798878,798987..798989, 799077..799079,799161..799163) /locus_tag="Alide2_0763" /note="eyelet of channel; other site" /db_xref="CDD:30071" gene 799967..801178 /locus_tag="Alide2_0764" /db_xref="GeneID:10481785" CDS 799967..801178 /locus_tag="Alide2_0764" /inference="protein motif:PFAM:PF00267" /note="PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type" /codon_start=1 /transl_table=11 /product="porin" /protein_id="YP_004386696.1" /db_xref="GI:330823393" /db_xref="GO:0005215" /db_xref="InterPro:IPR001702" /db_xref="GeneID:10481785" /translation="MRLFTKKSIAFAALALCGSGASLAQSAGTSKVELWGIVDVAVRH TNKEGPTQAGLTKMIGGGMSQSRWGINVEEDLGGGSKALVVLENRFDADSGTPAVNAP YFQLAHVGLQGPYGRLTAGRQWNVLFDVVTSTYASFPYSPYMEAYKPELGMAMGARTS NMLKYMFATPDRRWVGALQYSFDENNTATGNPGFPGSAAQIPAYVAGTLNGGAWKTAG GYLRFSAAGAALGGGYLRTTLPGGTDVDAWTLGGSYRTGPWYLTAGYGLNKAKFAAVT SPLVALRNGVDGAILGQFWSGQTNGGFQPGDANKRQLFKVGVGYQMTTQLNLGAHYFR GKQSGSTTGLSNGNADFLVAVADYAFSKRTDAYFGVDHTRISGGNAIVLDSASNARNR TGFTVGLRHRF" sig_peptide 799967..800041 /locus_tag="Alide2_0764" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.878 at residue 25" misc_feature 800054..801175 /locus_tag="Alide2_0764" /note="Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface...; Region: gram_neg_porins; cd00342" /db_xref="CDD:30071" misc_feature order(800054..800056,800060..800062,800078..800080, 800084..800092,800180..800194,800210..800212, 800216..800224,800228..800230,800234..800245, 800279..800281,800285..800299,800324..800332, 800438..800440,800444..800449,801044..801049, 801056..801058,801161..801163,801167..801169, 801173..801175) /locus_tag="Alide2_0764" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:30071" misc_feature order(800075..800077,800165..800167,800279..800281, 800372..800374,800438..800440) /locus_tag="Alide2_0764" /note="eyelet of channel; other site" /db_xref="CDD:30071" gene 801427..802410 /locus_tag="Alide2_0765" /db_xref="GeneID:10481786" CDS 801427..802410 /locus_tag="Alide2_0765" /inference="protein motif:PFAM:PF00528" /note="PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0664 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386697.1" /db_xref="GI:330823394" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10481786" /translation="MLAFILRRLVQALIVMITVAFIAFMLFQFVGDPVAILLGQDATP QQVAEMRAALGLDKPFVVQFWHFLVNAAQGEFGISLRQGAKVSRLIAERFPATLELSL VAAFIALVVGVPMGVYAALRRGTFMSQLFMTLSLLGVSLPTFLIGILLILVFSVTLGW FPSFGRGEVVQLGWWSTGLLTAKGWHHITLPAITLAIFQLTLIMRLVRAEMLEVLRTD YIKFARARGLTDRAIHFGHALKNTLVPVMTITGLQLGGLIAFAIITETVFQWPGMGLL FIQAVTFADIPVMAAYLCLIALIFVVINLVVDLLYFAVDPRLRVGGKAGGH" misc_feature 801427..802392 /locus_tag="Alide2_0765" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" misc_feature 801706..802332 /locus_tag="Alide2_0765" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(801754..801759,801766..801771,801784..801786, 801817..801828,801832..801861,801868..801873, 801877..801879,802018..802023,802027..802029, 802033..802035,802042..802047,802051..802053, 802063..802068,802075..802077,802126..802128, 802168..802173,802180..802182,802201..802212, 802219..802224,802249..802254,802282..802287, 802294..802299,802303..802308,802315..802320, 802327..802332) /locus_tag="Alide2_0765" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(801835..801879,802201..802218) /locus_tag="Alide2_0765" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(801877..801879,802003..802005,802219..802221, 802243..802245,802252..802254,802282..802284) /locus_tag="Alide2_0765" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(802078..802116,802132..802137,802147..802149) /locus_tag="Alide2_0765" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 802412..803632 /locus_tag="Alide2_0766" /db_xref="GeneID:10481787" CDS 802412..803632 /locus_tag="Alide2_0766" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: dia:Dtpsy_0665 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004386698.1" /db_xref="GI:330823395" /db_xref="GO:0016787" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="GeneID:10481787" /translation="MQPMKFKVGGRAFAQIAEFHPELTAFRRDLHAHPELGFEEVYTS ARVREALRAAGVDEVHEGIGRTGVVGVIRGQGRGSGSMIGLRADMDALPMTEHNDFAW KSCKSGLMHGCGHDGHTAMLVGAARYLAGTRRFDGTAVLIFQPGEEGLGGARVMIEDG LFERFPVQAVYAMHNWPAMKPGTVGINDGAMMAAADRITIEITGRGGHGAHPYQTVDV VLVAGHIITAVQGIVSRNVRALDSAVISLCAVQAGDLGAFSVLPGQATLVGTVRAFDP AVQDMVAQRIKDLCNAIALGFGATVTVRYERIYPATINTAGEARFAGDVAAALVGEDN VDRDLEPSMGAEDFSFMLQARPGAYLRLGQGMGAGNSTLHNSRYDFNDDVLPLGAALH AGLVEQAMLLADGQ" misc_feature 802451..803608 /locus_tag="Alide2_0766" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature 802472..803605 /locus_tag="Alide2_0766" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature order(802748..802750,802754..802756,802853..802855, 802931..802933,803531..803533) /locus_tag="Alide2_0766" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature order(803000..803002,803066..803071,803081..803083, 803090..803092,803099..803101,803150..803170, 803186..803191,803195..803197,803213..803221) /locus_tag="Alide2_0766" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene 803710..804621 /locus_tag="Alide2_0767" /db_xref="GeneID:10481788" CDS 803710..804621 /locus_tag="Alide2_0767" /inference="protein motif:PFAM:PF00528" /note="PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0667 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386699.1" /db_xref="GI:330823396" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10481788" /translation="MQKTLLRWYDSDVAHSFRSSPVAILAALIALVCTFCALFAGWVA PHNPFDLSTLVLSDSRLPPVWMAEGSWKYVLGTDDQGRDILSALIYGARISLVVGLAS VLLSVVLGVALGLVAGFRGGWVDGVLMRLCDVMLSFPAILIALLIAGVARAVFPDAPE SLAFGVLILAISLTGWVQYARTVRGSTLVERNKEYVQAARVTGVAPMRIMRKHVLPNV LGPVMVLATIQVATAIITEATLSFLGVGAPPTSPSLGTLIRIGNDYLFSGEWWITIFP GVMLVLIALSVNLLGDWLRDALNPRLR" sig_peptide 803710..803832 /locus_tag="Alide2_0767" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.698) with cleavage site probability 0.695 at residue 41" misc_feature 803803..804603 /locus_tag="Alide2_0767" /note="nickel ABC transporter, permease subunit NikC; Region: nickel_nikC; TIGR02790" /db_xref="CDD:131837" misc_feature 804064..804564 /locus_tag="Alide2_0767" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(804091..804102,804106..804135,804142..804147, 804151..804153,804229..804234,804238..804240, 804244..804246,804253..804258,804262..804264, 804274..804279,804286..804288,804337..804339, 804379..804384,804391..804393,804412..804423, 804430..804435,804481..804486,804514..804519, 804526..804531,804535..804540,804547..804552, 804559..804564) /locus_tag="Alide2_0767" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(804109..804153,804412..804429) /locus_tag="Alide2_0767" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(804151..804153,804214..804216,804430..804432, 804475..804477,804484..804486,804514..804516) /locus_tag="Alide2_0767" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(804289..804327,804343..804348,804358..804360) /locus_tag="Alide2_0767" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 804628..805602 /locus_tag="Alide2_0768" /db_xref="GeneID:10481789" CDS 804628..805602 /locus_tag="Alide2_0768" /EC_number="3.6.3.24" /inference="protein motif:TFAM:TIGR01727" /note="SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0668 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter ATPase" /protein_id="YP_004386700.1" /db_xref="GI:330823397" /db_xref="GO:0005524" /db_xref="GO:0015197" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="GeneID:10481789" /translation="MSLLEVQNLVVEFPTRRGTLRALDDVSFSIAPGEILGVVGESGA GKSLTGASIIGLLEPPGRVASGQIRLEGQRIDNLPHAQMRHIRGRKIGAIFQDPLTSL NPLYTVGQQLVETILTHLPMSAAQARQRAVDLLKDTGIPAAEQRIDHYPHQFSGGMRQ RVVIALALAAEPQLIVADEPTTALDVSIQAQIIQLLKSICKTRGAAVMLITHDMGVIA ETCDRVAVMYAGRVAEIGPVHEVINRPAHPYTAGLMASIPDMEQDRERLNQIDGAMPR LNAIPNGCAFNPRCPQVFDRCRAERPDLMPAGATQAACWLHAVEKEVA" misc_feature 804634..805575 /locus_tag="Alide2_0768" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444" /db_xref="CDD:30793" misc_feature 804634..805335 /locus_tag="Alide2_0768" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 804745..804768 /locus_tag="Alide2_0768" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(804754..804759,804763..804771,804913..804915, 805159..805164,805261..805263) /locus_tag="Alide2_0768" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 804904..804915 /locus_tag="Alide2_0768" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 805087..805116 /locus_tag="Alide2_0768" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 805147..805164 /locus_tag="Alide2_0768" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 805171..805182 /locus_tag="Alide2_0768" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 805249..805269 /locus_tag="Alide2_0768" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature 805318..805575 /locus_tag="Alide2_0768" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene 805599..806615 /locus_tag="Alide2_0769" /db_xref="GeneID:10481790" CDS 805599..806615 /locus_tag="Alide2_0769" /EC_number="3.6.3.24" /inference="protein motif:TFAM:TIGR01727" /note="SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0669 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter ATPase" /protein_id="YP_004386701.1" /db_xref="GI:330823398" /db_xref="GO:0005524" /db_xref="GO:0015197" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="GeneID:10481790" /translation="MNPAPNPLVRAHDLARTFDVSAPWLNRVIERKPRQLLHAVDGVS FEIEKGKTLALVGESGCGKSTVARLLVGLYEPTRGGFSFDGQDAHAAFKGKGARAMRR RIQMIFQDPYASLNPRWLVQDIIGEPLREHGLVTQAAALKTRVGELLTSVGLAPQDMA KYPHQFSGGQRQRISIARALATEPEFLVCDEPTSALDVSVQAQVLNIMKDLQQKQGLT YLFISHNLAVVRHVSDQVGVMYLGRLVELADKQQLFSQPRHPYTRMLLDAIPKMHDTG RARTPVQGEVPNPLDPPPGCAFNPRCPFANARCRSERPQLLQGEGGARVACHAVEEGR IGRA" misc_feature 805617..806594 /locus_tag="Alide2_0769" /note="dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308" /db_xref="CDD:183084" misc_feature 805620..806342 /locus_tag="Alide2_0769" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 805767..805790 /locus_tag="Alide2_0769" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(805776..805781,805785..805793,805923..805925, 806166..806171,806268..806270) /locus_tag="Alide2_0769" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 805914..805925 /locus_tag="Alide2_0769" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 806094..806123 /locus_tag="Alide2_0769" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 806154..806171 /locus_tag="Alide2_0769" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 806178..806189 /locus_tag="Alide2_0769" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 806256..806276 /locus_tag="Alide2_0769" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature 806325..806585 /locus_tag="Alide2_0769" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene 806658..807152 /locus_tag="Alide2_0770" /db_xref="GeneID:10481791" CDS 806658..807152 /locus_tag="Alide2_0770" /inference="protein motif:TFAM:TIGR00481" /note="KEGG: dia:Dtpsy_0671 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP" /codon_start=1 /transl_table=11 /product="YbhB YbcL family protein" /protein_id="YP_004386702.1" /db_xref="GI:330823399" /db_xref="InterPro:IPR005247" /db_xref="InterPro:IPR008914" /db_xref="GeneID:10481791" /translation="MTAFTLTSPDIAAGSTIAQVFEFDGFGCSGKNQSPVLRWSGAPE GTKSFAVNVYDPDAPTGSGFWHWYVIDIPADVTELPADAGAKGGANLPKGARQIRNDY GIYAWGGVCPPPGDKPHRYIFTVHALSVERIEVPDDAPAALTGFMVNANTIAKASFTA TYGR" misc_feature 806670..807143 /locus_tag="Alide2_0770" /note="PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea; Region: PEBP_bact_arch; cd00865" /db_xref="CDD:176643" misc_feature order(806820..806825,806847..806849,806853..806855, 806982..806996,807006..807008,807012..807014, 807018..807020) /locus_tag="Alide2_0770" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176643" gene complement(807204..808049) /locus_tag="Alide2_0771" /db_xref="GeneID:10481792" CDS complement(807204..808049) /locus_tag="Alide2_0771" /inference="protein motif:PFAM:PF01418" /note="PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: ajs:Ajs_0694 RpiR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="RpiR family transcriptional regulator" /protein_id="YP_004386703.1" /db_xref="GI:330823400" /db_xref="GO:0003700" /db_xref="GO:0005529" /db_xref="InterPro:IPR000281" /db_xref="InterPro:IPR001347" /db_xref="GeneID:10481792" /translation="MLDRITASLPSLAPAEQRVARLVLKDPRAFAHLPVRELAERAHV SKPTVVRFCRSMGYDGLADFKLKLAGSVSEGVPFIHRSVDADDKTGDVLVKVVDNAMA AFLQYRNAASTQLLERAAEAIAGTWQTGRRIEFYGAGNSGIVAQDAQHKFFRLGITSL ATSDGHMQVMSATLLGPGDCAVIISNSGRTRDLMDAADIARKNGATTIAITASGSPLA HSCRIHLAADHPEGYDRYSPMVSRLLHLLIIDVLATCVALRIGEPLQPVLQQMKNNLR AKRYT" misc_feature complement(807210..808049) /locus_tag="Alide2_0771" /note="DNA-binding transcriptional regulator HexR; Provisional; Region: PRK11302" /db_xref="CDD:183082" misc_feature complement(807285..807704) /locus_tag="Alide2_0771" /note="RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose...; Region: SIS_RpiR; cd05013" /db_xref="CDD:88408" misc_feature complement(order(807495..807497,807627..807629)) /locus_tag="Alide2_0771" /note="putative active site [active]" /db_xref="CDD:88408" gene 808165..809115 /locus_tag="Alide2_0772" /db_xref="GeneID:10481793" CDS 808165..809115 /locus_tag="Alide2_0772" /inference="protein motif:TFAM:TIGR00874" /note="KEGG: dia:Dtpsy_0674 transaldolase B; TIGRFAM: Transaldolase 1; PFAM: Transaldolase" /codon_start=1 /transl_table=11 /product="transaldolase" /protein_id="YP_004386704.1" /db_xref="GI:330823401" /db_xref="GO:0004801" /db_xref="InterPro:IPR001585" /db_xref="InterPro:IPR004730" /db_xref="GeneID:10481793" /translation="MNQLDALKQFTTVVADTGDFKQLAQFQPRDATTNPSLILKAVQK SEYAPLLKDCVTRWHGRGIDELMDRLIVRFGCEILSLIPGRVSTEVDARLSFDTAATV ARAERIVELYQAEGVHIDRVLIKIAATWEGIQAARRLEERGIHTNLTLLFSFAQAVAC GQAKVQLISPFVGRIYDWYKKQAGSNWDEAAMAGANDPGVQSVRAIYNHYKHFGIATE VMGASFRNTGQIVALAGCDLLTIAPELLAQLAASDAPLARVLDPEAARHVQMAPVQYD EPGFRYALNADAMATEKLAEGIRAFAADAARLEQLMQAAA" misc_feature 808165..809106 /locus_tag="Alide2_0772" /note="transaldolase-like protein; Provisional; Region: PTZ00411" /db_xref="CDD:185601" misc_feature 808168..809097 /locus_tag="Alide2_0772" /note="Transaldolases including both TalA and TalB; Region: Transaldolase_TalAB; cd00957" /db_xref="CDD:188644" misc_feature order(808210..808212,808258..808260,808264..808269, 808423..808425,808429..808431,808537..808539, 808603..808605,808609..808611,808669..808671, 808684..808686) /locus_tag="Alide2_0772" /note="active site" /db_xref="CDD:188644" misc_feature order(808453..808455,808996..808998,809005..809007, 809017..809022,809038..809040,809047..809049, 809059..809061) /locus_tag="Alide2_0772" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188644" misc_feature 808537..808539 /locus_tag="Alide2_0772" /note="catalytic residue [active]" /db_xref="CDD:188644" gene 809112..810707 /locus_tag="Alide2_0773" /db_xref="GeneID:10481794" CDS 809112..810707 /locus_tag="Alide2_0773" /EC_number="5.3.1.9" /inference="protein motif:PRIAM:5.3.1.9" /note="KEGG: ajs:Ajs_0697 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI)" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate isomerase" /protein_id="YP_004386705.1" /db_xref="GI:330823402" /db_xref="InterPro:IPR001672" /db_xref="GeneID:10481794" /translation="MSFADPHTRCDRTPAWQRLHAHYDAAGRGFDLRAAFERDARRFT RFSQQAPYVFADLSKNLIDAQTEALLLQLARECGLEAYRDAMFAGAPINGTEQRAVMH WLLREPSPAQSGQALEATDTVANGLREVHATLDAMLRLAERVRADEAITDIVNIGIGG SDLGPAMVVKALDDLRHPGKRLHFVSNVDGMELGSLLRQLRPANTLFLIASKTFTTLE TMTNAHAAREWFLAQGGSQDGLVRHFYALTTNLEAAAQFGIETTLGFWDWVGGRYSLW SAIGLPIAIAIGAQGFRDLLAGAHAMDEHFRTTPLEANLPVRLALLDLWYRNFHGFAS RSMAPYSHGLRRLPAYLQQLEMESNGKGVDAQGDPLPYATAPVVWGEPGTNGQHAFFQ MIHQGPDTVPVEFIALREPGRDLKGQHPRLVANALAQARALMMGRPHEQDGHRRFAGN RPSTFLLLECLDPASLGALIALYEHRVFASGALWGINSFDQWGVELGKTIARDLEPRL ATGDVQGLDASTAGLLRRLAPMA" misc_feature 809127..810692 /locus_tag="Alide2_0773" /note="glucose-6-phosphate isomerase; Reviewed; Region: pgi; PRK00179" /db_xref="CDD:178917" misc_feature 809502..809942 /locus_tag="Alide2_0773" /note="Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015" /db_xref="CDD:88410" misc_feature order(809583..809585,809589..809594,809742..809750, 809757..809759,809922..809924) /locus_tag="Alide2_0773" /note="active site" /db_xref="CDD:88410" misc_feature order(809667..809678,809763..809765,809775..809777, 809784..809786) /locus_tag="Alide2_0773" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88410" misc_feature 810120..810623 /locus_tag="Alide2_0773" /note="Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016" /db_xref="CDD:88411" misc_feature order(810132..810134,810168..810170,810180..810182, 810189..810194,810252..810254,810258..810266, 810273..810278,810285..810290,810297..810299, 810363..810365,810369..810371,810393..810395, 810402..810404) /locus_tag="Alide2_0773" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88411" misc_feature order(810168..810170,810180..810182) /locus_tag="Alide2_0773" /note="active site" /db_xref="CDD:88411" gene complement(810830..812476) /locus_tag="Alide2_0774" /db_xref="GeneID:10481795" CDS complement(810830..812476) /locus_tag="Alide2_0774" /inference="protein motif:TFAM:TIGR02348" /note="KEGG: aav:Aave_0945 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1" /codon_start=1 /transl_table=11 /product="chaperonin GroEL" /protein_id="YP_004386706.1" /db_xref="GI:330823403" /db_xref="InterPro:IPR001844" /db_xref="InterPro:IPR002423" /db_xref="GeneID:10481795" /translation="MAAKDVVFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSF GAPTVTKDGVSVAKEIELKDKIQNMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVRE GSKYVAAGLNPMDLKRGIDKAVTALVEELKKASKATTTSKEIAQVGSISANSDSSIGE IIANAMDKVGKEGVITVEDGKSLNNELDVVEGMQFDRGYLSPYFINNPEKQVALLDNP FVLLFDKKISNIRDLLPTLEAVAKAGRPLLIIAEDVEGEALATLVVNTIRGILKVVAV KAPGFGDRRKAMLEDIAILTGGKVIAEEVGLSLEKVTLADLGQAKTIEVGKENTTIID GAGNADDIQARVKQIRIQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK KARVEDALHATRAAVEEGIVAGGGVALLRARQAVGQLKGDNPDQDAGIKLILKAIEAP LREIVANAGGEPSVVVNEVLNGKGNYGFNAANDTYGDMLEMGILDPTKVTRTALQNAA SVASLLLTTEAMVAEAPKDDAPAGGMPDMGGMGGMGGMGM" misc_feature complement(810896..812473) /locus_tag="Alide2_0774" /note="chaperonin GroEL; Reviewed; Region: groEL; PRK12849" /db_xref="CDD:183791" misc_feature complement(810908..812467) /locus_tag="Alide2_0774" /note="GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344" /db_xref="CDD:48161" misc_feature complement(order(810911..810931,810938..810940, 811100..811102,811319..811321,811325..811327, 811706..811708,811790..811792,811886..811888, 812249..812251,812258..812260,812270..812272, 812294..812296,812300..812302,812330..812332, 812336..812341,812354..812356,812360..812371, 812402..812404,812453..812455,812465..812467)) /locus_tag="Alide2_0774" /note="ring oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:48161" misc_feature complement(order(810992..810994,810998..811000, 811115..811117,811232..811234,811283..811285, 812027..812029,812204..812206,812216..812218, 812378..812386)) /locus_tag="Alide2_0774" /note="ATP/Mg binding site [chemical binding]; other site" /db_xref="CDD:48161" misc_feature complement(order(811076..811078,811085..811090, 811094..811096,811121..811123,811175..811177, 812150..812152)) /locus_tag="Alide2_0774" /note="stacking interactions; other site" /db_xref="CDD:48161" misc_feature complement(order(811247..811252,811352..811354, 811898..811900,811919..811921,812054..812056)) /locus_tag="Alide2_0774" /note="hinge regions; other site" /db_xref="CDD:48161" gene complement(812574..812864) /locus_tag="Alide2_0775" /db_xref="GeneID:10481796" CDS complement(812574..812864) /locus_tag="Alide2_0775" /inference="protein motif:PFAM:PF00166" /note="KEGG: dac:Daci_5660 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10" /codon_start=1 /transl_table=11 /product="chaperonin Cpn10" /protein_id="YP_004386707.1" /db_xref="GI:330823404" /db_xref="InterPro:IPR020818" /db_xref="GeneID:10481796" /translation="MNLRPLADRVIVKRLENETKTASGIVIPDNAAEKPDQGEVVAVG PGRLDEDGDRIAMSVKVGDRVLFGKYSGQTVKVHGDELLVMKEDDLFAVVEK" misc_feature complement(812583..812861) /locus_tag="Alide2_0775" /note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts...; Region: cpn10; cd00320" /db_xref="CDD:73192" misc_feature complement(order(812586..812594,812640..812642, 812646..812648,812661..812663,812691..812693, 812754..812759,812838..812840,812847..812849, 812853..812855,812859..812861)) /locus_tag="Alide2_0775" /note="oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:73192" misc_feature complement(812772..812813) /locus_tag="Alide2_0775" /note="mobile loop; other site" /db_xref="CDD:73192" misc_feature complement(order(812697..812699,812730..812732)) /locus_tag="Alide2_0775" /note="roof hairpin; other site" /db_xref="CDD:73192" gene complement(813066..814094) /locus_tag="Alide2_0776" /db_xref="GeneID:10481797" CDS complement(813066..814094) /locus_tag="Alide2_0776" /inference="protein motif:TFAM:TIGR00125" /note="KEGG: ajs:Ajs_0701 cytidyltransferase-like protein; TIGRFAM: Cytidyltransferase-related; PFAM: NUDIX hydrolase domain; Cytidylyltransferase" /codon_start=1 /transl_table=11 /product="cytidyltransferase-like domain-containing protein" /protein_id="YP_004386708.1" /db_xref="GI:330823405" /db_xref="GO:0003824" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR004820" /db_xref="InterPro:IPR004821" /db_xref="GeneID:10481797" /translation="MYDAAVLIGRFQPVHNGHLALLREALARARQAVVVVGSAFQART PKNPFTWQERAQMLRAALPEPERARLTMLPMRDYYDEPRWADAVRQAVAQATPARARL ALVGHFKDSSSGYLRAFPGWDLIRMERQGTIDATAIRDAYLGASASTPEAALAPWAPH IPAATRAWLEQFAHTAHYPALQEEWRMLRAYRNSWACAPYPPVFVTVDALLRCQGRVL LIRRAHAPGKGLWALPGGFVEPHDTLWQSCLRELAEETHCPLPEERLRQALRAVRVFD HPERSQRGRVITHAYFFDLDDDALPEVRGGDDAAHAQWVAQEQLAGMEDQFHDDHWHI IGQLLAPG" misc_feature complement(813078..814094) /locus_tag="Alide2_0776" /note="bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional; Region: PRK05379" /db_xref="CDD:180046" misc_feature complement(813531..814082) /locus_tag="Alide2_0776" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(order(813684..813695,814041..814052)) /locus_tag="Alide2_0776" /note="active site" /db_xref="CDD:173912" misc_feature complement(order(813690..813692,814041..814043, 814050..814052)) /locus_tag="Alide2_0776" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(814041..814052) /locus_tag="Alide2_0776" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature complement(813684..813695) /locus_tag="Alide2_0776" /note="KMSKS motif; other site" /db_xref="CDD:173912" misc_feature complement(813123..813482) /locus_tag="Alide2_0776" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or...; Region: Nudix_Hydrolase; cl00447" /db_xref="CDD:189099" misc_feature complement(order(813327..813353,813381..813389)) /locus_tag="Alide2_0776" /note="nudix motif; other site" /db_xref="CDD:72880" gene complement(814108..815289) /locus_tag="Alide2_0777" /db_xref="GeneID:10481798" CDS complement(814108..815289) /locus_tag="Alide2_0777" /EC_number="2.5.1.6" /inference="protein motif:TFAM:TIGR01034" /note="TIGRFAM: S-adenosylmethionine synthetase; KEGG: dia:Dtpsy_0683 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine synthetase" /protein_id="YP_004386709.1" /db_xref="GI:330823406" /db_xref="GO:0004478" /db_xref="GO:0005524" /db_xref="InterPro:IPR002133" /db_xref="InterPro:IPR022628" /db_xref="InterPro:IPR022629" /db_xref="InterPro:IPR022630" /db_xref="GeneID:10481798" /translation="MANDFLFTSESVSEGHPDKVADQISDAILDAIFEQDPRSRVAAE TLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSN DIAQGVDHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGR LPFLRPDAKSQVTMRYLDGKPHSIDTVVLSTQHSPDQSETATKMKASFTEAIIEEIIK PVLPKEWLKDTKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDP TKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVISDERI AQLVHEYFDLRPKGIIQMLDLLRPIYAKTAAYGHFGREEPEFTWERTDKAQALRAAAG L" misc_feature complement(814111..815283) /locus_tag="Alide2_0777" /note="S-adenosylmethionine synthetase; Validated; Region: PRK05250" /db_xref="CDD:179974" misc_feature complement(814987..815277) /locus_tag="Alide2_0777" /note="S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438" /db_xref="CDD:189548" misc_feature complement(814573..814941) /locus_tag="Alide2_0777" /note="S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772" /db_xref="CDD:190418" misc_feature complement(814150..814569) /locus_tag="Alide2_0777" /note="S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773" /db_xref="CDD:111646" gene 815423..816277 /locus_tag="Alide2_0778" /db_xref="GeneID:10481799" CDS 815423..816277 /locus_tag="Alide2_0778" /inference="protein motif:PFAM:PF03279" /note="PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis acyltransferase" /protein_id="YP_004386710.1" /db_xref="GI:330823407" /db_xref="GO:0008415" /db_xref="InterPro:IPR004960" /db_xref="GeneID:10481799" /translation="MPSIFRLLSALPLWLLHAIGALLGWVAFCASPTYRRRFLANAAR AGYRLRDVRAAVAHAGRMVAEAPRLWLAPEPPPCEVRNAECVQRAWEQGRGIVFLTPH IGCFEMSVQEGARRWSPQHGSFTILYRPARQPWLARVMQTARNRPGIAAVPTSLQGVR QMLKALRAGRAVGLLPDQVPPQGQGLWSPFFGQSAYTMTLAARLVQQTGAAVILARCE RLPRGRGYVLHLQALEQPLAPTLDAAVLQINQAMERLIRQSPDQYLWGYARYKQPRAE AQQPESIA" misc_feature 815657..816235 /locus_tag="Alide2_0778" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984" /db_xref="CDD:153246" misc_feature order(815726..815728,815735..815737,815741..815743, 815804..815815,815954..815962) /locus_tag="Alide2_0778" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153246" gene 816274..817155 /locus_tag="Alide2_0779" /db_xref="GeneID:10481800" CDS 816274..817155 /locus_tag="Alide2_0779" /inference="protein motif:PFAM:PF03279" /note="PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis acyltransferase" /protein_id="YP_004386711.1" /db_xref="GI:330823408" /db_xref="GO:0008415" /db_xref="InterPro:IPR004960" /db_xref="GeneID:10481800" /translation="MTARLASRAGIALLNLLGRLPLPALRALGAWIGRLLFVLAAPRR KVALRNLELCFPDVPEQQRRAWARESFESFCQTFLDRGWLWSGSEALVRSRVKLVGAV QELEGDTPTIVFAPHFYSMDAGGLALPLNTGREFTSIFATNPDPALDAWFMGGRQRFG NVRMLNRADGVKPIIACLRKGGLLYLLPDMDYGRNDSVFVPFFAMPDAATIPSLSRFA RLGRAKVVALYSRMTPEGYVAELTPAWENFPTDDHVADTARMNRELEAAIRTMPAQYY WVHKRFKTRPEGQPSLY" misc_feature 816580..817122 /locus_tag="Alide2_0779" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984" /db_xref="CDD:153246" misc_feature order(816622..816624,816631..816633,816637..816639, 816691..816702,816841..816849) /locus_tag="Alide2_0779" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153246" gene complement(817196..818098) /locus_tag="Alide2_0780" /db_xref="GeneID:10481801" CDS complement(817196..818098) /locus_tag="Alide2_0780" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_1352 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386712.1" /db_xref="GI:330823409" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481801" /translation="MNFDLSDLRAFVAVADLASFRAAAEALHLSQPALSRRVDKLEQA LGFRLLERSTRKVELNAMGRAFLPRARHVLAELEGALLGMADLAERIHGLVTVACIPS AVDNFVAQAARGFQQRFPRIRLRVLDQPAPEILMSVARAEADFGISYLGTQEPDLDFD PLVDEPFVLACRSDHPLAQRPAIEWAELAGHDCIALAPGSGNRLLIEQGLAGNGARPR WSCEAQHVPAVLSLIEAGVGVGAVPQLALAGATSAALVSIPLVAPRIARSVGIVRRRG RPLSPAAQAFHDAVAGAAQRLRFQ" misc_feature complement(817205..818092) /locus_tag="Alide2_0780" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(817907..818086) /locus_tag="Alide2_0780" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(817229..817819) /locus_tag="Alide2_0780" /note="TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440" /db_xref="CDD:176131" misc_feature complement(order(817394..817399,817403..817408, 817424..817441,817715..817735,817739..817741, 817751..817753,817760..817765,817769..817774)) /locus_tag="Alide2_0780" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176131" gene 818195..819175 /locus_tag="Alide2_0781" /db_xref="GeneID:10481802" CDS 818195..819175 /locus_tag="Alide2_0781" /inference="similar to AA sequence:KEGG:Veis_1351" /note="KEGG: vei:Veis_1351 fis family transcriptional regulator" /codon_start=1 /transl_table=11 /product="fis family transcriptional regulator" /protein_id="YP_004386713.1" /db_xref="GI:330823410" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481802" /translation="MFPIRWKAALGCLALISLAVVTQAQAQAPWPARAITLIVPFAAG GGTDSIARDIAKNMAERLGQPVVVDNRGGAGGAIGAQAVAKAAPDGYTLLFATSTFAT NAAVEPRLPYDPVKDFAPVAMIGRGPLLVVTSKQLGVGSVAQLVAAAKARPEGLNFCS AGNGSINHLAGEMFRQKTGLSMTHVPFKGSAPATVELLAGRVDLFFATVPTIQSHLKE NQLGLLAVTSAKRSRLFPNLPTLAEAGVPGYDVTTWWGVLAPAKTPASIVEALNRAVN ESAAAEPVKGRLQHEGADPVRLAPAAFGEELRKELALWRNVAAAPGMQLR" sig_peptide 818195..818275 /locus_tag="Alide2_0781" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.977 at residue 27" misc_feature 818210..819166 /locus_tag="Alide2_0781" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 818342..819136 /locus_tag="Alide2_0781" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 819190..820170 /locus_tag="Alide2_0782" /db_xref="GeneID:10481803" CDS 819190..820170 /locus_tag="Alide2_0782" /inference="similar to AA sequence:KEGG:RALTA_B1946" /note="KEGG: cti:RALTA_B1946 conserved hypothetical protein UPF0065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386714.1" /db_xref="GI:330823411" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481803" /translation="MQHTLSRRTFVGASAALALTGWARAQGGYPNKPITVIVPYAPGG QGDVFARLVGEPLARALGQPVVVDNRPGASGALGTRLAARAPADGYTLLMGQTGEIAI NGAAMKNPGYDALKDLRAVALVGDAPLVLAVPAASPFKSLADLVQAARERPGSVAYAS SGTATPGHLAAAELAARTGTQMTHIPYKGAGQAIADLIGAQVQFFFASASSIVGYVKG GKVRALAVSKPARIAALPGVPAVSDTLPDFAFSLWGGYFAPRGTPDAMVQRLAGEIGR IIAQGPLRERLEAEGSAVEAGTPKSFDAFVRAEADKYARLVKAAGATLEG" sig_peptide 819190..819267 /locus_tag="Alide2_0782" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.731 at residue 26" misc_feature 819226..820152 /locus_tag="Alide2_0782" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 819337..820155 /locus_tag="Alide2_0782" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 820197..821258 /locus_tag="Alide2_0783" /db_xref="GeneID:10481804" CDS 820197..821258 /locus_tag="Alide2_0783" /EC_number="1.1.1.85" /inference="protein motif:PRIAM:1.1.1.85" /note="KEGG: vei:Veis_1349 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="YP_004386715.1" /db_xref="GI:330823412" /db_xref="InterPro:IPR001804" /db_xref="GeneID:10481804" /translation="MKIVVLPGDGIGPETMAATIEVLQAASQRFGLNLQLDHDVAGHE SLRRHGATVTPALLAKVKAADGLMLGPMSTYDFKDESKGEINPSKFFRKELDLYANIR PARTWLGVPHKVDAFDLVVVRENTEGFYADRNIASGGSEMLITPDVAVSLRRITRGCC ERIARAAFELAMTRRRHVSIVHKANVLRIGDGMFIEECQRVARDFPEVQVDEFIVDAM MAHVVRAPQRFDVIVTTNMFGDILSDLTAELSGSLGLGGSVNAGRDHAMGQAAHGSAP DIAGQDIANPFSLILSAGQLLGWHGQRHGLPAFLAAAEAIEHTAAAAVEAGEVTPDAG GRLGTAATGRAFAQRLQGA" misc_feature 820197..821108 /locus_tag="Alide2_0783" /note="Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445" /db_xref="CDD:193821" gene 821258..822079 /locus_tag="Alide2_0784" /db_xref="GeneID:10481805" CDS 821258..822079 /locus_tag="Alide2_0784" /inference="protein motif:PFAM:PF04909" /note="PFAM: Amidohydrolase 2; KEGG: bbt:BBta_3003 hypothetical protein" /codon_start=1 /transl_table=11 /product="amidohydrolase 2" /protein_id="YP_004386716.1" /db_xref="GI:330823413" /db_xref="GO:0003824" /db_xref="InterPro:IPR006992" /db_xref="GeneID:10481805" /translation="MVAGACDCHTHVFGPRADYPMVDARHYTPGPAPLAALRAHLAGL GLERVVLVQPSVYGTDNRCMLDALARLDGAGRGIVVLEDGVDAAALRELHARGVRGVR INLESAGLRDIAGARALLQAWSARVADLGWHVQLYAAQPVVQALADDLARLPSSVVLD HFALADVMPGGDALTDLLRTGCVHVKLSAPYRLASPALGGAWARHWVDAVPGALLWAS DWPHTARGPGRAAHEVSAYRAIPANGLRQEIARWLPSAELRRRVLVDNPARLYGF" misc_feature 821264..822076 /locus_tag="Alide2_0784" /note="Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618" /db_xref="CDD:33417" misc_feature 821267..822067 /locus_tag="Alide2_0784" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature order(821282..821284,821288..821290,821654..821656, 821738..821740,821912..821914) /locus_tag="Alide2_0784" /note="active site" /db_xref="CDD:30035" gene complement(822067..822759) /locus_tag="Alide2_0785" /db_xref="GeneID:10481806" CDS complement(822067..822759) /locus_tag="Alide2_0785" /inference="protein motif:HAMAP:MF_00321" /note="TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: aav:Aave_0983 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related" /codon_start=1 /transl_table=11 /product="GTP-binding protein engB" /protein_id="YP_004386717.1" /db_xref="GI:330823414" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR019987" /db_xref="GeneID:10481806" /translation="MSTTPHVPGPGLPDAKAALGWMHTARFLTTAAQLNQLPAITVPE IAFVGRSNAGKSTCINTLTQQRQLAFASKKPGRTQHINLFALGKQGATDAVLADLPGY GYAAVSRSDKQRWQQVMANYLVSRQGLTGIVLLCDPRLGLTELDEALLEVVRPRVEQG LKFLVLLTKADKLTRAEQAKALSIARLQAGGGEVRMFSALKRQGVDEVAQLLWQWAHP TEEPAAEPDQNP" misc_feature complement(822112..822630) /locus_tag="Alide2_0785" /note="The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and...; Region: YihA_EngB; cd01876" /db_xref="CDD:133278" misc_feature complement(822592..822615) /locus_tag="Alide2_0785" /note="G1 box; other site" /db_xref="CDD:133278" misc_feature complement(order(822163..822168,822247..822249, 822253..822255,822466..822468,822526..822534, 822541..822549,822589..822609)) /locus_tag="Alide2_0785" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133278" misc_feature complement(822517..822537) /locus_tag="Alide2_0785" /note="Switch I region; other site" /db_xref="CDD:133278" misc_feature complement(822526..822528) /locus_tag="Alide2_0785" /note="G2 box; other site" /db_xref="CDD:133278" misc_feature complement(822457..822468) /locus_tag="Alide2_0785" /note="G3 box; other site" /db_xref="CDD:133278" misc_feature complement(order(822373..822378,822385..822429, 822448..822459)) /locus_tag="Alide2_0785" /note="Switch II region; other site" /db_xref="CDD:133278" misc_feature complement(822247..822258) /locus_tag="Alide2_0785" /note="G4 box; other site" /db_xref="CDD:133278" misc_feature complement(822160..822168) /locus_tag="Alide2_0785" /note="G5 box; other site" /db_xref="CDD:133278" gene 822842..823480 /locus_tag="Alide2_0786" /db_xref="GeneID:10481807" CDS 822842..823480 /locus_tag="Alide2_0786" /inference="protein motif:PFAM:PF00034" /note="PFAM: Cytochrome c, class I; KEGG: ajs:Ajs_0710 cytochrome c, class I" /codon_start=1 /transl_table=11 /product="cytochrome c class I" /protein_id="YP_004386718.1" /db_xref="GI:330823415" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10481807" /translation="MKLLASLLMAAALAAPAFPTLAAGETPAQQKAAKPDLTKGAASY GAVCAACHAADGNSTIAVNPSLAQQHPEYLVKQLQDFKSGKRADPVMQGMAAMLSDDD MRNVAGWLASQKAKEGFAKDKDLVALGERIYRGGIQDRSIAACAGCHSPNGAGIPAQY PRLSGQHSDYTVKQLVDFRDGKRGNNAQMRDVAAKLNDREIKAVADYIAGLR" sig_peptide 822842..822910 /locus_tag="Alide2_0786" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.961 at residue 23" misc_feature 822935..823246 /locus_tag="Alide2_0786" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature <823271..823477 /locus_tag="Alide2_0786" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 823609..825807 /locus_tag="Alide2_0787" /db_xref="GeneID:10481808" CDS 823609..825807 /locus_tag="Alide2_0787" /inference="protein motif:PFAM:PF05140" /note="PFAM: Cytochrome c biogenesis protein; KEGG: dia:Dtpsy_0691 ResB family protein" /codon_start=1 /transl_table=11 /product="ResB family protein" /protein_id="YP_004386719.1" /db_xref="GI:330823416" /db_xref="InterPro:IPR007816" /db_xref="GeneID:10481808" /translation="MSDTSLGHGHAWRPHATRSMTELLASMRFAIALLTVICIASVIG TVLKQHEPVTNYVNQFGPFWADLFLALKLNAVYSAWWFLLILAFLVVSTSLCIARHAP KYIADLRNYKENIREKSLQAFHHKATVPLAGEAPQAAAQRIGQLLVSGGWKVRLQQRP TPAGDGWMVAAKAGAANKLGYIAAHSAIVLVCLGGLLDGDLIVRAQMWFGGKTPYAGG GLIAEVKPEHRLSERNPTFRGNLVVAEGTQSATAILTQSDGVLLQELPFSVELKKFVV EHYSTGMPKLFASDIVIHDRATGKATPARVEVNHPVSYQGVEIYQSSFDDGGSEVKLH ARPMVPGAQPFDVEGVIGGSTRLTHTGLGEAMTLEFTGLRVLNVENFGDAGAAGSGAD VRKVDLRESIESRLGAGNKTVGKRELRNVGPSISYKLRDAAGQAREFHNFMLPVDTGD GQPVFLLGVRETPSEPLRYLRVPVDAEGGMDGFLRMRLALADPQQREQAVRRYAAVAV DGSRPELAAQLALSAGRALALFAGDVAATGAAADDGAGSGGRPRGGLQAISDFMEANV PEAERSRASEVLVRILNGALFELAQMTRERAGLAPLPQDESTRAFMTQAVLSLSDAQA YPAPLVFELRDFRQVQASVFQVARAPGKNVVYLGCALLILGVFAMLYVRDRRLWVWLA PEGGGARATMALSANRRTLDTDREFAQLRTQLLEAETETETAQPPHGGTP" misc_feature 823687..>824595 /locus_tag="Alide2_0787" /note="ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]; Region: ResB; cl09125" /db_xref="CDD:186833" misc_feature <825502..825705 /locus_tag="Alide2_0787" /note="ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]; Region: ResB; cl09125" /db_xref="CDD:186833" gene 825804..827138 /locus_tag="Alide2_0788" /db_xref="GeneID:10481809" CDS 825804..827138 /locus_tag="Alide2_0788" /inference="protein motif:TFAM:TIGR03144" /note="KEGG: ajs:Ajs_0712 cytochrome c assembly protein; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein CcsB" /protein_id="YP_004386720.1" /db_xref="GI:330823417" /db_xref="InterPro:IPR002541" /db_xref="InterPro:IPR017562" /db_xref="GeneID:10481809" /translation="MNTATTTLTLNEGYFARRNWLDWLFALAVLAGGLFALQRYAAYM DVYEKGILLATMPGAIWLGWFWRPLRALMLAVAACALLAIGLYQNGGAGDLARADTVF GLKYFLSSQSAILWMSMLFFMSTAFYWVGMFTRGQGQAMMRIGSRIAWVAVALALIGT MVRWYESYQIGPDIGHIPVSNLYEVFVMFCWMTALFYLYYEEQYQTRALGGFVMLVVS AAVGFLLWYTVVREAHEIQPLVPALKSWWMKLHVPANFIGYGTFALSAMVAFAYLVKQ QAAETRWYKLAPLWLLGVVLCFEPIVFRQGATEGGGAYWMVYFGISALIVAGILFARR RIAEQLPALQVLDDVMYKSIAVGFAFFTIATVLGALWAAEAWGGYWSWDPKETWALIV WLNYAAWLHMRLMKGLRGTMSAWWALVGLVVTTFAFLGVNMFLSGLHSYGTL" misc_feature 826248..827129 /locus_tag="Alide2_0788" /note="Cytochrome C assembly protein; Region: Cytochrom_C_asm; cl00504" /db_xref="CDD:186041" gene 827312..828310 /locus_tag="Alide2_0789" /db_xref="GeneID:10481810" CDS 827312..828310 /locus_tag="Alide2_0789" /inference="protein motif:PFAM:PF00174" /note="PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: dia:Dtpsy_0693 putative sulfite oxidase subunit YedY" /codon_start=1 /transl_table=11 /product="oxidoreductase molybdopterin binding protein" /protein_id="YP_004386721.1" /db_xref="GI:330823418" /db_xref="GO:0009055" /db_xref="InterPro:IPR000572" /db_xref="GeneID:10481810" /translation="MLIHTHDNGFDHHSASEITPRAVYEQRRALLRLMAGGAAGALLA SWAGRQALAQQVQPPGRLAALPGVRSAVVGAVTMEKPTDYKDATGYNNFYEFGTDKTD PARNAHTLKTRPWTVEVEGLVNKPRRFDIDELLRLSPMEERIYRLRCVEGWSMVIPWV GYSLAELIRRVEPQGSAKYVEFVTLADKATMPYVGSRILDWPYTEGLRVDEAMHPLTL LAFGMYGEVLPNQNGAPVRIVVPWKYGFKSAKSIVKIRFTEKEPATAWNKAARNEYGF YSNVNPGVDHPRWSQATERRIGEDGLFAKKRKTLLFNGYEAQVGQLYAGMDLKKFY" misc_feature 827573..828214 /locus_tag="Alide2_0789" /note="Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199" /db_xref="CDD:185822" misc_feature order(827579..827581,827585..827587,827591..827593, 827756..827758,827918..827920,828005..828007, 828020..828022,828044..828046,828053..828055, 828059..828064) /locus_tag="Alide2_0789" /note="Moco binding site; other site" /db_xref="CDD:29401" misc_feature 827756..827758 /locus_tag="Alide2_0789" /note="metal coordination site [ion binding]; other site" /db_xref="CDD:29401" gene 828310..828951 /locus_tag="Alide2_0790" /db_xref="GeneID:10481811" CDS 828310..828951 /locus_tag="Alide2_0790" /inference="protein motif:HAMAP:MF_01207" /note="KEGG: dia:Dtpsy_0694 ferric reductase domain protein transmembrane component; HAMAP: Sulphoxide reductase heme-binding subunit YedZ; PFAM: Flavoprotein transmembrane component" /codon_start=1 /transl_table=11 /product="sulfoxide reductase heme-binding subunit yedZ" /protein_id="YP_004386722.1" /db_xref="GI:330823419" /db_xref="InterPro:IPR013130" /db_xref="InterPro:IPR022837" /db_xref="GeneID:10481811" /translation="MRQARPGGQAAADRALRHPAAKPLLFALCLLPLAWLVYAAAFDR LGANPAEALIRSMGDWTLRLLCLTLAVTPLRLAARLPALARFRRMLGVYTFFYAALHL LCYAWFDMGLDGGEIARDVAKRPFILVGMCGFVLLLVLAATSFNRAVRWLGGRRWQRL HRSVYLVAGLALLHFFWMRAGKNDFAEVAVYAAILAALLLARPWLRRGRSPGP" misc_feature 828418..828882 /locus_tag="Alide2_0790" /note="Ferric reductase like transmembrane component; Region: Ferric_reduct; cl01043" /db_xref="CDD:194017" gene complement(829037..829840) /locus_tag="Alide2_0791" /db_xref="GeneID:10481812" CDS complement(829037..829840) /locus_tag="Alide2_0791" /inference="protein motif:PFAM:PF00753" /note="KEGG: dia:Dtpsy_0695 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like" /codon_start=1 /transl_table=11 /product="beta-lactamase domain-containing protein" /protein_id="YP_004386723.1" /db_xref="GI:330823420" /db_xref="GO:0016787" /db_xref="InterPro:IPR001279" /db_xref="GeneID:10481812" /translation="MPLEPLELYRDQHHACLMFSDLIEEDGQAVQANQFLIVDGDTGA IIDPGGNLAFNELFMGMSRYFPPHRLSYLLASHADPDIIASLDRWLSSTRALLVISRV WERFAPHFAKLGKTENRIIGVPDGGGLLPLGRHELLLLPAHFMHSEGNFHFYDPVSRI LFTGDLGVSMTSGAEARVPVTALAPHVARMEAFHRRYMVSNKVLRLWTRMARQLDIAM LAPQHGAPIMGQQAITDFFDWLDGLECGTDLFDERSYQIPTARIDPVAH" misc_feature complement(829172..829753) /locus_tag="Alide2_0791" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(829909..831198) /locus_tag="Alide2_0792" /db_xref="GeneID:10481813" CDS complement(829909..831198) /locus_tag="Alide2_0792" /EC_number="4.1.1.20" /inference="protein motif:TFAM:TIGR01048" /note="TIGRFAM: Diaminopimelate decarboxylase; KEGG: dia:Dtpsy_0696 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal" /codon_start=1 /transl_table=11 /product="diaminopimelate decarboxylase" /protein_id="YP_004386724.1" /db_xref="GI:330823421" /db_xref="GO:0008836" /db_xref="InterPro:IPR002986" /db_xref="InterPro:IPR022643" /db_xref="InterPro:IPR022644" /db_xref="GeneID:10481813" /translation="MIPSVLPGQPQLHYRDQALYLEDRRLSDLAREHGTPLYVYSQAS MLQALAAYQRGFAGRRVQICYAMKANSSLAVLQLFAQHGCGFDIVSGGELERVMAAGG DPAKVIFSGVGKTRAEMRQALEAGIGCFNVESEAELEVLSEVAQSMGLRAPISIRVNP NVDAKTHPYISTGLKGNKFGIAHERTLDTYRRAAQLPGLRVVGIDCHIGSQITEETPY LDAMDRLLDLVQAIEAAGIAIHHIDFGGGLGIDYNGDTPPAADALWSSLLAKLDARGY GDRLLMIEPGRSLVGNAGVCLTQVLYLKPGEQKNFCVVDAAMNDLPRPAMYQAYHAIV PLDAAAKAPEQVYDVVGPICESGDWLGKDRSLAVAAGDMLAVLSTGAYCSSMGSTYNT RARPAEVLVDGAQAHLIRAREGISDIFRCERLIPPKS" misc_feature complement(829930..831159) /locus_tag="Alide2_0792" /note="diaminopimelate decarboxylase; Region: lysA; TIGR01048" /db_xref="CDD:188105" misc_feature complement(829996..831102) /locus_tag="Alide2_0792" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase; Region: PLPDE_III_DapDC; cd06828" /db_xref="CDD:143501" misc_feature complement(order(830029..830031,830041..830043, 830053..830055,830137..830139,830218..830220, 830230..830232,830338..830349,830458..830463, 830569..830571,830578..830580,830584..830586, 830728..830730,830869..830871,830938..830940, 830995..830997,831001..831003)) /locus_tag="Alide2_0792" /note="active site" /db_xref="CDD:143501" misc_feature complement(order(830053..830055,830137..830139, 830338..830349,830458..830463,830569..830571, 830578..830580,830584..830586,830728..830730, 830869..830871,830938..830940,830995..830997, 831001..831003)) /locus_tag="Alide2_0792" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(830029..830031,830041..830043, 830053..830055,830134..830139,830218..830220, 830230..830232,830338..830340,830569..830571, 830578..830580,830995..830997)) /locus_tag="Alide2_0792" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(830137..830139,830995..830997)) /locus_tag="Alide2_0792" /note="catalytic residues [active]" /db_xref="CDD:143501" misc_feature complement(order(830014..830016,830023..830034, 830038..830046,830125..830127,830131..830148, 830260..830262,830266..830268,830287..830289, 830293..830295,830659..830670,830791..830793, 830800..830802,830845..830847,830857..830865, 830920..830925,830929..830934,830977..830982)) /locus_tag="Alide2_0792" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143501" gene complement(831195..831407) /locus_tag="Alide2_0793" /db_xref="GeneID:10481814" CDS complement(831195..831407) /locus_tag="Alide2_0793" /inference="similar to AA sequence:KEGG:Ajs_0717" /note="manually curated; KEGG: ajs:Ajs_0717 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386725.1" /db_xref="GI:330823422" /db_xref="GeneID:10481814" /translation="MLRARQILVRTIALALSAAALGCGQRGPLYLPTEPAAAQRATLP ETLNPAASRATAPAAPSSVPASSSLP" sig_peptide complement(831339..831407) /locus_tag="Alide2_0793" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.950 at residue 23" gene 831420..831749 /locus_tag="Alide2_0794" /db_xref="GeneID:10481815" CDS 831420..831749 /locus_tag="Alide2_0794" /inference="protein motif:HAMAP:MF_00142" /note="TIGRFAM: Frataxin-like; HAMAP: Frataxin-like; KEGG: ajs:Ajs_0728 frataxin family protein; PFAM: Frataxin-like" /codon_start=1 /transl_table=11 /product="protein cyaY" /protein_id="YP_004386726.1" /db_xref="GI:330823423" /db_xref="InterPro:IPR002908" /db_xref="GeneID:10481815" /translation="MTDIEFMDRAEQLLLAVEQGCDRINEETDADLDSQRTGGMVTIS FRNRSQIVINLQKPLHEVWMAAQSGGYHYRFDGARWMDTKGDGEFFAALSRDASRQAG QELRFTA" misc_feature 831420..831740 /locus_tag="Alide2_0794" /note="Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in...; Region: Frataxin; cl00238" /db_xref="CDD:193727" misc_feature order(831426..831428,831450..831455,831462..831464, 831474..831476,831483..831488,831504..831506, 831510..831512) /locus_tag="Alide2_0794" /note="putative iron binding site [ion binding]; other site" /db_xref="CDD:29607" gene complement(831756..834071) /locus_tag="Alide2_0795" /db_xref="GeneID:10481816" CDS complement(831756..834071) /locus_tag="Alide2_0795" /inference="protein motif:TFAM:TIGR02074" /note="KEGG: dia:Dtpsy_0698 penicillin-binding protein, 1A family; TIGRFAM: Penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase" /codon_start=1 /transl_table=11 /product="penicillin-binding protein, 1A family" /protein_id="YP_004386727.1" /db_xref="GI:330823424" /db_xref="GO:0008233" /db_xref="InterPro:IPR001264" /db_xref="InterPro:IPR001460" /db_xref="InterPro:IPR011816" /db_xref="GeneID:10481816" /translation="MRWLLRGLAWLVGLGVAGALAGVLVVGVGLAMAYPNLPDVSDLA DYRPKLPLRVYSSEGALLGEFGEERRNLTPIEDIPAVMTNAVLAIEDARFFQHGGVDY KGVLRAALANLGRVKSQGASTITMQVARNVYLSSEKTLTRKIYEILLTFKLEHLLSKN QILEIYMNQIYLGNRAYGFAAASEAYFGKPLKSISIAEAAMLAGLPKAPSAYNPISNP KRARIRQLYIIDRMLENGFITAEQAAAAKQEDLKLRSSTNSTRVHAEYVAEMARQLVF SQYGAEAYTRGLNVYTTLNAGEQEAAYAALRKGIMDYERRQHYRGPERFVNLPASPAE AEDAIDDVLASHPDNGDVLAAVVLEASSKKIVAARADGEQIEITGEGLKPAQSGLSDK APPNIKLRRGAVIRVVQTPKKTWEITQLPEVEGAFVAMDPRTGAIHALVGGFDFDKNK FNHATQAWRQPGSAFKPFIYSAALEKGFTPATVVNDAPLFFSAGATGAQPWEPKNYDG KYDGPMTLRTGLARSKNVVSIRVLQAVGPKTAQDWVTRFGFDADKHPAYLTMALGAGS VTPMQMATAYSVFANGGYRVNPYLVTRVTDHKGRVLSNVQPPATTDNPRAIDARNAFV MDSLLQEVTRSGTAARAQATLKRPDLYGKTGTTNDAVDAWFAGFQPSLVAVTWVGYDT PRNLGSRETGGGLALPIWISFMDKALKGVPVAEPTVPPGVVNVSGEWFYEEYARNAGV ASVGMDAPAPAAPAVAPAPEERSRILDLFRN" sig_peptide complement(833970..834071) /locus_tag="Alide2_0795" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.675) with cleavage site probability 0.583 at residue 34" misc_feature complement(831897..833969) /locus_tag="Alide2_0795" /note="penicillin-binding protein 1a; Provisional; Region: mrcA; PRK11636" /db_xref="CDD:183248" misc_feature complement(833373..833900) /locus_tag="Alide2_0795" /note="Transglycosylase; Region: Transgly; cl07896" /db_xref="CDD:195645" misc_feature complement(831957..832799) /locus_tag="Alide2_0795" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene 834398..835468 /locus_tag="Alide2_0796" /db_xref="GeneID:10481817" CDS 834398..835468 /locus_tag="Alide2_0796" /inference="protein motif:TFAM:TIGR01175" /note="TIGRFAM: Type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM" /codon_start=1 /transl_table=11 /product="type IV pilus assembly protein PilM" /protein_id="YP_004386728.1" /db_xref="GI:330823425" /db_xref="InterPro:IPR005883" /db_xref="GeneID:10481817" /translation="MGSLFSRQSAPLLGVDISSSSVKLVELGRDKGGTLVLECCAIEP LERGWITDGNIEKFDEVAEALRRLVRKSGTRTKNVALALPPSAVITKRISLPGGMTEQ ELEVQVESEANQYIPFSLDEVSLDFCVVGPSKNAPGDVDVLIAASRKEKVQDRQGLAE AAGLKPVIVDIESHAARLAAGRLIEALPNRGVDSVVALFEVGALTTSMQVIRNDDVLY ERDQAFGGAQLTQLIVRQYGFSQEEAEGKKRNGDLPEDYQSAVLQPFVDSLAQEIGRA LQFFFTSTPYNRVDHIMLAGGSAPLFGLTQTVTQNTGFACSVINPFEGMEVGSAVRLK RMAREAPSYLTSCGLAMRRFLQ" misc_feature 834437..835459 /locus_tag="Alide2_0796" /note="Competence protein A; Region: Competence_A; pfam11104" /db_xref="CDD:192707" misc_feature 834578..>834946 /locus_tag="Alide2_0796" /note="GspL cytoplasmic actin-ATPase-like region; Region: GspL; pfam05134" /db_xref="CDD:191202" gene 835465..836076 /locus_tag="Alide2_0797" /db_xref="GeneID:10481818" CDS 835465..836076 /locus_tag="Alide2_0797" /inference="protein motif:PFAM:PF05137" /note="PFAM: Fimbrial assembly; KEGG: ajs:Ajs_0731 fimbrial assembly family protein" /codon_start=1 /transl_table=11 /product="Fimbrial assembly family protein" /protein_id="YP_004386729.1" /db_xref="GI:330823426" /db_xref="InterPro:IPR007813" /db_xref="GeneID:10481818" /translation="MILINLLPHREAARKRRRETFQAIMLASALAGLAIAAAIYWWFQ VMITDQQDKNNFLRGEIQVLEQQIKEIATIEEEITALQARQKAVEDLQSDRNLPVHLL SELVQQLPDGVYVTSLKQVDQVVTMQGMAQSNERVSEMLRNLTNNTPWFSKPELVEIV AANVALTPKDQRRIASFNLRFRLMRSSEAQKAMDAASDAAAGK" misc_feature 835465..835977 /locus_tag="Alide2_0797" /note="Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilN; COG3166" /db_xref="CDD:32979" sig_peptide 835465..835575 /locus_tag="Alide2_0797" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.967) with cleavage site probability 0.801 at residue 37" misc_feature 835762..836013 /locus_tag="Alide2_0797" /note="Fimbrial assembly protein (PilN); Region: PilN; pfam05137" /db_xref="CDD:191205" gene 836073..836756 /locus_tag="Alide2_0798" /db_xref="GeneID:10481819" CDS 836073..836756 /locus_tag="Alide2_0798" /inference="similar to AA sequence:KEGG:Ajs_0732" /note="KEGG: ajs:Ajs_0732 pilus assembly protein, PilO" /codon_start=1 /transl_table=11 /product="pilus assembly protein, PilO" /protein_id="YP_004386730.1" /db_xref="GI:330823427" /db_xref="GeneID:10481819" /translation="MSMAKKKAPKFDFAKLQGDLQRQFQNLDPKDPSLWPVLPRTLLC LLIAAGMATFLWFFKLSEFQDELTAERSTEQTLRDDYQKKLVKAVSLDALKKQREQIQ QYVIQLEKQLPSKAEMSALLSDINQAGLGRSLQFELFRPGQVVVRDYYAELPISIRVV GKYHDVGAFASDVANLSRIVTLNNLSIAPATKDAGSNLTMEATARTFRYLDAEEIQAQ KAAAKGAKK" misc_feature 836271..836705 /locus_tag="Alide2_0798" /note="Pilus assembly protein, PilO; Region: PilO; cl01234" /db_xref="CDD:154281" gene 836753..837310 /locus_tag="Alide2_0799" /db_xref="GeneID:10481820" CDS 836753..837310 /locus_tag="Alide2_0799" /inference="protein motif:PFAM:PF04351" /note="PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP" /codon_start=1 /transl_table=11 /product="Pilus assembly protein PilP" /protein_id="YP_004386731.1" /db_xref="GI:330823428" /db_xref="InterPro:IPR007446" /db_xref="GeneID:10481820" /translation="MMRFRCRQLIVLAGVLILSGCGGSDEDELRQWMAELRATTKPRV TPLKEPKQFLPQDYFGDKGMDPFSPMKLTQALRRESSETVANASLIAPEMARRKEPLE AYPLDTVKMVGSLNKTGVPTALVSVDKLLYQVRTGNYLGQNYGKIVSISETNMRLREI VQDSTGDWVERMTTLDLQEGNEVRK" sig_peptide 836753..836827 /locus_tag="Alide2_0799" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.713) with cleavage site probability 0.341 at residue 25" misc_feature 836834..837286 /locus_tag="Alide2_0799" /note="Pilus assembly protein, PilP; Region: PilP; cl01235" /db_xref="CDD:154282" gene 837307..839448 /locus_tag="Alide2_0800" /db_xref="GeneID:10481821" CDS 837307..839448 /locus_tag="Alide2_0800" /inference="protein motif:TFAM:TIGR02515" /note="TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; SMART: Secretin/TonB, short N-terminal" /codon_start=1 /transl_table=11 /product="type IV pilus secretin PilQ" /protein_id="YP_004386732.1" /db_xref="GI:330823429" /db_xref="InterPro:IPR004846" /db_xref="InterPro:IPR005644" /db_xref="InterPro:IPR011662" /db_xref="InterPro:IPR013355" /db_xref="GeneID:10481821" /translation="MMRQKTRLRRHLWAVGVAILTALGGTAAHAGGTIESVTGFLQGG AEVLRIEFSEPQTDLPTGFSIQSPARIALDFPGVGNTSGRSLVEINQGNVRSANIVQA GERSRVVLNLKQPTSYRAELHGKTVMVLLDPVTGGARVPSASPTAFAESQNTDVLALK DLDFRRGTDGAGRIVVGLPSSQVGVDLQLQGKGLVVDFLRSSLPEGLRRRLDVSDFGT PVQTITATQQGERVRLAIESVGEWEHSAYQSDNQFVVEIRPKKVDLSKLTQGPNYTGE KLSLNFQNIEVRSLLQVIADFTNFNIVTSDTVTGALTLRLKDVPWDQALQIIMDAKGL GMRKSGTVLWIAPKDEIDERTKKDYEAALAIQKLEPLRTQAYQLNYAKAADMVIQLTT SASSGGGSGSATRFLSERGSAIAEPRTNQLFVTDTPAKLEEVRKLLLTLDVPVRQVMI EARIVEARDTFGRSLGVRLGGGDLRANRGGDGGYSIGGGNRAAWGTNYSNATNSAGFG DAVNVGGNFVNLPASLSNVTGVGSFALSIFNSAANRFLTLELSAMEADGQGKVVSSPR LITADQTKALIEQGTEYPYSVTAPNGATTIAFKKAVLKLEVVPQITPEGNIILDLDVN KDSRGESTTQGVAIDTKHIKTQVLVENGGTVVIGGIFELEETNQENKIPLLGDVPVMG NLFKSRTKESSKREMLVFITPKVITDRGPVR" sig_peptide 837307..837399 /locus_tag="Alide2_0800" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.996 at residue 31" misc_feature 838129..839424 /locus_tag="Alide2_0800" /note="type IV pilus secretin (or competence protein) PilQ; Region: IV_pilus_PilQ; TIGR02515" /db_xref="CDD:162898" misc_feature 838423..838647 /locus_tag="Alide2_0800" /note="Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958" /db_xref="CDD:146539" misc_feature 838960..839424 /locus_tag="Alide2_0800" /note="Bacterial type II and III secretion system protein; Region: Secretin; cl02829" /db_xref="CDD:164025" gene 839470..841017 /locus_tag="Alide2_0801" /db_xref="GeneID:10481822" CDS 839470..841017 /locus_tag="Alide2_0801" /inference="protein motif:PFAM:PF05345" /note="PFAM: Putative Ig; KEGG: eba:ebA2288 hypothetical protein" /codon_start=1 /transl_table=11 /product="Ig family protein" /protein_id="YP_004386733.1" /db_xref="GI:330823430" /db_xref="InterPro:IPR008009" /db_xref="GeneID:10481822" /translation="MRISKTIITSAVFAAVLSACGGGGGSGGESHSTYSITLRADKTQ LPLNVSSYPVGQGVYAPFSSTLYVEAQEGGRPIPGGEKIFGCNMAGGLDSGSLYYLDG DPEHEEEVDDGNGGKIKVPKAYRSITLSSNSGGNSFHFHAKNQAGTARIVCTVTDPRD KKEHSASVDITVGGTTGKPASVKMLVPSQQSYMGTQGNATRIPSTVVMQAFVQDDAIQ PVSSSSGANVQVRILPGTDAAVGARLVAGVLSGGVLQLPSIGGVAQFSLVSGAETGPI FLEFTADRYDNNVGNGIQDPITIIDQISVIEAQTDALAVSDEDLGQVTNTISYTHLLT AQGGLPPYTWSATGLPKGLSVDSGTGVLSGTPDDVERVYQATVTVRDKNKLADSGAIK LTLIGAVTPEDFAIGNCNLNQVCPLGNVPGGQNFAYAFTASVPGVTWSFAGLPSWLTS GTTGVTGFISGTPKACTNSVPAVPPAPATPADPGDTGTYTFFVTATKGVTNVTRQVSL TVTGSCS" sig_peptide 839470..839553 /locus_tag="Alide2_0801" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.686) with cleavage site probability 0.268 at residue 28" misc_feature 840496..840618 /locus_tag="Alide2_0801" /note="Putative Ig domain; Region: He_PIG; cl09256" /db_xref="CDD:158466" gene 841141..842259 /locus_tag="Alide2_0802" /db_xref="GeneID:10481823" CDS 841141..842259 /locus_tag="Alide2_0802" /EC_number="4.2.3.4" /inference="protein motif:HAMAP:MF_00110" /note="PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: dia:Dtpsy_0704 3-dehydroquinate synthase" /codon_start=1 /transl_table=11 /product="3-dehydroquinate synthase" /protein_id="YP_004386734.1" /db_xref="GI:330823431" /db_xref="InterPro:IPR002658" /db_xref="InterPro:IPR016037" /db_xref="GeneID:10481823" /translation="MKQSTPPIEGVRIVLGDRSYDIDIGSALLAGLAAHKALPSGTAA LIVTNDTVQPLYEKALVEALAGRYPVVHTVALPDGEEHKNWQTLNLIFDALLTHGCDR KVVLYALGGGVIGDMTGFAAACYMRGVPFVQVPTTLLAQVDSSVGGKTAINHPLGKNM IGAFYQPRLVVCDLATLDTLPARELAAGLAEVIKYGPIADMELFGWLEEHMDALLARE RQALAHAVRRSCEIKAAVVGADEREAGLRAILNFGHTFGHAIEAGMGYGVWLHGEGVA AGMVMAAELSRRLGLVDEAFTQRLTRLIARAGLPTRGPVLDAQDNAGRYLELMRVDKK AEGGEIRFVLIDGPGKAIMRTAPDALVREVIAQCCAAA" misc_feature 841195..842235 /locus_tag="Alide2_0802" /note="Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis; Region: DHQS; cd08195" /db_xref="CDD:173954" misc_feature order(841285..841287,841471..841479,841486..841488, 841495..841497,841546..841551,841555..841557, 841612..841614,841621..841623,841666..841668, 841690..841692,841711..841713,841723..841725, 841900..841902,841912..841914,841951..841953) /locus_tag="Alide2_0802" /note="active site" /db_xref="CDD:173954" misc_feature order(841393..841395,841414..841419,841498..841500, 841507..841509,841513..841521,841585..841590, 841615..841632) /locus_tag="Alide2_0802" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173954" misc_feature order(841711..841713,841900..841902,841951..841953) /locus_tag="Alide2_0802" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173954" gene 842317..843489 /locus_tag="Alide2_0803" /db_xref="GeneID:10481824" CDS 842317..843489 /locus_tag="Alide2_0803" /inference="protein motif:HAMAP:MF_01212" /note="SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: ajs:Ajs_0736 deoxyguanosinetriphosphate triphosphohydrolase-like protein; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, type 2; PFAM: Metal-dependent phosphohydrolase, HD subdomain" /codon_start=1 /transl_table=11 /product="deoxyguanosinetriphosphate triphosphohydrolase-like protein" /protein_id="YP_004386735.1" /db_xref="GI:330823432" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006261" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR023023" /db_xref="GeneID:10481824" /translation="MLDSALAPHACHPGRSRGRRHPEPPAPTRTEYQRDRDRIVHSTA FRRLVYKTQVFLNHEGDLFRTRLTHSLEVAQLGRSIARSLRLNEDLVEAVCLAHDLGH TPFGHAGQDVLNECMQDFGGFEHNLQSLRVVDRLEERYPQYDGINLTFETREGILKHC SRRNAELLEAREPGGVGRRFLLGRQPSLEAQLCNLADEIAYNAHDIDDGVRSGLITLA QLRDVPLFDRYRARAEAEYPHLAAPAGQRRLLAEAIRRMLSDQVYDVIDATRAALAAH APADVDAVRGMPALVEFSPDMRAQSQVLKRFLFRELYRHPQVVQTTDRARQVVRELFS IYQADPREMPPAQAASALEGDAQQRARTVADFIAGMTDRFAAREHERLTGRRLLGR" misc_feature 842332..843474 /locus_tag="Alide2_0803" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature 842359..843471 /locus_tag="Alide2_0803" /note="deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional; Region: PRK01096" /db_xref="CDD:179219" gene 843521..844141 /locus_tag="Alide2_0804" /db_xref="GeneID:10481825" CDS 843521..844141 /locus_tag="Alide2_0804" /inference="protein motif:PFAM:PF07209" /note="PFAM: Protein of unknown function DUF1415; KEGG: dia:Dtpsy_0706 protein of unknown function DUF1415" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386736.1" /db_xref="GI:330823433" /db_xref="InterPro:IPR009858" /db_xref="GeneID:10481825" /translation="MTTAPTPDQPSPSACDDAVVVQDTVRWLERAVIGLNLCPFAKSV HTKGQIHYVVSHATDTRALLEDLQRELEALAEASPDKRDTTLLMAPLTMPDFLDFNDF LELADELVEAMDLAGILQVASFHPRFQFEGTLADDVSNCTNRAPYPTLHLLREESIDR AVEAFPEAEEIFERNIEVLERLGAEGWKALDVGPRCPVDHGRKGGA" misc_feature 843578..844090 /locus_tag="Alide2_0804" /note="Protein of unknown function (DUF1415); Region: DUF1415; cl01301" /db_xref="CDD:154322" gene 844138..845010 /locus_tag="Alide2_0805" /db_xref="GeneID:10481826" CDS 844138..845010 /locus_tag="Alide2_0805" /inference="similar to AA sequence:KEGG:Dtpsy_0707" /note="KEGG: dia:Dtpsy_0707 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386737.1" /db_xref="GI:330823434" /db_xref="GeneID:10481826" /translation="MSRAPSRADAAQAAVLAELRPGQSVELLKELHILTREGRLNQDS RRKLKQVYHLYQFIEPLLQELAQDGHAPLLADHGAGKSYLGFILYDLFFKPLGRGEIY GIEWRAELVQRSRELAARLGFGRMRFLDMSVADAAETADLPERFDIVTALHACDTATD DAIAFGLRKHARFMVLVPCCQAEVAACLRQTKALSLSRTPLAELWRHPIHTRELGSQI TNVLRCLHLEASGYQVTVTELVGWEHSLKNELILARYTGQKKRSASERLAAILEEFGL AQALAGRFGLDQKE" misc_feature 844369..844662 /locus_tag="Alide2_0805" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(845126..846631) /locus_tag="Alide2_0806" /db_xref="GeneID:10481827" CDS complement(845126..846631) /locus_tag="Alide2_0806" /EC_number="1.2.1.27" /inference="protein motif:TFAM:TIGR01722" /note="TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: xtr:100496453 methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like; PFAM: Aldehyde dehydrogenase domain" /codon_start=1 /transl_table=11 /product="methylmalonate-semialdehyde dehydrogenase" /protein_id="YP_004386738.1" /db_xref="GI:330823435" /db_xref="GO:0004491" /db_xref="InterPro:IPR010061" /db_xref="InterPro:IPR015590" /db_xref="GeneID:10481827" /translation="MTQPTTLHHFIGGKPYPSKSAEWRDVTNPATQEVVARVPFATRE EVELAVANAQEAFQTWRETSLSARMRIMLKLQHLIREHQAEIAQLITREHGKTLPDAE GEVGRGLEVVEHACSITTLQLGEIAENAATGVDVYNLLQPLGVGAGITAFNFPVMLPC FMFPMAIACGNTFVLKPSEQDPSSTMRLVELAHEAGVPPGVLNVIHGGPEVADMLCDH PDIKALSFIGSTHVGTHIYRRASEAGKRVQSMMGAKNHCVVMPDAPKEHALNNLLGSA FGAAGQRCMANSVAVFVGAARDWLPELVAKSKAMKVGPGTDRSADLGPLVNPRAKQRV LGLIDSGVAQGAKLLLDGRACTVPGYEQGNFVGPTVFADVTDQMDIYQQEIFGPVLNV VCVDTLEDAIAFINRNPNGNGTSIFTSSGWAARKFQHDINVGQVGINVPIPVPVAYFS FTGSRASKLGDLGPNGKQAVQFWTQTKTVTARWYEDHGSSSDAVNTTITMK" misc_feature complement(845183..846613) /locus_tag="Alide2_0806" /note="Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085" /db_xref="CDD:143404" misc_feature complement(845195..846559) /locus_tag="Alide2_0806" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(order(845183..845188,845192..845209, 845228..845230,845270..845272,845276..845278, 845288..845290,845315..845326,845330..845332, 845336..845341,845348..845350,845357..845362, 845366..845371,845375..845377,845894..845896, 845900..845902,845909..845911,845918..845920, 845930..845932,846209..846211,846218..846220, 846227..846229,846242..846265,846290..846295, 846302..846304,846401..846403,846413..846415, 846422..846424,846434..846436,846440..846442)) /locus_tag="Alide2_0806" /note="tetrameric interface [polypeptide binding]; other site" /db_xref="CDD:143404" misc_feature complement(order(845396..845398,845474..845476, 845480..845482,845780..845782,845876..845884, 845936..845938,845945..845956,846005..846007, 846095..846097,846104..846106,846149..846151, 846173..846184)) /locus_tag="Alide2_0806" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143404" misc_feature complement(order(845780..845782,845789..845791, 845882..845884,846173..846175)) /locus_tag="Alide2_0806" /note="catalytic residues [active]" /db_xref="CDD:143404" gene complement(846646..847863) /locus_tag="Alide2_0807" /db_xref="GeneID:10481828" CDS complement(846646..847863) /locus_tag="Alide2_0807" /inference="similar to AA sequence:KEGG:Hsero_3068" /note="KEGG: hse:Hsero_3068 branched-chain amino acid ABC transporter periplasmic protein" /codon_start=1 /transl_table=11 /product="branched-chain amino acid ABC transporter periplasmic protein" /protein_id="YP_004386739.1" /db_xref="GI:330823436" /db_xref="GeneID:10481828" /translation="MRPMRHSLALAALALCAGAQAQISDDVVKIGVLTDMAGPYSGMG GAGSVVAAKMAIDDCLKAECKGMKIEVVSADHQNKADIAATKAREWLDRDKVDALADL TNSAGALAVQKLIKEKGGIAMYSGPATTRLTDEDCAENGFHWMFDTYSSASGAAAALT RNGDKSWFFVTVDYAFGHSLEKDASDMVKANGGTVLGSVRHPLNASDFSSFILQAQNS KAQVIGLANGAQDTVNAIKAAREFGIGTGKSGQKVASLLMFLTDVHSLGLKQAQGLMF SEGFYWDMDDKTRAFSTRFEKLHKGFKPTMVQAGVYSSVRHYLKSVAAAKTDDWKTGA QKMRELPIDDPVMRNASIRPDGRVIHDMYLFQVKAPGESKGPWDYYKTVSTIPAQIAF KPLAQSACPLVKK" sig_peptide complement(847798..847863) /locus_tag="Alide2_0807" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 22" misc_feature complement(846721..847800) /locus_tag="Alide2_0807" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(846769..847779) /locus_tag="Alide2_0807" /note="Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family; Region: PBP1_SBP_like_1; cd06327" /db_xref="CDD:107322" misc_feature complement(order(847093..847095,847180..847182, 847336..847338,847480..847488,847549..847557)) /locus_tag="Alide2_0807" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107322" gene 847997..848922 /locus_tag="Alide2_0808" /pseudo /db_xref="GeneID:10481829" gene 848989..849699 /locus_tag="Alide2_0809" /db_xref="GeneID:10481830" CDS 848989..849699 /locus_tag="Alide2_0809" /inference="protein motif:PFAM:PF01797" /note="PFAM: Transposase IS200-like; KEGG: vap:Vapar_1151 protein of unknown function DUF1568" /codon_start=1 /transl_table=11 /product="transposase IS200 family protein" /protein_id="YP_004386740.1" /db_xref="GI:330823437" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002686" /db_xref="GeneID:10481830" /translation="MARLPRLTLAGYPHHVIQRGNNRQAIFVDRQDFETMLALLAESA QKFRVAVHAYVLMDNHFHLLATPATADTLPQMMQAVGRSYVRYFNDRHGRSGTLWEGR YRSTLIETERYLLACMAYIDLNPVRAGMVAQPLAWPWSSHAHYLGQRSDKLVTPHTLY WALGNTPFAREAAYAELVQAGIAGAEQAALTDATLRGWALGGADFVAELQKKSPRRVT KARPGRPAAAAEDTTKLD" misc_feature 848989..849408 /locus_tag="Alide2_0809" /note="Transposase IS200 like; Region: Y1_Tnp; cl00848" /db_xref="CDD:154036" gene 849869..854602 /locus_tag="Alide2_0810" /db_xref="GeneID:10481831" CDS 849869..854602 /locus_tag="Alide2_0810" /EC_number="1.4.7.1" /inference="protein motif:PRIAM:1.4.7.1" /note="KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal" /codon_start=1 /transl_table=11 /product="glutamate synthase (ferredoxin)" /protein_id="YP_004386741.1" /db_xref="GI:330823438" /db_xref="InterPro:IPR000583" /db_xref="InterPro:IPR002489" /db_xref="InterPro:IPR002932" /db_xref="InterPro:IPR006982" /db_xref="GeneID:10481831" /translation="MTKAAEIQHLQQHGLYASSNEHDACGLGFVAHIKGVKRHDIVTG ALKILENLDHRGAVGADKLMGDGAGILIQIPDQLYREEMAGQGVELPPAGEYGVGMVF LPKEHASRLACEQELERAIKAEGQVLLGWRDVPVNRDMPMSPTVREKEPILRQVFIGR GADVIVQDALERKLYVIRKTASAAIQSLGLKHSKEYYVPSMSSRTVVYKGLLLAAQVG EYYLDLADERCVSAIGLVHQRFSTNTFPEWPLAHPYRYVAHNGEINTVRGNYNWMLAR EGVMASPVLGEDLKKLYPISFAGQSDTATFDNCLELLTMAGYPISQAVMMMIPEPWEQ HESMDERRRAFYEYHAAMIEPWDGPASIVFTDGRQIGATLDRNGLRPSRYVVTDDDLV ILASEAGVLPVPDSRVLRKWRLQPGKMLLIDLEQGRLIEDDELKANIVNTKPYKQWIE NLRIKLDSVQVPAGLQAPAPSALPLLDRQQAFGFTQEDIKFLLAPMAANGEEGIGSMG NDSPLAVLSERSKPLYNYFRQMFAQVTNPPIDPIREAIVMSLVSFVGPKPNLLDINQV NPPMRLELHQPILDFEGMAKLRQIEQFTHGKFKSATIDITYPLAWGKQGVEAKLASLC AQAVDEIKGGANILIISDRNLGATQVAIPALLALSAIHQHLVREGLRTTTGLVVETGT AREVHHFAVLAGYGAEAVHPYLALETLVDMHQDLPGALSADKAIYNYIKAVGKGLSKI MSKMGVSTYMSYCGAQLFECVGLNSDTVAKYFTGTASRVEGIGVFEIAEEAIRTHVAA FGDDPVLETMLETGGEYAWRARGEEHMWTPDAIAKLQHATRGGNFSTYKEYAQIINDQ SRRHMTLRGLFEFKFDPAKAIPIDEVEPAKEIVKRFATGAMSLGSISTEAHATLAVAM NRIGGKSNTGEGGEDPARYRKELKGIPIVQGETLASVIGADKVAADIALQDGDSLRSR IKQVASGRFGVTAEYLSSSDQIQIKMAQGAKPGEGGQLPGGKVSEYIGQLRYSVPGVG LISPPPHHDIYSIEDLAQLIHDLKNVAPHAGISVKLVSEVGVGTIAAGVAKCKSDHVV IAGHDGGTGASPWSSIKHAGSPWEIGLAETQQTLVLNRLRGRIRVQADGQMKTGRDVV IGALLGADEFGFATAPLVVEGCIMMRKCHLNTCPVGVATQDPVLRAKFSGKPEHVVNY FFFVAEEARQIMAQLGVRTFDELIGRTDLLDTRKGLAHWKAQGLDFSRLFAQPQAPSD VARHHVEAQEHGLEKALDVKLIERCQPAIQHGENVRLMEVARNVNRSVGAMLSGAVTK AHPEGLPDDTIRIHFEGTGGQSFGAFLCKGITLNLTGEANDYTGKGLSGGRIIVRPSH EFRGESTANTIVGNTVMFGATSGEAFFAGVAGERFAVRLSGATAVVEGVGDHGCEYMT GGTVVVLGRTGRNFAAGMSGGVAYVYDEDGRFDGRCNLSMVALERILPADEQVASVDP GHWHRGQTDEEQLKKLLEAHSRYTGSRRARDLLDNWAAARSRFVKVFPTEYKRALVEM YERKVLEEQATPAQAASKNEAVAAK" misc_feature 849905..854494 /locus_tag="Alide2_0810" /note="glutamate synthase subunit alpha; Provisional; Region: gltB; PRK11750" /db_xref="CDD:183297" misc_feature 849941..851197 /locus_tag="Alide2_0810" /note="Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-...; Region: GltS; cd00713" /db_xref="CDD:48477" misc_feature order(849941..849943,850031..850033,850583..850585, 850646..850654,850772..850774) /locus_tag="Alide2_0810" /note="active site" /db_xref="CDD:48477" misc_feature order(850199..850201,850208..850210,850220..850222, 850259..850261,850265..850267,850280..850282, 850316..850318,850328..850330,850601..850603) /locus_tag="Alide2_0810" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48477" misc_feature 851300..852163 /locus_tag="Alide2_0810" /note="Glutamate synthase central domain; Region: Glu_syn_central; pfam04898" /db_xref="CDD:147192" misc_feature 852350..853570 /locus_tag="Alide2_0810" /note="Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant...; Region: GltS_FMN; cd02808" /db_xref="CDD:73370" misc_feature order(852551..852562,852641..852643,852791..852793, 852857..852859,852875..852877,852935..852937, 853061..853063,853151..853159,853274..853276, 853280..853282,853343..853348,853370..853372, 853388..853390,853403..853405) /locus_tag="Alide2_0810" /note="active site" /db_xref="CDD:73370" misc_feature order(852551..852562,852641..852643,852791..852793, 852857..852859,853061..853063,853151..853156, 853274..853276,853280..853282,853343..853348) /locus_tag="Alide2_0810" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature order(852875..852877,852935..852937,853154..853159) /locus_tag="Alide2_0810" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature order(853370..853372,853388..853390,853403..853405) /locus_tag="Alide2_0810" /note="3Fe-4S cluster binding site [ion binding]; other site" /db_xref="CDD:73370" misc_feature 853703..854497 /locus_tag="Alide2_0810" /note="gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the...; Region: gltB_C; cd00982" /db_xref="CDD:29611" misc_feature order(853802..853807,853814..853816,853823..853828, 853880..853882,853889..853894,853904..853906, 853940..853948,853961..853963,853970..853972, 854027..854038,854045..854047,854054..854056, 854063..854065,854090..854104,854111..854116, 854120..854122,854147..854158,854165..854170, 854174..854176,854213..854215,854222..854224, 854231..854233,854276..854287) /locus_tag="Alide2_0810" /note="domain interface; other site" /db_xref="CDD:29611" gene 854643..856121 /locus_tag="Alide2_0811" /db_xref="GeneID:10481832" CDS 854643..856121 /locus_tag="Alide2_0811" /EC_number="1.4.1.14" /inference="protein motif:TFAM:TIGR01317" /note="TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; KEGG: dia:Dtpsy_0710 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region" /codon_start=1 /transl_table=11 /product="glutamate synthase, NADH/NADPH, small subunit" /protein_id="YP_004386742.1" /db_xref="GI:330823439" /db_xref="GO:0050660" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR006005" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10481832" /translation="MGKTTGFLEYERIEEGYPAPAERVKHYKEFVIGLSSEQAKIQAA RCMDCGTPFCNNGCPVNNIIPDFNDLVYHQDWRSASTVLHSTNNFPEFTGRICPAPCE AACTLNINSDAVGIKSIEHAIVDRAWAEGWVQPQLPRHKTGRKVAIVGAGPAGLAAAQ QLARAGHDVTLFEKNDRVGGLLRYGIPDFKLDKGHIDKRVRQLVAEGVQIRTGVFVGS EKDGLGQGSKVTNWSTETVTPAQLQAEFDAVLLTGGAEQSRDLPVPGRDLAGIHFAME FLPQQNKVNAGDKLKGQIRADGKHVIVIGGGDTGSDCVGTSNRHGAKSVTQFEVMPMP PEQENKPLVWPYWPLKLRTSSSHDEGCVREFAISTKEFTGHKGKVTGLKTVQVEFKDG RFSEVPGTEKEYPADLVLLAMGFVSPVAAVLDAFGVDKDARGNARASTDFIGGYATSV PKVFAAGDMRRGQSLVVWAIREGRQAARAVDEFLMGASDLPR" misc_feature 854643..856115 /locus_tag="Alide2_0811" /note="glutamate synthase subunit beta; Reviewed; Region: gltD; PRK12810" /db_xref="CDD:183763" misc_feature 855075..>855260 /locus_tag="Alide2_0811" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 856326..857123 /locus_tag="Alide2_0812" /db_xref="GeneID:10481833" CDS 856326..857123 /locus_tag="Alide2_0812" /inference="protein motif:PFAM:PF00497" /note="KEGG: ajs:Ajs_0743 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3" /codon_start=1 /transl_table=11 /product="ABC transporter periplasmic subunit" /protein_id="YP_004386743.1" /db_xref="GI:330823440" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10481833" /translation="MKKIAAVALLSLGAVLAGCSKQENAPAPAAAPAPAAVTQIVVGL DDNFPPMGFRDEKNELVGFDIDMAKEAAKRLGLQVEFKPIDWSAKEAELSGKRVDVLW NGLTITEERKQNIAFTAPYMENHQIIVVPAGSAIKAKADLAGKVVGAQEGSSAVDAIK KEDAVFKSFKEFKTFGDNVTALMDLSTGRLEAVVVDEVVGRYYVAKKPDQYEVLDDNF GTEEYGVGLRKDDTELHGKLDKALADMKADGAAAKIAEQWFGKNIIK" sig_peptide 856326..856394 /locus_tag="Alide2_0812" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.465 at residue 23" misc_feature 856443..857108 /locus_tag="Alide2_0812" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature 856443..857027 /locus_tag="Alide2_0812" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(856467..856469,856581..856583,856656..856658, 856785..856787,856911..856913) /locus_tag="Alide2_0812" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(856860..856862,856872..856874,856890..856892) /locus_tag="Alide2_0812" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 856980..856997 /locus_tag="Alide2_0812" /note="hinge residues; other site" /db_xref="CDD:29040" gene 857185..857841 /locus_tag="Alide2_0813" /db_xref="GeneID:10481834" CDS 857185..857841 /locus_tag="Alide2_0813" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: ajs:Ajs_0744 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter inner membrane subunit" /protein_id="YP_004386744.1" /db_xref="GI:330823441" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10481834" /translation="MMDYVLSLLGPLAQGATVTLKLFVITLALAVPLGLVLALARLSR WKALSGAVNGYIWLMRGTPLMLQMLFIYFALPFVPVVGVRLPDFPAAVTAFALNYAAY FAEIFRAGIQSVDRGQYEAAKVLGMSYGQTMRRIVLPQMVRSILPPMSNETITLVKDT SLIYVLALNDLLRAARGIVQRDFTTTPFIVAAAFYLLMTLVLTWGFQRLEQRYAKYDQ " misc_feature 857212..857829 /locus_tag="Alide2_0813" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature 857311..857796 /locus_tag="Alide2_0813" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(857338..857349,857353..857382,857389..857394, 857398..857400,857473..857478,857482..857484, 857488..857490,857497..857502,857506..857508, 857518..857523,857530..857532,857581..857583, 857623..857628,857635..857637,857656..857667, 857674..857679,857716..857721,857746..857751, 857758..857763,857767..857772,857779..857784, 857791..857796) /locus_tag="Alide2_0813" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(857356..857400,857656..857673) /locus_tag="Alide2_0813" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(857398..857400,857458..857460,857674..857676, 857710..857712,857719..857721,857746..857748) /locus_tag="Alide2_0813" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(857533..857571,857587..857592,857602..857604) /locus_tag="Alide2_0813" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 857822..858601 /locus_tag="Alide2_0814" /db_xref="GeneID:10481835" CDS 857822..858601 /locus_tag="Alide2_0814" /EC_number="3.6.3.28" /inference="protein motif:PRIAM:3.6.3.28" /note="PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0713 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="phosphonate-transporting ATPase" /protein_id="YP_004386745.1" /db_xref="GI:330823442" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481835" /translation="MPNTTSDVPMIEARGVVKRFGHNVVLRGVSLSVARGEVVAVIGP SGSGKSTFLRCLNHLETIDGGHVAIEGEPLATTDARGHCRYVPDAEVRRICAKTGMVF QHFNLFPHLTVLENLIEAPMVVQGLPRAETVARAEKLLDKVGLSQKRDNYPARLSGGQ KQRVAIARALAMQPDIMLFDEPTSALDPELTGEVLRTMRELAEERMTMLVVTHEMGFA REVAHRVAFMDQGELITARPAQEFFADPGHERARAFLEHML" misc_feature 857846..858598 /locus_tag="Alide2_0814" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature 857852..858520 /locus_tag="Alide2_0814" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 857948..857971 /locus_tag="Alide2_0814" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(857957..857962,857966..857974,858128..858130, 858359..858364,858458..858460) /locus_tag="Alide2_0814" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 858119..858130 /locus_tag="Alide2_0814" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 858287..858316 /locus_tag="Alide2_0814" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 858347..858364 /locus_tag="Alide2_0814" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 858371..858382 /locus_tag="Alide2_0814" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 858446..858466 /locus_tag="Alide2_0814" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene 858625..859929 /locus_tag="Alide2_0815" /db_xref="GeneID:10481836" CDS 858625..859929 /locus_tag="Alide2_0815" /inference="similar to AA sequence:KEGG:Veis_4017" /note="KEGG: vei:Veis_4017 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386746.1" /db_xref="GI:330823443" /db_xref="GeneID:10481836" /translation="MNLAPLPAQHAQRVLLHNEVHARPPEAMAAPLAISHIVMLADAA GRDASRAHLAALLRDHHLAPPDAHTTHLRADLGAFRIRWELHTEFVTWTFTVVPVGGI HAGEGRAPAAALEAVPRDWLALLPGECLCALHLWVAAGGGWSATPAQRGWLREESLVA SAVAEGQGEVYTDFAIHADGFSRMLLVAGALSHQRLGRLVQQLLEIETYRMAALLGLP AAREAGAALASAECELAALAEAIRSSRRDAEPALLDRLTRLAGQVEGQYAATHSRFSA SSAYFELVDRRIQDIAESRIAGLQTIGEFMERRLSPARSTCAWAARRQNALSERVSRM SSLLRTRVEIEQQQNNQALLVAMNRRGDLQLKLQSTVEGLSVAAITYYIVGLVSYLAK GAQKIGWPFSPESTAAVAIPLVAASVWWSLRRLHHRMFGEAH" misc_feature 858643..859911 /locus_tag="Alide2_0815" /note="Protein of unknown function (DUF3422); Region: DUF3422; cl02073" /db_xref="CDD:154733" gene complement(860031..860990) /locus_tag="Alide2_0816" /db_xref="GeneID:10481837" CDS complement(860031..860990) /locus_tag="Alide2_0816" /EC_number="2.5.1.16" /inference="protein motif:HAMAP:MF_00198" /note="HAMAP: Spermine synthase; KEGG: ajs:Ajs_0746 spermidine synthase; PFAM: Spermine synthase" /codon_start=1 /transl_table=11 /product="spermidine synthase" /protein_id="YP_004386747.1" /db_xref="GI:330823444" /db_xref="InterPro:IPR001045" /db_xref="GeneID:10481837" /translation="MSGTPAAQATLYVAERLNADFGFYLSCGRPLAERRSAWQHIEVF DNAQFGRVMRIDGCFMTSERDEFFYHEPMVHLPAIAHPGVRTALVVGGGDGGAAEELL KLPGIERVVLAELDGDVVAMAREWLGAIHRGAFDDPRLQLRLGDARDLLVQGGERFDQ IVLDLTDPFGPAVELYTVEFYAACRRALNPGGVLSLHLGSPIHLPETMTRIAASVRAV FPVFRPYLQYVPLYGTLWCMAMASNDTDPALLGASEVDARIAARGLHGLQLYNGAMHQ ALLAQPNFVRALLARPTRPLRSGDVLDEVRDPSELPPVTVTTG" misc_feature complement(860136..860969) /locus_tag="Alide2_0816" /note="spermidine synthase; Provisional; Region: PRK00811" /db_xref="CDD:179134" misc_feature complement(860136..860960) /locus_tag="Alide2_0816" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(860990..861400) /locus_tag="Alide2_0817" /db_xref="GeneID:10481838" CDS complement(860990..861400) /locus_tag="Alide2_0817" /inference="protein motif:TFAM:TIGR03330" /note="KEGG: dia:Dtpsy_0715 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine decarboxylase proenzyme" /protein_id="YP_004386748.1" /db_xref="GI:330823445" /db_xref="GO:0004014" /db_xref="InterPro:IPR003826" /db_xref="InterPro:IPR017716" /db_xref="GeneID:10481838" /translation="MKNLQSVVPIAPAATPRKATGLHLIGDLYGCLCDSRLMLDAEYL ETFCKERVAAAGLTAVGSLFHSFGEGGGVTGVVVLAESHLSIHTWPEAGYVTLDVYVC NYTANNRPKAQKLFDDLQAAFNPKDPHLHRVDRA" misc_feature complement(860996..861334) /locus_tag="Alide2_0817" /note="S-adenosylmethionine decarboxylase; Region: AdoMet_dc; cl00687" /db_xref="CDD:186145" gene 861767..862615 /locus_tag="Alide2_0818" /db_xref="GeneID:10481839" CDS 861767..862615 /locus_tag="Alide2_0818" /EC_number="3.6.3.25" /inference="protein motif:PRIAM:3.6.3.25" /note="PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0716 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="sulfate-transporting ATPase" /protein_id="YP_004386749.1" /db_xref="GI:330823446" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481839" /translation="MQPQSPASSDALVELCNVTFGYGERVILRDLSLTVPRGKVTALM GASGGGKTTVLRLIGGQQRAQQGEVLVAGQDVGRMDTAQLYAARRRMGMLFQFGALFT DMSVFENVAFPLREHTDLPEELIRDIVLMKLNAVGLRGARDLMPSQISGGMARRVALA RAIALDPELIMYDEPFAGLDPISLGTAAQLIRQLGDAMGLTTIVVSHDLEETFRLADH VIILGPGTVAAQGTPEEVRASTDPLVHQFVHALPTGPVPFHYPGPSVAQDFGPVGAQH QDGGTP" misc_feature 861785..862558 /locus_tag="Alide2_0818" /note="ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127" /db_xref="CDD:31324" misc_feature 861803..862507 /locus_tag="Alide2_0818" /note="ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex...; Region: ABC_Org_Solvent_Resistant; cd03261" /db_xref="CDD:73020" misc_feature 861899..861922 /locus_tag="Alide2_0818" /note="Walker A/P-loop; other site" /db_xref="CDD:73020" misc_feature order(861908..861913,861917..861925,862052..862054, 862283..862288,862385..862387) /locus_tag="Alide2_0818" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73020" misc_feature 862043..862054 /locus_tag="Alide2_0818" /note="Q-loop/lid; other site" /db_xref="CDD:73020" misc_feature 862211..862240 /locus_tag="Alide2_0818" /note="ABC transporter signature motif; other site" /db_xref="CDD:73020" misc_feature 862271..862288 /locus_tag="Alide2_0818" /note="Walker B; other site" /db_xref="CDD:73020" misc_feature 862295..862306 /locus_tag="Alide2_0818" /note="D-loop; other site" /db_xref="CDD:73020" misc_feature 862373..862393 /locus_tag="Alide2_0818" /note="H-loop/switch region; other site" /db_xref="CDD:73020" gene 862612..863394 /locus_tag="Alide2_0819" /db_xref="GeneID:10481840" CDS 862612..863394 /locus_tag="Alide2_0819" /inference="protein motif:TFAM:TIGR00056" /note="KEGG: dia:Dtpsy_0717 protein of unknown function DUF140; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386750.1" /db_xref="GI:330823447" /db_xref="InterPro:IPR003453" /db_xref="GeneID:10481840" /translation="MSWWRPSHVGYAVRSKLADLGMGARLFVRLVGLFGTAMRRFGLV RDQVHFLGNYSLSIIAMSGLFVGFVLALQGYNVLQLYGSANSLGLVVTLGLVRELGPV VTALLFAGRAGTSLTAEIGLMRAGEQLSAMEMMAVDPVQRILAPRFWGGVIAMPLLAA VFSAVGVIGGWLVGVVLIGVDGGAFWGQMQSSVDVWKDVGNGVVKSVVFGVAVTFIAV LQGYMAKPTPEGVSRATTRTVVMASLTVLGLDFVLTALMFSI" misc_feature 862735..863382 /locus_tag="Alide2_0819" /note="Domain of unknown function DUF140; Region: DUF140; cl00510" /db_xref="CDD:186046" gene 863429..863917 /locus_tag="Alide2_0820" /db_xref="GeneID:10481841" CDS 863429..863917 /locus_tag="Alide2_0820" /inference="protein motif:PFAM:PF02470" /note="PFAM: Mammalian cell entry-related; KEGG: dia:Dtpsy_0718 mammalian cell entry related domain protein" /codon_start=1 /transl_table=11 /product="Mammalian cell entry related domain-containing protein" /protein_id="YP_004386751.1" /db_xref="GI:330823448" /db_xref="InterPro:IPR003399" /db_xref="GeneID:10481841" /translation="MQHSKNDIWVGLFVLLGGAALVFLALQSANLLQLNFRSGYVITA RFDNIGGLKPKAAVRSAGVVVGRVQSISFDDKTYQARVALEIEKRYAFPKDSSLKILT SGLLGDQYIGIEPGAEEDNLADGSMVTNTQSAVVLENLIGQFLYGKAEQGAAPAGGGG KK" sig_peptide 863429..863515 /locus_tag="Alide2_0820" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.885) with cleavage site probability 0.651 at residue 29" misc_feature 863543..863776 /locus_tag="Alide2_0820" /note="mce related protein; Region: MCE; cl03606" /db_xref="CDD:186584" gene 863914..864654 /locus_tag="Alide2_0821" /db_xref="GeneID:10481842" CDS 863914..864654 /locus_tag="Alide2_0821" /inference="protein motif:PFAM:PF04333" /note="PFAM: VacJ-like lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein" /codon_start=1 /transl_table=11 /product="VacJ family lipoprotein" /protein_id="YP_004386752.1" /db_xref="GI:330823449" /db_xref="InterPro:IPR007428" /db_xref="GeneID:10481842" /translation="MTTDSRSRTRAARWAALLLGAALATGCATGPNANPADPFEPYNR GMTRFNENVDKAVLKPVATVYRDVIPRPVRTGVGNFFANLGDAWSFVNNLLQARGLEA YESLVRFSTNTVFGLGGLLDIASEAGIERHKQDFGLTLGRWGVPTGPYLVLPLLGPST VRDTAALPVDYFVGDPVGYVNDVPVRNSLYGLRFVDKRASLLHATSVLDEAALDSYSF TRDVYLKLRGGAKAGADDEEGGKLPDDY" sig_peptide 863914..864015 /locus_tag="Alide2_0821" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.973 at residue 34" misc_feature 864004..864594 /locus_tag="Alide2_0821" /note="VacJ like lipoprotein; Region: VacJ; cl01073" /db_xref="CDD:186319" gene 864772..865434 /locus_tag="Alide2_0822" /db_xref="GeneID:10481843" CDS 864772..865434 /locus_tag="Alide2_0822" /inference="protein motif:PFAM:PF05494" /note="PFAM: Toluene tolerance Ttg2; KEGG: dia:Dtpsy_0720 toluene tolerance family protein" /codon_start=1 /transl_table=11 /product="toluene tolerance family protein" /protein_id="YP_004386753.1" /db_xref="GI:330823450" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR008869" /db_xref="GeneID:10481843" /translation="MTNRRTLMQSAAALVVAAGLPWHQAALAADEAPDALIKRLSADV LETVRNDKSIKSGDVDKIMVLVNKAILPHVNFRRMTAAAVGPAWRSATPEQQKRLQDE FKTLLVRTYSGALSQVTDQTIVVKPLRAAPGDTDVLVRTEIRGRGNPVQLDYRLEKTP GEGGGWKIYNLNVLGVWLVDTYRPQFAQEINAKGVDGLIETLAARNKANAGTNAGVAG AK" sig_peptide 864772..864858 /locus_tag="Alide2_0822" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.987 at residue 29" misc_feature 864880..865386 /locus_tag="Alide2_0822" /note="Toluene tolerance, Ttg2; Region: Tol_Tol_Ttg2; pfam05494" /db_xref="CDD:191284" misc_feature 864880..865386 /locus_tag="Alide2_0822" /note="ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2D; cl01074" /db_xref="CDD:186320" gene 865452..865724 /locus_tag="Alide2_0823" /db_xref="GeneID:10481844" CDS 865452..865724 /locus_tag="Alide2_0823" /inference="similar to AA sequence:KEGG:Dtpsy_0721" /note="KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS" /codon_start=1 /transl_table=11 /product="sulfate transporter/antisigma-factor antagonist STAS" /protein_id="YP_004386754.1" /db_xref="GI:330823451" /db_xref="GeneID:10481844" /translation="MLVLPAELTHRQASVSLRMLLQALKAQGEQQVVVDAGALAAFDS SALAVLLECRRVAVSEGKGFMVKALPPALASLAGLYGVQELLPSLG" misc_feature 865455..>865649 /locus_tag="Alide2_0823" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors; Region: STAS; cl00604" /db_xref="CDD:153881" gene 865788..867083 /locus_tag="Alide2_0824" /db_xref="GeneID:10481845" CDS 865788..867083 /locus_tag="Alide2_0824" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-4; KEGG: gpb:HDN1F_11000 hypothetical protein; SMART: Diguanylate cyclase, predicted; PAS; PAC motif" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor-containing diguanylate cyclase" /protein_id="YP_004386755.1" /db_xref="GI:330823452" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR013656" /db_xref="GeneID:10481845" /translation="MSKPEPGAAPSGPAPDPFRQLLDEVGAFVYTIDLQGCYTYANRL VLELLGHPLDYVLGKDISHFFGEKSNQVIRENDARVLRGGETIAREETNLIKATGELR TYWSMKKPLRDAAGNIVGMLGISHDITEKKRLEDRVRKQKELLDTVLDNVDALVYMKD ANRRFVYANQHMADVLGLPVERIVGSLDTDLLPRDLADRFWAMDQKIFASGQRQSSEE AVVDACGRLRHYWRVVVPLPAPDGTPAVIGLSTDITELHELKEELRRQASTDGLTGLA NRRSFCERAGHEFARSRRHGTPLSLIAIDIDHFKRFNDSYGHPLGDRVLCAFAACCQS MLREADLCARTGGEEFCILLPDTGLDDARRIAERIRVSAGSLCVDGQSPQLRISASFG VASLESGDQAFDTLFSRADRALYCAKQQGRDCIFAWPGG" misc_feature 865839..866033 /locus_tag="Alide2_0824" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 865851..866186 /locus_tag="Alide2_0824" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature 866214..866414 /locus_tag="Alide2_0824" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 866232..866561 /locus_tag="Alide2_0824" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature 866592..867062 /locus_tag="Alide2_0824" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(866700..866702,866829..866831) /locus_tag="Alide2_0824" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(866715..866717,866724..866729,866739..866741, 866751..866753,866817..866819,866823..866834) /locus_tag="Alide2_0824" /note="active site" /db_xref="CDD:143635" misc_feature order(866805..866807,866889..866891) /locus_tag="Alide2_0824" /note="I-site; other site" /db_xref="CDD:143635" gene 867165..868085 /locus_tag="Alide2_0825" /db_xref="GeneID:10481846" CDS 867165..868085 /locus_tag="Alide2_0825" /EC_number="3.6.3.31" /inference="protein motif:PRIAM:3.6.3.31" /note="PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0722 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="polyamine-transporting ATPase" /protein_id="YP_004386756.1" /db_xref="GI:330823453" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481846" /translation="MTAVSFQSVSKTFPTPRGPFQALHGVSLDIEEGEFFGLLGPNGA GKTTLISILAGLSRATQGRVTVLGHDVQADFARARQCLGVVPQELVFDPFFNVRETLR LQSGYFGVKNNDAWIDELLESLGLADKATANMRQLSGGMKRRVLVAQALVHKPPIIVL DEPTAGVDVELRQTLWQFIARLNKQGHTVLLTTHYLEEAEALCGRIAMLKNGRVVALD STSELLQSANASVLQFKTDAPLPAALARLARVTGRIVQLPAHDAAEIEHHLAALREAG VASEDVEIRRADLEDVFIKVMGSEAAEAVA" misc_feature 867165..868058 /locus_tag="Alide2_0825" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:31326" misc_feature 867174..867833 /locus_tag="Alide2_0825" /note="The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency...; Region: ABC_subfamily_A; cd03263" /db_xref="CDD:73022" misc_feature 867282..867305 /locus_tag="Alide2_0825" /note="Walker A/P-loop; other site" /db_xref="CDD:73022" misc_feature order(867291..867296,867300..867308,867423..867425, 867645..867650,867744..867746) /locus_tag="Alide2_0825" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73022" misc_feature 867414..867425 /locus_tag="Alide2_0825" /note="Q-loop/lid; other site" /db_xref="CDD:73022" misc_feature 867573..867602 /locus_tag="Alide2_0825" /note="ABC transporter signature motif; other site" /db_xref="CDD:73022" misc_feature 867633..867650 /locus_tag="Alide2_0825" /note="Walker B; other site" /db_xref="CDD:73022" misc_feature 867657..867668 /locus_tag="Alide2_0825" /note="D-loop; other site" /db_xref="CDD:73022" misc_feature 867732..867752 /locus_tag="Alide2_0825" /note="H-loop/switch region; other site" /db_xref="CDD:73022" gene 868082..868837 /locus_tag="Alide2_0826" /db_xref="GeneID:10481847" CDS 868082..868837 /locus_tag="Alide2_0826" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: aav:Aave_1020 ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_004386757.1" /db_xref="GI:330823454" /db_xref="InterPro:IPR013525" /db_xref="GeneID:10481847" /translation="MTGWQTLFYKEVLRFWKVAFQTVAAPVLTAVLYLLIFSHVLEDR VQVYGQLSYTAFLVPGLVMMSMLQNSFANSSSSLIQSKIMGNLVFVLLTPLSHWAWFT AYVGSSVLRGLLVGLGVFAVTLAFARPAFSALPWVFVFALLGAALLATLGVIAGLWAD KFDQMASFQNFLIMPMTFLSGVFYSIHSLPPFWQHASRFNPFFYMIDGFRYGFFGVSD VSPWLSLAIVGGAWLAVSFLALRLLRTGYKIRN" misc_feature 868082..868834 /locus_tag="Alide2_0826" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene 868851..869099 /locus_tag="Alide2_0827" /db_xref="GeneID:10481848" CDS 868851..869099 /locus_tag="Alide2_0827" /inference="protein motif:PFAM:PF01722" /note="PFAM: BolA protein; KEGG: dia:Dtpsy_0724 BolA family protein" /codon_start=1 /transl_table=11 /product="BolA family protein" /protein_id="YP_004386758.1" /db_xref="GI:330823455" /db_xref="InterPro:IPR002634" /db_xref="GeneID:10481848" /translation="MTADQIKDIISAAMACDYITLEGDGRHWYAVIVSAEFEGKRPIQ RHQRVYATLGDKMQRDEVHALSMKTFTPAEWAAARQQA" misc_feature 868851..869090 /locus_tag="Alide2_0827" /note="BolA-like protein; Region: BolA; cl00386" /db_xref="CDD:185958" gene 869124..870398 /locus_tag="Alide2_0828" /db_xref="GeneID:10481849" CDS 869124..870398 /locus_tag="Alide2_0828" /EC_number="2.5.1.7" /inference="protein motif:HAMAP:MF_00111" /note="PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: ctt:CtCNB1_0710 UDP-N-acetylglucosamine" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 1-carboxyvinyltransferase" /protein_id="YP_004386759.1" /db_xref="GI:330823456" /db_xref="InterPro:IPR001986" /db_xref="InterPro:IPR005750" /db_xref="GeneID:10481849" /translation="MDKLLVRGGRALRGEVVISGAKNAALPEMCAALLTDEPVHLINV PRLHDVRTMRRLLDNMGVKTETHGERGGMSFVAPDALSPEAPYELVKTMRASVLALGP LLARFGEATISLPGGCAIGSRPVDQHIKGLQAMGAHIVVEHGYMIAKLPAGQQRLRGA RITTDMITVTGTENLLMAATLAEGETVLENAAQEPEVTDLAEMLIAMGARIEGHGTSR IRIQGVERLHGCTHQVVADRIEAGTFLCAVAAAGGEAFLRHARADHLDAVIDKLLEAG ARVAAEGDGIRISSPGGAELKAQSFRTTEYPGFPTDMQAQFMALNVVAQGTAMVAETI FENRFMHVNELARLGAQIAIDGRVATVTGGARLSGATVMATDLRASASLVIAGLIASG ETLVDRIYHLDRGYDAMEAKLRGLGADIERIQ" misc_feature 869124..870392 /locus_tag="Alide2_0828" /note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated; Region: PRK09369" /db_xref="CDD:181804" misc_feature 869157..870371 /locus_tag="Alide2_0828" /note="UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555" /db_xref="CDD:30128" misc_feature order(869175..869186,869823..869834) /locus_tag="Alide2_0828" /note="hinge; other site" /db_xref="CDD:30128" misc_feature order(869190..869192,869403..869405,869415..869417, 869490..869507,869619..869621,869628..869633, 870057..870059) /locus_tag="Alide2_0828" /note="active site" /db_xref="CDD:30128" gene 870395..871045 /locus_tag="Alide2_0829" /db_xref="GeneID:10481850" CDS 870395..871045 /locus_tag="Alide2_0829" /EC_number="2.4.2.17" /inference="protein motif:TFAM:TIGR00070" /note="TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; KEGG: dia:Dtpsy_0726 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase, catalytic domain" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase" /protein_id="YP_004386760.1" /db_xref="GI:330823457" /db_xref="GO:0003879" /db_xref="InterPro:IPR013820" /db_xref="GeneID:10481850" /translation="MTQQITLALSKGRIFEETLPLLAAAGIEVLEDPEKSRKLILPTS RPEVRVVLVRATDVPTYVQYGGADLGVAGKDSLIEHGGQGLFRPLDLQIAKCRVSVAV RAGFDYRAAVTQGSRLKVATKYTSIARDFFSAKGVHVDMIKLYGSMELAPLTGLADAI VDLVSTGNTLKANNLVEVEQIMDISSHLVVNQAALKLKQAPLKRIIDAFASAVPQG" misc_feature 870398..871042 /locus_tag="Alide2_0829" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 871050..872366 /locus_tag="Alide2_0830" /db_xref="GeneID:10481851" CDS 871050..872366 /locus_tag="Alide2_0830" /EC_number="1.1.1.23" /inference="protein motif:TFAM:TIGR00069" /note="TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; KEGG: aav:Aave_1024 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type" /codon_start=1 /transl_table=11 /product="histidinol dehydrogenase" /protein_id="YP_004386761.1" /db_xref="GI:330823458" /db_xref="GO:0004399" /db_xref="GO:0008270" /db_xref="GO:0051287" /db_xref="InterPro:IPR012131" /db_xref="GeneID:10481851" /translation="MQFVAAPARLSTVSDAFEADFAARLHWSADQDAAIEERVAAILA DVQQRGDAAVLDYTRRFDGLQADGVAALELTQAELKAAYDGLPDAQRQALSAAAARVR SYHEAQKKACGESWSYRDEDGTLLGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAHV AGVPEIIMVVPTPRGEKNPLVLAAACVAGVTRAFTIGGAQAVAALAHGTATIPKVDKI TGPGNAYVASAKKRVFGQVGIDMIAGPSEILVLADGSTPPDWVAMDLFSQAEHDELAQ SILLCPDAAYIDAVQREIDRLLPQMPRAEIIARSLTGRGALIHTRSMEEACEISNRIA PEHLEVSSRDPHKWEPLLRHAGAIFLGAYTSESLGDYCAGPNHVLPTSGTARFSSPLG VYDFQKRSSLIEVSEQGAQALGRIASVLAHGEGLQGHARAAEMRLK" misc_feature 871152..872336 /locus_tag="Alide2_0830" /note="E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-...; Region: Histidinol_dh; cd06572" /db_xref="CDD:119329" misc_feature 871158..872363 /locus_tag="Alide2_0830" /note="Histidinol dehydrogenase [Amino acid transport and metabolism]; Region: HisD; COG0141" /db_xref="CDD:30490" misc_feature order(871230..871232,871464..871466,871470..871475, 871497..871499,871560..871562,871638..871643, 871647..871649,871710..871718,871722..871727, 871860..871862) /locus_tag="Alide2_0830" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature order(871314..871319,871326..871331,871335..871337, 871344..871349,871356..871361,871368..871373, 871401..871403,871407..871409,871419..871433, 871440..871442,871446..871448,871482..871496, 871695..871697,871740..871742,871752..871754, 871824..871829,871836..871841,871845..871853, 871857..871862,872070..872072,872085..872087, 872094..872099,872103..872129,872133..872135, 872139..872144,872148..872162,872166..872168, 872172..872174,872202..872207,872211..872225, 872229..872234,872241..872264,872307..872312, 872316..872336) /locus_tag="Alide2_0830" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119329" misc_feature order(871488..871490,871494..871496,871785..871787, 871860..871862,872055..872060,872145..872147, 872157..872162,872178..872180,872319..872321, 872325..872327,872334..872336) /locus_tag="Alide2_0830" /note="product binding site; other site" /db_xref="CDD:119329" misc_feature order(871494..871496,871785..871787,871851..871853, 871860..871862,872055..872060,872145..872147, 872157..872162,872178..872180,872319..872321, 872325..872327,872334..872336) /locus_tag="Alide2_0830" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature order(871851..871853,871860..871862,872157..872159, 872334..872336) /locus_tag="Alide2_0830" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:119329" misc_feature 872055..872060 /locus_tag="Alide2_0830" /note="catalytic residues [active]" /db_xref="CDD:119329" gene 872486..873213 /locus_tag="Alide2_0831" /note="hypothetical protein" /pseudo /db_xref="GeneID:10481852" gene 873231..874349 /locus_tag="Alide2_0833" /db_xref="GeneID:10481853" CDS 873231..874349 /locus_tag="Alide2_0833" /EC_number="2.6.1.9" /inference="protein motif:HAMAP:MF_01023" /note="PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: dia:Dtpsy_0729 histidinol-phosphate aminotransferase" /codon_start=1 /transl_table=11 /product="histidinol-phosphate aminotransferase" /protein_id="YP_004386762.1" /db_xref="GI:330823459" /db_xref="InterPro:IPR004839" /db_xref="InterPro:IPR005861" /db_xref="GeneID:10481853" /translation="MTDATPQSLALQRIRADVRAMHAYAVHDATGYLKMDAMENPFGL PPALQAALGQRLGQLALNRYPGTRQNDLKAALAAHALAPEGSALILGNGSDELIGLVQ LACARRDASGPAKVLAPAPGFVMYAMCAQQHGLQYVGVDLDGEFQLREQAMLDAIAEH RPALTFLAYPNNPTATLWDEAVVQRIADAVAEVGGIVVMDEAYQPFASRSWIDRMRAE PARNGHVLLMRTLSKFGLAGVRLGYMIGPAALVHEIDKLRPPYNVSVLNCEAALFALE HAGVFAAQAAELRAARTDLLAALRAMPGVEKVWDSQANMVLVRVADSARAYEGMKACK ILVKNVSTMHPSLANCLRLTVGSHADNAQMLAALQASL" misc_feature 873273..874334 /locus_tag="Alide2_0833" /note="histidinol-phosphate aminotransferase; Region: hisC; TIGR01141" /db_xref="CDD:162223" misc_feature 873495..874340 /locus_tag="Alide2_0833" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(873507..873515,873597..873599,873744..873746, 873837..873839,873918..873920,873924..873929, 873948..873950) /locus_tag="Alide2_0833" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(873516..873518,873627..873629,873816..873818, 873942..873950,874029..874031,874038..874040) /locus_tag="Alide2_0833" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 873927..873929 /locus_tag="Alide2_0833" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 874346..874978 /locus_tag="Alide2_0834" /db_xref="GeneID:10481854" CDS 874346..874978 /locus_tag="Alide2_0834" /EC_number="4.2.1.19" /inference="protein motif:PRIAM:4.2.1.19" /note="KEGG: dia:Dtpsy_0730 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase" /codon_start=1 /transl_table=11 /product="Imidazoleglycerol-phosphate dehydratase" /protein_id="YP_004386763.1" /db_xref="GI:330823460" /db_xref="InterPro:IPR000807" /db_xref="GeneID:10481854" /translation="MTSSALVTSSPDPCADRTAEVSRNTAETRISVRVNLDGTGQASL HTGIGFFDHMLDQIARHGLIDLDVRCDGDLHIDGHHTVEDVGITLGQAFARAVGDKKG IRRYGHAYVPLDEALSRVVVDFSGRPGLHLHIPFTAASIGGFDTQLTYEFFQGFVNHA GVTLHIDNLKGINAHHQCETVFKAFARALRAALERDPRAAGVIPSTKGSL" misc_feature 874400..874975 /locus_tag="Alide2_0834" /note="Imidazoleglycerol-phosphate dehydratase; Region: IGPD; cd07914" /db_xref="CDD:153419" misc_feature order(874424..874426,874502..874504,874514..874516, 874523..874528,874580..874585,874592..874594, 874658..874660,874682..874687,874724..874726, 874796..874798,874868..874873,874880..874882) /locus_tag="Alide2_0834" /note="putative active site pocket [active]" /db_xref="CDD:153419" misc_feature order(874490..874495,874502..874504,874568..874576, 874580..874585,874757..874771,874778..874780, 874784..874786,874793..874798,874859..874873) /locus_tag="Alide2_0834" /note="4-fold oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153419" misc_feature order(874502..874504,874580..874585,874592..874594, 874796..874798,874868..874873,874880..874882) /locus_tag="Alide2_0834" /note="metal binding residues [ion binding]; metal-binding site" /db_xref="CDD:153419" misc_feature order(874655..874657,874661..874663,874667..874675, 874679..874687,874691..874696,874706..874714, 874724..874726,874730..874732,874832..874834, 874838..874840,874844..874846,874850..874852, 874910..874912,874919..874921,874937..874939) /locus_tag="Alide2_0834" /note="3-fold/trimer interface [polypeptide binding]; other site" /db_xref="CDD:153419" gene 875029..875697 /locus_tag="Alide2_0835" /db_xref="GeneID:10481855" CDS 875029..875697 /locus_tag="Alide2_0835" /inference="protein motif:TFAM:TIGR01855" /note="KEGG: dia:Dtpsy_0731 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I, C-terminal" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase, glutamine amidotransferase subunit" /protein_id="YP_004386764.1" /db_xref="GI:330823461" /db_xref="GO:0003824" /db_xref="InterPro:IPR000991" /db_xref="InterPro:IPR010139" /db_xref="GeneID:10481855" /translation="MNSEVKTVVVVDYGMGNLRSVSQAVQAAAEGSGWRVAVSASPEQ VRAAQRVVLPGQGAMPDCMRELRESGLLEPVLEAAASKPLFGVCVGMQMLLDHSAEGD TPGLGLIPGEVLKFDLAGRTQPDGSRYKVPQMGWNRVRQIRHAGIVHPVWAGVPDDSY FYFVHSFYARPADPAHVAGEADYGVPFAAAIARDNIFATQFHPEKSAEHGLALYRNFL HWNP" misc_feature 875044..875694 /locus_tag="Alide2_0835" /note="imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13146" /db_xref="CDD:183871" misc_feature 875050..875682 /locus_tag="Alide2_0835" /note="Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748" /db_xref="CDD:153219" misc_feature order(875176..875199,875284..875298,875632..875634, 875638..875640) /locus_tag="Alide2_0835" /note="putative active site [active]" /db_xref="CDD:153219" misc_feature 875176..875199 /locus_tag="Alide2_0835" /note="oxyanion strand; other site" /db_xref="CDD:153219" misc_feature order(875290..875292,875632..875634,875638..875640) /locus_tag="Alide2_0835" /note="catalytic triad [active]" /db_xref="CDD:153219" gene 875750..876493 /locus_tag="Alide2_0836" /db_xref="GeneID:10481856" CDS 875750..876493 /locus_tag="Alide2_0836" /EC_number="5.3.1.16" /inference="protein motif:TFAM:TIGR00007" /note="TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; KEGG: ajs:Ajs_0765 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis" /codon_start=1 /transl_table=11 /product="phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase" /protein_id="YP_004386765.1" /db_xref="GI:330823462" /db_xref="GO:0003949" /db_xref="InterPro:IPR006062" /db_xref="InterPro:IPR006063" /db_xref="GeneID:10481856" /translation="MLLIPAIDLKDGHCVRLKQGDMDQSTTFGEDPAAMARKWVDAGA RRLHLVDLNGAFAGQPKNKAAIKAILAEVGSDIPVQLGGGIRDLDTIERYIDAGLEYV IIGTAAVKNPGFLKDACSAFGGHIIVGLDAKDGKVATDGWSKLTGHEVVDLARKFEDW GVESIIYTDIGRDGMLSGINVEATVKLAQALTIPVIASGGLAGMADIEKLCEVEDEGV EGVICGRAIYSGDLDFAAAQARADELAGA" misc_feature 875750..876478 /locus_tag="Alide2_0836" /note="Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]; Region: HisA; COG0106" /db_xref="CDD:30455" misc_feature 875753..876466 /locus_tag="Alide2_0836" /note="HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-...; Region: HisA; cd04732" /db_xref="CDD:73394" misc_feature order(875771..875773,875891..875893,876140..876142) /locus_tag="Alide2_0836" /note="catalytic residues [active]" /db_xref="CDD:73394" gene complement(876500..877696) /locus_tag="Alide2_0837" /db_xref="GeneID:10481857" CDS complement(876500..877696) /locus_tag="Alide2_0837" /inference="protein motif:PFAM:PF12138" /note="PFAM: Spherulation-specific family 4; KEGG: ajs:Ajs_0766 hypothetical protein" /codon_start=1 /transl_table=11 /product="Spherulation-specific family 4" /protein_id="YP_004386766.1" /db_xref="GI:330823463" /db_xref="InterPro:IPR021986" /db_xref="GeneID:10481857" /translation="MHLRSRPSHSLAASLLTLAAALTGCGGGSGQGSDSGSSPAASSA EVAFTAPAEADNVHTVNTPVQLQLSVKIAGAAAPDGTAITLSGPASASFAPVQPQTRG GVATSSLTAAQAGEMQLQALAAATQDKAGAATRTLYIRPQPQPLELLVPAYFSAGPGS DWEKLASGAQSFPAVPITAILNPSNGIFTKEDPLFTAAITAFRQNGGKVLGYVYTRYG TGARSVADIQRNIDNYRKIYGTQVDGFFLDEMDATSKQLGFYREIYQYIKGLDSRLRV VGNPGTYPVADSASVVDALVSFEGQAVDYRSVTPQPANKWVYNLANGAQAALVHDAAN CGAMQEVLRSANTPQRNTGLVYATDRHYDYPTNTGNPWATLPAYWEQMLGTADAINKG RALPGC" sig_peptide complement(877598..877696) /locus_tag="Alide2_0837" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.419 at residue 33" misc_feature complement(876533..877261) /locus_tag="Alide2_0837" /note="Spherulation-specific family 4; Region: Spherulin4; pfam12138" /db_xref="CDD:152573" gene complement(877764..879137) /locus_tag="Alide2_0838" /db_xref="GeneID:10481858" CDS complement(877764..879137) /locus_tag="Alide2_0838" /inference="similar to AA sequence:KEGG:Ajs_0767" /note="KEGG: ajs:Ajs_0767 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_004386767.1" /db_xref="GI:330823464" /db_xref="GeneID:10481858" /translation="MAGIGFELRHMLRKNTLLSLVQAYAYAGVIGSGPWVLSIVGILL VGIFSASVVVPATLVTQFQTSVTYLVASSLIYTSLVQLAFTRFISDRLFEKHKHLVMP NLHGLMVIVLLGAGVLATLALFIVLPGLGLAYRLLMLAGFMLMSGVWVLTVLLSGMKR YKAIVGLFGLAYGLIVASALLLRPWGLEGLLGAFVLGHFVLLAGMWLLVVKEFHPARQ LISFDFLQPDKLYPSLVAVGLLYNLGIWADKFMFWFFPPTSQPIIGHLRASLIYDLPV FLSYLSIIPGMAVFLVRIETDFVEYYDKFYDAVRGGGSLEYIEAMRDEMVYAIQQGLG EIAKIQTLAVLVTFVAGPWLLDTLGISRLYLPLLHVQVVGAGLQVGLMAVLNVFFYLD QRRTVLLLCAMFVLLNVALTGLTLAFGAALYGYGFALATLLTLATGLLLLSRRLHRLE YQTFMLQ" misc_feature complement(877914..879137) /locus_tag="Alide2_0838" /note="Predicted membrane protein [Function unknown]; Region: COG4267" /db_xref="CDD:33989" gene complement(879137..880669) /locus_tag="Alide2_0839" /db_xref="GeneID:10481859" CDS complement(879137..880669) /locus_tag="Alide2_0839" /inference="protein motif:PFAM:PF00534" /note="PFAM: Glycosyl transferase, group 1; KEGG: ajs:Ajs_0768 glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="group 1 glycosyl transferase" /protein_id="YP_004386768.1" /db_xref="GI:330823465" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10481859" /translation="MNHPKAQSADIALMLEGTFPYVSGGVSSWINQIIRAYPEYRFAI VFLGSRREDYGGFKYPLPDNVVHFEEHFLHEQAHWHPQPAARRGDAQGQALVQRLLDA FDQGPAAPRAMEAFREVAQQMMPGGSVQLGDFLYSKRAWDIICGIYRAHCADPSFVDF FWTVRLMLQPLWLLARVARQLIPVRAVHCASTGYAGFLGALLAQTRGVPLILSEHGIY TKERKIDLFKSEWIRDNRNIFQRDPTELSYFRQMWIHFFEWLGRYCYAHADPILALYE ANRLRQVQDGAAPERTANIPNGIKLERFAPLRAQRPLEPPPVLCLIGRVVPIKDIKTF IRAMRRVVNQRPDAQGWIAGPAEEDPAYAEECSNLVRSLGLQEHVRFLGMQRVEDLMP RIGLVVLSSISEALPLVLLEGYAAGVPAVSTDVGSCRQLLEGLDEEDRALGPSGAVVP IAEPQQLADAALQLLGDTAAWQAASRAAIARVERYYTDTLMFDRYRQVYEHALARTPG AA" misc_feature complement(879170..880642) /locus_tag="Alide2_0839" /note="This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule...; Region: GT1_like_3; cd03813" /db_xref="CDD:99984" gene complement(880666..881667) /locus_tag="Alide2_0840" /db_xref="GeneID:10481860" CDS complement(880666..881667) /locus_tag="Alide2_0840" /inference="similar to AA sequence:KEGG:Ajs_0769" /note="KEGG: ajs:Ajs_0769 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_004386769.1" /db_xref="GI:330823466" /db_xref="GeneID:10481860" /translation="MLNLKLGLSALGLEVSAWSGAWLLAERSDAALASYLLLHAAASV LLSLSLLPLLPPRLSKPRWATLLLMTACSYAVPVAGFLGVIAAFVILRLYRRRSLPED FDAVQLPEFDQHQRRQSQFRHAGLHSFLTNAQVPVQARMRAMAALQYASGRTASPLLR SVLGDASEDLRLLAYGMLDNLEKRINRAIDSELDALQAALPDSSQQLQSAHRLSDLYW ELVYQALVQGDLHAHAIQESLRYCQLVLQRQEGNAAMHLRRGRLLHALGRTQEAEHAY DKARALGLPATRVLPYLAQLAFERRDHAQAQALMRELRQWGALPRLRPVIDYWSQRP" gene complement(881660..883054) /locus_tag="Alide2_0841" /db_xref="GeneID:10481861" CDS complement(881660..883054) /locus_tag="Alide2_0841" /inference="similar to AA sequence:KEGG:Ajs_0770" /note="KEGG: ajs:Ajs_0770 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_004386770.1" /db_xref="GI:330823467" /db_xref="GeneID:10481861" /translation="MPTPSDSPGARRQTAGENARPRALPGTGLPRHLLGRLAIAATHP AVTVGETLLLPLLAVALGLAWAPQDPLQIQATFPWPWLAPVVLALRYGPMAGLGGASV LLACWLGLNAGHWGNFPQLYFLGGLILVMLVGEFSSLWQARTRRAETLQLYLDQRLEH LVRQHYLLRLSHDRLEQELIARPMSMRDALAALRHAGSEDGGDALAPQALLRLLSQYC QLECAAMHAVSDGHAAARPSASIGAYDGLHADDPLVRQALQTGQLCHVSQAVTAQQDT RYLVAAPLLDLAGDMYGLLVVQDMPFFALQEESLQTIQLLLGYYTDGLSMSQLAQPIV QQFPDCPPLFAFELQRLAHIHRSTQVPSIVVALELQQRALEQDLPPQIERLKRELDEV WRIEAPGRQVLAVLMPLGNATTAEGYIHRLEGWMQHKSQQSLAQAGIFPHVVQPDSAQ PVRTVQRLHAIAHA" gene complement(883062..883616) /locus_tag="Alide2_0842" /db_xref="GeneID:10481862" CDS complement(883062..883616) /locus_tag="Alide2_0842" /inference="similar to AA sequence:KEGG:Ajs_0771" /note="KEGG: ajs:Ajs_0771 putative lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386771.1" /db_xref="GI:330823468" /db_xref="GeneID:10481862" /translation="MLHRRPSRARQLGLLLATGAIALLSACSTLDQSHPPQLARQASW VVLPFANHTETPLAGQRAEAIAQALLSAQGVGQVRRTPATTQQEALFGAGDAQRSEDA LAWAREQKIRYALAGSVEEWRYKVGVDGEPAAGVTLQILDVATGDTLWSGSGGQSGWS REALSAVAQKLIRKLLQSGLAGSR" sig_peptide complement(883515..883616) /locus_tag="Alide2_0842" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.571 at residue 34" gene complement(883638..887441) /locus_tag="Alide2_0843" /db_xref="GeneID:10481863" CDS complement(883638..887441) /locus_tag="Alide2_0843" /inference="protein motif:PFAM:PF07719" /note="PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0772 TPR repeat-containing protein" /codon_start=1 /transl_table=11 /product="tetratricopeptide TPR_2 repeat-containing protein" /protein_id="YP_004386772.1" /db_xref="GI:330823469" /db_xref="InterPro:IPR011717" /db_xref="InterPro:IPR013105" /db_xref="GeneID:10481863" /translation="MACGALWLLYPRQNLEQRLATSGETELSTAYLNNLLRSDPDNPR LRLLLAQRQIAHGDTASARTTLQPALDSADPALRKEALWAQWDLLHSEYRHVPDREPD RRLALLDGLRRHIRQLAQEGWPQERQDRLAALASQFGEQEIALALSRREAPQDPREAA LYYEREAREALARGDYEGCAQLYLSARDSTPDPAQAKAYYGAAIAALRSGNQTAAALE LAERELGPLADDPQTLFMLTQLARAAGRPDVAEHYVRRLLRMALERQVTQWASAEQDF ALRPVAWRPQPPAALAGPVFDDGADLLVHPALRLAQQVADKASARPSPALPFDDKTYT LGYEVFLENRKLEDAWTIANAAVRQNPADMRWRERLAQVSEWTQRPGIALENWLVLAR QTNQDAAWQAVLRLAPGQFDDAALVQALRHQLRSRSGDPRLMRALVDAQERLGEPQPA IDYLRQHAQDPEALELLAQLAERAGQPDLALQTWRQLLADPAQITPERAMHAAVLALQ HRQPELGLQWLQAVQDHPPASAEAAAELWRFTGDLARSRARDQLAIAAYRKLVDAQHA DVADYDALIGLLQQDQPLEAAKVALLAWQQHDEPRHLIEALTLYSSRNQWNEFAHALD QLDPTPDAARHSLARMRRSGQFLRLVGGYHHNAGRFAEARQYYEEGLAIDPASSDMRQ ALLWLLIDSNDAASIRRLLAAHEQAWSADEDLHEALAAAYQALSLPQVALHRYLSPHV AEREGDFLWLMNYADALEQNQEADRAWRLRRHLLSQQWQEGRNGRRLTPAQARQRWLT EEGLEATQRVARARLILLQRPGDPAQEVLRELLRLDRDAQGGYSNAAAETAIGWLQDA GEYTAERGFLWHQYARSRSLRTNRPLWAEITVALAEDDKAAAGQLLQEFDERLPRYDR VNTAAAVGDIRLAQSAAFETQESQPDDNPLHLQLTDNLLAFSDHAGMLSRHSDLGAID EDQAEARLHLAISPRLSLDLDASRIQRRVTAPDQLRDAPGEDIAGALLRWGHADGETR LRVASRRGYADTTPLSIEHEQRLDNRLSLRGELGWHLPSEESLALRLGGMKTRVAAHL RYQATRQDSLLLSQWSEQYRLQTGAEVGRGRHTAIEYSHAYRQDAPTWEWGAFWSTHR FERRHPFFLGQQGQDFLQRFAPAGVTSLGLDYFLPESFQFYGVRLSTNMRFEQDHTRA LRPFASVSLTRHSLLGAGYDLRLGLAGSVLGPDHLRLSFGLGKSGVQSLGLTRVLELS YRLHF" misc_feature complement(<885339..886019) /locus_tag="Alide2_0843" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" gene complement(887488..890319) /locus_tag="Alide2_0844" /db_xref="GeneID:10481864" CDS complement(887488..890319) /locus_tag="Alide2_0844" /inference="protein motif:PFAM:PF03537" /note="PFAM: TM1410 hypothetical-related protein; KEGG: ajs:Ajs_0773 polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386773.1" /db_xref="GI:330823470" /db_xref="InterPro:IPR004352" /db_xref="GeneID:10481864" /translation="MAFRFLLQLLQLCTRLAWGLALLPLAWSAQAATPAVALYYGHEI PLGEFRAFDLLVVDPDHEAARQARALEPATKVYAYVSVTEVQPSRGYHADIPADWKLA RNQDWQSEVIDQSVAAWPDFFASRVVAPLWERGFRGFFLDTLDSYRLAGTFDEQAQQQ GLVRVIETLHQRFPGIRLILNRGFDILPQVRGMVEMVAAESLYQRWNAKTRRYEEVPN QDRQWLMDQLRTVRQRDGLPVLVIDYVSPHDRALTRATAQRILQDGFIPWVTDAQLAT IGMGSIEPVPRRVLVLYNGGESPALNYANAHRFLQMPLNHMGYVTDYVDVRDSLPGLM ARDRYAGVVSWFSGYVPAAKRAGLSQWLQARIHEGMPLAVVGDWGMTPDRVLTRSLGL ALDRAEPQGALRQVQLAPMMGLENPLPLPSRQTELVQLAPDMARQAQPLVELRDARGR TFVGGAITPWGGFILDPNVLFEIPGTEDARWLVDPFAFLQQALRLPAIPVPDTTTENG RRLLLAHVDGDGFPSLAEFPGSPLAAQVLLKEIFEKYRIPQTMSVIEAEVAPDGLYPG LSPRMEEVARKIFRLPHIEVGSHTYSHPFLWDANVQHGLFKENPEAAQSLVVPGYTMD LEREIVGSSHYINERLAPSGKPVKVLQWTGDTAPSARALEITHRAGLLNINGGDTSIS RANPSLTAVGALGIRKGGFLQVYAPITNENIYTNLWTGPYYGFERAIETFEMTDSPRR IKPVGIYYHTYSASKPAALKALKKVYDWALAQPLHPVHASEFVTKVQDFYDYAMARDG EGWRLRSSNGALRTVRLPPALGLPRLGASQAVAGWRRGGEGLYVHLSGPSAFLQTDGR EAATPYLHDANARLVDWQAEGDGRRVQFTLQGHVPLEFALANTQACQVRAGQRTLTAL RPAAQDRTAVQQFKLPDAAAQIQILCPER" misc_feature complement(889588..890214) /locus_tag="Alide2_0844" /note="TM1410 hypothetical-related protein; Region: DUF297; cl00997" /db_xref="CDD:194002" misc_feature complement(888298..>888699) /locus_tag="Alide2_0844" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene 890492..891508 /locus_tag="Alide2_0845" /db_xref="GeneID:10481865" CDS 890492..891508 /locus_tag="Alide2_0845" /EC_number="5.1.3.2" /inference="protein motif:TFAM:TIGR01179" /note="TIGRFAM: UDP-glucose 4-epimerase; KEGG: ajs:Ajs_0774 UDP-galactose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="UDP-glucose 4-epimerase" /protein_id="YP_004386774.1" /db_xref="GI:330823471" /db_xref="GO:0003978" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR005886" /db_xref="GeneID:10481865" /translation="MILVTGGAGYIGSHMCVALAQANEPFLVLDNFGNSRPSVLERIG RITGREPECVRGDVRDAALLQQLFARHEFTAVIHFAALKAVGESVREPLAYYDNNVAG TVTLLQAMRQAGVRQLVFSSSATVYGDPASLPIREDCPLSATNPYGWSKLMMEQVLAD VDASEPGQWRIARLRYFNPVGAHESGLIGEDPQGVPNNLMPYVAQVASGQREFLNVWG SDYPTPDGTGLRDYIHVCDLAEGHVAALRYLREHPGLLTVNLGTGRPVSVLEMVRGFE QASGRPVPYRLAERRPGDVAACWADPGLAERLLGWRATRDVQAMCQDAWRWQDGVART LQPA" misc_feature 890495..891475 /locus_tag="Alide2_0845" /note="UDP-glucose 4-epimerase; Region: PLN02240" /db_xref="CDD:177883" misc_feature 890495..891475 /locus_tag="Alide2_0845" /note="UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247" /db_xref="CDD:187558" misc_feature order(890507..890509,890513..890524,890579..890596, 890657..890665,890726..890734,890738..890740, 890783..890785,890852..890860,890930..890932, 890942..890944,891017..891022,891026..891028) /locus_tag="Alide2_0845" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187558" misc_feature order(890756..890758,890762..890770,890777..890782, 890789..890794,890801..890806,890810..890815, 890822..890824,890927..890929,890936..890938, 890948..890950,890957..890962,890966..890974) /locus_tag="Alide2_0845" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187558" misc_feature order(890786..890788,890858..890860,890930..890932, 890942..890944) /locus_tag="Alide2_0845" /note="active site" /db_xref="CDD:187558" misc_feature order(890858..890866,890930..890932,891017..891025, 891080..891088,891131..891142,891173..891175, 891179..891181,891185..891187,891293..891295, 891362..891364,891371..891373) /locus_tag="Alide2_0845" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187558" gene 891549..892328 /locus_tag="Alide2_0846" /db_xref="GeneID:10481866" CDS 891549..892328 /locus_tag="Alide2_0846" /EC_number="5.3.1.16" /inference="protein motif:TFAM:TIGR00735" /note="TIGRFAM: Histidine biosynthesis, HisF; KEGG: dia:Dtpsy_0738 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis" /codon_start=1 /transl_table=11 /product="imidazoleglycerol phosphate synthase, cyclase subunit" /protein_id="YP_004386775.1" /db_xref="GI:330823472" /db_xref="GO:0000107" /db_xref="InterPro:IPR004651" /db_xref="InterPro:IPR006062" /db_xref="GeneID:10481866" /translation="MLAKRIIPCLDVTGGRVVKGVNFVELRDAGDPVEIAARYNEQGA DELTFLDITATSDGRDLILPIIEAVASQVFIPLTVGGGVRTVADVRRLLNAGADKTSF NSAAIANPDVIDQASGKYGAQCIVVAIDAKRRQGQEVAERGEGWDVYSHGGRKNTGLD AVRWAEEMARRGAGEILLTSMDRDGTKSGFDLQLTRAVSDAVGVPVIASGGVGNLDHL ADGVQQGGADAVLAASIFHYGEFTVRQAKEHMRARGIPVRL" misc_feature 891549..892325 /locus_tag="Alide2_0846" /note="Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]; Region: HisF; COG0107" /db_xref="CDD:30456" misc_feature 891558..892307 /locus_tag="Alide2_0846" /note="The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-; Region: HisF; cd04731" /db_xref="CDD:73393" misc_feature order(891603..891605,891696..891698,891792..891794, 891855..891860,891930..891932,891936..891938, 892002..892004,892083..892085,892098..892103, 892173..892181,892245..892250) /locus_tag="Alide2_0846" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73393" misc_feature order(891666..891668,891681..891683,891747..891749, 891759..891761,891768..891770,891774..891776, 891831..891833,891840..891845,891915..891917, 892071..892073,892155..892157,892230..892232) /locus_tag="Alide2_0846" /note="glutamase interaction surface [polypeptide binding]; other site" /db_xref="CDD:73393" gene 892435..892824 /locus_tag="Alide2_0847" /db_xref="GeneID:10481867" CDS 892435..892824 /locus_tag="Alide2_0847" /EC_number="3.5.4.19" /inference="protein motif:PRIAM:3.5.4.19" /note="KEGG: aav:Aave_1048 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase" /codon_start=1 /transl_table=11 /product="phosphoribosyl-AMP cyclohydrolase" /protein_id="YP_004386776.1" /db_xref="GI:330823473" /db_xref="InterPro:IPR002496" /db_xref="GeneID:10481867" /translation="MNWLDQVKWDAQGLVPVIAQEAATGDVLMFAWMDREALQKTAEL GRAVYYSRSRARLWFKGEESGHVQQVHEIRLDCDNDVVLLKVTQLGHEPGIACHTGRH SCFFSVLKDGAWQPVDPVLKDPESIYK" misc_feature 892435..892821 /locus_tag="Alide2_0847" /note="Phosphoribosyl-AMP cyclohydrolase; Region: PRA-CH; cl00344" /db_xref="CDD:193779" gene 892829..893206 /locus_tag="Alide2_0848" /db_xref="GeneID:10481868" CDS 892829..893206 /locus_tag="Alide2_0848" /inference="protein motif:TFAM:TIGR03188" /note="KEGG: dia:Dtpsy_0740 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like" /codon_start=1 /transl_table=11 /product="phosphoribosyl-ATP diphosphatase" /protein_id="YP_004386777.1" /db_xref="GI:330823474" /db_xref="GO:0004636" /db_xref="InterPro:IPR008179" /db_xref="InterPro:IPR021130" /db_xref="GeneID:10481868" /translation="MPSNDSLARLAAVIESRKPANGGDPQASYVARLLHKGPDAFLKK IGEEATEVVMAAKDVDHGAPAAKLVYEVADLWFHSMVALAHYGLAPADVIAELERREG TSGIEEKALRKATGRASEEGGGQ" misc_feature 892835..893167 /locus_tag="Alide2_0848" /note="MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345" /db_xref="CDD:193780" gene 893203..893589 /locus_tag="Alide2_0849" /db_xref="GeneID:10481869" CDS 893203..893589 /locus_tag="Alide2_0849" /inference="similar to AA sequence:KEGG:Dtpsy_0741" /note="KEGG: dia:Dtpsy_0741 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_004386778.1" /db_xref="GI:330823475" /db_xref="GeneID:10481869" /translation="MSNDIIDVEPDERAESLKAIGWVSYILHLIVAVGAVMPGAQPGV ALLIVALVIDLVKKSDAEGTWQASHFAWRIRTVLWAGVLYVVTTPLWLLFFFPGWIAW GLISIWFLYRIVRGMVSMNKGQAVDG" misc_feature 893236..893580 /locus_tag="Alide2_0849" /note="Predicted membrane protein [Function unknown]; Region: COG3671" /db_xref="CDD:33469" gene 893582..894610 /locus_tag="Alide2_0850" /db_xref="GeneID:10481870" CDS 893582..894610 /locus_tag="Alide2_0850" /inference="protein motif:PFAM:PF01734" /note="PFAM: Patatin/Phospholipase A2-related; KEGG: ajs:Ajs_0779 patatin" /codon_start=1 /transl_table=11 /product="Patatin" /protein_id="YP_004386779.1" /db_xref="GI:330823476" /db_xref="InterPro:IPR002641" /db_xref="GeneID:10481870" /translation="MAEQAPAPPLNLALQGGGSHGAFTWGVLDALLEDGGFVLEGISG TSAGAMNAVALAHGFAQAALQHKDAAEAHRAGCALARESLTRLWEGVGAMGSLMWGVP LQGNPLLGMMSQWLSPYQTNPLGINPLRGLLERVVDFDALCHARRASVPKVFVCATNV RTGRGEIFSGARLSADAVMASACLPLMFKAVPIGGEHYWDGGFSGNPALYPLIYQTQC ADVLLVQINPIEHRDLPDTAQEIMERMNEVTFNASLLGELRAIDFVRRLLAEGRLDPQ HYKSMRMHRIDGGSVLAAFGDASKTRADMGFVRQLFQLGRTEGERWLHRHRRDVGVQH TLHLTDNH" misc_feature 893615..894403 /locus_tag="Alide2_0850" /note="Hypothetical patatin similar to Z1214 protein of Escherichia coli; Region: Pat_hypo_Ecoli_Z1214_like; cd07209" /db_xref="CDD:132848" misc_feature order(893630..893635,893639..893641,893717..893719, 894179..894181) /locus_tag="Alide2_0850" /note="active site" /db_xref="CDD:132848" misc_feature 893711..893725 /locus_tag="Alide2_0850" /note="nucleophile elbow; other site" /db_xref="CDD:132848" gene 894649..895005 /locus_tag="Alide2_0851" /db_xref="GeneID:10481871" CDS 894649..895005 /locus_tag="Alide2_0851" /inference="similar to AA sequence:KEGG:Dtpsy_0743" /note="KEGG: dia:Dtpsy_0743 histidine triad (HIT) protein" /codon_start=1 /transl_table=11 /product="histidine triad (HIT) protein" /protein_id="YP_004386780.1" /db_xref="GI:330823477" /db_xref="GeneID:10481871" /translation="MHDPNCLFCKIIAGQIPSKKVYEDEQVFAFHDIHPWAPVHFLIV PRLHLHSMAAVTPEHAGLLGHMMALAPKLAMEQGCNPYPDGGFRIVVNTGTEGGQEIH HLHMHVIGGPRPWLRG" misc_feature 894661..894981 /locus_tag="Alide2_0851" /note="Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276" /db_xref="CDD:29589" misc_feature order(894736..894738,894742..894747,894766..894768, 894772..894774,894922..894924,894943..894945, 894949..894951,894961..894963,894967..894969) /locus_tag="Alide2_0851" /note="nucleotide binding site/active site [active]" /db_xref="CDD:29589" misc_feature order(894955..894957,894961..894963,894967..894975) /locus_tag="Alide2_0851" /note="HIT family signature motif; other site" /db_xref="CDD:29589" misc_feature 894961..894963 /locus_tag="Alide2_0851" /note="catalytic residue [active]" /db_xref="CDD:29589" gene 895106..895354 /locus_tag="Alide2_0852" /db_xref="GeneID:10481872" CDS 895106..895354 /locus_tag="Alide2_0852" /inference="protein motif:TFAM:TIGR01411" /note="KEGG: ajs:Ajs_0781 twin arginine translocase protein A; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106" /codon_start=1 /transl_table=11 /product="twin-arginine translocation protein, TatA/E family subunit" /protein_id="YP_004386781.1" /db_xref="GI:330823478" /db_xref="GO:0008565" /db_xref="InterPro:IPR003369" /db_xref="InterPro:IPR006312" /db_xref="GeneID:10481872" /translation="MGSFSIWHWLIVLLIVVMVFGTKKLKNIGSDLGSAVKGFKDGMK DGASGDDQQAQAGAPAGQVTNGQTADKTTIDVEAKQKS" misc_feature 895106..895351 /locus_tag="Alide2_0852" /note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788" /db_xref="CDD:189129" gene 895380..895859 /locus_tag="Alide2_0853" /db_xref="GeneID:10481873" CDS 895380..895859 /locus_tag="Alide2_0853" /inference="protein motif:TFAM:TIGR01410" /note="KEGG: dia:Dtpsy_0745 sec-independent translocase; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106" /codon_start=1 /transl_table=11 /product="twin-arginine translocation protein, TatB subunit" /protein_id="YP_004386782.1" /db_xref="GI:330823479" /db_xref="InterPro:IPR003369" /db_xref="InterPro:IPR018448" /db_xref="GeneID:10481873" /translation="MIDIGLSKMALIGAVALIVIGPEKLPRVARTVGTLLGKAQRYVA DVKAEVNRSMELDELKKMKDEVESAARDVEQSIQTGASDLQKDMEQSLGGYGAASEAA GSSPDLSTVVPAYRHPGKNWRLKRAAVPQWYKARAGVRTKAQSGAARVARFRPQKFH" misc_feature 895380..895856 /locus_tag="Alide2_0853" /note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788" /db_xref="CDD:189129" gene 895925..896713 /locus_tag="Alide2_0854" /db_xref="GeneID:10481874" CDS 895925..896713 /locus_tag="Alide2_0854" /inference="protein motif:TFAM:TIGR00945" /note="KEGG: dia:Dtpsy_0746 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase" /codon_start=1 /transl_table=11 /product="Sec-independent protein translocase, TatC subunit" /protein_id="YP_004386783.1" /db_xref="GI:330823480" /db_xref="InterPro:IPR002033" /db_xref="InterPro:IPR019822" /db_xref="GeneID:10481874" /translation="MSETQNKEDELAGTEQPFVQHLMELRDRLVKAMIAIGVVAAVLF FYPGPGQLYDLLAAPLVAHLPQGATMIATSVISPFMVPLKILLMTAFLIALPFVLWQV WAFVAPGLYSHEKRLVLPLVISSTVLFFIGVAFCYFFVFGQVFSFIQGFAPKSITAAP DIEAYLGFVLTMFLAFGLAFEVPIAVVVLARLGLVSVDKLKSFRGYFIVAAFVIAAIV TPPDVVSQLALAVPMCLLYEIGIWAAQLFIRNTQAPEDTQESAS" misc_feature 895970..896704 /locus_tag="Alide2_0854" /note="Sec-independent protein translocase protein (TatC); Region: TatC; cl00521" /db_xref="CDD:193851" gene complement(896787..897926) /locus_tag="Alide2_0855" /db_xref="GeneID:10481875" CDS complement(896787..897926) /locus_tag="Alide2_0855" /EC_number="3.4.21.108" /inference="protein motif:PRIAM:3.4.21.108" /note="PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF" /codon_start=1 /transl_table=11 /product="HtrA2 peptidase" /protein_id="YP_004386784.1" /db_xref="GI:330823481" /db_xref="InterPro:IPR001254" /db_xref="InterPro:IPR001478" /db_xref="GeneID:10481875" /translation="MKRYWLLFSQAVTVLLAAYFVVTTLQPGWLQRGPATSGTGISLI EAPPSSGSQPAAGSFSTAARKAAPAVVSINTSKEVRHPRSDDPWFQFFFGDQGPQAQT GLGSGVIISPDGYILTNNHVVEGADEIEVTLTDSRRARATVIGTDPETDLAVLKVQLD KLPVIVLGDSDKLAVGDQVLAIGNPFGVGQTVTSGIVSALGRTHLGINTFENFIQTDA AINPGNSGGALVDVNGNLMGINTAIYSRSGGSMGIGFAIPVSTAKQVLEGIVRDGQVT RGWIGVEPNELSPELAQTFGVKATEGVIITGVLQGGPAAQAGIRPGDVILKVAGKSTD NVSQLLTAVAALQPGQAASFELQRGDTQIKVSVVPGTRPRVQQRR" misc_feature complement(897138..897608) /locus_tag="Alide2_0855" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" misc_feature complement(896826..897095) /locus_tag="Alide2_0855" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature complement(order(896907..896912,896919..896924, 897075..897077,897081..897092)) /locus_tag="Alide2_0855" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" gene 898017..898769 /locus_tag="Alide2_0856" /db_xref="GeneID:10481876" CDS 898017..898769 /locus_tag="Alide2_0856" /inference="protein motif:TFAM:TIGR00486" /note="KEGG: dia:Dtpsy_0749 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3" /codon_start=1 /transl_table=11 /product="NGG1p interacting factor 3 protein, NIF3" /protein_id="YP_004386785.1" /db_xref="GI:330823482" /db_xref="InterPro:IPR002678" /db_xref="GeneID:10481876" /translation="MSIQRHDLLAHFDALLQPERFKDYGPNGLQVEGRGEIARIVSGV TASRALIDAAIAARADAIFVHHGLFWRGMDGRVTGWMKERLQRLLAHDINLFAYHLPL DAHAELGNNAQLGCVLGWQADQRFGEQELGFAAPAAFADAADLAAHVRAALGRSVTLV APEGGRPIRRVAWCTGGAQGFFESAIAAGADAFITGEISEPQTHLARETGVAFIAAGH HATERYGAPAVAAHAARQLGLEHQFIDIDNPA" misc_feature 898023..898766 /locus_tag="Alide2_0856" /note="Uncharacterized conserved protein [Function unknown]; Region: COG0327" /db_xref="CDD:30675" misc_feature 898077..898766 /locus_tag="Alide2_0856" /note="NIF3 (NGG1p interacting factor 3); Region: NIF3; cl01309" /db_xref="CDD:194097" gene 898832..899884 /locus_tag="Alide2_0857" /db_xref="GeneID:10481877" CDS 898832..899884 /locus_tag="Alide2_0857" /EC_number="1.1.1.262" /inference="protein motif:TFAM:TIGR00557" /note="TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase" /protein_id="YP_004386786.1" /db_xref="GI:330823483" /db_xref="GO:0050570" /db_xref="GO:0051287" /db_xref="InterPro:IPR005255" /db_xref="GeneID:10481877" /translation="MNSTTNAPLPLAITQGDPAGIGPEIVAKAFRDAPQDLRGCFVVG DLATLRRAAACIERPGQASLPVALLDSPDAWAQVPPRCLPVWQLHELAGSLAPWGQVS AEAGHAAAVCVVWAARAALRGEIAGLVTAPLHKEALAAAGVHYPGHTELLQAEAAHHA GVPVAQMPVRMMLASDELRTVLVSIHVSLRDAIAAVTQDNVLQTLCITHAALSRSLGR APRIAVAGLNPHAGEGGLFGTEEREIIAPAIAQARAQGIDARGPYAPDTVFMRARSTA GRTGEFDVVVAMYHDQGLIPVKYLGVDKGVNVTLGLPLVRTSPDHGTAFDIAGQGVAD ASSLIEAVRMARRLAW" misc_feature 898859..899878 /locus_tag="Alide2_0857" /note="Pyridoxal phosphate biosynthetic protein PdxA; Region: PdxA; cl00873" /db_xref="CDD:186232" misc_feature 898862..899878 /locus_tag="Alide2_0857" /note="4-hydroxythreonine-4-phosphate dehydrogenase; Validated; Region: pdxA; PRK03743" /db_xref="CDD:179641" gene complement(899951..900379) /locus_tag="Alide2_0858" /db_xref="GeneID:10481878" CDS complement(899951..900379) /locus_tag="Alide2_0858" /inference="protein motif:TFAM:TIGR00220" /note="KEGG: dac:Daci_5504 large-conductance mechanosensitive channel; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel" /codon_start=1 /transl_table=11 /product="large conductance mechanosensitive channel protein" /protein_id="YP_004386787.1" /db_xref="GI:330823484" /db_xref="GO:0005216" /db_xref="InterPro:IPR001185" /db_xref="GeneID:10481878" /translation="MSLAKEFREFAIKGNVIDLAVGVIIGAAFGKIVDSVVADLIMPV VGLVFGKLDFSNLFIVLGSVPEGTARTLDALKKAGVPVFAYGNFITVAVNFLILAFII FMMIKQFNRLKREAPAEPAPEAVTPEDIVLLREIRDSLKR" misc_feature complement(899954..900379) /locus_tag="Alide2_0858" /note="Large-conductance mechanosensitive channel, MscL; Region: MscL; cl00860" /db_xref="CDD:186226" gene 900505..901104 /locus_tag="Alide2_0859" /db_xref="GeneID:10481879" CDS 900505..901104 /locus_tag="Alide2_0859" /EC_number="1.10.2.2" /inference="protein motif:TFAM:TIGR01416" /note="TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal" /codon_start=1 /transl_table=11 /product="ubiquinol-cytochrome c reductase, iron-sulfur subunit" /protein_id="YP_004386788.1" /db_xref="GI:330823485" /db_xref="GO:0008121" /db_xref="InterPro:IPR006317" /db_xref="InterPro:IPR017941" /db_xref="InterPro:IPR019470" /db_xref="GeneID:10481879" /translation="MSQTPVDSSKRTWLIASSCAGAVGGVATAVPFVSAFQPSEKAKA AGAAVEVDISGLKPDEKLTVEWRGKPVWIIRRSKEQLAELPKLDSQLADPESKRHPDE FTPAYARNEWRSIKPEILVVVGICTHLGCSPVDKFIPGPQPSLPSDWQGGFLCPCHGS TFDMAGRVFKNKPAPDNLEVPPHMYLSDTRLLIGEDKKA" sig_peptide 900505..900594 /locus_tag="Alide2_0859" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.967) with cleavage site probability 0.823 at residue 30" misc_feature 900529..901086 /locus_tag="Alide2_0859" /note="ubiquinol-cytochrome c reductase, iron-sulfur subunit; Region: Rieske_proteo; TIGR01416" /db_xref="CDD:188138" misc_feature 900658..901086 /locus_tag="Alide2_0859" /note="Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including...; Region: Rieske_cytochrome_bc1; cd03470" /db_xref="CDD:58540" misc_feature order(900880..900882,900886..900891,900967..900969, 900976..900978,900982..900984) /locus_tag="Alide2_0859" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:58540" gene 901120..902541 /locus_tag="Alide2_0860" /db_xref="GeneID:10481880" CDS 901120..902541 /locus_tag="Alide2_0860" /inference="protein motif:PFAM:PF00032" /note="PFAM: Cytochrome b/b6, C-terminal; Cytochrome b/b6, N-terminal; KEGG: dia:Dtpsy_0753 cytochrome b/b6 domain protein" /codon_start=1 /transl_table=11 /product="cytochrome b/b6 domain-containing protein" /protein_id="YP_004386789.1" /db_xref="GI:330823486" /db_xref="GO:0009055" /db_xref="GO:0016491" /db_xref="InterPro:IPR005797" /db_xref="InterPro:IPR005798" /db_xref="GeneID:10481880" /translation="MAAYREFKEISPNASAGAKLTNWLENRFPTAFDAYKVHMSEYYA PKNFNFWYIFGSLALLVLVIQIVTGIFLVMNYKPDAAKAFESVEYIMRDVPWGWLIRY MHSTGASAFFIVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLALMAEAFMGYLLPWGQ MSYWGAQVIVNLFSAIPFVGPDLALLIRGDYVVGDATLNRFFSFHVIAVPLVLLGLVV AHLLALHDVGSNNPDGIEIKGPGKPVDDKGHPLDGVPFHPYYTVHDIFGVSIFLFIFS AVIFFAPEFGGYFLEYNNFIPADPLKTPNHIAPVWYFTPFYSMLRAITSEMMYALIAC VVLGAGYGVLKAKLPGFIKGGIVVGAAVVIALMLSIDAKFWGVVVMGGAVIILFFLPW LDCSPARSIRYRPGWHKWLYAIFVVWFVVLAYLGTQAPSPVGERVSQVGTLFYFGFFL LMPWWTRLGTPKPVPDRVTFKSH" misc_feature 901213..901734 /locus_tag="Alide2_0860" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cd00284" /db_xref="CDD:29347" misc_feature order(901231..901236,901285..901287,901294..901296) /locus_tag="Alide2_0860" /note="Qi binding site; other site" /db_xref="CDD:29347" misc_feature order(901234..901239,901249..901257,901273..901278, 901285..901290,901297..901299,901369..901371, 901414..901416,901423..901428,901435..901440, 901444..901449,901453..901458,901465..901467, 901486..901503,901513..901518,901525..901530, 901537..901539,901546..901551,901579..901581, 901591..901611,901621..901626,901648..901650) /locus_tag="Alide2_0860" /note="intrachain domain interface; other site" /db_xref="CDD:29347" misc_feature order(901237..901242,901246..901248,901255..901257, 901318..901320,901330..901332,901339..901344, 901369..901374,901381..901386,901393..901407, 901411..901419,901426..901428,901510..901512) /locus_tag="Alide2_0860" /note="interchain domain interface [polypeptide binding]; other site" /db_xref="CDD:29347" misc_feature 901249..902478 /locus_tag="Alide2_0860" /note="cytochrome b; Provisional; Region: CYTB; MTH00145" /db_xref="CDD:177203" misc_feature order(901273..901275,901282..901287,901291..901296, 901450..901452,901462..901464,901471..901476, 901480..901482,901522..901527,901534..901539, 901543..901548) /locus_tag="Alide2_0860" /note="heme bH binding site [chemical binding]; other site" /db_xref="CDD:29347" misc_feature order(901303..901305,901312..901317,901324..901329, 901333..901338,901345..901347,901378..901380, 901420..901422,901429..901434,901441..901443, 901564..901569,901576..901581,901585..901590, 901732..901734) /locus_tag="Alide2_0860" /note="heme bL binding site [chemical binding]; other site" /db_xref="CDD:29347" misc_feature order(901549..901551,901558..901563,901570..901575, 901612..901614,901621..901626,901636..901638, 901720..901722,901729..901731) /locus_tag="Alide2_0860" /note="Qo binding site; other site" /db_xref="CDD:29347" misc_feature 901870..902406 /locus_tag="Alide2_0860" /note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: cytochrome_b_C; cl00193" /db_xref="CDD:185816" misc_feature order(901870..901884,901891..901899,901903..901908, 901915..901917,901924..901929,901936..901938, 901945..901950,901957..901962,901966..901968, 901993..901995,902002..902007,902308..902313, 902326..902331) /locus_tag="Alide2_0860" /note="interchain domain interface [polypeptide binding]; other site" /db_xref="CDD:29371" misc_feature order(901873..901881,901885..901887,901897..901899, 901906..901911,901918..901923,901930..901932, 901942..901947,901951..901959,901966..901968, 901990..901992,901996..902001,902005..902019, 902023..902031,902038..902040,902044..902055, 902239..902241,902269..902271,902278..902283, 902287..902295,902299..902301) /locus_tag="Alide2_0860" /note="intrachain domain interface; other site" /db_xref="CDD:29371" misc_feature order(901885..901887,901909..901911) /locus_tag="Alide2_0860" /note="Qi binding site; other site" /db_xref="CDD:29371" misc_feature order(902038..902040,902044..902049,902056..902058, 902065..902070,902257..902259) /locus_tag="Alide2_0860" /note="Qo binding site; other site" /db_xref="CDD:29371" gene 902558..903313 /locus_tag="Alide2_0861" /db_xref="GeneID:10481881" CDS 902558..903313 /locus_tag="Alide2_0861" /inference="protein motif:PFAM:PF02167" /note="KEGG: ajs:Ajs_0791 cytochrome c1; manually curated; PFAM: Cytochrome c1" /codon_start=1 /transl_table=11 /product="cytochrome c1" /protein_id="YP_004386790.1" /db_xref="GI:330823487" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR002326" /db_xref="GeneID:10481881" /translation="MKKLILTLVAALGLVAGAHASGGGMAWDKAPVNTTDTASLQNGA KLFVNYCLNCHSAAFMRFNRLKDIGLTDQQIKDNLLFTTDKIGETMKSTIDPKQAAAW FGTNPPDLTVIARSRAGSGGTGADYLYTFLRTFYRDDTKATGWNNLAFPNVGMPHALW QLQGDRRAIFEERESHGQTEHVFKGWERVAPGAMTDQQYDQAVGDLVNYLQWMGEPAQ NTRIRVGVWVLLFLAGFTFIAWRLNAAYWKDIK" sig_peptide 902558..902620 /locus_tag="Alide2_0861" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.827 at residue 21" misc_feature 902636..903307 /locus_tag="Alide2_0861" /note="Cytochrome C1 family; Region: Cytochrom_C1; pfam02167" /db_xref="CDD:190231" gene 903412..904023 /locus_tag="Alide2_0862" /db_xref="GeneID:10481882" CDS 903412..904023 /locus_tag="Alide2_0862" /inference="protein motif:PFAM:PF02798" /note="PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_0755 glutathione S-transferase domain protein" /codon_start=1 /transl_table=11 /product="glutathione S-transferase domain-containing protein" /protein_id="YP_004386791.1" /db_xref="GI:330823488" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="GeneID:10481882" /translation="MMVLYSGTTCPFSHRCRFVLFEKGMDFEIRDVDLYNKPEDISVM NPYGQVPILVERDLILYESNIINEYIDERFPHPQLMPGDPVDRARVRLFLLNFEKELF VHVNTLESRATKGNEKALEKARAHIRDRLTQLAPVFLKNKYMLGEGFSMLDVAIAPLL WRLDYYGIELSKNAAPLLKYAERIFSRPAYIEALTPSEKVMRK" misc_feature 903415..904017 /locus_tag="Alide2_0862" /note="stringent starvation protein A; Provisional; Region: sspA; PRK09481" /db_xref="CDD:181895" misc_feature 903415..903633 /locus_tag="Alide2_0862" /note="GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival...; Region: GST_N_SspA; cd03059" /db_xref="CDD:48608" misc_feature order(903433..903438,903445..903447,903451..903456, 903460..903465,903472..903477,903601..903603, 903610..903615) /locus_tag="Alide2_0862" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48608" misc_feature order(903445..903447,903556..903564,903595..903600) /locus_tag="Alide2_0862" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48608" misc_feature order(903550..903552,903583..903588,903601..903603, 903613..903615,903625..903627) /locus_tag="Alide2_0862" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48608" misc_feature 903661..903993 /locus_tag="Alide2_0862" /note="GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival...; Region: GST_C_SspA; cd03186" /db_xref="CDD:48113" misc_feature order(903670..903672,903676..903678,903682..903687, 903697..903699,903709..903711) /locus_tag="Alide2_0862" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48113" misc_feature order(903682..903684,903715..903717,903871..903876, 903883..903885,903895..903897,903970..903972, 903976..903978,903988..903990) /locus_tag="Alide2_0862" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48113" gene 904056..904580 /locus_tag="Alide2_0863" /db_xref="GeneID:10481883" CDS 904056..904580 /locus_tag="Alide2_0863" /inference="protein motif:PFAM:PF04386" /note="PFAM: Stringent starvation protein B; KEGG: dia:Dtpsy_0756 stringent starvation protein B" /codon_start=1 /transl_table=11 /product="Stringent starvation protein B" /protein_id="YP_004386792.1" /db_xref="GI:330823489" /db_xref="InterPro:IPR007481" /db_xref="GeneID:10481883" /translation="MMNAQDSPSTRPYLIRALYEWCTDNGFTPYLVVRVNDSVQVPRD YVNNGEIVLNVSYEATSGLQLGNDFIEFKARFGGKPCDLLIPVHRVIAIYARENGQGM AFPLDEEGGEKADVAPPRPAGVVAAPPAGAERAPVQLQSIDGSAGEGADKDAPHPPPQ TPGGGRRPSLKRIK" misc_feature 904080..904400 /locus_tag="Alide2_0863" /note="Stringent starvation protein B; Region: SspB; cl01120" /db_xref="CDD:194042" gene 904642..904717 /locus_tag="Alide2_R0007" /note="tRNA-Thr2" /db_xref="GeneID:10481884" tRNA 904642..904717 /locus_tag="Alide2_R0007" /product="tRNA-Thr" /db_xref="GeneID:10481884" gene complement(904763..905062) /locus_tag="Alide2_0864" /db_xref="GeneID:10481885" CDS complement(904763..905062) /locus_tag="Alide2_0864" /inference="similar to AA sequence:KEGG:Dtpsy_0757" /note="KEGG: dia:Dtpsy_0757 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386793.1" /db_xref="GI:330823490" /db_xref="GeneID:10481885" /translation="MNRRHYAISLHQATQESPTLARLTALTRDSSERLKAIDALIPPM LRPAIQAGPIEGDCWCLLVSSNAAAAKVRQLLPAFQAHLRSRGWEVASIRLKIQR" gene 905304..908063 /locus_tag="Alide2_0865" /db_xref="GeneID:10481886" CDS 905304..908063 /locus_tag="Alide2_0865" /inference="protein motif:HAMAP:MF_01382" /note="SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: dia:Dtpsy_0759 preprotein translocase subunit SecA; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif" /codon_start=1 /transl_table=11 /product="protein translocase subunit secA" /protein_id="YP_004386794.1" /db_xref="GI:330823491" /db_xref="InterPro:IPR000185" /db_xref="InterPro:IPR004027" /db_xref="InterPro:IPR011115" /db_xref="InterPro:IPR011116" /db_xref="InterPro:IPR011130" /db_xref="GeneID:10481886" /translation="MATNFLTKLFGSRNDRLLKQYRKTVARINAIEPEYEKLSDEALR SKTQEFKDRIAKGESLDAILPEAFAVVREGSKRVMKMRHFDVQLLGGMALHHGKIAEM RTGEGKTLTATLPVYLNALSGKGVHVVTVNDYLAGRDAQWMGRLYNFLGLTVGVNLPQ MPREEKQAAYGADITYGTNNEYGFDYLRDNMVYDSRERVQRGLNYAIVDEVDSILIDE ARTPLIISGQAEDHTAMYVAMNKVVPLLTRQEGEADPRTGEGVIKPGDFTVDEKTHQV FLTEQGHENAERILVSQGLIPEGASLYDPANISLVHHLYAALRANHLYHRDQHYVVQN GEIVIVDEFTGRLMAGRRWSEGLHQAVEAKEGVQIQAENQTLASITFQNYFRLYGKLA GMTGTADTEAYEFQEIYGLETVVIPPNRPSRRDDQLDRVYKTTREKYEAAIADIRECH ERGQPVLVGTTSIENSEIIDELLNKVGLPHQVLNAKQHAREADIVAQAGRPGMITIAT NMAGRGTDIVLGGNVEKAVAALEADESLAPEQREAQIEALRAQWKVDHDKVTALGGLR IIATERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLMRIFAGDRVKAIMDRLKMP DGEAIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDVANDQRKVIYQQRNEILDAPD LSALIAAMRDDCLTDVVRQHVPAESVEEQWDLAGLEKALASDWQVQLALQQEVQGSDA ITDEEILEKVLQAAREAFEAKVAQVGAENFTQFERMVLLQSFDTNWRDHLSALDYLRQ GIHLRGYAQKQPKQEYKREAFELFRQLIDQVKNEVTRLMMTVQVQSNAQLDEATQAME ERGEGISNVTYTSPTETGEVETLVDAQTARAKQAAVPGVRVGRNDPCPCGSGKKYKQC HGKLA" misc_feature 905310..907832 /locus_tag="Alide2_0865" /note="preprotein translocase subunit SecA; Reviewed; Region: PRK12904" /db_xref="CDD:183826" misc_feature 905985..906389 /locus_tag="Alide2_0865" /note="SecA preprotein cross-linking domain; Region: SecA_PP_bind; pfam01043" /db_xref="CDD:144583" misc_feature 906591..>906854 /locus_tag="Alide2_0865" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(906684..906695,906753..906758,906825..906833) /locus_tag="Alide2_0865" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature <907950..908045 /locus_tag="Alide2_0865" /note="hypothetical protein; Provisional; Region: PRK10396" /db_xref="CDD:182427" misc_feature 907998..908057 /locus_tag="Alide2_0865" /note="SEC-C motif; Region: SEC-C; cl12132" /db_xref="CDD:196349" gene 908139..909368 /locus_tag="Alide2_0866" /db_xref="GeneID:10481887" CDS 908139..909368 /locus_tag="Alide2_0866" /EC_number="2.3.1.1" /inference="protein motif:HAMAP:MF_01106" /note="PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: ajs:Ajs_0797 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein" /codon_start=1 /transl_table=11 /product="arginine biosynthesis bifunctional protein ArgJ" /protein_id="YP_004386795.1" /db_xref="GI:330823492" /db_xref="InterPro:IPR002813" /db_xref="GeneID:10481887" /translation="MPVNLSAPQAADLHPVAGVRIGVAEAGVRKANRKDLTVFLLDEG TTVAGVFTQNRFCAAPVQVCREHLDGGQAIRAMVVNTGNANAGTGSDGLARARATCEA LAGQLGLAASQVLPFSTGVIMEPLPVERITAALPAALADAQPAHWARAAEGIMTTDTV PKAFGTQVQIGGATVSVTGISKGAGMIRPNMATMLGFLATDACIAPDLVRDLVRDLAE QSFNRITIDGDTSTNDSFVLVATHKAAHAPITSLESSEGRALKAALLQVAQQLAQAIV RDGEGATKFITVRVEGGRTAGECRQVAYAIAHSPLVKTAFFASDPNLGRILAAVGYAG IADLDQTLIDLYLDDVHVAVQGGRNPQYREEDGQRVMKQQEITVRVVLGRGDAQDTVW TCDLSHDYVTINADYRS" misc_feature 908184..909365 /locus_tag="Alide2_0866" /note="Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group...; Region: OAT; cd02152" /db_xref="CDD:73147" misc_feature order(908295..908309,908397..908399,908502..908507, 908694..908696,908706..908708,908817..908828, 909063..909071,909078..909083,909087..909092, 909096..909098,909102..909113,909117..909122, 909129..909140,909198..909200,909324..909332) /locus_tag="Alide2_0866" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:73147" misc_feature order(908493..908498,908604..908609,908682..908684, 908691..908693,908715..908717,909348..909350, 909360..909365) /locus_tag="Alide2_0866" /note="active site pocket [active]" /db_xref="CDD:73147" misc_feature 908712..908717 /locus_tag="Alide2_0866" /note="cleavage site" /db_xref="CDD:73147" gene 909423..910295 /locus_tag="Alide2_0867" /db_xref="GeneID:10481888" CDS 909423..910295 /locus_tag="Alide2_0867" /inference="protein motif:PFAM:PF05673" /note="KEGG: dia:Dtpsy_0761 protein of unknown function DUF815; PFAM: Domain of unknown function DUF815; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386796.1" /db_xref="GI:330823493" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR008533" /db_xref="GeneID:10481888" /translation="MTDRFDQLIARAEQLISRIEAVLPRPLSAPDWSAAIAWRYRRRS GGHGVLEPVRHVAGMRLSDLKEIDAQKEKIQRNTQQFVDGRPANNVLLTGARGTGKSS LIKACLNSYAPQGLRLIEVDKADLTDLPDIVEVVSGRPEKFIIYCDDLSFEEGEGGYK ALKSILDGSVAASTPNVLVYATSNRRHLLPEQMKDNLSYTTAPDGEIHPGEVVEEKIS LSERFGLWVSFYPFSQDEYLAIVAQWLSALGVGSQDIEAARPQALVWALERGSRSGRV AYQFARDFAGRQGA" misc_feature 909438..910289 /locus_tag="Alide2_0867" /note="Predicted ATPase (AAA+ superfamily) [General function prediction only]; Region: COG2607" /db_xref="CDD:32599" misc_feature 909519..910286 /locus_tag="Alide2_0867" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 910292..910717 /locus_tag="Alide2_0868" /db_xref="GeneID:10481889" CDS 910292..910717 /locus_tag="Alide2_0868" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0762 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_004386797.1" /db_xref="GI:330823494" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="GeneID:10481889" /translation="MTRKHTEVAVGILLRQDGALLLSTRPEGKPYAGYWEFPGGKIEA GETVEQALRRELIEELGVTIGPAEVWKVTEHDYPHALVRLHWCKVHEWSGEFEMREGQ AMLWQQWPVQVRPVLPGAYPVLQWLAEERGETFDPSALD" misc_feature 910310..910612 /locus_tag="Alide2_0868" /note="The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic...; Region: MutT_pyrophosphohydrolase; cd03425" /db_xref="CDD:72883" misc_feature order(910313..910315,910409..910414,910418..910420, 910454..910456,910463..910468,910535..910537, 910589..910591) /locus_tag="Alide2_0868" /note="active site" /db_xref="CDD:72883" misc_feature order(910313..910315,910409..910414,910529..910531, 910535..910537) /locus_tag="Alide2_0868" /note="8-oxo-dGMP binding site [chemical binding]; other site" /db_xref="CDD:72883" misc_feature 910409..910477 /locus_tag="Alide2_0868" /note="nudix motif; other site" /db_xref="CDD:72883" misc_feature order(910454..910456,910463..910468) /locus_tag="Alide2_0868" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:72883" gene complement(910780..910986) /locus_tag="Alide2_0869" /db_xref="GeneID:10481890" CDS complement(910780..910986) /locus_tag="Alide2_0869" /inference="protein motif:PFAM:PF03884" /note="PFAM: Uncharacterised protein family, zinc-binding; KEGG: dia:Dtpsy_0763 protein of unknown function DUF329" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386798.1" /db_xref="GI:330823495" /db_xref="GO:0008270" /db_xref="InterPro:IPR005584" /db_xref="GeneID:10481890" /translation="MNSPANPRTVPCPTCGGPSLYGPANPFRPFCSERCKQIDLGAWA NEDFRVPAESPPEDAEYGDPKRLP" misc_feature complement(910795..910965) /locus_tag="Alide2_0869" /note="Domain of unknown function (DUF329); Region: DUF329; cl01144" /db_xref="CDD:194050" gene complement(910988..911743) /locus_tag="Alide2_0870" /db_xref="GeneID:10481891" CDS complement(910988..911743) /locus_tag="Alide2_0870" /inference="protein motif:PFAM:PF07072" /note="PFAM: Uncharacterised protein family UPF0289; KEGG: dia:Dtpsy_0764 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386799.1" /db_xref="GI:330823496" /db_xref="InterPro:IPR009777" /db_xref="GeneID:10481891" /translation="MILYEYPFNERLRTYLRLEQLFQRLGELIARTHSLDHHYALVTM FEVMDVAARADLKADVLKDLEKHKHQLDAYRGNPSISETVLDGVITQLDQCFAALNAQ SGKAGHALTENDWLMSIRSRVGIPGGTCGFDLPAYYAWQHHAPQARQHDLQDWAATLA PLAESVYLLLRLMRDSGLPQKVAAERGQFQQNLPQGRTFQLLRLRIDPALELIPEISG NRLIVSVRLMRQEEGGKLVPSNEDAAFELTLCA" misc_feature complement(910991..911743) /locus_tag="Alide2_0870" /note="Protein of unknown function (DUF1342); Region: DUF1342; cl01892" /db_xref="CDD:186493" gene complement(911826..912440) /locus_tag="Alide2_0871" /db_xref="GeneID:10481892" CDS complement(911826..912440) /locus_tag="Alide2_0871" /EC_number="2.7.1.24" /inference="protein motif:TFAM:TIGR00152" /note="TIGRFAM: Dephospho-CoA kinase; KEGG: ajs:Ajs_0802 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase" /codon_start=1 /transl_table=11 /product="dephospho-CoA kinase" /protein_id="YP_004386800.1" /db_xref="GI:330823497" /db_xref="GO:0004140" /db_xref="GO:0005524" /db_xref="InterPro:IPR001977" /db_xref="GeneID:10481892" /translation="MTTRRPIRLGVTGGIGSGKSTFAAMLQACGAALIDADGIARSVT QPDGAAIAAIRARFGPDYIDAQGALDRARMRALVFADAGAKERLEAIVHPLVGSAIAQ AAAAAGQACHRLIVFDIPLLTESGRWPRELDAVLVVDCREDTQVARVQARSGLAEDAV RAIIATQSSRATRRAAADFVVYNDGLALSDLQTMAHRVAASFGL" misc_feature complement(911886..912419) /locus_tag="Alide2_0871" /note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022" /db_xref="CDD:30195" misc_feature complement(order(911940..911942,912078..912083, 912162..912164,912330..912332,912405..912407)) /locus_tag="Alide2_0871" /note="CoA-binding site [chemical binding]; other site" /db_xref="CDD:30195" misc_feature complement(order(911892..911894,911997..911999, 912384..912389,912396..912404)) /locus_tag="Alide2_0871" /note="ATP-binding [chemical binding]; other site" /db_xref="CDD:30195" gene complement(912461..913339) /locus_tag="Alide2_0872" /db_xref="GeneID:10481893" CDS complement(912461..913339) /locus_tag="Alide2_0872" /EC_number="3.4.23.43" /inference="protein motif:PRIAM:3.4.23.43" /note="KEGG: dia:Dtpsy_0766 prepilin peptidase; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV" /codon_start=1 /transl_table=11 /product="Prepilin peptidase" /protein_id="YP_004386801.1" /db_xref="GI:330823498" /db_xref="InterPro:IPR000045" /db_xref="InterPro:IPR010627" /db_xref="GeneID:10481893" /translation="MTGSAFADAVLVGVLGLLIGSFLNVVIHRLPRMMERQWAAECAQ YAEDAGLPTQGGAAPTEQPFNLLTPRSRCPSCGHEVRWYENIPVLSYLALRGRCSGCG TRIGVRYPLVELATAALFYACALRWGWSFTTLAWCGFCAALVALALIDWDTTLLPDDI TLPLLWAGLLASVLRWIDVQPVDAVIGAAAGYVSLWLVYWGFKLATGKEGMGYGDFKL FAALGAWFGWQALVPIVLMASVIGALVGIAMKFASSLREGKYVPFGPFLAGGGLAAML WGPARIMRAIFSTLGL" misc_feature complement(912953..913279) /locus_tag="Alide2_0872" /note="Bacterial Peptidase A24 N-terminal domain; Region: DiS_P_DiS; pfam06750" /db_xref="CDD:191601" misc_feature complement(912599..>912832) /locus_tag="Alide2_0872" /note="Type IV leader peptidase family; Region: Peptidase_A24; cl02077" /db_xref="CDD:154734" gene complement(913339..914556) /locus_tag="Alide2_0873" /db_xref="GeneID:10481894" CDS complement(913339..914556) /locus_tag="Alide2_0873" /inference="protein motif:PFAM:PF00482" /note="PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein" /codon_start=1 /transl_table=11 /product="type II secretion system F domain-containing protein" /protein_id="YP_004386802.1" /db_xref="GI:330823499" /db_xref="InterPro:IPR018076" /db_xref="GeneID:10481894" /translation="MATIASRDIKDFVFEWEGKDRSGKVVRGEVRASGENQVKATLRR QGVLPTKIKKRRASGGKKIKPKDIALFTRQMATMMKAGVPLLQSFDIVGRGNTNASVT KLLNDIRADVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT EAIKSKIRSALMYPISVLVVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMAIS EFFVAYWWLIFGAIGGGFYFFMQAWKRSEKMQRTMDRFLLKMPIFGALIEKSCVARWT RTLSTMFAAGVPLVEALDSVGGASGNSVYAVATDRIQQEVSTGTSLTAAMGNANVFPS MVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVV SMYLPIFKLGQVV" misc_feature complement(913342..914520) /locus_tag="Alide2_0873" /note="Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulF; COG1459" /db_xref="CDD:31648" misc_feature complement(914035..914346) /locus_tag="Alide2_0873" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" misc_feature complement(913366..913734) /locus_tag="Alide2_0873" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene complement(914578..916317) /locus_tag="Alide2_0874" /db_xref="GeneID:10481895" CDS complement(914578..916317) /locus_tag="Alide2_0874" /inference="protein motif:TFAM:TIGR02538" /note="TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="type IV-A pilus assembly ATPase PilB" /protein_id="YP_004386803.1" /db_xref="GI:330823500" /db_xref="GO:0005524" /db_xref="GO:0008565" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR007831" /db_xref="InterPro:IPR013374" /db_xref="GeneID:10481895" /translation="MASADIAQKVAQPVALPGLARALMSVGKLNQKTAEEIYKKSQTT RTSFIAELTESNAITSSDLAHTVSSIFGAPLVDVEALDRQRLPKDLLDFKLCQAYRVV PLGKRSNRLIVATADPTNQEAAEKIKFTTQMGVDWIVAEYHKLIQLVDATAKSGSETL DSIVNSGDFEFGDISVEEASEENSEAASNEVEDAPVVRFLHKMLLDAFNMRASDLHFE PYEHNYRVRFRIDGELREIASPPIAIKEKLASRIKVISRLDISEKRVPQDGRMKLKVG PDRVIDFRVSTLPTLFGEKIVIRILDPSSAKMGIDALGYEPEEKERLLQAISRPYGMI LVTGPTGSGKTVSLYTCLNLLNKPGVNIATAEDPSEINLPGVNQVNVNEKAGLTFATA LKAFLRQDPDIIMVGEIRDLETADISIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIA PFNIASSVILITAQRLARRLCPQCKAPADIPHETLLEAGYKEEEIDGSWVTYRPVGCS ACNNGYKGRVGIYQVMPVSEETQRIILRDGSALDIAKQARQEGVRSLRESGLHKAKMG LTSLEEVLAVTNE" misc_feature complement(914581..916266) /locus_tag="Alide2_0874" /note="type IV-A pilus assembly ATPase PilB; Region: type_IV_pilB; TIGR02538" /db_xref="CDD:162908" misc_feature complement(915868..916164) /locus_tag="Alide2_0874" /note="GSPII_E N-terminal domain; Region: GSPII_E_N; pfam05157" /db_xref="CDD:191212" misc_feature complement(914767..915567) /locus_tag="Alide2_0874" /note="PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129" /db_xref="CDD:29995" misc_feature complement(915283..915306) /locus_tag="Alide2_0874" /note="Walker A motif; other site" /db_xref="CDD:29995" misc_feature complement(order(915094..915099,915217..915222, 915226..915228,915283..915291,915301..915303)) /locus_tag="Alide2_0874" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29995" misc_feature complement(915094..915111) /locus_tag="Alide2_0874" /note="Walker B motif; other site" /db_xref="CDD:29995" gene 916693..917784 /locus_tag="Alide2_0875" /db_xref="GeneID:10481896" CDS 916693..917784 /locus_tag="Alide2_0875" /inference="protein motif:PFAM:PF00589" /note="KEGG: ajs:Ajs_0807 phage integrase family protein; manually curated; PFAM: Integrase, catalytic core, phage" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004386804.1" /db_xref="GI:330823501" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10481896" /translation="MGTITKRGELQWQAKVRRRGFPAQSRTFSYKEDAERWVRAMERE LETTGFIDRREAERNTLADILLRYEKEVTPQKKSAVMESTKIKLLLRDAALTQIKTSA LSSSIVAAWRDRRLKQVSGATVNREIDILSAAINHARREWGIHIENPIPLVRRPEKAK ARDRRFSDEEMVYLLAALTGGERLSDGTFSKGARNPWLQPLVELAVETAMRRGELLSL RWECVNLDRQTAFLPDTKNGDSRMVPLSRKAVAILQELQGLAGANNAHEGPVFQTTAM ALRKGFKRALERAQQQYKEDCRAASKRPVRGFLEDVHFHDTRHEAASRLSEKLSNVLE LSAVTGHKDLRMLKRYYHPRAEDLAKKLG" misc_feature 917059..917775 /locus_tag="Alide2_0875" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature 917257..917763 /locus_tag="Alide2_0875" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature order(917323..917328,917398..917400,917629..917637, 917740..917742) /locus_tag="Alide2_0875" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature order(917323..917325,917398..917400,917635..917637, 917644..917646,917713..917715,917740..917742) /locus_tag="Alide2_0875" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature order(917323..917325,917635..917637,917644..917646, 917713..917715,917740..917742) /locus_tag="Alide2_0875" /note="active site" /db_xref="CDD:29495" gene 918106..918597 /locus_tag="Alide2_0876" /db_xref="GeneID:10481897" CDS 918106..918597 /locus_tag="Alide2_0876" /inference="protein motif:PFAM:PF01381" /note="KEGG: vap:Vapar_5848 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004386805.1" /db_xref="GI:330823502" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10481897" /translation="MNLIEIGHVVGARRAELGLTQAQLAHLSGLSRQTLVGLENGTLS DLGVNRVGQVMAVLGLDSAQPDTQARRKKRGLWMAAKTASVSYADELAPEVLEQVLAG GDVPPSFAPHLTHLLDEAPVPTVVMAVEEAAAHAHLPPRQVWRNVAKLAQSLSVHRRA LWA" misc_feature 918118..918288 /locus_tag="Alide2_0876" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene 918594..919250 /locus_tag="Alide2_0877" /db_xref="GeneID:10481898" CDS 918594..919250 /locus_tag="Alide2_0877" /inference="protein motif:PFAM:PF08843" /note="PFAM: Protein of unknown function DUF1814; KEGG: vap:Vapar_5847 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386806.1" /db_xref="GI:330823503" /db_xref="InterPro:IPR014942" /db_xref="GeneID:10481898" /translation="MKVDSLPSGAWQSLFPRALALIDDISRYGGIANPFWTLGGGTVL MFRYRHRLSKDIDIFVPDPQYLGFVTPRLSDTAADMTEDYTEQPGMFVKLQFEEGEVD FVSAPNLLDDAWDTWDIGGRAVKVETAAEIIAKKMYHRGDRATARDLFDLALVIEREP QQLLVAKPFLLRHRSAFLTQIRQPHASLQAAFGAIATLDYTPSFDHCVAVAGGFLDSL " misc_feature 918699..919208 /locus_tag="Alide2_0877" /note="Nucleotidyl transferase of unknown function (DUF1814); Region: DUF1814; cl00973" /db_xref="CDD:193992" gene 919394..920080 /locus_tag="Alide2_0878" /db_xref="GeneID:10481899" CDS 919394..920080 /locus_tag="Alide2_0878" /inference="protein motif:PFAM:PF01381" /note="KEGG: tbd:Tbd_1344 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004386807.1" /db_xref="GI:330823504" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10481899" /translation="MSSHESHVLLERQLLLQLGDRLKRLRKTQRLGTVELAARAGMTR NTLRAVESGDPAPSIGTYLRVMSILGVGGDLALLAGDVLQPAPAGSAAARSRHPAPVV HVRVRADPTRHQLQDLQSLALHEEAVRLAKADPAQVQQAKDTLQRWLATGDVRSAALW REWEDILKAGAWRKVLARTRRAQQLRQASPLVTILPPETRQAILQQVSELKKGIAFGD ELGDAPEEQP" gene 920077..920622 /locus_tag="Alide2_0879" /db_xref="GeneID:10481900" CDS 920077..920622 /locus_tag="Alide2_0879" /inference="similar to AA sequence:KEGG:Bpro_0676" /note="KEGG: pol:Bpro_0676 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386808.1" /db_xref="GI:330823505" /db_xref="GeneID:10481900" /translation="MTREELEHIIRASGDITDQYEFVIVGSQSILGAVPRPEDVFTVS MEADIYPLQAPELADRIDGAIGEGSQFHETYGYYAQGVGPETACLPAGWMQRVHRIQN RNTQDRIGYCLDVLDLFLAKVVAAREKDREFCIALLQYGYVNLEAALALVDNMPLDAK AQQTLRATIRRWARNAGRSTA" gene complement(920995..921351) /locus_tag="Alide2_0880" /pseudo /db_xref="GeneID:10481901" gene complement(921406..922209) /locus_tag="Alide2_0881" /db_xref="GeneID:10481902" CDS complement(921406..922209) /locus_tag="Alide2_0881" /inference="protein motif:PFAM:PF01695" /note="KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="IstB domain-containing protein ATP-binding protein" /protein_id="YP_004386809.1" /db_xref="GI:330823506" /db_xref="GO:0005524" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10481902" /translation="MRHDPAIASIVIMLRELKMHGMAQAVAELAEQGAPAFDAAQPIL SQLLKAETAEREVRSVAYQLKVARFPAYRDLAGFDFSHSEVNEALVRQLHRCEFLENA NNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEEEKAQGKPGQIAH RLAYADLVILDELGYLPFSTSGGALLFHLLSKLYERTSVVITTNLSFSEWANVFGDAK MTTALLDRLTHHCHILETGNDSYRFKNSSAQQPPQTTKKEKATKNLSTT" misc_feature complement(921478..922182) /locus_tag="Alide2_0881" /note="transposase/IS protein; Provisional; Region: PRK09183" /db_xref="CDD:181681" misc_feature complement(921511..921954) /locus_tag="Alide2_0881" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(921862..921885) /locus_tag="Alide2_0881" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(921598..921600,921697..921699, 921859..921882)) /locus_tag="Alide2_0881" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(921694..921711) /locus_tag="Alide2_0881" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(921532..921534) /locus_tag="Alide2_0881" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(922199..923725) /locus_tag="Alide2_0882" /db_xref="GeneID:10481903" CDS complement(922199..923725) /locus_tag="Alide2_0882" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004386810.1" /db_xref="GI:330823507" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10481903" /translation="MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLRVGEA EPHYAKRVSPSKLDPFALKLAGWLKTEAGRSRKQRRTVKQMYVDLQALGYGGSYNRVA AFARLWHEQRLVAQQTTGRGTFVPLAFGPGEAFQFDWSEDWAVLAGVRTKLQVAHFKL SHSRAFYLRAYPLQTHEMLFDAHNHAFAVLGGVPRRGIYDNMRTAVDRVRRGKERDVN ARFAAMVSHFLFEAEFCNPASGWEKGQVEKNVRDARHRLWQVVPPFPSLPDLNAWLEE RCVALWHEIEHGKLPGTVADIWTEEKNDLMPMPRPFDGFVEHTKRVSPTCLVHFERNR YSVPAPYANRPVSLRVYADRLVVAAEGQIVCEHQRLIERNHHGAGQTVYDWRHYLAVL QRKPGALRNGAPFLELPAAFKRLQAALLKQPGGDREMVEVLALVLHHDEQAVLAAVEL ALESGAASKTHILNVLHRLLDGKPAPAPVTSPQALKLSVEPQANVLRYDQLREVRYAS " misc_feature complement(922859..923704) /locus_tag="Alide2_0882" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584" /db_xref="CDD:34222" misc_feature complement(922955..923344) /locus_tag="Alide2_0882" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(923884..924774) /locus_tag="Alide2_0883" /db_xref="GeneID:10481904" CDS complement(923884..924774) /locus_tag="Alide2_0883" /inference="similar to AA sequence:KEGG:Daci_4208" /note="KEGG: dac:Daci_4208 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386811.1" /db_xref="GI:330823508" /db_xref="GeneID:10481904" /translation="MSLAPIPQSQQDRLRHIELRLRFLGEVRRPDVMLRFGIQSAAAS RDLAVYRDLAPQNIEFDSRSKGYLLGSAFSPLFPTSADQALAWLAEQLGDAIAPSSES LLPCLMPSCLSHPDLEVLACITRAIHLKQVLDIRYHSISSGASQRQIVPFALLDTGLR WHVRAFDRKSNEFRDFVLTRIQAPNVQAESSPQRHETPEHDAQWARIVELDLVPHPDQ PRPEITRMDYGLHDGSLRLKLRAAIAGYVLRKWSVDCSPDHRLRGPEYRLWLKNHLSL YGVETAVLAPGYLSNKELAA" misc_feature complement(923908..>924429) /locus_tag="Alide2_0883" /note="Predicted transcriptional regulator [Transcription]; Region: COG2378" /db_xref="CDD:32525" gene complement(924906..926075) /locus_tag="Alide2_0884" /db_xref="GeneID:10481905" CDS complement(924906..926075) /locus_tag="Alide2_0884" /inference="similar to AA sequence:KEGG:Ajs_3614" /note="KEGG: ajs:Ajs_3614 phage integrase family protein" /codon_start=1 /transl_table=11 /product="phage integrase family protein" /protein_id="YP_004386812.1" /db_xref="GI:330823509" /db_xref="GeneID:10481905" /translation="MHHASVPNPLLIPFNPRARARGTPAGFPMPSARLSCTRGRMNEL LFKMQELLNHCQAVLNAMRSSDIQEQRSTSYKTKVEYKRQAQQLLQRALIVDGGLFAV VQSTTRISTFRKRLVALEHFLGSQQEQLAREMSAPVMPAAEILHLRFFLHLKHLQALQ RLRQEGMAGERAKRRSKRQSLAGLPANWRIDLCKRAVGGRYLFSLIVLTLTGCRPSEL VDGIDVWRGKDEVTGKLLIHFRIRGAKVKGSQGQPLRTISYDSNDPHPLVVVVNELLD TQPEPRVFAQVRSAVNLTVEIRRLARSLWPNHRQPITAYCFRHQFAADLKANGDDEAT CRGLGHISAETRRLYGTAGQASKGHRLRPLQIDAERPVKPRPSGPRTKRRGEPKP" misc_feature complement(925029..925508) /locus_tag="Alide2_0884" /note="C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family include the bacteriophage lambda integrase, the...; Region: INT_REC_C; cd01182" /db_xref="CDD:29503" misc_feature complement(order(925029..925031,925131..925136, 925326..925328,925431..925436)) /locus_tag="Alide2_0884" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29503" misc_feature complement(order(925029..925031,925056..925058, 925122..925124,925131..925133,925326..925328, 925434..925436)) /locus_tag="Alide2_0884" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29503" misc_feature complement(order(925029..925031,925056..925058, 925122..925124,925131..925133,925434..925436)) /locus_tag="Alide2_0884" /note="active site" /db_xref="CDD:29503" misc_feature complement(order(925029..925031,925122..925124, 925434..925436)) /locus_tag="Alide2_0884" /note="catalytic residues [active]" /db_xref="CDD:29503" gene complement(926187..926537) /locus_tag="Alide2_0885" /pseudo /db_xref="GeneID:10481906" gene complement(926605..927519) /locus_tag="Alide2_0886" /db_xref="GeneID:10481907" CDS complement(926605..927519) /locus_tag="Alide2_0886" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004386813.1" /db_xref="GI:330823510" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10481907" /translation="MKNYIDRHRDDYGVEPICRVLQMAPSCYWRHAARQRNPQLRSQR VQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIAVARCTVERLMRAMGLQGARRG KTVRTTTPDTSAPCPLDHVNRQFKASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAVSDTSTEVST" misc_feature complement(926623..927459) /locus_tag="Alide2_0886" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(926788..927144) /locus_tag="Alide2_0886" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(927516..927839) /locus_tag="Alide2_0887" /db_xref="GeneID:10481908" CDS complement(927516..927839) /locus_tag="Alide2_0887" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004386814.1" /db_xref="GI:330823511" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10481908" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADAQRIKELEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature complement(927630..927839) /locus_tag="Alide2_0887" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene complement(928037..928113) /locus_tag="Alide2_R0008" /note="tRNA-Pro3" /db_xref="GeneID:10481909" tRNA complement(928037..928113) /locus_tag="Alide2_R0008" /product="tRNA-Pro" /db_xref="GeneID:10481909" gene complement(928139..929188) /locus_tag="Alide2_0888" /db_xref="GeneID:10481910" CDS complement(928139..929188) /locus_tag="Alide2_0888" /EC_number="2.5.1.30" /inference="protein motif:PRIAM:2.5.1.30" /note="KEGG: ajs:Ajs_0840 dimethylallyltranstransferase; PFAM: Polyprenyl synthetase" /codon_start=1 /transl_table=11 /product="trans-hexaprenyltranstransferase" /protein_id="YP_004386815.1" /db_xref="GI:330823512" /db_xref="InterPro:IPR000092" /db_xref="GeneID:10481910" /translation="MAPQAPWGASYNCRFTSPPPITLAANSPSTAATLALIADDMREV DKVIAARLQSSVPLVGSVAQYIISAGGKRLRPALLLLTCGALEYKGEQRFNLAAVVEF IHTATLLHDDVVDESTLRRGRPTANEAFGNPASVLVGDFLHTRSFQMMVEAGSMRILQ VLADATNVIAEGEVQQLMNTHDASLDEAGYLHVIRSKTAKLFEASARLAAILAGSTPD IEQACADYGQALGTAFQVIDDVLDYDGDAQEMGKNLGDDLREGKVTLPLIIAMQRGSQ AQRELLRNVIETGSADELQPVIAIIRETGALTATRDAAAAQARLAMDAAAKLPANPYT KGLLQLAAQLLERRT" misc_feature complement(928190..929086) /locus_tag="Alide2_0888" /note="octaprenyl diphosphate synthase; Provisional; Region: PRK10888" /db_xref="CDD:182813" misc_feature complement(928370..929029) /locus_tag="Alide2_0888" /note="Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685" /db_xref="CDD:173833" misc_feature complement(order(928403..928405,928418..928420, 928433..928435,928463..928465,928472..928477, 928586..928588,928595..928600,928661..928663, 928670..928672,928826..928831,928844..928849, 928853..928861,928865..928873,928880..928882)) /locus_tag="Alide2_0888" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature complement(928844..928873) /locus_tag="Alide2_0888" /note="chain length determination region; other site" /db_xref="CDD:173833" misc_feature complement(order(928403..928405,928418..928420, 928433..928435,928463..928465,928472..928477, 928598..928600,928661..928663,928826..928831, 928844..928846,928853..928858)) /locus_tag="Alide2_0888" /note="substrate-Mg2+ binding site; other site" /db_xref="CDD:173833" misc_feature complement(order(928472..928477,928598..928600, 928826..928831,928844..928846,928853..928858)) /locus_tag="Alide2_0888" /note="catalytic residues [active]" /db_xref="CDD:173833" misc_feature complement(order(928598..928600,928661..928663, 928826..928831,928844..928846,928853..928858)) /locus_tag="Alide2_0888" /note="aspartate-rich region 1; other site" /db_xref="CDD:173833" misc_feature complement(order(928397..928411,928418..928435, 928451..928456,928796..928840)) /locus_tag="Alide2_0888" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature complement(order(928403..928405,928418..928420, 928433..928435,928463..928465,928472..928477)) /locus_tag="Alide2_0888" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene 929295..929606 /locus_tag="Alide2_0889" /db_xref="GeneID:10481911" CDS 929295..929606 /locus_tag="Alide2_0889" /inference="protein motif:HAMAP:MF_01363" /note="TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: ajs:Ajs_0841 50S ribosomal protein L21; PFAM: Ribosomal protein L21" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L21" /protein_id="YP_004386816.1" /db_xref="GI:330823513" /db_xref="InterPro:IPR001787" /db_xref="GeneID:10481911" /translation="MYAVIKTGGKQYRVAAGEKIKVEQIAAEVGQEIVIDQVLAVGNG AELKVGTPLVSGATVKATVVAHGKHDKVRIFKLRRRKHYQKRQGHRQQFTELQIQAIA A" misc_feature 929295..929603 /locus_tag="Alide2_0889" /note="Ribosomal prokaryotic L21 protein; Region: Ribosomal_L21p; cl00382" /db_xref="CDD:185955" gene 929622..929879 /locus_tag="Alide2_0890" /db_xref="GeneID:10481912" CDS 929622..929879 /locus_tag="Alide2_0890" /inference="protein motif:HAMAP:MF_00539" /note="TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: dia:Dtpsy_0771 50S ribosomal protein L27; PFAM: Ribosomal protein L27" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L27" /protein_id="YP_004386817.1" /db_xref="GI:330823514" /db_xref="InterPro:IPR001684" /db_xref="GeneID:10481912" /translation="MAQKKGGGSTRNGRDSKPKMLGVKAYGGELISAGSIIVRQRGTR IHPGVNVGVGKDHTLFALVDGHVSFGTKGALSKHTVSVTPA" misc_feature 929622..929867 /locus_tag="Alide2_0890" /note="Ribosomal L27 protein; Region: Ribosomal_L27; cl00359" /db_xref="CDD:193785" gene 930005..931078 /locus_tag="Alide2_0891" /db_xref="GeneID:10481913" CDS 930005..931078 /locus_tag="Alide2_0891" /inference="protein motif:HAMAP:MF_01454" /note="TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTP-binding protein Obg/CgtA; KEGG: ajs:Ajs_0843 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related" /codon_start=1 /transl_table=11 /product="GTPase obg" /protein_id="YP_004386818.1" /db_xref="GI:330823515" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR006169" /db_xref="InterPro:IPR014100" /db_xref="GeneID:10481913" /translation="MKFVDEAFIDVAAGDGGNGCVSFRHEKYKEFGGPNGGDGGRGGH VFAVADPNLNTLVDFRYSRRHEAKRGEHGMGSDMFGAAGSDITLKMPVGTIISDANTG ELLYELLTPGEVVTIAKGGDGGFGNLRFKSAINRAPRQKTPGWPGERKSLKLELKVLA DVGLLGMPNAGKSTFIAAVSNARPKIADYPFTTLHPNLGVVRVGPEQSFVVADIPGLI EGASEGAGLGHQFLRHLQRTRLLLHVVDMAPFDESVDPVAQAKAIVVELKKYDTQLYE KPRWLVLNKLDMVPAEERAARVKDFVKRFKWKGPVFEISALTREGCEPLVKAIYQHVR AQQQAAQAPAEVDPRFAEGNPPA" misc_feature 930008..931006 /locus_tag="Alide2_0891" /note="GTPase CgtA; Reviewed; Region: obgE; PRK12299" /db_xref="CDD:183417" misc_feature 930011..930478 /locus_tag="Alide2_0891" /note="GTP1/OBG; Region: GTP1_OBG; pfam01018" /db_xref="CDD:110047" misc_feature 930482..931003 /locus_tag="Alide2_0891" /note="Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins...; Region: Obg; cd01898" /db_xref="CDD:133298" misc_feature 930500..930523 /locus_tag="Alide2_0891" /note="G1 box; other site" /db_xref="CDD:133298" misc_feature order(930509..930526,930854..930859,930863..930865, 930947..930952) /locus_tag="Alide2_0891" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133298" misc_feature 930545..930592 /locus_tag="Alide2_0891" /note="Switch I region; other site" /db_xref="CDD:133298" misc_feature 930581..930583 /locus_tag="Alide2_0891" /note="G2 box; other site" /db_xref="CDD:133298" misc_feature 930641..930652 /locus_tag="Alide2_0891" /note="G3 box; other site" /db_xref="CDD:133298" misc_feature order(930650..930673,930680..930718) /locus_tag="Alide2_0891" /note="Switch II region; other site" /db_xref="CDD:133298" misc_feature 930854..930865 /locus_tag="Alide2_0891" /note="G4 box; other site" /db_xref="CDD:133298" misc_feature 930947..930955 /locus_tag="Alide2_0891" /note="G5 box; other site" /db_xref="CDD:133298" gene 931143..932282 /locus_tag="Alide2_0892" /db_xref="GeneID:10481914" CDS 931143..932282 /locus_tag="Alide2_0892" /inference="protein motif:TFAM:TIGR01027" /note="TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; KEGG: dia:Dtpsy_0773 gamma-glutamyl kinase; SMART: Pseudouridine synthase/archaeosine transglycosylase" /codon_start=1 /transl_table=11 /product="glutamate 5-kinase" /protein_id="YP_004386819.1" /db_xref="GI:330823516" /db_xref="GO:0004349" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR002478" /db_xref="InterPro:IPR005715" /db_xref="GeneID:10481914" /translation="MVSSVLRDARRIVVKVGSSLVTNEGRGLDEVAIGEWSRQLAALV RGEGGEPREVIMVSSGAIAEGMKRLGWSARPSEIHELQAAAAVGQMGLAQMYETKLRE QAMRSAQVLLTHADLADRERYLNARSTLLTLLRLGVVPVINENDTVVTDEIKFGDNDT LGALVANLVEADVLVILTDQKGLYTADPRRDPGAQFVHEAQAGDPALEVMAGGAGSSI GKGGMITKIVAARRAAGSGASTVIAWGREPDVLLRLAQGEPIGTLLVAQTQKKQARKQ WMVDHLQLRGSVTVDAGAAAKLRDEGKSLLPIGMVAVEGDFVRGDVIAVRDAGGTEIA RGLANYASAEARLLCRRPSSEFERLLGYAAEPEMVHRDNMVVSGN" misc_feature 931146..932270 /locus_tag="Alide2_0892" /note="gamma-glutamyl kinase; Provisional; Region: PRK05429" /db_xref="CDD:180076" misc_feature 931173..931937 /locus_tag="Alide2_0892" /note="AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine)...; Region: AAK_G5K_ProB; cd04242" /db_xref="CDD:58608" misc_feature order(931197..931199,931674..931682,931689..931694, 931800..931802,931806..931808,931818..931820) /locus_tag="Alide2_0892" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58608" misc_feature order(931275..931280,931296..931298,931386..931388, 931398..931400,931467..931469,931473..931475, 931515..931520,931536..931538,931545..931547, 931575..931577,931581..931586) /locus_tag="Alide2_0892" /note="homotetrameric interface [polypeptide binding]; other site" /db_xref="CDD:58608" misc_feature 931320..931343 /locus_tag="Alide2_0892" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:58608" misc_feature order(931323..931325,931578..931580,931611..931613) /locus_tag="Alide2_0892" /note="putative allosteric binding site; other site" /db_xref="CDD:58608" misc_feature 931998..932222 /locus_tag="Alide2_0892" /note="PUA domain; Region: PUA; cl00607" /db_xref="CDD:153884" gene complement(932306..932980) /locus_tag="Alide2_0893" /db_xref="GeneID:10481915" CDS complement(932306..932980) /locus_tag="Alide2_0893" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0774 dinucleoside polyphosphate hydrolase" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_004386820.1" /db_xref="GI:330823517" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="GeneID:10481915" /translation="MLDRDGFRPNVGIILLNQRNQVFWGKRIRTHSWQFPQGGIDRGE NPEQAMFRELHEEVGLQPNQVRVIARTRDWLRYEVPDRYIRRDARGHYRGQKQIWYLL QLLGHDWDLNLRATDHPEFDAWRWNDYWVPLDVVVEFKRGVYEMALTELARFLPRYDQ RNRYLRSGMRARDPEGGGQAPMQRAGSLLVKPGMELPPGASFDPDPQGGMPAPLADAP HGSPRK" misc_feature complement(932528..932965) /locus_tag="Alide2_0893" /note="Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where...; Region: Ap4A_hydrolase_plant_like; cd03671" /db_xref="CDD:72891" misc_feature complement(order(932561..932566,932570..932572, 932696..932698,932720..932725,932732..932734, 932744..932746,932750..932752,932810..932815, 932822..932824,932867..932872,932879..932881, 932891..932893,932900..932902,932951..932953)) /locus_tag="Alide2_0893" /note="putative active site [active]" /db_xref="CDD:72891" misc_feature complement(order(932561..932566,932570..932572, 932696..932698,932720..932725,932732..932734, 932744..932746,932750..932752,932867..932872, 932879..932881,932891..932893,932900..932902, 932951..932953)) /locus_tag="Alide2_0893" /note="Ap4A binding site [chemical binding]; other site" /db_xref="CDD:72891" misc_feature complement(932801..932869) /locus_tag="Alide2_0893" /note="nudix motif; other site" /db_xref="CDD:72891" misc_feature complement(order(932810..932815,932822..932824)) /locus_tag="Alide2_0893" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:72891" gene 933082..934827 /locus_tag="Alide2_0894" /db_xref="GeneID:10481916" CDS 933082..934827 /locus_tag="Alide2_0894" /inference="protein motif:HAMAP:MF_01569" /note="TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase, class IIa, bacterial; KEGG: dia:Dtpsy_0775 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding" /codon_start=1 /transl_table=11 /product="Prolyl-tRNA synthetase" /protein_id="YP_004386821.1" /db_xref="GI:330823518" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR004154" /db_xref="InterPro:IPR004500" /db_xref="InterPro:IPR007214" /db_xref="GeneID:10481916" /translation="MKASQFFISTLKEAPADAEVVSHKLMMRAGLIKKLGAGIYSYMP MGLRVIRKVEAIVREEMNRAGAVECTMPVVQPAELWQETGRFEKMGPELLRIQDRHGR DFVIQPTSEEVVTDIARQELRSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDA YSFDRDQAGAKASYQAMAQAYRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGE DAIVYCPASDYAANMEKAEALAPAGPRPAAAAPMTRTPTPGKATCAEVAELLGVPLQT TVKSLVLATDETNEAGEIVKSQVWLLLLRGDHDMNEIKVSKVPGLDKGFRFATVTEIE AHFGAKPGYLGPIGLRKPVQVVADREVALMADWICGANEEDFHITGVNWGRDLPEPDA VADLRNVVAGDPSPDGKGVLAIERGIEVGHVFYLSTKYSKAMNATFLGEDGKPAFFEM GCYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPIGMDRSEEVRAVAEKLHGE LLASGIDVILDDRGERPGAMFADWELIGVPHRITIGDKGLKEGQVEYLHRRDAGATKV GVAEILAHVKERVAA" misc_feature 933082..934812 /locus_tag="Alide2_0894" /note="prolyl-tRNA synthetase; Provisional; Region: PRK09194" /db_xref="CDD:181689" misc_feature 933130..>933726 /locus_tag="Alide2_0894" /note="Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation...; Region: ProRS_core_prok; cd00779" /db_xref="CDD:73229" misc_feature order(933178..933183,933202..933213,933232..933234, 933283..933291,933295..933300,933358..933360, 933364..933378,933430..933432,933490..933492, 933541..933543) /locus_tag="Alide2_0894" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73229" misc_feature 933277..933300 /locus_tag="Alide2_0894" /note="motif 1; other site" /db_xref="CDD:73229" misc_feature order(933406..933408,933412..933414,933499..933501, 933505..933507,933529..933537,933544..933546, 933550..933552,933556..933558) /locus_tag="Alide2_0894" /note="active site" /db_xref="CDD:73229" misc_feature 933496..933507 /locus_tag="Alide2_0894" /note="motif 2; other site" /db_xref="CDD:73229" misc_feature 933757..934269 /locus_tag="Alide2_0894" /note="INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-...; Region: ProRS-INS; cd04334" /db_xref="CDD:88585" misc_feature order(933916..933918,934105..934110,934189..934191) /locus_tag="Alide2_0894" /note="putative deacylase active site [active]" /db_xref="CDD:88585" misc_feature <934315..934482 /locus_tag="Alide2_0894" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:193739" misc_feature order(934330..934335,934345..934347,934435..934440, 934444..934449,934456..934458) /locus_tag="Alide2_0894" /note="active site" /db_xref="CDD:29813" misc_feature order(934447..934449,934456..934458) /locus_tag="Alide2_0894" /note="motif 3; other site" /db_xref="CDD:29813" misc_feature 934525..934809 /locus_tag="Alide2_0894" /note="ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-...; Region: ProRS_anticodon_short; cd00861" /db_xref="CDD:29801" misc_feature order(934549..934554,934669..934671,934687..934689, 934711..934713,934741..934743,934747..934749) /locus_tag="Alide2_0894" /note="anticodon binding site; other site" /db_xref="CDD:29801" gene 934824..935468 /locus_tag="Alide2_0895" /db_xref="GeneID:10481917" CDS 934824..935468 /locus_tag="Alide2_0895" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_0847 lytic transglycosylase, catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic subunit" /protein_id="YP_004386822.1" /db_xref="GI:330823519" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10481917" /translation="MTAGVRRRACLAALAGGPAAWLGLPAAAHAGGQLEEPLVDSVRT ALSSAVADLAPPEPLFVTTEARLVYLRWLGAMSDRLRRSKPDWEVRRDFLQTVWYESK RAGLDVSLVLGLIQVESAFRKFAVSPVGARGYMQVMPFWSRTIGDGDAGKLFHMQTNL RFGCVILRHYLDRERGDLYMALGRYNGSRGKAPYPNAVFAAQRRWLFQDRSAEA" sig_peptide 934824..934916 /locus_tag="Alide2_0895" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.949 at residue 31" misc_feature 935145..>935405 /locus_tag="Alide2_0895" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(935175..935177,935235..935237,935319..935321, 935376..935378) /locus_tag="Alide2_0895" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 935175..935177 /locus_tag="Alide2_0895" /note="catalytic residue [active]" /db_xref="CDD:29556" gene complement(935444..936778) /locus_tag="Alide2_0896" /db_xref="GeneID:10481918" CDS complement(935444..936778) /locus_tag="Alide2_0896" /inference="protein motif:PFAM:PF01595" /note="PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: dia:Dtpsy_0777 protein of unknown function DUF21" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386823.1" /db_xref="GI:330823520" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR002550" /db_xref="InterPro:IPR005170" /db_xref="GeneID:10481918" /translation="MTLTESLFIIGLLIAASAFFSVAEISLAASRRLRLRQMADEGDA RAARVLHVQEQPGDYFTVVQVGLNAVAILGGIVGEGTLSPYFGALFGLWLPEGRAQAL GFLASFLAVTSLFILFADLCPKRLGMANPERLAVRVIGPMQLCMTLFKPVIWLYSRTA DMLLALSGLPVQRDERVTSDDILAMMEAGARAGVLAAQEQQVIANVFELDSRSVTSAM TLRERIAFFRRDDPDELIRARIAAEPFSTYPVCDGDIDHVVGYVDAKDLFQRALKNQP ISLAEEGLVRKVLIVPDRLSLAEVLAHFRQVHEDFAVIVNEYSRVVGVVTLNDVMSTV MGDLVGPADEEQIVRRDENSWLIDGTTPIEDVLHALGIDELPHAGDYETLAGFLMVML RRVPRRTDSVSVGGYLFEVLDVDSYRIDQVMVSRLGRAAQAGEEAQASAERS" misc_feature complement(935498..936778) /locus_tag="Alide2_0896" /note="Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:31445" sig_peptide complement(936707..936778) /locus_tag="Alide2_0896" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.943) with cleavage site probability 0.697 at residue 24" misc_feature complement(936182..936760) /locus_tag="Alide2_0896" /note="Domain of unknown function DUF21; Region: DUF21; pfam01595" /db_xref="CDD:190047" misc_feature complement(935786..936115) /locus_tag="Alide2_0896" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590" /db_xref="CDD:73090" misc_feature complement(935498..935737) /locus_tag="Alide2_0896" /note="Transporter associated domain; Region: CorC_HlyC; pfam03471" /db_xref="CDD:190650" gene complement(936822..937829) /locus_tag="Alide2_0897" /db_xref="GeneID:10481919" CDS complement(936822..937829) /locus_tag="Alide2_0897" /inference="protein motif:PFAM:PF00004" /note="KEGG: aav:Aave_3667 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="AAA ATPase central domain-containing protein" /protein_id="YP_004386824.1" /db_xref="GI:330823521" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="GeneID:10481919" /translation="MTSHSLVPQTSGLSLPVAQMRSVFHPGDVERRLARLQEAGSQRE YENLRVVYERMLERGPERFQVKPSGVPDMVPLYEHLPNFTDVLDDVKRHVALAQDSRD GLEVTPMLLLGPPGIGKTHFARQLAELLGTGMSLVPMSSMTAGWLLSGASSQWKGARP GKVFEALVEGEYANPVIVVDEIDKAAGDAQYDPLGALYGLLEHDTAQSFTDEFAEVAI DASQVIWITTANDERGIPEPILNRMNVFQVQAPTPSQARAIALNLYHGIRAGHDWGRL VDPEPQPAVLDLLAQMPPREMRRALMTGFGNARLARRSTVEADDLPRAAGAKGRIGFM Q" misc_feature complement(937098..937508) /locus_tag="Alide2_0897" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(937113..937508) /locus_tag="Alide2_0897" /note="AAA domain (dynein-related subfamily); Region: AAA_5; pfam07728" /db_xref="CDD:191829" misc_feature complement(937470..937493) /locus_tag="Alide2_0897" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(937146..937148,937290..937292, 937467..937490)) /locus_tag="Alide2_0897" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(937287..937304) /locus_tag="Alide2_0897" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(937104..937106) /locus_tag="Alide2_0897" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(936891..>937061) /locus_tag="Alide2_0897" /note="indolepyruvate ferredoxin oxidoreductase; Validated; Region: PRK09193" /db_xref="CDD:181688" gene complement(937970..938302) /locus_tag="Alide2_0898" /db_xref="GeneID:10481920" CDS complement(937970..938302) /locus_tag="Alide2_0898" /inference="protein motif:TFAM:TIGR00365" /note="KEGG: dia:Dtpsy_0778 glutaredoxin-like protein; TIGRFAM: Monothiol glutaredoxin-related; PFAM: Glutaredoxin" /codon_start=1 /transl_table=11 /product="glutaredoxin-like protein" /protein_id="YP_004386825.1" /db_xref="GI:330823522" /db_xref="InterPro:IPR002109" /db_xref="InterPro:IPR004480" /db_xref="GeneID:10481920" /translation="MSDVQQRIDQLVKSNDILLFMKGNASFPMCGFSGRAVQILKACG VDPKDIAAVNVLEDDEIRQGIKDYSNWPTIPQLYVKGEFIGGSDIMMEMYESGELQQV LGTQQQAG" misc_feature complement(938003..938281) /locus_tag="Alide2_0898" /note="Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain...; Region: GRX_PICOT_like; cd03028" /db_xref="CDD:48577" misc_feature complement(order(938081..938086,938207..938215, 938237..938239)) /locus_tag="Alide2_0898" /note="putative GSH binding site [chemical binding]; other site" /db_xref="CDD:48577" misc_feature complement(order(938204..938206,938213..938215)) /locus_tag="Alide2_0898" /note="catalytic residues [active]" /db_xref="CDD:48577" gene complement(938359..939204) /locus_tag="Alide2_0899" /db_xref="GeneID:10481921" CDS complement(938359..939204) /locus_tag="Alide2_0899" /EC_number="2.1.1.72" /inference="protein motif:TFAM:TIGR03534" /note="TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; KEGG: ajs:Ajs_0850 HemK family modification methylase; PFAM: Methyltransferase small" /codon_start=1 /transl_table=11 /product="protein-(glutamine-N5) methyltransferase" /protein_id="YP_004386826.1" /db_xref="GI:330823523" /db_xref="GO:0008276" /db_xref="InterPro:IPR004556" /db_xref="InterPro:IPR007848" /db_xref="InterPro:IPR019874" /db_xref="GeneID:10481921" /translation="MDGIATIAQALARAQARGLARIDAQMLLLHALGRPTGDRAWLLA HDTDPLDAPALARYQALCARRAAGEPVAYLTGSKEFYGLPLRVDARVLDPRPDTEILV DWALELLAPLPAPRVADLGTGSGAIALALQHARPDARVLAVDASAGALAVARANAERL GLPVRFVQADWLAGIAGPFDAIVSNPPYIPAQDPHLAALAHEPLSALASGADGLDDIR AIAAQAPALLAPGGWLLLEHGWDQAGAVQALLRAAGLARVQSRDDLAGIARCTGGSMP AAGRQ" misc_feature complement(938386..939144) /locus_tag="Alide2_0899" /note="N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328" /db_xref="CDD:181780" misc_feature complement(938545..939138) /locus_tag="Alide2_0899" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(939248..940363) /locus_tag="Alide2_0900" /db_xref="GeneID:10481922" CDS complement(939248..940363) /locus_tag="Alide2_0900" /inference="protein motif:HAMAP:MF_00093" /note="SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 1; KEGG: ajs:Ajs_0851 peptide chain release factor 1; HAMAP: Peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor" /codon_start=1 /transl_table=11 /product="peptide chain release factor 1" /protein_id="YP_004386827.1" /db_xref="GI:330823524" /db_xref="InterPro:IPR000352" /db_xref="InterPro:IPR004373" /db_xref="InterPro:IPR005139" /db_xref="GeneID:10481922" /translation="MVAKPISSPNPMKPFLRSQLERYAQRLSELDFLLSREDIMADMQ QYRAISREHADVTAVAGRYARYRQREADLEGAREMLEDPDMAEMAQEEIAAAEAELAQ LEDELQRMLLPKDPDDERNAFVEIRAGTGGDESALFAGDLARMYTRYAATQGWKVEVM SANESELGGYKEVVLRIEGDHAYGRLRFESGGHRVQRVPATETQGRIHTSACTVAVMP EPDEAQAITLNPADLRIDTFRASGAGGQHINKTDSAVRVVHLPTGIVAECQDGRSQHA NKAKALQVLQARIQEKERSERAAKEAALRKGLIGSGDRSDRIRTYNFPQGRLTDHRIN LTLYKLLAVMEGDLGEVLQALQHAREAELLAELETAV" misc_feature complement(939311..940327) /locus_tag="Alide2_0900" /note="peptide chain release factor 1; Validated; Region: prfA; PRK00591" /db_xref="CDD:179074" misc_feature complement(939797..940132) /locus_tag="Alide2_0900" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" misc_feature complement(939368..939703) /locus_tag="Alide2_0900" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" gene complement(940432..941745) /locus_tag="Alide2_0901" /db_xref="GeneID:10481923" CDS complement(940432..941745) /locus_tag="Alide2_0901" /inference="protein motif:TFAM:TIGR01035" /note="KEGG: dia:Dtpsy_0781 glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA reductase" /protein_id="YP_004386828.1" /db_xref="GI:330823525" /db_xref="GO:0008883" /db_xref="GO:0050661" /db_xref="InterPro:IPR000343" /db_xref="InterPro:IPR006151" /db_xref="InterPro:IPR015895" /db_xref="InterPro:IPR015896" /db_xref="GeneID:10481923" /translation="MAVWALGINHHTAPLDLRGRFAFALDQIAPTLHGLRQSLAQGAG RHPDVETAIISTCNRTEIYCAAEAPALDHTLDWLASSGGVSPSLLRSHSYTLESGLVA RHAFRVASGLDSMVLGEAQILGQMKDAVRAAKGAGALGTTLNQLFQRSFAVAKEVRTS TDIGAHSISMAAAAVRLAGQLFEDLSKIRVLFVGAGEMIELCATHFAARNPKQIAIAN RTLERGEKLATRFGGEVMRLADLPDHLHEFDAVVSCTASTLPIIGLGAVERALKKRRH RPIFMVDLAVPRDIEPEVKQLEDVYLYTVDDLASVVQTAQAHRQAAVAQAEAIIDAGV QSFMHWMELRTPAAGPSGGVVPLIRQLNTQTDEWRALEIARAKKLLAKGEDIDTVLEA LSRGLTQKMLHGTMAELRAGDAETRAQTAQTVSRLFLRSSSRNGL" misc_feature complement(940462..941745) /locus_tag="Alide2_0901" /note="glutamyl-tRNA reductase; Reviewed; Region: hemA; PRK00045" /db_xref="CDD:178819" misc_feature complement(940822..941733) /locus_tag="Alide2_0901" /note="NADP-binding domain of glutamyl-tRNA reductase; Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213" /db_xref="CDD:133452" misc_feature complement(order(941341..941343,941353..941355, 941362..941364,941374..941376,941383..941385, 941578..941580,941689..941691)) /locus_tag="Alide2_0901" /note="tRNA; other site" /db_xref="CDD:133452" misc_feature complement(order(941371..941373,941383..941385, 941389..941391,941404..941406,941569..941571, 941575..941580)) /locus_tag="Alide2_0901" /note="putative tRNA binding site [nucleotide binding]; other site" /db_xref="CDD:133452" misc_feature complement(order(941149..941151,941158..941160, 941164..941166)) /locus_tag="Alide2_0901" /note="putative NADP binding site [chemical binding]; other site" /db_xref="CDD:133452" misc_feature complement(940462..940761) /locus_tag="Alide2_0901" /note="Glutamyl-tRNAGlu reductase, dimerisation domain; Region: GlutR_dimer; pfam00745" /db_xref="CDD:189697" gene 941820..942095 /locus_tag="Alide2_0902" /db_xref="GeneID:10481924" CDS 941820..942095 /locus_tag="Alide2_0902" /inference="similar to AA sequence:KEGG:Dtpsy_0782" /note="KEGG: dia:Dtpsy_0782 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386829.1" /db_xref="GI:330823526" /db_xref="GeneID:10481924" /translation="MSPLAAINHLLNFAAPALAVAVLLVSFAHVFMRKMAKTHGWLAP IAINFIVGCAVLAAGLVLLGRDGRMLTYAALVLACATSQWLLLRAWR" sig_peptide 941820..941906 /locus_tag="Alide2_0902" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.868 at residue 29" gene complement(942212..943105) /locus_tag="Alide2_0903" /db_xref="GeneID:10481925" CDS complement(942212..943105) /locus_tag="Alide2_0903" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0783 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386830.1" /db_xref="GI:330823527" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10481925" /translation="MRMHSPSLPELHAFAAAARLGSFSRAAGELHVTQGAISRAIARL EEHLGVALFEREGRRSVLTRAGADYLDAVGPSITAIESATLAVRTRRSPRQLRLSVPP TLFSHWLIPRLPDFSARHPGIGLSFAPYRRDDPLSAPDIDAWIRIGQADWPAGITAEY LVGRELVPLCRPADLPQLRTPADLLARPLLFHTNYPGNWAHWFANVGCAHGPLVPAAD FDQVSLLVQAVIAGMGVAVVQRALVEPELAAGRIAVAIALEPPVLLDRGYHLCRPAGR APSPALENLRAWLLEQAAACA" misc_feature complement(942221..943090) /locus_tag="Alide2_0903" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(942908..943075) /locus_tag="Alide2_0903" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(942239..942823) /locus_tag="Alide2_0903" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(942413..942418,942422..942427, 942443..942460,942719..942739,942743..942745, 942755..942757,942764..942769,942773..942778)) /locus_tag="Alide2_0903" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 943231..944214 /locus_tag="Alide2_0904" /db_xref="GeneID:10481926" CDS 943231..944214 /locus_tag="Alide2_0904" /inference="similar to AA sequence:KEGG:Ajs_0855" /note="KEGG: ajs:Ajs_0855 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386831.1" /db_xref="GI:330823528" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10481926" /translation="MALRRTLLSTLAACAAAAFAPLALAQADDYPNRPVKLIVPFAPG GSTDMVARLLADKLSTVLGKAVVVDNKGGAGGSIGADAIAKAAPDGYTIGMATVSTHG ANPALYAKLPYDAVKDFAPITNVMSVPSVFVVHPGVPARTMREFVALAKAQPGKYTFA SPGTGSLGHANIENFMHLAGIELLHIPYKGAGQAMTDALAGQVNAMTDNLPSTLPNIQ SGKLRPLAVLALKRSPVLPDVPTYAELGYPGMGDGGWFGLVAPAGTPREIVARLNAAA HKAMAMPDYVEKQKSISGESMANTPEQFARQIQAAIERYTAVAKRAHIRLD" sig_peptide 943231..943308 /locus_tag="Alide2_0904" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.886 at residue 26" misc_feature 943312..944196 /locus_tag="Alide2_0904" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 943378..944202 /locus_tag="Alide2_0904" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 944214..945116 /locus_tag="Alide2_0905" /db_xref="GeneID:10481927" CDS 944214..945116 /locus_tag="Alide2_0905" /inference="protein motif:PFAM:PF05013" /note="PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase" /codon_start=1 /transl_table=11 /product="N-formylglutamate amidohydrolase" /protein_id="YP_004386832.1" /db_xref="GI:330823529" /db_xref="InterPro:IPR007709" /db_xref="GeneID:10481927" /translation="MDDDLRPRPDTPVEVWHPTAAPLPLVCDSPHSGTAYPEDFGHAV PMQLLRRGEDTYVHRLWRSAPAHGATLIAATFPRTYIDVNRAETDLDPAQIDGEWPVP LAPGPKTRQGLGLVWQQIVKDGVPTPLYARRRTVAEVQRRIERYWRPYHAQLAQAIDA SVRRFGGVWHLNLHSMPNDVYKRLGRVDAPQLADFVLGDRDGTTCAPEFVHLIADTLK GFGYSVAVNEPYKGVELIGRIGQPQLNRHSLQIEIRRPVYMDEDTRAPHAGFAPLQQH LDLLLGVVAQYVRGRLAGSEQNWP" misc_feature 944277..944993 /locus_tag="Alide2_0905" /note="N-formylglutamate amidohydrolase; Region: FGase; cl01522" /db_xref="CDD:194156" gene complement(945160..947592) /locus_tag="Alide2_0906" /db_xref="GeneID:10481928" CDS complement(945160..947592) /locus_tag="Alide2_0906" /inference="protein motif:PFAM:PF00924" /note="PFAM: Mechanosensitive ion channel MscS; Protein of unknown function DUF3772; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel" /codon_start=1 /transl_table=11 /product="MscS Mechanosensitive ion channel" /protein_id="YP_004386833.1" /db_xref="GI:330823530" /db_xref="InterPro:IPR006685" /db_xref="InterPro:IPR022249" /db_xref="GeneID:10481928" /translation="MRLPDNARMQRHRFLPWLFLLCLAASLSLWPAQAENRTAATAAA EQSADEPPLPPVDELRRQLDALPQKIGEQDDGRKLLAEVNAIGAAAERLAARRTADLA DVDLRLSGLGPAPEKGSPADTPDVAEQRAALNKQRTAIDAELKLARLVAVDAAQRGTD LIRQRRAQFQAQLTTRTDSPLGITFWRNLRNSAPTDGARLRALAGELRDAAATAAQPP HRAAFAGYLALALLLAVAGTWAAEHILMRVLPPRLPAARLRRSLLAASAIAANVLIIS AALQFVWSGVALGGPLPENLRALQQATLRAAAYAAFTITLGHALLSPRRSSWRLLPIS DGLARRLARFPWWMGLLSALGVLVADVNDIVGASLAAEVLVHAAFALLVSATMAMALG RMRVGEAQPDAPPQPLWVGLLLAGAGIAVATAVLAVALGFVALAGTLARQMAWSSVVF ASIYLLAHLTDDLCDAILSSRGGFGARIHATLGIDAPLLDQAAVLISGVLRVALFFYM LIALMAPFGTGPDELFRRGTNVDHSLRIGDLALAPQALFTALAVICGGFLAIRMSKRW LTERYFPHTTLEPGMRSSIVTLLGYVGGVLVIAVALAGLGISVERIAWVASALSVGIG FGLQAIVQNFISGLILLAERPVKVGDWVVLGDTEGDVRRVNVRATEIQLGDRSTVIVP NSEFITKTVRNVTAGSAQGRVLLRLPAPLDTDARRMRELILQAFQAHQAVLEAPAPSV TLEGIQSGTLTFLAIGYVGSPRDVGGVRSDLLFSILDALREAGLALSPPATTSVAQRE PPPEPPPLSERT" sig_peptide complement(947488..947592) /locus_tag="Alide2_0906" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.663) with cleavage site probability 0.656 at residue 35" misc_feature complement(946969..947160) /locus_tag="Alide2_0906" /note="Protein of unknown function (DUF3772); Region: DUF3772; pfam12607" /db_xref="CDD:153041" misc_feature complement(945226..>946587) /locus_tag="Alide2_0906" /note="Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: COG3264" /db_xref="CDD:33075" misc_feature complement(945235..945759) /locus_tag="Alide2_0906" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" gene complement(947621..948370) /locus_tag="Alide2_0907" /db_xref="GeneID:10481929" CDS complement(947621..948370) /locus_tag="Alide2_0907" /EC_number="3.1.4.46" /inference="protein motif:PRIAM:3.1.4.46" /note="KEGG: dia:Dtpsy_0787 glycerophosphodiester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase" /codon_start=1 /transl_table=11 /product="glycerophosphodiester phosphodiesterase" /protein_id="YP_004386834.1" /db_xref="GI:330823531" /db_xref="InterPro:IPR004129" /db_xref="GeneID:10481929" /translation="MSTLASTTWPYPRWIAHRGAGRLAPENTLAAFRLGAQHGYRMFE CDAKLSGDGVVFLMHDATLERTTSGHGIGGERPWSDLAQLDAGGWHSRQYAGEPLPTL ANVAHWCIANGCHLNIEIKPTPGTELETGRAVAQLAARLWQGRDVPPLLTSFKPQALA AAREAAPDLPRGLLLDQLRAGWLDEARTLGCLAVVCNHALWSAATVAEVHGAGLRALS YTVNDEWAAERLIALRTDGIITDRVDLFPPA" misc_feature complement(947645..948328) /locus_tag="Alide2_0907" /note="Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins; Region: GDPD_EcUgpQ_like; cd08562" /db_xref="CDD:176505" misc_feature complement(947636..948322) /locus_tag="Alide2_0907" /note="Glycerophosphoryl diester phosphodiesterase family; Region: GDPD; pfam03009" /db_xref="CDD:145909" misc_feature complement(order(947714..947716,947915..947917, 948014..948016,948194..948196,948233..948235, 948239..948241,948320..948322)) /locus_tag="Alide2_0907" /note="putative active site [active]" /db_xref="CDD:176505" misc_feature complement(order(948194..948196,948320..948322)) /locus_tag="Alide2_0907" /note="catalytic site [active]" /db_xref="CDD:176505" misc_feature complement(order(948014..948016,948233..948235, 948239..948241)) /locus_tag="Alide2_0907" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176505" gene complement(948377..949384) /locus_tag="Alide2_0908" /db_xref="GeneID:10481930" CDS complement(948377..949384) /locus_tag="Alide2_0908" /EC_number="3.6.3.20" /inference="protein motif:PRIAM:3.6.3.20" /note="PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ctt:CtCNB1_0786 sn-glycerol-3-phosphate transport ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate-transporting ATPase" /protein_id="YP_004386835.1" /db_xref="GI:330823532" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013611" /db_xref="GeneID:10481930" /translation="MASISLKNIVKRYGSGKSAVPVIHGVNAEIKDGEFIVLVGPSGC GKSTLLRMIAGLEEITGGELFIGDRLVNGLEPARRNIAMVFQNYALYPHMTNFENMAY GLKLAKVPKDEIRRRVDKAAKILELSHLLERKPRELSGGQRQRVAMGRAIVREPQVFL FDEPLSNLDAKLRGQTRIEIQKLHTELGITSLFVTHDQVEAMTLAQRMIVMNAGNVEQ FGTPEEVYHEPATTFVASFIGSPPMNLLKQAPGGQPGRILGIRPEHIDLVESGGWEFK VETLELLGAERLLYGKVGDEDLTVRTEEDKPYPKPGETTRIAPRRDRVHWFSLETGKR V" misc_feature complement(948380..949384) /locus_tag="Alide2_0908" /note="glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650" /db_xref="CDD:183258" misc_feature complement(948725..949375) /locus_tag="Alide2_0908" /note="The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two...; Region: ABC_MalK_N; cd03301" /db_xref="CDD:73060" misc_feature complement(949244..949267) /locus_tag="Alide2_0908" /note="Walker A/P-loop; other site" /db_xref="CDD:73060" misc_feature complement(order(948797..948799,948896..948901, 949127..949129,949241..949249,949253..949258)) /locus_tag="Alide2_0908" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73060" misc_feature complement(949127..949138) /locus_tag="Alide2_0908" /note="Q-loop/lid; other site" /db_xref="CDD:73060" misc_feature complement(948944..948973) /locus_tag="Alide2_0908" /note="ABC transporter signature motif; other site" /db_xref="CDD:73060" misc_feature complement(948896..948913) /locus_tag="Alide2_0908" /note="Walker B; other site" /db_xref="CDD:73060" misc_feature complement(948878..948889) /locus_tag="Alide2_0908" /note="D-loop; other site" /db_xref="CDD:73060" misc_feature complement(948791..948811) /locus_tag="Alide2_0908" /note="H-loop/switch region; other site" /db_xref="CDD:73060" misc_feature complement(948404..948613) /locus_tag="Alide2_0908" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene complement(949445..950293) /locus_tag="Alide2_0909" /db_xref="GeneID:10481931" CDS complement(949445..950293) /locus_tag="Alide2_0909" /inference="protein motif:PFAM:PF00528" /note="PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0789 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386836.1" /db_xref="GI:330823533" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10481931" /translation="MVDRNPWLTFLSHAVLVLGVSIVAFPLYLALVASTHTAEAIVQS PMPLLPGSHLWENYRNALLGSGKLGSTTNVVHMMWVSFVVAITITLGKIAISLLSAFA IVYFRFPFKMLCFWAIFLTLMLPVEVRILPTYKVVADLGLLNSYAGLSLPLIASATAT FLFRQFFLTVPDELVEAARIDGAGPMRFFKDILVPLSRTSIAALFVIQFIYGWNQYLW PLLMTTSEDMYPVVIGIKRMLAGGEAAVDWNIVMATAILAMLPPTLVVILMQKWFVKG LVDTEK" misc_feature complement(949460..950293) /locus_tag="Alide2_0909" /note="ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395" /db_xref="CDD:30744" misc_feature complement(949511..950062) /locus_tag="Alide2_0909" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(949517..949522,949529..949534, 949538..949543,949550..949555,949589..949594, 949631..949636,949643..949654,949673..949675, 949682..949687,949727..949729,949778..949780, 949787..949792,949802..949804,949808..949813, 949820..949822,949826..949828,949892..949894, 949898..949903,949910..949939,949943..949954, 949982..949984,949997..950002,950009..950014)) /locus_tag="Alide2_0909" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(949637..949654,949892..949936)) /locus_tag="Alide2_0909" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(949553..949555,949589..949591, 949598..949600,949634..949636,949832..949834, 949892..949894)) /locus_tag="Alide2_0909" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(949706..949708,949718..949723, 949739..949777)) /locus_tag="Alide2_0909" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(950301..951182) /locus_tag="Alide2_0910" /db_xref="GeneID:10481932" CDS complement(950301..951182) /locus_tag="Alide2_0910" /inference="protein motif:PFAM:PF00528" /note="PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ctt:CtCNB1_0788 sn-glycerol-3-phosphate transport systempermease protein UgpA" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386837.1" /db_xref="GI:330823534" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10481932" /translation="MEKRVLFRSAWLPWVLIAPQLAIIGVFFFWPAGQAVLQSFQMED AFGMSREWVGLDNFRQLLTNPDYLGAFQRTALFSVLVAGIGIVVSLALAIYADRIVRF AMVYKTLLIVPYAVAPVIAGVLWVFLFSPSIGVVTHYLGRLGYQWNHLMNENQAMTLI VLASVWKQISYNFLFFLAGLQSIPRALIEAASIDGAGPWRRFWNIQLPLLSPTSFFLL VINIVYAFFDTFGIIDAATQGGPGQSTSILVYKVYLDGFKALDLGGSAAQSVILMCIV VVLTVIQFRYVEKKVQY" misc_feature complement(950316..951182) /locus_tag="Alide2_0910" /note="ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]; Region: LplB; COG4209" /db_xref="CDD:33938" misc_feature complement(<950487..950972) /locus_tag="Alide2_0910" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(950493..950504,950523..950525, 950532..950537,950577..950579,950628..950630, 950637..950642,950652..950654,950658..950663, 950670..950672,950676..950678,950685..950690, 950805..950807,950811..950816,950823..950852, 950856..950867,950892..950894,950907..950912, 950919..950924)) /locus_tag="Alide2_0910" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(950487..950504,950805..950849)) /locus_tag="Alide2_0910" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(950556..950558,950568..950573, 950589..950627)) /locus_tag="Alide2_0910" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(951253..952566) /locus_tag="Alide2_0911" /db_xref="GeneID:10481933" CDS complement(951253..952566) /locus_tag="Alide2_0911" /inference="protein motif:PFAM:PF01547" /note="PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dia:Dtpsy_0791 extracellular solute-binding protein family 1" /codon_start=1 /transl_table=11 /product="family 1 extracellular solute-binding protein" /protein_id="YP_004386838.1" /db_xref="GI:330823535" /db_xref="GO:0005215" /db_xref="InterPro:IPR006059" /db_xref="GeneID:10481933" /translation="MQFKQLGLAACMFATGLAAQAQTEIQWWHSMTAVNNEWVNDLAK QFNESQKDYKVTPIFKGTYDESMTAAIAAFRSGNQPHILQVFEVGTATMMASRGASVP VAKVMKDAGADFNPAAYIPAVAAYYTAPDGQILSLPFNSSTTVAYYNKDAFKKAGLDP DKLPTTWPEVFEAAKKLKASGHSCPMTLAWQGWTQLESFSAWHNVEFATHKNGLAADG YKARLKINSPLHVRHIDNLAQAAKNGEFVYKGRGSTAQASFTAGECAMIQTSSGFYGD VAKNAKFAYGIAPLPYYPDVKGAPQNTVIGGASLWVMSGKKPEEYKGVAKFFEFLSQT KVQAASHQRTGYLPITMAAFDLTDKSGFYQKHPGTDVAVNQMIRKVTDNSRGIRLGNY VQVRAIEDEELEQVWAGKKSGKQALDAIVTRGNELLTRFERSYKK" sig_peptide complement(952501..952566) /locus_tag="Alide2_0911" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.961 at residue 22" misc_feature complement(951274..952551) /locus_tag="Alide2_0911" /note="ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653" /db_xref="CDD:31839" misc_feature complement(951259..952542) /locus_tag="Alide2_0911" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 952898..954127 /locus_tag="Alide2_0912" /db_xref="GeneID:10481934" CDS 952898..954127 /locus_tag="Alide2_0912" /EC_number="1.1.1.95" /inference="protein motif:PRIAM:1.1.1.95" /note="KEGG: ajs:Ajs_0863 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; Amino acid-binding ACT; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain" /codon_start=1 /transl_table=11 /product="phosphoglycerate dehydrogenase" /protein_id="YP_004386839.1" /db_xref="GI:330823536" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:10481934" /translation="MPKTSLDKSKIKFLLLEGVHPSAVQVLRAAGYTQVEVLPGALEG EELRRKIADVHFLGIRSRTQLTADVFAHAHKLVAVGCFCIGTNQVDLDAARERGIAVF NAPYSNTRSVAELVLAEAILLLRGVPEKNAAAHRGGWLKSATNAYEIRGKTLGIVGYG SIGTQLSVLAESLGMQVIFHDVVAKLPLGNARQAPGLQELLAQSDIVSLHVPELPSTQ WMIGADQIAAMKPGGILINASRGTVVEIEPLAQAIRDKKLLGAAVDVFPVEPKSNKDE FVSPLRGLDNVILTPHIGGSTMEAQANIGLEVAEKLVRYSDNGTSTSSVNFPEVALPA HPGKHRLLHIHRNVPGVLSQINSILSDNQINIAGQYLQTNEAVGYVVIDLDARSSDLA LEKLAQVPGTIRSRVLF" misc_feature 952898..954124 /locus_tag="Alide2_0912" /note="D-3-phosphoglycerate dehydrogenase; Provisional; Region: PRK11790" /db_xref="CDD:183316" misc_feature 953270..953779 /locus_tag="Alide2_0912" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 953915..954121 /locus_tag="Alide2_0912" /note="C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria; Region: ACT_3PGDH; cd04901" /db_xref="CDD:153173" misc_feature order(953930..953932,953936..953938,953990..953992) /locus_tag="Alide2_0912" /note="L-serine binding site [chemical binding]; other site" /db_xref="CDD:153173" misc_feature order(953936..953938,953942..953944,953951..953956, 953963..953965,953990..953992,953996..954016) /locus_tag="Alide2_0912" /note="ACT domain interface; other site" /db_xref="CDD:153173" gene 954249..958166 /locus_tag="Alide2_0913" /db_xref="GeneID:10481935" CDS 954249..958166 /locus_tag="Alide2_0913" /inference="protein motif:PFAM:PF01565" /note="PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich domain; KEGG: dia:Dtpsy_0793 FAD linked oxidase domain protein" /codon_start=1 /transl_table=11 /product="FAD linked oxidase domain-containing protein" /protein_id="YP_004386840.1" /db_xref="GI:330823537" /db_xref="GO:0003824" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR004017" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="GeneID:10481935" /translation="MNAPIALAALQAQGSEPVRLREIPYNYTSFSDREIVIRLLGAQA WDVLDHLRRERRTGRSARMLYEVLGDIWAVQRNPYLQDDLIHNPQRRKMLVDAMRHRM GEIEKRRTPQEDPERDRRVAQLVEAANRAIAEFDATLVEVAGMRKLVARRLARHTAKD NIKFDGLSRVSHVTDATDWRVEFPFVVLTPDTEGETAALVKECIELDLTIIPRGGGTG YTGGAIPLSWRSAVINTEKLEAMTEVEMVRLPGLAHDVPTVWTEAGVVTQRVADAAER GGYVFAVDPTSIEASCIGGNIAMNAGGKKAVLWGTALDNLASWRMVTPQAQWLEVTRI NHNLGKIHDAEVASFELAYFEADGRTPVRTERLDIPGKSFRKEGLGKDVTDKFLSGLP GVQKEGTDGLITSARWIVHRMPAHTRTVCLEFFGSAKEAVPSIVEIKDFMFAEQKRSG VLLAGLEHLDDRYLKAVGYATKSKKGGGRLPKMVLIGDLVGDDADAVARATAEVVRIA NSRSGEGFTAVSSEARKQFWLDRKRTAAISRHTNAFKINEDVVIPLPRMAEYTDGIER INIELSLRNKLKLCDALQDFFARPDLPCAKQGDALPDAELLGDRVAQAQALVAEVRAL WQGWLDDVARLFPQLQDHSLRASWKTQLRQPLAEIFVGAAFEPLMQEAAAIHKQVLKG RVWVALHMHAGDGNVHTNIPVNSDDYEMLQTAHEAVGRIMQLARSLDGVISGEHGIGI TKLEFLSDEELAPFADYKRRIDPQGHFNRGKLLRNQELQGQVYQALEANSAHNGPRRS LPFADLTNAYTPSFGLMGYESLIMQQSDIGQIVASVKDCLRCGKCKPVCSTHVPRANL LYSPRNKILATSLLAEAFLYEEQTRRGISSHHWQEFEDVADHCTICHRCYNPCPVKID FGDVTMAMRSLLVKMNKKSWRPGNKLAMAMLNATDPRTINLLRAGMVNVGFKAQRLAV DALRSVSKAQTARPPATVGTAPIKEQVIHFVNKKLPGGLPTRTARALLDIENKDYVPI IRDPQTSADSEAVFYFPGCGSERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRG NGLQDKAEKMITDNRVLFHRVANTLNYLDIKTVVVSCGTCYDQLQGYEFDKIFPGSRI IDIHEYLLEKGITLPAGQGYLYHEPCHNPMKLGDSMKTVRALVGDKVLKSDRCCGESG TLGVSRPDVSTQVRFRKTEEIRKGEAQLRGSGAVGATDNIKILTSCPSCLQGISRYQD DLQTGLLEADYIVIEMARQILGENWLPEYVQRANAGGIERVLV" misc_feature 954294..954659 /locus_tag="Alide2_0913" /note="Protein of unknown function (DUF3683); Region: DUF3683; pfam12447" /db_xref="CDD:152881" misc_feature 954702..>955949 /locus_tag="Alide2_0913" /note="FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277" /db_xref="CDD:30625" misc_feature 954798..955244 /locus_tag="Alide2_0913" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" misc_feature <956319..956564 /locus_tag="Alide2_0913" /note="FAD linked oxidases, C-terminal domain; Region: FAD-oxidase_C; pfam02913" /db_xref="CDD:190474" misc_feature 956736..>957032 /locus_tag="Alide2_0913" /note="Heterodisulfide reductase, subunit C [Energy production and conversion]; Region: HdrC; COG1150" /db_xref="CDD:31344" misc_feature 956913..958103 /locus_tag="Alide2_0913" /note="Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:30596" misc_feature 958020..958163 /locus_tag="Alide2_0913" /note="Domain of unknown function (DUF3400); Region: DUF3400; pfam11880" /db_xref="CDD:152316" gene 958163..958615 /locus_tag="Alide2_0914" /db_xref="GeneID:10481936" CDS 958163..958615 /locus_tag="Alide2_0914" /inference="protein motif:PFAM:PF01230" /note="PFAM: Histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein" /codon_start=1 /transl_table=11 /product="histidine triad (HIT) protein" /protein_id="YP_004386841.1" /db_xref="GI:330823538" /db_xref="InterPro:IPR001310" /db_xref="GeneID:10481936" /translation="MTTAPACPLCDADGGALIWRGAQLRVIRAEEAGFPAFYRVIWNA HAAEFSDLTPAERRHCMEAVAIVEQALREQLSPAKINLATLGNVVPHLHWHVIARYEW DSHFPAPVWAPPQRASDGAHEAAVVDRLPALHGLIRERLDRWAAQAGA" misc_feature 958181..958480 /locus_tag="Alide2_0914" /note="HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the...; Region: HIT_like; cl00228" /db_xref="CDD:193721" misc_feature order(958241..958243,958247..958249,958271..958273, 958277..958279,958427..958429,958439..958441, 958445..958447) /locus_tag="Alide2_0914" /note="nucleotide binding site/active site [active]" /db_xref="CDD:29586" misc_feature order(958433..958435,958439..958441,958445..958453) /locus_tag="Alide2_0914" /note="HIT family signature motif; other site" /db_xref="CDD:29586" misc_feature 958439..958441 /locus_tag="Alide2_0914" /note="catalytic residue [active]" /db_xref="CDD:29586" gene 958692..959111 /locus_tag="Alide2_0915" /db_xref="GeneID:10481937" CDS 958692..959111 /locus_tag="Alide2_0915" /inference="protein motif:PFAM:PF06155" /note="PFAM: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal; KEGG: dia:Dtpsy_0795 protein of unknown function DUF971" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386842.1" /db_xref="GI:330823539" /db_xref="InterPro:IPR010376" /db_xref="GeneID:10481937" /translation="MAGLTTGAPTPQSITVHEQSRVLEVVFSDGAHFRIPFELMRVYS PSAEVQGHGPGQQVLQTGKRDVTITALAPVGNYAVQPSFSDGHDSGIFSWNYLYELGR DAQALWADYLDRLAAAGLDRDAPMAPKARGGHGCGGH" misc_feature 958731..958985 /locus_tag="Alide2_0915" /note="Protein of unknown function (DUF971); Region: DUF971; cl01414" /db_xref="CDD:194131" gene 959189..959920 /locus_tag="Alide2_0916" /db_xref="GeneID:10481938" CDS 959189..959920 /locus_tag="Alide2_0916" /inference="protein motif:TFAM:TIGR01934" /note="KEGG: dia:Dtpsy_0796 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: UbiE/COQ5 methyltransferase" /codon_start=1 /transl_table=11 /product="ubiquinone/menaquinone biosynthesis methyltransferase" /protein_id="YP_004386843.1" /db_xref="GI:330823540" /db_xref="GO:0008168" /db_xref="InterPro:IPR004033" /db_xref="GeneID:10481938" /translation="MSTTHFGFQSVREEDKARHVRGVFDSVAPKYDLMNDLMSAGLHR AWKAYTVMVANLREGDQVLDIAGGTGDLSLAFSRKVGTTGRVVHTDINEAMLRVGRDR LIDKGVMLPTLVCDAEHLPFPDNHFDLVSVAFGLRNMTHKDAALREMCRVLKARGRLL VLEFSKVAKPLERAYDWYSFQVLPRLGKLVAGDDSSYRYLAESIRMHPGQEELKSLMQ QSGFGHVDYHNMTGGIVALHVGIKC" misc_feature 959234..959914 /locus_tag="Alide2_0916" /note="ubiE/COQ5 methyltransferase family; Region: Ubie_methyltran; pfam01209" /db_xref="CDD:110227" misc_feature 959372..959671 /locus_tag="Alide2_0916" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(959381..959401,959456..959461,959531..959539, 959582..959584) /locus_tag="Alide2_0916" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" misc_feature <959534..959914 /locus_tag="Alide2_0916" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 959962..960960 /locus_tag="Alide2_0917" /db_xref="GeneID:10481939" CDS 959962..960960 /locus_tag="Alide2_0917" /inference="protein motif:PFAM:PF04280" /note="KEGG: dia:Dtpsy_0797 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45" /codon_start=1 /transl_table=11 /product="import inner membrane translocase subunit Tim44" /protein_id="YP_004386844.1" /db_xref="GI:330823541" /db_xref="GO:0015450" /db_xref="InterPro:IPR007379" /db_xref="GeneID:10481939" /translation="MKLWSVLLVAMLALVHLDADARRLGGGKSMGRQSSNVTQREAGN PPAAPAAPVQNAANSAPAKPAAAPNAAAAAPKKPWGAMLGGLAAGLGLAWLAHSLGLG AEFGQFLLIALLALAVMVVIGMVMRSRRPAASQEGAAPFAFQGAGAATPAEAQAPRQY SPDKVGNDASARPWESTGMAYQAPATGGGSMIGSALAGSQNWGVPADFDVAGFLAAAK RNFTTLQAAWDRSDIATLRSMMTDGMVDEIRAQLSERESHRGGEQPNHTDVVMLEAQL LGIEDLGDGYMASVEFSGMIREEPSAGPSPFREVWNMTKPKNGSVGWLVAGVQALQ" misc_feature 960544..960951 /locus_tag="Alide2_0917" /note="Tim44-like domain; Region: Tim44; cl09208" /db_xref="CDD:195818" gene 961035..961595 /locus_tag="Alide2_0918" /db_xref="GeneID:10481940" CDS 961035..961595 /locus_tag="Alide2_0918" /inference="similar to AA sequence:KEGG:Dtpsy_0798" /note="KEGG: dia:Dtpsy_0798 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386845.1" /db_xref="GI:330823542" /db_xref="GeneID:10481940" /translation="MATQSPFSFLDGFFERIAAGPQPPAWLVHELQHRLVLFLNHVLM QEREAMERLARQRGRVARVQWRVYSMALQVTPAGLLDLAPQGALPDLRLEVSETSPLS LAKGALRGDKPTIRIEGDVQLAGEINWLVDHVRWDVEEDLARVIGDAPARAVAGMAGR VAGALRRFVGGRMASGLDGTSDRPTS" misc_feature 961149..961406 /locus_tag="Alide2_0918" /note="SCP-2 sterol transfer family; Region: SCP2; cl01225" /db_xref="CDD:194071" gene 961592..963157 /locus_tag="Alide2_0919" /db_xref="GeneID:10481941" CDS 961592..963157 /locus_tag="Alide2_0919" /inference="protein motif:TFAM:TIGR01982" /note="KEGG: dia:Dtpsy_0799 putative ubiquinone biosynthesis protein UbiB; TIGRFAM: Probable ubiquinone biosynthesis protein UbiB; PFAM: ABC-1" /codon_start=1 /transl_table=11 /product="2-polyprenylphenol 6-hydroxylase" /protein_id="YP_004386846.1" /db_xref="GI:330823543" /db_xref="InterPro:IPR004147" /db_xref="InterPro:IPR010232" /db_xref="GeneID:10481941" /translation="MSRFFRGLTIVWVVLRYGLDELVLSSFNRPWLRVFTRVITLGRN LDAPRGQRLREALERLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPGIAI ATIERSFRRPIGEIFVSFEREPVASASIAQVHFAVIRDRQGIERDVAVKVLRPGMLPV IDKDLALMRMMAGWVEGLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNM EGLDLVLIPEVFWDFCHADVAVMERMNGVPINQVERLRAAGVDIPKLARDGVTIFFTQ VFRDGFFHADMHPGNIQVSLDQSTFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRD YKRVAELHIESGWVPASTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRF QVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLEQLGPQRMWRELRA EAPHYAKILPDLPRLLHDFLRQRPHDGRADLQELLAAQKRTNRLLQSLLYGGLGFVLG LLAMQLFVRIRFF" misc_feature 961592..963082 /locus_tag="Alide2_0919" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" misc_feature 961601..962926 /locus_tag="Alide2_0919" /note="2-polyprenylphenol 6-hydroxylase; Region: UbiB; TIGR01982" /db_xref="CDD:162638" gene 963209..964660 /locus_tag="Alide2_0920" /db_xref="GeneID:10481942" CDS 963209..964660 /locus_tag="Alide2_0920" /inference="protein motif:PFAM:PF00474" /note="PFAM: Sodium/solute symporter; KEGG: dia:Dtpsy_0800 Na+/solute symporter" /codon_start=1 /transl_table=11 /product="Na+/solute symporter" /protein_id="YP_004386847.1" /db_xref="GI:330823544" /db_xref="GO:0005215" /db_xref="InterPro:IPR001734" /db_xref="GeneID:10481942" /translation="MLLFMVIAYLFVTIGIGLWAAQRVKNTADFAIAGRHLPMYMIIT TTFATWFGSEIVLGVPAKFIQGGLNAVVEDPFGAGMCLILVGLFFAAKLYRMTLLTIS DYYRERYGRAVEVICSLIIMLSYLGWVSAQVTALGLVFNLLSGGTVSIPWGMAIGVLS ILVYTLWGGMWSVAVTDFIQMIILVLGLVVLSWFAADMAGGADKVIDLVTSRDMLRFW PEPTWHEVLFFFGAAITMMLGSIPQQDVFQRVMSANTERAATHGTVIGGSAYILFAFV PMFLVASALLIMPEQAAQLLREDPQKVLPTLVMERMPLLMQVLFFGALLSAIKSCASA TLLAPSVTFTENIWRQFRPEYISDREKLLAMRISVLVFAAGVLFYSIKMEGTPIYELV SSAYQVPLVGAFVPLVFGLYWKRANTQGAVCAVMMGIGVWLVFMLTPALHEAFPQQLA GLLSAVFGMVAGSLTPQLVRNTRAPHHRVVGVE" misc_feature 963209..964600 /locus_tag="Alide2_0920" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" gene 964723..965004 /locus_tag="Alide2_0921" /db_xref="GeneID:10481943" CDS 964723..965004 /locus_tag="Alide2_0921" /inference="protein motif:TFAM:TIGR02605" /note="SMART: Regulatory protein, FmdB, putative; manually curated; TIGRFAM: Regulatory protein, FmdB, putative; KEGG: dia:Dtpsy_0801 regulatory protein, FmdB family; PFAM: Regulatory protein, FmdB, putative" /codon_start=1 /transl_table=11 /product="regulatory protein, FmdB family" /protein_id="YP_004386848.1" /db_xref="GI:330823545" /db_xref="InterPro:IPR013429" /db_xref="GeneID:10481943" /translation="MPIYAYRCGTCGHAKDVLQKISDAPLTVCPACGAQAFAKQVTAA GFQLKGSGWYVTDFRGGANGAASAPVAQDAPKTEAASAAPASPASSSDA" misc_feature 964723..964926 /locus_tag="Alide2_0921" /note="Zinc ribbon domain; Region: CxxC_CxxC_SSSS; cl00993" /db_xref="CDD:197419" gene 965018..965641 /locus_tag="Alide2_0922" /db_xref="GeneID:10481944" CDS 965018..965641 /locus_tag="Alide2_0922" /inference="protein motif:PFAM:PF04367" /note="PFAM: Protein of unknown function DUF502; KEGG: dia:Dtpsy_0802 protein of unknown function DUF502" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386849.1" /db_xref="GI:330823546" /db_xref="InterPro:IPR007462" /db_xref="GeneID:10481944" /translation="MAALRKWLFTGLLVIVPGVITAWVLSWIVSTLDQTLQILPGAWH PDRLLGFHIPGFGVLLTLAILLVVGAFASNFAGRKMVSWGDALVSRIPVVRSIYSSVK QVSDTLFSESGNAFRTAVLVQWPRDGVWTVAFVTGSPSGEVAAYLRDEFVSVYVPTTP NPTSGYFVLMRRSDCIELDMSIDAALKYIVSMGVVAPPDLVAHEPGK" misc_feature 965018..965632 /locus_tag="Alide2_0922" /note="Protein of unknown function (DUF502); Region: DUF502; cl01107" /db_xref="CDD:194037" gene 965742..967541 /locus_tag="Alide2_0923" /db_xref="GeneID:10481945" CDS 965742..967541 /locus_tag="Alide2_0923" /EC_number="6.1.1.12" /inference="protein motif:TFAM:TIGR00459" /note="TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: dia:Dtpsy_0803 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain" /codon_start=1 /transl_table=11 /product="aspartyl-tRNA synthetase" /protein_id="YP_004386850.1" /db_xref="GI:330823547" /db_xref="GO:0005524" /db_xref="GO:0016874" /db_xref="InterPro:IPR004115" /db_xref="InterPro:IPR004364" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR004524" /db_xref="GeneID:10481945" /translation="MAMRSHYCGLVTEALMGQTVSLCGWVNRRRDHGGVIFIDLRDRE GYVQVVCDPDRPEMFKVAEDIRNEFCVRVQGVVRARPAGTTNDKLKSGQIEVLCHELD VLNPSVTPPFQMDDDNLSETTRLTHRVMDLRRPAMQRNLMLRYKTAIQVRNFLDKEGF VDIETPMLGKSTPEGARDYLVPSRVHDGQFFALPQSPQLYKQMLMVAGYDRYYQITKC FRDEDLRADRQPEFTQIDCETSFLNEEEIRAIFQRMIVEVFKQQLDVDLGEFPTMAYA EAMHRFGSDKPDLRVKLEFTELTDVMRDVDFKVFSTPATTKGGRVVALRVPGGAAISR GEIDQYTEFVKIYGAKGLAWIKVNEAAKGRDGLQSPIVKNIHDAAIAEILKRTGAQDG DLVFFGADKEKIVNDSIGALRLKVGHSEFGRQNGLFENRWAPLWVVDFPMFEHDEDED RWVAVHHPFTSPKDGHEDLMDTDPGKCIAKAYDMVLNGWELGGGSVRIHRADVQSKVF SALKIGPEDARAKFGYLLDALQYGAPPHGGLAFGLDRLITLMTGAESIRDVIAFPKTQ RAQDLLTQAPSPVDEKQLRELHIRLRNPVPAVG" misc_feature 965742..967523 /locus_tag="Alide2_0923" /note="aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476" /db_xref="CDD:179042" misc_feature 965751..966152 /locus_tag="Alide2_0923" /note="EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317" /db_xref="CDD:58587" misc_feature order(965751..965753,965760..965762,965814..965816, 965868..965870,966054..966056,966060..966065) /locus_tag="Alide2_0923" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58587" misc_feature order(965823..965825,965829..965837,965850..965852, 965883..965885,965937..965939,965979..965981, 965997..965999,966024..966026,966072..966074) /locus_tag="Alide2_0923" /note="anticodon binding site; other site" /db_xref="CDD:58587" misc_feature 966162..>966590 /locus_tag="Alide2_0923" /note="Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the...; Region: AspRS_core; cd00777" /db_xref="CDD:73228" misc_feature order(966171..966179,966186..966188,966195..966200, 966207..966209,966216..966227,966231..966251, 966270..966272,966279..966293,966303..966314, 966357..966362,966369..966374,966390..966392, 966402..966404,966432..966434,966462..966464, 966477..966479) /locus_tag="Alide2_0923" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:73228" misc_feature 966237..966251 /locus_tag="Alide2_0923" /note="motif 1; other site" /db_xref="CDD:73228" misc_feature order(966261..966269,966327..966329,966333..966335, 966342..966344,966399..966401,966405..966407, 966420..966428,966435..966437,966441..966443) /locus_tag="Alide2_0923" /note="active site" /db_xref="CDD:73228" misc_feature 966396..966407 /locus_tag="Alide2_0923" /note="motif 2; other site" /db_xref="CDD:73228" misc_feature 966690..966965 /locus_tag="Alide2_0923" /note="GAD domain; Region: GAD; pfam02938" /db_xref="CDD:145868" misc_feature <967035..967442 /locus_tag="Alide2_0923" /note="Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the...; Region: AspRS_core; cd00777" /db_xref="CDD:73228" misc_feature 967365..967376 /locus_tag="Alide2_0923" /note="motif 3; other site" /db_xref="CDD:73228" gene 967603..968049 /locus_tag="Alide2_0924" /db_xref="GeneID:10481946" CDS 967603..968049 /locus_tag="Alide2_0924" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0805 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_004386851.1" /db_xref="GI:330823548" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="GeneID:10481946" /translation="MYKIPESVLVVIHTPDLQVLLIRRADAAEDFWQSVTGSKDSLAE DFAATAAREVREETGIDAAAPGCVLRDWGLENVYAIYPQWRHRYASGVYLNTERVFGL CVPPGTPVALNPREHTSYAWMGWREAADRCFSPSNAEAILWLPRFV" misc_feature 967615..968028 /locus_tag="Alide2_0924" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or...; Region: Nudix_Hydrolase; cl00447" /db_xref="CDD:189099" misc_feature order(967711..967719,967750..967776) /locus_tag="Alide2_0924" /note="nudix motif; other site" /db_xref="CDD:72880" gene 968052..968813 /locus_tag="Alide2_0925" /db_xref="GeneID:10481947" CDS 968052..968813 /locus_tag="Alide2_0925" /inference="protein motif:PFAM:PF03372" /note="PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dia:Dtpsy_0806 endonuclease/exonuclease/phosphatase" /codon_start=1 /transl_table=11 /product="endonuclease/exonuclease/phosphatase" /protein_id="YP_004386852.1" /db_xref="GI:330823549" /db_xref="InterPro:IPR005135" /db_xref="GeneID:10481947" /translation="MSPIELPAEHSGILRVATYNIHKGVQGLGPARRLEIHNLGLAVE QLDADIVCLQEVRKMNHKEAAYFKRWPRVPQAEYLAPEGYAAVYRTNAYTRHGEHGNA LLTRWPVVGHQHEDISDHRFEQRGLLHVEVEVQGRCVHAIVVHLGLIPGSRVRQVERL QRFIAREVPAGAPLVVAGDFNDWGLQIKHMLAGFGLYEYDDAPQAFTYPARLPLVQLD HVYVRGLTPLGLQVPRGRIWWRMSDHLPLIAEFRL" misc_feature 968097..968804 /locus_tag="Alide2_0925" /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490" /db_xref="CDD:197411" misc_feature order(968109..968111,968214..968216,968484..968486, 968586..968588,968592..968594,968703..968705, 968778..968783) /locus_tag="Alide2_0925" /note="putative catalytic site [active]" /db_xref="CDD:197306" misc_feature order(968214..968216,968778..968780) /locus_tag="Alide2_0925" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197306" misc_feature order(968484..968486,968592..968594,968781..968783) /locus_tag="Alide2_0925" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197306" gene 968956..970185 /locus_tag="Alide2_0926" /db_xref="GeneID:10481948" CDS 968956..970185 /locus_tag="Alide2_0926" /inference="similar to AA sequence:KEGG:Dtpsy_0807" /note="KEGG: dia:Dtpsy_0807 phospholipase D/transphosphatidylase" /codon_start=1 /transl_table=11 /product="phospholipase D/transphosphatidylase" /protein_id="YP_004386853.1" /db_xref="GI:330823550" /db_xref="GeneID:10481948" /translation="MATPARQTKTATDHHIQLLQGTQEFFPALIADMDAALSDIQFET YIFDCTGSGGLVAEALMRAAGRGVRVHLVVDGLGTGRLPEPWRSRMMAAGVRIQVYAP LGPLGLLLPTRWRRLHRKLCVIDGCVLFCGGINVLDDFHDPNHGELAAPRFDFAVRAV GSLVQQAGDTMEQLWWRMRAVRDVRHRRLSLALADLRAASAARVSARWAGAGGRGMRA ALLLRDNLRHRTRIERAYLRAIAQARREIIIANAYFVPGGKLRRALMLAARRGVRVRL LLQGRYEYFMQYHAARPVYGALLAAGVEIYEYEPSFLHAKVAVIDAQSRRAWATVGSS NLDPLSLLLAREANVVVRDASFAQELRQRLVRAMKNGGRPLDPHEYAARPWRARVLDR IAFATMRAALWVTGNRY" misc_feature 969022..969480 /locus_tag="Alide2_0926" /note="Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins; Region: PLDc_CLS_1; cd09110" /db_xref="CDD:197209" misc_feature order(969307..969309,969313..969315,969352..969354, 969358..969360,969415..969417) /locus_tag="Alide2_0926" /note="putative active site [active]" /db_xref="CDD:197209" misc_feature 969307..969309 /locus_tag="Alide2_0926" /note="catalytic site [active]" /db_xref="CDD:197209" misc_feature 969625..970140 /locus_tag="Alide2_0926" /note="Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239" /db_xref="CDD:197447" misc_feature order(969895..969897,969901..969903,969952..969954, 969958..969960,969991..969993) /locus_tag="Alide2_0926" /note="putative active site [active]" /db_xref="CDD:197200" misc_feature 969895..969897 /locus_tag="Alide2_0926" /note="catalytic site [active]" /db_xref="CDD:197200" gene 970290..971015 /locus_tag="Alide2_0927" /db_xref="GeneID:10481949" CDS 970290..971015 /locus_tag="Alide2_0927" /EC_number="3.5.4.16" /inference="protein motif:PRIAM:3.5.4.16" /note="KEGG: dia:Dtpsy_0808 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase I" /protein_id="YP_004386854.1" /db_xref="GI:330823551" /db_xref="InterPro:IPR020602" /db_xref="GeneID:10481949" /translation="MSSEPAAEPNAPPSDEGTPVSVKIRERLAAARRRFHANDNIAEF IEPGELELLLDEVEARMQGVLDSMVIDTAGDHNTQSTARRVAKMYLNEVFKGRYVHPP TITEFPNAEHLNELMIVGPITVRSACSHHFCPVIGKIWIGVLPNEHTNVIGLSKYARL VDWVMGRPQIQEEAVVQLADLIMEKTQPDGLAIVMEASHFCMSWRGVREMDSKMINSV MRGVFLTNSTLRREFLALIPGRN" misc_feature 970449..971000 /locus_tag="Alide2_0927" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" misc_feature order(970692..970694,970698..970700,970872..970874, 970941..970943) /locus_tag="Alide2_0927" /note="active site" /db_xref="CDD:29764" gene 971017..971439 /locus_tag="Alide2_0928" /db_xref="GeneID:10481950" CDS 971017..971439 /locus_tag="Alide2_0928" /inference="protein motif:PFAM:PF04940" /note="PFAM: BLUF; KEGG: dia:Dtpsy_0809 BLUF domain protein" /codon_start=1 /transl_table=11 /product="BLUF domain-containing protein" /protein_id="YP_004386855.1" /db_xref="GI:330823552" /db_xref="InterPro:IPR007024" /db_xref="GeneID:10481950" /translation="MLVRLLYVSRAVDTSPAAIEAILTQSRLHNPASGITGVLCYGGG IFLQAIEGGRTAVSELYGHIQRDERHKDVELLAFEEICERRFGGWTMGHVNLAKLNHS IVLKYSEKPEFDPYMTSGKVSFALLEELMATASIIGRA" misc_feature 971020..971295 /locus_tag="Alide2_0928" /note="Sensors of blue-light using FAD; Region: BLUF; pfam04940" /db_xref="CDD:147220" gene 971661..972542 /locus_tag="Alide2_0929" /db_xref="GeneID:10481951" CDS 971661..972542 /locus_tag="Alide2_0929" /inference="protein motif:PFAM:PF00892" /note="PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_0810 protein of unknown function DUF6 transmembrane" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386856.1" /db_xref="GI:330823553" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10481951" /translation="MSLNAFALIIVAGLIHAIWNIAAKKAGGDARFAFFTAVLMMLVW APLGWWLGRDAVPLWGAREWGIVALSGVLHVLYYVVLLRGYRKADLTVVYPLARGTGP LLSALVAVTLLGERLSALGAFGIAGVVGGVFLIAGGPGLLRAAHDPQARRRVRKGMLY GVLTGVFIAGYTVVDGYAVKAMLLSPILVDYMGNFVRVLVLAPVALRDRAELTRLWAA QWRFALLVAAVSPVAYVLVLFAMQTAPLSHVAPAREVSMLFAALIGGHLLGEGDRAAR LAGALLIAAGVAALGLG" misc_feature 971673..972452 /locus_tag="Alide2_0929" /note="phosphonate utilization associated putative membrane protein; Region: phn_DUF6; TIGR03340" /db_xref="CDD:163219" gene 972572..974392 /locus_tag="Alide2_0930" /db_xref="GeneID:10481952" CDS 972572..974392 /locus_tag="Alide2_0930" /inference="protein motif:PFAM:PF02518" /note="KEGG: dar:Daro_2490 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="YP_004386857.1" /db_xref="GI:330823554" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="GeneID:10481952" /translation="MKRGVFASRRVLGVLLLCAAAARAEVRLGALAVLEGEDTRRQWQ PLADGLQRALGVPVRLQALAPAALEQAVARGALDFVVTNPGHYVALEARHGATRIATR SAGAQGDPAHAVGSAVVVRADAPGPPATLAALRGWRVAAVAEEAFGGYQLAAVEWLRQ GVDAEAGGLRRVFTGYPMQRVAQAVLSGEADAGVLRTCLLELWERDGVVPAGALRVVP ADDDGGTGAPPGCRASTPLYPGWAFAALAGTPPELSRQVLLALLAQPGESGALDGVWT VPADYQRVHDALRLLQVEPYAFLRETRLQALLHRYWGVAAALLALALVGVAYLLRVEV LVKRRTAELTHSLHERERLARQNAQHQEALGHLSRLSILGELSAMLAHELNHPLATIA NYAAGLRRRAARGDLAPQDLERALRDIAHESERAARVIGGVRALARKRVPDRVAIDPR ALVGEALTLLGGWQPQAVRVACAPGAEALRVRGDAPQLLQVLLNLLQNARDVHRAAGC EGEPIGVEIAPEDGCLALAVRDHGPPLSPEALALLFTPFHTTKPDGLGLGLSISRGIA EAHGGALHARPVPPHEGGGMRMVLLLPLAQPEAADGDTPA" misc_feature 972680..973417 /locus_tag="Alide2_0930" /note="ABC transporter, phosphonate, periplasmic substrate-binding protein; Region: Phosphonate-bd; pfam12974" /db_xref="CDD:193447" misc_feature 972680..973357 /locus_tag="Alide2_0930" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature 973688..973885 /locus_tag="Alide2_0930" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(973697..973699,973709..973711,973721..973723, 973730..973732,973742..973744,973751..973753, 973814..973816,973826..973828,973835..973837, 973847..973849,973856..973858,973868..973870) /locus_tag="Alide2_0930" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 973715..973717 /locus_tag="Alide2_0930" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 974081..974347 /locus_tag="Alide2_0930" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(974081..974083,974153..974155,974159..974161, 974165..974167,974171..974176,974237..974248, 974294..974296,974300..974302,974324..974329, 974333..974335) /locus_tag="Alide2_0930" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature order(974165..974167,974171..974173,974237..974239, 974243..974245) /locus_tag="Alide2_0930" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 974389..975018 /locus_tag="Alide2_0931" /db_xref="GeneID:10481953" CDS 974389..975018 /locus_tag="Alide2_0931" /inference="protein motif:PFAM:PF00072" /note="KEGG: dar:Daro_2491 LuxR response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal" /codon_start=1 /transl_table=11 /product="two component LuxR family transcriptional regulator" /protein_id="YP_004386858.1" /db_xref="GI:330823555" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:10481953" /translation="MTALPPPCIHVVDDDENFLRSLLFMIEGLGFDAVGYPSAEAFAQ ADPAPAPQGGCLLLDIRMPRMSGLELQRRLQRPDLPIVFMTGHGDVDQAVQALRGGAL DFLQKPFREQALLDALNRAVAASAQAQRRQARQAQALQVLQRLSPRERDVARLLALGR SNKEVARELDISDHTVHVHRQSITRKTGSGHAADLARLILRAAPQELEE" misc_feature 974407..974958 /locus_tag="Alide2_0931" /note="Response regulator [Signal transduction mechanisms]; Region: TtrR; COG4566" /db_xref="CDD:34204" misc_feature 974419..974745 /locus_tag="Alide2_0931" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(974425..974430,974563..974565,974587..974589, 974641..974643,974698..974700,974707..974712) /locus_tag="Alide2_0931" /note="active site" /db_xref="CDD:29071" misc_feature 974563..974565 /locus_tag="Alide2_0931" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(974572..974577,974581..974589) /locus_tag="Alide2_0931" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 974707..974715 /locus_tag="Alide2_0931" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 974827..>974952 /locus_tag="Alide2_0931" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(974827..974832,974869..974877,974899..974904, 974908..974913,974917..974931) /locus_tag="Alide2_0931" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" gene complement(975127..976164) /locus_tag="Alide2_0932" /db_xref="GeneID:10481954" CDS complement(975127..976164) /locus_tag="Alide2_0932" /inference="protein motif:PFAM:PF00034" /note="PFAM: Cytochrome c, class I; KEGG: azo:azo2669 cytochrome c family protein" /codon_start=1 /transl_table=11 /product="cytochrome c class I" /protein_id="YP_004386859.1" /db_xref="GI:330823556" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10481954" /translation="MTHSTMTTSLRWLAAAAALAAGATLAADAPATVQLAGRAVPEID KLPPGHYKELVQYGHELTTRTFAHIGPEVGDVRRRLAGNNLACASCHQQAATKPFAMP WTGVAATFPQYRGREDEVSTVEERVNGCMERSMNGKPLPLDSREMKAFVTYIAFLSKG IPVGANVEGAGMVQSKMPNRRANLEAGAKVYEAKCAVCHGSDGQGVRAGQPGDAQGYV FPPLWGKDTFNNGAGMNRLAMATRFVKHNMPQGASFDAPQLTDDEAYDVSAFMLSKPR PEKANLEADFPARWNKPVDSAFPPYMLGAPADQHRYGPLPPLAEKQRQMAEQIKAQAA AERAKAQGAAR" sig_peptide complement(976084..976164) /locus_tag="Alide2_0932" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.981 at residue 27" misc_feature complement(975223..976044) /locus_tag="Alide2_0932" /note="Cytochrome c [Energy production and conversion]; Region: COG3258" /db_xref="CDD:33069" misc_feature complement(975346..975612) /locus_tag="Alide2_0932" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 976300..977157 /locus_tag="Alide2_0933" /db_xref="GeneID:10481955" CDS 976300..977157 /locus_tag="Alide2_0933" /inference="similar to AA sequence:KEGG:Aave_3628" /note="KEGG: aav:Aave_3628 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386860.1" /db_xref="GI:330823557" /db_xref="GeneID:10481955" /translation="MASHSPADPRAGAAIIVGCDFSSSPTPRKPIVLALGALEGPRVA LHGLRRFDTLAAFGQWLALPGDWVGGFDLPFGLPRALVAELGWPLAWPECMRHYRSLA RAQIREAFAAFCAARPAGAKFAHRATDGPAGSSPSMKWVNPPVAYMLHAGVPLLLDAG VHLPGLHDGDARRVALEAYPGLLARELIGRRSYKSDDPRRRTPERLAARADLLAGLER GATRLGLRLAAAPPLRDALLQDASGDGLDAALCLVQAGWALRRRRLGDARYGLPADMD PLEGWIVTA" gene complement(977309..977920) /locus_tag="Alide2_0934" /db_xref="GeneID:10481956" CDS complement(977309..977920) /locus_tag="Alide2_0934" /inference="similar to AA sequence:KEGG:Dtpsy_0813" /note="KEGG: dia:Dtpsy_0813 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386861.1" /db_xref="GI:330823558" /db_xref="GeneID:10481956" /translation="MDLLLVLALAAIGVFLLNARQQRRRIALLGQRLRPYQIERLMET LIQGYLRAMGETDAERRTQVLRMLEGNEAQLCEQFERLAADFRHVPAQQARVSLLPVG LPFALQLFPGASFDMREALAIHARGIARSARNDAALAPRDKAFTMTAELLLMQHSCHW FCKSRAVASARVLERHQTPYAQILASVSPETRAEYEKLLRRCE" sig_peptide complement(977861..977920) /locus_tag="Alide2_0934" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.771) with cleavage site probability 0.752 at residue 20" gene 978020..978676 /locus_tag="Alide2_0935" /db_xref="GeneID:10481957" CDS 978020..978676 /locus_tag="Alide2_0935" /inference="protein motif:PFAM:PF01810" /note="PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0885 lysine exporter protein LysE/YggA" /codon_start=1 /transl_table=11 /product="lysine exporter protein LysE/YggA" /protein_id="YP_004386862.1" /db_xref="GI:330823559" /db_xref="InterPro:IPR001123" /db_xref="GeneID:10481957" /translation="MPSIETLVAFFGVSALLALTPGPDNIFVLLQSAQRGWRAGMCVV LGLCLGLVGHTAAVALGLAAVFAASSLAFTVLKFCGAAYLAWLAWGALRAPAGAGDAP AQGAAAPGDGPAARGGALRMVGRGVVMNLTNPKVLVFFLAFLPQFADPARGAMARQVM VLGLVFMLATLLVFGAVACFSGAFGALLLRSARARLLLNRVAGLVFLGLALRLATAQR " misc_feature <978380..>978508 /locus_tag="Alide2_0935" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene complement(978737..980143) /locus_tag="Alide2_0936" /db_xref="GeneID:10481958" CDS complement(978737..980143) /locus_tag="Alide2_0936" /inference="protein motif:PFAM:PF01425" /note="PFAM: Amidase; KEGG: dia:Dtpsy_0815 amidase" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_004386863.1" /db_xref="GI:330823560" /db_xref="GO:0020037" /db_xref="InterPro:IPR000120" /db_xref="GeneID:10481958" /translation="MSAPHDLSASELLAAYRARSLSPVEATQSVLDHIARWEPHLHAT YLLRPEEALAQARASEARWLRGAPCGPLDGVPATVKDNIATRGDPTPLGTAATPLMPA PADAPPAARLREAGAVIVCKTTMPDYGMLSSGLSSFHALARNPWDLSRGPGGSSAGAG AAAAAGYGPLHVGTDIGGSIRLPAGWCGVFGLKPSLGRIPIDPPYTGRAAGPMTRTVQ DAALMMQVLSAPDARDSMSLPAQPIAWDDFGQGPGRLRGLRIGLLLDAGCGLPVDPQV RAAVEAAARLFEQAGAAIEPMPPFLTRHMLDGMDHFWRMRSFMDLRTLTPGQQGKVLP FIRDWAMSAAGLDGPQVFEASQQFHATRVATVHACAPFDYVLSPVAPMPAFAAELPAP TDDPLRPLEHIAFTVPFNMSEQPAASVNCGYTGGGLPIGLQIAGRRFDDLGVLQMAHA FEQLRGPQRPWPEPPDRH" misc_feature complement(978749..980143) /locus_tag="Alide2_0936" /note="amidase; Provisional; Region: PRK07042" /db_xref="CDD:180805" misc_feature complement(978809..980071) /locus_tag="Alide2_0936" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene complement(980140..981630) /locus_tag="Alide2_0937" /db_xref="GeneID:10481959" CDS complement(980140..981630) /locus_tag="Alide2_0937" /inference="protein motif:PFAM:PF00496" /note="PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5" /codon_start=1 /transl_table=11 /product="ABC transporter periplasmic subunit" /protein_id="YP_004386864.1" /db_xref="GI:330823561" /db_xref="GO:0005215" /db_xref="InterPro:IPR000914" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10481959" /translation="MLTRRTALASGALATAALATPLHALAQGKKDSVTLALVLEPPGL DPTAGAASSIAEVTLYNIYETLTKINPDGSVSPLLAESWEVSPDLRTYTFRLRKGVTF QNGEPFDAAAVKFSFDRAGGDKSTNKDKRTFANLSTQVVDAHTVVLINKDIDPDLLFL LGQATAIIVEPKSAATNASKPVGTGPYQLAAWSRGASIALTAWPGWRQAAQLKVRRAT FRFIPDPAAQVAALLAGDVDAFARVTPRSMAQFKGDPRFQVIVSGSRAKTILAINNAK KPLDDVRVRRAIAAAIDRKAVIQGAADGLGVPIGSHYVPGAFGYVDTTGINPYDPEKA RKLLAEAGVKTPLTLTMTLPPAPYARQGGEVIAAQLAKIGITAKLQNVEWAQWLSGTY GAKNYDLTLISHVEPFDLSNFAKPDYYWGYHSAQFDQLYDKIKNAARPADRARLLGDA QRLLAEDAVHAFLYQPQWVTVANKNLRGLWKDMPVFVNDLSVLSWS" sig_peptide complement(981556..981630) /locus_tag="Alide2_0937" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.550 at residue 25" misc_feature complement(980194..981537) /locus_tag="Alide2_0937" /note="The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_6; cd08494" /db_xref="CDD:173859" misc_feature complement(980374..981408) /locus_tag="Alide2_0937" /note="Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496" /db_xref="CDD:189574" gene complement(981736..982602) /locus_tag="Alide2_0938" /db_xref="GeneID:10481960" CDS complement(981736..982602) /locus_tag="Alide2_0938" /EC_number="3.6.3.24" /inference="protein motif:PRIAM:3.6.3.24" /note="PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: dia:Dtpsy_0817 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Nickel-transporting ATPase" /protein_id="YP_004386865.1" /db_xref="GI:330823562" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013563" /db_xref="GeneID:10481960" /translation="MNTIEKIAASTSSTGATGRFGDETPLLRVRDLRRHYPLPRTRLM GPRAQLAALQGVSFDVAAGRSLGVVGESGSGKSTLARLVMALDTPSAGTVELLGRDLH RLSAPELRAARRDFQMVFQDPYGSLDPRQTVERIVAEPLQALARATRAELRERAAEVL AQVGLRAGDAHKYPHEFSGGQRQRIAIARALITHPRLIVADEPVSALDVSVQAQVLNL LQDLQERLGVTFLLISHDLAVVQHLCDEVLVLHQGIVVERGAPQALFGAPRHPYTQAL VAAVPRLDALMT" misc_feature complement(981751..982533) /locus_tag="Alide2_0938" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124" /db_xref="CDD:31321" misc_feature complement(981826..982527) /locus_tag="Alide2_0938" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(982372..982395) /locus_tag="Alide2_0938" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(981898..981900,981997..982002, 982240..982242,982369..982377,982381..982386)) /locus_tag="Alide2_0938" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(982240..982251) /locus_tag="Alide2_0938" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(982045..982074) /locus_tag="Alide2_0938" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(981997..982014) /locus_tag="Alide2_0938" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(981979..981990) /locus_tag="Alide2_0938" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(981892..981912) /locus_tag="Alide2_0938" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature complement(<981748..981837) /locus_tag="Alide2_0938" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene complement(982599..983573) /locus_tag="Alide2_0939" /db_xref="GeneID:10481961" CDS complement(982599..983573) /locus_tag="Alide2_0939" /EC_number="3.6.3.24" /inference="protein motif:TFAM:TIGR01727" /note="SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0818 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal" /codon_start=1 /transl_table=11 /product="oligopeptide/dipeptide ABC transporter ATPase" /protein_id="YP_004386866.1" /db_xref="GI:330823563" /db_xref="GO:0005524" /db_xref="GO:0015197" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010066" /db_xref="InterPro:IPR013563" /db_xref="GeneID:10481961" /translation="MALLEVSGLRISLPTRRGRALAVRGLDFSLARGDTLGLIGESGC GKSLTALALMGLLPEGAQASGSIRFDGQELLGLDDRALCRLRGNRMAMVFQEPMTALN PVHSIGRQVAEPLRLHQGLTARQARAEAVALLERVGIAQAAQRLDAYPHQFSGGQRQR ITIAMALACGPDLLLADEPTTALDVTLQRQILELIRGLVAERGMALVLISHDLGVIAQ TVRRTLVMYGGTVVESGPTRAVFGAQAHPYTQGLFAARPQFGAARVPGARLPTIAGTV PELADLPPGCPFAGRCPRTIAACHAALPPAVALGADHEARCIRLGEAP" misc_feature complement(982623..983567) /locus_tag="Alide2_0939" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444" /db_xref="CDD:30793" misc_feature complement(982869..983567) /locus_tag="Alide2_0939" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(983433..983456) /locus_tag="Alide2_0939" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(982941..982943,983040..983045, 983289..983291,983430..983438,983442..983447)) /locus_tag="Alide2_0939" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(983289..983300) /locus_tag="Alide2_0939" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(983088..983117) /locus_tag="Alide2_0939" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(983040..983057) /locus_tag="Alide2_0939" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(983022..983033) /locus_tag="Alide2_0939" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(982935..982955) /locus_tag="Alide2_0939" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature complement(982692..982880) /locus_tag="Alide2_0939" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene complement(983847..984710) /locus_tag="Alide2_0940" /db_xref="GeneID:10481962" CDS complement(983847..984710) /locus_tag="Alide2_0940" /inference="protein motif:PFAM:PF00528" /note="PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0819 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386867.1" /db_xref="GI:330823564" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10481962" /translation="MSALPAPAPAPGFWRRALRHRSLMIGAALTALLLAAAALSLVWT PWPPYDMAMDAVLQPPGAQHWLGTDAYGRDVASLLLVGARSSILVGVIAVGIGLALGA ALGLLAAARGGWVEEAVMRLADFTFAFPALLLAIMLTAVFGPGIVNAIIAIGIFYVPT FARVTRASARAVWAREFILAARASGKGPWRITVEHVLPNIASVLIVQATIQFALAILA EAALSYLGLGTQPPQPSWGRMLAEAQTLMFQAPLLAVWPGVAIALAVLGLNLLGDGLR DLLDPRLARGR" sig_peptide complement(984588..984710) /locus_tag="Alide2_0940" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.824) with cleavage site probability 0.326 at residue 41" misc_feature complement(983946..984371) /locus_tag="Alide2_0940" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(983949..983954,983961..983966, 983994..983999,984039..984044,984051..984062, 984081..984083,984090..984095,984135..984137, 984186..984188,984195..984200,984210..984212, 984216..984221,984228..984230,984234..984236, 984240..984245,984294..984296,984300..984305, 984312..984341,984345..984356)) /locus_tag="Alide2_0940" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(984045..984062,984294..984338)) /locus_tag="Alide2_0940" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(983964..983966,983994..983996, 984003..984005,984042..984044,984258..984260, 984294..984296)) /locus_tag="Alide2_0940" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(984114..984116,984126..984131, 984147..984185)) /locus_tag="Alide2_0940" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(984707..985669) /locus_tag="Alide2_0941" /db_xref="GeneID:10481963" CDS complement(984707..985669) /locus_tag="Alide2_0941" /inference="protein motif:PFAM:PF00528" /note="PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0820 binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004386868.1" /db_xref="GI:330823565" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10481963" /translation="MASFILQRLVTLIATLLGASAVVFVVLEVLPGNAAQVLLGPDAA PEAVAALAAQLGLDQPALVRYGQWMAGLLTGRLGDSHAYSAPVLDLIAERLALTVPLA LLSMLLTCALALAAGVYAAARHGRLGDWGVMGLAQVGIAIPNFWFAILLILLFSVKLQ WFSAGGFPGWSVEGGGGILPALKALLLPALALAVVQAAILARITRSAVLDVLREDFVR TARAKGLTRRGALWGHVLRNAMIPVITVMGLQFANLLAGTIVVENVFYLPGLGRLIFQ SIANRDLVVVRNCVMLLAAMVVLVNFVVDLLYAAIDPRVKARGP" misc_feature complement(984713..985669) /locus_tag="Alide2_0941" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" sig_peptide complement(985592..985669) /locus_tag="Alide2_0941" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.621) with cleavage site probability 0.207 at residue 26" misc_feature complement(984812..985303) /locus_tag="Alide2_0941" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(984818..984823,984851..984856, 984881..984886,984893..984904,984923..984925, 984932..984937,984977..984979,985028..985030, 985037..985042,985052..985054,985058..985063, 985070..985072,985076..985078,985082..985087, 985214..985216,985220..985225,985232..985261, 985265..985276)) /locus_tag="Alide2_0941" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(984887..984904,985214..985258)) /locus_tag="Alide2_0941" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(984821..984823,984851..984853, 984860..984862,984884..984886,985154..985156, 985214..985216)) /locus_tag="Alide2_0941" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(984956..984958,984968..984973, 984989..985027)) /locus_tag="Alide2_0941" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 985814..986071 /locus_tag="Alide2_0942" /db_xref="GeneID:10481964" CDS 985814..986071 /locus_tag="Alide2_0942" /inference="similar to AA sequence:KEGG:Dtpsy_0821" /note="KEGG: dia:Dtpsy_0821 4Fe-4S ferredoxin iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /protein_id="YP_004386869.1" /db_xref="GI:330823566" /db_xref="GeneID:10481964" /translation="MALMITDECINCDVCEPECPNQAISMGEEHYEIEPSKCTECVGH FDEPQCVAICPVACIPVDPAHKEDRETLWQKFERLRAAQSA" misc_feature <985835..985984 /locus_tag="Alide2_0942" /note="hypothetical protein; Provisional; Region: PRK13795" /db_xref="CDD:184331" gene complement(986133..986762) /locus_tag="Alide2_0943" /db_xref="GeneID:10481965" CDS complement(986133..986762) /locus_tag="Alide2_0943" /EC_number="3.1.1.29" /inference="protein motif:HAMAP:MF_00083" /note="PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: dia:Dtpsy_0822 peptidyl-tRNA hydrolase" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="YP_004386870.1" /db_xref="GI:330823567" /db_xref="InterPro:IPR001328" /db_xref="GeneID:10481965" /translation="MIKLFVGLGNPGPEYEATRHNAGFWWIDALARELKVVLAPERSY HGLAARANVAGHGVWLLQPQTFMNLSGKSVAALARFFKIAPEEILVVHDELDLPPGQA KLKRGGSHAGHNGLRDIHAQLGTGDYWRLRLGIGHPGARAEVINWVLKKPAPDQRTLI EDSIAHSLKAYPAMLAGDMDKATQLVHTTKPPRPKPPRPATAAPQGGVG" misc_feature complement(986238..986753) /locus_tag="Alide2_0943" /note="Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462" /db_xref="CDD:73208" misc_feature complement(order(986424..986426,986484..986486, 986562..986567,986703..986705,986733..986735)) /locus_tag="Alide2_0943" /note="putative active site [active]" /db_xref="CDD:73208" misc_feature complement(986703..986705) /locus_tag="Alide2_0943" /note="catalytic residue [active]" /db_xref="CDD:73208" gene complement(986872..987498) /locus_tag="Alide2_0944" /db_xref="GeneID:10481966" CDS complement(986872..987498) /locus_tag="Alide2_0944" /inference="protein motif:TFAM:TIGR00731" /note="KEGG: dia:Dtpsy_0823 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: Ribosomal protein L25, long-form; PFAM: Ribosomal protein L25, short-form" /codon_start=1 /transl_table=11 /product="ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5" /protein_id="YP_004386871.1" /db_xref="GI:330823568" /db_xref="GO:0003735" /db_xref="GO:0008097" /db_xref="InterPro:IPR001021" /db_xref="InterPro:IPR020055" /db_xref="GeneID:10481966" /translation="MQFVAYERAKQGTGASRRLRISGKAPGIVYGGSAEPQMIEVDHN ALWHALKKEAFHSSILDMELNGQVTKVLLRDVQYHPFKQQVLHVDFQRVDDKTRVHLK VPLHYEGLEGSPAVKEEGCTVTPLIHEVDVMCMPSQLPEFITVDLSGLTSKSAPGVQS LKIPNGVKIVVRGSNKNPALVSIKLPEVVADASAAPAPAAAPAKKGKK" misc_feature complement(987223..987498) /locus_tag="Alide2_0944" /note="Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this...; Region: Ribosomal_L25_TL5_CTC; cd00495" /db_xref="CDD:88604" misc_feature complement(order(987226..987228,987232..987234, 987238..987240,987268..987270,987274..987279, 987391..987393,987403..987411,987439..987441, 987445..987453,987475..987477)) /locus_tag="Alide2_0944" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88604" misc_feature complement(order(987223..987228,987277..987279, 987289..987291,987325..987327,987403..987405)) /locus_tag="Alide2_0944" /note="CTC domain interface; other site" /db_xref="CDD:88604" misc_feature complement(order(987226..987228,987250..987255, 987259..987261,987271..987273,987280..987285)) /locus_tag="Alide2_0944" /note="L16 interface [polypeptide binding]; other site" /db_xref="CDD:88604" gene complement(987600..988559) /locus_tag="Alide2_0945" /db_xref="GeneID:10481967" CDS complement(987600..988559) /locus_tag="Alide2_0945" /EC_number="2.7.6.1" /inference="protein motif:TFAM:TIGR01251" /note="TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: dia:Dtpsy_0824 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="ribose-phosphate pyrophosphokinase" /protein_id="YP_004386872.1" /db_xref="GI:330823569" /db_xref="GO:0000287" /db_xref="GO:0004749" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR005946" /db_xref="GeneID:10481967" /translation="MQTNTPDFLVFTGNANPGLATEIVRNLGTTLGAVDAGRFSDGEV TVEIKQNVRARDVFVVQSTCAPTNENLMELLIMVDALKRASAERISAVIPYFGYARQD RRPRSTRVPISAKVVANMLQAVGVARVLTMDLHADQIQGFFDIPVDNIYASPVLLGDL NEKKYENLIVVSPDVGGVVRARALAKQLGTDLAIIDKRRPKANVSEVMHVIGDIDGRN CVIMDDMIDTAGTLVKAAEVLKERGAKKVYAYCTHPIFSGPAIERIANGTALDEVVVT NTIPLSDAAKGCAKIRQLSVAPLIAETIQRISKGESVSSMFSD" misc_feature complement(987603..988544) /locus_tag="Alide2_0945" /note="ribose-phosphate pyrophosphokinase; Provisional; Region: PRK04923" /db_xref="CDD:179893" misc_feature complement(987609..988538) /locus_tag="Alide2_0945" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene complement(988675..988751) /locus_tag="Alide2_R0009" /note="tRNA-Gln1" /db_xref="GeneID:10481968" tRNA complement(988675..988751) /locus_tag="Alide2_R0009" /product="tRNA-Gln" /db_xref="GeneID:10481968" gene complement(988779..989645) /locus_tag="Alide2_0946" /db_xref="GeneID:10481969" CDS complement(988779..989645) /locus_tag="Alide2_0946" /EC_number="2.7.1.148" /inference="protein motif:HAMAP:MF_00061" /note="PFAM: GHMP kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: ajs:Ajs_0896 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase" /protein_id="YP_004386873.1" /db_xref="GI:330823570" /db_xref="InterPro:IPR004424" /db_xref="InterPro:IPR006204" /db_xref="GeneID:10481969" /translation="MRALYDVPAPAKLNLFLHVTGRRPDGYHLLQSVFMLIDWCDTLH FELRADGAISREDLTQPLPADDLVVRAARALQAATGCGLGAHIGVHKRVPAQAGMGGG SSDAASTLLALNRLWGLGLPRARLHAIGLGLGADVPFFLCGRNAWVEGIGDIIRPLDL EHQLPDASFAVVKPAAGLDTKAIFSHPSLKRDSSCATIQGFAAMPYQFGSNDLQPVAQ ALCPEIDQAIDWLASKGLRGRMTGSGSAVFAQATHAIDLHDAPAAWQVKMCENLGLHP LSDWALDERIKG" misc_feature complement(988830..989645) /locus_tag="Alide2_0946" /note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: ipk; PRK00343" /db_xref="CDD:178981" gene complement(989650..990147) /locus_tag="Alide2_0947" /db_xref="GeneID:10481970" CDS complement(989650..990147) /locus_tag="Alide2_0947" /inference="protein motif:PFAM:PF03550" /note="PFAM: Outer membrane lipoprotein LolB; KEGG: dia:Dtpsy_0826 putative lipoprotein" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein LolB" /protein_id="YP_004386874.1" /db_xref="GI:330823571" /db_xref="InterPro:IPR004565" /db_xref="GeneID:10481970" /translation="MTAPRPARGRLLLAGLALALLGACAQPPRPAGAAADHWSGRLAV QVEDASAQSFSAGFELQGSPQAGELTLFNPLGNVMAQLQWRPGHALLRNGGEQRQSTS LQALVLELTGSDLPIAALFGWLKGEAVQASGWQADLSALAQGRLTATRHTPAPQTTLR VALSL" sig_peptide complement(990046..990147) /locus_tag="Alide2_0947" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.495 at residue 34" misc_feature complement(<989704..990030) /locus_tag="Alide2_0947" /note="Outer membrane lipoprotein LolB; Region: LolB; pfam03550" /db_xref="CDD:112372" gene complement(990144..991925) /locus_tag="Alide2_0948" /db_xref="GeneID:10481971" CDS complement(990144..991925) /locus_tag="Alide2_0948" /inference="protein motif:PFAM:PF00515" /note="PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0898 TPR repeat-containing protein" /codon_start=1 /transl_table=11 /product="tetratricopeptide TPR_1 repeat-containing protein" /protein_id="YP_004386875.1" /db_xref="GI:330823572" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR011717" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10481971" /translation="MDYYGLMVHSLRRIRPAALACVAAACIFPALAQTGERASEPASA PVQEEETAALNAELFYELLLSEITTSEGDPATGYNLMLDAARRSGDPQLYRRATEIAL QSRSGGYALAAARAWKEALPQSRDANRYLLRILVALNRIGDSAEPLRQELASSSARDK VSTIRALPLLYARAGDKALAARVVRLALEEELNNPATGPMAWTTVGRMYLAADDKARA LEAAGNALAQNPGDDGAAMLSLQLLENAVPEAEALLSRYLAGKPLPEVRMAYARVLLE SQRLADAQAQVDAVTREQPDNAQAWLIRASLQLQAGELDQAEAALQRCTQLLEQDPAT EQRQRALTQIYLMQSQIAEKRGDLAQAQAWLARIDDAEQLLAVQSRHASLLVRQGRLD EARALIRAIPEKGPDDVRLKLQAEVQLLREAGHYQQAYELQGKVVALAPQDNELVYDQ AMLADKAGRTAEMERLLRTIIARQPDHHHALNALGFSLADRGVRLQEAKALIVKALEY APDDPFITDSLGWVEFRLGNRKEALDILERAFKTRPDAEIAAHIGEVLWSLGQRDRAL AVWREGLRINKDNDVLKGTLKRLRVRP" sig_peptide complement(991827..991925) /locus_tag="Alide2_0948" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.964) with cleavage site probability 0.956 at residue 33" misc_feature complement(990231..>991220) /locus_tag="Alide2_0948" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" misc_feature complement(990393..990674) /locus_tag="Alide2_0948" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(990453..990458,990465..990470, 990477..990482,990558..990563,990570..990575, 990579..990584,990669..990674)) /locus_tag="Alide2_0948" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(990411..990413,990420..990422, 990432..990434,990471..990473,990516..990518, 990525..990527,990537..990539,990573..990575, 990618..990620,990627..990629,990639..990641)) /locus_tag="Alide2_0948" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(990192..990488) /locus_tag="Alide2_0948" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(990249..990254,990261..990266, 990273..990278,990351..990356,990363..990368, 990372..990377,990465..990470,990477..990482, 990486..990488)) /locus_tag="Alide2_0948" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(990210..990212,990219..990221, 990231..990233,990267..990269,990309..990311, 990318..990320,990330..990332,990366..990368, 990411..990413,990420..990422,990432..990434, 990471..990473)) /locus_tag="Alide2_0948" /note="TPR motif; other site" /db_xref="CDD:29151" gene 991955..992770 /locus_tag="Alide2_0949" /db_xref="GeneID:10481972" CDS 991955..992770 /locus_tag="Alide2_0949" /EC_number="3.2.2.23" /inference="protein motif:TFAM:TIGR00577" /note="SMART: DNA glycosylase/AP lyase, catalytic domain; TIGRFAM: DNA glycosylase/AP lyase; KEGG: ajs:Ajs_0899 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase" /codon_start=1 /transl_table=11 /product="formamidopyrimidine-DNA glycosylase" /protein_id="YP_004386876.1" /db_xref="GI:330823573" /db_xref="GO:0003906" /db_xref="GO:0008270" /db_xref="GO:0008534" /db_xref="InterPro:IPR000191" /db_xref="InterPro:IPR010663" /db_xref="InterPro:IPR012319" /db_xref="InterPro:IPR015886" /db_xref="GeneID:10481972" /translation="MPELPEVEVTRRGLADAIGGATIRAVALGKSLRWPLGLAPGELA GQRVLAVRRRGKYLLLDLQQGLLLIHLGMSGSLRFAHGLPQRGPHDHFDMETDRGTLR LHDPRRFGAVVWAAGEDDPQARKLLGTLGVEPLGEDFDFQAFHAALRASRMPIKQLLL AGRVVVGVGNIYACEVLFLARIRPTMRASAIGSQRARRLHGAIREVLARAVERGGSTL RDFSGVDGNAGHFQAEANVYGREGLPCRQCGTPVRLLRQGQRSTYFCPNCQRS" misc_feature 991955..992764 /locus_tag="Alide2_0949" /note="formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated; Region: PRK01103" /db_xref="CDD:179222" misc_feature 991958..992296 /locus_tag="Alide2_0949" /note="N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases; Region: EcFpg-like_N; cd08966" /db_xref="CDD:176800" misc_feature order(991958..991963,992120..992122,992162..992164, 992168..992176,992216..992221,992270..992281) /locus_tag="Alide2_0949" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176800" misc_feature 991958..991960 /locus_tag="Alide2_0949" /note="catalytic residue [active]" /db_xref="CDD:176800" misc_feature order(991961..991972,991976..991981,991988..991990, 992111..992122,992174..992176) /locus_tag="Alide2_0949" /note="H2TH interface [polypeptide binding]; other site" /db_xref="CDD:176800" misc_feature order(991961..991963,992120..992122) /locus_tag="Alide2_0949" /note="putative catalytic residues [active]" /db_xref="CDD:176800" misc_feature 992162..992164 /locus_tag="Alide2_0949" /note="turnover-facilitating residue; other site" /db_xref="CDD:176800" misc_feature order(992171..992173,992273..992275,992279..992281) /locus_tag="Alide2_0949" /note="intercalation triad [nucleotide binding]; other site" /db_xref="CDD:176800" misc_feature 992174..992176 /locus_tag="Alide2_0949" /note="8OG recognition residue [nucleotide binding]; other site" /db_xref="CDD:176800" misc_feature order(992219..992221,992276..992278) /locus_tag="Alide2_0949" /note="putative reading head residues; other site" /db_xref="CDD:176800" misc_feature 992342..992620 /locus_tag="Alide2_0949" /note="Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831" /db_xref="CDD:115485" misc_feature 992678..992761 /locus_tag="Alide2_0949" /note="Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827" /db_xref="CDD:148438" gene 992840..994825 /locus_tag="Alide2_0950" /db_xref="GeneID:10481973" CDS 992840..994825 /locus_tag="Alide2_0950" /inference="similar to AA sequence:KEGG:Dtpsy_0829" /note="manually curated; KEGG: dia:Dtpsy_0829 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386877.1" /db_xref="GI:330823574" /db_xref="GeneID:10481973" /translation="MGSSFNERFDQHGAWRRAFAQQLKRLGQWMGAHDLMDAAVGERL QRLEEQVRSDKVTVAFVGEFSRGKSELINAIFFAGYGRRIMPATAGRTTMCPTELGYE GGTAPSLRLLPIETRMQPLGLAEWRLKPDLWVNVALDMDDPAQMAQALEKVSEVRRVS VDEARALGFWSDEAGDENPRRDAGGMVSVPMWRHAVINFPHPLLRQGLVILDTPGLNA VGVEPELTINLIAQAHAVVFLLGADTGVTRSDLAIWRDHLGGAEDAFDARLVVLNKID TLWDQLNSPAQVQAQLERQRHTVTEVLGVPLGQVVAVSAQKGLVAKINCDDDLLEASG LPQLEVALGTGIMGRRQSILRAAVAGGVTGLRNEARRVINIRRRDLDDQMLELRSLRG KNASVIDAMRGRIEQEQQEFEACTARIQAVRAVHLKMLRELFHQLGPRALKAQLAPLT EALESSGLKLGVRKAYGETFASVRAAMEAAQATGGEIQAMLGGTFRQLNTEFGFSLQV PVAAQLGAYVREIAAIEQRHLQYVGMGNVLRLARPEFTQRLLRALGLRLRTVFEAAAN ELEMWSKTATAQLDAQLRERKRSFERRIEAVNRIRQAASGLVERIAEIEAAEENLAEL ELRLSELTDELVQQPGVEEDLPVPDIPETAPQPLTPA" misc_feature 993011..993664 /locus_tag="Alide2_0950" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature <993458..993784 /locus_tag="Alide2_0950" /note="Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs)...; Region: Era_like; cd00880" /db_xref="CDD:133256" misc_feature order(993470..993487,993533..993535) /locus_tag="Alide2_0950" /note="Switch II region; other site" /db_xref="CDD:133256" misc_feature 993473..993484 /locus_tag="Alide2_0950" /note="G3 box; other site" /db_xref="CDD:133256" misc_feature 993656..993667 /locus_tag="Alide2_0950" /note="G4 box; other site" /db_xref="CDD:133256" misc_feature 993779..993784 /locus_tag="Alide2_0950" /note="G5 box; other site" /db_xref="CDD:133256" gene 994822..995880 /locus_tag="Alide2_0951" /db_xref="GeneID:10481974" CDS 994822..995880 /locus_tag="Alide2_0951" /inference="protein motif:TFAM:TIGR01084" /note="TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: dia:Dtpsy_0830 A/G-specific adenine glycosylase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif" /codon_start=1 /transl_table=11 /product="A/G-specific adenine glycosylase" /protein_id="YP_004386878.1" /db_xref="GI:330823575" /db_xref="GO:0019104" /db_xref="InterPro:IPR003265" /db_xref="InterPro:IPR003651" /db_xref="InterPro:IPR005760" /db_xref="GeneID:10481974" /translation="MTQPPVEIAAQVVRWQAGHGRNHLPWQNTRDAYRVWLSEIMLQQ TQVATVLEYYARFLARFPDVVQLAAAPQDEVLALWSGLGYYSRARNLHRCAQIVVQQH GGRFPRTVPELAALPGIGRSTAGAIAAFCFGERAAILDANVRRVLTRVLGFRADLAEA KNERELWRLAEALLPKGDLHAAMPRYTQGLMDLGAGICLPRNPSCMLCPLQNVCVARR DGNPQDYPVRTRKLKRSAQAWWLLLRQDGAGRLWLERRPSAGIWAGLYCPPVYASRAE LDTALPPPAAGAAEDLPPFIHVLTHRDLHLHPVLARGVGAVADPHCAEAQQAGWFTPA QCLELGLPAPVRRLIDAL" misc_feature 994846..995652 /locus_tag="Alide2_0951" /note="A/G-specific adenine glycosylase; Region: mutY; TIGR01084" /db_xref="CDD:130156" misc_feature 994918..>995277 /locus_tag="Alide2_0951" /note="endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056" /db_xref="CDD:28938" misc_feature order(994951..994959,994966..994968,995080..995082) /locus_tag="Alide2_0951" /note="minor groove reading motif; other site" /db_xref="CDD:28938" misc_feature 995167..995190 /locus_tag="Alide2_0951" /note="helix-hairpin-helix signature motif; other site" /db_xref="CDD:28938" misc_feature 995239..995241 /locus_tag="Alide2_0951" /note="active site" /db_xref="CDD:28938" misc_feature 995518..995877 /locus_tag="Alide2_0951" /note="DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important...; Region: DNA_Glycosylase_C; cd03431" /db_xref="CDD:72889" misc_feature order(995599..995607,995710..995712,995719..995724) /locus_tag="Alide2_0951" /note="DNA binding and oxoG recognition site [nucleotide binding]" /db_xref="CDD:72889" gene complement(995994..996857) /locus_tag="Alide2_0952" /db_xref="GeneID:10481975" CDS complement(995994..996857) /locus_tag="Alide2_0952" /inference="protein motif:HAMAP:MF_00636" /note="HAMAP: ATPase, P-loop-containing; KEGG: dia:Dtpsy_0831 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386879.1" /db_xref="GI:330823576" /db_xref="InterPro:IPR005337" /db_xref="GeneID:10481975" /translation="MSLEVVVITGMSGSGKSVALHALEDAGYYCVDNLPPELLASFVA LEHAHHGHRVAVAMDVRSATALPLVPQQLDRLREQGVQVRSLFLDATTGTLVRRFSET RRRHPLSQDELIEGRRALVQTIELERELLAELRAQSHVIDTSTLRPSQLLSYVKDLLA VPPSQLTLVFQSFAFKRGLPFDSDYVFDVRMLPNPHYEPALRPLTGKDAPVAEYLRQQ PEVALMLSHITQFLEHWLDALAQNHRSYVTVAVGCTGGQHRSVYLVEQLAERFTGRWN TLRRHRELDGI" misc_feature complement(996003..996857) /locus_tag="Alide2_0952" /note="P-loop ATPase protein family; Region: ATP_bind_2; cl10035" /db_xref="CDD:186894" gene complement(996863..998536) /locus_tag="Alide2_0953" /db_xref="GeneID:10481976" CDS complement(996863..998536) /locus_tag="Alide2_0953" /inference="protein motif:TFAM:TIGR00634" /note="KEGG: ajs:Ajs_0903 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC" /codon_start=1 /transl_table=11 /product="DNA repair protein RecN" /protein_id="YP_004386880.1" /db_xref="GI:330823577" /db_xref="GO:0005524" /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR004604" /db_xref="GeneID:10481976" /translation="MALRRIALRDFVIVQALDLDLHAGFTVLTGETGAGKSILIDALQ LLLGARADTGVIREGAQRADICAEFDAGTAALGAWLEEAGIAHDGALLLRRTVDLQGK SRAWINGIPATAAQMRALGEHLLDIHGQHAWQSLTRPDAVRGLLDAYAGAQAEPLAAL WTAWRDAQKALAHAREAQDTLQQERERLQWQIGEVDRLAPREGEWDELNAEHARLSNA QALLDNAQGALSALQDDEAGGALAALAQAQHLLQAYEHIHEDFRAMNEVLASCIAQAD DVAHSLQGYLRHAEPDPDALERLDARLSQWMQLARRYKRTPSELPALLDGWKESLRRL DDAADLAALEAAEQAQAAAYHKAARALSQKRARAAPKLAQAITQAMQGLGMTGGRFEV QVDKATEPGPHGVDQVAFLVSSHPGMTPRPVGKVASGGELSRIALAISVATSALGEAP TLIFDEVDSGVGGAVAETVGRLMQQLGRERQVLAVTHLPQVAACANHHLIVSKHRHAE GTTSAVATAGADERVAEVARMLGGQQQSPTTLAHAREMLDGARAATAAG" misc_feature complement(996881..998530) /locus_tag="Alide2_0953" /note="ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: RecN; COG0497" /db_xref="CDD:30843" misc_feature complement(<998093..998530) /locus_tag="Alide2_0953" /note="RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides...; Region: ABC_RecN; cd03241" /db_xref="CDD:73000" misc_feature complement(998426..998449) /locus_tag="Alide2_0953" /note="Walker A/P-loop; other site" /db_xref="CDD:73000" misc_feature complement(order(998120..998122,998423..998431, 998435..998440)) /locus_tag="Alide2_0953" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73000" misc_feature complement(998120..998131) /locus_tag="Alide2_0953" /note="Q-loop/lid; other site" /db_xref="CDD:73000" misc_feature complement(996941..>997327) /locus_tag="Alide2_0953" /note="RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides...; Region: ABC_RecN; cd03241" /db_xref="CDD:73000" misc_feature complement(997229..997258) /locus_tag="Alide2_0953" /note="ABC transporter signature motif; other site" /db_xref="CDD:73000" misc_feature complement(997169..997186) /locus_tag="Alide2_0953" /note="Walker B; other site" /db_xref="CDD:73000" misc_feature complement(997151..997162) /locus_tag="Alide2_0953" /note="D-loop; other site" /db_xref="CDD:73000" misc_feature complement(997070..997090) /locus_tag="Alide2_0953" /note="H-loop/switch region; other site" /db_xref="CDD:73000" gene complement(998539..999435) /locus_tag="Alide2_0954" /db_xref="GeneID:10481977" CDS complement(998539..999435) /locus_tag="Alide2_0954" /EC_number="2.7.1.23" /inference="protein motif:HAMAP:MF_00361" /note="HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: dia:Dtpsy_0833 NAD(+)/NADH kinase family protein; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted" /codon_start=1 /transl_table=11 /product="inorganic polyphosphate/ATP-NAD kinase" /protein_id="YP_004386881.1" /db_xref="GI:330823578" /db_xref="InterPro:IPR002504" /db_xref="GeneID:10481977" /translation="MKPIFRRVAVIGKYQVPVAGSASGNSRQIIESIARFIAQQECEP TLETETAASTGLTGYHTLDVDGIGQHCDLCVVVGGDGTMLGVGRKLAAYGTPLVGINQ GRLGFITDIPLQGYQDVLTPILHGDYEEDVRPLMQARVERGGESVFEALALNDVVVNR GSTSGMVELRVEVDGVFVSNQRADGLIVASPTGSTAYALSAGGPMLHPSIPGWVLVPI APHTLSNRPIVLSDATEIAIEVAGGRDISANFDMQSLASLQHGDRVLVRRSAHRVCFL HPRGWSFFATLRRKLRWNEGGS" misc_feature complement(998542..999435) /locus_tag="Alide2_0954" /note="Diacylglycerol kinase catalytic domain; Region: DAGK_cat; cl01255" /db_xref="CDD:194084" misc_feature complement(998557..999300) /locus_tag="Alide2_0954" /note="inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK02231" /db_xref="CDD:167337" gene 999464..1000468 /locus_tag="Alide2_0955" /db_xref="GeneID:10481978" CDS 999464..1000468 /locus_tag="Alide2_0955" /inference="protein motif:HAMAP:MF_00081" /note="TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; KEGG: dia:Dtpsy_0847 heat-inducible transcription repressor; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal" /codon_start=1 /transl_table=11 /product="heat-inducible transcription repressor HrcA" /protein_id="YP_004386882.1" /db_xref="GI:330823579" /db_xref="InterPro:IPR002571" /db_xref="InterPro:IPR021153" /db_xref="GeneID:10481978" /translation="MLDDRSKLLLKALVERYIADGQPVGSRTLSRASGLELSPATIRN VMADLEDLGLIASPHTSAGRVPTAKGYRLFVDTMLTVQQEQLPALQIKPEQPQKVIAN AAHLLSSLSQFVGVVMAPRRTSVFRHIEFLRLSERRLLVIIVSPDGDVQNRVLFTESD YTQSQLVEAANFLNAHYAGLAMEQVRERLRLEVDKLRGEIAALMQAAVNAGSQALSES QEEVVFSGERNLLAVSDFSGDMGHLRRAFDLFEQKTQILRLLDISSRAEGVRIFIGGE SQVVPFEELSVVSAPYEVDGQVVGTLGVIGPTRMPYDRMIQIVDITSKLVSNALSHHK " misc_feature 999464..1000456 /locus_tag="Alide2_0955" /note="heat-inducible transcription repressor; Provisional; Region: hrcA; PRK00082" /db_xref="CDD:178849" misc_feature 999464..999679 /locus_tag="Alide2_0955" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 999755..1000411 /locus_tag="Alide2_0955" /note="HrcA protein C terminal domain; Region: HrcA; pfam01628" /db_xref="CDD:145001" gene 1000521..1000597 /locus_tag="Alide2_R0010" /note="tRNA-Met1" /db_xref="GeneID:10481979" tRNA 1000521..1000597 /locus_tag="Alide2_R0010" /product="tRNA-Met" /db_xref="GeneID:10481979" gene 1000770..1000901 /locus_tag="Alide2_0956" /pseudo /db_xref="GeneID:10481980" gene 1000898..1001368 /locus_tag="Alide2_0957" /db_xref="GeneID:10481981" CDS 1000898..1001368 /locus_tag="Alide2_0957" /inference="protein motif:PFAM:PF04313" /note="PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; KEGG: gur:Gura_3600 N-6 DNA methylase" /codon_start=1 /transl_table=11 /product="Restriction endonuclease, type I, EcoRI, R subunit/type III" /protein_id="YP_004386883.1" /db_xref="GI:330823580" /db_xref="GO:0003677" /db_xref="GO:0004519" /db_xref="InterPro:IPR007409" /db_xref="GeneID:10481981" /translation="MTITLEALLKDSAYKLGQFKPAHINALQAAISLKDTAKKLTPYV TCLVRGKPVKLTPEEAVRQLYVMVLRDDLGYPVKRMQLEYEVTFGREKKRADICIFDK DKTDTPYILIEVKKPKLKDGKEQLKSYCHATGAPMGVWTNGDLNRPGFQGGRLV" misc_feature 1001069..1001338 /locus_tag="Alide2_0957" /note="Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N; pfam04313" /db_xref="CDD:190940" gene complement(1001365..1002279) /locus_tag="Alide2_0958" /db_xref="GeneID:10481982" CDS complement(1001365..1002279) /locus_tag="Alide2_0958" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004386884.1" /db_xref="GI:330823581" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10481982" /translation="MKNYIDRHRDDYGVEPICRVLQMAPSCYWRHAARQRNPQLRSQR VQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIAVARCTVERLMRAMGLQGARRG KTVRTTTPDTSAPCPLDHVNRQFKASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAVSDTSTEVST" misc_feature complement(1001383..1002219) /locus_tag="Alide2_0958" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(1001548..1001904) /locus_tag="Alide2_0958" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1002276..1002599) /locus_tag="Alide2_0959" /db_xref="GeneID:10481983" CDS complement(1002276..1002599) /locus_tag="Alide2_0959" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004386885.1" /db_xref="GI:330823582" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10481983" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADAQRIKELEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature complement(1002390..1002599) /locus_tag="Alide2_0959" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene complement(1002847..1004109) /locus_tag="Alide2_0960" /db_xref="GeneID:10481984" CDS complement(1002847..1004109) /locus_tag="Alide2_0960" /inference="similar to AA sequence:KEGG:Daci_2707" /note="KEGG: dac:Daci_2707 outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="outer membrane efflux protein" /protein_id="YP_004386886.1" /db_xref="GI:330823583" /db_xref="GeneID:10481984" /translation="MKFLFPCAAAALACIPWFTLAQEPAPGWLPSSAQVHAALQSQPA VRAAAERVRAAAATQHALDVGSHEFQANSGFQRRYVPNEQRSYNEWELGISRTIRLPD KARLDREIGSSTRSVADLRLEDAEHQVARRLLDAWMGWLRSSAVAEETAAQDQLLSRE RDVLVRRVALGDAARREMDVLDAELATQAAQTLMARDAALAARQALALGFPEITVPLA AAALPEPQELPDSPQAWQARIVQESAEIAMANGETTRLLKVAERTRAERTPDPTVGVR VLSDRGGTERVVGLVLSVPFGMDYRSARAATESANAAAAEAEAADVRRAIEQGAWLAV QAAQSKCAQWQSHQQALAAQTASNTRTRRAWELGEASLGEYLLSLRSLRQARLAETQA RVDALQAAMLVRIDAHAMWHRSRSTVAN" sig_peptide complement(1004044..1004109) /locus_tag="Alide2_0960" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.986 at residue 22" gene complement(1004106..1004447) /locus_tag="Alide2_0961" /db_xref="GeneID:10481985" CDS complement(1004106..1004447) /locus_tag="Alide2_0961" /inference="protein motif:PFAM:PF11582" /note="PFAM: Protein of unknown function DUF3240; KEGG: dac:Daci_2708 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386887.1" /db_xref="GI:330823584" /db_xref="InterPro:IPR021634" /db_xref="GeneID:10481985" /translation="MNTEMNAPHDEQGAEWIRLNLVFPPALEDAVTGTLMTDITLPGF TLLHAEGHSSDFTHASIREQVRGRIDRRVLWVVIERERVDSLLAALRQRIASNDVRWW MEPVMAMGRLV" misc_feature complement(1004109..1004396) /locus_tag="Alide2_0961" /note="Protein of unknown function (DUF3240); Region: DUF3240; pfam11582" /db_xref="CDD:192778" gene complement(1004444..1009008) /locus_tag="Alide2_0962" /pseudo /db_xref="GeneID:10481986" gene complement(1006794..1007999) /locus_tag="Alide2_0963" /db_xref="GeneID:10481987" CDS complement(1006794..1007999) /locus_tag="Alide2_0963" /inference="protein motif:PFAM:PF01609" /note="PFAM: Transposase, IS4-like; KEGG: bvi:Bcep1808_6138 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_004386888.1" /db_xref="GI:330823585" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002559" /db_xref="GeneID:10481987" /translation="MARTRKAVAAHIDVAHLISAGVLASVCPRPLIEEVLAQTGRASQ RQRLLPAPAVVYYVMALALWREAPLEEVLRVVCEGLHWLGGPQGQGQTIQASKSAISQ ARTRLGPEVMQQLAQRVLRPVASRDLTGAWYRDWRVMAIDGSTMDVADERTNAEFFGY PSSSRGQSAFPQARLVGLVECGTHVVTAAQMGPYAQGEQTMAEPLLASHLQPDMLVLA DRGFYSFKLWQIACASGAKLAWRVKSTMRLPVQQRLQDGSYLSTLFSSEDRQRRNGQV VRVIDYTLQDSATPAQDSYRLVTNILDPDQAPAQELAALYHERWEIESVLDEFKTHLR GSSTVLRSKTPELVQQELWGLLLAHFAIRQLMAQAAWNNGLDPDRLSFVHAVRVIKRK MPQAAAIPP" misc_feature complement(1007646..1007957) /locus_tag="Alide2_0963" /note="Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006" /db_xref="CDD:193479" misc_feature complement(1006926..1007591) /locus_tag="Alide2_0963" /note="Transposase DDE domain; Region: DDE_Tnp_1; pfam01609" /db_xref="CDD:144990" gene complement(1009019..1010242) /locus_tag="Alide2_0964" /db_xref="GeneID:10481988" CDS complement(1009019..1010242) /locus_tag="Alide2_0964" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: dac:Daci_2710 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_004386889.1" /db_xref="GI:330823586" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10481988" /translation="MLGMSPSATPPEGAPQKKNQHSALSRVAAAVVIVAVAAGAGWWV LSRPAKESVAQAPAMIPAADGHITLGVAQLRALGVATAAADTATQLPVPGLPAQAAAP LAASAQVSAPYAGVVTRILVDEGAFVRQGQPLARIQSRDVLVAQGELSRARSEATAAA LQAQRDTVLLAEGIIPAARNEQSQARTQAAQSTLRQATGALAQLRPVAGGQAGEYELL APMAGQVVRRHLMPGQSVAALEAAFVVAEAGHMDVNFTAPLRLRSAIKPGLPVGLPDG SVAKVVAVGADADPASQSLRVRASIEGQTALAVGQQFSVSLLLPAPAGALAVPPSALL PAGKGHVLYAASDAVGGEKGAMRLRAVAVQLLGGDESISVVVPDSKDGSTALTAGEQV VTRGTALLKSMLPLQ" misc_feature complement(<1009430..1009906) /locus_tag="Alide2_0964" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" misc_feature complement(1009832..>1009906) /locus_tag="Alide2_0964" /note="Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849" /db_xref="CDD:133458" gene 1010422..1010979 /locus_tag="Alide2_0965" /db_xref="GeneID:10481989" CDS 1010422..1010979 /locus_tag="Alide2_0965" /inference="similar to AA sequence:KEGG:Daci_2711" /note="manually curated; KEGG: dac:Daci_2711 cytochrome b561" /codon_start=1 /transl_table=11 /product="cytochrome b561" /protein_id="YP_004386890.1" /db_xref="GI:330823587" /db_xref="InterPro:IPR011577" /db_xref="GeneID:10481989" /translation="MIFRNSRDRYGNFVVALHWLMLVLLAAVYASMELCGFAPKGSEL RANMKSLHFLLGLSVLALVAVRLCVRWVAGAAPAIEPPMGRWPALMARLMHAALYALM IAAALLGWLALSTAAKPVTLFGFALPMLTSANEALAHPLKDLHEALATAGYALIGLHA AAALLHHYVVHDNTLVRMLPRRGSR" misc_feature 1010428..1010967 /locus_tag="Alide2_0965" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene 1011005..1011700 /locus_tag="Alide2_0966" /db_xref="GeneID:10481990" CDS 1011005..1011700 /locus_tag="Alide2_0966" /inference="protein motif:PFAM:PF01988" /note="PFAM: Domain of unknown function DUF125, transmembrane; KEGG: dac:Daci_2712 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386891.1" /db_xref="GI:330823588" /db_xref="InterPro:IPR008217" /db_xref="GeneID:10481990" /translation="MKFLHRERHRTEHIGWLRAAVLGANDGIISTASLVVGVAAAQAS HASIMTTAVAGLVAGAMSMAAGEYVSVFSQADTEKADLAREHRELTENPEAEHRELTA IYTQRGIAPALASEVATQLMAHDALGAHARDELGISEALSAKPLQAALASAASFAVGA ALPLAVVMLAPGPSLLAWTVATAIFFLALLGVLAARIGGAPVLKSASRVALWGTLAMA ITAGVGAMFGAAP" misc_feature 1011038..1011685 /locus_tag="Alide2_0966" /note="Nodulin-21 and CCC1-related protein family; Region: Nodulin-21_like_1; cd02432" /db_xref="CDD:153123" gene complement(1011703..1013100) /locus_tag="Alide2_0967" /db_xref="GeneID:10481991" CDS complement(1011703..1013100) /locus_tag="Alide2_0967" /inference="protein motif:PFAM:PF00512" /note="manually curated; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: dac:Daci_2713 histidine kinase; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_004386892.1" /db_xref="GI:330823589" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="GeneID:10481991" /translation="MHPPSAPSNDTAWSLHRRLAVGLILCIGGTFAAVFPVLDRLIDR AIYQQMDLTLSQRAAAVGRALQEPDPQRLERLMPEYEPRGHTEFFTVFNEDNGQAVLR SPSSAGAVLPVGLAAQGTPRYYDVMLPDGHAGRALATHVALHGSQNRLLVVATEREGW DRTERRVHFALLVGIALATLLATGSALLLVQRVIVVLRRTGAAAARLNADQRMQPLGG DLPRELKPFADAFNLGLRHLYTAIERERQFSRDVAHELRTPLAEIRTSAESALSADDP ILAQHSLRAAVDATARMQRSVDTLLLLARLESGQHTQAPDPLDVAGLVRELMAALEGM QARRRLTVQADLPPSAWVRGDLGVIERILSNLLRNALEYAPDGDAITCRLERGDAGWL LSIDNAAPDLREGDLEHLGHRFWRKSSEGGTAHHAGLGLALAFALARAIDLPLRFSLQ GGRLTARLGPWVALV" misc_feature complement(1011853..1013061) /locus_tag="Alide2_0967" /note="heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386" /db_xref="CDD:162333" misc_feature complement(1012186..1012377) /locus_tag="Alide2_0967" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(1012201..1012203,1012213..1012215, 1012222..1012224,1012234..1012236,1012243..1012245, 1012255..1012257,1012303..1012305,1012312..1012314, 1012324..1012326,1012333..1012335,1012345..1012347, 1012357..1012359)) /locus_tag="Alide2_0967" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(1012339..1012341) /locus_tag="Alide2_0967" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(<1011853..1012041) /locus_tag="Alide2_0967" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene complement(1013104..1013769) /locus_tag="Alide2_0968" /db_xref="GeneID:10481992" CDS complement(1013104..1013769) /locus_tag="Alide2_0968" /inference="protein motif:PFAM:PF00072" /note="KEGG: dac:Daci_2714 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal" /codon_start=1 /transl_table=11 /product="winged helix family two component transcriptional regulator" /protein_id="YP_004386893.1" /db_xref="GI:330823590" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10481992" /translation="MRILIVEDSETLSEALNRSLRIEGYACDIAADGQAALQFLKSYR YDAIILDLMLPRVDGFGVLQALGSDAGAAPVLVLSAREQLDDRVRALDAGADDYLTKP FELAELLARLRALVRRPAQRDTPVLRHGELAVDPRSRTARWRGDDLKLTPKEYGCLEL LLRRQGAVLSRTQIFEHLYDSSSDASDKVVEVIVSTLRTKLAQCGLGELIVTRRGFGY VLM" misc_feature complement(1013110..1013769) /locus_tag="Alide2_0968" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature complement(1013458..1013760) /locus_tag="Alide2_0968" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1013464..1013469,1013476..1013478, 1013533..1013535,1013593..1013595,1013617..1013619, 1013746..1013751)) /locus_tag="Alide2_0968" /note="active site" /db_xref="CDD:29071" misc_feature complement(1013617..1013619) /locus_tag="Alide2_0968" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1013593..1013601,1013605..1013610)) /locus_tag="Alide2_0968" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1013461..1013469) /locus_tag="Alide2_0968" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1013110..1013391) /locus_tag="Alide2_0968" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(1013119..1013121,1013134..1013136, 1013167..1013172,1013194..1013196,1013203..1013205, 1013257..1013262,1013317..1013319)) /locus_tag="Alide2_0968" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 1013927..1014085 /locus_tag="Alide2_0969" /db_xref="GeneID:10481993" CDS 1013927..1014085 /locus_tag="Alide2_0969" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386894.1" /db_xref="GI:330823591" /db_xref="GeneID:10481993" /translation="MDMEHIEGLKWIPLNDDDGGTKWNRDGSEAGYRMVALSGERSKS QEYEHGKD" gene 1014281..1014526 /locus_tag="Alide2_0970" /pseudo /db_xref="GeneID:10481994" gene 1014693..1015760 /locus_tag="Alide2_0971" /db_xref="GeneID:10481995" CDS 1014693..1015760 /locus_tag="Alide2_0971" /inference="protein motif:PFAM:PF08240" /note="PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: rpa:RPA3655 alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase GroES domain-containing protein" /protein_id="YP_004386895.1" /db_xref="GI:330823592" /db_xref="GO:0008270" /db_xref="GO:0016491" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="GeneID:10481995" /translation="MISYDVAECGQPLVRNERATPRPVGDQVLVRVEAAGVCHSDLHI WHGSYDLGNGKKMSMIDRGMKLPLTMGHEIAGEVVAVGDAVKDVAVGKRYLVFPWHGC GECSVCRRGDENLCLAGRSMGVFQPGGYADHVLVSHSRYLVDIGDMPPVHAAPYACSG LTTYSALKKIPAQVLKDEKLIIFGAGGLGLMAILLARAMGSAGVIVIEPDAAKRAAAL QAGALAAFDPGQDGYMAQVRQAAGGAVWAIIDCVGSSQTVQAGIDMLTKGGQLVQIGL FGGHVDLPTPSMALRAITYQGTYVGNLRELQELMQLVKDKRLQPVPSTCLPFGKAFTA LLALEEGKAVGRQILTPEGAC" misc_feature 1014693..1015745 /locus_tag="Alide2_0971" /note="6-hydroxyhexanoate dehydrogenase; Region: 6_hydroxyhexanoate_dh_like; cd08240" /db_xref="CDD:176202" misc_feature 1014693..1015745 /locus_tag="Alide2_0971" /note="Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064" /db_xref="CDD:31264" misc_feature order(1014804..1014812,1014819..1014821,1015164..1015166, 1015176..1015178,1015242..1015259,1015314..1015319, 1015329..1015331,1015374..1015376,1015443..1015448, 1015452..1015454,1015512..1015517,1015584..1015592) /locus_tag="Alide2_0971" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176202" misc_feature order(1014804..1014806,1014810..1014812,1014906..1014908, 1015164..1015166) /locus_tag="Alide2_0971" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176202" gene complement(1015763..1016845) /locus_tag="Alide2_0972" /db_xref="GeneID:10481996" CDS complement(1015763..1016845) /locus_tag="Alide2_0972" /inference="protein motif:PFAM:PF10282" /note="PFAM: Lactonase, 7-bladed beta propeller; KEGG: dac:Daci_4552 putative hemagglutinin-related protein" /codon_start=1 /transl_table=11 /product="Lactonase, 7-bladed beta propeller" /protein_id="YP_004386896.1" /db_xref="GI:330823593" /db_xref="InterPro:IPR019405" /db_xref="GeneID:10481996" /translation="MTRPVFAYVGSRTTRERNARGEGITVFRVDEERGTLDRIQTVAH LTNPSFLAMNARGDRLYTVHGDGHEVSVLAVDRETGLLAFMQTQDCGGRNPVHLSIAP DGRHLVVSDHLGQQGGTVVVLPIAPDGLLGPVQQRVALPGEPGPHRKEQPFAKPHFNP FAPGGRFVLVPDKGLDRVFVFSFEQGRLAPAAQPWLQCREGAGPRHLAFHPALPRAYV VNELDSTVLACSFDAATGRMEGLQVLSTLPDHFVGNSRAAEIEVSRDGRRVHASNRGA DSIAVFDVDAATGRLFWRGAFPAGGRTPRFFASSPLGSRMFVLNEDSDGIACFALDDE APIDTRRPIASTPCGSPVCMVFSERV" misc_feature complement(1015778..1016830) /locus_tag="Alide2_0972" /note="Lactonase, 7-bladed beta-propeller; Region: Lactonase; pfam10282" /db_xref="CDD:192514" gene complement(1016842..1017579) /locus_tag="Alide2_0973" /db_xref="GeneID:10481997" CDS complement(1016842..1017579) /locus_tag="Alide2_0973" /inference="protein motif:PFAM:PF00497" /note="KEGG: dac:Daci_4553 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3" /codon_start=1 /transl_table=11 /product="ABC transporter periplasmic subunit" /protein_id="YP_004386897.1" /db_xref="GI:330823594" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10481997" /translation="MTISTQLLSTLAPRGHIRASINTGNPILARLDGDGRPAGVSVDL ARRFAQQLGLELELVVFDTAGKSVDAVTREEADFGFFAVDPVRGAGIAFSAPYVLIEG SYLVRQDSPLTGNAQVDQAGHTVVVGKGSAYDLYLTRELKQAQILRAPSSPAVVETFV QSTADVAAGVRQQLEADALRIPGLRLLPGRFMVIQQAMGIPKPRGAEAQHVLAAFVED AKASGFVADALARHGIEGATVAPRADA" misc_feature complement(1016848..1017570) /locus_tag="Alide2_0973" /note="ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]; Region: HisJ; COG0834" /db_xref="CDD:31176" misc_feature complement(<1017073..1017525) /locus_tag="Alide2_0973" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature complement(order(1017184..1017186,1017319..1017321, 1017391..1017393,1017508..1017510)) /locus_tag="Alide2_0973" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature complement(order(1017091..1017093,1017109..1017111, 1017121..1017123)) /locus_tag="Alide2_0973" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" gene complement(1017592..1018533) /locus_tag="Alide2_0974" /db_xref="GeneID:10481998" CDS complement(1017592..1018533) /locus_tag="Alide2_0974" /inference="protein motif:PFAM:PF07729" /note="KEGG: dac:Daci_4554 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004386898.1" /db_xref="GI:330823595" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10481998" /translation="MKTATSISRQILALARSEQWTSGVHLAAQGLADRLRVSRQPIND ALQLLAEHGIAQRERNRGFFLAVPHDQIPDDLLPEAPASDADLVEATYFRIAEDRLRG TLPESVTEAALRTRYALSKSQLSAVLNRISHEGWIERKQGYGWTFAAMLTTPDSLLQS YRLRLALEPAALLEPGYRLEPAVLERCRAAEIHLLQGGIATDRADRIHDRGVNFHESL VQASGNAFFIDTIRRVNRVRRLLSYRSMQDRSRYREHCEQHLHILDLLEQERNEEASQ AMRAHLASTLRNLTNITDILQPGATAPAAPSPERAST" misc_feature complement(1018336..1018515) /locus_tag="Alide2_0974" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(1018345..1018356,1018360..1018365, 1018393..1018395,1018402..1018407,1018411..1018425, 1018444..1018449,1018453..1018455)) /locus_tag="Alide2_0974" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(1017667..1018317) /locus_tag="Alide2_0974" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature complement(1017682..1018002) /locus_tag="Alide2_0974" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene complement(1018530..1021184) /locus_tag="Alide2_0975" /db_xref="GeneID:10481999" CDS complement(1018530..1021184) /locus_tag="Alide2_0975" /EC_number="4.2.1.3" /inference="protein motif:PRIAM:4.2.1.3" /note="KEGG: dac:Daci_4555 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel" /codon_start=1 /transl_table=11 /product="Aconitate hydratase" /protein_id="YP_004386899.1" /db_xref="GI:330823596" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR001030" /db_xref="GeneID:10481999" /translation="MENTENFPPRAADLDGARYLVADLRGALGERLARMPVVLRLLLE NVLRTTQGQERAGAVQALADWLERGTSEAEIAYQPGRVLMHDTTSTPALVDIAAMRDA LHEAGVDPALLNPVLPVDVSVDHSLAVEAYAAAGAAQANMGHEIRRNAERYRFLRWAS KALDKVRIHPPGTGIMHTINLEQLATVVTTERRAGALWAVPDMMLGTDSHTPMVNGIG VLGWGVGGLEAQTVMFGMPTMLRIPEVIGVRLTGALRPGVQASDLALVVTSRLRAMGV AGEFVEYFGSGVSTLAAGERAVIANMAPEYGATTGYFAVDGRTLDYLRATGRSEESIR LVEAYMRHQGLWFDPAAEPRYTRVLEIDLDTVGWHIAGPRRPQDLLDYGDSARALQDA AFTPQPGSALPPHAVALAAITSCTNTSDPALLIAAGLVARKARALGLRVPPWVKTSLA PGSPAAASYLERAGLLDDLEAVGFGIVGYGCTTCIGNSGPLTEPIRQAQQAGQVKAVA IQSGNRNFPGRVHPDIELGFLMSPPMVIAFGLGGDAARDLRTEPVQTGADGRPVMLAD LMPTRGEVQALLAQALRPDDFARDFARASLNPAWHALQAPQGALFPWNPQSTALRRPP FASLSEGSQLGRYQAHPLLVVGDDVTTDHISPASAIPPDSLVADFLVERGDDRGDLNV FASRRGNWEVMLRASFHSKTLGNLLAPGAPVAHTVHAPSGQVLPLWEVAQRYRDAGQS VVLVAGERYGTGSSRDWAAKGQRLLGIRAVLAMSFERIHRSNLIGMGILPLRLPRDAS PQALQIAPGDRVEVDAPAASLAPRCPVAVRILRRDGSVQPLAATAAVETQLEVDLLRR GGVIPSILQQAVAQARRGCLGPSMTMAA" misc_feature complement(1018578..1021184) /locus_tag="Alide2_0975" /note="aconitate hydratase; Provisional; Region: acnA; PRK12881" /db_xref="CDD:183810" misc_feature complement(1019559..1020944) /locus_tag="Alide2_0975" /note="Aconitase A catalytic domain; Region: AcnA_IRP; cd01586" /db_xref="CDD:153136" misc_feature complement(order(1019628..1019630,1019643..1019645, 1019730..1019732,1020558..1020563,1020921..1020923, 1020930..1020932)) /locus_tag="Alide2_0975" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153136" misc_feature complement(order(1019646..1019648,1019730..1019735, 1019742..1019744,1019940..1019942,1020555..1020557)) /locus_tag="Alide2_0975" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153136" misc_feature complement(1018743..1019255) /locus_tag="Alide2_0975" /note="Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme...; Region: Aconitase_swivel; cl00215" /db_xref="CDD:185833" misc_feature complement(1018920..1018928) /locus_tag="Alide2_0975" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73200" gene 1021270..1022241 /locus_tag="Alide2_0976" /db_xref="GeneID:10482000" CDS 1021270..1022241 /locus_tag="Alide2_0976" /inference="similar to AA sequence:KEGG:Vapar_6186" /note="KEGG: vap:Vapar_6186 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386900.1" /db_xref="GI:330823597" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482000" /translation="MKLSRRHALLAAAAIALPAWAQDYPARAITLVVPFTAGGGVDAV ARLLAEKLRASLKQPVVVDNKPGASGMLGAAAVAKAPGDGYTLLLGSAGETAINPLVY KARMQYQPQKDLAPITLVTRVPNVLVASPGFPAKNVAELVSYAKANPGKVGYATSGVG NPQHLNGELLASVAGIRLNHVPYKGAANQLVDVASGVVDMAFVSYAGAAPFIKGGRVK VLAVTSARRASFAPDIPAIAETPATASYSLENWFGLFAPASTPAAIQAKLNAAAADAL KDPELIKRLREQGGEPAPMTQQQFRDFIAQETQKYAQIVESAHITPE" sig_peptide 1021270..1021335 /locus_tag="Alide2_0976" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" misc_feature 1021333..1022223 /locus_tag="Alide2_0976" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1021399..1022229 /locus_tag="Alide2_0976" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1022296..1023285 /locus_tag="Alide2_0977" /db_xref="GeneID:10482001" CDS 1022296..1023285 /locus_tag="Alide2_0977" /inference="similar to AA sequence:KEGG:Daci_4557" /note="KEGG: dac:Daci_4557 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386901.1" /db_xref="GI:330823598" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482001" /translation="MNPCSNARRAFIAGAAMALACNCALGQTGAVGYPVRAITIVVPF AAGGNTDVKTRLVAKQLGEILGQPVVIDNKPGASGNIGMELVNRAAPDGYTLGMGSFG PLAVNPWIYPKLNFNPRSFVPIILLEKSPLVLVTPADKPYQSVKDVIAAAKARPGHLN IANAGPGGAHHLSAELFESAAGIDMLGVPFKGGGPAAQALLAGQVDLMFEQTSAAVPS IQARKIRALGVTSAQRLQQLPDVPSFAEQGLPEVTVSNWMGYVAPKGTPPDIVARLHA AFAKAMEHPEVKDRILAQGNEFGGGSSQDFASFIDGESAKWSRLVKARNIRMD" sig_peptide 1022296..1022376 /locus_tag="Alide2_0977" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.964) with cleavage site probability 0.941 at residue 27" misc_feature 1022383..1023279 /locus_tag="Alide2_0977" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1022458..1023273 /locus_tag="Alide2_0977" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1023400..1023756 /locus_tag="Alide2_0978" /db_xref="GeneID:10482002" CDS 1023400..1023756 /locus_tag="Alide2_0978" /inference="protein motif:PFAM:PF03091" /note="PFAM: Divalent ion tolerance protein, CutA1; KEGG: dia:Dtpsy_2844 CutA1 divalent ion tolerance protein" /codon_start=1 /transl_table=11 /product="CutA1 divalent ion tolerance protein" /protein_id="YP_004386902.1" /db_xref="GI:330823599" /db_xref="InterPro:IPR004323" /db_xref="GeneID:10482002" /translation="MLCQTPAMHSTPTPSCPVAVVTTTVASAADAQRLAAGAVQARLA ACVQVEAIASHYVWQGAQHEDAEWRLVCKTLPAAAPALLVWLRAQHPYEVPQLLTHTV QAEADYAQWVAQQVDG" sig_peptide 1023400..1023486 /locus_tag="Alide2_0978" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.868) with cleavage site probability 0.826 at residue 29" misc_feature <1023535..1023747 /locus_tag="Alide2_0978" /note="CutA1 divalent ion tolerance protein; Region: CutA1; cl00584" /db_xref="CDD:186092" gene complement(1023771..1024937) /locus_tag="Alide2_0979" /db_xref="GeneID:10482003" CDS complement(1023771..1024937) /locus_tag="Alide2_0979" /inference="protein motif:PFAM:PF01188" /note="KEGG: dac:Daci_3339 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal" /codon_start=1 /transl_table=11 /product="Mandelate racemase/muconate lactonizing protein" /protein_id="YP_004386903.1" /db_xref="GI:330823600" /db_xref="InterPro:IPR013341" /db_xref="InterPro:IPR013342" /db_xref="GeneID:10482003" /translation="MRIVNILESTRPIQSDIRNAYIDFSKMTLSLVAVVTDVVRDGRP VVGYGFNSNGRYGQGALMRERFIPRVLEADPASLLDETGENLDPHRIWARMMANEKPG GHGERSVAVGTIDMAVWDAVAKIAGKPLFQLLAERYGTGTPNPRVFVYAAGGYYYPGK GLDGLRQEMEGYLARGYSVVKMKIGGASLAEDCERIESVLRILGPGQQLAVDANGRFD LQTALDYGKALSQYPLFWYEEAGDPLDYELQARLGEAYAGPLATGENLFSMQDARNLI RHGGMRPDRDWLQFDCALSYGLVEYLRTLDMLKAHGWSPSRCIPHGGHQMSLAIAAGL GLGGNESYPDLFQPYGGFPDGVKVDNGHVTLPPLPGIGFEGKADLIREMHALAA" misc_feature complement(1023780..1024934) /locus_tag="Alide2_0979" /note="Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved...; Region: MR_like_1; cd03326" /db_xref="CDD:48201" misc_feature complement(1023786..1024874) /locus_tag="Alide2_0979" /note="L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]; Region: COG4948" /db_xref="CDD:34556" misc_feature complement(order(1023918..1023920,1023975..1023977, 1024065..1024067,1024146..1024148,1024224..1024226, 1024230..1024232,1024302..1024304,1024389..1024391, 1024395..1024397,1024488..1024490)) /locus_tag="Alide2_0979" /note="putative active site pocket [active]" /db_xref="CDD:48201" misc_feature complement(order(1024146..1024148,1024224..1024226, 1024302..1024304)) /locus_tag="Alide2_0979" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:48201" gene complement(1024963..1025667) /locus_tag="Alide2_0980" /db_xref="GeneID:10482004" CDS complement(1024963..1025667) /locus_tag="Alide2_0980" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="KEGG: vap:Vapar_5678 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004386904.1" /db_xref="GI:330823601" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10482004" /translation="MSNEPRPRQAVVTGSSSGIGLAIAQALLDGGWHVAGLDVAPPTL DRPGFTPLAVDLADGPALERAAAGLQGVDALVHAAGVLRVGPLGRLDAAAGALMWQLH VDAATRLANALVPAMADRGQGRVVFIGSRVAQGLPGRGQYAATKAALVALARSWAVEV APRGVTVNVVSPGATATAMLQDPARAASAPRLPPIGRLVEPAEIAALVAYLLSPPAAA ITGQELRICGGASLAQ" misc_feature complement(1024972..1025646) /locus_tag="Alide2_0980" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(1024990..1025640) /locus_tag="Alide2_0980" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature complement(order(1025134..1025139,1025143..1025154, 1025230..1025232,1025242..1025244,1025278..1025286, 1025365..1025367,1025428..1025436,1025500..1025508, 1025548..1025556,1025611..1025622,1025626..1025628)) /locus_tag="Alide2_0980" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature complement(order(1025230..1025232,1025242..1025244, 1025278..1025280,1025362..1025364)) /locus_tag="Alide2_0980" /note="active site" /db_xref="CDD:187544" gene complement(1025657..1026622) /locus_tag="Alide2_0981" /db_xref="GeneID:10482005" CDS complement(1025657..1026622) /locus_tag="Alide2_0981" /inference="similar to AA sequence:KEGG:Daci_3341" /note="KEGG: dac:Daci_3341 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386905.1" /db_xref="GI:330823602" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482005" /translation="MHRSHFLRAGLGAAILALAGHAAAQTYPAKPVRMVIPFPPGGTL DAVGRMLAQKLGEQMGQPFVVENKPGGNGVIGADIVAKAPADGYTLLFNASTFTTAPM TMKSVPYSVTRDFAPVALVAKAPLSVAINKNLPITDIRSLIAHAKAHPGKMTFAVGSI GSAGHLSTELLKRAGQIDYLVVPYKGTAPAFQDLIGGQIDGFIDPILGSLQYHKSGML RVVAVTSAQRAASLPDVPTVAETIPGYEFYSWYGLWAPAKAAPEIVQRLNAEVNKALT GGMKERLQEQGLLLSPGSAEDFARFQRSDMERAQKIVTEGGIRVE" sig_peptide complement(1026548..1026622) /locus_tag="Alide2_0981" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.923 at residue 25" misc_feature complement(1025666..1026550) /locus_tag="Alide2_0981" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1025669..1026484) /locus_tag="Alide2_0981" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1026654..1027592) /locus_tag="Alide2_0982" /db_xref="GeneID:10482006" CDS complement(1026654..1027592) /locus_tag="Alide2_0982" /EC_number="4.2.1.52" /inference="protein motif:PRIAM:4.2.1.52" /note="KEGG: dac:Daci_3342 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_004386906.1" /db_xref="GI:330823603" /db_xref="InterPro:IPR002220" /db_xref="GeneID:10482006" /translation="MPSIANYRGIIPAISCPFTPDHRIDEPALRRLASWLAGHDGVVA VMTNGHTGEVFALTPAERAEVTRIVADELKGRLPVISSIVCEGLADAAEHARAAQAAG AVALDVMPPHHWLRFGFTPGHALQYFEAIHKAAPQLDLVCHVYPAWTRASYSSQLLAD LARLPYVQAFKVGQRDMNKYARDIQAIREADASKAILTCHDEYLLASMVQGVDGALVG FATFIPQLIIDLWNAVKAGDLKKAMQVQAVITPLKDAVYGGGEPTGEAHARMKAGMYL AGVIGDATVRPPTEAPSAQELAALRAAVRQAGLLQH" misc_feature complement(1026663..1027580) /locus_tag="Alide2_0982" /note="Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329" /db_xref="CDD:30677" misc_feature complement(1026681..1027565) /locus_tag="Alide2_0982" /note="Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408" /db_xref="CDD:188630" misc_feature complement(order(1027080..1027082,1027164..1027166, 1027440..1027448,1027455..1027457,1027554..1027556)) /locus_tag="Alide2_0982" /note="inhibitor site; inhibition site" /db_xref="CDD:188630" misc_feature complement(order(1026945..1026947,1027080..1027082, 1027164..1027166,1027440..1027448,1027455..1027457)) /locus_tag="Alide2_0982" /note="active site" /db_xref="CDD:188630" misc_feature complement(order(1026729..1026734,1027212..1027214, 1027224..1027226,1027254..1027259,1027329..1027334, 1027425..1027430,1027443..1027445)) /locus_tag="Alide2_0982" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188630" misc_feature complement(1027080..1027082) /locus_tag="Alide2_0982" /note="catalytic residue [active]" /db_xref="CDD:188630" gene 1027711..1028664 /locus_tag="Alide2_0983" /db_xref="GeneID:10482007" CDS 1027711..1028664 /locus_tag="Alide2_0983" /inference="protein motif:PFAM:PF00126" /note="PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: aav:Aave_1392 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386907.1" /db_xref="GI:330823604" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482007" /translation="MGPGNRPLDLEWLEDFLALAECGNFSRAAEARAIAQPAFSRHIR ALEEWVGVDLFDRSAHPAALTPAGQRFLPLLEAVLANLEAARIKARAAHDQAAASLRF AATHVLSLTFFPPWLADMESQLRLGPIQTMSDSSRACEELMLQRRVQFVLCHGHADVP GRLDEARYPMLRLGRDVLRPVSAPHPDGTRGRALHAIGLPPPVPMLAYSEASGLGRIV RAQLRAFAQQPGVRTAEPGELEEVFTAHHAVLLKTMALEGRGIAWLPESLIVRELQCG ALVAAGPEAWSIPVEIRLYRQHAEMAAVAESLWQLAASRQD" misc_feature 1027714..1028640 /locus_tag="Alide2_0983" /note="cell density-dependent motility repressor; Provisional; Region: PRK10082" /db_xref="CDD:182228" misc_feature 1027738..1027917 /locus_tag="Alide2_0983" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1027987..1028655 /locus_tag="Alide2_0983" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1028678..1029802) /locus_tag="Alide2_0984" /db_xref="GeneID:10482008" CDS complement(1028678..1029802) /locus_tag="Alide2_0984" /inference="protein motif:TFAM:TIGR00064" /note="TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: dia:Dtpsy_2843 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="signal recognition particle-docking protein FtsY" /protein_id="YP_004386908.1" /db_xref="GI:330823605" /db_xref="GO:0005525" /db_xref="InterPro:IPR000897" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004390" /db_xref="InterPro:IPR013822" /db_xref="GeneID:10482008" /translation="MFSFFKKKSPSPAEPSSAPVPDAASAPAADAPTGGGALGWLRKS FGAQDAAAPQAAPAADEAPPAVPEPAPKPKGTRQGWMERLKSGLRKTGGSIATVFTGT QINDALYEELEDALLMADTGVKATQHLLADLRRRVKEAKATEPAAVKALLADALADLL RPLEKPLVIGAHQPTVIMVAGVNGAGKTTSIGKLTRHLADHGESVLLAAADTFRAAAR EQLGVWATRNTVEIISQEGGDPAAVSFDAVTAGRARGKDVVLVDTAGRLPTQLHLMEE LKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDDALSLTGLIVTKLDGTAKG GVLAAIAQERPVPVYFIGVGEKVEDLETFDAREFAQALLA" misc_feature complement(1028681..1029580) /locus_tag="Alide2_0984" /note="signal recognition particle-docking protein FtsY; Provisional; Region: PRK10416" /db_xref="CDD:182441" misc_feature complement(1028747..1029280) /locus_tag="Alide2_0984" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene 1029832..1031262 /locus_tag="Alide2_0985" /db_xref="GeneID:10482009" CDS 1029832..1031262 /locus_tag="Alide2_0985" /EC_number="3.4.24.64" /inference="protein motif:PRIAM:3.4.24.64" /note="KEGG: dia:Dtpsy_2842 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal" /codon_start=1 /transl_table=11 /product="processing peptidase" /protein_id="YP_004386909.1" /db_xref="GI:330823606" /db_xref="InterPro:IPR007863" /db_xref="InterPro:IPR011765" /db_xref="GeneID:10482009" /translation="MKRAITLLGLLACLHAGAQTAPVPPATAPSAATATGAQQFTLRN GMQLIVQPDRRAPTAVHMVWVRVGSMDEVDGTSGVAHALEHMMFKGTKKLPPGEFSRR VAALGGQENAFTSRDYTGYYQQIPASRLADVMRLEADRFAHNQWPDAEFTREIEVVKE ERRMRTEDQPRAALIEQLYASTFIASPYRRPVVGWMSDLDAMTPADVRQFHRRWYVPR NAAVVVAGDVDPAKVLALAQKTYGAIPPRAVPARKPRTEPVQQGLRRIDFKAPAEQAY VALAFHVPGISRIEDMGDSDRDGLALLVLSAVLSGYDGARLERALTQGADRVADAADS QASVFGRGPSLFLMTGVPAAGKTSSQVEDALRAEIARVAREGVSEAELSRVKTQWAAS TIYARDSLYSQASDLGSNWVQGLPLDATERLLRLLRAVTPEQVQSVAARYFGDDQLTV TTLLPQPVAGGARRAAPAPGTGERMH" sig_peptide 1029832..1029888 /locus_tag="Alide2_0985" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.600 at residue 19" misc_feature 1029949..1031199 /locus_tag="Alide2_0985" /note="Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612" /db_xref="CDD:30957" misc_feature 1030018..1030413 /locus_tag="Alide2_0985" /note="Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675" /db_xref="CDD:189663" misc_feature 1030432..1030995 /locus_tag="Alide2_0985" /note="Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193" /db_xref="CDD:191225" gene 1031276..1032634 /locus_tag="Alide2_0986" /db_xref="GeneID:10482010" CDS 1031276..1032634 /locus_tag="Alide2_0986" /inference="protein motif:PFAM:PF05193" /note="KEGG: dia:Dtpsy_2841 peptidase M16 domain protein; manually curated; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal" /codon_start=1 /transl_table=11 /product="peptidase M16 domain-containing protein" /protein_id="YP_004386910.1" /db_xref="GI:330823607" /db_xref="GO:0004222" /db_xref="GO:0008270" /db_xref="InterPro:IPR007863" /db_xref="InterPro:IPR011765" /db_xref="GeneID:10482010" /translation="MNKIIKTIAARALLASVGAIFYMNNAWALLPIQHWTEPSGARVW LVESPAIPMVDVQVDFDAGARRDPAPQAGLAAAAALMSSKGVEAGGADEPALDENDLG EAWADLGASLEAGAERDGLVFSLRSLTEPDLLERAARLAARQLGQPSFAQNVWQRERA RWTAAIKEADTRPGTVATKAFAAAVYGGHPYGQRPTAQTLANIEAADLQAFHARYLQA CRARVSIVGALTRAQAQQLVQTLLSRLPAPPSADCAPLPAVPEVQPLEKAVQEDIPFA SAQAHVLIGQPGFVRRDPDFLALLVGNHILGGGGFTSRLTNEVREKRGLSYSVGSSFS PGLNAGAFVVGLQTRPDQAAQAVRVTRDVLKRFVEEGPTEAELRAAKDNLIGGFALRI DSNRKLLANVVNIAWNGLPLDYLEHWTDRVQALTVADIRAAFQRKLQPARMVTVVVGG QP" sig_peptide 1031276..1031362 /locus_tag="Alide2_0986" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.960) with cleavage site probability 0.958 at residue 29" misc_feature 1031357..1032628 /locus_tag="Alide2_0986" /note="Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612" /db_xref="CDD:30957" misc_feature 1031879..1032427 /locus_tag="Alide2_0986" /note="Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193" /db_xref="CDD:191225" gene 1032631..1033221 /locus_tag="Alide2_0987" /db_xref="GeneID:10482011" CDS 1032631..1033221 /locus_tag="Alide2_0987" /EC_number="2.1.1.171" /inference="protein motif:TFAM:TIGR00095" /note="TIGRFAM: RNA methyltransferase, RsmD; KEGG: dia:Dtpsy_2840 methyltransferase; PFAM: RNA methyltransferase, RsmD" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_004386911.1" /db_xref="GI:330823608" /db_xref="GO:0008168" /db_xref="InterPro:IPR004398" /db_xref="GeneID:10482011" /translation="MSRAPAKAAGEVRIIGGQWKRTRLPVAHKPGLRPTPDRVRETLF NWLGQDLTGWRCLDAFAGTGALGLEAASRGAASVLLVESDAGLAAQLETLRQRLQAGA VRVQRGDGIAALRQCQPASMDLLLIDPPFAGELFFPALQAAARAVAQDGFIYLEAPAA WTDEQLVPLGLALHRHLKAGAVHAHLLRPQQNATDM" misc_feature 1032793..>1033044 /locus_tag="Alide2_0987" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(1032805..1032825,1032874..1032879,1032952..1032957, 1032961..1032963,1033012..1033014) /locus_tag="Alide2_0987" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1033349..1033837 /locus_tag="Alide2_0988" /db_xref="GeneID:10482012" CDS 1033349..1033837 /locus_tag="Alide2_0988" /EC_number="2.7.7.3" /inference="protein motif:TFAM:TIGR01510" /note="TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; KEGG: dia:Dtpsy_2839 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase" /codon_start=1 /transl_table=11 /product="pantetheine-phosphate adenylyltransferase" /protein_id="YP_004386912.1" /db_xref="GI:330823609" /db_xref="GO:0003824" /db_xref="GO:0004595" /db_xref="InterPro:IPR001980" /db_xref="InterPro:IPR004820" /db_xref="InterPro:IPR004821" /db_xref="GeneID:10482012" /translation="MAHVVAVYPGTFDPITLGHEDLVRRAAQLFDRVIVAVAIAHHKK TLFSLDERMDMAREALSDCPQVRVEPFEGLVTEFTAARGGTAMVRGLRSGTDFDYEFQ LAGMNRALVPQIETVFLTPSSQYQFISSTLVREIAMLGGDVAQFVSPTVLQRLLAKVG KS" misc_feature 1033349..1033807 /locus_tag="Alide2_0988" /note="Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]; Region: NadD; COG1057" /db_xref="CDD:31257" misc_feature 1033361..1033819 /locus_tag="Alide2_0988" /note="Phosphopantetheine adenylyltransferase; Region: PPAT; cd02163" /db_xref="CDD:173914" misc_feature order(1033370..1033384,1033400..1033405,1033412..1033414, 1033460..1033462,1033475..1033477,1033565..1033573, 1033613..1033618,1033622..1033624,1033643..1033648, 1033655..1033657,1033667..1033669,1033709..1033711, 1033721..1033723,1033730..1033732) /locus_tag="Alide2_0988" /note="active site" /db_xref="CDD:173914" misc_feature 1033394..1033405 /locus_tag="Alide2_0988" /note="(T/H)XGH motif; other site" /db_xref="CDD:173914" gene complement(1033993..1034307) /locus_tag="Alide2_0989" /db_xref="GeneID:10482013" CDS complement(1033993..1034307) /locus_tag="Alide2_0989" /inference="protein motif:PFAM:PF04972" /note="KEGG: dia:Dtpsy_2837 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria" /codon_start=1 /transl_table=11 /product="transport-associated protein" /protein_id="YP_004386913.1" /db_xref="GI:330823610" /db_xref="InterPro:IPR007055" /db_xref="InterPro:IPR014004" /db_xref="GeneID:10482013" /translation="MKYASAIAFALLTGATIVSTGCSVARDQQTVGSYVDDAAITTAV KAKMAEDKGVSAAAISVETLNGTVQLSGFAKSQAEKDRAESIARTTKNVRGVRNSIVV RP" sig_peptide complement(1034230..1034307) /locus_tag="Alide2_0989" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.977 at residue 26" misc_feature complement(1033996..1034187) /locus_tag="Alide2_0989" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" gene complement(1034446..1034838) /locus_tag="Alide2_0990" /db_xref="GeneID:10482014" CDS complement(1034446..1034838) /locus_tag="Alide2_0990" /inference="protein motif:PFAM:PF05957" /note="PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_2835 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386914.1" /db_xref="GI:330823611" /db_xref="InterPro:IPR010279" /db_xref="GeneID:10482014" /translation="MTVQTTTKKALETAHQAADDILDGASDTVQSARDMANRSLDKAD SRIHHLRQDMDPRIDDIAAKAQDLASRGIAYCANTSDRARRQLRQAADTTTRYVSEKP GTSLLIAAAAGAAFATAVMLARRSGERH" gene complement(1034904..1035068) /locus_tag="Alide2_0991" /db_xref="GeneID:10482015" CDS complement(1034904..1035068) /locus_tag="Alide2_0991" /inference="protein motif:PFAM:PF07043" /note="PFAM: Protein of unknown function DUF1328; KEGG: dia:Dtpsy_2834 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386915.1" /db_xref="GI:330823612" /db_xref="InterPro:IPR009760" /db_xref="GeneID:10482015" /translation="MLHYAVVFLVIALVAAVFGFGGIAAGAVGIAKVLFFVFVIMAVV SFIIGLLKKN" sig_peptide complement(1034988..1035068) /locus_tag="Alide2_0991" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.638 at residue 27" gene complement(1035211..1036554) /locus_tag="Alide2_0992" /db_xref="GeneID:10482016" CDS complement(1035211..1036554) /locus_tag="Alide2_0992" /inference="protein motif:PFAM:PF05227" /note="KEGG: ajs:Ajs_3510 multi-sensor signal transduction histidine kinase; PFAM: CHASE3; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_004386916.1" /db_xref="GI:330823613" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="GO:0046983" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR007891" /db_xref="InterPro:IPR011712" /db_xref="GeneID:10482016" /translation="MIWSRLRKMAISLPAALLAVVLLVGINETGYMRSHDAVGDLARS HATRTALDRLLQNMLNAETGLRGYLLTGDDRYLQPYNEAVATINSNLDELRQTYQRLP QDQADFAQLSQQIARKLSELDLSLNLRRQNNDDAWKFVLSTDVGKDNMDAIRAIAARL VERSAQQAQGSTQEILHSLMLSRIGIATVAVIGLLAFYMYLRQTNALQEANEREQEVL ARERDRLEQLVRERTASLSALANHLQQVREDERAHLARELHDELGALLTAAKLDVARL KSRIDMQVPEHAERIQHLTETLNNGIALKRRIIENLRPSSLSNLGLTASLEILTRDFA QSSNVQVEISLEEAHLSDTAQLTVYRLVQESLTNIGKYANARKVLVCVHNHTNHVSVQ VRDDGAGFDTTRIRADAHGLLGMRHRVEAAGGSLTVSSTPGEGTLVSAVLPHRIA" misc_feature complement(1036033..1036446) /locus_tag="Alide2_0992" /note="CHASE3 domain; Region: CHASE3; cl05000" /db_xref="CDD:195024" misc_feature complement(1035226..1036101) /locus_tag="Alide2_0992" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature complement(1035604..1035807) /locus_tag="Alide2_0992" /note="Histidine kinase; Region: HisKA_3; pfam07730" /db_xref="CDD:191831" misc_feature complement(1035226..1035492) /locus_tag="Alide2_0992" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene 1036664..1037296 /locus_tag="Alide2_0993" /db_xref="GeneID:10482017" CDS 1036664..1037296 /locus_tag="Alide2_0993" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_2832 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal" /codon_start=1 /transl_table=11 /product="two component LuxR family transcriptional regulator" /protein_id="YP_004386917.1" /db_xref="GI:330823614" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000792" /db_xref="InterPro:IPR001789" /db_xref="GeneID:10482017" /translation="MIKIGIVDDHAIVRSGLRQFFSEHVDLRVVGEAANGREAIDLVR AQEIDVLVMDLSMPGQSGLDALAMLRAKAPDMGILILSGYPEEHYAINLIRQGASGYL NKECDPKEIVEAIRAIALGRRYLTPAVAELLAQQLNRKGDAPPHEQLSEREFQVFLKL ARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNRLID" misc_feature 1036667..1037293 /locus_tag="Alide2_0993" /note="Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197" /db_xref="CDD:32379" misc_feature 1036679..1037020 /locus_tag="Alide2_0993" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1036685..1036690,1036823..1036825,1036847..1036849, 1036907..1036909,1036964..1036966,1036973..1036978) /locus_tag="Alide2_0993" /note="active site" /db_xref="CDD:29071" misc_feature 1036823..1036825 /locus_tag="Alide2_0993" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1036832..1036837,1036841..1036849) /locus_tag="Alide2_0993" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1036973..1036981 /locus_tag="Alide2_0993" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1037108..1037278 /locus_tag="Alide2_0993" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(1037111..1037119,1037156..1037164,1037186..1037191, 1037195..1037200,1037204..1037218,1037249..1037251) /locus_tag="Alide2_0993" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(1037144..1037146,1037150..1037152,1037156..1037158, 1037249..1037257,1037264..1037266,1037273..1037278) /locus_tag="Alide2_0993" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene complement(1037274..1037693) /locus_tag="Alide2_0994" /db_xref="GeneID:10482018" CDS complement(1037274..1037693) /locus_tag="Alide2_0994" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_2831 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain" /codon_start=1 /transl_table=11 /product="response regulator receiver" /protein_id="YP_004386918.1" /db_xref="GI:330823615" /db_xref="GO:0000156" /db_xref="InterPro:IPR001789" /db_xref="GeneID:10482018" /translation="MKLRTYIVEDNATIRENLIGTLEELAEVQAVGIAETEDEGKEWL TAHASQWDLAIVDLFLRQGSGLGVLAACRDRASEQKMVVLSNYATPDVRMRCAQLGVD AVFDKSNEIDALVDYCIVHGTQRAAAAGAPVNRSACS" misc_feature complement(1037307..1037693) /locus_tag="Alide2_0994" /note="FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784" /db_xref="CDD:31127" misc_feature complement(1037346..1037675) /locus_tag="Alide2_0994" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1037370..1037375,1037382..1037384, 1037439..1037441,1037499..1037501,1037523..1037525, 1037664..1037669)) /locus_tag="Alide2_0994" /note="active site" /db_xref="CDD:29071" misc_feature complement(1037523..1037525) /locus_tag="Alide2_0994" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1037499..1037507,1037511..1037516)) /locus_tag="Alide2_0994" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1037367..1037375) /locus_tag="Alide2_0994" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(1037799..1038563) /locus_tag="Alide2_0995" /db_xref="GeneID:10482019" CDS complement(1037799..1038563) /locus_tag="Alide2_0995" /inference="protein motif:PFAM:PF00899" /note="PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: ajs:Ajs_3507 UBA/ThiF-type NAD/FAD binding protein" /codon_start=1 /transl_table=11 /product="UBA/THIF-type NAD/FAD binding protein" /protein_id="YP_004386919.1" /db_xref="GI:330823616" /db_xref="GO:0003824" /db_xref="InterPro:IPR000594" /db_xref="InterPro:IPR007901" /db_xref="GeneID:10482019" /translation="MNDDQLLRYSRHILLDEIGIEGQERILAAHVLIVGAGGLGSPAA LFLGSAGVGRLTLVDDDVVDLTNLQRQIAHTTERVGQSKVESAAQAVHAINPLVSVHA LRQRVDAQALDRLVAQADVVLDCTDNYRTRQAINAACVRSARPLVAGAAIRFDGQISV YDPRRGDTPCYACLFPPDARFDEVACSTMGVFAPMVGIIGTMQAAEALKLIAGVGRPL AGRLLMLDGRDMQWTEMRTERDPACPVCGALHAQAG" misc_feature complement(1037835..1038563) /locus_tag="Alide2_0995" /note="molybdopterin biosynthesis protein MoeB; Provisional; Region: PRK05690" /db_xref="CDD:180204" misc_feature complement(1037856..1038542) /locus_tag="Alide2_0995" /note="ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of...; Region: ThiF_MoeB_HesA_family; cd00757" /db_xref="CDD:30111" misc_feature complement(order(1038171..1038173,1038189..1038191, 1038315..1038317,1038354..1038356,1038381..1038383, 1038387..1038389,1038447..1038449,1038453..1038455, 1038459..1038461)) /locus_tag="Alide2_0995" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:30111" misc_feature complement(order(1037856..1037861,1037865..1037867, 1037886..1037888,1037898..1037900,1038093..1038095, 1038099..1038101,1038111..1038116,1038168..1038170, 1038180..1038188,1038447..1038449)) /locus_tag="Alide2_0995" /note="substrate interface [chemical binding]; other site" /db_xref="CDD:30111" gene complement(1038631..1040067) /locus_tag="Alide2_0996" /db_xref="GeneID:10482020" CDS complement(1038631..1040067) /locus_tag="Alide2_0996" /inference="protein motif:TFAM:TIGR00225" /note="TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: ajs:Ajs_3506 C-terminal processing peptidase-3; SMART: Peptidase S41; PDZ/DHR/GLGF" /codon_start=1 /transl_table=11 /product="carboxyl-terminal protease" /protein_id="YP_004386920.1" /db_xref="GI:330823617" /db_xref="GO:0008236" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR004447" /db_xref="InterPro:IPR005151" /db_xref="GeneID:10482020" /translation="MGHKLKIAGWISVGVVAGALTTVSLQTVARGAMAPLPLEEIQQL SAVFGLIKTDYVEPVDDKKLITDAIAGMVSSLDPHSQYFDKKSFKEFREGTTGRFVGV GIEITQEDGLIKIVSPIEGSPADRAGLKTNDLITKIDDTAVKGLTLNEAVKRMRGEPN TKVTLTILRKDESRSFPVTITREEIKTQSVKAKVVEPGYAWIRLSQFQERTVDDFVRK VEEVYKQEPRLKGLVLDLRNDPGGLLDAAVAVSAAFLPENVTVVSTNGQLAESKATFK AAPEFYQRRGSGDPLKRLPAAIKTVPLVVLVNEGSASASEIVAGALQDHKRATIMGSQ TFGKGSVQTVRPLGPDTGIKLTTARYYTPSGKSIQAKGIVPDVMLDETAEGDVYASLR MREADLEKHLTSGQGEEVKDAAREKAREEARKRLEEESKKPIAERKLPEFGSDKDFQL AQALNQLKGRTVVASKTLTERKEEKKDN" misc_feature complement(<1039813..1039953) /locus_tag="Alide2_0996" /note="C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526" /db_xref="CDD:154960" misc_feature complement(1038922..1039914) /locus_tag="Alide2_0996" /note="C-terminal peptidase (prc); Region: prc; TIGR00225" /db_xref="CDD:161775" misc_feature complement(1039516..1039773) /locus_tag="Alide2_0996" /note="PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988" /db_xref="CDD:29045" misc_feature complement(order(1039600..1039605,1039612..1039617, 1039750..1039752,1039756..1039767)) /locus_tag="Alide2_0996" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29045" misc_feature complement(1038928..>1039476) /locus_tag="Alide2_0996" /note="C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560" /db_xref="CDD:143476" misc_feature complement(order(1039054..1039056,1039129..1039131)) /locus_tag="Alide2_0996" /note="Catalytic dyad [active]" /db_xref="CDD:143476" gene complement(1040154..1040897) /locus_tag="Alide2_0997" /db_xref="GeneID:10482021" CDS complement(1040154..1040897) /locus_tag="Alide2_0997" /EC_number="5.4.2.4" /inference="protein motif:TFAM:TIGR01258" /note="SMART: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; KEGG: ajs:Ajs_3505 phosphoglyceromutase; PFAM: Histidine phosphatase superfamily, clade-1" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase 1 family" /protein_id="YP_004386921.1" /db_xref="GI:330823618" /db_xref="GO:0005515" /db_xref="InterPro:IPR005952" /db_xref="InterPro:IPR013078" /db_xref="GeneID:10482021" /translation="MHKLVLIRHGESTWNLENRFTGWTDVDLTETGIEQAKNAGRLLK AEGYEFDLAYTSVLKRATRTLWHCLDEMDRTWLPVEHSWRLNERHYGALQGLNKADMA KQYGDAQVLVWRRSYDTPPPALEPTDPRCERGDIRYAGLAPEQVPLTECLKDTVARVL PYWNEAIAPTIRSGKRVLIAAHGNSIRALVKYLDGISDQDIVGLNIPNGIPLVYELDA ELKPLRSYYLGDAEAAAKAAAAVAAQGKA" misc_feature complement(<1040562..1040891) /locus_tag="Alide2_0997" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature complement(order(1040718..1040720,1040871..1040876)) /locus_tag="Alide2_0997" /note="catalytic core [active]" /db_xref="CDD:132718" misc_feature complement(1040214..>1040429) /locus_tag="Alide2_0997" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" gene 1040971..1041378 /locus_tag="Alide2_0998" /db_xref="GeneID:10482022" CDS 1040971..1041378 /locus_tag="Alide2_0998" /inference="protein motif:PFAM:PF00581" /note="KEGG: dia:Dtpsy_2827 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like" /codon_start=1 /transl_table=11 /product="Rhodanese-like protein" /protein_id="YP_004386922.1" /db_xref="GI:330823619" /db_xref="InterPro:IPR001763" /db_xref="GeneID:10482022" /translation="MNFILDNWYLVFLALASGVMLLMPVLKGAGAGSLSAAQAVQLIN REKAIVIDVCEPEEFAAGHVGGARNIPLGQLQERLPQVAKNKAVPLILVCAKGARASR AASIAKGLGYDRAQALAGGLSAWREANMPVEKA" sig_peptide 1040971..1041081 /locus_tag="Alide2_0998" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.893) with cleavage site probability 0.431 at residue 37" misc_feature 1041097..1041348 /locus_tag="Alide2_0998" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158" /db_xref="CDD:29073" misc_feature 1041250..1041252 /locus_tag="Alide2_0998" /note="active site residue [active]" /db_xref="CDD:29073" gene 1041427..1041690 /locus_tag="Alide2_0999" /db_xref="GeneID:10482023" CDS 1041427..1041690 /locus_tag="Alide2_0999" /inference="protein motif:TFAM:TIGR02181" /note="KEGG: dia:Dtpsy_2826 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin" /codon_start=1 /transl_table=11 /product="glutaredoxin 3" /protein_id="YP_004386923.1" /db_xref="GI:330823620" /db_xref="InterPro:IPR002109" /db_xref="InterPro:IPR011900" /db_xref="GeneID:10482023" /translation="MQAVKMYTTAVCPYCIRAKQLLKSKGVEQIEEIRVDADPAARVH MMEITGRRTVPQIFIGDTHVGGYDDLAALDGRGGLMPLLGALT" misc_feature 1041436..1041657 /locus_tag="Alide2_0999" /note="Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the...; Region: GRX_GRXb_1_3_like; cd03418" /db_xref="CDD:48633" misc_feature order(1041451..1041453,1041460..1041468,1041577..1041579, 1041583..1041588) /locus_tag="Alide2_0999" /note="GSH binding site [chemical binding]; other site" /db_xref="CDD:48633" misc_feature order(1041460..1041462,1041469..1041471) /locus_tag="Alide2_0999" /note="catalytic residues [active]" /db_xref="CDD:48633" gene 1041793..1042248 /locus_tag="Alide2_1000" /db_xref="GeneID:10482024" CDS 1041793..1042248 /locus_tag="Alide2_1000" /inference="protein motif:TFAM:TIGR00809" /note="KEGG: dia:Dtpsy_2825 preprotein translocase subunit SecB; TIGRFAM: Bacterial protein export chaperone SecB; PFAM: Bacterial protein export chaperone SecB" /codon_start=1 /transl_table=11 /product="protein-export protein SecB" /protein_id="YP_004386924.1" /db_xref="GI:330823621" /db_xref="GO:0051082" /db_xref="InterPro:IPR003708" /db_xref="GeneID:10482024" /translation="MATEETPVFQIQRVYLKDLSLEQPNSPAILLEQEQPSVDIQLGV QATPVAEGIFEVAVTATVQTKIKDKTVFLVEAKQAGIFEIRNVPEEQMGAIVGIACPQ IIYPYLRGNVADTITRAGFPPVHLAEINFQAMYEQQQAAAAEAGNGATQ" misc_feature 1041817..1042185 /locus_tag="Alide2_1000" /note="Preprotein translocase subunit SecB. SecB is a cytoplasmic component of the multisubunit membrane-bound enzyme termed Sec protein translocase, which is the main constituent of the General Secretory (type II) Pathway involved in translocation of nascent...; Region: Translocase_SecB; cl00251" /db_xref="CDD:185865" misc_feature order(1041844..1041846,1041856..1041858,1042009..1042011, 1042015..1042017) /locus_tag="Alide2_1000" /note="SecA binding site; other site" /db_xref="CDD:29643" misc_feature order(1042006..1042008,1042012..1042014,1042018..1042020, 1042024..1042026) /locus_tag="Alide2_1000" /note="Preprotein binding site; other site" /db_xref="CDD:29643" gene 1042315..1043307 /locus_tag="Alide2_1001" /db_xref="GeneID:10482025" CDS 1042315..1043307 /locus_tag="Alide2_1001" /inference="protein motif:HAMAP:MF_00394" /note="manually curated; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; KEGG: xtr:100490244 glycerol-3-phosphate dehydrogenase [NAD(P)+]-like; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate dehydrogenase (NAD(P)+)" /protein_id="YP_004386925.1" /db_xref="GI:330823622" /db_xref="InterPro:IPR006109" /db_xref="InterPro:IPR006168" /db_xref="InterPro:IPR011128" /db_xref="GeneID:10482025" /translation="MKIVVLGAGAWGTAMAMSAAAHAVGHDVTLWARDAQQAAGMQVA RSNQRYLPGLAFPPSLRVQAGDARALADQAELVIIGTPMAALRGMLLLLRDCAAPIAW LCKGFEADTGLMAHEVCAEVAPQLASGAFSGPSFAQEVARGQPSALVAASRHARVRDA LVAAFHGPALRVYASEDIVGVEVGGAVKNVLAIATGLCDGLQLGLNARAALITRGLAE MTRLGLALGARPDTFMGLSGLGDLVLTATGDLSRNRRVGLLLAEGKSLQQAVDSLGHV AEGVYSARTVVQRARAAGVEMPIAECVLALLDGRLRATDAVARLMEREPTVERL" sig_peptide 1042315..1042386 /locus_tag="Alide2_1001" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.756 at residue 24" misc_feature 1042390..1043283 /locus_tag="Alide2_1001" /note="NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated; Region: gpsA; PRK00094" /db_xref="CDD:178859" misc_feature 1042390..1042785 /locus_tag="Alide2_1001" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1042840..1043274 /locus_tag="Alide2_1001" /note="NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479" /db_xref="CDD:116100" gene 1043425..1044159 /locus_tag="Alide2_1002" /db_xref="GeneID:10482026" CDS 1043425..1044159 /locus_tag="Alide2_1002" /inference="similar to AA sequence:KEGG:Pnap_3576" /note="KEGG: pna:Pnap_3576 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386926.1" /db_xref="GI:330823623" /db_xref="GeneID:10482026" /translation="MPYPTLPVVLSAAAVLAACAPMSAQAPGDAGSHAMGFFVTSGNP GRGGDLGGIEGADRYCQALASGVGAGARIWRAYLSTVATVAGPPVNARDRIGTGPWYN AKGVLIARNVEELHGANHVSKQTALTEKGEVLSGRGDAVNMHDILTGSLPDGRASAAA SDTTCGNWTHDGAGSALVGHHDRMGLDDSVAAKSWNSSHASRGCGMDALKATGGAGRL YCFAADTPAVPPAVPSGRAMGGASGY" sig_peptide 1043425..1043496 /locus_tag="Alide2_1002" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.569 at residue 24" gene complement(1044187..1045170) /locus_tag="Alide2_1003" /db_xref="GeneID:10482027" CDS complement(1044187..1045170) /locus_tag="Alide2_1003" /inference="similar to AA sequence:KEGG:BPP0893" /note="KEGG: bpa:BPP0893 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386927.1" /db_xref="GI:330823624" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482027" /translation="MFHSSIAKITGIALGAALVAHAAVAQDQSNTPIKIVIGFPAGGA LDSMSRAMAEKLRTDLGKTVIVDNKPGAGTQIALMTVKRSPADGNTILISPAPPFVSQ PLTYDKLPFDPDKDLVPVALLADTPLVATTSVNSPFSSMREYVDWIKKNPKDTGVGMV TLGGVFHFGLLQLNQQMGLNLTPVAYKGAPPMLTDEIGGVLPVGMDTVASAGELVKAG KIKYLGVPGTERSRLIPGVPTFLEQGVPGFENAASWYAAFVPAGVPKSVVSKLEKTMI DIVQDPEFAEKMVRIGLVTTGRPGAEVARLAKTQREALRPIVEKSGFRVTQ" sig_peptide complement(1045093..1045170) /locus_tag="Alide2_1003" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.960 at residue 26" misc_feature complement(1044199..1045077) /locus_tag="Alide2_1003" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1044205..1045029) /locus_tag="Alide2_1003" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1045202..1045939) /locus_tag="Alide2_1004" /db_xref="GeneID:10482028" CDS complement(1045202..1045939) /locus_tag="Alide2_1004" /inference="protein motif:PFAM:PF01925" /note="PFAM: Protein of unknown function DUF81; KEGG: bpa:BPP0894 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386928.1" /db_xref="GI:330823625" /db_xref="InterPro:IPR002781" /db_xref="GeneID:10482028" /translation="MNELLYPAAVVLLGYVVLGITGFGSALVIVPLLAWRWPLAEVVP LVLLLDVPASLLLGGLNLRHVNFAELRRLLPGMVVGALAGLWLSTQLASRWPLLALGL YVAAVGAQALRTAAPRRRQLAAPWSHAAGGAIGLVEILFGTAGPLVVAWLSRRLPDVL ALRASTPVVITASACSVLLTMGVAGRLSHADLWLRWLVLIAVAAAGVVMGHHWARRVP PELLRKLICALLVVSGLTLVTHAIQMH" misc_feature complement(1045229..1045882) /locus_tag="Alide2_1004" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene complement(1045954..1047480) /locus_tag="Alide2_1005" /db_xref="GeneID:10482029" CDS complement(1045954..1047480) /locus_tag="Alide2_1005" /inference="protein motif:PFAM:PF07364" /note="PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: bbr:BB0988 hypothetical protein" /codon_start=1 /transl_table=11 /product="Microcystin LR degradation protein MlrC" /protein_id="YP_004386929.1" /db_xref="GI:330823626" /db_xref="InterPro:IPR010799" /db_xref="InterPro:IPR015995" /db_xref="GeneID:10482029" /translation="MKFVIALMRHETNTFSPIPTVLGDFRRGTGNGPAYGEAARQACE GTKNAATAYLDMAREMGAEVDFAMYANAVPSGVVAREAFEHLCDAVVRSASQGCDAIL LDLHGAMVADGYPDAEGELLRRLRACTPPGLPIGVALDFHANFSSELIRNATVIAGYC TYPHVDIYETGARVARSIRARLEGRSQPVLLWRRLPMLTHMLRQTPAMQPMKDIMDRA MQAERDGEVCNASVFGGFPLSDIPYAGLSVVIAAERGRLDAGQRLLDELCDLAWSRRA DFVFPSEPVPQAIAHAKTLEQGPVLLIDHGDNCGAGGVTDIMDVLEEMLRQGLEDVVA GPFWDPATVATLFERGVGAEVTVDVGGKTDMPALGLKGRPLRLTGVVERLTDGEYTVT GPMFTGVRQSLGRTAVLRVGTVLVFICERPQEPYDTGVFTHAGVDPAQSRYVLLKSRQ HFRAGFGPFARHVVLVSGPGVCSSDYDLFPFKHLSRPMYPLDADATPAHADGWAPACA " misc_feature complement(1045999..1047480) /locus_tag="Alide2_1005" /note="Uncharacterized conserved protein [Function unknown]; Region: COG5476" /db_xref="CDD:35035" misc_feature complement(1046599..1047480) /locus_tag="Alide2_1005" /note="Protein of unknown function (DUF1485); Region: DUF1485; pfam07364" /db_xref="CDD:148781" misc_feature complement(1046029..1046577) /locus_tag="Alide2_1005" /note="MlrC C-terminus; Region: MlrC_C; pfam07171" /db_xref="CDD:115801" gene complement(1047489..1048481) /locus_tag="Alide2_1006" /db_xref="GeneID:10482030" CDS complement(1047489..1048481) /locus_tag="Alide2_1006" /inference="similar to AA sequence:KEGG:BPP0896" /note="KEGG: bpa:BPP0896 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386930.1" /db_xref="GI:330823627" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482030" /translation="MQRIRRQVAGLALLSCLAPVLGMGAAHAQADWPKRAIKVIVPYP AGGSADAMGRMVANKLGKAFPKVSVVVENIPGGATVPGALATLRDPADGHTLFMASDG TLNINRWLLKDVRYDGDRDFTPVTVLNSYPHWLIINPQGPYKNFDDLVKAIQARPGKV SISVNTIGGAAHLALDNWRRQNGLNFEIVPYRGSPPAVTDLIGGHTDAHMDVVGSSIA HARGGRVLPVAVLQGTPLKEFPKAVAQDPRDPKALVVQSNLSVVMRAGTPQAVLDKIY SVLQSGVKDEDFANTLSMLSLDPVLLEPAKAKAFLQQETQRYGVLVEKSGLEKQ" sig_peptide complement(1048395..1048481) /locus_tag="Alide2_1006" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.950 at residue 29" misc_feature complement(1047495..1048457) /locus_tag="Alide2_1006" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1047501..1048328) /locus_tag="Alide2_1006" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1048598..1049488 /locus_tag="Alide2_1007" /db_xref="GeneID:10482031" CDS 1048598..1049488 /locus_tag="Alide2_1007" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bbr:BB0990 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004386931.1" /db_xref="GI:330823628" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482031" /translation="MDEHRLKCFVAVYEQGSVSAAATRLHMTQPPLSILLRKLEDELG VTLFDRSGHRLAPTATGELFYLRAKALLANLQTMRRELREAEQGARGSVHIGCATAAS LFVMPGVMEDLRSSGLDITVHVQEGETGYMLQRLRERSLDLVISRSEYIAPELETRII MDEPLQVALPPDHPQAGCDRVRLEDLRHDRFLLHRSPLGAGISDMVLRACQQAGVVPN VVYWGGETLPMLLMAQKGLGVAFAPQSFGQLAAAGLPRLVPLAGAQLRTHLNVVWPRQ LVLTPAASRIRDLILERFAP" misc_feature 1048598..1049482 /locus_tag="Alide2_1007" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 1048607..1048783 /locus_tag="Alide2_1007" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1048871..1049467 /locus_tag="Alide2_1007" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature order(1048916..1048921,1048925..1048930,1048937..1048939, 1048949..1048951,1048955..1048975,1049255..1049272, 1049288..1049293,1049297..1049302) /locus_tag="Alide2_1007" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(1049608..1050459) /locus_tag="Alide2_1008" /db_xref="GeneID:10482032" CDS complement(1049608..1050459) /locus_tag="Alide2_1008" /inference="protein motif:TFAM:TIGR00018" /note="KEGG: ajs:Ajs_3500 pantoate--beta-alanine ligase; TIGRFAM: Pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase" /codon_start=1 /transl_table=11 /product="pantoate/beta-alanine ligase" /protein_id="YP_004386932.1" /db_xref="GI:330823629" /db_xref="GO:0004592" /db_xref="InterPro:IPR003721" /db_xref="GeneID:10482032" /translation="MITARTIPELRAALAARPGRPAFVPTMGNLHDGHIALVRQARPL GDVLVTSIFVNRLQFLPHEDFDSYPRTWDADCARLEAAGCDIVFAPRETDLYPSPQTF KLQPDPQLADILEGHFRPGFFTGVCTVVMKLFSAVFFASGGGTAVFGKKDYQQLMVIR RMVEQFALPVQVVAGETERATDGLALSSRNGYLSAGERGQAVQLSEALRALAQAASAP GAPPLAALEQQAMQQLAQQGWAPDYLTVRQRHDLQPPQGAAAPGTLVALGAARLGGTR LIDNLEF" misc_feature complement(1049617..1050459) /locus_tag="Alide2_1008" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(1049617..1050393) /locus_tag="Alide2_1008" /note="pantoate--beta-alanine ligase; Region: panC; TIGR00018" /db_xref="CDD:161666" misc_feature complement(order(1049890..1049901,1050358..1050369)) /locus_tag="Alide2_1008" /note="active site" /db_xref="CDD:173912" misc_feature complement(order(1049896..1049898,1050358..1050360, 1050367..1050369)) /locus_tag="Alide2_1008" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(1050358..1050369) /locus_tag="Alide2_1008" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature complement(1049890..1049901) /locus_tag="Alide2_1008" /note="KMSKS motif; other site" /db_xref="CDD:173912" gene complement(1050471..1051355) /locus_tag="Alide2_1009" /db_xref="GeneID:10482033" CDS complement(1050471..1051355) /locus_tag="Alide2_1009" /EC_number="2.1.2.11" /inference="protein motif:TFAM:TIGR00222" /note="TIGRFAM: Ketopantoate hydroxymethyltransferase; KEGG: dia:Dtpsy_2822 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoate hydroxymethyltransferase" /protein_id="YP_004386933.1" /db_xref="GI:330823630" /db_xref="GO:0003864" /db_xref="InterPro:IPR003700" /db_xref="GeneID:10482033" /translation="MTTAPSPSATPYGTLPPASPLPQRRPISLPRLAQMREAGEKITM LTAYDATFAAVADAAGVECILVGDSLGMVCQGLPSTVGVSLDTMAYHTESVVRGLHRV QGTAWVVADLPFGSYHESREQALKSACRLMQAGAHMVKLEGGGWTAPTVHFLVERGVP VCAHLGLTPQTVHALGGYRVQGKGDQAAQTLRRHALELQDAGAAMLVLEMVPAPLARD LTQALPHCHTIGIGAGSGTAGQVLVMHDMLGVNLGKNPKFVRDFMQDAGSVKGAMEAY VQAVKQGRFPDDQLHAWN" misc_feature complement(1050498..1051271) /locus_tag="Alide2_1009" /note="Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a...; Region: KPHMT-like; cd06557" /db_xref="CDD:119342" misc_feature complement(order(1050546..1050560,1050567..1050569, 1050609..1050614,1050621..1050623,1050744..1050746, 1050828..1050839,1050843..1050848,1050876..1050893, 1050945..1050947,1050957..1050962,1050969..1050971, 1050981..1050983,1051011..1051016,1051065..1051067, 1051074..1051076,1051083..1051088,1051095..1051097, 1051110..1051115,1051125..1051142,1051146..1051148, 1051191..1051193,1051200..1051211,1051266..1051271)) /locus_tag="Alide2_1009" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:119342" misc_feature complement(order(1050627..1050629,1050633..1050635, 1050729..1050731,1050849..1050851,1050864..1050866, 1050936..1050938,1051023..1051025,1051149..1051157, 1051161..1051163,1051218..1051220)) /locus_tag="Alide2_1009" /note="active site" /db_xref="CDD:119342" misc_feature complement(order(1050936..1050938,1051023..1051025, 1051152..1051154)) /locus_tag="Alide2_1009" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:119342" gene complement(1051467..1051616) /locus_tag="Alide2_1010" /pseudo /db_xref="GeneID:10482034" gene 1051674..1052555 /locus_tag="Alide2_1011" /db_xref="GeneID:10482035" CDS 1051674..1052555 /locus_tag="Alide2_1011" /EC_number="2.4.2.19" /inference="protein motif:TFAM:TIGR00078" /note="TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: dia:Dtpsy_2821 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide pyrophosphorylase" /protein_id="YP_004386934.1" /db_xref="GI:330823631" /db_xref="GO:0004514" /db_xref="InterPro:IPR002638" /db_xref="InterPro:IPR004393" /db_xref="InterPro:IPR022412" /db_xref="GeneID:10482035" /translation="MTNLTHPPQGTAHNDDVTTLARVDVARALQEDVGAGDLTAGLID PARRARARILAREAAVICGAPWVEAALRALDPGVRLTWHAAEGQRCAPDQVVLEIEGN ARALLSAERTALNFLQLLSAVATKTRTYADAVAGTRAQIVDTRKTIPGLRLAQKYAVR TGGGVNHRIGLHDAVLIKENHIAAAGGVTAVLRAAEAVAERAKFIEIEVETLEQLAEA LDAGAKMVLLDNMPLPTLREAVRINAGRAILEISGGVTLDGLRALAETGVDRISIGTL TKDVKAIDFSMRLQELA" misc_feature 1051743..1052546 /locus_tag="Alide2_1011" /note="nicotinate-nucleotide pyrophosphorylase; Provisional; Region: PRK06978" /db_xref="CDD:180783" misc_feature 1051746..1052537 /locus_tag="Alide2_1011" /note="Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-...; Region: QPRTase; cd01572" /db_xref="CDD:29619" misc_feature order(1051788..1051793,1052001..1052006,1052016..1052018, 1052106..1052108,1052112..1052114,1052124..1052129, 1052184..1052189,1052199..1052201,1052205..1052207, 1052211..1052216,1052223..1052225,1052256..1052258, 1052505..1052507) /locus_tag="Alide2_1011" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29619" misc_feature order(1052103..1052111,1052172..1052177,1052358..1052360, 1052427..1052432,1052487..1052489,1052493..1052498, 1052505..1052507) /locus_tag="Alide2_1011" /note="active site" /db_xref="CDD:29619" gene 1052777..1053901 /locus_tag="Alide2_1012" /db_xref="GeneID:10482036" CDS 1052777..1053901 /locus_tag="Alide2_1012" /EC_number="2.5.1.72" /inference="protein motif:TFAM:TIGR00550" /note="TIGRFAM: Quinolinate synthetase A; KEGG: dia:Dtpsy_2820 quinolinate synthetase; PFAM: Quinolinate synthetase A" /codon_start=1 /transl_table=11 /product="quinolinate synthetase complex subunit A" /protein_id="YP_004386935.1" /db_xref="GI:330823632" /db_xref="GO:0008987" /db_xref="InterPro:IPR003473" /db_xref="GeneID:10482036" /translation="MNTTAIKDVEYEQPTAGSDGAVCSTKHAWARVPPELSQEERARL KERIRRLLKEKNAVMVSHYYVHPDLQDLAEETGGIVSDSLEMARFGRDHAAQTLVVSG VKFMGETAKILSPEKTVLMPDLDATCSLDLGCPIDQFSAFCDQHPDRTVVVYANTSAA VKARADWLVTSSCALDIVRALKDAGHKILWAPDRHLGAYIEQQTGADMVFWNGACIVH DEFKALELELLKKEHPGAKVLVHPESPAEVVALADAVGSTSAILKAAREMDAKEFIVA TDNGMMHKLRTLNPAKTFYEAPTAGNSATCKSCAHCPWMAMNGLADVARVLETGANAI HVDPALIPRARLPIDRMLAFTAALKSGQPAGALVPHFGAA" misc_feature 1052846..1053844 /locus_tag="Alide2_1012" /note="Quinolinate synthetase A protein; Region: NadA; cl00420" /db_xref="CDD:185987" gene 1053955..1055697 /locus_tag="Alide2_1013" /db_xref="GeneID:10482037" CDS 1053955..1055697 /locus_tag="Alide2_1013" /EC_number="2.6.1.85" /inference="protein motif:TFAM:TIGR00553" /note="TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: ajs:Ajs_3496 para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding, C-terminal; Aminotransferase, class IV" /codon_start=1 /transl_table=11 /product="para-aminobenzoate synthase subunit I" /protein_id="YP_004386936.1" /db_xref="GI:330823633" /db_xref="InterPro:IPR001544" /db_xref="InterPro:IPR005802" /db_xref="InterPro:IPR015890" /db_xref="GeneID:10482037" /translation="MTSNVLIDFADPRESGGARLRFRAAAPRATLVARALHEVRGVLD AVEAAARAGAWVVGQLRYEAAPAFDAALRTHAADGPLAWFAVFDAPQPWDGGLTPGDA AVQWQDGIARPAFDAAIAHIRGAIGAGECYQVNYTAPLTGAWRGGAPALFAALRRAQP GGYAACLDMGDECTLSVSPELFFDWRGGTLLARPMKGTAARGATPGEDAARAAQLRAS PKERAENVMIVDLLRNDLSRIAEPHSVRVPRLFHTEALPTVWQMTSDVVARTRAGTRL ADVFGALFPCGSVTGAPKVRAMRLIAQLEPAPRGVYCGAVGVVRPDGAGGVAATFNVP IRTVALRGARAVCGIGSGITWGSDAAAEWREWEAKRAFVERASEPFDLLETLGLHDGV LRHRAEHLARMAGAAAHFGVPWDAARVQACLHALCAAHPAGPWRVRLLLDAQGLPRAE AFALQPTPEPVVLALAAQPFLHAHSEFTRHKTTRRAHYAAFAPRQGVFDTVLYNEAGE ITESTFGNVAALLDGRWITPPLASGLLPGVGRAVALREGRVAEAVLRVQDVPRVQRWA FVNSLRGWLDARLE" misc_feature 1054132..1055028 /locus_tag="Alide2_1013" /note="chorismate binding enzyme; Region: Chorismate_bind; cl10555" /db_xref="CDD:195988" misc_feature 1055098..1055673 /locus_tag="Alide2_1013" /note="PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate...; Region: PLPDE_IV; cl00224" /db_xref="CDD:197404" misc_feature order(1055101..1055103,1055158..1055160,1055395..1055397, 1055485..1055487,1055566..1055571,1055662..1055664) /locus_tag="Alide2_1013" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:29567" misc_feature order(1055101..1055103,1055179..1055181,1055266..1055268, 1055272..1055274,1055335..1055337,1055401..1055403, 1055413..1055415,1055422..1055424,1055464..1055466) /locus_tag="Alide2_1013" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29567" misc_feature order(1055158..1055160,1055395..1055397,1055485..1055487) /locus_tag="Alide2_1013" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:29567" misc_feature 1055395..1055397 /locus_tag="Alide2_1013" /note="catalytic residue [active]" /db_xref="CDD:29567" gene complement(1055835..1056197) /locus_tag="Alide2_1014" /db_xref="GeneID:10482038" CDS complement(1055835..1056197) /locus_tag="Alide2_1014" /inference="protein motif:PFAM:PF02962" /note="PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: dia:Dtpsy_2818 5-carboxymethyl-2-hydroxymuconate isomerase" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate isomerase" /protein_id="YP_004386937.1" /db_xref="GI:330823634" /db_xref="InterPro:IPR004220" /db_xref="GeneID:10482038" /translation="MPHLTVEYSSNLPGYPEAQALAELNAAVCASPEVLDEADLKTRF VRTTDSFQVGTEAVGRAFVHAQLRLLSGRSPEAKKDLAGRVAGVLRRLTPRPQGLMVQ LSVEIVDMDRPSYVKERL" misc_feature complement(1055856..1056194) /locus_tag="Alide2_1014" /note="5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the...; Region: CHMI; cd00580" /db_xref="CDD:73217" misc_feature complement(order(1055979..1055981,1055988..1055990, 1056075..1056077,1056081..1056083,1056192..1056194)) /locus_tag="Alide2_1014" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:73217" misc_feature complement(order(1055856..1055858,1055874..1055897, 1055928..1055930,1055940..1055942,1055961..1055966, 1055994..1055996,1056006..1056008,1056018..1056020, 1056036..1056053,1056057..1056080,1056084..1056089, 1056123..1056125,1056129..1056131,1056177..1056179, 1056189..1056191)) /locus_tag="Alide2_1014" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:73217" gene complement(1056245..1057819) /locus_tag="Alide2_1015" /db_xref="GeneID:10482039" CDS complement(1056245..1057819) /locus_tag="Alide2_1015" /EC_number="1.4.3.16" /inference="protein motif:TFAM:TIGR00551" /note="TIGRFAM: L-aspartate oxidase; KEGG: vei:Veis_1080 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal" /codon_start=1 /transl_table=11 /product="L-aspartate oxidase" /protein_id="YP_004386938.1" /db_xref="GI:330823635" /db_xref="GO:0008734" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004112" /db_xref="InterPro:IPR005288" /db_xref="GeneID:10482039" /translation="MASHDFDVLIVGSGLAGLSAALHLAPTHRVAVITKRELQEGSSR WAQGGIAAVLADDDSFAAHIEDTLVAGAGLCDLATTRFVVENAPEAIGWLRALGVPFT LEGDDLHLTREGGHSARRIVHATDATGAAVQETLIDVVRATPGITVFEHHTLVDLITS RKLGLAGQRCLGLYALDEASDTVVTFRAPHTVLATGGAGKVYLYTTNPDTATGDGIAA AWRAGCRVANMEFIQFHPTGLYHPHAKSFLISEAVRGEGGRLLLPDGTRFMPRHDARA ELAPRDVVARAIDFEMKKHGLDCVHLDISHQSPEFLRAHFPNILAYCAELGIDITREP IPVVPTAHFTCGGVLTDLAARTDLPGLFAVGEVAYTGLHGANRLASNSLLECMVFARA AAHAVAAATPAPVPDLPHWDDSRVRDADESVVISHNWDELRRFMWDYVGIVRTNKRLE RAAHRIALLQGEIQEFYAHFHVTRDLLELRNLVQVADLIIQSAQMRHESRGLHFSRDW PDMAAPAAPTILVPMR" misc_feature complement(1056248..1057819) /locus_tag="Alide2_1015" /note="L-aspartate oxidase; Provisional; Region: PRK09077" /db_xref="CDD:181640" misc_feature complement(1056665..1057801) /locus_tag="Alide2_1015" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(<1056290..1056535) /locus_tag="Alide2_1015" /note="domain; Region: Succ_DH_flav_C; pfam02910" /db_xref="CDD:190472" gene complement(1057911..1058780) /locus_tag="Alide2_1016" /db_xref="GeneID:10482040" CDS complement(1057911..1058780) /locus_tag="Alide2_1016" /inference="protein motif:PFAM:PF00165" /note="KEGG: reh:H16_A1911 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004386939.1" /db_xref="GI:330823636" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR018060" /db_xref="GeneID:10482040" /translation="MKPLDAPLAGVDRLSALLERFRVHAHLFHAGPLCGVTHFAAAPG RAFLHVLRRGQMEVTHRPRSGAPRRLRLSEPTLLLYPRPLEHDFHNAPQEGCDFVCAT LDFDGGPRHPLVQALPAFVALPVAGVAGIGQTLDLLFAETERVRCGQRLLASRLFEVL LLQVLRWLLDHPGAGGVQAGLLAGLAHPGLARALTQLHERPGHGWTLAAMAQAAGMSR SAFAAEFRATLGTTPGAYLLAWRVSLAQALMRQGLQIQQISDQLGYASPAAFSRAFAQ AVGASPRGWLKAQ" misc_feature complement(1058319..1058747) /locus_tag="Alide2_1016" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" misc_feature complement(1058067..1058192) /locus_tag="Alide2_1016" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" misc_feature complement(1057932..1058171) /locus_tag="Alide2_1016" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature complement(1057920..1058030) /locus_tag="Alide2_1016" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 1058876..1059430 /locus_tag="Alide2_1017" /db_xref="GeneID:10482041" CDS 1058876..1059430 /locus_tag="Alide2_1017" /inference="protein motif:TFAM:TIGR01926" /note="KEGG: axy:AXYL_05773 carboxymuconolactone decarboxylase family protein 5; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase" /codon_start=1 /transl_table=11 /product="peroxidase-like protein" /protein_id="YP_004386940.1" /db_xref="GI:330823637" /db_xref="InterPro:IPR003779" /db_xref="InterPro:IPR004675" /db_xref="InterPro:IPR010195" /db_xref="GeneID:10482041" /translation="MNRVPLIDRADTTAERKALLDEIHGAFGATPNMFRAVANSPAAL RSMWGSFGALGGGKLGARLGEQIAVAVADRNACAYCLAAHTALGLKAGASAEEMAAAQ AGQSGDPRTQAALRFALKVVGERAQVGSADVQALRDAGFSDEEVVEILAHVALNLFTN YVNVALAVPVDFPAVRLRQGQTGV" misc_feature 1058882..1059388 /locus_tag="Alide2_1017" /note="uncharacterized peroxidase-related enzyme; Region: peroxid_rel; TIGR01926" /db_xref="CDD:130981" misc_feature 1058903..1059364 /locus_tag="Alide2_1017" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene complement(1059415..1060251) /locus_tag="Alide2_1018" /db_xref="GeneID:10482042" CDS complement(1059415..1060251) /locus_tag="Alide2_1018" /inference="protein motif:PFAM:PF02616" /note="PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: ajs:Ajs_3492 condensin subunit ScpA" /codon_start=1 /transl_table=11 /product="chromosome segregation and condensation protein ScpA" /protein_id="YP_004386941.1" /db_xref="GI:330823638" /db_xref="InterPro:IPR003768" /db_xref="GeneID:10482042" /translation="MTSAVDLPPPDAAMPEVVDQVALARLYGEPLFALPQDLYIPPDA LEVFLEAFEGPLDLLLYLIRKQNFNILDIPMVDVTRQYLGYVDEVRSRNLELAAEYLL MAAMLIEIKSRMLLPPRRQEGSAEPEDPRAELVRRLLEYERIKLAALRLNQVPQYGRD FIRAQVAIEQSLQPRFPDVDVAELQQAWRDILKRATLVQHHRITREELSVREYMSHVL KALQGRRFVPFEDLFQPEKGGTVLVVTFIALLELAKETLIEITQAEAFAPIYVRLAYT PV" misc_feature complement(1059436..1060119) /locus_tag="Alide2_1018" /note="ScpA/B protein; Region: ScpA_ScpB; cl00598" /db_xref="CDD:186098" gene complement(1060317..1060532) /locus_tag="Alide2_1019" /db_xref="GeneID:10482043" CDS complement(1060317..1060532) /locus_tag="Alide2_1019" /inference="protein motif:PFAM:PF11943" /note="PFAM: Protein of unknown function DUF3460; KEGG: ajs:Ajs_3491 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386942.1" /db_xref="GI:330823639" /db_xref="InterPro:IPR021853" /db_xref="GeneID:10482043" /translation="MSIFRRPDYQSEVTQFIEQLKTQKPELDTQQQAGRALLWDKNVD RELWQEYRAGRVKQKPYVYYSYSDKQA" misc_feature complement(1060338..1060514) /locus_tag="Alide2_1019" /note="Protein of unknown function (DUF3460); Region: DUF3460; pfam11943" /db_xref="CDD:152378" gene 1060578..1061078 /locus_tag="Alide2_1020" /db_xref="GeneID:10482044" CDS 1060578..1061078 /locus_tag="Alide2_1020" /inference="similar to AA sequence:KEGG:Daci_1840" /note="KEGG: dac:Daci_1840 putative lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386943.1" /db_xref="GI:330823640" /db_xref="GeneID:10482044" /translation="MNPLTRMAGALAAGALTLLSLAGCDDQRIRELEEDVSTEADVRA RFGEPETIWPESDGGHTLEYNRQPAGHRNYMITIGPGGKMTALRQVLAPHNFERVRPG MEEEAVRRLLGKPAKRTPYALKQETDWDWNWIDPPSREMVFTATFGPDGRVKRTGSVE KLPDGR" sig_peptide 1060578..1060646 /locus_tag="Alide2_1020" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.662 at residue 23" gene complement(1061085..1062737) /locus_tag="Alide2_1021" /db_xref="GeneID:10482045" CDS complement(1061085..1062737) /locus_tag="Alide2_1021" /EC_number="2.2.1.6" /inference="protein motif:PRIAM:2.2.1.6" /note="KEGG: ajs:Ajs_3488 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain" /codon_start=1 /transl_table=11 /product="acetolactate synthase" /protein_id="YP_004386944.1" /db_xref="GI:330823641" /db_xref="InterPro:IPR011766" /db_xref="InterPro:IPR012001" /db_xref="GeneID:10482045" /translation="MNGAQALLQTLADAGVEVCFTNPGTSEMHFVAALDTEPRMRAVL ALFEGVATGAADGYARMAGKPAATLLHLGCGLGNGLANLHNARKGKVPVVNIVGDHAT YHTRYDAQLQSDIETVARNVSPGFVRTAQSTAALGRDAADAIAAARGLPGQVATLILP ADVSWGEGGQPCPPPPPPTPAAASDEAVQAAAQAIRSGEKTIVLLGGHALREGALRTA ARIAAHSGAQLLAEVFPTRMERGAGLPAVERVAYLAELAGVQLAGARHLVLVDAKSPV SFFAYPGKASDLVPEGCTVHTLCSPAQDAAASLDKLAAALGATAEPPLAPARRPERPR GPLTAPKVCKAVGHLLPENAIVIDEAITSGLMLGAMTAGCPRHDLLTLTGGAIGQGLP NAVGAAIACPDRPVLALIGDGTAMYTIQALWTMAREKLHVVSVIFNNASYSVLNVELE RVGADEAGSKAKSQLDLKGPVLNFAQLAQGMGVHAVRARTAEDFCQALEYALAQPGPH LIEALVPEALSGARRRVLPWLLRSLPGLPQPVARALKRRIAP" misc_feature complement(1061196..1062737) /locus_tag="Alide2_1021" /note="hypothetical protein; Validated; Region: PRK07586" /db_xref="CDD:181051" misc_feature complement(<1062369..1062725) /locus_tag="Alide2_1021" /note="Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035" /db_xref="CDD:132918" misc_feature complement(order(1062471..1062476,1062483..1062485, 1062495..1062497,1062516..1062518,1062552..1062560, 1062564..1062569,1062576..1062581,1062588..1062590, 1062597..1062617,1062642..1062644,1062654..1062656, 1062666..1062671,1062684..1062686)) /locus_tag="Alide2_1021" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature complement(order(1062375..1062377,1062384..1062386, 1062486..1062488,1062495..1062500,1062504..1062509, 1062516..1062518,1062591..1062593,1062597..1062608, 1062612..1062614,1062642..1062644,1062654..1062656, 1062663..1062671)) /locus_tag="Alide2_1021" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature complement(order(1062504..1062506,1062516..1062518, 1062594..1062596,1062669..1062671)) /locus_tag="Alide2_1021" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132918" misc_feature complement(1061196..1061726) /locus_tag="Alide2_1021" /note="TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This...; Region: TPP_BFDC; cd02002" /db_xref="CDD:48165" misc_feature complement(order(1061406..1061411,1061415..1061417, 1061421..1061423,1061487..1061489,1061496..1061507, 1061577..1061579,1061583..1061585,1061652..1061657)) /locus_tag="Alide2_1021" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48165" misc_feature complement(order(1061295..1061300,1061319..1061324, 1061328..1061330,1061340..1061345,1061412..1061414, 1061457..1061459,1061469..1061471,1061487..1061492, 1061589..1061591)) /locus_tag="Alide2_1021" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48165" gene complement(1062806..1063957) /locus_tag="Alide2_1022" /db_xref="GeneID:10482046" CDS complement(1062806..1063957) /locus_tag="Alide2_1022" /EC_number="1.1.2.3" /inference="protein motif:PRIAM:1.1.2.3" /note="KEGG: ajs:Ajs_3487 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase" /codon_start=1 /transl_table=11 /product="L-lactate dehydrogenase (cytochrome)" /protein_id="YP_004386945.1" /db_xref="GI:330823642" /db_xref="InterPro:IPR000262" /db_xref="GeneID:10482046" /translation="MSLHYPAAPQDWRRLAARRLPRFLFDYIDGGANDERTLAANVDD LAALRLRQRVLVDVAQVDTRATLAGQPCALPLALAPIGLAGMAARRGEAQAARAAHAA GVPFTLSTVSICPLAEVAAASVPPWFQLYMLRDRGAVRALLDDAWAAGCRTLVFTVDL PLPGMRLRDIRHGMAASGARPALLRAAQVLARPGWVWNVALRGKPLRFGNLTAQVPGA RDLNAFKAWVDAQFDPGVTWKDIEWLRGQWKGRLLLKGILDVEDARAAVAVGAEGIVV SNHGGRQLDSVASTAAKLPAIAQAVGAQAEVLVDSGVRGGVDVFKALALGARGVLVGR PWVWALAAQGEAGVRTLLAQWQRELLLAMTLAGVTRTADIGPRHLDTDS" misc_feature complement(1062821..1063882) /locus_tag="Alide2_1022" /note="L-lactate dehydrogenase; Provisional; Region: lldD; PRK11197" /db_xref="CDD:183033" misc_feature complement(<1063454..1063882) /locus_tag="Alide2_1022" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature complement(1062821..>1063648) /locus_tag="Alide2_1022" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature complement(order(1062956..1062961,1063022..1063027)) /locus_tag="Alide2_1022" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73384" gene complement(1063954..1065564) /locus_tag="Alide2_1023" /db_xref="GeneID:10482047" CDS complement(1063954..1065564) /locus_tag="Alide2_1023" /inference="protein motif:PFAM:PF00890" /note="PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: dia:Dtpsy_2809 fumarate reductase/succinate dehydrogenase flavoprotein domain protein" /codon_start=1 /transl_table=11 /product="fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein" /protein_id="YP_004386946.1" /db_xref="GI:330823643" /db_xref="GO:0009055" /db_xref="GO:0016491" /db_xref="InterPro:IPR003953" /db_xref="GeneID:10482047" /translation="MAPHSSDALVIGGGLAGIVTALELLRAGRRVTLVDRDTPERFGG LALWAFGGMALVGTPLQAKMKIPDTPERALADWLRFGELGPGDHWPRAWARYYVEHSR AQVHDWLVQEGVKFMPAVNWVERGRHGEGNSLPRYHIVWGTARELTRRMVAALRAADA GRLTLLHGHRVTGLDHESGRIAGAVAVNETTGEEVRLHAPVVVLAMGGINGGHEEARA NWPKDRPRPAAMLNGAHPFADGRLHRHAAERLGARITHAGEMWNYAAGFPHPFPHFDG HGLSAIPCKSALWLNHRGERIGPEPLVTGFDTHWLCERVAAQEKPWTWHLLNWRIAAK EFAISGAEHNQRIRDRQFPQFVKETLLGNHRLVRQMQRQSPHFLVDDTLAGLAAKMNA LTASLDVRPQVLQATADAFDANFAHGSKLHNDDQIRRILHARQWGPDKLRTCAPAPLQ QPGAGPFIAIQMQLITRKSLGGLQTDLQSRVQGGAGQPIAGLYCVGEAAGFGGGGANG KRSLEGTFLPGCILTARAAARSITGRAA" misc_feature complement(1063972..1065546) /locus_tag="Alide2_1023" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 1065659..1066666 /locus_tag="Alide2_1024" /db_xref="GeneID:10482048" CDS 1065659..1066666 /locus_tag="Alide2_1024" /inference="protein motif:PFAM:PF00165" /note="KEGG: ajs:Ajs_3485 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; Helix-turn-helix, Fis-type; SMART: Helix-turn-helix, AraC type, DNA binding domain" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="YP_004386947.1" /db_xref="GI:330823644" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR018060" /db_xref="GeneID:10482048" /translation="MTLQASVSMSWVNTVLAAAERAGVPRERLLAQAGIAPAELARER WPIDHITRLWRAAVHCTQDAGFGLKAGALVGPGSFNVVSYLLQSAPSLRGAISVVQQY QRLISDGGRFQMIAGARAGWVVYHPRQGALAFSPHQIEAVLAAVVAFSRWVTGQAVRP LQVQFSQPRVGPLAGYREAFACPVAFEQAFSGVLLDNALLDAPLPQADAQLARLHHQY AAQRLAVLHEGGALAQELRAWIAAALLGRVPTRAEAAQALGLSERTLARRMRAQRLSF SALLDAVRREAALQAVAERGRPLAEIGQALGYAEPSVFWRAFRRWTGQTPAQWRGAAV H" misc_feature 1065725..1066237 /locus_tag="Alide2_1024" /note="Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625" /db_xref="CDD:193103" misc_feature 1066403..1066648 /locus_tag="Alide2_1024" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature 1066523..1066648 /locus_tag="Alide2_1024" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene complement(1066752..1067468) /locus_tag="Alide2_1025" /db_xref="GeneID:10482049" CDS complement(1066752..1067468) /locus_tag="Alide2_1025" /inference="protein motif:PFAM:PF00117" /note="PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: tmz:Tmz1t_0983 glutamine amidotransferase" /codon_start=1 /transl_table=11 /product="glutamine amidotransferase class-I" /protein_id="YP_004386948.1" /db_xref="GI:330823645" /db_xref="GO:0003824" /db_xref="InterPro:IPR000991" /db_xref="GeneID:10482049" /translation="MTHTAIAIRHLHFEDLGTLEPLLQSRGYTVRYVDAPTEDLHAPH LADADLLVVLGGPIGAFDEAAYPFLADELALIQQRLHRQQPLLGICLGAQLIARALGA PVAPMGVKEIGFAPLALTAAGRDSPLAALDGVPVLHWHGDQFGIPPGAQCLAGTATCP HQGFALGPQVLGLQCHLEADPRAIERWLVGHACELAQAGVDPRTLRAEARALQARLPA AAGTVFTRWLDGLELLLPMQ" misc_feature complement(1066872..1067462) /locus_tag="Alide2_1025" /note="GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]; Region: GuaA; COG0518" /db_xref="CDD:30864" misc_feature complement(1066905..1067447) /locus_tag="Alide2_1025" /note="Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; Region: GATase1_1; cd01741" /db_xref="CDD:153212" misc_feature complement(order(1066935..1066937,1066941..1066943, 1067199..1067201)) /locus_tag="Alide2_1025" /note="catalytic triad [active]" /db_xref="CDD:153212" gene complement(1067465..1068259) /locus_tag="Alide2_1026" /db_xref="GeneID:10482050" CDS complement(1067465..1068259) /locus_tag="Alide2_1026" /inference="protein motif:TFAM:TIGR00044" /note="KEGG: dac:Daci_3709 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386949.1" /db_xref="GI:330823646" /db_xref="InterPro:IPR001608" /db_xref="InterPro:IPR011078" /db_xref="GeneID:10482050" /translation="MTATRHDQHGRYPQAATLQDFQRHLATVQARIAAACQRAGRDPA SVRLLPVSKTQPEARVRLAHAAGCRLLGENKPQEALGKWQATQDLPGLRWSVIGHLQT NKARLVARFASEFQALDSLRVAEALERRLQAEGRALDVFVQVNTSGEASKYGLLPREV AAFLRALPAFPALRVRGLMTLALFSSDAARVRRCFVLLRTLRDRLRQEAPAGITLEEL SMGMSGDFEIAIEEGATVVRVGQALFGARALPDGHYWPSSCEETPP" misc_feature complement(1067525..1068187) /locus_tag="Alide2_1026" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins; Region: PLPDE_III_YBL036c_like; cd00635" /db_xref="CDD:143483" misc_feature complement(order(1067537..1067542,1067546..1067548, 1067594..1067596,1067717..1067719,1067969..1067971, 1068038..1068040,1068101..1068103,1068107..1068109)) /locus_tag="Alide2_1026" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143483" misc_feature complement(1068101..1068103) /locus_tag="Alide2_1026" /note="catalytic residue [active]" /db_xref="CDD:143483" gene complement(1068256..1069473) /locus_tag="Alide2_1027" /db_xref="GeneID:10482051" CDS complement(1068256..1069473) /locus_tag="Alide2_1027" /inference="protein motif:TFAM:TIGR00843" /note="KEGG: dac:Daci_3710 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein" /codon_start=1 /transl_table=11 /product="benzoate transporter" /protein_id="YP_004386950.1" /db_xref="GI:330823647" /db_xref="InterPro:IPR004711" /db_xref="GeneID:10482051" /translation="MQHAPPSPLRPRDLVHPIVAGLVSVIVNYGGTFILVFQAAQVAG LGPELTASWVWSISVGVGVTGVLLSWMTRAPVITAWSTPAAAFLVTALATTPYAEAVG AYLVSAAAFVALGLSGGFDRVIRWIPPGVAAGLLAGILLQFGIRAFGGMGVDPLLAGL LVLAYVLLRRVAARWAVVGILLLGLGFLLVQGRVDLSSLRLQLAAPVFTMPAFSLNAL LSVALPLFLITLSGQYMPGMLVLRGDGYATSASPIVAVTGLGSLLMAPFGAHAFNLAA ITAAICTGREAHEDPSKRWVAGIAAGVCYILVGVFGVTLAAVFMALPATFITMLAGLA LLGTIGTSLATALADAKARESALITFLAAAANITLLGIGGAFWGLVVGLAAHAVLHGR LPRPALAGKGAVS" misc_feature complement(1068289..1069425) /locus_tag="Alide2_1027" /note="Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]; Region: BenE; COG3135" /db_xref="CDD:32949" misc_feature complement(1068310..1069422) /locus_tag="Alide2_1027" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" gene 1069563..1071035 /locus_tag="Alide2_1028" /db_xref="GeneID:10482052" CDS 1069563..1071035 /locus_tag="Alide2_1028" /inference="protein motif:PFAM:PF00392" /note="KEGG: tmz:Tmz1t_0986 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator with aminotransferase domain" /protein_id="YP_004386951.1" /db_xref="GI:330823648" /db_xref="GO:0003700" /db_xref="GO:0030170" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10482052" /translation="MFKHAQLESVKAWLGDPAHGALPLHARVQRALRQLILEGALGGG QPLPASRALARSLGVSRDTVEAAYGQLHAEGFIERRVGSGSFVSPRAQRLGAQARRPA APAGAPRLSQRGEALYRGGGVRDFLVPRPFAPGVPDTRAFPLATWERLQRQVLKEHGA RALLHSPPQGMEPLRRAIADYVNLERGARATPERVLVLTSSQQALALCATVLLDAGER ICVEDPLYQGARRAFEAAGLACVPVPVDGGGMQVQHLDGAASPARAVYLTPSHQYPTG ATLALERRLAVVDWAQRHQAWIIEDDYDSEFHYAGKPTACVQGLDAHERTLYIGTFSK SLFPGLRIGYLVLPPQLVAPMAVARTLLDGHSAPIAQLTLARFIEGGHFGAHVRAMRG LYAARRDVLARLVREHLAAWVQPRVPAGGMQMPCVFTCDLPERAAVDAARRAGIDLQG LSALYAAEPAEAGFLMGFAAYAPQEMETAVKALAGVLRRL" misc_feature 1069620..1071032 /locus_tag="Alide2_1028" /note="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:31361" misc_feature 1069629..1069826 /locus_tag="Alide2_1028" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(1069629..1069631,1069635..1069637,1069704..1069706, 1069710..1069715,1069737..1069751,1069755..1069760, 1069767..1069769,1069797..1069802,1069806..1069817) /locus_tag="Alide2_1028" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 1069953..1071014 /locus_tag="Alide2_1028" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(1070160..1070168,1070238..1070240,1070379..1070381, 1070472..1070474,1070553..1070555,1070559..1070564, 1070583..1070585) /locus_tag="Alide2_1028" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(1070169..1070171,1070268..1070270,1070451..1070453, 1070577..1070585,1070670..1070672,1070679..1070681) /locus_tag="Alide2_1028" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 1070562..1070564 /locus_tag="Alide2_1028" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(1071209..1071436) /locus_tag="Alide2_1029" /db_xref="GeneID:10482053" CDS complement(1071209..1071436) /locus_tag="Alide2_1029" /inference="similar to AA sequence:KEGG:Daci_1842" /note="KEGG: dac:Daci_1842 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386952.1" /db_xref="GI:330823649" /db_xref="GeneID:10482053" /translation="MRRYLLPMGSCAMLLQLPGCTVVSVAGTAVSVTASAVGLAADAA IGGARIVGKGVGKAADALASDDGATANDASR" sig_peptide complement(1071356..1071436) /locus_tag="Alide2_1029" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.354 at residue 27" gene complement(1071453..1073522) /locus_tag="Alide2_1030" /db_xref="GeneID:10482054" CDS complement(1071453..1073522) /locus_tag="Alide2_1030" /EC_number="6.1.1.10" /inference="protein motif:TFAM:TIGR00398" /note="TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; KEGG: dia:Dtpsy_2806 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain" /codon_start=1 /transl_table=11 /product="methionyl-tRNA synthetase" /protein_id="YP_004386953.1" /db_xref="GI:330823650" /db_xref="GO:0000166" /db_xref="GO:0004825" /db_xref="GO:0005524" /db_xref="InterPro:IPR002547" /db_xref="InterPro:IPR004495" /db_xref="InterPro:IPR014758" /db_xref="InterPro:IPR015413" /db_xref="GeneID:10482054" /translation="MTARKIFVTTALPYANGNFHIGHIMEYIQADTWVRAQRMQGNAV DFVGADDAHGAPIMIAAEKAGKTPQQFVADIAAGRKQYLDGFHIAFDNWHSTDAPENH ALAQQIYLDLKANGLIETRTIEQFFDPEKNMFLPDRFIKGECPRCHAKDQYGDNCEVC GAVYAPTELINPYSALSGAKPQLKTSEHFFFKLSDPRCVEFLKEWTQDGVHVQPEVAA KIKEWFGTRTNPDGSTSSGLDDWDISRDAPYFGIEIPDAPGKYFYVWLDAPIGYLASL KNLLARRGQDYAAYMADPALEQYHFIGKDIITFHTLFWPAMLKFSGRKTPTKICVHGF MTVNNGEKMSKSRGTGLDPLKYLSLGMNPEWLRYYLGAKLNGRNEDIDFNPEDFMARV NADLIGKYVNIASRAAGFITKRFGGKLGTVSEDGQALLAQLRAHKDAIVAAYEARDTA RAVRETMLLCDRVNAYVDANKPWELAKKEGMEARLQDVCSTCIEAFRILTIYLKPILP QVAADVAAFLIVPPEQFDGVDRPLGAGHQIGQYQHLMQRVEDRQLDALFALPAPAAEE AILPGGEAIAPTITIDDFAKIDLRIAKIVECKAVEGSTKLLQLTLDVGEGRTRNVFSG VASMYKPEQLEGKLTVVVANLAPRKMKFGVSEGMVLAASHADEKAHPGIYVLEPFPGA QPGMRIH" misc_feature complement(1071456..1073513) /locus_tag="Alide2_1030" /note="methionyl-tRNA synthetase; Reviewed; Region: metG; PRK00133" /db_xref="CDD:178889" misc_feature complement(1072374..1073510) /locus_tag="Alide2_1030" /note="catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814" /db_xref="CDD:173907" misc_feature complement(order(1072593..1072595,1072605..1072607, 1072707..1072709,1072716..1072721,1072728..1072730, 1073370..1073372,1073481..1073483,1073487..1073492)) /locus_tag="Alide2_1030" /note="active site" /db_xref="CDD:173907" misc_feature complement(1073454..1073465) /locus_tag="Alide2_1030" /note="HIGH motif; other site" /db_xref="CDD:173907" misc_feature complement(1072485..1072499) /locus_tag="Alide2_1030" /note="KMSKS motif; other site" /db_xref="CDD:173907" misc_feature complement(1071969..1072367) /locus_tag="Alide2_1030" /note="Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957" /db_xref="CDD:153411" misc_feature complement(order(1072104..1072106,1072119..1072124, 1072128..1072133,1072293..1072298,1072305..1072310, 1072317..1072322,1072329..1072334,1072341..1072346, 1072365..1072367)) /locus_tag="Alide2_1030" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153411" misc_feature complement(order(1072104..1072106,1072122..1072124, 1072293..1072298,1072305..1072310,1072317..1072322, 1072329..1072334,1072344..1072346)) /locus_tag="Alide2_1030" /note="anticodon binding site; other site" /db_xref="CDD:153411" misc_feature complement(1071456..1071788) /locus_tag="Alide2_1030" /note="tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine...; Region: tRNA_bind_EcMetRS_like; cd02800" /db_xref="CDD:48402" misc_feature complement(order(1071456..1071467,1071477..1071479, 1071486..1071488,1071492..1071494,1071498..1071500, 1071531..1071542,1071576..1071578,1071585..1071593, 1071639..1071641,1071783..1071785)) /locus_tag="Alide2_1030" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48402" misc_feature complement(order(1071549..1071551,1071558..1071560, 1071579..1071581,1071591..1071593,1071669..1071671, 1071708..1071710)) /locus_tag="Alide2_1030" /note="putative tRNA-binding site [nucleotide binding]; other site" /db_xref="CDD:48402" gene complement(1073602..1074843) /locus_tag="Alide2_1031" /db_xref="GeneID:10482055" CDS complement(1073602..1074843) /locus_tag="Alide2_1031" /inference="protein motif:PFAM:PF01734" /note="PFAM: Patatin/Phospholipase A2-related; KEGG: dia:Dtpsy_2805 patatin" /codon_start=1 /transl_table=11 /product="Patatin" /protein_id="YP_004386954.1" /db_xref="GI:330823651" /db_xref="InterPro:IPR002641" /db_xref="GeneID:10482055" /translation="MAPPAAASPHADTALVLTGGGARAAYQVGVLQAIAAVRAACGER RGPAPFAILTGTSAGAINAAALACGADQFDHTVRRIARVWASFHAGQIYHADWLNVMR QGARWLTLLSLGWALTRWRRTHPHSLLNNAPLAQLLTQLVPLQRVPHLIRTGHLRALA VTASSYNSGQHVAFFDAGDAQRPWAHSLRKSARGPITHTHLLASSAIPLVFPAAPLSI DGHMEYFGDGSMRQTAPLAPAIHLGAQRLMVVGTSRSYEPPPPCAAGTRQPYPPLAVV AGHALSNIFLDALATDIEHVGHVNRILSLLTPEERSRSPLRPLELLVLVPSQSLDEVA ARHVCDLPRTIRALLSALGVQADGRDGSDGALASYLLFERGYTRALMALGRSDTLARR SEICAFFGWHDRGNPVRLPCY" misc_feature complement(1074124..1074801) /locus_tag="Alide2_1031" /note="Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396" /db_xref="CDD:196212" misc_feature complement(<1074082..>1074258) /locus_tag="Alide2_1031" /note="Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396" /db_xref="CDD:196212" gene complement(1074868..1075443) /locus_tag="Alide2_1032" /db_xref="GeneID:10482056" CDS complement(1074868..1075443) /locus_tag="Alide2_1032" /inference="protein motif:PFAM:PF04471" /note="PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: dia:Dtpsy_2804 restriction endonuclease" /codon_start=1 /transl_table=11 /product="restriction endonuclease" /protein_id="YP_004386955.1" /db_xref="GI:330823652" /db_xref="GO:0003677" /db_xref="GO:0004519" /db_xref="InterPro:IPR007560" /db_xref="GeneID:10482056" /translation="MAPNSGFAILLRSPWWVSFAIAAAIVLACGALLPAHIAPFAAVG AVPIAVVGCIAAWRQWRAPGAARVQAALQAAGAMPWREFADSLERAWRAEGQQVQRTD GRSSDLRITKDGKTVLVAARRWKAASHGVEPLRELQAAVQREGARAGVYVALSGTVSE NARSFARDNGLVLLEGDALAALLLKAGAKDT" sig_peptide complement(1075309..1075443) /locus_tag="Alide2_1032" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.877) with cleavage site probability 0.654 at residue 45" misc_feature complement(1074946..1075185) /locus_tag="Alide2_1032" /note="Restriction endonuclease; Region: Mrr_cat; cl00747" /db_xref="CDD:153969" gene complement(1075630..1076679) /locus_tag="Alide2_1033" /db_xref="GeneID:10482057" CDS complement(1075630..1076679) /locus_tag="Alide2_1033" /inference="protein motif:TFAM:TIGR03167" /note="KEGG: dia:Dtpsy_2803 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese-like" /codon_start=1 /transl_table=11 /product="tRNA 2-selenouridine synthase" /protein_id="YP_004386956.1" /db_xref="GI:330823653" /db_xref="GO:0008430" /db_xref="GO:0016786" /db_xref="InterPro:IPR001763" /db_xref="InterPro:IPR017582" /db_xref="GeneID:10482057" /translation="MSHHRPIRPADRHAFDTIIDARSPAEFAEDHIPGAINCPVLDDE ERAIVGTLYVQQGAFEARRVGGAFVAANLARHLRERFADKPQGWRPLVYCWRGGMRSG SMVQWLRLVGWDAQQLAGGYKAFRRHVMDQIEALVPQADLRVLVGATGSAKTRVLQQL AAQGAQVLDLEHCARHKGSLLGALPGVAQPSQKNFETQIATVLETLDLSRPLYVEGES ARIGRLSVPVPLVQRLRAAACIEIEAGPEERLSYLLRDYAYLGDDPEALAQRLGVLVE LHSKETVQRWQAWAHTGQLAPLFEELMRLHYDPHYGRSHARNFTHWEARRRVGAPSLS PEGIAGVARAVLALR" misc_feature complement(1075690..1076652) /locus_tag="Alide2_1033" /note="tRNA 2-selenouridine synthase; Provisional; Region: PRK11784" /db_xref="CDD:183313" misc_feature complement(1076293..1076646) /locus_tag="Alide2_1033" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125" /db_xref="CDD:193666" misc_feature complement(1076398..1076400) /locus_tag="Alide2_1033" /note="active site residue [active]" /db_xref="CDD:29073" gene 1076738..1077799 /locus_tag="Alide2_1034" /db_xref="GeneID:10482058" CDS 1076738..1077799 /locus_tag="Alide2_1034" /inference="protein motif:HAMAP:MF_00625" /note="TIGRFAM: Selenide water dikinase; HAMAP: Selenide, water dikinase, class I; KEGG: ajs:Ajs_3479 selenophosphate synthase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal" /codon_start=1 /transl_table=11 /product="Selenide, water dikinase" /protein_id="YP_004386957.1" /db_xref="GI:330823654" /db_xref="InterPro:IPR000728" /db_xref="InterPro:IPR004536" /db_xref="InterPro:IPR010918" /db_xref="InterPro:IPR023061" /db_xref="GeneID:10482058" /translation="MNASPAPDSPRLTSLSHGGGCGCKIAPGVLSQILQQGGAGAVMP PELLVGIETADDAAVYRLNDSQALVATTDFFMPIVDDPYEFGRIAATNALSDVYAMGG RPIMALALVAMPVSRLPLDVIGAIIRGGQDVCRAAGIPIAGGHTIDSVEPIYGLVAMG LVHPDRVRRNAGARPGDVLVLGKPLGVGVYSAALKKEQLGDAHYREMIASTTLLNTPG PLLAALPGVHAITDVTGFGLAGHALEMARGAGVTVAVDWARVPLLPGVAELAAAGFVT GASGRNWAGYGADVVLAHGLPATAQALATDPQTSGGLLVACAPGSVDEVLAVFAREGF ARAAVIGGVQAGPARLELR" misc_feature 1076750..1077796 /locus_tag="Alide2_1034" /note="selenophosphate synthetase; Provisional; Region: PRK00943" /db_xref="CDD:179176" misc_feature 1076771..1077766 /locus_tag="Alide2_1034" /note="Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The...; Region: SelD; cd02195" /db_xref="CDD:100031" misc_feature order(1076936..1076947,1076951..1076953,1076957..1076959, 1077023..1077025,1077053..1077055,1077062..1077064, 1077071..1077073,1077170..1077172,1077191..1077196, 1077206..1077208,1077467..1077469) /locus_tag="Alide2_1034" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100031" misc_feature order(1077011..1077013,1077023..1077025,1077164..1077172) /locus_tag="Alide2_1034" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:100031" gene 1077796..1078869 /locus_tag="Alide2_1035" /db_xref="GeneID:10482059" CDS 1077796..1078869 /locus_tag="Alide2_1035" /inference="protein motif:PFAM:PF03595" /note="PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: dia:Dtpsy_2801 C4-dicarboxylate transporter/malic acid transport protein" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate transporter/malic acid transport protein" /protein_id="YP_004386958.1" /db_xref="GI:330823655" /db_xref="InterPro:IPR004695" /db_xref="GeneID:10482059" /translation="MSALPAAPAPQPAAPAGQGGLRDLSPAYFGLVMATGIVSLAADM QGWPLLARALLTLNAVQYVALWGLYLLRAWRYPRRFFGDMVDHARGAGYFTMVAATGI MASQCIVLLGDVALGFALWALAALLWVLLTYTIFTAFTIRPDKPTLDRGISGAWLLAV VSTQALAVSSALLAARIGQPLRLELNLLALSMWLWGGMLYIWMMALIFYRYLFFRFSP SDLSPPYWINMGAMAISTLAGSLLILNAPQAPFLVSLLPFLKGFTVFYWASGTWWIPM LVLLGIWRHGVRRFPLRYDPLYWGAVFPLGMYAACTWQMDKAMEFGFLDALPRLFFPV ALLAWLLAFAGMLRSVARQARGL" misc_feature 1077871..1078830 /locus_tag="Alide2_1035" /note="The Tellurite-resistance/Dicarboxylate Transporter (TDT) family; Region: TDT_like_1; cd09319" /db_xref="CDD:187759" misc_feature 1078702..1078704 /locus_tag="Alide2_1035" /note="gating phenylalanine in ion channel; other site" /db_xref="CDD:187759" gene 1078936..1080027 /locus_tag="Alide2_1036" /db_xref="GeneID:10482060" CDS 1078936..1080027 /locus_tag="Alide2_1036" /inference="protein motif:PFAM:PF10609" /note="PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: ajs:Ajs_3476 hypothetical protein" /codon_start=1 /transl_table=11 /product="ATPase-like, ParA/MinD" /protein_id="YP_004386959.1" /db_xref="GI:330823656" /db_xref="InterPro:IPR002744" /db_xref="InterPro:IPR019591" /db_xref="GeneID:10482060" /translation="MALTEQDLLAALASVQDPHTGKDFVGTRAVRNVRIDGGDVAFDV ELGYPAKSLVPVLREQFAAAARRVAGVRNVSVNISTKVAAHAVQRGVQLLPQVRNIIA VASGKGGVGKSTTAANLALALAAEGARVGVLDADIYGPSQPMMLGINRRPESLDGKNM EPLENYGVQVMSIGFLVDQDEAMIWRGPMATQALEQLLRQTNWKDLDYLLVDMPPGTG DIQLTLSQRVPMTGAVIVTTPQDIALLDARKGIKMFEKVGVPILGIVENMAVHVCSNC GHVEHIFGADGGRKMAQEYGMDYLGALPLDMQIRLQADSGKPTVVADPDGEVALIYKK VARDMAVKIAQKSKDFSSKFPTISISKST" misc_feature 1079233..1079955 /locus_tag="Alide2_1036" /note="cell division ATPase MinD, archaeal; Region: minD_arch; TIGR01969" /db_xref="CDD:131024" misc_feature 1079233..1079856 /locus_tag="Alide2_1036" /note="MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037" /db_xref="CDD:73300" misc_feature 1079251..1079274 /locus_tag="Alide2_1036" /note="Walker A motif; other site" /db_xref="CDD:73300" gene 1080213..1080716 /locus_tag="Alide2_1037" /db_xref="GeneID:10482061" CDS 1080213..1080716 /locus_tag="Alide2_1037" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC-like dehydratase; KEGG: bpt:Bpet0844 hypothetical protein" /codon_start=1 /transl_table=11 /product="MaoC domain-containing protein dehydratase" /protein_id="YP_004386960.1" /db_xref="GI:330823657" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10482061" /translation="MQSAIEVSPQRFRASYGRYLEDFEVGHVYEHRPGRTITDNDNIQ FSLMTMNAHPMHCDANYASKSEFGRLLVNSGLSLAVVLGMTVNDVSAKAIANLGWKEI RLTAPVFGGDTLYAESEVLEVRASKSRPTQGIVTTRTRGFNQDGVMVMEFIRMSLIPR RGHGVGD" misc_feature 1080261..1080698 /locus_tag="Alide2_1037" /note="FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal...; Region: FkbR2; cd03451" /db_xref="CDD:48046" misc_feature order(1080348..1080350,1080363..1080365,1080369..1080371, 1080378..1080380,1080423..1080425,1080432..1080437) /locus_tag="Alide2_1037" /note="putative active site [active]" /db_xref="CDD:48046" misc_feature order(1080363..1080365,1080369..1080371,1080378..1080380, 1080432..1080434) /locus_tag="Alide2_1037" /note="putative catalytic site [active]" /db_xref="CDD:48046" gene 1080766..1081746 /locus_tag="Alide2_1038" /db_xref="GeneID:10482062" CDS 1080766..1081746 /locus_tag="Alide2_1038" /inference="similar to AA sequence:KEGG:Vapar_0801" /note="KEGG: vap:Vapar_0801 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386961.1" /db_xref="GI:330823658" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482062" /translation="MRLPLRALRAALAALGLSVLGSVAHAGYPDKPIRLVVGFPPGQA TDMIARVVAKKLQDALGQPVVVDNKPGAAGIIGSEIVAKSAPDGYTLLVGSSGTMAIN PSLYSKLSYHPLRDFAPISLLSVVPLFLAVNPSFPAQTAADLVKQAKAAPGKINYGSG GSGVTSHLTMELLKHAQGIDLTHVPYKGSPAAVTDLIGGQINAMIDTGPALLPHMRTG KLRVLAVASEKRNPAAPGVPTMAEAGLGNFVAPAWVGLSAPKGTPKEIVDALYKALSS NWRDAPDVKEQLNALGAEPALMTPDEFARYIQAEIDKWALAVKLSGAKVD" sig_peptide 1080766..1080846 /locus_tag="Alide2_1038" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.933 at residue 27" misc_feature 1080841..1081731 /locus_tag="Alide2_1038" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1080907..1081734 /locus_tag="Alide2_1038" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1081754..1083205 /locus_tag="Alide2_1039" /db_xref="GeneID:10482063" CDS 1081754..1083205 /locus_tag="Alide2_1039" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD; KEGG: bpt:Bpet0850 hypothetical protein" /codon_start=1 /transl_table=11 /product="MmgE/PrpD family protein" /protein_id="YP_004386962.1" /db_xref="GI:330823659" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10482063" /translation="MTHSDPQIAAAAGAEPLMADTLSAQIAAWVHGFRLADVPHEVRT RATHLMLDALGIGLASTQWDFSRRTLDGLRELAGPGGDVPVIGQGQNLPLRDAVIQNA LQIHGLDYDDTHPSGVIHATTSVLPAVLGLATRLGASGEALLAAYIVGMEVATRLGTA ARSGFHQVGFHPTGLIGTFGCTLAAAHLLRLDVPAMVNAQGIALSVASGSLECLEDGA WTKRLHPGWGAAAGITAATLAKQGFIGPARAYEGRFGLYASHLGAELLAKADLGMATA GLGRVWEVMNVAIKPVPACHFTHAFADAASILSPQWGGAPIRRIVARVPPGAMKAVCE PIGKKLRPANAYDAQFSVPYSVATGLRRGRFSLDALDESAYTDPETLAIAALVQCEPD PTADFPRYFGGEVIVELADGRTLRHREPINRGAPGRPIANADIVAKFHENAARAVDRS HADHVRHAVLGIEGGQAAALSRLLGVKARMENA" misc_feature 1081811..1083163 /locus_tag="Alide2_1039" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene 1083202..1084374 /locus_tag="Alide2_1040" /db_xref="GeneID:10482064" CDS 1083202..1084374 /locus_tag="Alide2_1040" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: bpt:Bpet0851 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004386963.1" /db_xref="GI:330823660" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482064" /translation="MTTSTPPIAHDPEQEGLILDMLDRFLAVEVKPHVHRLEHDDVYP ADIVEKMREMGLFGCLIAPEYGGLGLSTTTYAKIIERMSRVWMSISGIVNSHLIMAMA VQRAGTEAQKREFLPRFATGELRGGVGLTEPDAGTDLQAIRTVARREGDHYVVNGSKM WITNSMYGNCLALLVKTDPKAEPRHKGMSLLIAEKGEGFIVSKKLEKLGYKGIDTCAL SFENYRVPADRLVGGVEGKGLQQVLGGLELGRINVAARGLGIAQAALEEAVAYAQVRK TFGKPIAEHQAIQLKLGEMATRTQAARLLVYAAAEAFDRGERCDMEAGMAKYFATEAG QENALEAMRIFGGYGYSKEYNVERLYRDAPLLLIGEGTNELQRMIIAKQLIERNPA" misc_feature 1083235..1084371 /locus_tag="Alide2_1040" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1083238..1084359 /locus_tag="Alide2_1040" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1083493..1083495,1083583..1083585,1083589..1083591, 1083682..1083684,1083688..1083690,1084303..1084311, 1084315..1084317,1084321..1084323) /locus_tag="Alide2_1040" /note="active site" /db_xref="CDD:173838" gene 1084371..1085600 /locus_tag="Alide2_1041" /db_xref="GeneID:10482065" CDS 1084371..1085600 /locus_tag="Alide2_1041" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: bpt:Bpet0852 hypothetical protein; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004386964.1" /db_xref="GI:330823661" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482065" /translation="MSAVQSSLYGAEAQGVAAPPLAGVRIIAVEQYGAGPFGTQHLAD LGAEVIKIENPHDGGDVGRAVGPHYFGPGDSHFYQSFNRNKKSITLDLKTAQGQEVLR ALAADADVVFNNLRGDLPAKLGLTYDRLRDVNPRIVCGHLSAYGRTGSRAAWPGYDYL MQAEAGYLSLTGEPDGPPARMGLSIIDLMTGTTAAMGLLAGVISARASGQGRDIDVSL FDVALHNLAYVATWYLNAGKAIGREARSSHPSLTPSQLYRTQDGWIFLMCNKEKFWGV LAECIGRPEWAQAPHYKTFKDRLAHRDRLTAELDAVLQTATTAQWMERFAGKVPAAPV YDVQQALDSGFVAEQERVLAFDHPGGPVRMVASPVRAGAHPVRSAPAMGADTEAVLRQ AGYDEQAILRLREHAVI" misc_feature 1084428..1085597 /locus_tag="Alide2_1041" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1085597..1086412 /locus_tag="Alide2_1042" /db_xref="GeneID:10482066" CDS 1085597..1086412 /locus_tag="Alide2_1042" /inference="protein motif:PFAM:PF00392" /note="KEGG: bpt:Bpet0853 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator with UTRA sensor domain" /protein_id="YP_004386965.1" /db_xref="GI:330823662" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0030528" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:10482066" /translation="MTLDAGSNPHHSPNPALQGSQPRYVQLAQTLLNEIESGHYPVGS QLPTEFELCEQFGVSRSTAREAVKRLVQLGLVVRQPRVGTTVRARTATTGYRQSMADV SDLYQYATETTLVIESRATVQIDAEQAQSLEATAGETWLNLHGRRHARTPSGEPAAPI CVTELWLHPAFRSIQGIQGALQGAVHAAIEQQFGELITEVEQEIRAVALNKADAEVLG APAGSPGLWVRRRYRNRMGQLVELATSIHPADRFSYTTVLRREWGVGGKGDAA" misc_feature 1085648..1086370 /locus_tag="Alide2_1042" /note="Transcriptional regulators [Transcription]; Region: PhnF; COG2188" /db_xref="CDD:32371" misc_feature 1085660..1085836 /locus_tag="Alide2_1042" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(1085660..1085662,1085666..1085668,1085735..1085737, 1085741..1085746,1085768..1085782,1085786..1085791, 1085798..1085800,1085828..1085833) /locus_tag="Alide2_1042" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 1085942..1086352 /locus_tag="Alide2_1042" /note="UTRA domain; Region: UTRA; cl06649" /db_xref="CDD:195338" gene 1086409..1087611 /locus_tag="Alide2_1043" /db_xref="GeneID:10482067" CDS 1086409..1087611 /locus_tag="Alide2_1043" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: rfr:Rfer_4176 major facilitator transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004386966.1" /db_xref="GI:330823663" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10482067" /translation="MRGQWTALTVTLAIQAMVAMAVLTLPVMAPAVAQALGASAAYTG VYVAIVYAGAMAASLAGGTAVARWGAIRVSQAGLVLCAAGLALCAVPSLAAMALGAFL IGLGYGPITPASSHLLARTTPAHRMSLVFSIKQTGVPLGGVLAGAIVPGVAVAAGWQG ALLLAAAANLACALIAQPLRPALDEDRDPRRPLVLGSLAQPIRVVLSHPALRMLAGCS FVFSMAQLSLTTYLVTYLHVTLAYTLIEAGLALSVAQTGGMVGRVLWGWIADRWSGAR RVLCALAVLMALSAIATAVLQPGTHYLLVLAVLVVFGASAIGWNGVYLAEVARQAPPG LASVATGGTLAITFFGVVLGPPAFGAMVGLFGTYRASFALLAVPTLLCVIVLLQGARG HAVAMRAP" sig_peptide 1086409..1086510 /locus_tag="Alide2_1043" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.949) with cleavage site probability 0.611 at residue 34" misc_feature <1087144..1087569 /locus_tag="Alide2_1043" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene 1087642..1088448 /locus_tag="Alide2_1044" /db_xref="GeneID:10482068" CDS 1087642..1088448 /locus_tag="Alide2_1044" /inference="protein motif:PFAM:PF03328" /note="PFAM: Aldehyde-lyase domain; KEGG: bpy:Bphyt_0618 citrate (pro-3S)-lyase" /codon_start=1 /transl_table=11 /product="HpcH/HpaI aldolase" /protein_id="YP_004386967.1" /db_xref="GI:330823664" /db_xref="GO:0016830" /db_xref="InterPro:IPR005000" /db_xref="GeneID:10482068" /translation="MIDRSFLFVPGDRPERFDKALSVQAHAVILDLEDAVAPQRKTEA RSAVATWLRAAQARVYVRINPLGTPWHEEDCSVLASPAVRGVMLPKAESAADVARVAA QLGEGQDCIPLVETVAGWFEAPALARVPRVRRLAFGSFDFMSDSGIRGDGPQLDTVRS QLVLVSRHAGLLPPVDGVSLAIDDATQLEADARRSLLWGFGGKLCIHPRQVPVVHAAF APTEAEVAWARRVVDALAAGPLGAIAVDGKLVDKPVAQLAQAILQEAAAG" misc_feature 1087654..1088403 /locus_tag="Alide2_1044" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene 1088562..1090463 /locus_tag="Alide2_1045" /db_xref="GeneID:10482069" CDS 1088562..1090463 /locus_tag="Alide2_1045" /inference="protein motif:PFAM:PF01512" /note="KEGG: dia:Dtpsy_2798 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding" /codon_start=1 /transl_table=11 /product="respiratory-chain NADH dehydrogenase domain 51 kDa subunit" /protein_id="YP_004386968.1" /db_xref="GI:330823665" /db_xref="GO:0010181" /db_xref="GO:0016491" /db_xref="GO:0051287" /db_xref="InterPro:IPR002023" /db_xref="InterPro:IPR011538" /db_xref="InterPro:IPR019554" /db_xref="InterPro:IPR019575" /db_xref="GeneID:10482069" /translation="MTSRNDPAAVPVATADDLRERIRRKAHLKGRQPEPQALADVQAL IGPRPPEGHARDLLIEHLHLINDRHGALHERHLVALARLMNLPMAEVYEVASFYHHFE ILRDGEQPARLVLRVCDSLSCQLAGAGELLARLPGRLRALGHGDVRVQAVPCVGRCEQ APVAVVHQCPVPHATAERVLAQVDLMPERAPALHPQSPAAMVFDAVPESAITRGGEGV APAWVGLAAYRARGGYRLAADVAQGRVPRDAVLAAMEDSGLRGLGGAGFPAGRKWRIV REQPAPRLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLVAALVVGTEACYVYLRDEY HGCRAILQQALAELRADPPCALPAIVLRRGAGAYICGEESAMIESIEGRRGEPRMRPP YIAQVGLFGRPTLEHNFETLYWVRDIVQHGPQWFAGFGRHGRRGLRSFSVSGRVKEPG VKLAPAGITLRELVDEYCGGMAEGHELYAYLPGGASGGILPARLADVPLDFDTLQPYG CFIGSAAVIVLGRNDRARDAALNVMRFFAHESCGQCTPCRVGTDKAARLMQAPVWDGD TLDDLALVMADASICGLGQAAPNPIRCMHKYFAHEVGEGPWPGDLPPPRGGVRTERIP PATPGEATP" misc_feature 1088709..1089059 /locus_tag="Alide2_1045" /note="NADH-quinone oxidoreductase, E subunit; Region: nuoE_fam; TIGR01958" /db_xref="CDD:131013" misc_feature 1088895..1089113 /locus_tag="Alide2_1045" /note="TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-...; Region: TRX_Fd_NuoE_W_FDH_beta; cd03082" /db_xref="CDD:48631" misc_feature order(1088901..1088903,1088907..1088909,1089012..1089020) /locus_tag="Alide2_1045" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48631" misc_feature order(1088913..1088915,1088928..1088930,1089021..1089023, 1089033..1089035) /locus_tag="Alide2_1045" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48631" misc_feature 1089282..1090364 /locus_tag="Alide2_1045" /note="NADH-quinone oxidoreductase, F subunit; Region: nuoF_fam; TIGR01959" /db_xref="CDD:131014" misc_feature 1089327..1089806 /locus_tag="Alide2_1045" /note="Respiratory-chain NADH dehydrogenase 51 Kd subunit; Region: Complex1_51K; pfam01512" /db_xref="CDD:144926" misc_feature 1089879..1090031 /locus_tag="Alide2_1045" /note="SLBB domain; Region: SLBB; pfam10531" /db_xref="CDD:192616" misc_feature 1090140..1090274 /locus_tag="Alide2_1045" /note="NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; pfam10589" /db_xref="CDD:192637" gene 1090460..1093321 /locus_tag="Alide2_1046" /db_xref="GeneID:10482070" CDS 1090460..1093321 /locus_tag="Alide2_1046" /EC_number="1.7.99.4" /inference="protein motif:TFAM:TIGR01591" /note="SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Formate dehydrogenase, alpha subunit; KEGG: dia:Dtpsy_2797 formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Ferredoxin; 4Fe-4S binding domain; Molydopterin dinucleotide-binding domain" /codon_start=1 /transl_table=11 /product="formate dehydrogenase subunit alpha" /protein_id="YP_004386969.1" /db_xref="GI:330823666" /db_xref="GO:0008863" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR001450" /db_xref="InterPro:IPR006478" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:10482070" /translation="MSAIPFELDGRPVQAEPGETIWQAARRHGVQIPHLCHTDGLRPD GNCRACVVEIAGERTLAPSCCRAPTPGMQVQARSPRARKSQQMVLELLLSDMPDSGYK WNDASENVAESTFQAGATGQFGSESVGQHGELSAWGHALGVAVRPALAALRRAQPAPD PSHPAMAVQLDACIQCTRCVRACREVQVNDVIGYALRGADAKIAFDLDDPMGESTCVG CGECVQACPTGALSPKTHVGSQKVDRKVDSVCPFCGVGCLVTYNVRGEKIISVEGRDG PANRGRLCVKGRFGFDYAHHPQRLTVPLVRRPGAAKDWQGQARPDDWREVFREASWDE ALQLAADGLRRLRDGHGPKALAGFGSAKGSNEEAYLFQKLVRTGFGSNNVDHCTRLCH ASSVAALLEGVGSGAVSNPVRDVEHAELILVIGSNPTANHPVAATWMKNAAKRGAKIV LADPRVTDIGRHAWRVLQFRPDTDVAMLNALIHTVIEEGLADQDFIRERALNYEALRE NVRAYSPEAMEPVCGVPAATLREVARAFARARGAMILWGMGVSQHVHGTDNARCLIAL SAITGQIGKPGTGLHPLRGQNNVQGASDAGLIPMMFPNYQRVDNAEAHAWFERFWGMP LDDRPGYTVVEIMHKALVGDDDPHKVRGMYIMGENPAMSDPDLNHARQALASLSHLVV QDIFLTETAWLADVVLPASAWPEKTGSVSNTDRMVQLGRRALAPPGDARPDLWIIQQI ARRMGLDWAYEGEESGVAAVYEEMRQAMAGAIAGIGWERLARESSVTYPCLSADDPGQ PIVFGERFPTPTGRVTLVPADIIPADERPDADYPLVLITGRQLEHWHTGSMTRRSAVL DAIEPHATASLHGDELARLGLAPGDWASVRSRRGAVRVRVRRDDGTPRGAVFMPFAYV EAAANLLTNAALDPFGKIPEFKYCAVAVRGIDAGAPATA" misc_feature 1090466..1093294 /locus_tag="Alide2_1046" /note="Uncharacterized anaerobic dehydrogenase [General function prediction only]; Region: COG3383" /db_xref="CDD:33190" misc_feature 1090469..1090684 /locus_tag="Alide2_1046" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(1090553..1090558,1090565..1090567,1090592..1090594, 1090598..1090609,1090646..1090651) /locus_tag="Alide2_1046" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(1090565..1090567,1090598..1090600,1090607..1090609, 1090649..1090651) /locus_tag="Alide2_1046" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature 1091096..1091155 /locus_tag="Alide2_1046" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature 1091198..1092925 /locus_tag="Alide2_1046" /note="Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H)...; Region: MopB_Formate-Dh-H; cd02753" /db_xref="CDD:73321" misc_feature order(1091207..1091209,1091213..1091218,1091222..1091224, 1091228..1091230,1091309..1091311) /locus_tag="Alide2_1046" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:73321" misc_feature order(1091315..1091317,1091543..1091545,1091627..1091632, 1091729..1091740,1091747..1091752,1091813..1091818, 1091822..1091824,1091873..1091875,1091879..1091881, 1092098..1092106,1092113..1092118,1092212..1092217, 1092428..1092430,1092434..1092436,1092446..1092448, 1092506..1092517,1092521..1092523,1092557..1092562, 1092656..1092658) /locus_tag="Alide2_1046" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:73321" misc_feature 1092944..1093288 /locus_tag="Alide2_1046" /note="Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum-; Region: MopB_CT; cl09929" /db_xref="CDD:158784" misc_feature order(1092977..1092982,1092986..1092997,1093190..1093192, 1093214..1093216,1093262..1093267) /locus_tag="Alide2_1046" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:30307" gene 1093332..1093895 /locus_tag="Alide2_1047" /db_xref="GeneID:10482071" CDS 1093332..1093895 /locus_tag="Alide2_1047" /inference="similar to AA sequence:KEGG:Dtpsy_2796" /note="manually curated; KEGG: dia:Dtpsy_2796 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386970.1" /db_xref="GI:330823667" /db_xref="GeneID:10482071" /translation="MSPRPRISVAVVMRRELLNNRWQPWRWSPAEVVPHEEPFGSAPR LLHQDEAEQRWLFPAFDVELFRDDAEGYYLNLSAPQPCWFVHWRMDDEPGPDGEQLAR PVDVSLSYHDAGRWLDAQENVDQLPVSAAVRQWLQAFVEAHYQPEPRRRRRPQSFRSL TDRFGNPASVSTGKSRGGGAQGECGHG" misc_feature 1093350..1093772 /locus_tag="Alide2_1047" /note="Protein of unknown function (DUF3305); Region: DUF3305; pfam11749" /db_xref="CDD:152185" gene 1093888..1094496 /locus_tag="Alide2_1048" /db_xref="GeneID:10482072" CDS 1093888..1094496 /locus_tag="Alide2_1048" /inference="similar to AA sequence:KEGG:Ajs_3468" /note="KEGG: ajs:Ajs_3468 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386971.1" /db_xref="GI:330823668" /db_xref="GeneID:10482072" /translation="MAEGFLDRWSRRKQQARAGEPAGAPPAEAAGGDDVPPPAEAAPA PEPVAPVPAPTLQDVQALTHESDFSAFVARGVAPEVRNAAMKKLFGDPRFNVMDGLDV YVEDYTRPDPLPLAALRQLASAKVLGLVEEDPRGHTGAADAVAQSGVCKAIPSQQVLA AAPPQGAHGAGPVSQAADAQDPDMRLQPDHAPRPQGPGDGAA" misc_feature 1093897..1094229 /locus_tag="Alide2_1048" /note="Protein of unknown function (DUF3306); Region: DUF3306; pfam11748" /db_xref="CDD:192818" gene 1094456..1096519 /locus_tag="Alide2_1049" /db_xref="GeneID:10482073" CDS 1094456..1096519 /locus_tag="Alide2_1049" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S binding domain; KEGG: ajs:Ajs_3467 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /protein_id="YP_004386972.1" /db_xref="GI:330823669" /db_xref="GO:0009055" /db_xref="GO:0051536" /db_xref="InterPro:IPR001450" /db_xref="GeneID:10482073" /translation="MPLDPKALGTALHEELTLHSTLCRREAGAFQQAVCSGQAVLVAC TQEERLFTELAGRTQGATSPLRFVNIRETGGWSRDASQAGPKIAALLAAAHLPEPEPV PAVAFESGGRLLIIGALDAAERAAALLDDVLDVTLFTQGPGEAGGGQERRHPVLGGRI VALTGWLGRFELQWLADNPIDLDLCTRCNACVAACPEGAIGLDYQIDMAACTGHRDCV KACAVAGAIRFDREAEPQSQSFDLVLDLRPAGASPTFLQHAPPQGYLRWDGQNLQALL RLRELVGEFDKPKFFNYNQKLCAHSRNREVGCSACVDICSAEAIASDPARQQVVVNPH LCVGCGACTTVCPTGAMGYAYPSAQDMGARIRTLLATYQQAGGRQPGLLLHDQEKGRQ LVHELGRAAQLGVAHGVPAHMMPVALWHTASTGLDLWLSAIAQGAAQIVLLLTGEEAP QYAEALRAQMEVAQALLRDLGYAGTHLHCVHARSATDLDAGLRALDGQRGAVPVQAAR FAPTNDKRATLELALDHLLAHAPAAALPEAIALPGGPSPWGTVVVDKDRCTLCMSCVS ACPASALQDNPQAPQLRFIERNCVQCGLCERTCPEGAIALQPRLLLTPERGQPRLLHE TRPYGCIRCGRPFGTLQAVEAMLGRLAGHPMFQGEALERLKMCGDCRVIDLYSAQNEV KVTDL" misc_feature <1094888..>1095121 /locus_tag="Alide2_1049" /note="Uncharacterized Fe-S protein [Energy production and conversion]; Region: COG1600" /db_xref="CDD:31788" misc_feature 1094993..1095055 /locus_tag="Alide2_1049" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature <1095008..1095508 /locus_tag="Alide2_1049" /note="ferredoxin; Validated; Region: PRK07118" /db_xref="CDD:180852" misc_feature 1095440..1095505 /locus_tag="Alide2_1049" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" misc_feature <1096121..>1096432 /locus_tag="Alide2_1049" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature 1096124..1096264 /locus_tag="Alide2_1049" /note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838" /db_xref="CDD:193313" gene 1096516..1097151 /locus_tag="Alide2_1050" /db_xref="GeneID:10482074" CDS 1096516..1097151 /locus_tag="Alide2_1050" /inference="similar to AA sequence:KEGG:Dtpsy_2793" /note="KEGG: dia:Dtpsy_2793 cytoplasmic chaperone TorD family protein" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone TorD family protein" /protein_id="YP_004386973.1" /db_xref="GI:330823670" /db_xref="GeneID:10482074" /translation="MSSTTAHLTAPPTTTALDEETARAELYGLLAQLYYAPPEPGLLA ALRVAVTEAPASGAFLQEPWQQLVAVAREMVDGAVADEYDALFGGVGKPEVYLYGSHY LSGFLNEKPLARLRADLQGLGLAAPEDMPDTEDHIACLCEVMRYLIAGDDGGVCHLQS QRTFFAGHLQPWVQQLCDALQAQPRARFYAALARFTRAFMEVEAQGFDMLE" misc_feature 1096693..1097055 /locus_tag="Alide2_1050" /note="Nitrate reductase delta subunit; Region: Nitrate_red_del; cl00958" /db_xref="CDD:186283" gene 1097287..1097499 /locus_tag="Alide2_1051" /db_xref="GeneID:10482075" CDS 1097287..1097499 /locus_tag="Alide2_1051" /inference="protein motif:TFAM:TIGR02811" /note="TIGRFAM: Formate dehydrogenase, TAT signal-containing; KEGG: dia:Dtpsy_2792 formate dehydrogenase region TAT target" /codon_start=1 /transl_table=11 /product="formate dehydrogenase region TAT target" /protein_id="YP_004386974.1" /db_xref="GI:330823671" /db_xref="InterPro:IPR014177" /db_xref="GeneID:10482075" /translation="MQNNQSPPSRRRFFAGAATVGAAAAAVATLPRMAAQELPAAARA PRATPERGGGYHESDHVRRYYDTTRI" sig_peptide 1097287..1097391 /locus_tag="Alide2_1051" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.929 at residue 35" gene 1097521..1100493 /locus_tag="Alide2_1052" /db_xref="GeneID:10482076" CDS 1097521..1100493 /locus_tag="Alide2_1052" /EC_number="1.7.99.4" /inference="protein motif:PRIAM:1.7.99.4" /note="PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: dia:Dtpsy_2791 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain" /codon_start=1 /transl_table=11 /product="Nitrate reductase" /protein_id="YP_004386975.1" /db_xref="GI:330823672" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006656" /db_xref="InterPro:IPR006657" /db_xref="InterPro:IPR006963" /db_xref="GeneID:10482076" /translation="MLLTKKSSHAPQGVQTSSPFVHSLRRGLSQALPTMDRRAFLRRS GLGVGVGIAASQLTLVRKTQAAEGARPGLGTTKVEVRRTVCTHCSVGCAVDAVVENGV WVRQEPVFDSPINMGAHCAKGASLREHGHGEYRLRYPMKLVGGKYERISWDQALDEIA ARMQELRKASGPDSVYFVGSSKHSNEQSYLMRKFVSFWGSNNCDHQARICHSTTVAGV ANTWGYGAMTNSYNDMQNSKCAFYIGSNAAEAHPVSMLHMLHAKENGCKMIVADPRFT RTAAKADLYVRFRSGTDIPVLFGLLYHIFKNGWEDKKYINDRVYGMDKIREEVMAKWT PDKVEEASGVPEAVLAQAAEMMAKNRPSTLVWCMGQTQHSIGNAMVRASCIVQLALGN VGVPGGGANIFRGHDNVQGATDIGPNPDSLPGYYGLAEGSWKHFANAWGVDLDWIKSR YASPAMMAKNGITVSRWIDGVLEKNELIDQDSNLRGVFFWGHAPNSQTRGLEMKRAMD KLDLLVVVDPYPSATAAMAAMPGKPEDLNPNRAVYLLPACTQFETSGSATASNRSLQW REKVIEPLWESRSDHMIMYQLAQKLGFGKELVKNYQMQKVKGMDEPVPEDILREVNRC CWTIGYTGQSPERLKAHMRHMSAFDVKTLKCTASVVDKESGYDMKGDYFGLPWPCWGT PELKHPGTPNLYQTTRHVMDGGGNFRANFGVERDGVNLLAEDGSHSLGADITTGYPEF DHVLLKKLGWWDDLTEAEKKAADGKNWKTDPSGGIIRVVMKVHGCYPFGNAKARAVVW NFPDAIPLHREPIYGTRPDLAAKYPTHDDKNAFWRMPTLYKSLQEKNVADRLYEKFPL ILSSGRLVEYEGGGEETRSNPWLAELQQEAFVEINPKAAASRGIRNGDRVWLSTPTGA RLNVQALVTERVGPDTCWMPFHFSGRWQGQDMLAYYPKGAHPVVRGEAVNTGTTYGYD SVTMMQETKTTICNVERA" misc_feature 1097755..1099293 /locus_tag="Alide2_1052" /note="Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]; Region: FwdB; COG1029" /db_xref="CDD:31232" misc_feature 1097764..>1098801 /locus_tag="Alide2_1052" /note="Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_Formate-Dh-Na-like; cd02752" /db_xref="CDD:73320" misc_feature order(1097773..1097775,1097779..1097784,1097794..1097796, 1097878..1097880,1098274..1098279) /locus_tag="Alide2_1052" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:73320" misc_feature order(1097884..1097886,1098136..1098138,1098148..1098150, 1098250..1098252,1098256..1098258,1098265..1098270, 1098334..1098342,1098391..1098393,1098397..1098399, 1098619..1098627,1098634..1098639,1098733..1098738) /locus_tag="Alide2_1052" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:73320" misc_feature <1098982..1099998 /locus_tag="Alide2_1052" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:158783" misc_feature 1100074..1100487 /locus_tag="Alide2_1052" /note="Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_CT_Formate-Dh-Na-like; cd02792" /db_xref="CDD:30324" misc_feature order(1100098..1100112,1100116..1100127,1100323..1100325, 1100410..1100412,1100458..1100463) /locus_tag="Alide2_1052" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:30324" gene 1100521..1101141 /locus_tag="Alide2_1053" /db_xref="GeneID:10482077" CDS 1100521..1101141 /locus_tag="Alide2_1053" /inference="protein motif:PFAM:PF00037" /note="PFAM: 4Fe-4S binding domain; KEGG: dia:Dtpsy_2790 4Fe-4S ferredoxin iron-sulfur binding domain protein" /codon_start=1 /transl_table=11 /product="4Fe-4S ferredoxin iron-sulfur binding domain-containing protein" /protein_id="YP_004386976.1" /db_xref="GI:330823673" /db_xref="GO:0009055" /db_xref="GO:0051536" /db_xref="InterPro:IPR001450" /db_xref="GeneID:10482077" /translation="MARMKFICDAERCIECNGCVTACKNEHEVPWGVNRRRVVTLNDG VPGEKSISVACMHCSDAPCMAVCPVNCFYRTEEGIVLHDKDVCIGCGYCSYACPFGAP QFPAQGTFGVRGKMDKCTFCAGGPEEHGSQAEFEKYGRNRLAEGKLPACAEMCSTKAL LAGDGDVVADIFRTRVVQRGKGAEVWGWGTAYGSRQAGQPPAGAKS" misc_feature 1100521..>1101012 /locus_tag="Alide2_1053" /note="Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]; Region: HybA; COG0437" /db_xref="CDD:30786" gene 1101138..1101371 /locus_tag="Alide2_1054" /db_xref="GeneID:10482078" CDS 1101138..1101371 /locus_tag="Alide2_1054" /inference="similar to AA sequence:KEGG:Dtpsy_2789" /note="KEGG: dia:Dtpsy_2789 putative lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386977.1" /db_xref="GI:330823674" /db_xref="GeneID:10482078" /translation="MMKRAWHILGAVGAMAVLAACGEKPQTGAGVQHGAPLYQGTGSQ FMAPGWKAGDASSWQQELKARMQHGQNEYNRVR" sig_peptide 1101138..1101206 /locus_tag="Alide2_1054" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.937) with cleavage site probability 0.693 at residue 23" gene 1101385..1102581 /locus_tag="Alide2_1055" /db_xref="GeneID:10482079" CDS 1101385..1102581 /locus_tag="Alide2_1055" /inference="protein motif:TFAM:TIGR01583" /note="KEGG: ajs:Ajs_3461 formate dehydrogenase gamma subunit; TIGRFAM: Formate dehydrogenase, gamma subunit; PFAM: Cytochrome b/b6, N-terminal" /codon_start=1 /transl_table=11 /product="formate dehydrogenase subunit gamma" /protein_id="YP_004386978.1" /db_xref="GI:330823675" /db_xref="GO:0008863" /db_xref="InterPro:IPR005797" /db_xref="InterPro:IPR006471" /db_xref="GeneID:10482079" /translation="MKHLLCALLVACGGAWAQAPAEPASGAAPAAASTGLAPVAGVKG QNIFDVKPDASEEPGYAAQTNAERAKVQPGNNAPVWRQVREGTTGYSSLPRSQAPEAG NLIQPFAQYPGSRYTTAGQAWREVRNNWIIPYGAALLGITVLALAIFYLSRGALGREP ADGSGRRIERFTPFERAAHWCNATAFVTLALTGIVMAFGKFFLQPVLGQQLFGWLAFG LKNVHNFMGPLFAVSLTVIVLTFVKDNIASRADFVWLSKAGGMFSNKEVPSHRFNAGE KGMFWWGITIPGVFVVLSGLVLDRLIPGWGLVRAEMQIAHMVHATLAVWMMALLLGHI YMGTIGMRGAFKAMKTGYVSEAWAREHHELWADDVRSGKIPAQRSGPARAEAAAPAKS ALGGTP" sig_peptide 1101385..1101438 /locus_tag="Alide2_1055" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.987 at residue 18" misc_feature 1101877..1102506 /locus_tag="Alide2_1055" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene 1102578..1102898 /locus_tag="Alide2_1056" /db_xref="GeneID:10482080" CDS 1102578..1102898 /locus_tag="Alide2_1056" /inference="similar to AA sequence:KEGG:Dtpsy_2787" /note="KEGG: dia:Dtpsy_2787 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386979.1" /db_xref="GI:330823676" /db_xref="GeneID:10482080" /translation="MISVSSSLARRCAAGLALGALACVAAAKLPPLTPQAQAKAAEAA AKAAWAGKVDAYKLCLAQDRVVAQYRRTAQDVRPAAAMPACADPGPFSYTPPPEAPAS APKS" sig_peptide 1102578..1102661 /locus_tag="Alide2_1056" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.864 at residue 28" gene 1102978..1103844 /locus_tag="Alide2_1057" /db_xref="GeneID:10482081" CDS 1102978..1103844 /locus_tag="Alide2_1057" /inference="protein motif:PFAM:PF02634" /note="PFAM: Formate dehydrogenase, subunit FdhD; KEGG: dia:Dtpsy_2786 formate dehydrogenase subunit FdhD" /codon_start=1 /transl_table=11 /product="formate dehydrogenase subunit FdhD" /protein_id="YP_004386980.1" /db_xref="GI:330823677" /db_xref="GO:0008863" /db_xref="InterPro:IPR003786" /db_xref="GeneID:10482081" /translation="MTRTPERQTPSTAPRLPRLTRAAAPLTHAVQAVNERGEREELHI PAERPLTVYVDRRELVTLMTLGAHPELLVLGYLRNQRLVDSADEIESVTVDWEVNAAA VVTRRGIARIEERTARKVVTTGCGQGSVFGGLMDEMAGIRLAPARLTQADLYGIVNAI RLQESTYKSAGSVHGCALFQGQRMLVFVEDVGRHNAIDTIAGWMWMQPDASAMQGGDK VFYTTGRLTSEMVIKSAQMGVPIVVSRSGMTQMGHAVASRLGLCAIGRATNRRFLCYS GAERLVLQPELA" misc_feature 1103110..1103823 /locus_tag="Alide2_1057" /note="FdhD/NarQ family; Region: FdhD-NarQ; cl00659" /db_xref="CDD:186130" gene 1103854..1106385 /locus_tag="Alide2_1058" /db_xref="GeneID:10482082" CDS 1103854..1106385 /locus_tag="Alide2_1058" /inference="protein motif:PFAM:PF02687" /note="PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2785 protein of unknown function DUF214" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386981.1" /db_xref="GI:330823678" /db_xref="InterPro:IPR003838" /db_xref="GeneID:10482082" /translation="MASPSSSFIGLGWRTLWRDLRAGELRLLMVAVTLAVAALTSVGF FADRLRGGLERDALQLLGGDAVLASDNPTPAPVVKQARALGLASVTTLGFPTMARAQE SQGGASRLVALKSVEPGYPLRGRLQVSDDAQRPGAPTQDIPAPGEAWVDAPLLNALSL GLGDPLLLGDTQLRVTRIITLEPDRGAGFMSFAPRVMINAQDLPATGLVQPASRITYR FAVAGRPDAVKRFTAWATEAVAGPGMRGVRVESLDSGRPEMRQTLDRAQKFLNLVALL AALLSAVAVALAARGFANDHLDAAALLRVLGQSQHTIAGAYVLEFLLVGLCASAVGVL LGFAVHHVFVLLLAGLVESALPAASLWPVALGVGVGLTLMCAFGLPPVLQLAQVPPLR VMRRDLGSVRPTSLAALGLGLAGFAALLLVVSRDWKLGSIAVGGFAAAVLLFAALAWV AVRLLRKAVSETMAPRWLVLATRQIAARPAYAVVQVASLAVGLLALVLLVLLRTDLIA SWQRATPAHAPNRFVINIMPDQADAFRQMLRQDGVAQYDWYPMFRGRLVAINGRAVNL DDYPDDRAKGLVDREFNLSNAREAPGHNLIVAGRWTPGEEDAVSVEEGIAQTLGLKLG DRLRFDIGGAASEARITSLRRVDWGSMRANFFVMYPVAHMPDVPLTYLAAYRAPERPG FDNALVHAFPNVTNVDMSATLAQVQVVLAQVIGAVEFLFVFTLAAGLVVLFAAVTATR EERAREFAIMRAVGARASLLRQVQRAELAGVGLLAGFLASCVAVAVGWTLARYVFDFS WTAQPWVPLAGAAAGALLALAAGWWGLREVLRRPVVQTLRSAAQE" misc_feature 1103872..1106268 /locus_tag="Alide2_1058" /note="Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3127" /db_xref="CDD:32941" misc_feature <1104754..1104987 /locus_tag="Alide2_1058" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 1106388..1106615 /locus_tag="Alide2_1059" /db_xref="GeneID:10482083" CDS 1106388..1106615 /locus_tag="Alide2_1059" /inference="similar to AA sequence:KEGG:Dtpsy_2784" /note="KEGG: dia:Dtpsy_2784 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386982.1" /db_xref="GI:330823679" /db_xref="GeneID:10482083" /translation="MQTDDTADWEPDWSQAPEGWDWLAQDEDGRWYWYRTEPIVGVGG GVWRSNSRNQQYAGQGRPNPAWDGSLRRRPN" gene 1106669..1108225 /locus_tag="Alide2_1060" /db_xref="GeneID:10482084" CDS 1106669..1108225 /locus_tag="Alide2_1060" /inference="similar to AA sequence:KEGG:Ajs_3456" /note="KEGG: ajs:Ajs_3456 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386983.1" /db_xref="GI:330823680" /db_xref="GeneID:10482084" /translation="MAIEKDDGTTLATALCEALRAAEGGPVQHLETHLSHLLLTPAHA YKLKKPLHLPFADFRTLAARRHFCAEELRLNQRLAPALYLDMLPVLGSARHPRLGTAQ EADAAIDWVLRMRRFPAGSELDALVRAGALAPAELDAFAERLARFHAQAPGAPTDSNW GTAARVAKAIADVLDTLAPLLDGPGRAGLAALRGWFDARQPALAGHWAARRAAGHVRE CHGDLHLGNVVRIDGAITAFDCLEFSPALRWIDTLADTGFLTMDLHAHGRGDLAWRFL DAYLAVSGDYAGLAVLRPYEVYRALVRAMAARLRAAQGAAVALGPDYLACAERLAAPL LSPRLLITHGLSGSGKSTVAAALLQQGAVRLRSDVERKRLHGLAPLADSAAQGLDIYT REASARTFGHLAQQARAVLQAGYPVIVDAAFLRRGERYAFHALARELGLPFAILHCHA ALGQLRERLRQRRAAGTDPSEADLAVLARQQDQAEPLAPEEQAHTLDLATDQDWDAPA LYRRWLAVQA" misc_feature 1106798..1107544 /locus_tag="Alide2_1060" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2187" /db_xref="CDD:32370" misc_feature 1107689..1108210 /locus_tag="Alide2_1060" /note="Predicted kinase [General function prediction only]; Region: COG0645" /db_xref="CDD:30990" misc_feature 1107689..>1108012 /locus_tag="Alide2_1060" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature order(1107698..1107700,1107713..1107724) /locus_tag="Alide2_1060" /note="Active site [active]" /db_xref="CDD:73295" gene 1108269..1108661 /locus_tag="Alide2_1061" /db_xref="GeneID:10482085" CDS 1108269..1108661 /locus_tag="Alide2_1061" /inference="similar to AA sequence:KEGG:Dtpsy_2782" /note="KEGG: dia:Dtpsy_2782 transcriptional regulator, TraR/DksA family" /codon_start=1 /transl_table=11 /product="TraR/DksA family transcriptional regulator" /protein_id="YP_004386984.1" /db_xref="GI:330823681" /db_xref="InterPro:IPR000962" /db_xref="GeneID:10482085" /translation="MNTTALTDPQREQLRALLEQRKAELLAELGEVQRDTLAVARTAG SAEAEPPGSPRDQANSMASSMVRDAEAARDHAELVAVRAALARLADGSYGECTDCGQG VGVARLLAQPAAARCIACQSKAEARGQH" misc_feature 1108284..1108658 /locus_tag="Alide2_1061" /note="Prokaryotic dksA/traR C4-type zinc finger; Region: zf-dskA_traR; cl00755" /db_xref="CDD:193930" gene 1108661..1109098 /locus_tag="Alide2_1062" /db_xref="GeneID:10482086" CDS 1108661..1109098 /locus_tag="Alide2_1062" /inference="protein motif:PFAM:PF01152" /note="PFAM: Globin, truncated bacterial-like; KEGG: ajs:Ajs_3454 globin" /codon_start=1 /transl_table=11 /product="globin" /protein_id="YP_004386985.1" /db_xref="GI:330823682" /db_xref="GO:0019825" /db_xref="InterPro:IPR001486" /db_xref="GeneID:10482086" /translation="MWAGAGPLPTIAPMPAPDSAPPATPFEWMGGEPRIRQLVDRFYD LMDLEPGYAELRATHGSTLDDARDKLFWFLCGWLGGPDHYQDRFGHPRLRARHMPFAI GILERDQWVTCMDQAMGETGVPEDLRARLNQSFMNTADWMRNR" misc_feature 1108736..1109095 /locus_tag="Alide2_1062" /note="Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is...; Region: Trunc_globin; cd00454" /db_xref="CDD:29978" misc_feature order(1108745..1108747,1108760..1108765,1108772..1108777, 1108784..1108786,1108880..1108885,1108892..1108894, 1108991..1108993,1109000..1109002,1109012..1109014, 1109021..1109023,1109054..1109056,1109063..1109065) /locus_tag="Alide2_1062" /note="apolar tunnel; other site" /db_xref="CDD:29978" misc_feature order(1108787..1108789,1108823..1108828,1108856..1108858, 1108868..1108870,1108877..1108882,1108910..1108912, 1108928..1108930,1108934..1108936,1108946..1108951, 1108958..1108960,1108979..1108981,1108988..1108990, 1109072..1109074,1109084..1109086) /locus_tag="Alide2_1062" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:29978" misc_feature order(1108793..1108795,1108802..1108807,1108997..1108999, 1109006..1109008,1109018..1109026) /locus_tag="Alide2_1062" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29978" gene complement(1109148..1109906) /locus_tag="Alide2_1063" /db_xref="GeneID:10482087" CDS complement(1109148..1109906) /locus_tag="Alide2_1063" /inference="protein motif:PFAM:PF07702" /note="KEGG: reu:Reut_B4840 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator with UTRA sensor domain" /protein_id="YP_004386986.1" /db_xref="GI:330823683" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0030528" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:10482087" /translation="MAPTPDSPPLFQQVAQTLRQRLRDGTYPVGIPLPGERELTREFG VARTTIRSALARLQEEGSITRLRGQGTLPVAQPSTDEHSKIRNGLLENILRFGQRTRT ALVSAQFVQATSTVAQALQVASGTRVMRVVRVRKSHRRPLLCTEVYLPAAIAEGIHPQ MLEDMPLLEAIERTGHAFAQGEQELIAVNASPEVAQLLEIATGAPLLRVNRVVADAQG VPIQYLIGHYAPDHYQYRMRLSRTGGTTTVWITD" misc_feature complement(1109190..1109900) /locus_tag="Alide2_1063" /note="Transcriptional regulators [Transcription]; Region: PhnF; COG2188" /db_xref="CDD:32371" misc_feature complement(1109694..1109882) /locus_tag="Alide2_1063" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(1109694..1109705,1109709..1109714, 1109742..1109744,1109751..1109756,1109760..1109774, 1109796..1109801,1109805..1109807,1109874..1109876, 1109880..1109882)) /locus_tag="Alide2_1063" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(1109205..1109618) /locus_tag="Alide2_1063" /note="UTRA domain; Region: UTRA; cl06649" /db_xref="CDD:195338" gene complement(1110000..1110854) /locus_tag="Alide2_1064" /db_xref="GeneID:10482088" CDS complement(1110000..1110854) /locus_tag="Alide2_1064" /inference="protein motif:PFAM:PF00463" /note="PFAM: Isocitrate lyase/phosphorylmutase; KEGG: reu:Reut_B4841 2,3-dimethylmalate lyase" /codon_start=1 /transl_table=11 /product="isocitrate lyase and phosphorylmutase" /protein_id="YP_004386987.1" /db_xref="GI:330823684" /db_xref="GO:0003824" /db_xref="InterPro:IPR000918" /db_xref="GeneID:10482088" /translation="MNLHQRIREPGIVLAAGVYDALSALLVEQSGLPAAYLSGASVAY TRFGRSDIGLLSLDDVANVTTNIRERVDLPLIVDADTGFGNALNVMRTVRLLERAGAS AIQLEDQTSPKRCGHLQGKSVISTREMCGKIRAAVDARRHAHTLVIARTDAVAVEGFD AALERAARYAEAGADMLFVEAVRSREQMQQVNRQLGPLCPLMANMVEGGMTPVSSAQD LAEIGYRLVIFPGGTVRALTHALQGYLSSLQAHGTTQPWCDRMLDFDGLNAVIGTPQL LALGQRYD" misc_feature complement(1110006..1110848) /locus_tag="Alide2_1064" /note="PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]; Region: PrpB; COG2513" /db_xref="CDD:32583" misc_feature complement(1110120..1110848) /locus_tag="Alide2_1064" /note="Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377" /db_xref="CDD:119340" misc_feature complement(order(1110120..1110125,1110129..1110137, 1110141..1110149,1110441..1110443,1110450..1110455, 1110462..1110464,1110471..1110476,1110561..1110563, 1110570..1110572,1110582..1110587,1110603..1110605, 1110645..1110650,1110657..1110662,1110666..1110671, 1110678..1110683,1110687..1110698,1110705..1110710, 1110720..1110725,1110735..1110737,1110756..1110764, 1110768..1110770,1110777..1110782,1110786..1110800, 1110804..1110815,1110819..1110821,1110840..1110842)) /locus_tag="Alide2_1064" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:119340" misc_feature complement(order(1110165..1110167,1110237..1110239, 1110243..1110245,1110315..1110317,1110405..1110407, 1110534..1110536,1110615..1110617,1110621..1110623, 1110702..1110704,1110735..1110743,1110747..1110749)) /locus_tag="Alide2_1064" /note="active site" /db_xref="CDD:119340" misc_feature complement(order(1110534..1110536,1110615..1110617, 1110621..1110623,1110702..1110704)) /locus_tag="Alide2_1064" /note="Mg2+/Mn2+ binding site [ion binding]; other site" /db_xref="CDD:119340" gene complement(1110851..1111420) /locus_tag="Alide2_1065" /db_xref="GeneID:10482089" CDS complement(1110851..1111420) /locus_tag="Alide2_1065" /inference="protein motif:TFAM:TIGR02087" /note="KEGG: reu:Reut_B4842 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase, small subunit" /protein_id="YP_004386988.1" /db_xref="GI:330823685" /db_xref="GO:0003861" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR011827" /db_xref="GeneID:10482089" /translation="MSTTAVPAACMPTDAPGRCWVFGDDINTDYLAPGKYMKYGIDVI AQHCLEDVEPCFAREVRAGDLIIAGRNFGAGSSREQAVEVLRHLGVRCVVAQSFAGLF YRNGFNLGLPLLLGPAAMEAPAWGIAPGALACLDLEQARLQLPDTQQALQCQPIPPHL LALVADGGLVPHLRKRIARERLHSTASNP" misc_feature complement(<1111097..1111360) /locus_tag="Alide2_1065" /note="Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-...; Region: IPMI_Swivel; cd01577" /db_xref="CDD:73275" misc_feature complement(<1110986..1111201) /locus_tag="Alide2_1065" /note="Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme...; Region: Aconitase_swivel; cl00215" /db_xref="CDD:185833" misc_feature complement(1111187..1111195) /locus_tag="Alide2_1065" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73275" gene complement(1111417..1112697) /locus_tag="Alide2_1066" /db_xref="GeneID:10482090" CDS complement(1111417..1112697) /locus_tag="Alide2_1066" /inference="protein motif:TFAM:TIGR01343" /note="KEGG: xtr:100490803 isopropylmalate/citramalate isomerase large subunit-like; TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha" /codon_start=1 /transl_table=11 /product="homoaconitate hydratase family protein" /protein_id="YP_004386989.1" /db_xref="GI:330823686" /db_xref="GO:0016836" /db_xref="InterPro:IPR001030" /db_xref="InterPro:IPR006251" /db_xref="GeneID:10482090" /translation="MTPRTLAQKLVGRACGDPQVQPGDIVTCRVDLAMMHDSGGPRRL KPHLDSLGVRVWDPERIVVVTDHYVPATDEGSAQIVRIARDWVREQGIRHFYDEQGIC HVVTPSHGHLRPGMFAVGGDSHSCTGGAFGAYMFGIGATEMLGVAVSGEIWLRVPHTI AMEWTGRLPSGVCAKDMMLYMCTRFGMDGGQYEAVEFCGDAVRALSMNERMTLSNMAT ELGAQAGLIAPDATTVQWLQAAGVPGDALHDMTQWCTDEGAPLLARHRMEAGSLAPQV SAPGSPAQAQDATAFAHERLDIAYIGACTGAKLDDLRMAAQVFRGGRKAAVGVRLMVA PASAQDQRQAADEGVLQTLVDAGAELLPNACGACAGYGANTFAPDTTAISTTARNFTG RMGAASSRVFLGSPYTVAASAITGYITDPRELLA" misc_feature complement(1111423..1112691) /locus_tag="Alide2_1066" /note="3-isopropylmalate dehydratase large subunit; Reviewed; Region: PRK00402" /db_xref="CDD:179006" misc_feature complement(1111444..1112604) /locus_tag="Alide2_1066" /note="Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle; Region: Aconitase; cl00285" /db_xref="CDD:185883" misc_feature complement(order(1111519..1111521,1111534..1111536, 1111591..1111593,1112329..1112334,1112581..1112583, 1112590..1112592)) /locus_tag="Alide2_1066" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153129" misc_feature complement(order(1111537..1111539,1111591..1111596, 1111603..1111605,1111786..1111788,1112326..1112328)) /locus_tag="Alide2_1066" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153129" gene complement(1112694..1113662) /locus_tag="Alide2_1067" /db_xref="GeneID:10482091" CDS complement(1112694..1113662) /locus_tag="Alide2_1067" /inference="similar to AA sequence:KEGG:100490977" /note="KEGG: xtr:100490977 UPF0065 protein in tcbD-tcbE intergenic region-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386990.1" /db_xref="GI:330823687" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482091" /translation="MFGKKGWLWGGAAMALGAWMLPAAAQVNRPITIIVGATPGGSTD TLARVIAQSMGTTLKRTVIVENKPGAGGNIAAQYVAKSAPDGSTLLMSFTSHTINATL FKNLPFNPVADFTPITMVAQVPSVLVARKNAPFDDVKGLIDYARKHPNKLTFAIGGQG SSLHLASEQFKFATQTDIVNIPYKGTGPALSDLLASDTVDLMFASTINVLPHYKQGTL KFLGVSSLQPLPQFAGLPAIASVVPGYRSEAWFGLFGPAKLPREVTDTLYAAVRQAID APAYRQRMESEAATVPTMTPAQFADFIKKDVQFWGDIVKKSGATVE" sig_peptide complement(1113585..1113662) /locus_tag="Alide2_1067" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.991 at residue 26" misc_feature complement(1112709..1113581) /locus_tag="Alide2_1067" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1112706..1113524) /locus_tag="Alide2_1067" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1113760..1114410) /locus_tag="Alide2_1068" /db_xref="GeneID:10482092" CDS complement(1113760..1114410) /locus_tag="Alide2_1068" /inference="protein motif:PFAM:PF01713" /note="KEGG: dia:Dtpsy_2779 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal" /codon_start=1 /transl_table=11 /product="Smr protein/MutS2" /protein_id="YP_004386991.1" /db_xref="GI:330823688" /db_xref="InterPro:IPR002625" /db_xref="GeneID:10482092" /translation="MSAALTARSFADLQPLRRALQEAAAQEAERARLRREAERRARAE RHLFRDAVGPVAPLKGLPDRHWPAPVPPEPQPLQRALDEKRVLRESLSDAFDVSTLLD VDDQLSFRRPGMGQDVTRRLRSGQWSIQRQLDLHGLRVDEAREALGIFIRLAHRTGLR CVRVVHGKGLGSPGKAPVLKGRVQGWLVQKKEVLAFVQARPADGGAGALVVLLAPN" misc_feature complement(1113772..1114272) /locus_tag="Alide2_1068" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2840" /db_xref="CDD:32668" misc_feature complement(1113772..1114014) /locus_tag="Alide2_1068" /note="Smr domain; Region: Smr; cl02619" /db_xref="CDD:194381" gene complement(1114407..1115567) /locus_tag="Alide2_1069" /db_xref="GeneID:10482093" CDS complement(1114407..1115567) /locus_tag="Alide2_1069" /inference="similar to AA sequence:KEGG:Dtpsy_2778" /note="KEGG: dia:Dtpsy_2778 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386992.1" /db_xref="GI:330823689" /db_xref="GeneID:10482093" /translation="MSLARWASIALLALAGCALPLAPPEPDALLAPHLRLIGVAELGP GTEYGGATIGGLSGIDYDQERGEYLLISDAGARVYTARLQYGAHGLAAPQFTGVQALR HASGQPFAPWWRPQPGMDRPDAEAVRWLPGARALLWASEGDFGRGFGPQLRESRADGT HLRDLPLPAGFTPTAESGPLRNGTLEGLALSPDGRTAWLAMELPWRQDGESATPASGG APVRITAIDVASGRPLRQIAYQPDAVPRTRRLPGPQMNGVSEILADGPHHLLVLERAY SAGAGFAARLYRIDTREGSDTLALDTIAPGNHQPAPKTLVADLSALGIAPDNIEGMAW GAPLRAGARGSGCVLVFVSDDNFNPAQVTQFIATEYLPLRGGHERCGTTGPR" misc_feature complement(1114452..>1115414) /locus_tag="Alide2_1069" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4246" /db_xref="CDD:33969" gene complement(1115564..1116277) /locus_tag="Alide2_1070" /db_xref="GeneID:10482094" CDS complement(1115564..1116277) /locus_tag="Alide2_1070" /inference="protein motif:TFAM:TIGR00608" /note="KEGG: ajs:Ajs_3450 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758" /codon_start=1 /transl_table=11 /product="DNA repair protein RadC" /protein_id="YP_004386993.1" /db_xref="GI:330823690" /db_xref="InterPro:IPR001405" /db_xref="GeneID:10482094" /translation="MPLKDLPADAQPREKLLARGPAALSDAELLAILLRTGMVGKGVL QLAQELLGAPVRDDDGRITGGGFGGMAGLLHAGAADLARIKGLGPAKRAELVAVLELA RRALAQQLREREVFDSPGAVQGYLQLHLAARAHEVFAVLFLDGQNRLIAMEELFRGTL TQTSVYPREVVLRALHHHAAAVVLAHNHPSGSVQPSRADEALTQTLKAALALVDVRVL DHVIVAPGAALSMAEQGLV" misc_feature complement(1115570..1116277) /locus_tag="Alide2_1070" /note="hypothetical protein; Reviewed; Region: PRK00024" /db_xref="CDD:178801" misc_feature complement(1115582..1115905) /locus_tag="Alide2_1070" /note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466; cd08071" /db_xref="CDD:163702" misc_feature complement(order(1115681..1115683,1115690..1115692, 1115714..1115716,1115720..1115722,1115870..1115872)) /locus_tag="Alide2_1070" /note="MPN+ (JAMM) motif; other site" /db_xref="CDD:163702" misc_feature complement(order(1115681..1115683,1115714..1115716, 1115720..1115722)) /locus_tag="Alide2_1070" /note="Zinc-binding site [ion binding]; other site" /db_xref="CDD:163702" gene 1116359..1116835 /locus_tag="Alide2_1071" /db_xref="GeneID:10482095" CDS 1116359..1116835 /locus_tag="Alide2_1071" /inference="protein motif:PFAM:PF00254" /note="PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_2776 peptidylprolyl isomerase FKBP-type" /codon_start=1 /transl_table=11 /product="FKBP-type peptidylprolyl isomerase" /protein_id="YP_004386994.1" /db_xref="GI:330823691" /db_xref="InterPro:IPR001179" /db_xref="GeneID:10482095" /translation="MTADAIASTPSLPTVQQGSFLTLHYRLAGPAGDVINTFDEKPAT LSVGTGELSPALEQRLIGLAEGTRATFELAAGEAFGERNPDMQQWVARKLLSELGDPD EEYAVGDVVEFPTPDGMGQYAGVVLQVSDDGAVRFDFNHPLAGVPVTFEVQLIGVL" misc_feature 1116395..1116823 /locus_tag="Alide2_1071" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587" /db_xref="CDD:187101" gene 1116841..1117824 /locus_tag="Alide2_1072" /db_xref="GeneID:10482096" CDS 1116841..1117824 /locus_tag="Alide2_1072" /EC_number="1.17.1.2" /inference="protein motif:HAMAP:MF_00191" /note="PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: ajs:Ajs_3448 4-hydroxy-3-methylbut-2-enyl diphosphate reductase" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-enyl diphosphate reductase" /protein_id="YP_004386995.1" /db_xref="GI:330823692" /db_xref="InterPro:IPR003451" /db_xref="GeneID:10482096" /translation="MQKPQEIVLAEPRGFCAGVDRAIEIVERALQKFGRPIYVRHEIV HNTYVVNDLKAKGAIFIEDLAEVPPGATLIFSAHGVSRAVQDEAKARGFTIFDATCPL VTKVHVEVAKLAREGYEFIMIGHKGHPEVEGTMGQLDSGIHLVEDVADVARVQPAQTE KLAVVTQTTLSVDDAAEITTAVRARFPNIREPKQQDICYATQNRQDAVKLLSPQVDLV IVVGSPTSSNSNRLRELAERMGTPAYMVDSAEELRHEWFDGIARVGLTAGASAPEVLV QAVIARIKELGAVSVRKMAGIEETLKFPLPKGLKLHAAAGEEPAAAGTDKR" misc_feature 1116856..1117743 /locus_tag="Alide2_1072" /note="LytB protein; Region: LYTB; cl00507" /db_xref="CDD:193845" misc_feature 1116856..1117698 /locus_tag="Alide2_1072" /note="(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming); Region: ispH_lytB; TIGR00216" /db_xref="CDD:161769" gene 1118032..1119360 /locus_tag="Alide2_1073" /db_xref="GeneID:10482097" CDS 1118032..1119360 /locus_tag="Alide2_1073" /inference="protein motif:PFAM:PF01595" /note="KEGG: ajs:Ajs_3447 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386996.1" /db_xref="GI:330823693" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR002550" /db_xref="InterPro:IPR005170" /db_xref="GeneID:10482097" /translation="MEIAILFALILLNGVFAMSELALVSARKTRLQKLIDEGDSGAIA AAKLGEDPTRFLSTIQIGITSIGVLNGIVGESALARPLAEWLAGLGLQAQYAGYIATG LVVVLITYFSIVVGELVPKRLGQSHPEALARIVARPINWLALATKPFVRLLSISTEAL LRALGVRQQQGSAVTEDEIHAVLAEGTSAGVIESHEHQMVRNVFRLDDRQIGSLMVPR ADVVFLDVQASFEENLQRIEASDHARFPVARGGMEDILGVLSARQWLSRAVRDAAARD LSTHPLQTALYVPETINARELLDNFRQSDMHMAFVIDEYGEVQGIVTLQDLIEAIIGE FQSLDPADSWAVQREDGSWLLDGHIPVPELKDRLQLSKLPEEDRGRYQTLSGMVMLLT GRLPNVTDTVQWENWQFEVMDMDGKTIDKVLATRVQSEPLQLDGQGAAGD" misc_feature 1118032..1118619 /locus_tag="Alide2_1073" /note="Domain of unknown function DUF21; Region: DUF21; pfam01595" /db_xref="CDD:190047" misc_feature 1118035..1119324 /locus_tag="Alide2_1073" /note="Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:31445" misc_feature 1118686..1119021 /locus_tag="Alide2_1073" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590" /db_xref="CDD:73090" misc_feature 1119067..1119312 /locus_tag="Alide2_1073" /note="Transporter associated domain; Region: CorC_HlyC; pfam03471" /db_xref="CDD:190650" gene complement(1119382..1120059) /locus_tag="Alide2_1074" /db_xref="GeneID:10482098" CDS complement(1119382..1120059) /locus_tag="Alide2_1074" /inference="protein motif:PFAM:PF00571" /note="KEGG: aav:Aave_3769 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core" /codon_start=1 /transl_table=11 /product="putative signal transduction protein with CBS domains" /protein_id="YP_004386997.1" /db_xref="GI:330823694" /db_xref="InterPro:IPR000644" /db_xref="GeneID:10482098" /translation="MFFVFGPAGQIYRGGAHQLPQVLAVSGVQRPQALSPHSRPPSPE TGVPAHRPGPEPSSAPPMRQLQAAWAYAQTGRVRPKARRPLTQVSDVMTREVSSLPAT MSIQDAWQALRLEQLSQAPVVDARGQVVGLLRRSDMASADLLPDLDGIKRTFAQAHRP ITDVMLSPAPTVSDDTDLRRVAKAMLETGLSGLPVTDEAGMLQGFVARSDILRALVAD PPLDLWS" misc_feature complement(1119424..1119798) /locus_tag="Alide2_1074" /note="FOG: CBS domain [General function prediction only]; Region: COG0517" /db_xref="CDD:30863" misc_feature complement(1119418..1119780) /locus_tag="Alide2_1074" /note="The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-...; Region: CBS_pair; cl10010" /db_xref="CDD:99705" gene 1120112..1121428 /locus_tag="Alide2_1075" /db_xref="GeneID:10482099" CDS 1120112..1121428 /locus_tag="Alide2_1075" /EC_number="6.1.1.11" /inference="protein motif:HAMAP:MF_00176" /note="PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase, class IIa; KEGG: dia:Dtpsy_2772 seryl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="Seryl-tRNA synthetase" /protein_id="YP_004386998.1" /db_xref="GI:330823695" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR002317" /db_xref="InterPro:IPR015866" /db_xref="GeneID:10482099" /translation="MLDILLLRKDLASAVARLETRKKPQAFLNVEAFQALESERKTIQ TRTEELQSRRNQLSKQIGQLMGKGEKDAAEAAKAQVATIKEELDGSAARLEQIQSELQ AMLAAVPNLPHESVPVGSDEAGNVEVRRWGTPRDFSFAVKDHVDLGAPLGLDFDMGAK LSGSRFTVMKGPIARLHRALAQFMLDVQTGEHGYTECYVPYIVNADSLRGTGQLPKFE GDLFAAKKGGQEGEPVPDDAQLYLIPTSEVPLTNIVRDEVLAESDLPIRLTAHSPCFR SEAGSYGRDTRGMIRQHQFDKIEMVQIVHPDKSYEALEEMTRHAEAILQKLGLPYRVV SLCTGDMGFGSAKTYDLEVWLPAQGTYREISSVSNCEAFQARRMQARFKNAQGRNELV HTLNGSGLAVGRTLVAVLENCQQADGSIAIPEVLRPYMGGLERLAA" misc_feature 1120112..1121419 /locus_tag="Alide2_1075" /note="seryl-tRNA synthetase; Provisional; Region: PRK05431" /db_xref="CDD:180077" misc_feature 1120112..1120447 /locus_tag="Alide2_1075" /note="Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403" /db_xref="CDD:145510" misc_feature 1120484..1121401 /locus_tag="Alide2_1075" /note="Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770" /db_xref="CDD:29815" misc_feature order(1120580..1120597,1120604..1120624,1120634..1120636, 1120640..1120642,1120646..1120648,1120655..1120657, 1120694..1120705,1120709..1120717,1120721..1120723, 1120775..1120780,1120817..1120819,1120829..1120831, 1120856..1120858,1120868..1120870,1120880..1120882, 1120928..1120930,1120991..1120993,1121396..1121401) /locus_tag="Alide2_1075" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29815" misc_feature order(1120601..1120603,1120844..1120846,1120850..1120852, 1120937..1120939,1120943..1120945,1120961..1120963, 1120970..1120972,1120979..1120981,1120985..1120987, 1120994..1120996,1121000..1121002,1121006..1121008, 1121198..1121209,1121297..1121299,1121303..1121305, 1121321..1121323) /locus_tag="Alide2_1075" /note="active site" /db_xref="CDD:29815" misc_feature 1120694..1120717 /locus_tag="Alide2_1075" /note="motif 1; other site" /db_xref="CDD:29815" misc_feature 1120934..1120945 /locus_tag="Alide2_1075" /note="motif 2; other site" /db_xref="CDD:29815" misc_feature order(1121306..1121314,1121321..1121323) /locus_tag="Alide2_1075" /note="motif 3; other site" /db_xref="CDD:29815" gene 1121486..1122427 /locus_tag="Alide2_1076" /db_xref="GeneID:10482100" CDS 1121486..1122427 /locus_tag="Alide2_1076" /inference="similar to AA sequence:KEGG:Daci_5376" /note="KEGG: dac:Daci_5376 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004386999.1" /db_xref="GI:330823696" /db_xref="GeneID:10482100" /translation="MIVRERPSGLRLLLVLRGSVLQRIQRSLLLNIALATLVTAVHGN LFSLKITLTPIPFTLIGLPLAIFLGFRNTTAYDRYWEGRKLWGELVHRTRSLSRQCLG WIEGGGPIASARRDTDVRVRIIHRAIAFAHVLRMRLRDQRDEALLQQWLTPTDFDAVR EASDPASMILLDIGRDLGECVRTDRIQPCLAASIDGTLSSLAAVAASCERIKNTPIPF SYTLLLHRTAYMYCFLLPFGLVDTTGFMTPFVVGIVAYTFFGLDALGDEIEEPFGLEN NDLPLDMLCRSIEISLLESLGEKDLPAPIEVDNFRLT" misc_feature 1121486..1122367 /locus_tag="Alide2_1076" /note="Bestrophin, RFP-TM, chloride channel; Region: Bestrophin; cl01544" /db_xref="CDD:194161" gene 1122490..1122574 /locus_tag="Alide2_R0011" /note="tRNA-Ser1" /db_xref="GeneID:10482101" tRNA 1122490..1122574 /locus_tag="Alide2_R0011" /product="tRNA-Ser" /db_xref="GeneID:10482101" gene complement(1122666..1122953) /locus_tag="Alide2_1077" /db_xref="GeneID:10482102" CDS complement(1122666..1122953) /locus_tag="Alide2_1077" /inference="similar to AA sequence:KEGG:MCA1626" /note="KEGG: mca:MCA1626 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387000.1" /db_xref="GI:330823697" /db_xref="GeneID:10482102" /translation="MSRSRVRSSLLVPLCIVAVAWMGEAMAGTSECYAIKDANKRAYC LAQVKRDPGNCYRIKDGDNRNQCLAEIKGSRDRCYAIKDQDSRKACLARTR" sig_peptide complement(1122870..1122953) /locus_tag="Alide2_1077" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.992 at residue 28" gene complement(1122950..1123474) /locus_tag="Alide2_1078" /db_xref="GeneID:10482103" CDS complement(1122950..1123474) /locus_tag="Alide2_1078" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387001.1" /db_xref="GI:330823698" /db_xref="GeneID:10482103" /translation="MRDEEKSLGKSLLDGLLAVGGLVWLGMIVIAMVSVIVAAWSVVR DALRGTSDPIKTVDLKQKLKRGVRLWCALCLLLLSLNALVMGEWTAFVLIGLAGLLLI SRPWHWLDARVGPSGRNLRYGTAVVAMVVGVSLLPPPKPSVRTAQLSQPNHTVHVALS QPSRAMDGSPEVGA" gene complement(1123488..1124783) /locus_tag="Alide2_1079" /db_xref="GeneID:10482104" CDS complement(1123488..1124783) /locus_tag="Alide2_1079" /inference="protein motif:PFAM:PF00589" /note="PFAM: Integrase, catalytic core, phage; KEGG: pol:Bpro_0966 phage integrase" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004387002.1" /db_xref="GI:330823699" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10482104" /translation="MIPREPRKELGAAQVAALWRRGTNHVGGVRGLILNVTMYGSRSW VLRYQVAGKRRDLGLGSYPSVTLADAREAARAARAKLAQGIDPIEDARRARARLVAEI HTSMTFGEAAKRYIASHEKGWKNAKHAQQWQRSLDMYATPVLGKMPVRDISLAMVLKV LEPIWSSKTETATRLRGRIESVIDWAIARGYRTDSNPARWKGLLDKLLPAPGKVTKTT HFQALPYAQLPVFMEQLVGQEGMGAKALLFLILTAARSGEVRGATWEEIDLAARVWTI PAERMKASKAHRVPLSDAAIALLQEMKSLTLAAGRASGKAYVFPSPNSRDPELGSQLS DMTLTAVLRRLKLEAVPHGFRSTFRDWCAEQTDYPNEVAEMALAHTVGNKVEAAYRRG DLLAKRQQLMQDWADYALGRRAGNMTVGHRSDSKAPTQN" misc_feature complement(1123503..1124693) /locus_tag="Alide2_1079" /note="integrase; Provisional; Region: PRK09692" /db_xref="CDD:170049" misc_feature complement(1123563..1124684) /locus_tag="Alide2_1079" /note="Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801" /db_xref="CDD:29502" misc_feature complement(order(1123617..1123619,1123647..1123649, 1123719..1123721,1123728..1123730,1123938..1123940, 1124019..1124021)) /locus_tag="Alide2_1079" /note="active site" /db_xref="CDD:29502" misc_feature complement(order(1123617..1123619,1123647..1123649, 1123719..1123721,1123728..1123730,1123938..1123940, 1124019..1124021)) /locus_tag="Alide2_1079" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29502" gene complement(1125367..1125864) /locus_tag="Alide2_1080" /db_xref="GeneID:10482105" CDS complement(1125367..1125864) /locus_tag="Alide2_1080" /inference="protein motif:PFAM:PF07799" /note="PFAM: Protein of unknown function DUF1643; KEGG: mtt:Ftrac_0456 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387003.1" /db_xref="GI:330823700" /db_xref="InterPro:IPR012441" /db_xref="GeneID:10482105" /translation="MYEIYHSEHDDQWRYTLGTIGKRPLITIGLNPSTATQEKLDNTV TKVEKVAQQCGFDSFIMLNLYPVRATDPQDLPSKPAPMACERNLEEIEKIIAQYPTPT IWAAWGELVMNRPYLYRTRDELFQRLQKYHPQWRRFGELTANGHPRHPRGLSYSWTLE PYELA" misc_feature complement(1125415..1125825) /locus_tag="Alide2_1080" /note="Protein of unknown function (DUF1643); Region: DUF1643; cl01787" /db_xref="CDD:194191" gene 1125984..1126217 /locus_tag="Alide2_1081" /db_xref="GeneID:10482106" CDS 1125984..1126217 /locus_tag="Alide2_1081" /inference="protein motif:PFAM:PF01381" /note="manually curated; PFAM: Helix-turn-helix type 3; KEGG: pde:Pden_0455 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004387004.1" /db_xref="GI:330823701" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10482106" /translation="MTRDEVLIAAFADELRSRRAALRLSQEELAHRAGINRTYIAKLE LARNQPTLTVLLRVAEALEVPLPELIAGALVRR" misc_feature 1126059..1126190 /locus_tag="Alide2_1081" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene complement(1127083..1129488) /locus_tag="Alide2_1082" /db_xref="GeneID:10482107" CDS complement(1127083..1129488) /locus_tag="Alide2_1082" /inference="similar to AA sequence:KEGG:Palpr_2996" /note="KEGG: ppn:Palpr_2996 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387005.1" /db_xref="GI:330823702" /db_xref="GeneID:10482107" /translation="MSLYTQLQQARSEEDVKDAYIKALGLKGYTKGLIDIQTNEIWFE AKDTGKHSSYAMFTQLLHYVQVALNQGEKVPPLLAVIDTEKAALMKSTDVLPFLAKKT VKWGKSASQYTQEALDEISAHIGTHFVSFKISTHEEEFISTVKAAIKSGDIIRTQITP DNLKQVFDKWVDMIGREITGVAEEDYALLFFADIMHDGTVSTHVNLPAELLHKNGAPV FSLGGKMYELGSKEGYRRFWAIYHRPPKSEYRDYLLERRDSLIPLDERSFKGAYYTPL HVVDKAYDKLAETLGKNWQREYIVWDMCCGVGNLEVKHSNPRNIYMSTLDQADVDVMK ATKTCVAAQRFQYDYLNDDITDDGQIDYSLSNKVPQGLRDAIAAGKKILVLINPPYAE ATNRGNTEVSLGTENKTGVATTRVGDSMTHYGYASRELFAQFLARIAIEMPTATVAMF STMKYVNAPNFEKFRLTWNAQYQGGFVIHNKAFDGLNGKFPIGFLIWKTDQAASQKTP ITEIAVEVLDKSAQAIGQKLYCNVPNAQLLTNWIGRQKPNDEDALPLINATTPITKTE GVRRTKWSDGAIGHVLIGGNDLQHAEQQTAIFSSVHSIGHAGGFFITHENLLQAVTVF SVRKLVRPTWLNDRDQFLQPTEPLTDVFQTDCLIWTLFNRGNLTAGANGLKWNGRTWS LVNHFIPFTETEVGAPDRFESDFMVQYLADKTLTSEAQAVLDAGRTLWQAYFAQTDVR TVRDEYKLNRPDVGWYQIRNALKARSEGGDTAPVNFAPFEQAYQALTDKLRPMVFQLG FLR" gene complement(1129735..1131000) /locus_tag="Alide2_1083" /db_xref="GeneID:10482108" CDS complement(1129735..1131000) /locus_tag="Alide2_1083" /inference="protein motif:SMART:SM00382" /note="KEGG: pol:Bpro_0961 hypothetical protein; manually curated; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="AAA ATPase" /protein_id="YP_004387006.1" /db_xref="GI:330823703" /db_xref="GO:0000166" /db_xref="GO:0017111" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482108" /translation="MAEILGRNNEDISEDARDAEASCDTSSTEVGEPCPVAVEAQTPA TVQDEVPQPEPNLPESEPSNDEVDSDPRDAVQLPKQAREFGLLTRADVQAEPSSIPLI HGLISKGQLVMIAGPSGSGKSVFQLHLGAALLNGQEVFGHSIPKRARMLYVNLEGDLK PRLEAIEQHHPGWSFPAPDAMFLTRPWRLNDRDSVEDLANHVNQAGGVDVIFIDTLNR ATPGSDENLSTDMGMVIAHANLLINLTGAAVVLTHHTGKAKERGPRGHSSLYAALDTC LMVDETESGMRMVELVKTRQGPGGKKYYFTIENIALGEDDYGLPVVGPALTEVEGSPE VEKAANATALTPQQKEALVSLKLHMQNGLNGEPLEKISHDEALDVVKAAFAAIPTKNR STRAREAIDALIEAGRLLKNDSGMLSIGS" misc_feature complement(1130197..1130679) /locus_tag="Alide2_1083" /note="ATPases associated with a variety of cellular activities; Region: AAA; smart00382" /db_xref="CDD:128665" misc_feature complement(<1130194..1130676) /locus_tag="Alide2_1083" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(1130632..1130640,1130650..1130655)) /locus_tag="Alide2_1083" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature complement(order(1130356..1130361,1130536..1130541, 1130545..1130547,1130632..1130640,1130650..1130652)) /locus_tag="Alide2_1083" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature complement(1130359..1130373) /locus_tag="Alide2_1083" /note="Walker B motif; other site" /db_xref="CDD:29986" gene complement(1131291..1131551) /locus_tag="Alide2_1084" /db_xref="GeneID:10482109" CDS complement(1131291..1131551) /locus_tag="Alide2_1084" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387007.1" /db_xref="GI:330823704" /db_xref="GeneID:10482109" /translation="MIYEDQFTLSLLTACVMQQNQLLTQQIAVQRDLMDRVDTVGDRL WRMERRITTPPVDQAGASKRAAQKRNQARAQAHARKRPGKKA" gene 1132086..1132937 /locus_tag="Alide2_1085" /db_xref="GeneID:10482110" CDS 1132086..1132937 /locus_tag="Alide2_1085" /inference="protein motif:PFAM:PF08867" /note="KEGG: app:CAP2UW1_1805 FRG domain protein; PFAM: FRG domain; SMART: FRG domain" /codon_start=1 /transl_table=11 /product="FRG domain-containing protein" /protein_id="YP_004387008.1" /db_xref="GI:330823705" /db_xref="InterPro:IPR014966" /db_xref="GeneID:10482110" /translation="MNLTEITRAEIASPSDLMTWAEHLERLNIEQGPMLFRGQAETYA NLQPTLARATQGGAYDVAALLERRLITNFRTHYRDLKTLPADMPSADDVGARSDVDVL SLMQHYEVPSRLLDWSASVWVAAYFACASSASKDAELWFVDSSLLDLTPDELPASAVR ERIAASIGGRPAEYHPRWGMPLLAVVEPASNARLAAQHGRLTASDNATVDHAQLLWRL ATLRHGNERTGQSFGRHIIRASRKRDILRFLSEEKGVSAKSLFPDIVGLGRFLRWEFE ALRTELY" misc_feature 1132173..1132493 /locus_tag="Alide2_1085" /note="FRG domain; Region: FRG; pfam08867" /db_xref="CDD:149812" gene complement(1132989..1133204) /locus_tag="Alide2_1086" /db_xref="GeneID:10482111" CDS complement(1132989..1133204) /locus_tag="Alide2_1086" /inference="similar to AA sequence:KEGG:Rvan_1233" /note="KEGG: rva:Rvan_1233 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387009.1" /db_xref="GI:330823706" /db_xref="GeneID:10482111" /translation="MATWAISEGAEKQCPQCGSIYVVKHHQVPVKDDDSADCEVCGIE LERWKSTRYPVYTLKERGQWPKHNDMP" gene 1133301..1133432 /locus_tag="Alide2_1087" /pseudo /db_xref="GeneID:10482112" gene 1133490..1134431 /locus_tag="Alide2_1088" /db_xref="GeneID:10482113" CDS 1133490..1134431 /locus_tag="Alide2_1088" /inference="similar to AA sequence:KEGG:Daci_5376" /note="KEGG: dac:Daci_5376 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387010.1" /db_xref="GI:330823707" /db_xref="GeneID:10482113" /translation="MIVRERPSGLRLLLVLRGSVLQRIQRSLLLNIALATLVTAVHGN LFSLKITLTPIPFTLIGLPLAIFLGFRNTTAYDRYWEGRKLWGELVHRTRSLSRQCLG WIEGGGPIASARRDTDVRVRIIHRAIAFAHVLRMRLRDQRDEALLQQWLTPTDFDAVR EASDPASMILLDIGRDLGECVRTDRIQPCLAASIDGTLSSLAAVAASCERIKNTPIPF SYTLLLHRTAYMYCFLLPFGLVDTTGFMTPFVVGIVAYTFFGLDALGDEIEEPFGLEN NDLPLDMLCRSIEISLLESLGEKDLPAPIEVDNFRLT" misc_feature 1133490..1134371 /locus_tag="Alide2_1088" /note="Bestrophin, RFP-TM, chloride channel; Region: Bestrophin; cl01544" /db_xref="CDD:194161" gene 1134494..1134583 /locus_tag="Alide2_R0012" /note="tRNA-Ser2" /db_xref="GeneID:10482114" tRNA 1134494..1134583 /locus_tag="Alide2_R0012" /product="tRNA-Ser" /db_xref="GeneID:10482114" gene 1134699..1136636 /locus_tag="Alide2_1089" /db_xref="GeneID:10482115" CDS 1134699..1136636 /locus_tag="Alide2_1089" /inference="similar to AA sequence:KEGG:Rfer_0701" /note="KEGG: rfr:Rfer_0701 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387011.1" /db_xref="GI:330823708" /db_xref="GeneID:10482115" /translation="MFRSAGANNVAGTGAVLLGASCIAAALGAAAHHPLAPVLALSLL SAIAAWTVSRPADLWCVLPALLPVASFTPWSGWWLVDGSDLLVLGAMGGAYLRWGVDA WRGPAATFARTPSGMHWMYVVLPLLLLLGVWRGLDDARGAASWATLLAQLWSQGPYGD YDLPSNTLRVAKSLAWGLLLMPVLYRWPQGAPLRLARGMVAGLLLVCAGVLWERGLYV GWVDFGTNYRTTAWFWEMHVGGAAIDAYLAMALPFAWWAAWSAPHGWRWYAAAALVLL STYAVLTTYSRGLYLAVLITGVALGALVRRYHFDVPDDTAWHRKAMVWLLAALVVETM GVWLGGAFMSDRLVRSNVDLHQRMDHWKRGVGLLHTPGQWILGLGVGRLPAHYSTQTT EGALAGRVRWLQKADGSTEAWLFGPMRPGVKGELALAQRVALAPGGGYKVRLRAHLDS PAWVKVQLCEQHLLYVSRCQLRTRQLSADSRTIDGWMELPLLGPAFESNGILSAWRGG VLSIKVLQANASMRLEGVELIDPQGRQVLRNPVFARGPSHWSSVAYENFLPWHMDNLL LELLVERGLLGLLALAAVVVWALLLLAHGIRSHKPLALIVGGSIGAALLIGAVVSIIE IPRVSTMLWLLLVVSPLVRED" gene 1136819..1138213 /locus_tag="Alide2_1090" /db_xref="GeneID:10482116" CDS 1136819..1138213 /locus_tag="Alide2_1090" /EC_number="2.7.8.6" /inference="protein motif:TFAM:TIGR03025" /note="TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Sugar transferase, PEP-CTERM system associated; KEGG: rfr:Rfer_0702 undecaprenyl-phosphate galactosephosphotransferase; PFAM: Bacterial sugar transferase" /codon_start=1 /transl_table=11 /product="exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" /protein_id="YP_004387012.1" /db_xref="GI:330823709" /db_xref="InterPro:IPR003362" /db_xref="InterPro:IPR017464" /db_xref="InterPro:IPR017475" /db_xref="GeneID:10482116" /translation="MFKIFNHYFRRRTILQVIMYSMVIVSTLIVSLALQGGMGVFNGA VISSGVIRGGVMAIGIIGVNFALGLYDRPGKLTIGQVRARAVLSFVLSMIIAGSILLL LPLQPPYQNEQTLIALLLIVGGMLVMRLLGNEMLPSSYTRQRVLIYGTGGRASIVGQS LLENDPSIELIGYFRGPQEKGPVIQGLNIISPGKTLTDVVREQRVNEIVVALSERRGG SMPLRELLDCKLQGIRVIDLATHFEQLLGQIHLEAVSAGWLIFGDGFKQGLVRSVVKR LFDILGSGILLLLSSPVMLVTALLIFIESGRPIFYRQERVGLNGDVFDVIKFRSMRQD AEKDGTPRWAGAGDTRVTRVGKIIRKMRIDELPQLFCVLKGDMSLVGPRPERPYFVER LTLDIPYYALRHGIKPGLTGWAQVRYHYGASIKDAEQKLQYDLYYVKNHSWFLDLIIL FETVGVVLTGKGAQ" misc_feature 1137011..1138204 /locus_tag="Alide2_1090" /note="sugar transferase, PEP-CTERM system associated; Region: EpsB_2; TIGR03013" /db_xref="CDD:163104" misc_feature 1137641..1138207 /locus_tag="Alide2_1090" /note="Bacterial sugar transferase; Region: Bac_transf; cl00939" /db_xref="CDD:193981" gene complement(1138250..1140556) /locus_tag="Alide2_1091" /db_xref="GeneID:10482117" CDS complement(1138250..1140556) /locus_tag="Alide2_1091" /inference="protein motif:PFAM:PF05226" /note="KEGG: dac:Daci_5418 histidine kinase; PFAM: CHASE2; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS" /codon_start=1 /transl_table=11 /product="multi-sensor signal transduction histidine kinase" /protein_id="YP_004387013.1" /db_xref="GI:330823710" /db_xref="GO:0005524" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR007890" /db_xref="GeneID:10482117" /translation="MKPFSEVGGRANLRREWVMLSLALLCLVTWLCASGTLRRIDHLV QDAGMRLNALPAHPDIVIVAIDDRSIEAIGRWPWRRALHAQLIEQISAQSPRALGLDI LFGEEDADYPGDDLLLARALERSGRAVLPVARRDLGSRSAADAPLALLRRASAQLGHV QVQVDPDGVARSLYRTEGPQDALWPHFSTAMLCAAGRDLPDCRGNAAPAGGPWARRDL QILRFAGGRQPAFTTYAYIDVLKGRLPAGALRDKYVLVGASATGLGDMFAAPMASQAE RIAGVEMIAHALNAELAQSHIRPAPRGWEMGFNLAPTVLALLAIVLLGPLAGLMSCTA LFIGTLAAAALAPTLSGWQLAAAPAMVGVTMAYPLWSWRRLSAAAYFLQLEMRELREA GLSPLPEEPPRPLLRGDVLEQRIHAVEDAARRLRRLHHFVSDSLQHLPSPTFVCDAQG HVTLANEAAQRYVQARYSLQGQAIGRLLAGLVQPHGNAPLLPRNGEQMDAIPPQQEGR DAYGRDMLMLCKPFTQDGNTIWLVTLVDLTDMRRAQQQRDQALHFISHDIRAPIASIL TLIEMHREFPEQLPQQELLARMERYARSSLAMAQGFVQLAGAQAQTYQSAPFDLAAAL EEAVDGAWAAAQEHGVEVHTATLPDAAPCHGDRSLICRAIANVLGNAIKFSPAGSTVR CALASEGAYWVISVRDQGPGIAPELQGNLFQPFKRLHEGSHPGVGGVGLGLALVQTVV QRHGGRVQVNSSSGVGAEFQLLLPRPHP" misc_feature complement(1139633..1140499) /locus_tag="Alide2_1091" /note="CHASE2 domain; Region: CHASE2; cl01732" /db_xref="CDD:194184" misc_feature complement(1138253..>1138906) /locus_tag="Alide2_1091" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature complement(1138268..1138579) /locus_tag="Alide2_1091" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(1138280..1138282,1138286..1138291, 1138304..1138306,1138310..1138312,1138358..1138369, 1138448..1138453,1138457..1138459,1138463..1138465, 1138469..1138471,1138538..1138540,1138547..1138549, 1138559..1138561)) /locus_tag="Alide2_1091" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(1138547..1138549) /locus_tag="Alide2_1091" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(1138361..1138363,1138367..1138369, 1138451..1138453,1138457..1138459)) /locus_tag="Alide2_1091" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(1140597..1142249) /locus_tag="Alide2_1092" /db_xref="GeneID:10482118" CDS complement(1140597..1142249) /locus_tag="Alide2_1092" /inference="protein motif:PFAM:PF04773" /note="KEGG: dac:Daci_5417 peptidoglycan-binding LysM; PFAM: FecR protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup" /codon_start=1 /transl_table=11 /product="FecR protein" /protein_id="YP_004387014.1" /db_xref="GI:330823711" /db_xref="InterPro:IPR002482" /db_xref="InterPro:IPR006860" /db_xref="InterPro:IPR018392" /db_xref="GeneID:10482118" /translation="MALAIWAATAHCGAYATTQDLEHLVRPGDTLEALSVHYLDTPRL WPQLQAHNHVADPRQLRPGSVLRIPAQLLPAGSAQVDFVHGQASATPPAGASAAPLQP GQSLDEGARLQVAPDSFVTVRLADGTLIRVQADTDLQLQQLRRRGRAGDAQSVLELRR GSVESSVPPSRDGARRFQVRTPKASTSVRGTRFAVTLTQDERTLAAVTAGALSVEPLL AAAPTAATLLDAGHGVVVAADGRVGTPRALLPAPDLSGLPTSVHDADFLTLALAPVAS AVAYQVQVARDADFTETLRSGTFGAPQVRLPALEDGSYHLSVRAVDDSGLPGKVAQRM LTIKAHPVAPLYQSPAPGGTVSRAQGELLCTPVAGVARYRIQVAADAGFAAPLLDKTS AQQCSAPVAALAPGQYYWRAASVRELPGGASDQGPYAPGQPFTVADNPSPPSAAALQS GGDGPGLQLRWPGKPGQSYRLQVAATDDFAAPLVDERLDTPAWASTSLAPGAYFVRIQ TRDPSGLESGFSTPRLLRVQAAVQTQSGLPVTSSDGQPLSRP" misc_feature complement(1141098..1142204) /locus_tag="Alide2_1092" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4254" /db_xref="CDD:33977" misc_feature complement(1142043..1142183) /locus_tag="Alide2_1092" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature complement(order(1142139..1142141,1142148..1142150, 1142163..1142165,1142172..1142174,1142181..1142183)) /locus_tag="Alide2_1092" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" misc_feature complement(1141617..1141922) /locus_tag="Alide2_1092" /note="FecR protein; Region: FecR; pfam04773" /db_xref="CDD:191085" gene complement(1142373..1143104) /locus_tag="Alide2_1093" /db_xref="GeneID:10482119" CDS complement(1142373..1143104) /locus_tag="Alide2_1093" /inference="protein motif:PFAM:PF00072" /note="KEGG: ctt:CtCNB1_0831 two component transcriptional regulator, winged; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal" /codon_start=1 /transl_table=11 /product="winged helix family two component transcriptional regulator" /protein_id="YP_004387015.1" /db_xref="GI:330823712" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10482119" /translation="MRIAALDDDTLQLELFTRALADMGHVCHTYATGAALLKDLRRET FDLLIMDWQLPDIQGPEIVDWVRQHLGAELPILFVTNRQEERDIVQGLACGADDFMVK PVRVGELMARIQALLRRAYPSSTREGVLEFGRYRFLPATRSLEMDGVPVELKAREYEL ALFLFQNIGRLLSRDHLREIIWGHSAEVISRSLDTHISRLRSLLDLRPSNGYMITAVY GVGYRFETVQPIPGEAAPEGGAPSR" misc_feature complement(1142427..1143104) /locus_tag="Alide2_1093" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature complement(1142754..1143089) /locus_tag="Alide2_1093" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1142796..1142801,1142808..1142810, 1142865..1142867,1142928..1142930,1142952..1142954, 1143081..1143086)) /locus_tag="Alide2_1093" /note="active site" /db_xref="CDD:29071" misc_feature complement(1142952..1142954) /locus_tag="Alide2_1093" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1142928..1142936,1142940..1142945)) /locus_tag="Alide2_1093" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1142793..1142801) /locus_tag="Alide2_1093" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1142433..1142717) /locus_tag="Alide2_1093" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(1142442..1142444,1142457..1142459, 1142493..1142498,1142520..1142522,1142529..1142531, 1142583..1142588,1142643..1142645)) /locus_tag="Alide2_1093" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene complement(1143283..1144587) /locus_tag="Alide2_1094" /db_xref="GeneID:10482120" CDS complement(1143283..1144587) /locus_tag="Alide2_1094" /EC_number="6.1.1.2" /inference="protein motif:TFAM:TIGR00233" /note="TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: dia:Dtpsy_2771 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib" /codon_start=1 /transl_table=11 /product="tryptophanyl-tRNA synthetase" /protein_id="YP_004387016.1" /db_xref="GI:330823713" /db_xref="GO:0000166" /db_xref="GO:0004830" /db_xref="GO:0005524" /db_xref="InterPro:IPR002305" /db_xref="InterPro:IPR002306" /db_xref="GeneID:10482120" /translation="MTTTRFLTGITPSGTPHLGNYAGMMRPAIAATREPGVENFYFLA DYHALIKCQEPERVHRSTLEIAASWLAAGLDPERVTFYRQSDIPEIPELTWFLTCVTG KGLLNRAHAYKAAQDKNAEAGRESDDGVTAGLFMYPVLMAADILLFNAHRVPVGRDQI QHIEMARDMAASFNHLYGEHFTLPEAAIEDNVATLLGLDGRKMSKSYDNTIPLFCAPA QLRKLIGSIVTDSRAPGEPKETEGSALFQIYQAFATPEQTAAMRRAYADGIAWGDAKQ MLFECIDREIAPMRARYDDLMAHPEKVEAALQIGAGRARAIARPFLQTLRAAVGLRPL SAAQPQAQGAQKAGKAALPAFKQYREADGKFYFKLVAADGRLLLQSTGFAAPRDAGQA IARLQKEAGALQALAPQLAPVAGVDAGEVSAALQALADTANT" misc_feature complement(1143292..1144584) /locus_tag="Alide2_1094" /note="tryptophanyl-tRNA synthetase; Reviewed; Region: PRK12284" /db_xref="CDD:183402" misc_feature complement(1143733..1144575) /locus_tag="Alide2_1094" /note="catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806" /db_xref="CDD:173903" misc_feature complement(order(1143973..1143975,1143979..1143984, 1144006..1144008,1144102..1144104,1144111..1144116, 1144120..1144125,1144129..1144131,1144156..1144158, 1144165..1144167,1144177..1144179,1144336..1144338, 1144447..1144449,1144462..1144464,1144519..1144521, 1144528..1144533,1144537..1144539,1144555..1144569)) /locus_tag="Alide2_1094" /note="active site" /db_xref="CDD:173903" misc_feature complement(1144528..1144539) /locus_tag="Alide2_1094" /note="HIGH motif; other site" /db_xref="CDD:173903" misc_feature complement(order(1144168..1144173,1144180..1144185, 1144189..1144191,1144267..1144272,1144276..1144287, 1144291..1144296,1144303..1144311,1144315..1144320, 1144438..1144443,1144450..1144452)) /locus_tag="Alide2_1094" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173903" misc_feature complement(1143970..1143984) /locus_tag="Alide2_1094" /note="KMSKS motif; other site" /db_xref="CDD:173903" misc_feature complement(<1143394..1143525) /locus_tag="Alide2_1094" /note="Domain of unknown function (DUF1508); Region: DUF1508; cl01356" /db_xref="CDD:194110" gene complement(1144599..1145267) /locus_tag="Alide2_1095" /db_xref="GeneID:10482121" CDS complement(1144599..1145267) /locus_tag="Alide2_1095" /inference="protein motif:PFAM:PF02163" /note="PFAM: Peptidase M50; KEGG: dia:Dtpsy_2770 peptidase M50" /codon_start=1 /transl_table=11 /product="peptidase M50" /protein_id="YP_004387017.1" /db_xref="GI:330823714" /db_xref="GO:0004222" /db_xref="InterPro:IPR008915" /db_xref="GeneID:10482121" /translation="MDLSNLIQTVLIYALPVLFSITVHEAAHGYTARHFGDNTAAMLG RVTLNPLKHIDPVGTVLMPLLLYFATSGNFLFGYAKPVPVNFHHLRNPKRDMVWVALA GPASNFAQAIAWALLLVVLVGMGTQERFFIEMARAGIAVNLVMWAFNLFPLPPLDGGR ILVGLLPWKQAHFIARVEPYGFFIVLALVVAGIVGQLWLRPLMSLGYSAIDLLIAPFI ALLR" misc_feature complement(1144683..1145240) /locus_tag="Alide2_1095" /note="Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the...; Region: S2P-M50_like_1; cd06158" /db_xref="CDD:100079" misc_feature complement(order(1144797..1144799,1144821..1144823, 1145184..1145186,1145193..1145198)) /locus_tag="Alide2_1095" /note="active site" /db_xref="CDD:100079" misc_feature complement(1144812..1144823) /locus_tag="Alide2_1095" /note="putative substrate binding region [chemical binding]; other site" /db_xref="CDD:100079" gene 1145386..1146558 /locus_tag="Alide2_1096" /db_xref="GeneID:10482122" CDS 1145386..1146558 /locus_tag="Alide2_1096" /inference="protein motif:PFAM:PF00015" /note="KEGG: dac:Daci_5413 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_004387018.1" /db_xref="GI:330823715" /db_xref="GO:0004871" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="GeneID:10482122" /translation="MGFDRWTIGARLTLAFGSVVLWVGALMAVALWGLAQPGGAGAAA VPWVWALGVLAVLVAAVSWLSLRSGIVRPLAQAILIAETVAAGDLSQEFSTELQGDFG RLLSALGTMEDTLTELVGRIKQSADAIGVSAGEIDAGNGDLSRRTEEQVGALTQTAAS MEQLTATVRQNAERARSASSLAVDASSTAGRGGAVVGEVVQTMDAISASSRKIVDIIQ VIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAVAAREIKSLIQES VQQVQAGAGLVGQAGETMQEIVHSVGQVSSLLGDISHALSEQSEGIAHVNQAVAHMDG ATQHNAALVQQATQAAAALNERAGDLQQAVGAFKLDDETAGGVAANMPNMPLRLAA" misc_feature 1145749..1146489 /locus_tag="Alide2_1096" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 1145890..1146492 /locus_tag="Alide2_1096" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(1146642..1147277) /locus_tag="Alide2_1097" /db_xref="GeneID:10482123" CDS complement(1146642..1147277) /locus_tag="Alide2_1097" /inference="protein motif:TFAM:TIGR00057" /note="KEGG: dia:Dtpsy_2764 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal" /codon_start=1 /transl_table=11 /product="Sua5/YciO/YrdC/YwlC family protein" /protein_id="YP_004387019.1" /db_xref="GI:330823716" /db_xref="InterPro:IPR004388" /db_xref="InterPro:IPR006070" /db_xref="GeneID:10482123" /translation="MAQYFDIYADNPQPRLLKQAAALLSGGGILAVPTDSSYALVCRL DDKDAVDRIRRVRQINDKHHLTLLCRDLSELASYAHVDNRQYRLLKLATPGPYTFLLD ATKEVPRRVSHPQRKTIGLRVPDRKGLQMLLELHGTPLLATTLIPAGEAEPLNDPQEI RERYEKQIDGIIDAGACPLEPTTVLDLTPMSTGGDPVVVREGRGSLQALGL" misc_feature complement(1146666..1147277) /locus_tag="Alide2_1097" /note="yrdC domain; Region: Sua5_yciO_yrdC; cl00305" /db_xref="CDD:185891" gene complement(1147283..1148251) /locus_tag="Alide2_1098" /db_xref="GeneID:10482124" CDS complement(1147283..1148251) /locus_tag="Alide2_1098" /inference="protein motif:PFAM:PF02811" /note="KEGG: dia:Dtpsy_2763 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal" /codon_start=1 /transl_table=11 /product="PHP domain-containing protein" /protein_id="YP_004387020.1" /db_xref="GI:330823717" /db_xref="GO:0003824" /db_xref="InterPro:IPR003141" /db_xref="InterPro:IPR004013" /db_xref="GeneID:10482124" /translation="MSCCYIFGGSGGNQASTATCTWHASYNGPVPQSLNADLHCHSVV SDGTLTPEQLAARAHANGVQLWALTDHDEIGGQHRAAAAAHALGMDYLTGTEISVTFA NTTVHIVGLGFDADDARLAQGLAATRGGRGERAREIARQLAQAGIAGTYEGALCYVEN PELISRTHFARYLVETGVCRDMGEVFRKYLTEGKPGYVPHRWATLGHAVRWIRDAGGV AVIAHPARYRFTANEEYALFSEFRQHGGQGVEVVTGSHTSAEYRTYAAMAQEFSLAAS RGSDFHSPYESHTDIGTLPDLPAHLTPVWELLDHQILRAPQRPVAV" misc_feature complement(1147400..1148152) /locus_tag="Alide2_1098" /note="Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]; Region: COG0613" /db_xref="CDD:30958" misc_feature complement(1147955..1148143) /locus_tag="Alide2_1098" /note="DNA polymerase alpha chain like domain; Region: POLIIIAc; smart00481" /db_xref="CDD:128757" gene 1148336..1150099 /locus_tag="Alide2_1099" /db_xref="GeneID:10482125" CDS 1148336..1150099 /locus_tag="Alide2_1099" /inference="protein motif:PFAM:PF00015" /note="KEGG: ajs:Ajs_3430 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_004387021.1" /db_xref="GI:330823718" /db_xref="GO:0004871" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="GeneID:10482125" /translation="MHLNHLPVARRLWALVLGLTASLLLLSGGLMAYMMHLDDDALHI VQANEDRISLILRWKGLTALAADQSVGALSSADEHLSARLQQKVREGIEVINVLQKQI EAAAFSTEGKALLERVAQARKVVLNLLAEGARLRAEGDLAGTLSLVDSKFTPALARYV GEQDAYLQLQERQRDAAKAQAAAQRQRALWLCLAIVLVVVALGMVLANLLVRSITRPL ARAVGLAEAIAAGDLTQDVHDDRRDELGHLLRSLSAMGARLRGVVGEVRSGVESVSAA ASQIATGNQDLSARTEQTAANLEQTAASMEELTSTVTQSADTARQANQLAANAAQVAE QGGQVMGQVVTSMQQITDSSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF AVVAGEVRGLAQRSAEAAKEIKQLITTSVDNVESGSVQVAQAGQSMQDIVHSVRRVSD LIGEITASSTEQRDGIGQVNQAVANLDQMTQQNAALVEEASAAAAAMSEQAQRLSQVV AVFNVGASAAAAAPRVAPRQPVAATQAKAKAKVPAAAPQPPQVAKAAPAPQPKPAAAP ARIADARTPVTAGADDDWESF" sig_peptide 1148336..1148434 /locus_tag="Alide2_1099" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.784) with cleavage site probability 0.782 at residue 33" misc_feature <1148969..1149112 /locus_tag="Alide2_1099" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 1149383..1149784 /locus_tag="Alide2_1099" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(1150160..1151875) /locus_tag="Alide2_1100" /db_xref="GeneID:10482126" CDS complement(1150160..1151875) /locus_tag="Alide2_1100" /inference="protein motif:TFAM:TIGR00644" /note="KEGG: ajs:Ajs_3424 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1" /codon_start=1 /transl_table=11 /product="single-stranded-DNA-specific exonuclease RecJ" /protein_id="YP_004387022.1" /db_xref="GI:330823719" /db_xref="GO:0008409" /db_xref="InterPro:IPR001667" /db_xref="InterPro:IPR003156" /db_xref="InterPro:IPR004610" /db_xref="GeneID:10482126" /translation="MKIIAREIPPRAAWALEQAGVHPLLARLYAARGIRAKEELDDAL ARLLPPDTLKGAREAATLLADAIAQDKRLAIVADYDCDGATACAVGVRGLKLLGARHV QYLVPDRVVDGYGLTASIARRVAQQGADVLITVDNGIASVEGVAEAKALGLAVLVTDH HLPGPQLPAADAIVNPNQPGCGFESKSMAGVGVMFYVLIQLRAELRARGRFDQASQPR LEPLLPLVALGTVADVVRLDNNNRRLVAQGLKRMRAGQMQPGIQALFDAAGRKAQAAT TFDFGFALGPRINAAGRLADMTLGIECLLTDDDARAAELARQLDAINRERRELEGGMR EQALLLAESLFDESEEPPPAISVFDPDFHEGVVGIVASRLKDKLHRPSFVFATSGAPG REHELKGSGRSIAGFHLRDALDLVAKRHPGVILKFGGHAMAAGCTVAAEHFAAFEQAF AQVAQEWLDAATLTRRLETDGPLAPEYCRAELVDQLHREVWGQGFAPPTFSEEVQVLS QRLVGEARNHLSLKLLHQGRPVDAIWFGHTEQLPERALLAFRLDVNEWRGERRVQFLV EGVQL" misc_feature complement(1150175..1151821) /locus_tag="Alide2_1100" /note="ssDNA exonuclease RecJ; Provisional; Region: PRK11070" /db_xref="CDD:182944" misc_feature complement(1151183..1151680) /locus_tag="Alide2_1100" /note="DHH family; Region: DHH; pfam01368" /db_xref="CDD:189957" misc_feature complement(<1150565..1150741) /locus_tag="Alide2_1100" /note="DHHA1 domain; Region: DHHA1; pfam02272" /db_xref="CDD:190268" gene complement(1151872..1152822) /locus_tag="Alide2_1101" /db_xref="GeneID:10482127" CDS complement(1151872..1152822) /locus_tag="Alide2_1101" /inference="protein motif:PFAM:PF10143" /note="PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: dia:Dtpsy_2757 hypothetical protein" /codon_start=1 /transl_table=11 /product="2,3-bisphosphoglycerate-independent phosphoglycerate mutase" /protein_id="YP_004387023.1" /db_xref="GI:330823720" /db_xref="InterPro:IPR019304" /db_xref="GeneID:10482127" /translation="MSSSLHLLIAYADSPAPECRRASQDLALPQLERLLGRLAPADGD HGSETDFSPPHERALARHLGLPARPQGTTPWAAWEQSRTPAGAQGQAWAFVSPCQWQV GMDQCVLSDPAQLRLDEAQSRALLALLAPWFEQDGITLAYDQPTRWLARGALFADLAT ASLDRVLQRDVRPWLADSAAARTLHRLHSEVQMLLYTHPFNDARAAQGLPPVNAFWVH GAGALPEPPAATTAPEMPTTLRDAALRGDWRAWSEAWQALDAGPVARLAAHVAQGGAA RLTLCGERSAVSWHTAPRGLGRRIQSLLRPQRFASVREQL" misc_feature complement(<1152175..1152747) /locus_tag="Alide2_1101" /note="Sulfatase; Region: Sulfatase; cl10460" /db_xref="CDD:195965" gene 1152919..1154172 /locus_tag="Alide2_1102" /db_xref="GeneID:10482128" CDS 1152919..1154172 /locus_tag="Alide2_1102" /inference="protein motif:TFAM:TIGR02212" /note="manually curated; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; KEGG: dia:Dtpsy_2755 lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease" /codon_start=1 /transl_table=11 /product="lipoprotein releasing system, transmembrane protein, LolC/E family" /protein_id="YP_004387024.1" /db_xref="GI:330823721" /db_xref="InterPro:IPR003838" /db_xref="InterPro:IPR011925" /db_xref="GeneID:10482128" /translation="MQIPYELALGWRYTRAGRATRRNGFISFISGVSMLGIALGVAAL IIVLSVMNGFQKEVRDRMLSVVSHIEIFAPGGAALPDPQRTLAEARANPNVIGAAPFV AAQALLARGEDMKGVLVRGIDPAREPEVTDLAAESVQGLQALAPGGFRVVLGSELARQ LGVQAGDVVTLIAPSGQVTPAGVVPRLKQMTVAGTFNSGHYEYDSALVLMHHEDAERI FRLEGPTGVRLKLEDLHAAPEVAQQLAHSLSGDLLIRDWTQQNKTWFAAVQLEKRMMF IILTLIVAVAAFNLVSTLVMTVTDKRADIAILRTLGASPQSIMGVFVVQGAMVGVIGT LGGLLLGLGIAFNIDVIVPAIERALHTTFLPQDIYLISRMPSEPQSGDIVPIAVISLV LAFIATLYPSWRASRVNPAEALRYE" misc_feature 1152928..1154169 /locus_tag="Alide2_1102" /note="LolC/E family; Region: lolCE; TIGR02212" /db_xref="CDD:162764" misc_feature 1153327..1153554 /locus_tag="Alide2_1102" /note="Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum-; Region: MopB_CT; cl09929" /db_xref="CDD:158784" misc_feature 1153744..1154148 /locus_tag="Alide2_1102" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 1154165..1154851 /locus_tag="Alide2_1103" /db_xref="GeneID:10482129" CDS 1154165..1154851 /locus_tag="Alide2_1103" /EC_number="3.6.3.28" /inference="protein motif:TFAM:TIGR02211" /note="SMART: ATPase, AAA+ type, core; TIGRFAM: Lipoprotein releasing system, ATP-binding protein; KEGG: dia:Dtpsy_2754 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-like" /codon_start=1 /transl_table=11 /product="lipoprotein releasing system, ATP-binding protein" /protein_id="YP_004387025.1" /db_xref="GI:330823722" /db_xref="GO:0005524" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011924" /db_xref="GeneID:10482129" /translation="MNESTNGIVLQARGLAKRFTEGRLDVSVLRGVDLQVRAGETLAI VGASGSGKSTLLHLLGGLDAPTAGTVTLKGQVLGALSPGAQGRLRNAHLGFIYQFHHL LPEFSAQDNVAMPLRIRRAPYAQCIAQAVQMLQAVGLAERVHHRPSELSGGERQRVAI ARALVTRPACVLADEPTGNLDRATADAVFQLMLRLAREQGTAFVMVTHDETLAARCDQ VARLVSGVLE" misc_feature 1154189..1154845 /locus_tag="Alide2_1103" /note="lipoprotein releasing system, ATP-binding protein; Region: LolD_lipo_ex; TIGR02211" /db_xref="CDD:131266" misc_feature 1154192..1154845 /locus_tag="Alide2_1103" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature 1154300..1154323 /locus_tag="Alide2_1103" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature order(1154309..1154314,1154318..1154326,1154456..1154458, 1154684..1154689,1154786..1154788) /locus_tag="Alide2_1103" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature 1154447..1154458 /locus_tag="Alide2_1103" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature 1154612..1154641 /locus_tag="Alide2_1103" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature 1154672..1154689 /locus_tag="Alide2_1103" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature 1154696..1154707 /locus_tag="Alide2_1103" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature 1154774..1154794 /locus_tag="Alide2_1103" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene complement(1154980..1155282) /locus_tag="Alide2_1104" /db_xref="GeneID:10482130" CDS complement(1154980..1155282) /locus_tag="Alide2_1104" /inference="protein motif:PFAM:PF00034" /note="PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_0985 cytochrome c class I" /codon_start=1 /transl_table=11 /product="cytochrome c class I" /protein_id="YP_004387026.1" /db_xref="GI:330823723" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10482130" /translation="MKRTLITLAMALSVAAPAMADEAMAKSKNCMACHAIDKKLVGPA YKEVAKKYAGKGAEATLVQHVLKGSSGVWGPVPMPANAQVNEAEAKQLVSWILSLK" sig_peptide complement(1155220..1155282) /locus_tag="Alide2_1104" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 21" misc_feature complement(1154983..>1155207) /locus_tag="Alide2_1104" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 1155390..1155632 /locus_tag="Alide2_1105" /db_xref="GeneID:10482131" CDS 1155390..1155632 /locus_tag="Alide2_1105" /inference="similar to AA sequence:KEGG:Dtpsy_0986" /note="KEGG: dia:Dtpsy_0986 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387027.1" /db_xref="GI:330823724" /db_xref="GeneID:10482131" /translation="MYALLLGVLLMLLKYLEIGPVANWSWWWVLSPFAVAAAWWAWAD ATGYTKRKAMEKMEERKKNRIDRHKEALGMRPRRPR" gene complement(1155657..1157348) /locus_tag="Alide2_1106" /db_xref="GeneID:10482132" CDS complement(1155657..1157348) /locus_tag="Alide2_1106" /EC_number="4.2.1.9" /inference="protein motif:TFAM:TIGR00110" /note="TIGRFAM: Dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0987 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase" /codon_start=1 /transl_table=11 /product="dihydroxy-acid dehydratase" /protein_id="YP_004387028.1" /db_xref="GI:330823725" /db_xref="GO:0004160" /db_xref="InterPro:IPR000581" /db_xref="InterPro:IPR004404" /db_xref="GeneID:10482132" /translation="MTDPMPLNRRSAHITQGKARAPNRSMYYGMGYAEADFDKPMVGV ANGHSTITPCNSGLQRLADAAIEGIREAGGNPQVFGTPTISDGMAMGTEGMKYSLVSR EVIADCVETCVQGQWMDGCVVIGGCDKNMPGGMMGMLRANVPSIYVYGGTILPGSLHG CDLNIVSVFEAVGENAAGKISDRELKDIEQHAIPGTGSCGGMYTANTMSSAFEALGMS LPYSSTMANPHQEKADSAKESAKVLIEAIRRDLKPRDIVTRKAIENAVAVIMAVGGST NAVLHFLAIAHAAGVDWSIDDFERMRQKVPVFCDLKPSGRYLAVDLHRAGGIPQVMKM LLNAGLLHGDCMTITGRTIAETLKDVPGQPRADQDVIRPIDKPLYGHGHLAILKGNLS PEGAVAKITGLKNPVITGPARVFDDEQSALAAILDGKIKAGDVMVLRYLGPKGGPGMP EMLAPTGALIGQGLGESVGLITDGRFSGGTWGMVVGHVAPEAFVGGTIALVHEGDSIT IDAHRLLLQLNVGDDELARRRAGWTPPAPRYTRGVQAKFAFNAASASKGAVLDLF" misc_feature complement(1155720..1157324) /locus_tag="Alide2_1106" /note="Dehydratase family; Region: ILVD_EDD; cl00340" /db_xref="CDD:185921" misc_feature complement(1155723..1157258) /locus_tag="Alide2_1106" /note="dihydroxy-acid dehydratase; Region: ilvD; TIGR00110" /db_xref="CDD:161713" gene 1157577..1159433 /locus_tag="Alide2_1107" /db_xref="GeneID:10482133" CDS 1157577..1159433 /locus_tag="Alide2_1107" /EC_number="4.2.1.9" /inference="protein motif:TFAM:TIGR00110" /note="TIGRFAM: Dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0988 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase" /codon_start=1 /transl_table=11 /product="dihydroxy-acid dehydratase" /protein_id="YP_004387029.1" /db_xref="GI:330823726" /db_xref="GO:0004160" /db_xref="InterPro:IPR000581" /db_xref="InterPro:IPR004404" /db_xref="GeneID:10482133" /translation="MPAYRSKTSTAGRNMAGARSLWRATGMKDEDFSKPIIAVVNSFT QFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRDIIAD SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPVIFVSGGPMEAGKAKLAVPGT STVQFKKLDLIDAMVMAADDKVSDADLAEAERNACPTCGSCSGMFTANSMNCLTEALG LSLPGNGTVVATHADREQLFKRAGRRIVELARQYYEQGDERILPRSVGFKAFENAMTL DIAMGGSTNTILHLLAIAQEAGIAFTMQDIDRLSRVVPQLCKVAPNTDKYHIEDVHRA GGIMAILGELERAGRLHTDVPTVHARTLGEALAQWDITRTGDEAVKTFYMAGPGGVPS QVAFSQNARWPSLDLDRAAGCIRSYDHAFSKEGGLAVLTGNIARDGCVVKTAGVHESI LVFEGPAHVVESQDEAVEHILADQVKAGDVVVVRYEGPKGGPGMQEMLYPTSYIKSKG LGKACALLTDGRFSGGTSGLSIGHCSPEAAAGGAIGLVRNGDRIRIDIPNRTIDVLVS DEELARRRAEQDAKGWKPAQPRPRKVSAALKAYAKLVTSADKGAVRDLSLLD" misc_feature 1157580..1159430 /locus_tag="Alide2_1107" /note="Dehydratase family; Region: ILVD_EDD; cl00340" /db_xref="CDD:185921" misc_feature 1157646..1159415 /locus_tag="Alide2_1107" /note="dihydroxy-acid dehydratase; Region: ilvD; TIGR00110" /db_xref="CDD:161713" gene 1159574..1160002 /locus_tag="Alide2_1108" /db_xref="GeneID:10482134" CDS 1159574..1160002 /locus_tag="Alide2_1108" /inference="protein motif:TFAM:TIGR00369" /note="KEGG: dia:Dtpsy_0989 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily" /codon_start=1 /transl_table=11 /product="phenylacetic acid degradation-like protein" /protein_id="YP_004387030.1" /db_xref="GI:330823727" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10482134" /translation="MNPLHERIAASFDAQGLMRTLGARLVLVQDGEVHIEMPFSGHLS QQQGFVHAGAVTSIVDNACGYAALTRSAPGCEVVTAEFKTNFMRPAIGERFVAVGKVQ SAGRMLTVCSGEVRAFAGAGPDYKVVALMQATMVSVPAGS" misc_feature 1159631..1159981 /locus_tag="Alide2_1108" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(1159721..1159723,1159808..1159810,1159829..1159840) /locus_tag="Alide2_1108" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(1159724..1159726,1159730..1159732,1159739..1159741, 1159811..1159825,1159829..1159831) /locus_tag="Alide2_1108" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(1159727..1159729,1159751..1159756,1159763..1159768, 1159808..1159810) /locus_tag="Alide2_1108" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(1160005..1160472) /locus_tag="Alide2_1109" /db_xref="GeneID:10482135" CDS complement(1160005..1160472) /locus_tag="Alide2_1109" /inference="protein motif:TFAM:TIGR00754" /note="KEGG: dia:Dtpsy_0990 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein" /codon_start=1 /transl_table=11 /product="bacterioferritin" /protein_id="YP_004387031.1" /db_xref="GI:330823728" /db_xref="GO:0008199" /db_xref="InterPro:IPR002024" /db_xref="InterPro:IPR008331" /db_xref="GeneID:10482135" /translation="MQGHPDVIDCLKDLLRGELAARDQYFIHSRQYQHQGFVRLYERM DHEMQEETQHADAILRRILLLEGEPDMRPNAFTPGATVPEMLRKDLDTEYGVRTHLKA AIALCETHSDYVSRDMLRAQLQDTEEDHAYWLEKQIGLIDKMGLQNYLQSQAD" misc_feature complement(1160011..1160469) /locus_tag="Alide2_1109" /note="Bacterioferritin, ferritin-like diiron-binding domain; Region: Bacterioferritin; cd00907" /db_xref="CDD:153099" misc_feature complement(1160041..1160451) /locus_tag="Alide2_1109" /note="Ferritin-like domain; Region: Ferritin; pfam00210" /db_xref="CDD:189451" misc_feature complement(order(1160305..1160307,1160317..1160319, 1160338..1160340,1160383..1160385,1160404..1160406, 1160428..1160430)) /locus_tag="Alide2_1109" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:153099" misc_feature complement(order(1160092..1160097,1160173..1160175, 1160185..1160187,1160194..1160199,1160311..1160313, 1160320..1160322,1160398..1160400,1160410..1160415, 1160419..1160424)) /locus_tag="Alide2_1109" /note="ferroxidase pore; other site" /db_xref="CDD:153099" misc_feature complement(order(1160083..1160085,1160092..1160094, 1160173..1160175,1160194..1160196,1160311..1160313, 1160320..1160322,1160398..1160400,1160419..1160421)) /locus_tag="Alide2_1109" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153099" gene 1160572..1161387 /locus_tag="Alide2_1110" /db_xref="GeneID:10482136" CDS 1160572..1161387 /locus_tag="Alide2_1110" /inference="protein motif:TFAM:TIGR00544" /note="KEGG: dia:Dtpsy_0991 prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase" /codon_start=1 /transl_table=11 /product="prolipoprotein diacylglyceryl transferase" /protein_id="YP_004387032.1" /db_xref="GI:330823729" /db_xref="GO:0008199" /db_xref="InterPro:IPR001640" /db_xref="GeneID:10482136" /translation="MLMYPHIDPVALQIGPVAVHWYGLTYLAGFALFMFLGLRRLRHE PYASLAGEQAWTRKDVEDILFLGVLGVVVGGRLGYCLFYKPGYYLTHPLEILYVWQGG MSFHGGLLGVVASMLWFAHSRRKPWLQVADFVAPCVPTGLAAGRIGNFINGELWGRFS APDLPWGMVFPQSGSMLPRHPSQIYQFLLEGLLLFTLLWLYARRPRRRGEVAAAFLVG YGALRFTAEYFREPDSFLGLLSLGMSMGQWLCVPMIVAGAGLWIWARRQPAGS" misc_feature 1160572..1161375 /locus_tag="Alide2_1110" /note="Prolipoprotein diacylglyceryl transferase; Region: LGT; cl00478" /db_xref="CDD:193836" gene 1161596..1162264 /locus_tag="Alide2_1111" /db_xref="GeneID:10482137" CDS 1161596..1162264 /locus_tag="Alide2_1111" /inference="protein motif:PFAM:PF07729" /note="KEGG: dia:Dtpsy_0992 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004387033.1" /db_xref="GI:330823730" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10482137" /translation="MRSVANSLHDQAAEMLRGLIFAGELAPGTFLDEAALCERLAVSR TPLREALKVLAAEGLVRHEPRRGCFVAEITERDVQKIFPVIALLEGRAAYEATERAAA ADIAALEVLHQRLREHAEAGRITEYYEVNYAIHEAFITLADNHWLAQTIGGLRRILRL ARHQTLHVPGRLRQSLSEHLAMFDALKRGDAAAAEASMRNHLMAQRDALNALARNSPS RIAP" misc_feature 1161614..1162258 /locus_tag="Alide2_1111" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature 1161614..1161808 /locus_tag="Alide2_1111" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(1161614..1161616,1161620..1161622,1161689..1161691, 1161692..1161697,1161719..1161733,1161737..1161742, 1161749..1161751,1161779..1161784,1161788..1161799) /locus_tag="Alide2_1111" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature <1161926..1162207 /locus_tag="Alide2_1111" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene 1162261..1163688 /locus_tag="Alide2_1112" /db_xref="GeneID:10482138" CDS 1162261..1163688 /locus_tag="Alide2_1112" /EC_number="4.1.1.9" /inference="protein motif:PRIAM:4.1.1.9" /note="KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase" /codon_start=1 /transl_table=11 /product="Malonyl-CoA decarboxylase" /protein_id="YP_004387034.1" /db_xref="GI:330823731" /db_xref="InterPro:IPR007956" /db_xref="GeneID:10482138" /translation="MNAATTWISRSVDRLRPGADKKEKEPAAERSTHERLQASLRKSG EALSPRALRRMLADLQDVVAPRVSEIEGGRRAQAVADWYAGAEPAERRDMWLLMCEQF APDATRFKSAQQRYEAAAGTADAPQAEAHLRRALVSPRTRLLQRFAVFPDGMRFLVDL RAELLPLLKSDKRLLPLEAELEQLFATWFDVAFLELRRLSWDSPASLIEKLIKYEAVH DIRSWADLKNRLDSDRRCYGFFHPRLPNEPLIFVEVALVNEISESITPLLDESAEAAD IQRATTAIFYSISSTQTGLRGVSFGDSLIKHVAETLTEEFPRLRTFATLSPIPGFRSW LAKQGAAQLERLDEKQRVELGRAVGFMPPQIAHVLAAADKALELPPKSPVRQLLQQCA ARYLGRELQDGKPLDAVARFHLGNGARVERLNWAADPSAKGMKQSFGMMVNYLYDLKR IDKHRALLEEGRVPVSGDIESLCGD" misc_feature 1162558..1163601 /locus_tag="Alide2_1112" /note="Malonyl-CoA decarboxylase (MCD); Region: MCD; pfam05292" /db_xref="CDD:114040" gene 1163752..1164774 /locus_tag="Alide2_1113" /db_xref="GeneID:10482139" CDS 1163752..1164774 /locus_tag="Alide2_1113" /inference="similar to AA sequence:KEGG:Dtpsy_0994" /note="KEGG: dia:Dtpsy_0994 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387035.1" /db_xref="GI:330823732" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10482139" /translation="MQERDDTQRFTDMPRRRDMLRAAGAAGLAAAAGGAWAQGASTWP SKPVTLIVPFPAGGGTDAFARPLAAQFSKSTGKTLVIDNRGGAGGTVGASIAAKAHPD GYTLFMGGAHHVIAPSVYPRLDYDIEKDFVPLALLASVPQVVVVNPRNVKANTIQELL AMVKSSPGKFNYASAGSGSSHHLAGELFKIQTGTFITHIPYRGAGPALQDLIGGNVDM MFDGLGSSAGHIKGGRIKALMVAGSKRNPAFPDVPCAAEVGLPDYNVSTWYGLWTPKG TPPDVQARIVEEIRKLGASDEIKAIWAGNGAEFGTLSPQDFGKMIGSEVKRWAQVVKA SGAKIE" sig_peptide 1163752..1163865 /locus_tag="Alide2_1113" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.955) with cleavage site probability 0.953 at residue 38" misc_feature 1163875..1164759 /locus_tag="Alide2_1113" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1163941..1164762 /locus_tag="Alide2_1113" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1164784..1165605 /locus_tag="Alide2_1114" /db_xref="GeneID:10482140" CDS 1164784..1165605 /locus_tag="Alide2_1114" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: ajs:Ajs_1079 enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387036.1" /db_xref="GI:330823733" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482140" /translation="MAGEVVAALAALEGPDRGIVRVALRSEGRLNAMSRAMWRQLCSV FESVQRSADARCVLIEGEDGAFCAGGDISEYPAFRFDPASLRDFHENDVWGGLSAMLA CDVPIVACIDGACMGAGVEIASCCDIRIAATGARFGAPIARLGFPMAPREARLVAGAV GETTARQMLLEAATFSAAEMAQRGFLSRVVEPALLRAQALGTARRIAALAPGAARLNK QTLRALKAQDMPKTPVHQAQTAIDTVANPDPYAYAASAEHREGIAAFLDKRPPNF" misc_feature 1164829..1165602 /locus_tag="Alide2_1114" /note="enoyl-CoA hydratase; Provisional; Region: PRK06144" /db_xref="CDD:180424" misc_feature 1164829..1165383 /locus_tag="Alide2_1114" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1164871..1164873,1164877..1164879,1164973..1164975, 1164985..1164999,1165123..1165125,1165129..1165137, 1165201..1165206,1165213..1165215) /locus_tag="Alide2_1114" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1164991..1164993,1165135..1165137) /locus_tag="Alide2_1114" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1165075..1165077,1165099..1165101,1165162..1165173, 1165207..1165218,1165234..1165236,1165240..1165248, 1165252..1165257,1165270..1165275,1165279..1165284, 1165288..1165293,1165300..1165302,1165333..1165335, 1165342..1165344) /locus_tag="Alide2_1114" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1165616..1167169 /locus_tag="Alide2_1115" /db_xref="GeneID:10482141" CDS 1165616..1167169 /locus_tag="Alide2_1115" /EC_number="6.2.1.26" /inference="protein motif:PRIAM:6.2.1.26" /note="KEGG: dia:Dtpsy_0996 malonyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="YP_004387037.1" /db_xref="GI:330823734" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10482141" /translation="MQSDNLFSALRAAFPSDLDQIAVEAASASGEPLLYTWRDLDRAS ARIANLLASLKLPEGSRIAVQVEKSVEAMLLYLATLRAGYVFLPLNTAYQSAEIEYFV GNAEPAVVVCTPGNFSWVSRIAFTAGTQHVFTLGDDRTGTLLERAAHFGDEHAPAVRK ADDLAAILYTSGTTGRSKGAMLTHGNLLSNARVLKDYWGWKPGDVLIHALPIFHVHGL FVAIHGALINGSRMIWMAKFDPKAAIAAMQRATVFMGVPTLYVRMLAEPALTKAAVSH MRLFISGSAPLLIETFKEWQDRTGHTILERYGMSETIMLTSNPCTADARHGGQSERRG GTVGFALPGVGLRVVDDAGKEVPVGEIGNIQVRGPNVFKGYWRMPEKTKEEFSTDGWF KTGDVGEVDERGYVSIVGRSKDLIISGGYNVYPAEIEGYINEMPGVAESALVGVPHPD FGEVGVAVVIPRPGVALDGEAIIAQLKSQLANFKIPKRCFVATELPRNTMGKVQKNLL REQYKGLFA" misc_feature 1165622..1167166 /locus_tag="Alide2_1115" /note="malonyl-CoA synthase; Validated; Region: PRK07514" /db_xref="CDD:181011" misc_feature 1165718..1167157 /locus_tag="Alide2_1115" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(1167279..1167722) /locus_tag="Alide2_1116" /db_xref="GeneID:10482142" CDS complement(1167279..1167722) /locus_tag="Alide2_1116" /inference="protein motif:PFAM:PF00582" /note="PFAM: UspA; KEGG: dia:Dtpsy_0997 UspA domain protein" /codon_start=1 /transl_table=11 /product="UspA domain-containing protein" /protein_id="YP_004387038.1" /db_xref="GI:330823735" /db_xref="InterPro:IPR006016" /db_xref="GeneID:10482142" /translation="MYKRILIATDGSPLSETAVQTGLSLAGLTGASVIALKVVPRYPR SYFDGGLPVDAAEVKRIEKQWSDAAQELVNKVKLRGSNEGVSVKAVVAKSDLVAEAVI AAAKKHNCDLIVMASHGRKGLKRLLLGSETQHVLTHSHIPVLVLR" misc_feature complement(1167285..1167713) /locus_tag="Alide2_1116" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(1167327..1167338,1167366..1167371, 1167375..1167380,1167609..1167611,1167693..1167701)) /locus_tag="Alide2_1116" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene 1167885..1170221 /locus_tag="Alide2_1117" /db_xref="GeneID:10482143" CDS 1167885..1170221 /locus_tag="Alide2_1117" /EC_number="3.6.3.4" /inference="protein motif:TFAM:TIGR01525" /note="TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_0998 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_004387039.1" /db_xref="GI:330823736" /db_xref="GO:0005524" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="GeneID:10482143" /translation="MSDATALLDDPQEWSAFGRLCGAATEGELPADGRWESHVVLEGM HCAACALTIEDALRQVPGVAEADVSAATRRARVVWSPGQVLPSQWMEAVRKAGYRAMP AMDAFVREQRQRESRRALWRWLVAGFCMMQVMMYAWPAYQAMPGDLTAEMEQLLRWAS WVISLPVVLFACGPFFSSALRDIRQRRVSMDLPVALGMLITFVVSMIGTFDPTGPFGR EVYYDSLTMFVFFLLTGRWLELRLRNRTAGALEAVMNRLPDSVERRTAEGGFVRVATR RLQVGDVVRVLPGEAFPADGRILAGSTQADEALLTGESTPVGKSPGSTVTAGSHNLRS AVEVAVDALGAQTRFGQIVALMEAASLQKPRLAQLADRVARPFLVGVLLAALLAAVWW WPTDPSHALMVAVAVLVVTCPCALSLATPVAMLTTAGTLARGGVLVRNLQALEALATV DTVVFDKTGTLTHDRMAVSGTRVAPGAGLTPEQALGLAAMLARHSFHPVSRALVAAAA ETEKPSLPWTLDEVQELPGAGLQARAWQMGQQEVILRLGSAAHARVAPMEGQQVVLSA ERAGQVAELARFALSEALRPEAASVVRQLRSAGIDVQLLSGDRSAAVQGVAARAGIDV AHGDCTPQDKLQRLQALQAGGHCVAMVGDGLNDGPVLAGAHASFAFGKAVPLAQSRSD IVVLGDNLAPVALTLLLARRTLRIVRQNLWWAAGYNAVGVPLAIAGYMPAWLAGLGMA LSSLLVVMNAARLARIPGGDAVAISQPAHSTPMPVEVA" misc_feature 1167999..1168184 /locus_tag="Alide2_1117" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature 1168005..1170152 /locus_tag="Alide2_1117" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature order(1168014..1168022,1168029..1168031) /locus_tag="Alide2_1117" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature 1168563..1169222 /locus_tag="Alide2_1117" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature 1169430..1169939 /locus_tag="Alide2_1117" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 1170224..1170361 /locus_tag="Alide2_1118" /db_xref="GeneID:10482144" CDS 1170224..1170361 /locus_tag="Alide2_1118" /inference="protein motif:TFAM:TIGR00847" /note="KEGG: dia:Dtpsy_0999 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type" /codon_start=1 /transl_table=11 /product="cytochrome oxidase maturation protein, cbb3-type" /protein_id="YP_004387040.1" /db_xref="GI:330823737" /db_xref="InterPro:IPR004714" /db_xref="GeneID:10482144" /translation="MDILYLLIPLSVVLVLFVLAGLWWAVYRGQFENIDQEGERILRN D" sig_peptide 1170224..1170286 /locus_tag="Alide2_1118" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.675) with cleavage site probability 0.668 at residue 21" misc_feature 1170227..1170358 /locus_tag="Alide2_1118" /note="Cytochrome oxidase maturation protein cbb3-type; Region: CcoS; cl01253" /db_xref="CDD:194083" gene 1170428..1171867 /locus_tag="Alide2_1119" /db_xref="GeneID:10482145" CDS 1170428..1171867 /locus_tag="Alide2_1119" /EC_number="1.9.3.1" /inference="protein motif:TFAM:TIGR00780" /note="TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: dia:Dtpsy_1000 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, cbb3-type subunit I" /protein_id="YP_004387041.1" /db_xref="GI:330823738" /db_xref="GO:0004129" /db_xref="InterPro:IPR000883" /db_xref="InterPro:IPR004677" /db_xref="GeneID:10482145" /translation="MESSQTKVAHYDDTVVRQFTIMAVVWGVVGMLVGVFIAAQLTWP ELNFGIPWLSYGRLRPLHTNAVIFAFGGCGLFATSYYVVQRTSQARLFMPKLASFTFW AWQAVIVAAAISLPLGYTSGKEYAELEWPIDILIAVTWVSYAIVFFGTVGTRKVKHIY VANWFFGAFIIAVALLHIVNSAAIPAGWMKSYSAYAGVQDAMVQWWYGHNAVGFYLTT GFLGMMYYFIPKQAGRPVYSYRLSIVHFWALIFTYMWAGPHHLHYTALPDWTQSVGMV FSLILLAPSWGGMINGMMTLSGAWHKLRDDPILRFLIVSLSFYGMSTFEGPMMSIKTV NALSHYTDWTVGHVHSGALGWVGLITMGSLYYLVPRLFGKDKMHSIKAIELHFWMATI GIVLYIAAMWIAGVMQGLMWRAVNTDGTLTYTFVESVKATYPFYAIRFFGGLLYLSGM VLMAWNVWMTAISGRAVKVAIPAVKAAHA" misc_feature 1170458..1171810 /locus_tag="Alide2_1119" /note="Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the...; Region: cbb3_Oxidase_I; cd01661" /db_xref="CDD:29932" misc_feature order(1170479..1170481,1171472..1171474,1171484..1171486, 1171616..1171618,1171727..1171729) /locus_tag="Alide2_1119" /note="Low-spin heme binding site [chemical binding]; other site" /db_xref="CDD:29932" misc_feature order(1171013..1171015,1171028..1171033,1171430..1171432, 1171442..1171447,1171661..1171663) /locus_tag="Alide2_1119" /note="Putative water exit pathway; other site" /db_xref="CDD:29932" misc_feature order(1171052..1171054,1171202..1171207,1171466..1171468) /locus_tag="Alide2_1119" /note="Binuclear center (active site) [active]" /db_xref="CDD:29932" misc_feature order(1171205..1171207,1171442..1171447,1171661..1171666) /locus_tag="Alide2_1119" /note="Putative proton exit pathway; other site" /db_xref="CDD:29932" gene 1171887..1172519 /locus_tag="Alide2_1120" /db_xref="GeneID:10482146" CDS 1171887..1172519 /locus_tag="Alide2_1120" /inference="protein motif:TFAM:TIGR00781" /note="KEGG: dia:Dtpsy_1001 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, cbb3-type subunit II" /protein_id="YP_004387042.1" /db_xref="GI:330823739" /db_xref="InterPro:IPR003468" /db_xref="GeneID:10482146" /translation="MSNTQNNTSSGFTHEKVETSNFLMIVLILLVVAIGGLVEIVPLF FQKSTTEAVQGLKPYTPLQLAGRDIYVREGCYNCHSQMIRPFRAETLRYGHYSVAGEF VYDHPFQWGSKRTGPDLHRVGGKYSDEWHRIHLNNPRDVVPESNMPAYPWLEKTQLDP AVSAPHMKALRTVGVPYTDEEIAGAAEQVKGKTEMDALVAYLQVLGRTLR" misc_feature 1171926..1172516 /locus_tag="Alide2_1120" /note="Cytochrome C oxidase, mono-heme subunit/FixO; Region: FixO; cl01130" /db_xref="CDD:186349" gene 1172540..1172677 /locus_tag="Alide2_1121" /db_xref="GeneID:10482147" CDS 1172540..1172677 /locus_tag="Alide2_1121" /inference="similar to AA sequence:KEGG:Dtpsy_1002" /note="KEGG: dia:Dtpsy_1002 Cbb3-type cytochrome oxidase component" /codon_start=1 /transl_table=11 /product="Cbb3-type cytochrome oxidase component" /protein_id="YP_004387043.1" /db_xref="GI:330823740" /db_xref="InterPro:IPR008621" /db_xref="GeneID:10482147" /translation="MDITTMRIVVTLASLACFVGIWFWAFMRRNKTRFEEAAQLPFTE D" misc_feature 1172549..1172674 /locus_tag="Alide2_1121" /note="Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of...; Region: cbb3_Oxidase_CcoQ; cl00282" /db_xref="CDD:193748" gene 1172707..1173621 /locus_tag="Alide2_1122" /db_xref="GeneID:10482148" CDS 1172707..1173621 /locus_tag="Alide2_1122" /inference="protein motif:TFAM:TIGR00782" /note="KEGG: ajs:Ajs_1087 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase, cbb3-type subunit III" /protein_id="YP_004387044.1" /db_xref="GI:330823741" /db_xref="InterPro:IPR003088" /db_xref="InterPro:IPR004678" /db_xref="GeneID:10482148" /translation="MSDFTSNFWSIYVAGITIIGIIGCGLLLWITSRKKVEATADNTT GHVWDEDLTEMNNPMPRWWMWLFVLTIVFGFGYLVAYPGLGTFKGQLGWTQLGEYQQE VEKANTELQPLYARFASMTTEDMAKDPAAMAIGERLFMNNCAQCHGSDARGSKGFPSL ADGDWLHGGAPDDIRKTIHDGRVGVMPPMAAAVGSPEDVRNVTHYVLSLSGSPHDSLR ASLGKSKFAACAACHGMDGKGNAALGAPNLTDDIWLHGWGEAAITAMINNGKTNEMPA QAGKLTDAQINVLTAYVWGLSHKAGASR" misc_feature 1172833..1173603 /locus_tag="Alide2_1122" /note="cytochrome c oxidase, cbb3-type, subunit III; Region: ccoP; TIGR00782" /db_xref="CDD:129864" misc_feature 1173103..1173336 /locus_tag="Alide2_1122" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature 1173370..1173597 /locus_tag="Alide2_1122" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 1173706..1175148 /locus_tag="Alide2_1123" /db_xref="GeneID:10482149" CDS 1173706..1175148 /locus_tag="Alide2_1123" /inference="protein motif:TFAM:TIGR02745" /note="TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase accessory protein CcoG" /protein_id="YP_004387045.1" /db_xref="GI:330823742" /db_xref="InterPro:IPR014116" /db_xref="GeneID:10482149" /translation="MKPAEDRPRKVIPITPVAAESQQPETVSLYEAQKKIYPRSISGV FARWRWAMVFLTQLVFYGLPWLEWGQRQMVLFDLGARRFYIFGLVLYPQDFIYLTGLL IISALSLFLFTAVAGRLWCGFACPQTVYTEIFMWIEHKIEGDRSARMRLDNGTWTFEK IWKKSLKQVIWVAVAFWTGFTFVGYFVPIRELGGELLVLHGSWQIFWVFFYGFATYGN AGYLREQVCKYMCPYARFQSAMFDKDTLIVTYDPERGEPRGPRTKSVDYKAKGLGDCI DCTLCVQVCPTGIDIRNGLQYECIGCGLCVDACDTVMDKMKYPRGLIRFSTQNGVKNH WTQSQMLKRVLRPRVLFYTSVLIVLCIGMLASLVVRTPLKVDVVRDRAALSRIVAGGK LENIYRLQIMNATEGAQRYVISARGLPGLEVASESEVDIGPADSRWVAVRLQIPYGSA PPGSHTVYFDIQAQGNKGQVAEKSVFLVPR" misc_feature 1173838..1175136 /locus_tag="Alide2_1123" /note="cytochrome c oxidase accessory protein FixG; Region: ccoG_rdxA_fixG; TIGR02745" /db_xref="CDD:162996" misc_feature 1174792..1175142 /locus_tag="Alide2_1123" /note="Ubp3 associated protein Bre5; Region: Bre5; pfam11614" /db_xref="CDD:152050" gene 1175208..1175486 /locus_tag="Alide2_1124" /db_xref="GeneID:10482150" CDS 1175208..1175486 /locus_tag="Alide2_1124" /inference="protein motif:PFAM:PF05751" /note="PFAM: FixH; KEGG: dia:Dtpsy_1005 hypothetical protein" /codon_start=1 /transl_table=11 /product="FixH family protein" /protein_id="YP_004387046.1" /db_xref="GI:330823743" /db_xref="InterPro:IPR008620" /db_xref="GeneID:10482150" /translation="MSKDGPMNADPEPQPWWRYGHVWLIIAGPVIVVIAGFVTLWLAL SRPDPVLAEDYYQRGLDINKTLKNADSGMTPAMKGRNHAATPAQDQPR" gene 1175574..1175861 /locus_tag="Alide2_1125" /db_xref="GeneID:10482151" CDS 1175574..1175861 /locus_tag="Alide2_1125" /inference="similar to AA sequence:KEGG:Dtpsy_1006" /note="KEGG: dia:Dtpsy_1006 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387047.1" /db_xref="GI:330823744" /db_xref="GeneID:10482151" /translation="MWKQRLMWIAWPAFLMAGVMEMVVFAFVDPEALQWFDQPVTLSR QGVYTVAFFVFWAIIMASSMLTTMLSLSPFELNRCPVPEGERPLDCAKYMP" sig_peptide 1175574..1175654 /locus_tag="Alide2_1125" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.763) with cleavage site probability 0.452 at residue 27" gene complement(1175896..1176639) /locus_tag="Alide2_1126" /db_xref="GeneID:10482152" CDS complement(1175896..1176639) /locus_tag="Alide2_1126" /inference="protein motif:PFAM:PF00027" /note="KEGG: ajs:Ajs_1091 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain" /codon_start=1 /transl_table=11 /product="Crp/Fnr family transcriptional regulator" /protein_id="YP_004387048.1" /db_xref="GI:330823745" /db_xref="GO:0003700" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="GeneID:10482152" /translation="MNRVSTHSNLQSIKVACSNCNLRELCMPVGLDEQQLKRIDDVVA VRRKVKRGGTLFRNGEPFASLFAIRTGFFKTCVATEDGRDQVTGFQMAGEIIGLDGIV NDRHTCDAVALEDAEVCVMPFDRIEELSREVTALQNHVHKIMSREIVREHGVMLLLGS MRAEERLAAFLLNLVQRLHARGFSQSELVLRMTREEIGSYLGLKLETVSRTFSKFVEE GIVEVRQRHVRIVDTDALKRIVNSQQSCL" misc_feature complement(1175932..1176591) /locus_tag="Alide2_1126" /note="fumarate/nitrate reduction transcriptional regulator; Provisional; Region: PRK11161" /db_xref="CDD:183004" misc_feature complement(1176217..>1176486) /locus_tag="Alide2_1126" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature complement(order(1176316..1176324,1176346..1176351)) /locus_tag="Alide2_1126" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature complement(order(1176232..1176240,1176250..1176258)) /locus_tag="Alide2_1126" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature complement(1175944..1176153) /locus_tag="Alide2_1126" /note="helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092" /db_xref="CDD:28976" misc_feature complement(1176139..1176144) /locus_tag="Alide2_1126" /note="putative switch regulator; other site" /db_xref="CDD:28976" misc_feature complement(order(1176028..1176030,1176055..1176063, 1176067..1176069)) /locus_tag="Alide2_1126" /note="non-specific DNA interactions [nucleotide binding]; other site" /db_xref="CDD:28976" misc_feature complement(1176010..1176030) /locus_tag="Alide2_1126" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:28976" misc_feature complement(order(1176010..1176012,1176022..1176027)) /locus_tag="Alide2_1126" /note="sequence specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28976" misc_feature complement(1176022..1176027) /locus_tag="Alide2_1126" /note="putative cAMP binding site [chemical binding]; other site" /db_xref="CDD:28976" gene 1176810..1178192 /locus_tag="Alide2_1127" /db_xref="GeneID:10482153" CDS 1176810..1178192 /locus_tag="Alide2_1127" /inference="protein motif:TFAM:TIGR00538" /note="TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: dia:Dtpsy_1008 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="oxygen-independent coproporphyrinogen III oxidase" /protein_id="YP_004387049.1" /db_xref="GI:330823746" /db_xref="GO:0004109" /db_xref="InterPro:IPR004558" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR010723" /db_xref="GeneID:10482153" /translation="MTVVTTELLRRFDVPGPRYTSYPTADRFVEAFGEKEYILALQQR RVGSAAKAMPLSLYVHIPFCESLCYYCACNKIITRHPERAEVYLRYLSREIDLHTAHC GVGQHVSQLHFGGGTPTFLSDDGLRELIGMLKRSFVLVPGGEYSIEVDPRTVDEKRLA LLAELGFNRLSFGVQDFDPEVQKAVHRIQPAEKVFALIESARKLGFESVNVDLIYGLP RQTPESFDRTLAQVAQLRPDRIALYAYAHLPERFKSQRRIISAELPMASAKVSMLARS IDVFMNAGYVYVGMDHFALPEDALAVAKRQGRLHRNFQGYSTQPDCDLIALGVSAIGR VGATYSQNVKTLDEYYDAINHGHLPIVRGLALTRDDLVRRAVIMALMCQGEVLFEPVE QSWLIDFRRYFEAELQQLEEMAEQGLVKVGAEGIEVTTMGWFFVRGVAMVFDKYLQAD RNRARFSRII" misc_feature 1176813..1178189 /locus_tag="Alide2_1127" /note="coproporphyrinogen III oxidase; Provisional; Region: PRK09249" /db_xref="CDD:181727" misc_feature 1177011..1177646 /locus_tag="Alide2_1127" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(1177011..1177013,1177017..1177025,1177149..1177151, 1177155..1177160,1177251..1177259,1177326..1177328, 1177449..1177451,1177539..1177544) /locus_tag="Alide2_1127" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature 1177749..1178111 /locus_tag="Alide2_1127" /note="HemN C-terminal region; Region: HemN_C; pfam06969" /db_xref="CDD:191656" gene 1178196..1178918 /locus_tag="Alide2_1128" /db_xref="GeneID:10482154" CDS 1178196..1178918 /locus_tag="Alide2_1128" /inference="similar to AA sequence:KEGG:Ajs_1093" /note="KEGG: ajs:Ajs_1093 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387050.1" /db_xref="GI:330823747" /db_xref="GeneID:10482154" /translation="MLLALASTAFFMGLMGGTHCLVMCAAPCAALTGAGGAPGGSEQV VRWMPRGSVAQRTVGFHLGRLTGYGVAGALAAFAMERLAWLSQGSAALRPVWTMFHVL ILAWGLLMMLQVRQPVWLEGAGRAVWGRVRSLVSRPGGLFVTGCAWALLPCGLLYTAL LTAALSGSVQRGALCMVLFGVGSGVWLVVGPVAWGRFRARVNGVAGTWGPRIAGLVLF TLGAGALWMDVVHGQPAPWCLP" sig_peptide 1178196..1178288 /locus_tag="Alide2_1128" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.682) with cleavage site probability 0.384 at residue 31" misc_feature 1178217..1178876 /locus_tag="Alide2_1128" /note="Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl00515" /db_xref="CDD:153822" gene 1179079..1180326 /locus_tag="Alide2_1129" /db_xref="GeneID:10482155" CDS 1179079..1180326 /locus_tag="Alide2_1129" /inference="protein motif:TFAM:TIGR00277" /note="TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: aav:Aave_1533 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain" /codon_start=1 /transl_table=11 /product="metal dependent phosphohydrolase" /protein_id="YP_004387051.1" /db_xref="GI:330823748" /db_xref="InterPro:IPR003607" /db_xref="InterPro:IPR006674" /db_xref="InterPro:IPR006675" /db_xref="GeneID:10482155" /translation="MFIQLEVGWMNHPFPMNSFRISSHEQIRVLRDLGLKSVRHIPAK STALAQTPSEALERMADVQPEQDDVGEPAVERLGRSTTAQAGVRALYNATQQRCRQRY QEAATVYESVCAGVQAAPQKVREQAESLVRACVAQLLEQGPYAVHLLADSLGQRSAGH AVNVLVLALLLGRALRMEARELCLLGTAALLHDLGKVGLPIHIAEPGAALNLSDMQRY QEHVGLSVDLGQRMGLSSDVLIAIAQHHEMADGSGFPLRLVGEDLSRCGQILALVNRY DRLCNPLHGEQALTPHEALARIFALRRECFDATVLGAFIRMMGVYPPGSLVQLVDGRF GLVVVVDALHSLRPCVVLYEPAVPRDEAPLLDLAQNDEVGILRSLKPAQLPRDALDYL LPRPRISYFFERALSPRDCGGSA" misc_feature 1179079..1179465 /locus_tag="Alide2_1129" /note="Domain of unknown function (DUF3391); Region: DUF3391; pfam11871" /db_xref="CDD:152307" misc_feature 1179628..1179975 /locus_tag="Alide2_1129" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature order(1179652..1179657,1179898..1179900) /locus_tag="Alide2_1129" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature 1179655..1179657 /locus_tag="Alide2_1129" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene 1180323..1182773 /locus_tag="Alide2_1130" /db_xref="GeneID:10482156" CDS 1180323..1182773 /locus_tag="Alide2_1130" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; KEGG: dac:Daci_2786 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS" /codon_start=1 /transl_table=11 /product="PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase" /protein_id="YP_004387052.1" /db_xref="GI:330823749" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR013767" /db_xref="GeneID:10482156" /translation="MIISGHSFAAIWNGIDLAAWLVDGHALQIRHANEAAARLVGRSV ADMEGMPVHGLVVTPEDLIFWGQSHAGIAAGIHSHTWVRNMHSGNLVPVDRRVLAIQA SEGDPADRYLLLTMQDRSEHEASQRELESLLSELRATLDSAADGVLTCNLHGEIRAFN QRLAQIWQLPRELLLRRDDAAIRVHMESQVLDAEAYRLRLAAIAHEPMLETTDILHLR NGMTVEQRSVPQLIQGRPAGRVYSFRDISRQAEVQAGLRLAARVFESSLDAIFIADER HAVARINPGCEQLLGAAAQGVVGRRVTALFAMAQDDAEFMAEVRQGWEQAGFWEGELR LRQEEDAHCCVQLSWVALRDDAGAVAQSIGFMRDLSVQHAAQKRIEELAYSDALTGLP NRLPLNKRVAAAIEASRGHGGGFAILFLDLDRFKNVNDSLGHPFGDRVLKLVAERLQG CLRQSDMLCRLGGDEFVIYLHDADAAIAESVARRVQEEMLRPFMLDEMGFSIQCSIGM SLYPQDGDALDDLIKHADTAMYRVKERGRGSYGFYQPQMNAHLLSRMKMEHAMRQALN HGHMAVHYQPQVDMATGCIVGAEALVRWTDPEFGVVSPGTFVPLAEESGYIVTLGAWV MEQAVKEAAHWMGCGTPLVVSVNVSALEFRQAGFVERISALLAQYGLPARWLELELTE TVLLQDAQEMQQVLDALARLGVGLSIDDFGTGYSSLAYLKKLTIHRLKIDKSFVGGLP GDGGDCAIVQAIVSMGRALRIGVVAEGVETQAQRQALQGMGCDCYQGFLCAPAMPAAD FRVRMAEPATGAKRIAKR" misc_feature 1180950..>1181255 /locus_tag="Alide2_1130" /note="Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]; Region: RocR; COG3829" /db_xref="CDD:33622" misc_feature 1181103..1181429 /locus_tag="Alide2_1130" /note="PAS fold; Region: PAS; pfam00989" /db_xref="CDD:144544" misc_feature 1181124..1181429 /locus_tag="Alide2_1130" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(1181166..1181168,1181178..1181180,1181196..1181198, 1181235..1181246,1181325..1181327,1181340..1181342) /locus_tag="Alide2_1130" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(1181226..1181228,1181238..1181240,1181265..1181267, 1181274..1181279,1181361..1181363,1181367..1181369) /locus_tag="Alide2_1130" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 1181472..1181942 /locus_tag="Alide2_1130" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1181583..1181585,1181712..1181714) /locus_tag="Alide2_1130" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1181598..1181600,1181607..1181612,1181622..1181624, 1181634..1181636,1181700..1181702,1181706..1181717) /locus_tag="Alide2_1130" /note="active site" /db_xref="CDD:143635" misc_feature order(1181688..1181690,1181772..1181774) /locus_tag="Alide2_1130" /note="I-site; other site" /db_xref="CDD:143635" misc_feature 1181997..1182716 /locus_tag="Alide2_1130" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(1182800..1182979) /locus_tag="Alide2_R0013" /db_xref="GeneID:10482157" misc_RNA complement(1182800..1182979) /locus_tag="Alide2_R0013" /product="6s_RNA" /note="6S / SsrS RNA as predicted by Rfam (RF00013), score 44.37" /db_xref="GeneID:10482157" gene complement(1183028..1183384) /locus_tag="Alide2_1131" /db_xref="GeneID:10482158" CDS complement(1183028..1183384) /locus_tag="Alide2_1131" /inference="protein motif:PFAM:PF05164" /note="PFAM: Cell division protein ZapA-like; KEGG: dia:Dtpsy_1010 protein of unknown function DUF710" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387053.1" /db_xref="GI:330823750" /db_xref="InterPro:IPR007838" /db_xref="GeneID:10482158" /translation="MKQIEVQILQQSYLLACPDGHESRLLEAVERVDTAMTRIRDAGK VRARERIAVLAALNLAFEIADREASELAAATAQRSAPPAAADAGNPSPSPAQEQRMQQ LLLRLDQALGDDGRLL" misc_feature complement(<1183184..1183378) /locus_tag="Alide2_1131" /note="Cell division protein ZapA; Region: ZapA; cl01146" /db_xref="CDD:194051" gene complement(1183381..1183620) /locus_tag="Alide2_1132" /db_xref="GeneID:10482159" CDS complement(1183381..1183620) /locus_tag="Alide2_1132" /inference="similar to AA sequence:KEGG:Ajs_1095" /note="KEGG: ajs:Ajs_1095 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387054.1" /db_xref="GI:330823751" /db_xref="GeneID:10482159" /translation="MDHPSSLDQIAERVERLLLRHAELQRTNALLAQQVSALTQERDS LKSRLQAARARVDALLDRLPATSAPAAPTETKDAP" misc_binding 1183655..1183899 /note="Cobalamin riboswitch as predicted by Rfam (RF00174), score 58.15" /bound_moiety="adenosylcobalamin" gene 1184048..1185841 /locus_tag="Alide2_1133" /db_xref="GeneID:10482160" CDS 1184048..1185841 /locus_tag="Alide2_1133" /inference="protein motif:PFAM:PF07715" /note="PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: aav:Aave_1537 TonB-dependent receptor" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor plug" /protein_id="YP_004387055.1" /db_xref="GI:330823752" /db_xref="GO:0004872" /db_xref="GO:0005215" /db_xref="InterPro:IPR000531" /db_xref="InterPro:IPR012910" /db_xref="GeneID:10482160" /translation="MAACAVQAQQGAAHVLDDVVVTATRTAQPLTDVLADVSIVDRET IEQSGATGLGDVLARLPGIEMARSGGPGGTTSMFVRGAETRFTAVYVDGVRVDSQAGS GGTTWEAIPLAQIERIEVLRGPAAAVYGSDAVAGVIQIFTKKGEAGVAPYVGVGAGSH GTYRAEAGVSGASGAVDYALGITRETSKGFNAKKDGNPDRDDYRGTSASGRLGWQLNT AHRLEGNFLYNDTDSGYDVSKTADDRSLHRLQALGLGWQAQWSDSYKTRLSVTDSRDR YETRPSVYFTDTRLRGYLFFNELRVGAHQFTAALERREDELTNESVSSGMRSRAQNAL ALGYGLRMGAHTVQLNARHDEDSEFGGKTTGSAAYGYAFAPGWRATASAGTAFKAPTL YQRFSMYGDDTLRPETSRNVELGLKWAERANSFSATVYRNNVSNLIDWQGNTGTCAGN SGPYPGCYANVGRARYEGLTLAGAYGLGGVQLRGSLDLQNPKNLDTGRQLGRRAKQHA VLGADTRLAGWTLGAEAQVSGKRYDNNNANAPQLGGYTLFNLYASTRVARDYLIYARL DNLADKNYELARNYATAGRTFFVGVKWAPAR" misc_feature 1184093..1185826 /locus_tag="Alide2_1133" /note="Outer membrane cobalamin receptor protein [Coenzyme metabolism]; Region: BtuB; COG4206" /db_xref="CDD:33936" misc_feature 1184156..1185826 /locus_tag="Alide2_1133" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(1184156..1184182,1184210..1184239,1184276..1184293, 1184312..1184335,1184381..1184413,1184447..1184473) /locus_tag="Alide2_1133" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature 1184909..1184911 /locus_tag="Alide2_1133" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 1186013..1187365 /locus_tag="Alide2_1134" /db_xref="GeneID:10482161" CDS 1186013..1187365 /locus_tag="Alide2_1134" /inference="protein motif:PFAM:PF07685" /note="PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_1013 CobB/CobQ domain protein glutamine amidotransferase" /codon_start=1 /transl_table=11 /product="CobB/CobQ domain-containing protein glutamine amidotransferase" /protein_id="YP_004387056.1" /db_xref="GI:330823753" /db_xref="GO:0003824" /db_xref="InterPro:IPR002586" /db_xref="InterPro:IPR011698" /db_xref="GeneID:10482161" /translation="MDITARCPALVVSAAASGQGKTTVTAALARLHERQGRRVRVFKC GPDYLDPYWHQLASGAPVEQLDLWMTGPADCAARLHAAACEADLILIEGVMGLFDGED CVADLAQRFGIPVLAVVDAGAMGGTLGAIVHGLRHYREGLPWAGVLANRVAGERHAGM LRAGLRDGADWLGALPRLSLDEDARAPLLPERHLGLVAANELPDALQRLDAAADALAA TPLGRMDAQALQRFATDFPAPPPRESVAPLLAGRTVAVARDAAFCFIYPGNVQTLQQL GARVVFFSPLHDAALPACDAVWLPGGYPELHAAALAANTAFQASLRAHVQAGRPLWAE CGGMMALCDAITLHDGRTVRLWGLLPGRVAMQRRLAALGPQQLALAQGCLRGHTFHYS TCDSTAPVDARTARPGQDAAPDAGEAVYRVGGLRASYFHAWFASSPCATAALFGAEGT " misc_feature 1186025..1187353 /locus_tag="Alide2_1134" /note="cobyrinic acid a,c-diamide synthase; Validated; Region: PRK01077" /db_xref="CDD:179218" misc_feature 1186037..1186570 /locus_tag="Alide2_1134" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature 1186772..1187347 /locus_tag="Alide2_1134" /note="Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase; Region: GATase1_CobB; cd03130" /db_xref="CDD:153224" misc_feature order(1187015..1187017,1187309..1187311,1187315..1187317) /locus_tag="Alide2_1134" /note="catalytic triad [active]" /db_xref="CDD:153224" gene 1187362..1187946 /locus_tag="Alide2_1135" /db_xref="GeneID:10482162" CDS 1187362..1187946 /locus_tag="Alide2_1135" /EC_number="2.7.7.62" /inference="protein motif:PRIAM:2.7.7.62" /note="KEGG: dia:Dtpsy_1014 cobalbumin biosynthesis protein; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase" /codon_start=1 /transl_table=11 /product="adenosylcobinamide-phosphate guanylyltransferase" /protein_id="YP_004387057.1" /db_xref="GI:330823754" /db_xref="InterPro:IPR003203" /db_xref="GeneID:10482162" /translation="MNAIARSELILGGQKSGKSRRAEMLAREWLAQSPAYRALLIATG QPWDDEMRARIARHRRERAERVPGLATVEEPRDLAAALARHGAPDTLIVVDCLTLWLT NWLMPASAPEYEPNWPPGQDWKAQAALFLEAVRQAPGPVVLVGNEIGLGVIPLGREVR AFVDALGALNQQAAQACARVTLMAAGLPLFLKNP" misc_feature 1187386..1187934 /locus_tag="Alide2_1135" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature order(1187395..1187400,1187410..1187418) /locus_tag="Alide2_1135" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature order(1187398..1187400,1187410..1187418,1187479..1187481, 1187485..1187490,1187644..1187649) /locus_tag="Alide2_1135" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature 1187632..1187646 /locus_tag="Alide2_1135" /note="Walker B motif; other site" /db_xref="CDD:29986" gene 1187943..1188842 /locus_tag="Alide2_1136" /db_xref="GeneID:10482163" CDS 1187943..1188842 /locus_tag="Alide2_1136" /inference="protein motif:PFAM:PF01497" /note="PFAM: Periplasmic binding protein; KEGG: dia:Dtpsy_1015 periplasmic binding protein" /codon_start=1 /transl_table=11 /product="ABC transporter periplasmic subunit" /protein_id="YP_004387058.1" /db_xref="GI:330823755" /db_xref="GO:0005381" /db_xref="InterPro:IPR002491" /db_xref="GeneID:10482163" /translation="MKPTPVRRILWVLAILVLLGLLMAGLAQAQPIQITDDRGKVLRF DAPPKRIVSLLPSLTESVCELQHCERLVGVDRYSNWPAFVRTLPQVGGGLDPNIESVV ALRPDMVLLSVSSRVSDRLEALGLKVAALEPKTHADVRRVLGVVGDLLGVPPQQGAQR VWREIDAAVSAAAQSLPPRARGVRVYFEVSRGPYAAGGSSFIGETLARMGARNVVPGT LGPFPRLSPEFVLRAQPDLVMISNRTGEPLTLYPGWQNMAAVKAGRLCEFGPAQSDVL IRPGPRMAEAARIMAGCLSGKFP" sig_peptide 1187943..1188032 /locus_tag="Alide2_1136" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 30" misc_feature 1188087..1188815 /locus_tag="Alide2_1136" /note="Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface...; Region: TroA-like; cl00262" /db_xref="CDD:193735" misc_feature 1188093..1188752 /locus_tag="Alide2_1136" /note="Periplasmic binding protein; Region: Peripla_BP_2; pfam01497" /db_xref="CDD:144914" misc_feature order(1188306..1188311,1188384..1188386) /locus_tag="Alide2_1136" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:29734" gene 1188839..1189882 /locus_tag="Alide2_1137" /db_xref="GeneID:10482164" CDS 1188839..1189882 /locus_tag="Alide2_1137" /inference="protein motif:PFAM:PF01032" /note="PFAM: ABC transporter permease protein; KEGG: dia:Dtpsy_1016 transport system permease protein" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387059.1" /db_xref="GI:330823756" /db_xref="GO:0005215" /db_xref="InterPro:IPR000522" /db_xref="GeneID:10482164" /translation="MSAVMPPAALDAAPSAGQRRALWLALWLLLASCALLVLGASVGS TGFDSVLHAGRDPLARQIVWDIRLPRTLGAWLAGALLGLAGAVAQGLFRNPLADPYLL GSASGAALGGAVAMAMLGVSPTTASWLAGLGVTGAAFIGAAGAVLLTLVLARGVQHTL RLLLAGVIVGVVLSAARDLIQVAKPQILESMQVFTMGSSAFVGWQACVLMAGSWALCA AAAWALSRLLDGLMLGEATAASLGLPLAPMRAGLVLAMALATGTAVAHTGLIAFVGLA APHLVRSIARVTHQWHVWLSSLMGAVLLLAADILARWLIAPQELPVGVLTAALGGSYL LWLMHRRTLAVVL" misc_feature <1189373..1189852 /locus_tag="Alide2_1137" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature order(1189373..1189375,1189379..1189381,1189412..1189417, 1189424..1189426,1189652..1189654,1189808..1189810, 1189817..1189822,1189829..1189831,1189838..1189843, 1189850..1189852) /locus_tag="Alide2_1137" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(1189379..1189381,1189454..1189456,1189628..1189630, 1189640..1189642,1189772..1189774,1189799..1189801) /locus_tag="Alide2_1137" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" misc_feature order(1189502..1189507,1189511..1189519,1189523..1189528, 1189532..1189549,1189553..1189561,1189682..1189684, 1189703..1189705) /locus_tag="Alide2_1137" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" gene 1189879..1190655 /locus_tag="Alide2_1138" /db_xref="GeneID:10482165" CDS 1189879..1190655 /locus_tag="Alide2_1138" /inference="protein motif:PFAM:PF00005" /note="manually curated; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1017 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="ABC transporter-like protein" /protein_id="YP_004387060.1" /db_xref="GI:330823757" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482165" /translation="MKEIAVSARQISASMQNNAILHGIDLDLPQGRWTSVVGPNGAGK STLLKALAGLLRHARVQGQVALLGRPLAEIPARERARQLAWMGQNESAAEDLPAYDIA MLGRLPHRPWMAPPSSADHAAVQAALRTTQAWDWRDRPLSQLSGGERQRVLLARALAV QASVTFMDEPLANLDPPHQTDWLHTVRSLVAAGGTVVSVLHEISIALQADDMLVMAAG RIAHHGPCQDGATHAALEQVFERRIQVRQIDGMWMALPRV" misc_feature 1189891..1190631 /locus_tag="Alide2_1138" /note="ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120" /db_xref="CDD:31317" misc_feature 1189906..1190550 /locus_tag="Alide2_1138" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1189990..1190013 /locus_tag="Alide2_1138" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(1189999..1190004,1190008..1190016,1190140..1190142, 1190380..1190385,1190479..1190481) /locus_tag="Alide2_1138" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 1190131..1190142 /locus_tag="Alide2_1138" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 1190308..1190337 /locus_tag="Alide2_1138" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 1190368..1190385 /locus_tag="Alide2_1138" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 1190392..1190403 /locus_tag="Alide2_1138" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 1190467..1190487 /locus_tag="Alide2_1138" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene 1190679..1191248 /locus_tag="Alide2_1139" /db_xref="GeneID:10482166" CDS 1190679..1191248 /locus_tag="Alide2_1139" /EC_number="2.5.1.17" /inference="protein motif:TFAM:TIGR00708" /note="TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: ctt:CtCNB1_1848 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR" /codon_start=1 /transl_table=11 /product="cob(I)alamin adenosyltransferase" /protein_id="YP_004387061.1" /db_xref="GI:330823758" /db_xref="GO:0005524" /db_xref="GO:0008817" /db_xref="InterPro:IPR003724" /db_xref="GeneID:10482166" /translation="MQTETPPSDKPYDKPEGERRGLVIVNTGDGKGKSTAAFGLAFRA TGRGKAVKVYQFMKVPSARFGEHRLAEQVGLPVEGLGDGFSWKSKDLEHSAQLARDGW AKARAAILSGEYFLVVLDEVTYPLIYGWLPLQEVLDTLAARPGDVHVCLTGRRCPQEI IDVADTVTEMRLVKHAFQAGVPAQRGIED" misc_feature 1190679..1191242 /locus_tag="Alide2_1139" /note="ATP:corrinoid adenosyltransferase [Coenzyme metabolism]; Region: BtuR; COG2109" /db_xref="CDD:32292" misc_feature 1190733..1191209 /locus_tag="Alide2_1139" /note="ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a...; Region: CobA_CobO_BtuR; cd00561" /db_xref="CDD:29983" misc_feature order(1190736..1190738,1190769..1190771,1190781..1190783, 1190793..1190798,1190802..1190819,1190865..1190867, 1190871..1190876,1190880..1190885,1191120..1191122, 1191159..1191164,1191168..1191191,1191195..1191200, 1191204..1191206) /locus_tag="Alide2_1139" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29983" misc_feature 1190760..1190780 /locus_tag="Alide2_1139" /note="Walker A motif; other site" /db_xref="CDD:29983" misc_feature order(1190769..1190771,1190775..1190783,1190805..1190807, 1191039..1191041) /locus_tag="Alide2_1139" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29983" misc_feature order(1190850..1190852,1190862..1190864,1190934..1190936, 1191048..1191050,1191060..1191062,1191138..1191140, 1191207..1191209) /locus_tag="Alide2_1139" /note="hydroxycobalamin binding site [chemical binding]; other site" /db_xref="CDD:29983" misc_feature 1191024..1191038 /locus_tag="Alide2_1139" /note="Walker B motif; other site" /db_xref="CDD:29983" gene 1191355..1191867 /locus_tag="Alide2_1140" /db_xref="GeneID:10482167" CDS 1191355..1191867 /locus_tag="Alide2_1140" /inference="protein motif:TFAM:TIGR00589" /note="KEGG: dia:Dtpsy_1019 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Methylguanine DNA methyltransferase, ribonuclease-like" /codon_start=1 /transl_table=11 /product="methylated-DNA/protein-cysteine methyltransferase" /protein_id="YP_004387062.1" /db_xref="GI:330823759" /db_xref="GO:0003824" /db_xref="InterPro:IPR008332" /db_xref="InterPro:IPR014048" /db_xref="GeneID:10482167" /translation="MPLLYCHLPTPLGEMLAIASSQGLCLLEFVGQKGVEREQAQVEA ARGGPAREGMNAILEQTRAELAEYFAGQRQAFGVPLDLVGTPFQNDAWQALRAIPYGQ TRSYASQARAIGRPTATRAVAAANGQNKVSIIVPCHRVIGSDGSLTGFGGGLPRKQAL LALEGGGMLF" misc_feature 1191358..1191852 /locus_tag="Alide2_1140" /note="Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]; Region: Ada; COG0350" /db_xref="CDD:30699" misc_feature 1191361..1191600 /locus_tag="Alide2_1140" /note="6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; Region: Methyltransf_1N; pfam02870" /db_xref="CDD:145821" misc_feature 1191613..1191849 /locus_tag="Alide2_1140" /note="The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445" /db_xref="CDD:119438" misc_feature order(1191613..1191618,1191670..1191675,1191697..1191699, 1191706..1191708,1191712..1191717,1191721..1191723, 1191730..1191735,1191739..1191741,1191763..1191765, 1191778..1191780,1191799..1191801) /locus_tag="Alide2_1140" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:119438" misc_feature order(1191670..1191672,1191763..1191768,1191772..1191774, 1191844..1191846) /locus_tag="Alide2_1140" /note="active site" /db_xref="CDD:119438" gene complement(1191864..1192559) /locus_tag="Alide2_1141" /db_xref="GeneID:10482168" CDS complement(1191864..1192559) /locus_tag="Alide2_1141" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2354 methyltransferase type 11" /codon_start=1 /transl_table=11 /product="type 11 methyltransferase" /protein_id="YP_004387063.1" /db_xref="GI:330823760" /db_xref="GO:0008168" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10482168" /translation="MTRLVNDEIDILAELVPAPGPQVIELGCGAARMARQMLQRWPGL RYVGLEVDTIQHARNLQDPPAGMRFVAAGAQDIPCEDGQFDLALMLKSLHHVPLDAMD QALAEVARVLRPGGYLYVSEPVFAGPLNEVTRLYNDEGAVRAAAQAAVDCALAAHASP WREMAQRRFDMPVEFSDFADFEQRMMRPSFADHHIDDALQARVAAAFAPHCTPQGARF VRPMHVRLLQRKS" misc_feature complement(1192197..1192493) /locus_tag="Alide2_1141" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1192290..1192292,1192338..1192346, 1192407..1192412,1192464..1192484)) /locus_tag="Alide2_1141" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1192620..1193690) /locus_tag="Alide2_1142" /db_xref="GeneID:10482169" CDS complement(1192620..1193690) /locus_tag="Alide2_1142" /EC_number="1.6.99.1" /inference="protein motif:PRIAM:1.6.99.1" /note="KEGG: gbm:Gbem_2134 NADPH-dependent enal/enone/nitroreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal" /codon_start=1 /transl_table=11 /product="NADPH dehydrogenase" /protein_id="YP_004387064.1" /db_xref="GI:330823761" /db_xref="InterPro:IPR001155" /db_xref="GeneID:10482169" /translation="MLFSPLQIRSITARNRIAVSPMCMYSSVEGMPNHWHLVHLGSRA VGGAGIVMTEACAVSREGRISPMDLGIWSDEHAQALQPVVEFIRQAGAVPAIQLAHAG RKAATAVPWLGHKPIYDQPHGWMPLGPSPIPYANGYPPPLEMGTADLKKVVDDFSAAA RRANTAGFEVIECHMGHGYLLHSFLSPIANQRRDDYGGSLENRARLPLQVAAAVRESL PQQLPLFVRISCTDWVAGGWDLAQSIQLAKWMKEVGVDLIDCSSGAVTADSPIAAAPG FHVPFATAIREQAGIATGAVGLITEPAQAEQIVGTGLADLVFVGRGFLDNPYWALHAA RKLRANADWPVQYARAVGVPRS" misc_feature complement(1192641..1193687) /locus_tag="Alide2_1142" /note="NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902" /db_xref="CDD:32086" misc_feature complement(1192683..1193687) /locus_tag="Alide2_1142" /note="Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing...; Region: OYE_YqiM_FMN; cd02932" /db_xref="CDD:73380" misc_feature complement(order(1192716..1192718,1192725..1192733, 1192737..1192739,1192797..1192802,1192857..1192859, 1192908..1192910,1193010..1193012,1193154..1193156, 1193160..1193162,1193169..1193171,1193400..1193402, 1193526..1193528,1193616..1193618,1193622..1193624, 1193628..1193633)) /locus_tag="Alide2_1142" /note="active site" /db_xref="CDD:73380" misc_feature complement(order(1192716..1192718,1192725..1192733, 1192737..1192739,1192797..1192802,1192857..1192859, 1192908..1192910,1193010..1193012,1193160..1193162, 1193169..1193171,1193400..1193402,1193526..1193528, 1193622..1193624,1193628..1193633)) /locus_tag="Alide2_1142" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73380" misc_feature complement(order(1193154..1193156,1193160..1193162, 1193169..1193171,1193616..1193618,1193622..1193624)) /locus_tag="Alide2_1142" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73380" misc_feature complement(order(1192707..1192712,1192779..1192781, 1192797..1192799,1192854..1192856,1192860..1192862, 1193556..1193558,1193568..1193570,1193577..1193582, 1193586..1193591,1193619..1193621)) /locus_tag="Alide2_1142" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:73380" misc_feature complement(1193154..1193156) /locus_tag="Alide2_1142" /note="catalytic residue [active]" /db_xref="CDD:73380" gene complement(1193763..1194728) /locus_tag="Alide2_1143" /db_xref="GeneID:10482170" CDS complement(1193763..1194728) /locus_tag="Alide2_1143" /inference="similar to AA sequence:KEGG:H16_B0202" /note="KEGG: reh:H16_B0202 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004387065.1" /db_xref="GI:330823762" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482170" /translation="MRTLIATTLTLAALLAPAAHAADPWPTKPIKLVVPYTPGGLTDV LARVVGQKAGATLGQPIIVENKPGASTLIGAEYVAKSAPDGYTLLMTGTTTLTTNPLL MKKLPYKVADFTPVALVGMVPFIAVAHPSVPANNLQELLAYAKANPDKLTYSTSGQGT SSHLVAAMFAAATGTKLRDVPYKGSGPALNAVLSGEVSMTFDGVTLYIPYVNTGKLKA IALTGDHRLPALDKLPTLAESGYKDAVATALFGIVAPAGTPRPVIHQVNAAVQRAMAD PEVVARLRDFNAYVEPRSAEAFGELLQREAELWGRIIAPLNIQLD" sig_peptide complement(1194663..1194728) /locus_tag="Alide2_1143" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" misc_feature complement(1193772..1194656) /locus_tag="Alide2_1143" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1193775..1194593) /locus_tag="Alide2_1143" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1194959..1196146 /locus_tag="Alide2_1144" /db_xref="GeneID:10482171" CDS 1194959..1196146 /locus_tag="Alide2_1144" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: pde:Pden_3227 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387066.1" /db_xref="GI:330823763" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482171" /translation="MSYPFAGVTVLDLTQIYNGPYATFLLAQAGADVIKIEPPGGEHL RKRSGASGAAMPFAMLNANKRTMTLNLKSPPGRELLLELVKQADVLVENFAPGVMDRL GLDEGVLRQANPKLIYAAGSGYGKTGPYRDYPAMDLTVQAMTGVIDTTGHTDAPPVKS GPAIADFMAGIHLYGAIATALYEREHTGNARTIEVSMMEAVYPTLASSLGLFYGSGEA PRTGNRHTGMSLCPYNVYPTSDGYIAIITNNEQHWRSLVDALQCQHLAQDPRFATVKE RCNHMDLVDGALGKITRGYTKADLFERLIRNRVPCAPVRTLEEVVNDPHLHARGSLQW IDHPEYGRIVVPSTPLRFGGEDAAVAYRPSARLGADTEAILRERLSLDDAQVEALRAQ QVV" misc_feature 1194959..1196143 /locus_tag="Alide2_1144" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1196158..1196910 /locus_tag="Alide2_1145" /db_xref="GeneID:10482172" CDS 1196158..1196910 /locus_tag="Alide2_1145" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="KEGG: ara:Arad_7507 3-oxoacyl-(acyl-carrier-protein) reductase protein; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004387067.1" /db_xref="GI:330823764" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10482172" /translation="MKNLQGRVALVTGAGSGIGRSDALVLAERGATVLVNDFDPRAAD ETAAQIGEAGGCAVPCVADVGDAAAIAAAIDAAQRQAGAIDILVNNAGISGRQQAFDA IADADLARMFQVHVMGAWYCTRAVLPGMKDRGRGKIINTSSILGMAGRRRSAHYAGAK AALIGLTKAWAKEFAEWNIQVNAVAPGRVRTPILGAFADSEEYQRDLLANVPLRRRAE PEEVAWLVAFLASDESDYITGQIISPNGGEVV" misc_feature 1196161..1196907 /locus_tag="Alide2_1145" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1196176..1196898 /locus_tag="Alide2_1145" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(1196194..1196196,1196200..1196205,1196209..1196211, 1196266..1196274,1196425..1196433,1196578..1196586, 1196623..1196625,1196635..1196637,1196713..1196724) /locus_tag="Alide2_1145" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1196500..1196502,1196584..1196586,1196623..1196625, 1196635..1196637) /locus_tag="Alide2_1145" /note="active site" /db_xref="CDD:187535" gene complement(1196941..1197702) /locus_tag="Alide2_1146" /db_xref="GeneID:10482173" CDS complement(1196941..1197702) /locus_tag="Alide2_1146" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="KEGG: axy:AXYL_06414 3-oxoacyl-[acyl-carrier-protein] reductase 10; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004387068.1" /db_xref="GI:330823765" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10482173" /translation="MKSILLLENKLALVTGAGRGIGRAIAVAYANAGARVIVTDLSEA ACADTRAEVGAAGAQAWTYALDVCDADACARLADTVARELGDLQVLVNNAGLMIREKV DSPRAAHAVRQLMEVNYFGTFNVLHAFLPALRRSHGCVINLASGAALTGLPGCVGYSP SKGAVKMLTQAMAADLGTDGIRVNAIAPGVIETAMTESTRQDPQRLGGFMGRIPAGRL GRAEEIAGPAVFLASDLASYVNGITLPVDGGKQAV" misc_feature complement(1196956..1197684) /locus_tag="Alide2_1146" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557" /db_xref="CDD:180126" misc_feature complement(1196956..1197675) /locus_tag="Alide2_1146" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(1197130..1197141,1197217..1197219, 1197229..1197231,1197268..1197276,1197418..1197426, 1197577..1197585,1197640..1197642,1197646..1197651, 1197655..1197657)) /locus_tag="Alide2_1146" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(1197217..1197219,1197229..1197231, 1197268..1197270,1197349..1197351)) /locus_tag="Alide2_1146" /note="active site" /db_xref="CDD:187535" gene complement(1197736..1198980) /locus_tag="Alide2_1147" /db_xref="GeneID:10482174" CDS complement(1197736..1198980) /locus_tag="Alide2_1147" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: pag:PLES_04421 putative acyl-CoA transferase; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387069.1" /db_xref="GI:330823766" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482174" /translation="MQTSPTHPGALSHLRVLDLSRVFAGPWAGQMLADLGAEVIKVER PGEGDDSRRLGPPFLRDDAGQPTRDSGFYLSANRNKKSVSVDISRPEGQAIVRALAQS CDVLIENYKVGDLARHGLDYASLRALNPRLVYCSITGFGQTGPYRKKPGYDSIFQGMG GLMAITGHADGEPGGGHQKVGLIVSDLMAGMYASVAILAALEHRDAVSGEGQYIDLAL LDSQVAALSHSAMGYLVSGDPVPRCGTKSPTAAPSQMYRCQDGAVMLVVGNKAQWEKF ASVMGQPQLPGDPRFATNQDRIRHRDELNAILEPIFFSRPKQYWIDALAEAGVPCGPV NEMHEVFADPQVREREMVVHMQHPRRGAMPMLANPIRLSGTPVQYRMPPPDLGQHTDE VLVQLPGYDAARLKQLRDDGVI" misc_feature complement(1197739..1198968) /locus_tag="Alide2_1147" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1199012..1199821) /locus_tag="Alide2_1148" /db_xref="GeneID:10482175" CDS complement(1199012..1199821) /locus_tag="Alide2_1148" /EC_number="1.1.1.30" /inference="protein motif:PRIAM:1.1.1.30" /note="KEGG: azl:AZL_d00150 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-hydroxybutyrate dehydrogenase" /protein_id="YP_004387070.1" /db_xref="GI:330823767" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10482175" /translation="MPPPTPVPGELAGRVALVTGSTDGIGLAVAHALAAQGCAVVLNG FGEPQAIASLCEELAGTHGVVVEHAGADLMLEEQASGLVPQVLARFGRLDILVNNAGT QHKGPIEEHPSQRWREVFALNLDAAFHTIRTALPSMRGAGWGRVVNIASVYGLAGGVD RSSYVASKHALVGLTKAVALETAATPITCNAVCPGDVSTRIFYRNAKLLAEREQITRA EAQRRIAATNMPSGRVVSPEQVAALVAFLCTEAAGEIRGAALPVDGAWLAR" misc_feature complement(1199015..1199785) /locus_tag="Alide2_1148" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1199018..1199785) /locus_tag="Alide2_1148" /note="3-hydroxybutyrate dehydrogenase; Region: PHB_DH; TIGR01963" /db_xref="CDD:162628" misc_feature complement(order(1199231..1199242,1199318..1199320, 1199330..1199332,1199369..1199377,1199519..1199527, 1199684..1199692,1199747..1199749,1199753..1199758, 1199762..1199764)) /locus_tag="Alide2_1148" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(1199318..1199320,1199330..1199332, 1199369..1199371,1199453..1199455)) /locus_tag="Alide2_1148" /note="active site" /db_xref="CDD:187535" gene complement(1199827..1200822) /locus_tag="Alide2_1149" /db_xref="GeneID:10482176" CDS complement(1199827..1200822) /locus_tag="Alide2_1149" /inference="similar to AA sequence:KEGG:Reut_B3884" /note="KEGG: reu:Reut_B3884 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387071.1" /db_xref="GI:330823768" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482176" /translation="MRDHLNNVTRRHTLMTLAAAAAPWAATTARADTYPSRPIRIVVP YAAGGFTDIVSRLVAQKMSVKLGQPVVVDNKAGGSTIIGAEAVARSAPDGYTLLMAVT TTISTNPFLFKKLPYKPSDFVPVALTGLTPFVLSAHPSVPANTLRELIAMEKAKPGTL NLATLGTGSSTHLVGEMFNSLAGVKLNMIPYKGAGPALNDLMAGHVQLYFDGIATSAP LFRAGKLKGIAITGDSRSQAAPQVPTFAESGLPEMQAASWYGLLAPAHTPQAIIELLN QATNEALQSPDVRARVAQDGASAPALSPQQFGELIDKHSRTWERIIKPLNISLDV" sig_peptide complement(1200727..1200822) /locus_tag="Alide2_1149" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.991 at residue 32" misc_feature complement(1199842..1200723) /locus_tag="Alide2_1149" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1199842..1200663) /locus_tag="Alide2_1149" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1200924..1201493) /locus_tag="Alide2_1150" /db_xref="GeneID:10482177" CDS complement(1200924..1201493) /locus_tag="Alide2_1150" /inference="similar to AA sequence:KEGG:Vapar_5494" /note="KEGG: vap:Vapar_5494 gamma-BHC dehydrochlorinase" /codon_start=1 /transl_table=11 /product="gamma-BHC dehydrochlorinase" /protein_id="YP_004387072.1" /db_xref="GI:330823769" /db_xref="GeneID:10482177" /translation="MERNCQAMLQDLMDKEAIRDCLYRYCRGIDRADEAVLRSAYWPD AHDRHGAYAGDAEGFFAQALPRLRSGGRGVHQISNILIELHGDVAAVESSFLALQASA AMPTRETFLCGRYLDRFEKRQGQWRVANRLVVYDWIEERIRPELAREDADLFGKRRPN GGRLPKDPLYAFLDAVRATPTLLGREDAI" misc_feature complement(1201098..1201454) /locus_tag="Alide2_1150" /note="Putative lumazine-binding; Region: Lumazine_bd_2; pfam12893" /db_xref="CDD:193366" gene 1201566..1202375 /locus_tag="Alide2_1151" /db_xref="GeneID:10482178" CDS 1201566..1202375 /locus_tag="Alide2_1151" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: swi:Swit_0321 1,4-dihydroxy-2-naphthoate synthase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387073.1" /db_xref="GI:330823770" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482178" /translation="MILDYSRYQYLSIQCDNGIATLMLNQPDNRNAIHAEMHAELEHV WLDLQADPQVNVIVLTGAGKIFSAGGDIKRMINRFGTDEGWQTSLAIPASTKRLFQGI LEVEKPIVAAINGDAVGLGATLALFCDATVIAEGAKFGDSHVKVGLVAGDGGAVIWPI LVGPNRAKEFLMRGKLMSGKDAHAMGLVNHVAPAEQVLESAMQIARELNALPPLAVRW TKLSVNKWIKQQLNLILDASIAYEMLSINSQDHHEAAKAFLEKRAPVFKGN" misc_feature 1201566..1202372 /locus_tag="Alide2_1151" /note="enoyl-CoA hydratase; Provisional; Region: PRK07327" /db_xref="CDD:180931" misc_feature 1201596..1202189 /locus_tag="Alide2_1151" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1201653..1201655,1201659..1201661,1201755..1201757, 1201767..1201781,1201911..1201913,1201917..1201925, 1201989..1201994,1202001..1202003) /locus_tag="Alide2_1151" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1201773..1201775,1201923..1201925) /locus_tag="Alide2_1151" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1201863..1201865,1201887..1201889,1201950..1201961, 1201995..1202006,1202022..1202024,1202028..1202036, 1202040..1202045,1202058..1202063,1202067..1202072, 1202076..1202081,1202088..1202090,1202121..1202123, 1202130..1202132,1202175..1202177,1202184..1202189) /locus_tag="Alide2_1151" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1202384..1203550 /locus_tag="Alide2_1152" /db_xref="GeneID:10482179" CDS 1202384..1203550 /locus_tag="Alide2_1152" /inference="protein motif:PFAM:PF02771" /note="PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004387074.1" /db_xref="GI:330823771" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482179" /translation="MADQAPQTDWNHLDDEEFRRVAAEFFATHVPRHLRFLSRRPRWS EVKEWYLTLSARGWLMPNWPKEWGGMGLTQSKILVYLEELERSGAPRVMDQGQMNIGP LLIARGTDEQRARFLPKILSGEHTWCQGYSEPNAGSDLASLRTEARIEGDEFVINGQK IWTSVAFDATHMFALVRTDKTVKKQAGISFVMIDMRQPGVTVRPIRNIAGHEELCEVF LDNVRTPKANMVGKLNDGWNVAKALLGFERIWSGSPRQSMLALLRLQKLAKASGKMAD PAFVDKFTQVTMDVLDSAAAYERFAQIMRTGGSFGFEVSMLKIWATETCQRVTELMVD AAGDLGALGGDVDVDGQEMDILYPFLECRAFTIYGGSSQVQRNILAKNVLDLPS" misc_feature 1202423..1203541 /locus_tag="Alide2_1152" /note="pimeloyl-CoA dehydrogenase, large subunit; Region: pimC_large; TIGR03204" /db_xref="CDD:132248" misc_feature 1202423..1203538 /locus_tag="Alide2_1152" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1202678..1202680,1202768..1202770,1202774..1202776, 1202867..1202869,1202873..1202875,1203482..1203490, 1203494..1203496,1203500..1203502) /locus_tag="Alide2_1152" /note="active site" /db_xref="CDD:173838" gene 1203559..1204704 /locus_tag="Alide2_1153" /db_xref="GeneID:10482180" CDS 1203559..1204704 /locus_tag="Alide2_1153" /inference="protein motif:PFAM:PF00441" /note="PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004387075.1" /db_xref="GI:330823772" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482180" /translation="MQENNLSEAQQQIEMLRESAADFVGRNTDMKRLRERRGILPGYE PEHLRHMAELGWLGIVVPEAHGGLGLGFCELAVVLQELGKGLMADPLVPVAFAARVLQ HGDNEGLKQSLLPQVVDASLLPCVAWQEGLGGIETAAIETRVEADGADLLLSGRKRFV AGAAGAGGFVVSARGAAGCGLYWVDAQAAGLTVGHEQRADETPSGVLEFDRVRITPAN VVSAAGPQGLAALDRALDEAAVLAGAEMLGVVEAALYMALGYMRTRVQFGKPIGSFQA LQHKAADLYVQQELVRAVLAEAVRVLDADTPAQERASMASRFKARASDGGLRVTREVI QLHGAIGFTDEYDAGLYLKRALVLSAWLGNASAHRRRFAALQQEVTV" misc_feature 1203580..1204680 /locus_tag="Alide2_1153" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1203598..1204623 /locus_tag="Alide2_1153" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" gene 1204742..1205599 /locus_tag="Alide2_1154" /db_xref="GeneID:10482181" CDS 1204742..1205599 /locus_tag="Alide2_1154" /inference="protein motif:PFAM:PF01614" /note="KEGG: gct:GC56T3_1469 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004387076.1" /db_xref="GI:330823773" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10482181" /translation="MIRAVGRALAIFDAYDNEHLSLSLQEIAERIRMPKTTAFRLVNT LERAGFLIRMDNQQYCLSLKMARLGGLVRSTLSIREIARPVMLQVNAQTSETITLNTI VGNDRMVLEVVDTPAPLMSMARQGQHMPLYLGASSRILLAYMEPQDLERLVKVNMNVP DFDRAAFDRELARFRRQGYAISRGQRVPGLTAIAVPIFDINGEVRHCLALTGPSVRVD SRDQELADILLVAGRDISTRLGASPEHSADLKLLMADTTADVPGRGREKPAAKKAPAR KKVVASAAQ" misc_feature 1204745..1205011 /locus_tag="Alide2_1154" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1204748..1205464 /locus_tag="Alide2_1154" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 1205117..1205455 /locus_tag="Alide2_1154" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene complement(1205694..1206005) /locus_tag="Alide2_1155" /pseudo /db_xref="GeneID:10482182" gene complement(1206017..1206412) /locus_tag="Alide2_1156" /pseudo /db_xref="GeneID:10482183" gene complement(1206671..1208779) /locus_tag="Alide2_1157" /db_xref="GeneID:10482184" CDS complement(1206671..1208779) /locus_tag="Alide2_1157" /EC_number="5.1.2.3" /inference="protein motif:PRIAM:5.1.2.3" /note="KEGG: rme:Rmet_5110 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core" /codon_start=1 /transl_table=11 /product="3-hydroxybutyryl-CoA epimerase" /protein_id="YP_004387077.1" /db_xref="GI:330823774" /db_xref="InterPro:IPR001753" /db_xref="InterPro:IPR006108" /db_xref="InterPro:IPR006176" /db_xref="GeneID:10482184" /translation="MPSNHYSVHGGSAVITLSNPPVNAMGHAMRQELAAHLEAAWADP QVHSIVIIGAGKLFCGGADVKAFNTPASRAEPSSRTIVKQIEASAKPVIAAIHGSALG LGLEFAMGCHYRVAQRGAKLGLPEVKLGLLPGGGGTQRLPRLAGVEAALRMIVEGNSV TADEALKLGLVDEVAAQELLPAALAFAARMSARSEHPVASRRQAQAPAEAGWFDAQRD KLHKSKRGLPAPLECLACVEAAVNLPFDEGMKFERERFDVLVNGTESKALRHLFLAER AAAKIAGLAADTPVIPVRSVAVIGAGTMGGGIAMSFANAGIPVMLIEAAQEALDRGMA TIAKNYDGTVAKGKLAREEADARLARITPTLEFERVADADLVIEAVFESMEVKKELFR KLDALCKADAILATNTSRLDVNEIAATTARPASVIGLHFFSPANVMRLVEVVRGQATA PSVIASSMAVSRQIGKLPVLVGVCDGFVGNRMVGQYAREAEFLLEEGASPQQVDAALQ KFGLAMGRFAMSDLAGLDISWASRKRAAPTRPAHLRYSKVADRLCEMGRFGQKTGAGF YRYEAGSRTPIPDPIVQQVIEDCAREAGIERRVIDDAQIVERCIYALVNEGAKVLQEG IAQRSSDIDLIYVNGYGFPAWRGGPMFYADTVGVDKVYQRICDFHEKHGAFWTPAPLL KKLANEGRSFKELGDGARSA" misc_feature complement(1208258..1208767) /locus_tag="Alide2_1157" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(1206704..1208752) /locus_tag="Alide2_1157" /note="multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154" /db_xref="CDD:183002" misc_feature complement(order(1208393..1208395,1208402..1208407, 1208471..1208479,1208483..1208485,1208588..1208602, 1208612..1208614,1208708..1208710,1208714..1208716)) /locus_tag="Alide2_1157" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(1208471..1208473,1208594..1208596)) /locus_tag="Alide2_1157" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(1208264..1208266,1208273..1208275, 1208306..1208308,1208315..1208320,1208324..1208329, 1208333..1208338,1208351..1208356,1208360..1208368, 1208372..1208374,1208390..1208401,1208435..1208446, 1208507..1208509,1208531..1208533)) /locus_tag="Alide2_1157" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" misc_feature complement(1207364..1207846) /locus_tag="Alide2_1157" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1207073..1207354) /locus_tag="Alide2_1157" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" misc_feature complement(1206686..1206967) /locus_tag="Alide2_1157" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" gene 1208869..1209642 /locus_tag="Alide2_1158" /db_xref="GeneID:10482185" CDS 1208869..1209642 /locus_tag="Alide2_1158" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: swi:Swit_0344 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387078.1" /db_xref="GI:330823775" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482185" /translation="MSSIDIERRGAIAVITINNQAGRNALDMRMRQDLLALVREVSED EAVRAVVLTGAGNAFCSGADVGKMGGRDLAGSRQRMKTMHAMVRAVHGMDKPVVAAVC GPAVGIGFSLAMACDVVVASPGANFSQVFTQVGLAPDGGAIWFLARQMGFSRAKELVF SARKFTGEEAAALGLVQRLVPQESVLDEALALASQYAQGPGLALTMAKQLFAHSIAPT LEQFLEMELLVGPQLSQTRDHAEGRTAFKEKRKPQFTGQ" misc_feature 1208869..1209636 /locus_tag="Alide2_1158" /note="enoyl-CoA hydratase; Provisional; Region: PRK06688" /db_xref="CDD:180658" misc_feature 1208878..1209453 /locus_tag="Alide2_1158" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1208935..1208937,1208941..1208943,1209037..1209039, 1209049..1209063,1209178..1209180,1209184..1209192, 1209256..1209261,1209268..1209270) /locus_tag="Alide2_1158" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1209055..1209057,1209190..1209192) /locus_tag="Alide2_1158" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1209130..1209132,1209154..1209156,1209217..1209228, 1209262..1209273,1209289..1209291,1209295..1209303, 1209307..1209312,1209325..1209330,1209334..1209339, 1209343..1209348,1209355..1209357,1209388..1209390, 1209397..1209399,1209442..1209444,1209451..1209453) /locus_tag="Alide2_1158" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(1209695..1210852) /locus_tag="Alide2_1159" /db_xref="GeneID:10482186" CDS complement(1209695..1210852) /locus_tag="Alide2_1159" /inference="similar to AA sequence:KEGG:AXYL_06648" /note="KEGG: axy:AXYL_06648 thiolase, C-terminal domain-containing protein 10" /codon_start=1 /transl_table=11 /product="thiolase, C-terminal domain-containing protein 10" /protein_id="YP_004387079.1" /db_xref="GI:330823776" /db_xref="GeneID:10482186" /translation="MSATLKRGSAAIVGVAESDLGEVAAGMSVIDLMAQGVHRALADC GLTPADVDGVFAAAGQVRMPSTALCEYLGLKPRYQDCTMMGGSSFMTHVAHAQAAIEL GLCEVAVIAYGSTQRSAGRKNVAPREYNPYETPFRPVLPASAYALAASRHMHQYGTTR EQLAQIAVAARQWALLNPAAWEKEPLTVEQVLAARMVSHPLTVRDCCLVTDGGGALIM TSAARARTLRKPAAYVLGVGENISHQHISNMADLTVTGAARSGAQAYAMAGLGAPDID VVQVYDAFTITTLLFLEDLGFCPKGEGGRFVSDGAIAPGGRLAVNTNGGGLSYCHPGM YGLFVLIEAVRQLRGECGARQVVGCETAIAHGNGGVLSSQSTVVLGTAATL" misc_feature complement(1209698..1210852) /locus_tag="Alide2_1159" /note="thiolase; Provisional; Region: PRK06158" /db_xref="CDD:180434" misc_feature complement(1209719..1210816) /locus_tag="Alide2_1159" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature complement(order(1209860..1209862,1210010..1210012, 1210595..1210597)) /locus_tag="Alide2_1159" /note="active site" /db_xref="CDD:29416" gene complement(1210849..1211253) /locus_tag="Alide2_1160" /db_xref="GeneID:10482187" CDS complement(1210849..1211253) /locus_tag="Alide2_1160" /inference="protein motif:PFAM:PF01796" /note="PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rpc:RPC_1073 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387080.1" /db_xref="GI:330823777" /db_xref="InterPro:IPR002878" /db_xref="GeneID:10482187" /translation="MTETSPNVAERLPTSPLEQYRAHLTQGHLAFQVDEDGRALFYPR VAAPVDYRGELRWATSAGLGTVYATTFISPKGEPCYNVALIDMDEGFRLMSRVESIPA DQVRIGMRVKVRIHPAEGDEGPYPVFDPLEAA" misc_feature complement(1210909..1211085) /locus_tag="Alide2_1160" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene complement(1211250..1213403) /locus_tag="Alide2_1161" /db_xref="GeneID:10482188" CDS complement(1211250..1213403) /locus_tag="Alide2_1161" /inference="protein motif:PFAM:PF02629" /note="KEGG: reu:Reut_B4556 CoA-binding; PFAM: CoA-binding; SMART: CoA-binding" /codon_start=1 /transl_table=11 /product="CoA-binding domain-containing protein" /protein_id="YP_004387081.1" /db_xref="GI:330823778" /db_xref="InterPro:IPR003781" /db_xref="GeneID:10482188" /translation="MTATASRPLYRPDQLARTFAPRSIAVVGVSTNPGAFGSITYANI AGPGRFTGPVYMVNAKYKHIGDQPCYPSIAALPETPDCVFIAVPRDAVEAVVAECAQR GVGGVVLFSSGFAETGLPERVAQQQRLLEIARAADMRLLGPNCVGFMNYGLGLVGTFG TASYKGAPGPRATALVSQSGAVGAALAQAQEHGLALSHMLTCGNASDIDVADQVAYLA NDPACQAIACVFEGMSEPSRFLAAAALCREAGKPLVVHKLGTSARGAQAAVSHTGSVA GSQAAYRAAFEQAGVIMVDELEALLDTTSFFGKAPAPQARGVAVAAVSGGACILLADK AELHGVDLPHPAPATMAVLEHLIPEYGAPGNPCDMTAQVLSAPQQLHDCFEALMADPQ YGALVVPHTFAYAPATARIETLGKAAAEHGKIACNVWMTQHLEGPGAIESEQNPHVAT FRSMNHCMAALAAWHKRDDWLRAQGPAPARLSPAQAHERAAALIDASPNATLTEREGK EALAAYGVPVVRDRLTHSAEEAVAAAREVGLPVVMKVESPDIPHKTEAGVIRLGLKTE DEVRAAFAQVMRNAQTVMPPARIAGVLVQPMVPQGTEIMVGARIDPQFGPMVVVGLGG IFVELLKDTAVRPAPVGRQEALKMLGELKAQGALNGFRGAQPVDRKRLAEVIARISEF AADQRDRIAELDVNPLICAGGRIIAVDALIAKQTP" misc_feature complement(1211472..1213370) /locus_tag="Alide2_1161" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042" /db_xref="CDD:31244" misc_feature complement(1213065..1213349) /locus_tag="Alide2_1161" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(<1212639..1212935) /locus_tag="Alide2_1161" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" gene 1213574..1214740 /locus_tag="Alide2_1162" /db_xref="GeneID:10482189" CDS 1213574..1214740 /locus_tag="Alide2_1162" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: fal:FRAAL3384 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387082.1" /db_xref="GI:330823779" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482189" /translation="MSNDSWELSEELRQIQDTVSRFMAAEVKPAEDKLPHDAYELPPE VLLPLQKKARDIGLWCVRSPEEYGGAGLSLLGQAVVAEEAAKCRMGAYVPACGAFGAD PPNAIWLGTPDQIQRYGVPGIEGGKKIYFAISEASGGADPARSIRARAVRKGGKYILN GSKMWITGAKGADWGIVFARTGEQGDRGGITSFIVNGNPEGMSLKPIPVIRSYSPYEI TFKDVEVPVEDRLGEEGQGFAICEKWLIEGRIPYAAGTIGVAQAALQIAIDWAKERET FRTKLADKQAIQWMIADSEMELRAARLLTWQAAWIADLGRGDLKVASSIAKVTATETA NRVVDRAIQILGGLGVSQELPLERWFREMRIKRIGEGPSEVHRMVLARQLLGTR" misc_feature 1213592..1214731 /locus_tag="Alide2_1162" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1213601..1214731 /locus_tag="Alide2_1162" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1213877..1213879,1213964..1213966,1213970..1213972, 1214066..1214068,1214072..1214074,1214675..1214683, 1214687..1214689,1214693..1214695) /locus_tag="Alide2_1162" /note="active site" /db_xref="CDD:173838" gene 1214757..1215533 /locus_tag="Alide2_1163" /db_xref="GeneID:10482190" CDS 1214757..1215533 /locus_tag="Alide2_1163" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: bxe:Bxe_C0267 short chain enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387083.1" /db_xref="GI:330823780" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482190" /translation="MSIDLDLLDGGIAVITLNRPEKRNALDAEHYQALSQAWIRVRDD DAIRVAIVTGAGDKVFSAGADLKSWIGRKVPMSELWQTQKGMLLNRGLEVFKPVIAAV NGHCLAGGMTLMLATDLRVTADHATFALSEVKRGIIPANGGTQRLPAQLPHAIAMELL LIGDSIDAQTAARWGLVNRVVPADQVMATAIELARRVAANAPLAVQAIKELALRGQQA DLAAGLRFEQLVQNTLQRTEDAAEGRQAFAEKRSPRFTGS" misc_feature 1214781..1215527 /locus_tag="Alide2_1163" /note="carnitinyl-CoA dehydratase; Provisional; Region: PRK03580" /db_xref="CDD:179599" misc_feature 1214781..1215347 /locus_tag="Alide2_1163" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1214823..1214825,1214829..1214831,1214928..1214930, 1214940..1214954,1215069..1215071,1215075..1215083, 1215147..1215152,1215159..1215161) /locus_tag="Alide2_1163" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1214946..1214948,1215081..1215083) /locus_tag="Alide2_1163" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1215024..1215026,1215045..1215047,1215108..1215119, 1215153..1215164,1215180..1215182,1215186..1215194, 1215198..1215203,1215216..1215221,1215225..1215230, 1215234..1215239,1215246..1215248,1215279..1215281, 1215288..1215290,1215333..1215335,1215342..1215347) /locus_tag="Alide2_1163" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1215536..1216666 /locus_tag="Alide2_1164" /db_xref="GeneID:10482191" CDS 1215536..1216666 /locus_tag="Alide2_1164" /inference="similar to AA sequence:KEGG:Veis_4266" /note="KEGG: vei:Veis_4266 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387084.1" /db_xref="GI:330823781" /db_xref="GeneID:10482191" /translation="MSLSGRYVIAGIGHTAFGKLPGQDTVSMNVEACRHALADAGVEK SVVDAVFVKVPTSAHQFMYGQKVAEALGITPRMGGCWDQGGAANVTLLSFAIMAIEAG QCDVALVCYADNPRTGNRAVYGRPRGDDAAYGWFSTAAGYGMIHRRHMVEYGTRPEDF AAVAIASRKHGAGNPNAQLRKPLDLEQYMASPWVVDPLRKDDCALVSDGGAALVVMSA KRAKELGVAQPVPVLGFGHGQTSFELPQRATLTSTEAARAAHTAFQMAGAKPQDVDVA QLYDCFTVTVLMTLEDYGFCRKGEVGAFVRDGAIEHGGRLPVNTSGGLLSETGMPGLQ LIMEGVRQMRGTARLQVPGAKLCVVSNQGGTMHTHGTLLLGN" misc_feature 1215539..1216660 /locus_tag="Alide2_1164" /note="thiolase; Provisional; Region: PRK06158" /db_xref="CDD:180434" misc_feature 1215563..1216654 /locus_tag="Alide2_1164" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature order(1215788..1215790,1216370..1216372) /locus_tag="Alide2_1164" /note="active site" /db_xref="CDD:29416" gene 1216668..1217069 /locus_tag="Alide2_1165" /db_xref="GeneID:10482192" CDS 1216668..1217069 /locus_tag="Alide2_1165" /inference="protein motif:PFAM:PF01796" /note="PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: bbr:BB4332 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387085.1" /db_xref="GI:330823782" /db_xref="InterPro:IPR002878" /db_xref="InterPro:IPR022002" /db_xref="GeneID:10482192" /translation="MEMPKPEPTDLTRPYWDALHEGHLVFQRCSCGNAWLPARTHCPD CLKPEPRWERASGRGRIVSWVVYHTAYHPAFADKLPYNVTLVQLAEGPRLLTNIVDPN EALAADAPVVLKIEWEGDTALARFRLDHIPA" misc_feature 1216713..1216802 /locus_tag="Alide2_1165" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" misc_feature 1216821..1217015 /locus_tag="Alide2_1165" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene 1217084..1218268 /locus_tag="Alide2_1166" /db_xref="GeneID:10482193" CDS 1217084..1218268 /locus_tag="Alide2_1166" /EC_number="2.3.1.16" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: Thiolase; KEGG: vap:Vapar_0843 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004387086.1" /db_xref="GI:330823783" /db_xref="GO:0004871" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10482193" /translation="MREAVFVSTARTPLTKAHRGEFNITPGPTLAAFAVRAAVERAGI DPGLIEDVVMGCGNPEGRMARNIGRQAAIRAGLPLSVAGTTVSRFCASGLQAISEAAG RIVMDGEAALAAGGVESISGLKPPAPGAEGGSDPWIVEHKPDLYMAMIDTADVVAQRY GISREAQDRFSLQSQLRTEQAQAAGRYRDEIIPVTTQMAVIDKATGAVSQREVTVDRD TCNRAGTTYEALAALEPVKGPGKFITAGNASQLSDGAAACVMMEGKAAERANLQPLGA FRGFTVAGCEPDEMGIGPVFAVPKLLARHGLKVEDIGLWELNEAFASQVIYCRDRLGI PDELLNVNGGSIAIGHPFGMTGARLAGHVLLEGRRRRTKYAVVTMCIAGGMGAAGLFE IF" misc_feature 1217084..1218265 /locus_tag="Alide2_1166" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK07108" /db_xref="CDD:180843" misc_feature 1217096..1218259 /locus_tag="Alide2_1166" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(1217153..1217155,1217234..1217236,1217279..1217281, 1217288..1217290,1217300..1217302,1217333..1217344, 1217366..1217368,1217387..1217392,1217399..1217401, 1217444..1217446,1217921..1217923,1217927..1217929, 1217933..1217935,1217993..1217995,1218230..1218235) /locus_tag="Alide2_1166" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(1217351..1217353,1218131..1218133,1218221..1218223) /locus_tag="Alide2_1166" /note="active site" /db_xref="CDD:29411" gene 1218285..1219262 /locus_tag="Alide2_1167" /db_xref="GeneID:10482194" CDS 1218285..1219262 /locus_tag="Alide2_1167" /inference="similar to AA sequence:KEGG:Vapar_1676" /note="KEGG: vap:Vapar_1676 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387087.1" /db_xref="GI:330823784" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482194" /translation="MRLLKRLKFAWGLACLGLACVAPGVQAQDAWPTKTVRIVVPFPA GGASTDGMARAFAQELAKELKNPVIVENRPGGGTSVATLAVKAQPADGHTLLFQADGL FNAKLATPELAYEASEFDIISPLAQTNYALIVPASRGWKRLEDLQGLTRELDLGTLGI GVSSYSMLAARMAAHLRIKHRMVPYKGGVEGVTAVITGEIDGYFATVGLTQTVKDNPK VKVLAYTGAPGRNTFMPGVKTFHELGMADMVFNSYYGLAVRADTPARIKGLLSATARK VVDSEAMKAARQRLHLEDYVGSTEDYRRDVARMFKQYEAEFAEGAKAGK" sig_peptide 1218285..1218368 /locus_tag="Alide2_1167" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 28" misc_feature 1218303..1219223 /locus_tag="Alide2_1167" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1218438..1219196 /locus_tag="Alide2_1167" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1219309..1220058 /locus_tag="Alide2_1168" /db_xref="GeneID:10482195" CDS 1219309..1220058 /locus_tag="Alide2_1168" /inference="protein motif:PFAM:PF01012" /note="KEGG: dia:Dtpsy_2299 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein subunit alpha/beta" /protein_id="YP_004387088.1" /db_xref="GI:330823785" /db_xref="InterPro:IPR014730" /db_xref="GeneID:10482195" /translation="MKALVPVKRVVDYNVKVRVKSDNTGVDIANVKMSMNPFDEIAVE EAVRLKEKGAVSEVIAVSCGVAACQETLRTAMAIGADRAILVETDAELQPLAVAKLLK ALVDKEQPGLVILGKQAIDDDCSQTGQMLAALADLPQATFASKMEVAGDKATVTREVD GGLETLSLGLPAVVTTDLRLNEPRYVTLPNIMKAKKKPLETLKPEDLGVDAAPRIKTL KVSEPSKRGAGIKVPDVATLVDKLKNEAKVI" misc_feature 1219312..1219917 /locus_tag="Alide2_1168" /note="The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714" /db_xref="CDD:30169" misc_feature order(1219324..1219329,1219414..1219416,1219423..1219425, 1219495..1219497,1219651..1219656,1219660..1219665, 1219678..1219689) /locus_tag="Alide2_1168" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:30169" gene 1220073..1221005 /locus_tag="Alide2_1169" /db_xref="GeneID:10482196" CDS 1220073..1221005 /locus_tag="Alide2_1169" /inference="protein motif:PFAM:PF00766" /note="KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein subunit alpha" /protein_id="YP_004387089.1" /db_xref="GI:330823786" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR014731" /db_xref="GeneID:10482196" /translation="MTALVIAEHDNTSIKGATLNAVTAAAACGGDVHMLVAGHNAGAA AAAAAQIAGVSKVIHADGDSQAHGLAESLAAQVLAIASGYSHILFPATASGKNAAPRV AAKLDVAQFSDITKVVSADTFERPIYAGNVIATVQSADATKVITVRTTGFDAAAATGG SAAVENVAAVPASSRSQFVGSEIAKSDRPELTAAKIIVSGGRALGSAEKFNEVMNPLA DKLGAAIGASRAAVDAGYAPNDLQVGQTGKIVAPQLYVAAGISGAIQHLAGMKDSKVI VAINKDSEVPIFSVADYGLEADLFTAVPELVRAL" misc_feature 1220076..1221002 /locus_tag="Alide2_1169" /note="electron transfer flavoprotein subunit alpha; Provisional; Region: PLN00022" /db_xref="CDD:177660" misc_feature 1220082..1220516 /locus_tag="Alide2_1169" /note="The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_alpha; cd01715" /db_xref="CDD:30170" misc_feature 1220634..1220894 /locus_tag="Alide2_1169" /note="Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766" /db_xref="CDD:189709" gene complement(1221313..1222428) /locus_tag="Alide2_1170" /db_xref="GeneID:10482197" CDS complement(1221313..1222428) /locus_tag="Alide2_1170" /inference="protein motif:PFAM:PF00441" /note="PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: reh:H16_B0372 pimeloyl-CoA dehydrogenase (small subunit)" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004387090.1" /db_xref="GI:330823787" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482197" /translation="MNFETSDELKTVRDSLARVLADHYTPTHRQAMVGDETAYAAQAW KEMAGLGLAGLQVPEAFDGLDFQATDLLPLFHELGQALAPVPFLSTSVLGATALQACS DAEVQRELLPPLAAGALQVTCPHGFVPAASGVRAQAQGSGWRLEGVHKHMPYAASADW LVVSARTGDGAGGDACLFLVARHAPGVRLRPYRLIDGTPAADVHLEGAEATALCTPGS AQAHEAMEAANAAGIAAACAEMVGAMEAALRLTVDYVKTRQQFGRAIGENQALRHRIA EMLVALETARSMSIAAAVAVRDGGFAKAQTRADLHRAKFLVGRNARTVCQSAIQLHGG IGMTEEYTVGHYLRRVHVLDQQFGDGASHLKQLARVE" misc_feature complement(1221325..1222425) /locus_tag="Alide2_1170" /note="pimeloyl-CoA dehydrogenase, small subunit; Region: pimD_small; TIGR03203" /db_xref="CDD:132247" misc_feature complement(1222078..1222413) /locus_tag="Alide2_1170" /note="Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771" /db_xref="CDD:190417" misc_feature complement(1221322..1222152) /locus_tag="Alide2_1170" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature complement(order(1221346..1221348,1221352..1221354, 1221358..1221366,1221967..1221969,1221973..1221975, 1222066..1222068,1222072..1222074,1222150..1222152)) /locus_tag="Alide2_1170" /note="active site" /db_xref="CDD:173838" gene complement(1222437..1223585) /locus_tag="Alide2_1171" /db_xref="GeneID:10482198" CDS complement(1222437..1223585) /locus_tag="Alide2_1171" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: rme:Rmet_5530 acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004387091.1" /db_xref="GI:330823788" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482198" /translation="MTMDIAFTLEQQTFREEVRAFIAARLPSSIRERLRQGHLPNRED TITWQRILAERGWSAPHWPKEYGGAALSQAERLILLDELYRAPAPLPQIFNMNMLGPV LMKFGTSRQREHFLPKLANLDLWFCQGFSEPGAGSDLAALRTSARREGDFYIVNGQKT WTSTAQWADWIFALVRTDPQARKQAGISFLLIDLKSPGITVRPIRSIDGTNHVNEVFF EEVKVPASQLVGEENQGWECAKFLLANERTGIANVGLCQERLELAREMAHAGALAQDP VLQREFAVFDAEIRALELTNARFLLTPSEQVALPAFASVLKLKGTEIQQELHMLLAKL AGEDGLEQPESAEHGPHLVQRYLFSRALSIYGGTSEIQKDILARTVLA" misc_feature complement(1222440..1223576) /locus_tag="Alide2_1171" /note="pimeloyl-CoA dehydrogenase, large subunit; Region: pimC_large; TIGR03204" /db_xref="CDD:132248" misc_feature complement(1222443..1223558) /locus_tag="Alide2_1171" /note="Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Region: ACAD_fadE6_17_26; cd01152" /db_xref="CDD:173841" misc_feature complement(order(1223097..1223099,1223103..1223105, 1223175..1223180,1223193..1223198,1223202..1223204)) /locus_tag="Alide2_1171" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:173841" misc_feature complement(order(1222452..1222454,1222485..1222490, 1223031..1223033,1223175..1223177)) /locus_tag="Alide2_1171" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173841" misc_feature complement(1222848..1222850) /locus_tag="Alide2_1171" /note="catalytic base [active]" /db_xref="CDD:173841" gene 1223800..1224756 /locus_tag="Alide2_1172" /db_xref="GeneID:10482199" CDS 1223800..1224756 /locus_tag="Alide2_1172" /inference="similar to AA sequence:KEGG:Vapar_5507" /note="KEGG: vap:Vapar_5507 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387092.1" /db_xref="GI:330823789" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482199" /translation="MKSLIRLLLLLVTAVTCGFASAQPVTKIVVPFAAGGGTDVYVRL LASEITKAGVPVIVENKPGASGNIAADYVAKSRPDGHTVFVGTNSTMANNTVLFEKLP YDPLKDFVPVSHIGYQPMIIVARTDLPYGTLQEMVAYAKANPGKINRGSPGAGIISNL APLMFERQAGIRTTHVPFNGDAPGLQALLSGSIDIHGTSITASLPHVQSGKIRVLGVM DHKRMSQVPNAPTFKEAGYDLEAYAWYALVAPAGTPREAVERLNKAVNDVLVREDFVA KAQAMGMEPRGGSPDDLGKYIRKEYDRWVPLLKKLELTKSTY" misc_feature 1223800..1224744 /locus_tag="Alide2_1172" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" sig_peptide 1223800..1223868 /locus_tag="Alide2_1172" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 23" misc_feature 1223926..1224738 /locus_tag="Alide2_1172" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1225217..1225306) /locus_tag="Alide2_R0014" /note="tRNA-Ser5" /db_xref="GeneID:10482200" tRNA complement(1225217..1225306) /locus_tag="Alide2_R0014" /product="tRNA-Ser" /db_xref="GeneID:10482200" gene complement(1225513..1225884) /locus_tag="Alide2_1173" /db_xref="GeneID:10482201" CDS complement(1225513..1225884) /locus_tag="Alide2_1173" /inference="protein motif:PFAM:PF04430" /note="PFAM: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3; KEGG: dia:Dtpsy_2561 protein of unknown function DUF498" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387093.1" /db_xref="GI:330823790" /db_xref="InterPro:IPR007523" /db_xref="GeneID:10482201" /translation="MKFQPDRFDVQTITAYGPGWINVDADRIEHSIIVGARGQRIAWD CSRFEDLAPAHFAQLAELDAEVVIFGSGTRNRFPPPAWLQPLMARRIGLETMDTLAAC RTYNILAGEGRNVIAALLLEA" misc_feature complement(1225525..1225851) /locus_tag="Alide2_1173" /note="Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome...; Region: Xcc1710_like; cd05560" /db_xref="CDD:88593" gene 1226003..1227235 /locus_tag="Alide2_1174" /db_xref="GeneID:10482202" CDS 1226003..1227235 /locus_tag="Alide2_1174" /EC_number="2.6.1.1" /inference="protein motif:PRIAM:2.6.1.1" /note="KEGG: dia:Dtpsy_2560 aminotransferase AlaT; PFAM: Aminotransferase, class I/classII" /codon_start=1 /transl_table=11 /product="aspartate transaminase" /protein_id="YP_004387094.1" /db_xref="GI:330823791" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10482202" /translation="MKPIHKSAKLNNVLYDVRGPIVDAAKQMEDEGQKIIKLNIGNMA PFGFDAPEEIQQDMIRNLPNSAGYSDSKGIFAARKAVMHYTQQLGIAGVTLDDIYLGN GASELIVMATNALLDDGDELLVPMPDYPLWTAATSLSGGTPVHYRCDEDAGWLPDLDD MRAKITPRTRGIVVINPNNPTGVLYPDSLLRGIIGIAREHNLVLMVDEVYDKVLYDGV KFTSMASLSTDVLTLTFNSLSKAYRSCGYRAGWMVVSGPKADARDYIEGLNMLANLKL GSNVPGQWAIQTALGGYQSINDLVREGGRLRRQRDLAYELITAIPGVACVKPQAALYM FPRLDPAMYPIADDRQFFMEVLRATRVMLVQGSGFNYPDNQHFRIVFLPHEDDLREAV SRLAGFLAAYRQRHAKAA" misc_feature 1226003..1227196 /locus_tag="Alide2_1174" /note="alanine aminotransferase; Provisional; Region: PTZ00377" /db_xref="CDD:185585" misc_feature 1226108..1227190 /locus_tag="Alide2_1174" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(1226309..1226317,1226387..1226389,1226537..1226539, 1226630..1226632,1226711..1226713,1226717..1226722, 1226744..1226746) /locus_tag="Alide2_1174" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(1226318..1226320,1226417..1226419,1226609..1226611, 1226738..1226746,1226846..1226848,1226855..1226857) /locus_tag="Alide2_1174" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 1226720..1226722 /locus_tag="Alide2_1174" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 1227307..1228641 /locus_tag="Alide2_1175" /db_xref="GeneID:10482203" CDS 1227307..1228641 /locus_tag="Alide2_1175" /EC_number="1.1.1.3" /inference="protein motif:PRIAM:1.1.1.3" /note="KEGG: ajs:Ajs_3206 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT" /codon_start=1 /transl_table=11 /product="Homoserine dehydrogenase" /protein_id="YP_004387095.1" /db_xref="GI:330823792" /db_xref="InterPro:IPR001342" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR005106" /db_xref="GeneID:10482203" /translation="MKPIQVGLLGIGTVGSGVFNVLQRNQEEIHRRAGRGIEIAMVAD LDAERARSIVGDKARVVGDAREVIANPEIDIVVELIGGYGIAKQLVLEAVAAGKHVVT ANKALLAVHGTEIFKAAAEKGVVVAYEAAVAGGIPIIKALREGLAANQIQWVAGIING TTNFILSEMRDKGLDFDVVLKEAQRLGYAEADPTFDIEGVDAAHKATIMSAIAFGIPV QFDKAYVEGITKLAATDIRYAEQLGYRIKLLGITKRMDKGVELRVHPSLVPAKRLIAN VEGAMNAVVVHGDAVGTTLYYGKGAGSEPTASAVIADLVDITRLIEADPTHRVPPLAF QSHTLREAGQDLPVLPMAEVVTSYYLRIRVADEAGVLARITGILAGGGISIDAVLQRE ADEVGGEGSTQTDLIILTHDTREGDMDAVLAQIQGLPTVLAPITRIRKEELN" misc_feature 1227307..1228629 /locus_tag="Alide2_1175" /note="homoserine dehydrogenase; Provisional; Region: PRK06349" /db_xref="CDD:180538" misc_feature 1227334..1227633 /locus_tag="Alide2_1175" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1227715..1228251 /locus_tag="Alide2_1175" /note="Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742" /db_xref="CDD:189696" misc_feature 1228378..1228629 /locus_tag="Alide2_1175" /note="ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains; Region: ACT_HSDH-Hom; cd04881" /db_xref="CDD:153153" gene 1228685..1228948 /locus_tag="Alide2_1176" /db_xref="GeneID:10482204" CDS 1228685..1228948 /locus_tag="Alide2_1176" /inference="protein motif:TFAM:TIGR01552" /note="KEGG: bts:Btus_3191 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_004387096.1" /db_xref="GI:330823793" /db_xref="InterPro:IPR006442" /db_xref="GeneID:10482204" /translation="MNAVWQVQEAKNRFSEVIERALREGPQTVTRHGKPVVRVVAVAG ETHEPHADDGFVEFLLNAPKIEGGLPEMPRDVSAGRAPLFGEE" misc_feature 1228694..>1228813 /locus_tag="Alide2_1176" /note="Phd_YefM; Region: PhdYeFM; cl09153" /db_xref="CDD:195806" gene 1228954..1229382 /locus_tag="Alide2_1177" /db_xref="GeneID:10482205" CDS 1228954..1229382 /locus_tag="Alide2_1177" /inference="protein motif:PFAM:PF01850" /note="PFAM: PilT protein, N-terminal; KEGG: geo:Geob_1146 PilT protein domain protein" /codon_start=1 /transl_table=11 /product="PilT protein domain-containing protein" /protein_id="YP_004387097.1" /db_xref="GI:330823794" /db_xref="InterPro:IPR002716" /db_xref="GeneID:10482205" /translation="MRWLLDTCTLSETICPQPHPGVVDWLRRHGDDAAVAAASFGEIR YGIACLPPSAKRNQLQAWANALAQQFDGRILDTDEVVWQQFGELKASLRAMGRMQDAL DIVIAATALRHGLALVTRNTRHFEDTGIRLVNPWADAPGA" misc_feature 1228963..1229355 /locus_tag="Alide2_1177" /note="PIN domain of ribonucleases (toxins), VapC and FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus horikoshii protein PH0500, and other similar bacterial and archaeal homologs; Region: PIN_VapC-FitB; cd09881" /db_xref="CDD:189051" misc_feature order(1228966..1228974,1228981..1228986,1228990..1228998, 1229020..1229022,1229029..1229031,1229050..1229052, 1229062..1229067,1229071..1229079,1229083..1229091, 1229125..1229127,1229134..1229136,1229173..1229175, 1229179..1229187,1229200..1229202,1229206..1229211, 1229218..1229223,1229230..1229232,1229251..1229253, 1229257..1229262,1229266..1229271,1229326..1229328) /locus_tag="Alide2_1177" /note="oligomeric interface; other site" /db_xref="CDD:189051" misc_feature order(1228969..1228971,1229077..1229079,1229260..1229262, 1229314..1229316) /locus_tag="Alide2_1177" /note="putative active site [active]" /db_xref="CDD:189051" misc_feature order(1229062..1229067,1229074..1229079,1229083..1229088, 1229128..1229133,1229140..1229142,1229182..1229184, 1229197..1229202,1229206..1229214,1229218..1229223, 1229254..1229259,1229263..1229265) /locus_tag="Alide2_1177" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:189051" gene 1229393..1230823 /locus_tag="Alide2_1178" /db_xref="GeneID:10482206" CDS 1229393..1230823 /locus_tag="Alide2_1178" /EC_number="4.2.3.1" /inference="protein motif:TFAM:TIGR00260" /note="TIGRFAM: Threonine synthase; KEGG: dia:Dtpsy_2558 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit" /codon_start=1 /transl_table=11 /product="threonine synthase" /protein_id="YP_004387098.1" /db_xref="GI:330823795" /db_xref="GO:0004795" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR004450" /db_xref="GeneID:10482206" /translation="MNYLSTRGDATPRKFCDILLEGLAPDGGLYLPERYPQVSDAQLT ELRGAYRSQGYAELAFRILSLYIDDIPPADLKRLCEKTYMAEVFGTREIVPLRHLEEG LWIEALSNGPTLAFKDMAMQLLGNLFEYELARRGEQLNILGATSGDTGSAAEYAMRGK RGVRVFMTSPHGRMSPFQQAQMFSLQDANIHNLAIEGVFDDCQDIVKAVSSDHAFKAR YKIGTVNSINWARLLAQVVYYFAGYFQATQTNAQKVSFTVPSGNFGNICAGHVARQMG LPIDRLVVATNENDVLDEFFRTGAYRVRGAADTHETSSPSMDISKASNFERFVFDLVG RDGARTRQLFAEGVARQGFFDLGTDPVFQDARAKYGFESGKSTHADRLATIRDTYERF GQIIDTHTADGVKVARERRGDPAVPMIVLETALPIKFAETIQEALGRAPERPAKFEGI EQLPKRVQVLPADAERVKAYIAAHCD" misc_feature 1229393..1230814 /locus_tag="Alide2_1178" /note="Threonine synthase [Amino acid transport and metabolism]; Region: ThrC; COG0498" /db_xref="CDD:30844" misc_feature 1229399..1230802 /locus_tag="Alide2_1178" /note="Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants...; Region: Thr-synth_2; cd01560" /db_xref="CDD:107203" misc_feature order(1229741..1229743,1230173..1230178,1230659..1230661) /locus_tag="Alide2_1178" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107203" misc_feature 1229741..1229743 /locus_tag="Alide2_1178" /note="catalytic residue [active]" /db_xref="CDD:107203" gene 1230897..1231448 /locus_tag="Alide2_1179" /db_xref="GeneID:10482207" CDS 1230897..1231448 /locus_tag="Alide2_1179" /inference="protein motif:TFAM:TIGR00176" /note="TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB), conserved domain; KEGG: dia:Dtpsy_2557 molybdopterin-guanine dinucleotide biosynthesis protein B" /codon_start=1 /transl_table=11 /product="molybdopterin-guanine dinucleotide biosynthesis protein B" /protein_id="YP_004387099.1" /db_xref="GI:330823796" /db_xref="GO:0005525" /db_xref="InterPro:IPR004435" /db_xref="GeneID:10482207" /translation="MKVVGFAGYSGSGKTTLVEQLIPELRLHGLRVSVVKHAHHKFDI DHVGKDSWRHREAGAYEVAVASDRRMALMREFERAHAPSVHELLAELDPRADWVLVEG FKDSDLPKVEIWRAPSPEYHERPALYPHDPCIVAVATDASALPAPTALPVLDVRNPHA VAQWLLAQGARFDYVPQRVEVCE" misc_feature 1230897..1231394 /locus_tag="Alide2_1179" /note="Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa...; Region: MobB; cd03116" /db_xref="CDD:48380" misc_feature order(1230918..1230920,1230933..1230941) /locus_tag="Alide2_1179" /note="Walker A motif; other site" /db_xref="CDD:48380" gene 1231445..1232692 /locus_tag="Alide2_1180" /db_xref="GeneID:10482208" CDS 1231445..1232692 /locus_tag="Alide2_1180" /inference="protein motif:TFAM:TIGR00177" /note="TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; MoeA, C-terminal, domain IV; Molybdopterin binding; KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain-containing protein; SMART: Molybdopterin binding" /codon_start=1 /transl_table=11 /product="molybdenum cofactor synthesis domain-containing protein" /protein_id="YP_004387100.1" /db_xref="GI:330823797" /db_xref="InterPro:IPR001453" /db_xref="InterPro:IPR005110" /db_xref="InterPro:IPR005111" /db_xref="InterPro:IPR020817" /db_xref="GeneID:10482208" /translation="MTTQAKSQARAPLKPLDEALADLLAQAAPLSGTDTVSTFDADGR VLAQPAISPLQVPPQDNSSMDGYAVRRADVTAAGVELPVAQRIAAGGCGTPLAAGTAA RIFTGAPVPEGADAIVMQEDCEALDGGARVRVNAVPAAGQWIRRAGEDIALGAQVLAA GTRLTPAELGLAASIGLASLQVARRPRVALFSTGDELVMPGEVPPAQMKPGAIYNSNR FFLRAMLLRLGCEVSDLGIVPDRREATVAALREAAQGNDLILTSGGVSVGEEDHIKPA VESLGRLDLWQIAMKPGKPFAYGRIGGAHFMGLPGNPVSSFVTFGLLVRPFLLRLQGV RDVAPKAIAASAGFDWPRADKRREFLRVRHAADGTLELFANQSSGVLTSAAWADGVVD NPAGQTIARGNRVRFLPFVELLS" misc_feature 1231538..1232674 /locus_tag="Alide2_1180" /note="MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887" /db_xref="CDD:58168" misc_feature 1231541..1232683 /locus_tag="Alide2_1180" /note="Molybdopterin biosynthesis enzyme [Coenzyme metabolism]; Region: MoeA; COG0303" /db_xref="CDD:30651" misc_feature order(1231559..1231561,1231892..1231894,1231937..1231948, 1231952..1231954,1231961..1231966,1231970..1231972, 1232084..1232086,1232090..1232092,1232099..1232101, 1232468..1232470,1232579..1232581,1232660..1232662) /locus_tag="Alide2_1180" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58168" misc_feature order(1232021..1232026,1232030..1232032,1232162..1232164, 1232234..1232236) /locus_tag="Alide2_1180" /note="putative functional site; other site" /db_xref="CDD:58168" misc_feature order(1232234..1232242,1232372..1232377,1232387..1232389, 1232396..1232398) /locus_tag="Alide2_1180" /note="putative MPT binding site; other site" /db_xref="CDD:58168" gene 1232689..1232949 /locus_tag="Alide2_1181" /db_xref="GeneID:10482209" CDS 1232689..1232949 /locus_tag="Alide2_1181" /inference="protein motif:TFAM:TIGR01682" /note="KEGG: dia:Dtpsy_2555 molybdopterin converting factor, subunit 1; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiamineS" /codon_start=1 /transl_table=11 /product="molybdopterin converting factor subunit 1" /protein_id="YP_004387101.1" /db_xref="GI:330823798" /db_xref="InterPro:IPR003749" /db_xref="InterPro:IPR010034" /db_xref="GeneID:10482209" /translation="MTLKTIQVRYFASIREAVGTGHETLQTGADTLGALRDELIARGE PWAGCLARGRAVRMALNQVMAQDTTPLAPGAEAAFFPPVTGG" misc_feature 1232704..1232946 /locus_tag="Alide2_1181" /note="Ubiquitin domain of MoaD-like proteins; Region: MoaD; cd00754" /db_xref="CDD:176354" misc_feature order(1232719..1232727,1232731..1232736,1232869..1232871, 1232914..1232916,1232929..1232937,1232944..1232946) /locus_tag="Alide2_1181" /note="MoaE interaction surface [polypeptide binding]; other site" /db_xref="CDD:176354" misc_feature order(1232719..1232724,1232731..1232736,1232929..1232931, 1232935..1232937,1232944..1232946) /locus_tag="Alide2_1181" /note="MoeB interaction surface [polypeptide binding]; other site" /db_xref="CDD:176354" misc_feature 1232944..1232946 /locus_tag="Alide2_1181" /note="thiocarboxylated glycine; other site" /db_xref="CDD:176354" gene complement(1232936..1233838) /locus_tag="Alide2_1182" /db_xref="GeneID:10482210" CDS complement(1232936..1233838) /locus_tag="Alide2_1182" /EC_number="4.2.1.52" /inference="protein motif:TFAM:TIGR00674" /note="TIGRFAM: Dihydrodipicolinate synthase subfamily; KEGG: dac:Daci_5213 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_004387102.1" /db_xref="GI:330823799" /db_xref="GO:0008840" /db_xref="InterPro:IPR002220" /db_xref="InterPro:IPR005263" /db_xref="GeneID:10482210" /translation="MSSPHPSAGFSGLWIPLVTPFDGDGAIDHAALRALVQRLRSGGI AGVVACGSTGEAAALDTAEQDAALDAVLAAAPGLPVVMGLSGYHLGHVLERVRGWNTR PLAGLLVPAPHYIRPSQAGLLQWFRTIADASMHPLIIYDIPYRTGATLELATLQALAE HPRIRAIKDCGGDAAKTQALISGGRLQVLAGEDAQILSTLALGGSGAIAASAHWQPAR FAELMRCVATGDLPRARALWQALLPVVQACFTEPNPAPIKALLAQQGEMGASLRAPME HASTGLARRLAALAAAQEAALNRL" misc_feature complement(1232999..1233820) /locus_tag="Alide2_1182" /note="Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329" /db_xref="CDD:30677" misc_feature complement(1233014..1233811) /locus_tag="Alide2_1182" /note="Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950" /db_xref="CDD:188637" misc_feature complement(order(1233017..1233019,1233023..1233025, 1233077..1233082,1233404..1233406,1233410..1233412, 1233497..1233505,1233572..1233574,1233578..1233580, 1233674..1233688)) /locus_tag="Alide2_1182" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188637" misc_feature complement(order(1233260..1233262,1233266..1233268, 1233335..1233337,1233404..1233406,1233419..1233421, 1233680..1233685)) /locus_tag="Alide2_1182" /note="active site" /db_xref="CDD:188637" misc_feature complement(1233335..1233337) /locus_tag="Alide2_1182" /note="catalytic residue [active]" /db_xref="CDD:188637" gene complement(1234103..1234423) /locus_tag="Alide2_1183" /db_xref="GeneID:10482211" CDS complement(1234103..1234423) /locus_tag="Alide2_1183" /inference="similar to AA sequence:KEGG:Dtpsy_2554" /note="KEGG: dia:Dtpsy_2554 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387103.1" /db_xref="GI:330823800" /db_xref="GeneID:10482211" /translation="MQAMHDGDNQILVPSSFIALYSDARQRLLAPADEVRARYELCED LACHLVEQAQQLYHGGARSEEGVLLGIHAGLAAPGACVSPQEARWITLRLAELLDWRS PALA" gene complement(1234497..1234640) /locus_tag="Alide2_1184" /db_xref="GeneID:10482212" CDS complement(1234497..1234640) /locus_tag="Alide2_1184" /inference="protein motif:PFAM:PF11346" /note="PFAM: Protein of unknown function DUF3149; KEGG: dia:Dtpsy_2553 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387104.1" /db_xref="GI:330823801" /db_xref="InterPro:IPR021494" /db_xref="GeneID:10482212" /translation="MQLLKQLFTTDVGLFSAVGIGFMLCMLGFFVWLFTRNDAPKAGD KQP" gene complement(1234753..1235007) /locus_tag="Alide2_1185" /db_xref="GeneID:10482213" CDS complement(1234753..1235007) /locus_tag="Alide2_1185" /inference="similar to AA sequence:KEGG:Dtpsy_2552" /note="KEGG: dia:Dtpsy_2552 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387105.1" /db_xref="GI:330823802" /db_xref="GeneID:10482213" /translation="MALQTITTADYTLYPSPRNTHHVVFEFQTFVPQPYALIDLPSFG LAGRCSLFAAHRRADGKMGQLVTFELEVDQQRFERLFVPD" gene 1235064..1235540 /locus_tag="Alide2_1186" /db_xref="GeneID:10482214" CDS 1235064..1235540 /locus_tag="Alide2_1186" /inference="protein motif:PFAM:PF02391" /note="PFAM: Molybdopterin biosynthesis MoaE; KEGG: ajs:Ajs_3199 molybdopterin synthase subunit MoaE" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis MoaE protein" /protein_id="YP_004387106.1" /db_xref="GI:330823803" /db_xref="InterPro:IPR003448" /db_xref="GeneID:10482214" /translation="MTRVSIQTQDFDVSAELAALRARDARVGAVCCFVGTVRDRNDGD AVATMELEHYPGMTEQSIEAMIDEAFARFDLYGVRVIHRVGLLAPLDQIVLVAVTSAH RGESFQACEFLMDYLKTQAPFWKKEATPQGARWVDARVSDDAALARWGIAAPPQAG" misc_feature 1235160..1235471 /locus_tag="Alide2_1186" /note="MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoaE; cd00756" /db_xref="CDD:58647" misc_feature order(1235160..1235165,1235169..1235171,1235175..1235177, 1235337..1235339,1235364..1235366,1235370..1235372, 1235394..1235396,1235406..1235408) /locus_tag="Alide2_1186" /note="MoaE homodimer interface [polypeptide binding]; other site" /db_xref="CDD:58647" misc_feature order(1235217..1235219,1235223..1235225,1235232..1235234, 1235241..1235243,1235253..1235255,1235307..1235309, 1235415..1235420,1235424..1235426,1235430..1235438, 1235466..1235468) /locus_tag="Alide2_1186" /note="MoaD interaction [polypeptide binding]; other site" /db_xref="CDD:58647" misc_feature order(1235415..1235417,1235436..1235438) /locus_tag="Alide2_1186" /note="active site residues [active]" /db_xref="CDD:58647" gene 1235608..1238211 /locus_tag="Alide2_1187" /db_xref="GeneID:10482215" CDS 1235608..1238211 /locus_tag="Alide2_1187" /inference="protein motif:TFAM:TIGR03346" /note="TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_2550 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="ATP-dependent chaperone ClpB" /protein_id="YP_004387107.1" /db_xref="GI:330823804" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR004176" /db_xref="InterPro:IPR013093" /db_xref="InterPro:IPR017730" /db_xref="InterPro:IPR019489" /db_xref="GeneID:10482215" /translation="MRLDKLTTKFQEALSDAQSLALGHDNAYIEPVHLLAAMLRQEDG PRALLERAGANVPGLLKASEAAIKRLPQVQGHDQVQASPELGRVLQATEKEAIQRGDQ FIASELFLLALVDSKGEAAQIAKDNGLTRKSLEAAIDAVRGGQKVDSAEAEGQREALK KYTLDLTERARQGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA QRIVAGEVPETLKNKRVLVLDMAGLLAGAKYRGEFEERLKSVLKEVAQDEGRIILFID EIHTMVGAGKAEGAIDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKV LVEEPSVEDTIAILRGLQVRYEAHHGVDITDPAIVAAAELSHRYITDRFLPDKAIDLI DEAAARIKIEIDSKPEALDKLERRMIQLKIEREAMKKETDEASQKRLQLIEEELANAE REYADLEEVWKAEKASAQGSEQIRKDIDAIRIQIEDLKRKGDYNRVAELQYGKLPELE KRLKEAQDSEAGGGAPRHQLLRTHVGAEEIAEVVSRATGIPVAKMMQGEKDKLLHMEE KLHERVVGQDEAISAVANAIRRSRSGLSDPNRPLGSFLFLGPTGVGKTELCKALAGFL FDSEEHMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVLLLDEVE KAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSPLIQAMVGQDAEDIKE AVWGELKSHFRPEFLNRIDETVVFHGLDAKHIEAIARIQLRLLEARLAKMDLSLQVSP AAMGELAKVGFDPVFGARPLKRAIQQRIENPLSRLLLEGRYPPKSVIPVDVDPVKDPG VFHFGEARAAG" misc_feature 1235623..1238124 /locus_tag="Alide2_1187" /note="ATP-dependent chaperone ClpB; Region: chaperone_ClpB; TIGR03346" /db_xref="CDD:163223" misc_feature 1235656..1235811 /locus_tag="Alide2_1187" /note="Clp amino terminal domain; Region: Clp_N; pfam02861" /db_xref="CDD:190453" misc_feature 1235884..1236036 /locus_tag="Alide2_1187" /note="Clp amino terminal domain; Region: Clp_N; pfam02861" /db_xref="CDD:190453" misc_feature 1236142..1236624 /locus_tag="Alide2_1187" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1236217..1236240 /locus_tag="Alide2_1187" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1236220..1236243,1236433..1236435,1236544..1236546) /locus_tag="Alide2_1187" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1236421..1236438 /locus_tag="Alide2_1187" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1236595..1236597 /locus_tag="Alide2_1187" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1237324..1237899 /locus_tag="Alide2_1187" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1237426..1237449 /locus_tag="Alide2_1187" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1237429..1237452,1237642..1237644,1237768..1237770) /locus_tag="Alide2_1187" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1237630..1237647 /locus_tag="Alide2_1187" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1237876..1237878 /locus_tag="Alide2_1187" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1237906..1238124 /locus_tag="Alide2_1187" /note="C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431" /db_xref="CDD:192583" gene 1238227..1238589 /locus_tag="Alide2_1188" /db_xref="GeneID:10482216" CDS 1238227..1238589 /locus_tag="Alide2_1188" /inference="similar to AA sequence:KEGG:Dtpsy_2549" /note="KEGG: dia:Dtpsy_2549 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387108.1" /db_xref="GI:330823805" /db_xref="GeneID:10482216" /translation="MRGPWPARPDVRKGHGLNEVVAGVIRWALRLVVFAMGVVLFLSL VVAAAVLALVWGLRALWARLTGRSAMPWTMRMDPRTGWSTVYRSTARWTAQASSERRR SEAGGVHDITDVVPREIP" gene 1238709..1240169 /locus_tag="Alide2_1189" /db_xref="GeneID:10482217" CDS 1238709..1240169 /locus_tag="Alide2_1189" /EC_number="1.2.1.68" /inference="protein motif:PRIAM:1.2.1.68" /note="KEGG: dia:Dtpsy_2547 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain" /codon_start=1 /transl_table=11 /product="Coniferyl-aldehyde dehydrogenase" /protein_id="YP_004387109.1" /db_xref="GI:330823806" /db_xref="InterPro:IPR015590" /db_xref="GeneID:10482217" /translation="MTPDDIRNLFDLQRQASRAQPDVPLMVRRERLLRMRKLLDEHGP ALAAAVQADFGMRSPRLTEVADLFVLRSQLAHTLRHLARWCRRTRVRTPLFLQPARGW IERQPLGVVGVISPWNYPVQLALAPAIGALAAGNRVMLKPSELTPHTSAQLAALVSQF FAPDEFCVVQGDAATAALVASLPFDHLVFTGSTAVGRRVAQAAAANLTPTTLELGGKS PAIIDADCDMADAALKIAHGKLLNAGQTCIAPDYVMLPRGSEAAFADAFRAAVARLFP YFEGNPDYASIISPRHLARLRTMLQQAQTLGAEVHAMEPVPGSPPPPPQGIGDGVGRQ MAPVLVFGATPGMQLMQEEIFGPVLPVLSYERLDDAIAHINARPRPLALYWFGRSEAV QGDVLRRTVSGGVSVNDTLMHIAHDNLPFGGVGDSGWGAYHAEAGFLRFCHQKPVLAQ SRWSLGHLLYPPYGARFDRIMALLRRLMQGGLNGQG" misc_feature 1238712..1240049 /locus_tag="Alide2_1189" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature 1238727..1240052 /locus_tag="Alide2_1189" /note="NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961" /db_xref="CDD:196287" misc_feature order(1239048..1239062,1239084..1239086,1239129..1239131, 1239135..1239140,1239273..1239284,1239291..1239293, 1239300..1239305,1239345..1239353,1239447..1239449, 1239765..1239767,1239771..1239773,1239849..1239851, 1239969..1239971) /locus_tag="Alide2_1189" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143395" misc_feature order(1239060..1239062,1239345..1239347,1239438..1239440, 1239447..1239449) /locus_tag="Alide2_1189" /note="catalytic residues [active]" /db_xref="CDD:143395" gene 1240246..1240767 /locus_tag="Alide2_1190" /db_xref="GeneID:10482218" CDS 1240246..1240767 /locus_tag="Alide2_1190" /inference="protein motif:PFAM:PF00583" /note="KEGG: dia:Dtpsy_2546 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain" /codon_start=1 /transl_table=11 /product="GCN5-like N-acetyltransferase" /protein_id="YP_004387110.1" /db_xref="GI:330823807" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10482218" /translation="MSSIQVRPATLRDAKAIAQVHTIAAMEAYRGLLPDDQLKAMSSV EKRQAYWREAIEYCEPQVQVAVEGDKIVGFVGFDRSRDEKTRNTTGEIWAIYAAPSHW NKGVGLALWDAARDGLHEEGCTTVTAWVPLRNERALRFHEMAGFKREMTTAKTAVIGG VKVEEVRLKRSIN" misc_feature 1240264..1240755 /locus_tag="Alide2_1190" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" misc_feature 1240435..1240632 /locus_tag="Alide2_1190" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature order(1240528..1240536,1240564..1240569) /locus_tag="Alide2_1190" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 1240793..1241932 /locus_tag="Alide2_1191" /db_xref="GeneID:10482219" CDS 1240793..1241932 /locus_tag="Alide2_1191" /inference="protein motif:PFAM:PF05175" /note="PFAM: Methyltransferase small; KEGG: aav:Aave_1253 methyltransferase small" /codon_start=1 /transl_table=11 /product="methyltransferase small" /protein_id="YP_004387111.1" /db_xref="GI:330823808" /db_xref="GO:0008168" /db_xref="InterPro:IPR007848" /db_xref="GeneID:10482219" /translation="MIEWSERGEVRRALWRSESGAAAPRRVQPVDDTVAADIAYRLAC EGTALLWRGDFQNARQLLQALMRRADRRPAKAAARAAQKMAEASPAERFHLHRQAQAQ RTRTLGALLIPVEGDYSIALRRAPDWRTACTEAWGPASGEASAVALRELLGVVGAHEW RKKGVEVPALGDRIHPHYGVFSPVRGEYIDLVAQAPLPGTSLAFDIGTGTGVLAAVLA RRGVRRVVATELAPRALACAQDNLRRLGLQDRVELLAADLFPPGRAPLVVCNPPWLPA RPSSAIEQAVYDEGSRMLKGFLAGLREHLEPGGEGWLVLSDLAEHLGLRSREDLLGWI AAAGLCVLGRLDTRPRHGKAQDAGDPLHAARAAEVTSLWRLGATA" misc_feature 1241405..>1241746 /locus_tag="Alide2_1191" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1241988..1243007 /locus_tag="Alide2_1192" /db_xref="GeneID:10482220" CDS 1241988..1243007 /locus_tag="Alide2_1192" /inference="protein motif:PFAM:PF01207" /note="PFAM: tRNA-dihydrouridine synthase; KEGG: dia:Dtpsy_2544 dihydrouridine synthase DuS" /codon_start=1 /transl_table=11 /product="dihydrouridine synthase DuS" /protein_id="YP_004387112.1" /db_xref="GI:330823809" /db_xref="GO:0017150" /db_xref="GO:0050660" /db_xref="InterPro:IPR001269" /db_xref="GeneID:10482220" /translation="MITKAPARKPLLLAPMEGLLDFVLRDVLTRVGGVDRCVSEFIRV TGSLLPDKVFLRYLPELRNGGRTLAGVPVRAQLLGSDPVSMAENAARLAALGPEGIDL NFGCPARTVNRHGGGAALLREPEVIAAVVAAVRRAVPAHLPVSAKMRLGYDDAGRARE CAQAMEQGGACELVVHARTKADGYRPPAYWERIPEIREAVAIPVVANGEIWTVADALR CRGVSGCDALMLGRGMVADPGLALAIRAQDVGQGAFALPWAALLPQLARFWQLVCEDL EPRQRAGRLKQWLNLLRRRYPEAQRAFDEVRVMTEQRAIGAWVARAVELAATAGGRAP AGPAA" misc_feature 1242009..1242932 /locus_tag="Alide2_1192" /note="tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]; Region: COG0042" /db_xref="CDD:30391" misc_feature 1242015..1242728 /locus_tag="Alide2_1192" /note="Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and...; Region: DUS_like_FMN; cd02801" /db_xref="CDD:73368" misc_feature order(1242027..1242035,1242108..1242110,1242213..1242215, 1242294..1242296,1242426..1242428,1242513..1242515, 1242606..1242608,1242612..1242614,1242678..1242683) /locus_tag="Alide2_1192" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73368" misc_feature order(1242213..1242215,1242303..1242308,1242426..1242428, 1242432..1242434,1242510..1242515,1242519..1242524, 1242609..1242614,1242681..1242683) /locus_tag="Alide2_1192" /note="active site" /db_xref="CDD:73368" misc_feature order(1242303..1242305,1242432..1242434,1242513..1242515, 1242519..1242521) /locus_tag="Alide2_1192" /note="catalytic residues [active]" /db_xref="CDD:73368" misc_feature order(1242306..1242308,1242426..1242428,1242510..1242512, 1242522..1242524,1242609..1242614) /locus_tag="Alide2_1192" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73368" gene complement(1242967..1244577) /locus_tag="Alide2_1193" /db_xref="GeneID:10482221" CDS complement(1242967..1244577) /locus_tag="Alide2_1193" /inference="protein motif:PFAM:PF00614" /note="KEGG: dia:Dtpsy_2543 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase" /codon_start=1 /transl_table=11 /product="phospholipase D/transphosphatidylase" /protein_id="YP_004387113.1" /db_xref="GI:330823810" /db_xref="GO:0003824" /db_xref="InterPro:IPR001736" /db_xref="GeneID:10482221" /translation="MPAATTLPSPAACTPRRWCAIAWLALLCAGCAGLPKDVDRPVST ALDVAAQPTALAQLVQERRQAAGSRYASGFMLLSGPQEAYGSRLALVQSAQKTLDLQY YAIHADESSARLLRGVAAAARRGVRVRILLDDFHSTGRNALVMGMAFVPNVEMRMFNP VAGPRASALGRLWGSLADFQRVQQRMHNKLFIADNMMGVTGGRNLGDAYFGRSQAENF VDLDVLAAGPIVADMSRSFDSYWNNPRAYPVQSLITREELERLRAQVQPEGNGSPVAD APAPEQPAHAWDSQPMDLRTAEFTWAPAAMLADKPAKIPLDGDEAQEFGDTVVDGLLD LMAGTQRELLVISPYFVPGDDMLRAFAAARARGVRVRVLTNSLASNDAPIAHVGYARH RKALLAMGVELYELRSEQAGLRSALGSSGGAAGSSRAMLHSKVMVVDGRLLVVGSMNL DLRSQLQNTEIALLIRSRRLAAEAAGQIDAAMRQGAWRLEHQEEDRLVWHPPEGSGLQ DAHTDPDSSLGLRLLLRLLGPLAPDHLL" misc_feature complement(1243852..1244349) /locus_tag="Alide2_1193" /note="Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111" /db_xref="CDD:197210" misc_feature complement(order(1243918..1243920,1243966..1243968, 1243972..1243974,1244011..1244013,1244017..1244019)) /locus_tag="Alide2_1193" /note="putative active site [active]" /db_xref="CDD:197210" misc_feature complement(1244017..1244019) /locus_tag="Alide2_1193" /note="catalytic site [active]" /db_xref="CDD:197210" misc_feature complement(1243042..1243659) /locus_tag="Alide2_1193" /note="Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_2; cd09113" /db_xref="CDD:197212" misc_feature complement(order(1243198..1243200,1243231..1243233, 1243237..1243239,1243276..1243278,1243282..1243284)) /locus_tag="Alide2_1193" /note="putative active site [active]" /db_xref="CDD:197212" misc_feature complement(1243282..1243284) /locus_tag="Alide2_1193" /note="catalytic site [active]" /db_xref="CDD:197212" gene complement(1244601..1245713) /locus_tag="Alide2_1194" /db_xref="GeneID:10482222" CDS complement(1244601..1245713) /locus_tag="Alide2_1194" /EC_number="1.1.1.193" /EC_number="3.5.4.26" /inference="protein motif:TFAM:TIGR00326" /note="TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: dia:Dtpsy_2542 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein RibD" /protein_id="YP_004387114.1" /db_xref="GI:330823811" /db_xref="GO:0008703" /db_xref="GO:0008835" /db_xref="GO:0050661" /db_xref="InterPro:IPR002125" /db_xref="InterPro:IPR002734" /db_xref="InterPro:IPR004794" /db_xref="InterPro:IPR011549" /db_xref="GeneID:10482222" /translation="MTDAAPFITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGF TQQAGGPHAEVVALRDAAASGNDVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVV ASIEDPNPLVGGQGFARLRAAGIDVQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAA SLDGVTALANGTSQWITAPAARADGHAWRARACAVLTGIGTVLEDDPLLNVREVATPR QPHLVVVDSRLQTPLGARLFDVPGRRVFIYAADGHPDRAQALRARGATVIVLPNARGK VDLPAMLRDLGANGVNELHLEAGHKLNGSFLREGLVDELLLYLAPLLLGSGAHGLASW GPLQALADGVRMEFHGMQQLGPDLRLIARVAGRADF" misc_feature complement(1245342..1245650) /locus_tag="Alide2_1194" /note="Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284" /db_xref="CDD:29827" misc_feature complement(1244631..1245644) /locus_tag="Alide2_1194" /note="riboflavin biosynthesis protein RibD; Region: eubact_ribD; TIGR00326" /db_xref="CDD:161819" misc_feature complement(order(1245447..1245449,1245474..1245479, 1245552..1245560)) /locus_tag="Alide2_1194" /note="catalytic motif [active]" /db_xref="CDD:29827" misc_feature complement(order(1245447..1245449,1245474..1245476, 1245552..1245554,1245558..1245560)) /locus_tag="Alide2_1194" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:29827" misc_feature complement(1244616..1245269) /locus_tag="Alide2_1194" /note="Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-...; Region: DHFR; cl00161" /db_xref="CDD:193688" gene complement(1245751..1246185) /locus_tag="Alide2_1195" /db_xref="GeneID:10482223" CDS complement(1245751..1246185) /locus_tag="Alide2_1195" /inference="similar to AA sequence:KEGG:Dtpsy_2540" /note="KEGG: dia:Dtpsy_2540 fimbrial protein pilin" /codon_start=1 /transl_table=11 /product="fimbrial protein pilin" /protein_id="YP_004387115.1" /db_xref="GI:330823812" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10482223" /translation="MIQRMHEKQRGFTLIELMIVVAVVGILTAIAYPSYTEYVQRGHR ADARAGLLQAQQWLERAATATGVYPTTLPAALTWSGDTTKRYDIAFQAGNTNAAYTLT AVPKGAQTGDKCGTYTLSNTGVRGAAGKKSGESGYNPDCWSK" misc_feature complement(1245760..1246173) /locus_tag="Alide2_1195" /note="Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilE; COG4968" /db_xref="CDD:34575" misc_feature complement(1246090..1246161) /locus_tag="Alide2_1195" /note="Prokaryotic N-terminal methylation motif; Region: N_methyl; cl06830" /db_xref="CDD:141948" gene complement(1246196..1249933) /locus_tag="Alide2_1196" /db_xref="GeneID:10482224" CDS complement(1246196..1249933) /locus_tag="Alide2_1196" /inference="protein motif:PFAM:PF05567" /note="PFAM: PilC domain; KEGG: dac:Daci_5197 FG-GAP repeat-containing protein" /codon_start=1 /transl_table=11 /product="PilC domain-containing protein" /protein_id="YP_004387116.1" /db_xref="GI:330823813" /db_xref="InterPro:IPR008707" /db_xref="GeneID:10482224" /translation="MPRKTPPRFRKTLLALAASTMLAPHGAWAIDLVQAPPGTVQPYV TPNVIISIDDSGSMDYRVDRESSSGATNNTTPNADGTWPGTSRRMNVLKYALQSIFDP THEKYDSSLLPDKKIRLAWQAMNANNGNPGSLPGSTGSTPTLATNSMQVLAGAHRANF LTFVSKLKPSSSTPSHKMFKQADEYMRANLDKNGPWASVPGTAATPYLGCRRNYHIFM TDGRWNGSVSGGTQDDNTNNITLPDGTVYGSTTLANRPKNGLYADTYSNTLADWAFKS WSTKLQTATDSNGVTGLKGTPQPTAEYNKAPATENFGKDTTGNDAILDRFWNPRYNPA NWPHMVTYTIGLSKMAYTWPGNKVSGSKDPAAPDTACTVIQAPGQGCATGNKATFDTD LMVPFSYDPGSNGSLPDFITGNIKWPDIGSGGEPVRSLDLWHAALNGRGRFYAVEKGE DLAKAFRDIFQQINTQVDPDLTSTATSGSNISRNDVGKFTGNYEPKNAWKGFVTAETV KKDGTTEPTTSWGGKNTADKLDAMDTSTRLILSWSDQWVTSKNKGGVAFKWASDQSNL STDQKALLGKDPSDTTVTVATNGENRLNFIRGDRSLEGSETSGYSTSKPFRERKSRQG DIVNSVVWYTGAPASNYPLKGYGAFTLARKSRTPMIYVGGNDGLLHGFSATDGTEKIA YAPRGVIASLPLLTDPAYNNKHRFFVDGSPMTGDVDLGSPDPANPSSTVPDWRTLLVG TMGAGGKGYFVLDVTNPAPGDDGSVPGFNEGSAQKLVVLDRTRGAEGAPNCAAMSGTQ KTACETAVEEDKDIGNITARPVLDENNPMRTTQITRMNNDRWAVVMGNGYNSANQRPV LLIQYLDGNKELKRISAATADAVGTDKANDNGLAAPRLVDLNGDGRADVAYAGDNLGN LWKFDLTNVNDSNWSVAFGGQPLFTAKGPASLGSARTKLQPITTAPTVRANDRTMVVG TGTSAKAVSVGGMMVAFGTGRNVTKVDENDATVQTLYSVLDNTRYRLVDTAKGKRLEV HPGGGTCPTGPNCVPAPAALGEGVVNAKLAAQKITAVGAAGYATVDVTDELKKETWVN FNGWYMDLPAVGERLLKPMEFYDGSNILAVYSQVPAKGSDVDPNVESCESSTVDEERQ YLTLVNIMDGKRPTVQLLDYDGNGMFYSPPGSGSSSGTCHTCGDDKRVSRSQVTKGSH TIIKKGGSGDCQNLDIDAKNNKVAMACMPEQSLRPSWRQVK" sig_peptide complement(1249844..1249933) /locus_tag="Alide2_1196" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.731) with cleavage site probability 0.718 at residue 30" misc_feature complement(1246418..1249561) /locus_tag="Alide2_1196" /note="Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilY1; COG3419" /db_xref="CDD:33225" gene complement(1250025..1250774) /locus_tag="Alide2_1197" /db_xref="GeneID:10482225" CDS complement(1250025..1250774) /locus_tag="Alide2_1197" /inference="similar to AA sequence:KEGG:Daci_5196" /note="KEGG: dac:Daci_5196 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387117.1" /db_xref="GI:330823814" /db_xref="GeneID:10482225" /translation="MQRTPPVHLRRQQQRGIALFVVIVFVMLSMLLALWASRTSLFNE MVVGNDADYQRAFEAAQALLQDAELDIRGENANGSVCTGSGNVCRTSTPDKIPLEAKD VGPLLATLDLETTKCRNGLCAKRTAKQDFWNNTDTSKGPTLAQMATSGVGARYGQYTG AANTTTDGPINPILADTSADTQGGWYWIEVLPYDESSKSSGLIVGGPNNLLPLNLTPS VVYRITALAYGRKLNTMVVLQQTYAQQKLKD" misc_feature complement(1250046..1250753) /locus_tag="Alide2_1197" /note="Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilX; COG4726" /db_xref="CDD:34342" gene complement(1250786..1251661) /locus_tag="Alide2_1198" /db_xref="GeneID:10482226" CDS complement(1250786..1251661) /locus_tag="Alide2_1198" /inference="similar to AA sequence:KEGG:Daci_5195" /note="KEGG: dac:Daci_5195 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387118.1" /db_xref="GI:330823815" /db_xref="InterPro:IPR012902" /db_xref="GeneID:10482226" /translation="MLPKTMTGRPHAQRGVTLIELMVGVAIGLLVVAVAMGALMVSRS VSGTVSDASEIQQQAAYAMRVIGLQLRQAGSLYLNPNPTNAASDNVLTAPVAFETTAP ASGSANGFDPGTNTLSGASDPITLTVGYRRYKESVHGSAVEQALARNCTGGPASTSDD QRVESVFQLNGSELRCAGNGASAQPIVQNVANFQVRYLLQDNTEPGNTKIQYATADAV GAANWGRVQAVEVCLVLYGVEPIDMPSGSTYTDCDGSTKVDMSTLTGERTRRMHIAFR NVFQLRSQGLVGSVL" gene complement(1251664..1252305) /locus_tag="Alide2_1199" /db_xref="GeneID:10482227" CDS complement(1251664..1252305) /locus_tag="Alide2_1199" /inference="protein motif:TFAM:TIGR02523" /note="TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: dac:Daci_5194 type IV pilus modification protein PilV" /codon_start=1 /transl_table=11 /product="type IV pilus modification protein PilV" /protein_id="YP_004387119.1" /db_xref="GI:330823816" /db_xref="InterPro:IPR012902" /db_xref="InterPro:IPR013362" /db_xref="GeneID:10482227" /translation="MRPSIHRPRQSGITLIESLVAIVVAALGILGILGVQMRTLADTQ TTVRRSQAIRLIEDLGERMKVNPNALADLGAYVSAFSATPSAGDCKTKQCSRTELAVY DLGTWKQTVKDSLPLGQASIFLAPGETVAANRRLLGVMISWRENERDTAGDYKNNIDA TKIRAADGSFSDGGGTAATCPADRTCHLQYIPVAARCAPYLGGGPTQYFCPGS" misc_feature complement(1251874..1252278) /locus_tag="Alide2_1199" /note="type IV pilus modification protein PilV; Region: type_IV_pilV; TIGR02523" /db_xref="CDD:131575" gene complement(1252312..1252818) /locus_tag="Alide2_1200" /db_xref="GeneID:10482228" CDS complement(1252312..1252818) /locus_tag="Alide2_1200" /inference="protein motif:PFAM:PF12019" /note="PFAM: General secretion pathway, GspH; KEGG: ajs:Ajs_3182 putative type-4 fimbrial pilin related signal peptide protein" /codon_start=1 /transl_table=11 /product="general secretion pathway, GspH" /protein_id="YP_004387120.1" /db_xref="GI:330823817" /db_xref="GO:0008565" /db_xref="InterPro:IPR022346" /db_xref="GeneID:10482228" /translation="MVTVAILAVLAALAAPSFNPLIERWRVRQTVEGLQSSLYYARSE AIKRGGNVVVQKIPNNTDGCTTAPGTNDWGCGWQVLACASINASGNCVTPTELQRFDA PARMQITRTSGGEAITLNRWGLVNGTWIGMSVVPQNKSISDAAAKGVCVSSGGRIRVI SDPPCTSG" misc_feature complement(1252354..1252731) /locus_tag="Alide2_1200" /note="Type II transport protein GspH; Region: GspH; pfam12019" /db_xref="CDD:192916" gene 1253027..1254001 /locus_tag="Alide2_1201" /db_xref="GeneID:10482229" CDS 1253027..1254001 /locus_tag="Alide2_1201" /inference="protein motif:TFAM:TIGR00380" /note="KEGG: ajs:Ajs_3180 adenosylcobinamide-phosphate synthase; TIGRFAM: Cobalamin biosynthesis CobD/CbiB; PFAM: Cobalamin biosynthesis CobD/CbiB" /codon_start=1 /transl_table=11 /product="cobalamin biosynthesis protein CobD" /protein_id="YP_004387121.1" /db_xref="GI:330823818" /db_xref="InterPro:IPR004485" /db_xref="GeneID:10482229" /translation="MPFPILDAAAAAVALLLALSIDRWWGEPPAALHPVVWMGRALGA CGARVAPAQATGRDLWSFWLAAIAWCALAAIVLVVFGVLQWTAVAHLPAWGAALALGL LLKPLLAWRMLRREVLAVEAALGESLEVGRARLAWLVSRDVRQLDEAQVRESAIESLA ENLSDSVVAPLFWFVLLGLPGAALYRFANTADAMWGYPDMRGGRYWQWAGKWAARADD ALSWLPARLTALLLWLAARGGVRWGALRALARATPSPNGGWPMGAMALALGVRLSKPG VYVLNAAGRAARAEDTRRAVDLASRSIAALIPLLLAALLLIAIVRRHV" misc_feature 1253087..1253932 /locus_tag="Alide2_1201" /note="CobD/Cbib protein; Region: CobD_Cbib; cl00561" /db_xref="CDD:193870" gene 1253994..1254980 /locus_tag="Alide2_1202" /db_xref="GeneID:10482230" CDS 1253994..1254980 /locus_tag="Alide2_1202" /inference="similar to AA sequence:KEGG:Dtpsy_2532" /note="KEGG: dia:Dtpsy_2532 aminotransferase class I and II" /codon_start=1 /transl_table=11 /product="class I and II aminotransferase" /protein_id="YP_004387122.1" /db_xref="GI:330823819" /db_xref="GeneID:10482230" /translation="MSDPALLHGGPDALGAAPYDFSTNANACGPCPAALDALRQADRS RYPDPAYTALHARLAAFHGVPAPRIVLAASASEFIHRITAFAARGGLRHAVLPAHGYG DYARAAAAWGLARADAAGQPALHWACEPASPLGTADEALARWALQPARQGDVRVIDRA YAPLRLEGAAAAPPVDAWQLWSPNKALGLTGVRAAYAIAPGEAQAAAVQALAPSWPLG ADGVALLQAWTGDAAQAWLAASLATLRAWKAAQVALCASLGWAVLPGSLANFFTARPP AGDLPGALQALRAQGIKLRDCASFGLSGHVRLGVLAPPAQQALAAAWRQCVA" misc_feature 1253994..1254923 /locus_tag="Alide2_1202" /note="Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]; Region: HisC; COG0079" /db_xref="CDD:30428" misc_feature 1254051..1254923 /locus_tag="Alide2_1202" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" gene 1254977..1256449 /locus_tag="Alide2_1203" /db_xref="GeneID:10482231" CDS 1254977..1256449 /locus_tag="Alide2_1203" /inference="protein motif:HAMAP:MF_00028" /note="TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: ajs:Ajs_3178 adenosylcobyric acid synthase (glutamine-hydrolysing); PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="Cobyric acid synthase" /protein_id="YP_004387123.1" /db_xref="GI:330823820" /db_xref="InterPro:IPR002586" /db_xref="InterPro:IPR004459" /db_xref="InterPro:IPR011698" /db_xref="GeneID:10482231" /translation="MKTKTLPGPARCVMVLGTTSGAGKSWLATALCRHYSNQGLKVAP FKAQNMSNNARVVAGPGGAWGEIGSAQYFQALAARAEPDVRMNPLLLKPEADTKSQVV LLGQVSDALSQLPWRGRSARVWPQITAALDALRAENDVVVIEGAGSPAEINLHASDVV NMRVARHAHARCLLVTDIDRGGAFAHLYGTWALLPGDERALIAGFVLNKFRGDASLLA PAPEMLREKTGVPVVATIPMQWNHGLPEEDGVFDMAATAGGSVHTRIAVVAYPRISNL DEFQPLKNVPGVRLSWARSPADVDGADWIVLPGSKATAADLAWLRAQGLDAAVAVHAA RGARVLGICGGLQMLGEALIDTVGVDGNGPGLGLLPLVTSFEAEKTVRPAHTRFGAVQ GAWQALGGVPVQGYEIHHGQTAQHPAMAAKGDVAREVIPGLAWQNGAGNVLGLYLHGL FEDGGVLRALFGAGAPTLEQVFDRMAEGVGRWFDPRVLEI" misc_feature 1255001..1256356 /locus_tag="Alide2_1203" /note="cobyric acid synthase; Provisional; Region: PRK00784" /db_xref="CDD:179125" misc_feature 1255019..1255687 /locus_tag="Alide2_1203" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature 1255769..1256359 /locus_tag="Alide2_1203" /note="Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ); Region: GATase1_CobQ; cd01750" /db_xref="CDD:153221" misc_feature order(1256003..1256005,1256201..1256203,1256207..1256209) /locus_tag="Alide2_1203" /note="catalytic triad [active]" /db_xref="CDD:153221" gene 1256508..1257566 /locus_tag="Alide2_1204" /db_xref="GeneID:10482232" CDS 1256508..1257566 /locus_tag="Alide2_1204" /EC_number="2.4.2.21" /inference="protein motif:TFAM:TIGR03160" /note="TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase" /protein_id="YP_004387124.1" /db_xref="GI:330823821" /db_xref="GO:0008939" /db_xref="InterPro:IPR003200" /db_xref="InterPro:IPR017846" /db_xref="GeneID:10482232" /translation="MQLIPDIPSIDDSALAARLQSRIDGKTKPLGALGRLEALALRLG LILGTEMPELRAPQMLVCAADHGLAARGVSAYPSDVTWQMVENFLAGGAAVSVLARQH GLVLTVADCGVAREVPARAAAPGAPRLVHCRVAAGTQDASGGPAMSAAQCAQALQNGR DIVRGLPGNVLLLGEMGIGNTSVASLLLARLAGVPLAECTGAGTGLDAAGIARKQAVL EQALAANAGATGPLDALAALGGFEVATLAGAVLQAASERRVIVVDGFITSAAVLVAAR LAPAVLERCVFSHRSGERGHARMLEELRAEPLLDLGLRLGEGSGAALAWPLLESACRV LREMASFASAGVAGPSAS" misc_feature 1256514..1257545 /locus_tag="Alide2_1204" /note="Phosphoribosyltransferase; Region: DBI_PRT; pfam02277" /db_xref="CDD:190270" misc_feature 1256652..1257539 /locus_tag="Alide2_1204" /note="Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT), also called CobT; Region: DMB-PRT_CobT; cd02439" /db_xref="CDD:143332" misc_feature order(1256727..1256729,1256745..1256747,1256757..1256759, 1257030..1257050,1257297..1257305,1257378..1257380, 1257450..1257458,1257525..1257527) /locus_tag="Alide2_1204" /note="active site pocket [active]" /db_xref="CDD:143332" misc_feature order(1256730..1256732,1256745..1256747,1256754..1256759, 1256781..1256789,1256796..1256801,1256805..1256807, 1257381..1257383,1257423..1257425,1257429..1257446, 1257450..1257452,1257474..1257476,1257483..1257485, 1257495..1257497,1257504..1257509,1257519..1257524, 1257537..1257539) /locus_tag="Alide2_1204" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143332" misc_feature 1257456..1257458 /locus_tag="Alide2_1204" /note="putative cataytic base [active]" /db_xref="CDD:143332" gene 1257656..1258159 /locus_tag="Alide2_1205" /db_xref="GeneID:10482233" CDS 1257656..1258159 /locus_tag="Alide2_1205" /inference="protein motif:PFAM:PF01661" /note="PFAM: Appr-1-p processing; KEGG: pag:PLES_35831 hypothetical protein" /codon_start=1 /transl_table=11 /product="Appr-1-p processing domain-containing protein" /protein_id="YP_004387125.1" /db_xref="GI:330823822" /db_xref="InterPro:IPR002589" /db_xref="GeneID:10482233" /translation="MIKEVTGDILLSKADLLAHGISANDPFDSGLALALRERWPSLVK DYRHDTRSKAIGTGEVWAWAGVQEGGGVRRIVNLVTQNTLGQGPAAKPGKASVENVRA ALQNLAKVIRQEGIKSVALPRLATGVGGLEWDDVRPLITQYLGELGIPVIVYSTYRKD VQADEGL" misc_feature 1257656..1258096 /locus_tag="Alide2_1205" /note="Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose...; Region: Macro_Poa1p_like; cd02901" /db_xref="CDD:28842" misc_feature order(1257677..1257682,1257719..1257721,1257740..1257742, 1257746..1257751,1258028..1258030,1258034..1258042) /locus_tag="Alide2_1205" /note="ADP-ribose binding site [chemical binding]; other site" /db_xref="CDD:28842" gene complement(1258177..1258815) /locus_tag="Alide2_1206" /db_xref="GeneID:10482234" CDS complement(1258177..1258815) /locus_tag="Alide2_1206" /EC_number="4.2.99.18" /inference="protein motif:TFAM:TIGR01083" /note="SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Endonuclease III/Nth; KEGG: ajs:Ajs_3170 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD domain; Helix-hairpin-helix motif; Endonuclease III-like, iron-sulphur cluster loop motif" /codon_start=1 /transl_table=11 /product="endonuclease III" /protein_id="YP_004387126.1" /db_xref="GI:330823823" /db_xref="GO:0003906" /db_xref="InterPro:IPR000445" /db_xref="InterPro:IPR003265" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR003651" /db_xref="InterPro:IPR005759" /db_xref="GeneID:10482234" /translation="MKTEDIEPFFAALKAANPQPNTELEYTSVFELLTAVLLSAQATD VGVNKATRRLFLVANTPQAMLDLGLEGLEGYIKTIGLYRSKARHLMQTCHILVERHGG QVPRTREALEALPGVGRKTANVVLNVAFGEATMAVDTHIFRVGNRTGLAPGRNPLEVE KRLLERVPQQYMVDAHHWLILLGRYVCQARKPRCWECVVAPYCGYQPKTPAP" misc_feature complement(1258189..1258815) /locus_tag="Alide2_1206" /note="Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]; Region: Nth; COG0177" /db_xref="CDD:30526" misc_feature complement(1258267..1258728) /locus_tag="Alide2_1206" /note="endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056" /db_xref="CDD:28938" misc_feature complement(order(1258561..1258563,1258678..1258680, 1258687..1258695)) /locus_tag="Alide2_1206" /note="minor groove reading motif; other site" /db_xref="CDD:28938" misc_feature complement(1258453..1258476) /locus_tag="Alide2_1206" /note="helix-hairpin-helix signature motif; other site" /db_xref="CDD:28938" misc_feature complement(order(1258276..1258278,1258288..1258290, 1258444..1258446)) /locus_tag="Alide2_1206" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:28938" misc_feature complement(1258402..1258404) /locus_tag="Alide2_1206" /note="active site" /db_xref="CDD:28938" misc_feature complement(1258207..1258257) /locus_tag="Alide2_1206" /note="Iron-sulfur binding domain of endonuclease III; Region: EndIII_4Fe-2S; pfam10576" /db_xref="CDD:192633" gene complement(1258812..1259765) /locus_tag="Alide2_1207" /db_xref="GeneID:10482235" CDS complement(1258812..1259765) /locus_tag="Alide2_1207" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2826 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387127.1" /db_xref="GI:330823824" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482235" /translation="MISHRLQDTALRYFLEVVRSGSVSEAAARLSVSPSAVSRQVAGL EDLLGLPLFERRPRGMVPSAAGELLAAHARRGALEADRVVSDIQALRGLRRGLIRVCA SGGFVVEFLPRAMALFRAEHPGMQFHLRAAAPAAVTQAVLDGDADIGLTYSRAAERDI EVQHRQVSPVIAIMRPDHPLARHASVTLAQMHPYPIALPDGDNTARQLFDIACSQRRL VFEPALVTGQFEALTHFVLHGGGLSLAGEVTVRERMRRGELHAAQIRERAVNGRAIEL QTLAGRTLPEGVHAFLNHLRALLPAPRAATIPPNPQNDTPP" misc_feature complement(1258884..1259738) /locus_tag="Alide2_1207" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1259565..1259738) /locus_tag="Alide2_1207" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1258884..1259474) /locus_tag="Alide2_1207" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(1259052..1259057,1259061..1259066, 1259082..1259099,1259373..1259393,1259397..1259399, 1259409..1259411,1259418..1259423,1259427..1259432)) /locus_tag="Alide2_1207" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 1259876..1261339 /locus_tag="Alide2_1208" /db_xref="GeneID:10482236" CDS 1259876..1261339 /locus_tag="Alide2_1208" /inference="protein motif:PFAM:PF01425" /note="PFAM: Amidase; KEGG: dac:Daci_2827 amidase" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_004387128.1" /db_xref="GI:330823825" /db_xref="GO:0003906" /db_xref="InterPro:IPR000120" /db_xref="GeneID:10482236" /translation="MPQQPQFPAAAGIAEMSAVALSRAIHAREVSCVEVLDACYAQID RLNPVVNALVAFADRDAMRQLARALDERLARGESLGPLHGFPQAPKDIMPAAGMVTTK GSPLFAGQVSQADCVVFERMRAGGCLFVARSNSPEFGLGGHTYNPVYGTTRNAWDTTR SAGGSSGGAAVAVALSMLPVADGSDMMGSLRTPAAFNNVYGLRTSVGCVPHGPGEEVF FQQFSVAGPMARDIPDLALLLSVQAGFDDRLPLTRRGEGPRDWGAALARDFRGARIGW LGDLKGHLPTEPGVLDTCRAALRHFTDIGCTVDDALPAFDFESLWRAWLDLRSFSVAG ANGALYENPEKRALLKPEALWEIERGRALCAMRVYDAARVRSAWYEALRRLFATYDFL VLPAAQVFPFDAALDWPHAVGGREMDTYHRWMQAVVPATMAGLPALAAPAGFGPQGLP AGLQIIGPAQADLAVLQIGHAYDQASGYARRRSPLLG" misc_feature 1259888..1261333 /locus_tag="Alide2_1208" /note="amidase; Provisional; Region: PRK07486" /db_xref="CDD:168970" misc_feature 1259975..1261273 /locus_tag="Alide2_1208" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene 1261375..1262361 /locus_tag="Alide2_1209" /db_xref="GeneID:10482237" CDS 1261375..1262361 /locus_tag="Alide2_1209" /inference="similar to AA sequence:KEGG:Daci_2828" /note="KEGG: dac:Daci_2828 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387129.1" /db_xref="GI:330823826" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482237" /translation="MTSLTRSRFLSCLVAGAAALAAPAAFAQQNYPDRPIKLIVPFAP GGATDILGRLLAAGLSDKLGQPVVVENRPGAGTVVAGGLVAKAPPDGYTLFLGASSTL TYNPAIRAQLPYDPLHSFTPLAMVADMGLVLVANNATPGKTLQELVALSKAEPDKFSY GSFGTGSSVHFGGEMLKTATGLKAMHVPFNGSSPSLTALMGGQVQLAVDTVVATTPLI KAGKIRAIATLGAQRLPLLPQVPTVAESGYPGFSADTWFPFLAPAGLPAPVRQKVEKA LADVMADPAVRARLVDVGLTPAWGPGSVVTERVERELPQMRAVAARSGIRVD" sig_peptide 1261375..1261458 /locus_tag="Alide2_1209" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 28" misc_feature 1261456..1262352 /locus_tag="Alide2_1209" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1261528..1262274 /locus_tag="Alide2_1209" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1262358..1262828) /locus_tag="Alide2_1210" /db_xref="GeneID:10482238" CDS complement(1262358..1262828) /locus_tag="Alide2_1210" /inference="protein motif:PFAM:PF06445" /note="KEGG: dac:Daci_3099 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding" /codon_start=1 /transl_table=11 /product="transcription activator effector binding protein" /protein_id="YP_004387130.1" /db_xref="GI:330823827" /db_xref="InterPro:IPR010499" /db_xref="GeneID:10482238" /translation="MHVEIRTLPALRLAYLRHTGPYGAPAIAQTWERLGAWCEAQGLM RPRPRFYGISHDDPGATPAAQCRYDACVPVDAAFAPQGDVGVQAFAGGRHACARFTGP ASQMGAAWEWLYGQWLPASGLQADQRPGVEVYEEDFAVDPATGAFSCWICMPVR" misc_feature complement(1262364..1262828) /locus_tag="Alide2_1210" /note="Bacterial transcription activator, effector binding domain; Region: AraC_E_bind; cl01368" /db_xref="CDD:194113" gene 1262981..1264174 /locus_tag="Alide2_1211" /db_xref="GeneID:10482239" CDS 1262981..1264174 /locus_tag="Alide2_1211" /EC_number="2.6.1.57" /inference="protein motif:PRIAM:2.6.1.57" /note="KEGG: aav:Aave_1563 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII" /codon_start=1 /transl_table=11 /product="putative GntR family transcriptional regulator" /protein_id="YP_004387131.1" /db_xref="GI:330823828" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10482239" /translation="MQFADRLNNVETSAIRELFKLLGKPGIISFAGGFPDSAMFDVDG IREASQRALAEEPGGALQYGATEGYEPLREQLSAFMAAKGAKDVAPGQLIVTTGSQQA LDLLGKTMIGPGDKVIVEGPTFLATIQCFRLYGADLVSAPIDGQGVKTDELERLIAEH RPKLVYLIPTFGNPSGAMLSLERRRKVLELAVKYQTLIVEDDPYGDLYFGEAPPPSLL ALSPQVPGSRELLAHCGSLSKVLSPGLRVGWLVAPPELLAKATMCKQFSDAHTSTFAQ ATAAQYLKAGRMPGTLAHVRAVYAERAQAMGDALRRELGAAVEFVQPQGGLFVWARLT GANGAVADGDVLAKRAIDKGVAFVPGAPFFCANPDRATLRLSFATAGVDKIREGVARL GQAVA" misc_feature 1262990..1264168 /locus_tag="Alide2_1211" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature 1263062..1264162 /locus_tag="Alide2_1211" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(1263272..1263280,1263350..1263352,1263497..1263499, 1263590..1263592,1263686..1263688,1263692..1263697, 1263716..1263718) /locus_tag="Alide2_1211" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(1263281..1263283,1263380..1263382,1263569..1263571, 1263710..1263718,1263803..1263805,1263812..1263814) /locus_tag="Alide2_1211" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 1263695..1263697 /locus_tag="Alide2_1211" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 1264176..1264376 /locus_tag="Alide2_1212" /db_xref="GeneID:10482240" CDS 1264176..1264376 /locus_tag="Alide2_1212" /inference="protein motif:PFAM:PF04102" /note="PFAM: SlyX; KEGG: dia:Dtpsy_2515 SlyX family protein" /codon_start=1 /transl_table=11 /product="SlyX family protein" /protein_id="YP_004387132.1" /db_xref="GI:330823829" /db_xref="InterPro:IPR007236" /db_xref="GeneID:10482240" /translation="MKDRLEALEVKAAYAEDMLDQLNLTIYRQQQQIDQLLREVAQLR QQVPEGGGAAVRSLRDELPPHY" misc_feature 1264182..1264373 /locus_tag="Alide2_1212" /note="SlyX; Region: SlyX; cl01090" /db_xref="CDD:186326" gene 1264454..1265455 /locus_tag="Alide2_1213" /db_xref="GeneID:10482241" CDS 1264454..1265455 /locus_tag="Alide2_1213" /inference="protein motif:PFAM:PF00248" /note="PFAM: NADP-dependent oxidoreductase domain; KEGG: ajs:Ajs_3167 aldo/keto reductase" /codon_start=1 /transl_table=11 /product="NADP-dependent oxidoreductase domain-containing protein" /protein_id="YP_004387133.1" /db_xref="GI:330823830" /db_xref="InterPro:IPR023210" /db_xref="GeneID:10482241" /translation="MQYRFLGKSQLQVSALCLGTMMFGDQTDEAEAASIVAHAREHGV NYMDTADVYTKGASEAMLGKLLKGQRHDWVLATKLGNKMSERPNEGRYSRAWMLREVE ASLARLQTDHVDILYLHRDYEDMDLEEPLYAIEALLRAGKIRYWGVSNFRAWRIAELV HGARRIGMPGPTVCQPYYNLLNRMPEVEILPACRHYGLGVTPYSPVARGVLTGKYLPG QAPEAGSRAGRGDRRMGQTEFRQESLAIAQTLMQHAQARGVTLAQFATAWVLAHRSVS SVIAGPRTLAQWQDYLPALDYTVTPEDEALVDGLVAPGHPSTLGYTDPAYPLQARRA" misc_feature 1264454..1265401 /locus_tag="Alide2_1213" /note="Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]; Region: Tas; COG0667" /db_xref="CDD:31011" misc_feature 1264460..1265383 /locus_tag="Alide2_1213" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature order(1264508..1264516,1264595..1264597,1264610..1264612, 1264685..1264687,1264808..1264813,1264898..1264903, 1264976..1264978,1265060..1265077,1265237..1265239, 1265288..1265299,1265312..1265314,1265321..1265326) /locus_tag="Alide2_1213" /note="active site" /db_xref="CDD:119408" misc_feature order(1264595..1264597,1264610..1264612,1264685..1264687, 1264808..1264810) /locus_tag="Alide2_1213" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene 1265458..1265898 /locus_tag="Alide2_1214" /db_xref="GeneID:10482242" CDS 1265458..1265898 /locus_tag="Alide2_1214" /inference="protein motif:PFAM:PF05425" /note="PFAM: Copper resistance D; KEGG: ajs:Ajs_3166 hypothetical protein" /codon_start=1 /transl_table=11 /product="copper resistance D domain-containing protein" /protein_id="YP_004387134.1" /db_xref="GI:330823831" /db_xref="InterPro:IPR008457" /db_xref="GeneID:10482242" /translation="MYPWIFSLHLLAATVWTGGHLVLALTVLPRALRLRNPQVLLDFE QGYEKLGMPALAIQVASGLWMALQLVPDWGRWFSPGTALERAVSVKLALLAGTALVAA HARLRVIPRLNARTLPLMAWHVAAVTLLSVGFVLTGISFRYGGL" gene 1265898..1266122 /locus_tag="Alide2_1215" /db_xref="GeneID:10482243" CDS 1265898..1266122 /locus_tag="Alide2_1215" /inference="similar to AA sequence:KEGG:Dtpsy_2512" /note="KEGG: dia:Dtpsy_2512 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387135.1" /db_xref="GI:330823832" /db_xref="GeneID:10482243" /translation="MEIAGCTAQRLRLLLEREMPFGKHRGTVIADLPANYLHWFAREG FPRGEIGQLLALMYEIDHNGLRELLAPLRA" misc_feature 1265922..1266113 /locus_tag="Alide2_1215" /note="Protein of unknown function (DUF3820); Region: DUF3820; cl01411" /db_xref="CDD:194129" gene complement(1266119..1266490) /locus_tag="Alide2_1216" /db_xref="GeneID:10482244" CDS complement(1266119..1266490) /locus_tag="Alide2_1216" /inference="similar to AA sequence:KEGG:Aave_1570" /note="KEGG: aav:Aave_1570 globin-like protein" /codon_start=1 /transl_table=11 /product="globin-like protein" /protein_id="YP_004387136.1" /db_xref="GI:330823833" /db_xref="GeneID:10482244" /translation="MDTTAKRPLDADSITALVYGFYADVRADAQLGPLFDRAIGAHWD AHLARMVDFWSTVALGARSFKGDVFGKHMAVQGVEPGHFAIWLRLWGQRTDALFEPEV ARELQQAAQGIARNLFRGYFG" misc_feature complement(1266140..1266457) /locus_tag="Alide2_1216" /note="superfamily containing globins and truncated hemoglobins; Region: globin_like; cl00280" /db_xref="CDD:153650" misc_feature complement(order(1266152..1266154,1266233..1266235, 1266242..1266244,1266272..1266277,1266341..1266346, 1266353..1266355,1266386..1266391,1266398..1266400, 1266425..1266427)) /locus_tag="Alide2_1216" /note="heme-binding site [chemical binding]; other site" /db_xref="CDD:29980" gene complement(1266493..1267224) /locus_tag="Alide2_1217" /db_xref="GeneID:10482245" CDS complement(1266493..1267224) /locus_tag="Alide2_1217" /inference="protein motif:TFAM:TIGR03652" /note="KEGG: dia:Dtpsy_2511 hemerythrin HHE cation binding domain protein; TIGRFAM: Iron-sulfur cluster repair di-iron protein; PFAM: Domain of unknown function DUF542, ScdA N-terminal; Haemerythrin/HHE cation-binding motif" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster repair di-iron protein" /protein_id="YP_004387137.1" /db_xref="GI:330823834" /db_xref="InterPro:IPR007500" /db_xref="InterPro:IPR012312" /db_xref="InterPro:IPR019903" /db_xref="GeneID:10482245" /translation="MTTMNAIAAAATSPIDPSQAIGQIAVQLPGATAVFRRLKLDFCC GGQVSLRQAAGDKGLDLQAVVDELSALQRPNTLPDAGTPSELVDHIVARYHDVHRAQL PELIRMARRVEAVHRSNPNTPHGLADALEAMEQELVAHMHKEEAVLFPMLRAGGNSFV SQPIAMMRHEHTDHGEALEQIARLTDDITPPREACNTWRALYAGLAQFSDDLVNHIHL ENNVLFPQFEAAAQGGCGSSGCGCS" misc_feature complement(1266532..1267170) /locus_tag="Alide2_1217" /note="iron-sulfur cluster repair di-iron protein; Provisional; Region: PRK10992" /db_xref="CDD:182886" misc_feature complement(1267009..1267170) /locus_tag="Alide2_1217" /note="Domain of unknown function (DUF1858); Region: DUF1858; cl14817" /db_xref="CDD:196831" misc_feature complement(1266772..1266960) /locus_tag="Alide2_1217" /note="Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the...; Region: Hemerythrin; cl11605" /db_xref="CDD:196268" misc_feature complement(1266550..1266738) /locus_tag="Alide2_1217" /note="Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the...; Region: Hemerythrin; cl11605" /db_xref="CDD:196268" gene 1267310..1267801 /locus_tag="Alide2_1218" /db_xref="GeneID:10482246" CDS 1267310..1267801 /locus_tag="Alide2_1218" /inference="protein motif:TFAM:TIGR00738" /note="KEGG: dia:Dtpsy_2510 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2" /codon_start=1 /transl_table=11 /product="BadM/Rrf2 family transcriptional regulator" /protein_id="YP_004387138.1" /db_xref="GI:330823835" /db_xref="InterPro:IPR000944" /db_xref="GeneID:10482246" /translation="MRLTQWTDYALRVLMYCAASQEREQPVTISEVAEAHGISRSHLT KIVQQLAAQGLLDTTRGRGGGMRLMKPAHEINLGAIVRMTETDFDMVECFNAELNQCR MSSHCRLQSVLSNATRAYLAVLDGLSVADLVAPQPAASQGARASTQAMRWVPGLPQVV RSV" misc_feature 1267310..1267720 /locus_tag="Alide2_1218" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1267310..1267711 /locus_tag="Alide2_1218" /note="Rrf2 family protein; Region: rrf2_super; TIGR00738" /db_xref="CDD:129821" gene 1268102..1270024 /locus_tag="Alide2_1219" /db_xref="GeneID:10482247" CDS 1268102..1270024 /locus_tag="Alide2_1219" /inference="protein motif:PFAM:PF08298" /note="KEGG: ctt:CtCNB1_1949 putative serine protein kinase, PrkA; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA" /codon_start=1 /transl_table=11 /product="putative serine protein kinase, PrkA" /protein_id="YP_004387139.1" /db_xref="GI:330823836" /db_xref="InterPro:IPR010650" /db_xref="InterPro:IPR013153" /db_xref="GeneID:10482247" /translation="MDAISNYAARYVRLREEEMSIDEYLALCQRDPMAYGSAAERMLA AIGEPEMVDTRSDPHLSRLFANKVIRRYPAFAEFYGMEDAIEQVVSFFRHAAQGLEER KQILYLLGPVGGGKSSIAERLKHLMQKVPFYALKGSPVNESPLGLFDVAEDGPVLEEQ FGIPRRYLQHVLSPWAVKRLDEYGGDIRKFRVVKRYPSILKQIAIAKTEPGDENNQDI SSLVGKVDIRKLENFAQDDTDAYSYSGGLCLANQGLLEFVEMFKAPIKVLHPLLTATQ EGNYKGTEGFGAIPFDGLVLAHSNESEWKAFRNNRNNEAFLDRIYIVKVPYCLRVSEE VRIYEKLIRESSLANAVCAPGTLKMMAQFAVLTRLKEPENSSIFSKMQVYDGESLKDT DPRAKSYQEYRDYAGVDEGMSGISTRFAFKILSKVFNYDSTEVAANPVHLMYVLEQQI EREQFPAELETKYTGYIKEYLSPRYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADY WIQDSEYRDTDTGEVFDRNALNAELEKIEKPAGIANPKDFRNEIVNFVLRARANNQGK NPSWTSYEKLRLVIEKKMFSNTEELLPVISFNAKASAEDARKHEDFVTRMVAKGYTSK QVRLLCEWYLRVRKSS" misc_feature 1268102..1270021 /locus_tag="Alide2_1219" /note="PrkA family serine protein kinase; Provisional; Region: PRK15455" /db_xref="CDD:185352" misc_feature 1268156..1269229 /locus_tag="Alide2_1219" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1269233..1269997 /locus_tag="Alide2_1219" /note="PrkA serine protein kinase C-terminal domain; Region: PrkA; pfam06798" /db_xref="CDD:148418" gene 1270069..1271337 /locus_tag="Alide2_1220" /db_xref="GeneID:10482248" CDS 1270069..1271337 /locus_tag="Alide2_1220" /inference="protein motif:HAMAP:MF_01232" /note="KEGG: dac:Daci_2328 hypothetical protein; HAMAP: Uncharacterised protein family UPF0229; PFAM: Uncharacterised protein family UPF0229" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387140.1" /db_xref="GI:330823837" /db_xref="InterPro:IPR006698" /db_xref="GeneID:10482248" /translation="MALHIIDRRLAGKNKSVGNRERFIRRYKQQIAEAVRRAVDKRDI RHIEQAENITIPRKDIREPVFRHGSGGIRDTVHSGNRDHVRGDRIARPLGGGGGSGSQ ASDSGEGEDDFTFTLTKEEFMQIFFEDLALPRMLRTHLGETPQYKTRRAGYSHDGTPH NLAVLRTMRGALGRRIALTKAPHRELQALQQELDGLLAQDDGTSEAVAELQQRIDALR ERMARVAFLDPIDLRFRNRTKLPVPSSQAVMFCVMDVSGSMDQERKDLAKRFFILLYL FLTRHYEKIDIVFIRHHTQAAEVDEDAFFHSTESGGTVVSSALVLLDQIMRARYPAGD WNIYVAQASDGDNFHDDGGNCRSLLADRILPLVRYFAYVQVAQEEQNLWDEYSQLPPL FPYFAMRKVSGPGDIYPVFRDLFKKEGAVA" misc_feature 1270078..1271322 /locus_tag="Alide2_1220" /note="Protein of unknown function (DUF444); Region: DUF444; pfam04285" /db_xref="CDD:113071" misc_feature 1270111..1271334 /locus_tag="Alide2_1220" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:197401" gene 1271334..1272965 /locus_tag="Alide2_1221" /db_xref="GeneID:10482249" CDS 1271334..1272965 /locus_tag="Alide2_1221" /inference="protein motif:PFAM:PF04293" /note="PFAM: Sporulation stage V, protein R; KEGG: dac:Daci_2329 SpoVR family protein" /codon_start=1 /transl_table=11 /product="SpoVR family protein" /protein_id="YP_004387141.1" /db_xref="GI:330823838" /db_xref="InterPro:IPR007390" /db_xref="GeneID:10482249" /translation="MNLSQYPVLQRRAGRQSWKQSVPGERHQRGVPRSPLPAGKRPAH PLPDPSDWTFELIERYHAAIAATAERYGLDTYPNQLEVISAEQMMDAYASVGMPVGYR HWSYGKEFLATERRYRRGHMGLAYEIVINSNPCISYLMEENTTAMQALVIAHAAYGHN SFFKGNYLFGMWTDAGSIIDYLVYARDFVSQCEERYGLDTVEQWIDSCHALANLGVDR YHRPSKKSLARERAEREQREAYAQQQVNVLWRTLPARPGKGDSAVQESERFPKEPEEN ILYFIEKNAPLLEPWQRELVRIVRKIAQYFYPQRQTQVMNEGWATFWHYTLLNTLYDE GWLTDGVMIEWLSSHTNVIYQPPAGHRAYSGINPYALGFAMYRDIRRICQDPTEEDRR WFPDMAGTPWLPALHHAMQNFKDESFVGQFLSPKLMRDMRLFAIHDDASERELLVSAI HDEDGYRQLRQTLSQQYDLGVREPNIQVWNVNLRGDRCLTLRHTQYQGRPLADDALEV LKHVARLWGFGVRLETVSGDGEMPVLLHSVPAPPA" misc_feature 1271454..1272953 /locus_tag="Alide2_1221" /note="SpoVR family protein; Provisional; Region: PRK11767" /db_xref="CDD:183304" misc_feature 1271472..1272923 /locus_tag="Alide2_1221" /note="Uncharacterized conserved protein [Function unknown]; Region: SpoVR; COG2719" /db_xref="CDD:32612" gene complement(1273092..1273877) /locus_tag="Alide2_1222" /db_xref="GeneID:10482250" CDS complement(1273092..1273877) /locus_tag="Alide2_1222" /inference="protein motif:TFAM:TIGR00363" /note="KEGG: dia:Dtpsy_2507 lipoprotein, YaeC family; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein, YaeC family" /protein_id="YP_004387142.1" /db_xref="GI:330823839" /db_xref="InterPro:IPR004478" /db_xref="InterPro:IPR004872" /db_xref="GeneID:10482250" /translation="MLKQTLSALAIAALAFSAQAADVLKVAATAVPHAEILNFVKPRL KAEGVDLQVKEFSDYVQPNMAVEDKQLDANFFQHQPYLDSFNKDRKTSLVMVPGGKVH VEPFGAYSSKIKNVKDLKDGATVAIPNDPSNGGRALILLAKQGLIELKDPKSLTPTPL DVVKNPKKLKFKELEAPLLPRALADVDLALINTNYAIEAKLNPTKDALFIEGADSPYT NIVAARADRANDPNIAKLMKALHQPEVKKFIQDKYKGAVVPAF" sig_peptide complement(1273815..1273877) /locus_tag="Alide2_1222" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 21" misc_feature complement(1273095..1273808) /locus_tag="Alide2_1222" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1274014..1275078) /locus_tag="Alide2_1223" /db_xref="GeneID:10482251" CDS complement(1274014..1275078) /locus_tag="Alide2_1223" /inference="protein motif:PFAM:PF06580" /note="KEGG: ajs:Ajs_3313 histidine kinase internal region; PFAM: Signal transduction histidine kinase, internal region; SMART: ATPase-like, ATP-binding domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_004387143.1" /db_xref="GI:330823840" /db_xref="GO:0000155" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR010559" /db_xref="GeneID:10482251" /translation="MQETQILSTHPAPLPGPAPRGRAVGRALVFDACQVGVVLRAVLF VEAVLGVGAMFGAAGPGEWLARLALLTGGALPATLAWLVTACSLKKGLQRLREPLQYA AGVLLGMLAGLYACAMLALAGTTADSPPWLACAASGALLSALLVTALLLRARARTPAA TTARLTELQSRIRPHFLFNTLNSAIALVREEPAKAEALLEDLSDLFRHALVEQGESAT LEDEIALARRYLDIEQVRFGERLRVQWLIDPRASAARLPPLLLQPLVENAVKHGVEPT PGPAKLRITAERRGSRVVLTITNTLPPGNTGAEPRARGHGIALANVRDRLRLLHDVDC DFHAGVRDGLYQVRIALPVK" misc_feature complement(1274344..1274574) /locus_tag="Alide2_1223" /note="Histidine kinase; Region: His_kinase; pfam06580" /db_xref="CDD:191560" misc_feature complement(1274017..1274286) /locus_tag="Alide2_1223" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene 1275129..1276589 /locus_tag="Alide2_1224" /db_xref="GeneID:10482252" CDS 1275129..1276589 /locus_tag="Alide2_1224" /EC_number="4.3.2.1" /inference="protein motif:TFAM:TIGR00838" /note="TIGRFAM: Argininosuccinate lyase; KEGG: dia:Dtpsy_2664 argininosuccinate lyase; PFAM: Lyase 1, N-terminal" /codon_start=1 /transl_table=11 /product="argininosuccinate lyase" /protein_id="YP_004387144.1" /db_xref="GI:330823841" /db_xref="GO:0004056" /db_xref="InterPro:IPR009049" /db_xref="InterPro:IPR022761" /db_xref="GeneID:10482252" /translation="MPHTPASQPSNDQLATKAQAWSALFSEPMSDLVKRYTSSVFFDK RLWQADIAGSLAHADMLAAQGIISGDDLAAIERGMAQITQEIEAGQFDWKLDLEDVHL NIEARLTQLVGDAGKRLHTGRSRNDQVATDVRLWLRGEIDLIDGLLRELQLALVEVAE KNVEVILPGFTHLQVAQPVSFAHHLLAYVEMFARDAERMRDARRRVNVLPLGSAALAG TTYPLDRERVARTLGMEGVCQNSLDGVSDRDFAIEFTAAASLCMVHVSRLSEELIIWM SQNFGFIRIADRFTTGSSIMPQKKNPDVPELARGKTGRVVGHLMGLITLMKGQPLAYN KDNQEDKEPLFDTVDTLKDTLRIFAEMIGGQANPATGAKEGGITVNAEAMRAAAQKGY ATATDLADYLVKKGLPFRDAHETVAHAVKAATTHGVDLSELPLAVLQGFHPAIGKDVF DALSLQGSLCARGTLGGTAPAQVRAQLARHRARLAA" misc_feature 1275174..1276538 /locus_tag="Alide2_1224" /note="argininosuccinate lyase; Provisional; Region: PRK00855" /db_xref="CDD:179143" misc_feature 1275243..1276538 /locus_tag="Alide2_1224" /note="Argininosuccinate lyase (argininosuccinase, ASAL); Region: Argininosuccinate_lyase; cd01359" /db_xref="CDD:176463" misc_feature order(1275243..1275245,1275255..1275257,1275423..1275425, 1275429..1275431,1275498..1275506,1275513..1275515, 1275639..1275644,1275870..1275872,1275999..1276001, 1276005..1276007,1276029..1276031,1276035..1276037, 1276044..1276046,1276125..1276127,1276131..1276133, 1276140..1276142,1276146..1276151) /locus_tag="Alide2_1224" /note="active sites [active]" /db_xref="CDD:176463" misc_feature order(1275468..1275470,1275477..1275479,1275486..1275491, 1275636..1275659,1275675..1275677,1275687..1275692, 1275708..1275710,1275717..1275722,1275729..1275731, 1275741..1275743,1275774..1275788,1275792..1275794, 1275801..1275803,1275843..1275857,1275864..1275869, 1275873..1275875,1275885..1275887,1275894..1275896, 1275906..1275908,1275915..1275920,1275924..1275929, 1275936..1275941,1275954..1275959,1275966..1275968, 1275990..1275992,1276008..1276019,1276023..1276031, 1276035..1276037,1276044..1276049,1276053..1276070, 1276074..1276082,1276089..1276091,1276095..1276103, 1276125..1276136,1276143..1276145,1276152..1276154, 1276185..1276187,1276194..1276196,1276311..1276313, 1276326..1276328,1276338..1276340,1276353..1276358, 1276365..1276367,1276374..1276376,1276512..1276514, 1276518..1276532) /locus_tag="Alide2_1224" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176463" gene 1276607..1277581 /locus_tag="Alide2_1225" /db_xref="GeneID:10482253" CDS 1276607..1277581 /locus_tag="Alide2_1225" /inference="similar to AA sequence:KEGG:Ajs_3311" /note="KEGG: ajs:Ajs_3311 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387145.1" /db_xref="GI:330823842" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10482253" /translation="MTLSRRHLLASALAAGALPLLPARADAPKTLRVLVGFPPGGGSD AIARLLADKLKDTLGVPVVVENRPGAGGQIAAQALKGAPADGSTLFLTHDHTISILPQ VVKNPGFDPARDFVAAGGFATFVNCLAVSPGTPAASFAEYVDWVRRQQGGKSAVGIPA PASTPEFLVRLLGQRYQLDLVAAPYRGSAPMIGDMLGNQIAAGIGSVQDFIENHRAGK LRVLAVLGGRRQAALPQVPTFAELGLPGFEDTPYYGFYAPAGTPEAVLARFAEALSRV VAQSQVREQLTAMGLTVGFMTPAQLAARERAYTAAWQRIIQDSGFKPQ" sig_peptide 1276607..1276684 /locus_tag="Alide2_1225" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 26" misc_feature 1276691..1277569 /locus_tag="Alide2_1225" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1276742..1277566 /locus_tag="Alide2_1225" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1277713..1283649 /locus_tag="Alide2_1226" /db_xref="GeneID:10482254" CDS 1277713..1283649 /locus_tag="Alide2_1226" /inference="protein motif:PFAM:PF01835" /note="PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; Alpha-2-macroglobulin; KEGG: dia:Dtpsy_2661 alpha-2-macroglobulin domain protein" /codon_start=1 /transl_table=11 /product="alpha-2-macroglobulin domain-containing protein" /protein_id="YP_004387146.1" /db_xref="GI:330823843" /db_xref="GO:0004866" /db_xref="InterPro:IPR001599" /db_xref="InterPro:IPR002890" /db_xref="InterPro:IPR011625" /db_xref="GeneID:10482254" /translation="MRRAAAALLLLAAGAAQALVVTSLSPQGEVARVRQVVAKFDAPA VRLGDPQAPAPLTVACSDADAAKGQARWTGEREWVYDFAQDLPPGVRCTVSVKPGFKS ASGAQLAGAVSYQFNTGGPFVQSVRPGTWQEIDEEQFFVLQLNGPATQASLLEHTWCV ADGVGERVPVRLVEGAQRAALLQSLHLDKAAAKEPLRYATLTCGRRLSAGSQMQLVYG RGVATPSGVANAQERRFAYKVRQPFSAEFGCERENARSDCLPVRPMHLAFNAPVARKL AQGIRLKGGGQTLAPEIDGSQEGDALVNGVRFAAPLAAQTQFTLELPSGFKDASGRPL ANAQSFPLKVATGAMPPLAKFAAAPFGVVERFAEGPDGPALLPVTLRRVEAGLDVQGL QPGAAVQGGKVSTLRPDSDADIIAWLRKVQRYDEATVDRAQARRDARGPLPAAFDERD GDRVQTRMLSLLQGQAGVKKLDLPRPAKDDPRPFEVVGIPLPPGFSVVEIASPLLGQS LLDERHGASRTMYVRTSVLVTNLGVHFKLGRENAVAWVTTLDKGRPVAGAQVRVSACD GRLLSTVTTGGDGVARFEGLDSDPPACGGGDEWRNAYFVSARAQDELAFTWSDWQRGI EPWRFNVPVSSEPRPDEVAHTIFDRTLLRAGETLSMKHLLRTQTGRGLGLPDARPAEL AITHVGSGQQFTQPLKWRKTATGGLSAESEFAVPPAARLGMYQVELRGGEGGDGARSF LSGSFRVEEFRLPVLEGRIAPVDGKPLVRARSVPTDVQVGYVSGGGAARLPVRVSAMV RAKSLQFSDFDAFSFQPPRKRDARGSSDDEEESASQDTRVIADKLPLTLDKDGAGRIA IDDVPQAPRAQELVLEASYSDPNGEVQTLRGTHTLWPAAVVAGIKAEGWVSSGSRVRL QALALSLDGKPQEGVPLAVQAIARTTTTSRKRMVGGFYSYDNKTETKDLGTVCTGKSD GRGLLLCDARLDEPGEVELVVSARDKNGNEAQAASSVWVTRRGELWFGGEDHDRIDLL PEKKSYQPGETARLQVRMPFRQATALVSVEREGVISTRVVQLSGQDPTVQIKIEDGWA PNVYVSVLALRGRLREVPWYSFFTWGFKAPREWWNAFWYEGREYVAPTAMVDLSRPAY RLGLAELRVGEQAHRIAVQVKADKDSYPVRGKAQVTIQATLPDGKPAAGAEVALAAVD QALLELMPNTSWNLLDAMLQRRAWGVATSTAQMEIVGRRHYGRKAVPAGGGGGRAPTR ELLDTLLLWQPAVRLDAQGQARVTVPLNDALTTFRIVAVADAGTGLFGTGSASIRATQ DLQIISGLPPLVREGDQFRAQVTLRNTTARTMTVEVAPRATLLALDRQTVDIPAGQAR ELAWNVTAPAQPGQTRAQALLWEIEARDTLGGARDALKARQRLIPAVPLGVQQATLVQ VDGSYRVDVAPPAGALPGRGGLKLALQPGLADGLPGVRDWWARYPYACLEQQASKAIG MGDARQWQSIVARLPTYLDADGLAYYFPPQAGSADRGSDTLTAYLLAAAHEAARLSPE FALPPEAREPLERGLIAFVEGRIERSFWSPRKDLDLRKLAAIEALSRYGKAQARWLTS LNIAPNQWPTHAVIDWLNILRRMPDLPQRAQRLQEATQILRARLSYQGSRLAFSTEQD DAWWWLMQGGDVNAARLMLAVMDDPAWQGDMGRLASGFIARQQGGAWRTTTANLWGAL ALAQFGARYEATPVAGTTRAAMGGRQASVDWSKVVRAGTGDEGGAMHQTTWFGAPAAP GGWKNDTMFLPWGAEGGGGQLTVTHQGPGKPWLTLQSVAAVALQAPMNAGYGIRRSVT PIEQADKSLPPGTYSRGDVLRVTLEVTGAADMAWVAITDPVPAGATILGGGLGRDSEI ATQGEKREGWGWPAFEERGFESFRGYYEYLPKGTVKMQYTLRLNNAGEFQLPPSRVEA LYAPEMFGEAPNARVKVVQP" misc_feature 1279288..1283646 /locus_tag="Alide2_1226" /note="Large extracellular alpha-helical protein [General function prediction only]; Region: COG2373" /db_xref="CDD:32520" misc_feature 1279639..1279953 /locus_tag="Alide2_1226" /note="MG2 domain; Region: A2M_N; pfam01835" /db_xref="CDD:190129" misc_feature 1280791..1281267 /locus_tag="Alide2_1226" /note="Alpha-2-macroglobulin family N-terminal region; Region: A2M_N_2; pfam07703" /db_xref="CDD:191819" misc_feature 1281520..1281780 /locus_tag="Alide2_1226" /note="Alpha-2-macroglobulin family; Region: A2M; pfam00207" /db_xref="CDD:143964" gene 1283684..1284766 /locus_tag="Alide2_1227" /db_xref="GeneID:10482255" CDS 1283684..1284766 /locus_tag="Alide2_1227" /inference="protein motif:PFAM:PF00149" /note="PFAM: Metallo-dependent phosphatase; KEGG: dac:Daci_4972 metallophosphoesterase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004387147.1" /db_xref="GI:330823844" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10482255" /translation="MSLIQRLPAGPLDIVGDIHGEIAALEQLLAHLGYGGAGRHPEGR RLVFVGDFCDRGPDSPAVLRLLMPMLASGQALAVLGNHEINLLRGDAKDGSGWYFDSR RASDEAKYAPFARMPMGEAPAILEQLGRLPIALEREDLRVVHAAWCEPQIAAARGLPA GTVRSAYDHYEDVAARQAQASDVVRRMQDERQLWPHSLEDHGHPPPFLPAHSERELGK SMVNPLKVLTAGVERECRTPFYAGGKWRFVQRVAWWSEYADAQAVVVGHYWRRLLEGD AAAHGPQAENLFGHTSPLSWHGLRGNVFCVDYSVGARWVARRNGEEPGRRFKLAALRW PERTLVFDDGVQAPTQGFGTPADAQA" misc_feature 1283711..>1283947 /locus_tag="Alide2_1227" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" misc_feature order(1283732..1283734,1283738..1283740,1283834..1283836, 1283924..1283929) /locus_tag="Alide2_1227" /note="active site" /db_xref="CDD:163614" misc_feature order(1283732..1283734,1283738..1283740,1283834..1283836, 1283924..1283926) /locus_tag="Alide2_1227" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163614" gene complement(1284876..1285757) /locus_tag="Alide2_1228" /db_xref="GeneID:10482256" CDS complement(1284876..1285757) /locus_tag="Alide2_1228" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2067 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387148.1" /db_xref="GI:330823845" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482256" /translation="MKFSFFDTLEAVLRSGSLAGAARLMNVTPSAVSMQMKQLEAHFG RPLFDRAGLTVRPTPLAREIVEVMREPMQRVEALRRRHGAQVDGLMRLGVIETMQSAL LPGVVAWLRAHHPALQVRPVRGRSVELLESVKAGRVDAAILVQPATGASRGLVWYPLL RKELVLLAPPGTSESRIPALFRTHDWIRFDPETNAGRLTARWMRKHVPGARPAMDLQS VQAVVAMVSAGLGVSIVQQPDAHMTQPLPVRILRLGRDAPSVQVALMARQADAGSRKL EVLRDAVASVPDPTAAR" misc_feature complement(1284903..1285757) /locus_tag="Alide2_1228" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1285572..1285736) /locus_tag="Alide2_1228" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1284909..1285493) /locus_tag="Alide2_1228" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(1285074..1285079,1285083..1285088, 1285104..1285121,1285389..1285409,1285413..1285415, 1285425..1285427,1285434..1285439,1285443..1285448)) /locus_tag="Alide2_1228" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 1285890..1286882 /locus_tag="Alide2_1229" /db_xref="GeneID:10482257" CDS 1285890..1286882 /locus_tag="Alide2_1229" /inference="similar to AA sequence:KEGG:Vapar_4821" /note="KEGG: vap:Vapar_4821 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387149.1" /db_xref="GI:330823846" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482257" /translation="MKHPTRRTFNTALAGALAGAAGLPAFAADDAANYPSRPITIVVG FAPGGPTDIVARVVATKLSQAWGQPVVVDNKPGAGSNIGTEQVVRAAPDGYTLLVETI ANATNMSVYKNLKYDTKRDLVPIVQFMAAPSVLVVNPKLPAKNLKELIALAKAEPGKL NYASTGVGGSPHLAGEMLKMRAGIDIVHIPYKGAGPALNDLLAGNVSMGFMTALGLVP YLESGRLRAIAIASPKRSPEMPDVPTMEDAGLPRFWVLSWNGLAAPAKTPKAIVEKLN REVNRILALPDVKKQLQSLGGDPVGGTPEEFASFVNSEIQTWSAVVQSAGFALE" sig_peptide 1285890..1285973 /locus_tag="Alide2_1229" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 28" misc_feature 1285986..1286870 /locus_tag="Alide2_1229" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1286049..1286867 /locus_tag="Alide2_1229" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1286890..1287885 /locus_tag="Alide2_1230" /db_xref="GeneID:10482258" CDS 1286890..1287885 /locus_tag="Alide2_1230" /EC_number="3.5.1.1" /inference="protein motif:PRIAM:3.5.1.1" /note="PFAM: Asparaginase/glutaminase; KEGG: axy:AXYL_04759 L-asparaginase 1; SMART: Asparaginase/glutaminase" /codon_start=1 /transl_table=11 /product="asparaginase" /protein_id="YP_004387150.1" /db_xref="GI:330823847" /db_xref="InterPro:IPR006034" /db_xref="GeneID:10482258" /translation="MPPIEPHRCALITTGGTIVSRIDPATGLAMPVLSGDELLSTLRG HGDPGEVEVHDFCRVASPHIGPREWVGLSALAQSIAAREDVAGIVVTHGTSTLEDTAW FLDLVLRTEKPVVVTGAQRNASAPDFDGPRNLLTALKICRAPAARGLGVLVALNEHVN AAREATKTHTVDVETFQSGEWGYLGSVVNDRVTFHRAPARRLHIPLTASALPPVEIVS MYPGASGALITAAADAGARGIVVQAVASGHVNEAMAGAIGAVLARGVAVAVSTRIPRG GTRAGYGFPGSSQRLAEAGAVLAGDLSPWKARIVLMLALQRGPVPAPELARLFDQ" misc_feature 1286911..1287834 /locus_tag="Alide2_1230" /note="Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the...; Region: Asparaginase; cl00216" /db_xref="CDD:193714" misc_feature order(1286935..1286940,1286971..1286973,1287070..1287075, 1287166..1287174,1287244..1287246,1287388..1287390) /locus_tag="Alide2_1230" /note="active site/substrate binding site [active]" /db_xref="CDD:29532" misc_feature order(1286938..1286940,1286971..1286973,1287073..1287087, 1287094..1287096,1287172..1287174,1287184..1287186, 1287250..1287252,1287265..1287273,1287280..1287285, 1287355..1287360,1287370..1287372,1287376..1287378, 1287388..1287399,1287403..1287405,1287433..1287441, 1287445..1287447,1287466..1287468,1287472..1287480, 1287484..1287489,1287535..1287537,1287541..1287543, 1287547..1287549,1287559..1287561,1287565..1287567, 1287589..1287591,1287595..1287597,1287619..1287627, 1287631..1287633,1287637..1287639,1287700..1287702, 1287724..1287729) /locus_tag="Alide2_1230" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:29532" gene 1287925..1289082 /locus_tag="Alide2_1231" /db_xref="GeneID:10482259" CDS 1287925..1289082 /locus_tag="Alide2_1231" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387151.1" /db_xref="GI:330823848" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482259" /translation="MDFELSEEQQAFADSVARFAREKLAAGALRRAHSHEWDYEAGQL IAEQGLLGIAFAQADGGQGGTLMHAVLAIEQVALACPRSADIVQVGNFGPIRTFVEYA TPEQKARFLPGLLSGQKLICLGMSEPEAGSAVTELKTTARQEGDEYVINGSKVFSSHG LEADLFLIYVRFGPGVGGIGSVLLERGMPGFSIGQPTRFMNGEQWGQLYFDNVRVPAR NLLLGAGGFKKQISGFNVERLGNASRALACGRYCFNLAREHALQRKQFGRTLAEFQGV QWKFAEMAMKLEQAQLLLYKAAMEGEHGLPSAQSTAMAKLACNLAGWEVSNEAMQVMG GLGFTQDLLVEYCVRRTRGWMIAGGSIEILKNRIAEGVFGRTFSQRPGMAA" misc_feature 1287925..1289049 /locus_tag="Alide2_1231" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1287943..1289046 /locus_tag="Alide2_1231" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1288201..1288203,1288291..1288293,1288297..1288299, 1288390..1288392,1288396..1288398,1288990..1288998, 1289002..1289004,1289008..1289010) /locus_tag="Alide2_1231" /note="active site" /db_xref="CDD:173838" gene 1289082..1291181 /locus_tag="Alide2_1232" /db_xref="GeneID:10482260" CDS 1289082..1291181 /locus_tag="Alide2_1232" /inference="protein motif:PFAM:PF02629" /note="KEGG: dac:Daci_1885 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding" /codon_start=1 /transl_table=11 /product="CoA-binding domain-containing protein" /protein_id="YP_004387152.1" /db_xref="GI:330823849" /db_xref="InterPro:IPR003781" /db_xref="GeneID:10482260" /translation="MAAGRASGAELARVLLRPRSVALVGVSDDAAKPAARPLRYLRQA GFAGAVYPINPRRGTVQGERAWPSLAVLPEVPEHVFVMTATEHVLDTLRECERLGVKV ATVLAGGFSEAGPEGVAREEAVRAFARTSSLRLVGPASLGVAHPGSGLLLTANAAFAE RELPPGKVFVASHSGSMLGALLSRGKARGVGFAGMVSVGVEADLSLGEICSATLDDPE IDSYLLFLESLRRGADLQRFAREAARRGKPVIAYKLGRSQAAAEMATTHTGALAGEDD VADAFLRGLGVARVGVLEALLEAPALARRIPLGATGAARPPRVGIVTTTGGGAAMVVD QLGIRGIVVEPPSPATLARLAAANLPATPGRVLDVTLAGAKYEIMRQLLAILLDAPEF DLVVTVVGSSARFQPELAVKPVIDTACTATRPLAAMLVPDAPQALAELTAHGVPCFRS PEACADAIAAVLQRRSPAVPAAATQPARDEAAFISEADAYGLLEKLDVPHAPVVKMPL AEPPRALPFAFPVVAKVCDERIPHKTEVGGVVLDIRDEDGLHAAFETLRRNLAERAPG IECRDVLVQTMRSGLMEALVGYRVDPDAGPLVMLAAGGVWTEVARDRALRLAPVTVEA AREMIAEVKAFRTLAGLRGRPRGDLDALARAVSALSQLALQPQLGVVEAEVNPLMVMK EGAGVLAVDALVLRRRP" misc_feature 1289109..>1289387 /locus_tag="Alide2_1232" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1289124..1290464 /locus_tag="Alide2_1232" /note="acetyl coenzyme A synthetase (ADP forming), alpha domain; Region: AcCoA-syn-alpha; TIGR02717" /db_xref="CDD:131764" misc_feature 1290603..>1291157 /locus_tag="Alide2_1232" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042" /db_xref="CDD:31244" gene 1291178..1292827 /locus_tag="Alide2_1233" /db_xref="GeneID:10482261" CDS 1291178..1292827 /locus_tag="Alide2_1233" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: gpb:HDN1F_16010 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004387153.1" /db_xref="GI:330823850" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482261" /translation="MMPAIVSPLLARTRALFGGAVTALARECAEGDKLDARKLDAQQF ASYEIAWAAADLLAAETLAGARLNALDAKLAGVFVAEALGAVLRRLEPLLLDLRLDLQ LGELHALAASGELAQFRREAASAAVQAQAGAAVAAGDGELGDVPLDAGIVMARDGFRR FAAEAVAPLAERIHREDQIVPESLLQPLREMGVFGLSIPEAYGGTAPGSHDDTQMMVA VTEALSEGSLGAAGSLITRPEILARALLAGGTEAQKRRWLPALAVGEPLCAIAMTEPD FGSDVAGLQLKATRAEGGWLLNGAKTWCTFAGKAGVLMVVARTDPDKAAGHRGLSLLL VEKPAFEGHEFAVAQEGGGTLHGRAIPTIGYRGMHSFDLVFENFFVPDENLVGGDAGL GKGFYFTMTGMMGGRMQTAGRALGVMRAAVRAAIRYAGDRQVFGAPLVSYQLTQVKIA AMAARFVACRWLAYDVARLLDAGGGRMEASLVKLLACRSAELVTREALQIHGGMGYAE ETAVSRYFVDARVLSIFEGAEETLALKVIARSLLEQALEKR" misc_feature 1291607..1292803 /locus_tag="Alide2_1233" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1291634..1292806 /locus_tag="Alide2_1233" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1291895..1291897,1291985..1291987,1291991..1291993, 1292084..1292086,1292090..1292092,1292747..1292755, 1292759..1292761,1292765..1292767) /locus_tag="Alide2_1233" /note="active site" /db_xref="CDD:173838" gene 1292961..1294208 /locus_tag="Alide2_1234" /db_xref="GeneID:10482262" CDS 1292961..1294208 /locus_tag="Alide2_1234" /inference="similar to AA sequence:KEGG:BB0464" /note="KEGG: bbr:BB0464 putative dehydratase/racemase" /codon_start=1 /transl_table=11 /product="putative dehydratase/racemase" /protein_id="YP_004387154.1" /db_xref="GI:330823851" /db_xref="GeneID:10482262" /translation="MTYPFLDNLRVIESSAFIAAPLAGLTLSQYGAEVIRVDMIGGGI DYGRMPRMPQADGRGRSLYWTALNKGKRSIAIDLRRPQGRELVQALATAPGPRGGVLL TNIGTPWLAHEVLAAKRADVITCTIEGNSDGSTALDYTVNCATGYPAVTGGGSVQHPV NHVLPAWDMACAYQAAFAIVAAVSRRATCGEGAQLRIALSDVAFTALSHLGVMGEAEL LHQDRPSIGNDLYGAFGRDFGTSDGGRIMVAAISINQWDALVQACGIADAIAALEQRL GLEFRDEAQRFEARAEIAALVEPWFTARTRAQAEAELTRHKVCWGRYNTVTELLAADA RASVANPVFERIDTPGIGTHLAAGAVVRAAGLPRQPTSPAPLLGTDTDQVLHEVLGLD SGVIGRLHDAGIVAGPERDPSRV" misc_feature 1292976..1294175 /locus_tag="Alide2_1234" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1294533..1295414 /locus_tag="Alide2_1235" /db_xref="GeneID:10482263" CDS 1294533..1295414 /locus_tag="Alide2_1235" /inference="similar to AA sequence:KEGG:Dtpsy_2653" /note="KEGG: dia:Dtpsy_2653 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387155.1" /db_xref="GI:330823852" /db_xref="GeneID:10482263" /translation="MLMGLAANRLHHQSEDAALFAFLRACEAGIRELRLGLHAVGRTH DAIAAAGMLRGYAPLVRYPYGREGGLMKLVAEVVGMPEPGRTLDGAIYLIDPVDPSSI FPEALALKRQCVIHGKPFLSTVASARDWVEMERIHSGLPPDRHADRFHDYEAQTLALI AHDAMKGAMLDFAARNFDLLSRFGCRVGTGTTGQRLNEMAWSRGWPAGEPWVQRFNSG PLGGDAQIADLVLERRCRRAIFFEDPHVARQHEADIQLLERAVTTATHDAVCTTSPVV AQRWCDAARLRGSRAGR" misc_feature 1294998..1295363 /locus_tag="Alide2_1235" /note="MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate...; Region: MGS-like; cl00245" /db_xref="CDD:185860" misc_feature order(1295010..1295012,1295028..1295030,1295097..1295099, 1295103..1295108,1295250..1295252) /locus_tag="Alide2_1235" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29632" gene 1295414..1297579 /locus_tag="Alide2_1236" /db_xref="GeneID:10482264" CDS 1295414..1297579 /locus_tag="Alide2_1236" /EC_number="2.4.1.129" /inference="protein motif:TFAM:TIGR02073" /note="TIGRFAM: Penicillin-binding protein 1C; KEGG: ajs:Ajs_3299 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 1C" /protein_id="YP_004387156.1" /db_xref="GI:330823853" /db_xref="InterPro:IPR001264" /db_xref="InterPro:IPR001460" /db_xref="InterPro:IPR009647" /db_xref="InterPro:IPR011815" /db_xref="GeneID:10482264" /translation="MRRALIAAWLALAALPALALPTFDEVRADFRPSETLVLSREGEV IQRLRTDATVRRGQWLPLADVSPALRTALVLSEDKRFYEHSGVDWAAVSAAAWANLWN QRTRGASTITMQLAGLLDGDWRQGPGGRTVTQKLGQAVAAQVLDRRWRKDQILEAYLN LVPFRGEIVGIDALARTLFGKAAHGLDEREAAVAAVLVRAPNAAPARVARRACGVLRE MRRQAHCDALDLFTAAALQRRAFDASEGIAPHFARQLLRRVPPGERVRSTVSAPLQRV AVETLTRHLRELRGRNVEDGALVVLDNATGEVLAWVGSSGPLSQAAEVDGVLAARQPG STLKPFLYAQAIGQRRLTAASLLHDSPAQIPTAGGLYIPQNYDRQFKGWVSVRQALAA SLNVPAVRTLVMVTPDAFFAQLRALGLPLAESGGYYGYSLALGSSEVPLLHLTNAYRA LANGGRASPVAFAATPRPAFTQALDAGAAFIVGDILSDANARAPTFGTDSVLATRFWT AVKTGTSKDMRDNWAVGWSRRYTVGVWVGNAGGAAMHDVSGTSGAAPIWADVMGWLHR GTPSRAPRPPEGVARQAVRYGPAPDGGRLESARDEWFLRGTQQALFAIDKIAESDYQE SAEGQKDLKPTARILAPAPGTIVALDPDIPPAHQRLRFEADSAAVLWRIDGKPAGQGA QWAWLPWPGRHCVELLDARGRVLDQIPIEVRGAGVRARE" sig_peptide 1295414..1295473 /locus_tag="Alide2_1236" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.977 at residue 20" misc_feature 1295486..1297525 /locus_tag="Alide2_1236" /note="penicillin-binding protein 1C; Region: PBP_1c; TIGR02073" /db_xref="CDD:162685" misc_feature 1295534..>1295983 /locus_tag="Alide2_1236" /note="Transglycosylase; Region: Transgly; cl07896" /db_xref="CDD:195645" misc_feature 1296299..1297096 /locus_tag="Alide2_1236" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" misc_feature 1297322..1297534 /locus_tag="Alide2_1236" /note="Penicillin-Binding Protein C-terminus Family; Region: BiPBP_C; pfam06832" /db_xref="CDD:148440" gene 1297644..1298165 /locus_tag="Alide2_1237" /db_xref="GeneID:10482265" CDS 1297644..1298165 /locus_tag="Alide2_1237" /inference="similar to AA sequence:KEGG:Daci_3482" /note="KEGG: dac:Daci_3482 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387157.1" /db_xref="GI:330823854" /db_xref="GeneID:10482265" /translation="MRALAALCALWLAAGAARAQEIVTDEKSQAVAKTVLGILGYTRW PSAPQTVRLCVVGPTEYADELLKGGLLPGDRRVQVRRMRLDDSELLSQCDGVYAGMLD DAAWRQLRARLESQPLLSISERQELCLIGCMFCLDVREGGVAFETNLDSVARSGVRVN PRVLQLARRKGGA" sig_peptide 1297644..1297703 /locus_tag="Alide2_1237" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 20" gene 1298186..1299418 /locus_tag="Alide2_1238" /db_xref="GeneID:10482266" CDS 1298186..1299418 /locus_tag="Alide2_1238" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; KEGG: dac:Daci_3483 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; HAMP linker domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004387158.1" /db_xref="GI:330823855" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR003660" /db_xref="GeneID:10482266" /translation="MGRSSSLRGVVRRAHLGMALMAMALAGSLLLLAGLVALRVHLEN NLQLMARSVAYTVEAAVVFKDAEEAGQALARMLAREGVARAVVRDAEGAVFAQWQGAA PGLRARTGQALARLALLAPAVAHIRYEGAPMGTVELRGDGQALLNFVLTGLVALLACT AVSGAVGLLLARRMLRDMVTPLQALAQVARAVRRERATGLRVPPARLAELRELGDDFN ALLGELEDREALLQQKNAELQQRALHDSLTGLPNRASFEQHLQAAIARARGAGQAMAL LFIDCDRFKQVNDTHGHAAGDALLIEVARRLQAQVRAGDVAARLGGDEFAVVMAPPAT QADAQALAGRVAAAMREPLVLESGGVLRPQMSAGVAVFPQQGGDMESLLHSADAAMYE VKARRGRRTTDVYERAQR" sig_peptide 1298186..1298287 /locus_tag="Alide2_1238" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.917) with cleavage site probability 0.701 at residue 34" misc_feature 1298312..1299388 /locus_tag="Alide2_1238" /note="putative inner membrane diguanylate cyclase; Provisional; Region: PRK09966" /db_xref="CDD:182171" misc_feature 1298912..1299385 /locus_tag="Alide2_1238" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1299023..1299025,1299152..1299154) /locus_tag="Alide2_1238" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1299038..1299040,1299047..1299052,1299062..1299064, 1299074..1299076,1299140..1299142,1299146..1299157) /locus_tag="Alide2_1238" /note="active site" /db_xref="CDD:143635" misc_feature order(1299128..1299130,1299215..1299217) /locus_tag="Alide2_1238" /note="I-site; other site" /db_xref="CDD:143635" gene 1299415..1299930 /locus_tag="Alide2_1239" /db_xref="GeneID:10482267" CDS 1299415..1299930 /locus_tag="Alide2_1239" /inference="protein motif:PFAM:PF00691" /note="PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dac:Daci_3484 OmpA/MotB domain-containing protein" /codon_start=1 /transl_table=11 /product="OmpA/MotB domain-containing protein" /protein_id="YP_004387159.1" /db_xref="GI:330823856" /db_xref="InterPro:IPR006665" /db_xref="GeneID:10482267" /translation="MMTMPIPSRFFLRLLWLCFAALALGACQSPPPAAADAQAARRAQ VLREQGFVQTGDGWELQMSGKLLFDFNSDAMTGERREMLVRMGHALVGVGVRALRVEG HADDQGSPDYNERLSLRRAQAVAQVLAEAGIPRERIDIRGYGASRPLVIGTSEAARQE NRRVALIVPVQ" sig_peptide 1299415..1299522 /locus_tag="Alide2_1239" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.572 at residue 36" misc_feature 1299610..1299918 /locus_tag="Alide2_1239" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature order(1299622..1299627,1299724..1299729,1299736..1299738, 1299748..1299753,1299760..1299762,1299886..1299888, 1299898..1299900) /locus_tag="Alide2_1239" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene 1300023..1301195 /locus_tag="Alide2_1240" /db_xref="GeneID:10482268" CDS 1300023..1301195 /locus_tag="Alide2_1240" /EC_number="1.1.2.3" /inference="protein motif:PRIAM:1.1.2.3" /note="KEGG: ajs:Ajs_3298 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent dehydrogenase" /codon_start=1 /transl_table=11 /product="L-lactate dehydrogenase (cytochrome)" /protein_id="YP_004387160.1" /db_xref="GI:330823857" /db_xref="InterPro:IPR000262" /db_xref="GeneID:10482268" /translation="MADLSKITCIEDLRVVAECRVPRMFYDYCDSGSWTEGTYRANEA DFHGIKLRQRVAVNMEGRSTATTMVGQQVKMPVCIAPVGLTGMQHADGEIHAARAAEK FGIPFTLSTMSICSIEDIAENTSAPFWFQLYMMRDREAMARMIGRARDAKCSALVLTL DLQVIGQRHKDIKNGLTAPPRPTLANIVNLMTKPRWCLGMAGTKRRTFRNLVGHVKGV SDMNSLAAWTNEQFDPRLSWEDVRWVKQQWGGKLILKGIMEVEDAVLAVQNGADAIVV SNHGGRQLDGAPSSIRALPAIVDAVGDRIEVWMDGGIRSGQDVLKAWALGARGTMIGR AMVYGLGAFGEAGVTKALQIIHKELDVSMAFCGHTNLQNVDRSILVPGTYPTAPQA" misc_feature 1300041..1301171 /locus_tag="Alide2_1240" /note="L-lactate dehydrogenase; Provisional; Region: lldD; PRK11197" /db_xref="CDD:183033" misc_feature 1300056..1301147 /locus_tag="Alide2_1240" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature order(1300953..1300958,1301019..1301024) /locus_tag="Alide2_1240" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73384" gene 1301368..1302300 /locus_tag="Alide2_1241" /db_xref="GeneID:10482269" CDS 1301368..1302300 /locus_tag="Alide2_1241" /inference="protein motif:PFAM:PF00892" /note="PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2650 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387161.1" /db_xref="GI:330823858" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10482269" /translation="MSLPPDTLAWLWVPVVLFAAFAQTLRNTAQRTLTQELGTLPATL VRFLYGLPFAAAWLALLYWWPAQAPAWPRFTAAYLGWIALGAFFQIAGTAFLLLAMAG RNFAVAVTLTKTEVLQVALFASIFLHELPTPLALLAMAVATLGVLLLSLPPRGQLWSP SAWLSRPALYGLACGGSFAIASVGFRGGALALGAETPWLSGAWGVLIAQALQTLGLGA WVAFTSEKGLAPLWPAWRLSLLAGSMGAAASLAWFTAYAMQGAGPVRTLGMVEVVFSY LVSRRLLSESFTRPEKAGMALMLAGLVLICLQGV" gene complement(1302313..1304151) /locus_tag="Alide2_1242" /db_xref="GeneID:10482270" CDS complement(1302313..1304151) /locus_tag="Alide2_1242" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: bbr:BB0981 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004387162.1" /db_xref="GI:330823859" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="GeneID:10482270" /translation="MTFLPRYSAFAKPRPATSRQSSDKLASDCAGLDFFEIDPGLQQL LPLYVPQAELQYFLPHLKRLGQLAGGRLNELATVADKHGPVLHARSRWGEDEDWVEYH PAYQEMEHIAFEQFQFHAMTHRPGAMGYPGTLSPVTKYAFQYLFVQSEFGQMCPISVT DTSIHLIRKFGSEELKARLLPRMLAEKLEDLWKGTQFMTEKAGGSDVGQVETTARLID GQWHLFGEKWFSSHVDADVALILARPENAPAGTRGLALFAMPRQREDGSRNSYRIVRL KDKLGTRSMASGELRIEGAFAYLVGDPTRGLKQMMEQVNLSRLSHAVRAAAMMRRCLN EALQAASNRHAFGQRVMDYPLMQRQLLKIMVPTEAALSVTLATADMMAKGYAGDKQAA AALRLLTPLLKLRTCRDNITVATGAMEVRGGNGYIEDFVNARLVRDAHIGVLWEGTSN INALDAIGRAVRKDRAHLALQAVLREKLHGVQHSAPDMARQLGHALDQAIALAETVAT RPEFENETRRAASAVYYAAAAVLLAWEATQPGVDGRRLLLADAVLRTHLLAADPMAAP STLTHPREAALLGSARLSLQEAREFLAPAQRTATAPAAAAQPELVG" misc_feature complement(1302766..1304049) /locus_tag="Alide2_1242" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(1302802..1302804,1302808..1302810, 1302814..1302822,1303459..1303461,1303465..1303467, 1303558..1303560,1303564..1303566,1303666..1303668)) /locus_tag="Alide2_1242" /note="active site" /db_xref="CDD:173838" gene complement(1304188..1305414) /locus_tag="Alide2_1243" /db_xref="GeneID:10482271" CDS complement(1304188..1305414) /locus_tag="Alide2_1243" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: bbr:BB0982 hypothetical protein; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387163.1" /db_xref="GI:330823860" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482271" /translation="MSDKPLQKYRVLDMTRVLAGPWCTQNLADLGAEVIKVERPRLGD ETRGWGPPWMPAAADSERRDSAYFGSANRGKKSVTIDFTTAQGQALVKDLVRQCDVLV ENYKAGTLARYGLGYDDLKAIHPGLVYCSVTGFGHTGPYSHKPGYDFVFQAMSGLMSI TGERDDLPGGGPQKVGIAVADITTGMYATVAVLAALLWREGSGQGQHLDMALLDCAMA FNSNQAVNYMASGKLPRRYGNAHSNAVPYQVFDTRDGQIVVAVGNDALFAAYCQAIGR PDLGADARFAKVSGRLQNRDALLPELCRAMAGQASAEWLARLDAAGVPCAPINDFEQA LADPQVRARGIETPITLHDGATFRAIASPLRFSATPLDYPAGPPTLGQHTDAVLRERL GLTPQQQAALRASGVI" misc_feature complement(1304191..1305411) /locus_tag="Alide2_1243" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1305445..1306413) /locus_tag="Alide2_1244" /db_xref="GeneID:10482272" CDS complement(1305445..1306413) /locus_tag="Alide2_1244" /inference="similar to AA sequence:KEGG:BB0983" /note="KEGG: bbr:BB0983 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387164.1" /db_xref="GI:330823861" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482272" /translation="MDIKQMLLGAALTAPLATAAWAQDYPRQPIRLVVPYAAGGMTDV VARIVGQRLGDSLGQPVVVENKPGASTITGADFVAGSRPDGYTLLAATNATLSANPWL YKNLRYDAVKSFNPIALVAMAPSVIVLNPKVPASTLAELVQLAKGKPGSLSYASYGNG SSAHLAGELLRTRAGIDVLHVPYKGSAPAKAATITGEVSMTFEPAFTGAPLIKGGQLK AVAVMGSKRSDALPDVPTVAEVGYPGMEMQAWVGFVAPAGVPQPVLARLAEEIKKIMA APEVQKQLVSSGAEPVGYYLGDFAAYLKDESAKYKAVIEEARIKAE" sig_peptide complement(1306345..1306413) /locus_tag="Alide2_1244" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 23" misc_feature complement(1305463..1306347) /locus_tag="Alide2_1244" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1305457..1306281) /locus_tag="Alide2_1244" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1306552..1307445 /locus_tag="Alide2_1245" /db_xref="GeneID:10482273" CDS 1306552..1307445 /locus_tag="Alide2_1245" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bbr:BB0984 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387165.1" /db_xref="GI:330823862" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482273" /translation="MELRQLRYFVAVAEELHFGKAAQRLAISQPPLSFNIARLEESLG YALLRRSTRAVELTAAGKVFYREACRILSLADQAQALGGRAARGEAGSLRIGFVGAAL LTPMASVLRRFDLERPGLLMTVHELNSFEQIDALQREQIDFGILHPRSIPEGLHAQVL YREPFVCALPASHPLAGRKEIRLRALKDESFVLFPRHFSPEYHDRIIAMCVAAGFTPQ VRYEVRANATVASLVAAGFGVAIVPRSVGRVAIDGLQFRPLAGTRVDSELIGAWRGED HESLIRPLLAEMALQLKEGAS" misc_feature 1306552..1307409 /locus_tag="Alide2_1245" /note="DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906" /db_xref="CDD:182137" misc_feature 1306558..1306737 /locus_tag="Alide2_1245" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1306825..1307415 /locus_tag="Alide2_1245" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like_2; cd08448" /db_xref="CDD:176139" misc_feature order(1306840..1306842,1306861..1306863,1306870..1306875, 1306879..1306884,1306891..1306893,1306915..1306917, 1306921..1306923,1306927..1306929,1307059..1307061, 1307161..1307166,1307221..1307226,1307242..1307247, 1307251..1307256,1307308..1307310) /locus_tag="Alide2_1245" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176139" misc_feature order(1306843..1306845,1306990..1306992,1307131..1307136, 1307155..1307157) /locus_tag="Alide2_1245" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176139" gene 1307521..1308714 /locus_tag="Alide2_1246" /db_xref="GeneID:10482274" CDS 1307521..1308714 /locus_tag="Alide2_1246" /EC_number="2.7.7.7" /inference="protein motif:PRIAM:2.7.7.7" /note="KEGG: aav:Aave_1964 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_004387166.1" /db_xref="GI:330823863" /db_xref="InterPro:IPR001126" /db_xref="GeneID:10482274" /translation="MIAQPRRIAHLDMDAFYASVELLRYPQLTGLPVVIGGGRRQHDD ALAAAYAGRLAEIPPAAFPRLKDYVGRGVITTATYAARQFGVGSAMGLMKAARLCPEA ILLPVDFAEYRRYSRRFKEVILSIAPVMEDRGVDEVYIDFTQVPGGQREGGRVLARLI QKSIHDATGLTCSIGVAPNKLIAKMASEFDKPNGISIVQPGDLQARIWPLACRKINGI GPKTNDRLQAHGIHTIGDLAARPRDWLVAHFGKASGAWLHDAAWGRDERPVVTESEPV SMSRETTFERDLHAVSDKALLGEIFTTLCQQVAQDLAAKGYKGRTIGIKLRYADFQTA TRDQTIDQPTRDAATIRRAAGQCLKRVPLTKRLRLLGVRVGKLQPDDGGAQAGEGETE EPLLL" misc_feature 1307548..1308609 /locus_tag="Alide2_1246" /note="DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa; cd03586" /db_xref="CDD:176459" misc_feature order(1307554..1307559,1307563..1307571,1307743..1307748, 1307755..1307757,1307764..1307766,1307926..1307928, 1308091..1308093) /locus_tag="Alide2_1246" /note="active site" /db_xref="CDD:176459" misc_feature 1307557..1308600 /locus_tag="Alide2_1246" /note="DNA polymerase IV; Validated; Region: PRK02406" /db_xref="CDD:179421" misc_feature order(1307629..1307631,1307791..1307793,1307920..1307922, 1307926..1307931,1308070..1308072,1308166..1308186, 1308271..1308273,1308277..1308279,1308346..1308369, 1308451..1308453,1308520..1308531,1308535..1308537) /locus_tag="Alide2_1246" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176459" gene 1308876..1310438 /locus_tag="Alide2_1247" /db_xref="GeneID:10482275" CDS 1308876..1310438 /locus_tag="Alide2_1247" /inference="protein motif:TFAM:TIGR00229" /note="TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: dia:Dtpsy_2648 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; PAC motif" /codon_start=1 /transl_table=11 /product="Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer" /protein_id="YP_004387167.1" /db_xref="GI:330823864" /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR001610" /db_xref="InterPro:IPR004089" /db_xref="InterPro:IPR013655" /db_xref="GeneID:10482275" /translation="MRINDPVTDNEYDFPAEELLMSTTDKRGLMTHCNAAFARVSGYD IDELLGQPHNLVRHPDMPPEAYKDLWATIGHGRPWSGLVKNRRKNGDCYWVRANVTPI MVDGKPQGYMSVREKPTREEVRAAEALYARIRSEREAGRPTFVLHGGQIRPLGWRNQL GKLQRAGFTLRLAALLVPLLAVALAPALLGWGGMQAAVVQAVLLLAMAGGILWCFHRR ITTAIGDAQRLARDLACCNLHTPSVQVAGRHPLGLLLESLHQIQINLRAVVGDARSEI AQFGSISSEIATGAQNLSARSEAQASNLEETAAAMEELASTVRQSSESARQVLERSAH SAQLAQRGGQAMTEVGDVVQAMEQSSRQMGQIIATIESIAFQTNILALNAAVEAARAG EQGRGFAVVAGEVRALAQRSAQAAGEIRGLIGQSNASITRCVQQMHGAGQTIVQVVES VGHVSQLMEQMEATTREQATGIGQVNDAVVDLDRMTQQNVALVEQSAASARAMSGNAG ILGRTLDVFQMR" misc_feature 1308945..1309217 /locus_tag="Alide2_1247" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature 1308966..1309220 /locus_tag="Alide2_1247" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature order(1308972..1308974,1308984..1308986,1309002..1309004, 1309041..1309052,1309128..1309130,1309143..1309145) /locus_tag="Alide2_1247" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(1309032..1309034,1309044..1309046,1309068..1309070, 1309077..1309082,1309164..1309166,1309170..1309172) /locus_tag="Alide2_1247" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 1309686..1310429 /locus_tag="Alide2_1247" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 1309830..1310432 /locus_tag="Alide2_1247" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(1310468..1311313) /locus_tag="Alide2_1248" /db_xref="GeneID:10482276" CDS complement(1310468..1311313) /locus_tag="Alide2_1248" /EC_number="1.7.1.13" /inference="protein motif:TFAM:TIGR03138" /note="TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, YqcD; KEGG: ajs:Ajs_3294 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase" /codon_start=1 /transl_table=11 /product="7-cyano-7-deazaguanine reductase" /protein_id="YP_004387168.1" /db_xref="GI:330823865" /db_xref="GO:0004871" /db_xref="InterPro:IPR016428" /db_xref="InterPro:IPR020602" /db_xref="GeneID:10482276" /translation="MTTPEQSQLGRASAYADQYDASLLFPLPRAPKRAEIGIAGDPPF FGADLWTAYELSWLNSRGKPQVAIAHITVPCETPNIVESKSLKLYLNSFNSTRFASLD EVRARIRQDLSEAAWRGASITGTVGVRLVTPDLFAQERVHEQDGLLLDRLDIECTRYQ PAPELLKANHDEAPVTETLVSHLLKSNCLVTGQPDWGSVQIAYSGAQIDQEGLLQYIV SFRGHNEFHEQCVERIFMDVWQRCRPIKLAVYARYTRRGGLDINPLRTSHPQPMPANV RTARQ" misc_feature complement(1310471..1311307) /locus_tag="Alide2_1248" /note="7-cyano-7-deazaguanine reductase; Provisional; Region: queF; PRK11792" /db_xref="CDD:183317" misc_feature complement(1310903..1311301) /locus_tag="Alide2_1248" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2904" /db_xref="CDD:32728" misc_feature complement(1310471..1310878) /locus_tag="Alide2_1248" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" gene complement(1311369..1312223) /locus_tag="Alide2_1249" /db_xref="GeneID:10482277" CDS complement(1311369..1312223) /locus_tag="Alide2_1249" /EC_number="1.14.11.2" /inference="protein motif:PRIAM:1.14.11.2" /note="PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit" /codon_start=1 /transl_table=11 /product="Procollagen-proline dioxygenase" /protein_id="YP_004387169.1" /db_xref="GI:330823866" /db_xref="InterPro:IPR005123" /db_xref="InterPro:IPR006620" /db_xref="GeneID:10482277" /translation="MTDRQTITPALRQWIIDQAGTGIAAPALIDAMGQVGWAEDVAVR AVEEVLRAHLGEAARAQGLPPAVPVPEPPLADSPLFIDAGDRRVEVLMAMANPRVVLF GNLLSPEECQAVIEAARTRMARSLTVQAASGGEEVNKDRTSDGMFFQRGENEAVARLE ERIARLVRWPVENGEGLQVLHYRPGAEYKPHYDYFDPAEPGTPRLLRRGGQRVATLVI YLNDPVRGGGTTFPDVPLEIGPRQGNAVFFSYGRAHPSSRTLHGGAPVIEGEKWIATK WLREREFK" misc_feature complement(1311387..1311935) /locus_tag="Alide2_1249" /note="2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy; cl01206" /db_xref="CDD:194067" gene complement(1312220..1312993) /locus_tag="Alide2_1250" /db_xref="GeneID:10482278" CDS complement(1312220..1312993) /locus_tag="Alide2_1250" /inference="protein motif:PFAM:PF03883" /note="PFAM: Uncharacterised protein family UPF0246; KEGG: dia:Dtpsy_2644 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387170.1" /db_xref="GI:330823867" /db_xref="InterPro:IPR005583" /db_xref="GeneID:10482278" /translation="MLFVLSPAKSLDYDTPLPEGLPHTRPAFVPEAGRLIEVLRTQSP QQIASLMSISDPLAALNVARYATWRPRFSAANSRQAVMAFNGDVYEGLQARTLSAEDL AWAQQHLAILSGLYGVLRPLDLMQPYRLEMGTRLATDAGANLYQFWGTRIAGHLNQRL APEPSPVVVNLASQEYFKSVNRKALKARVVECVFEDYKNGAYRIISFHAKRARGLMAR YAIQRRATTPRQLEGFDLEGYAFHPGASAPDRLVFRRTP" misc_feature complement(1312229..1312993) /locus_tag="Alide2_1250" /note="Protein of unknown function (DUF328); Region: DUF328; cl01143" /db_xref="CDD:186354" gene complement(1313152..1316238) /locus_tag="Alide2_1251" /db_xref="GeneID:10482279" CDS complement(1313152..1316238) /locus_tag="Alide2_1251" /inference="protein motif:TFAM:TIGR00757" /note="TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: ajs:Ajs_3290 ribonuclease E; SMART: RNA-binding domain, S1" /codon_start=1 /transl_table=11 /product="Rne/Rng family ribonuclease" /protein_id="YP_004387171.1" /db_xref="GI:330823868" /db_xref="GO:0004540" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR004659" /db_xref="InterPro:IPR019307" /db_xref="InterPro:IPR022967" /db_xref="GeneID:10482279" /translation="MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKA VVTRVEPSLEACFVDYGEDRHGFLPFKEISKQYFSEGVSPSQARINDVIREGQELIVQ VEKEERGNKGAALTTFISLAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYP KGMSIIARTAGIGRSAPELQWDLNYLLKLWNAIDGAAKAGKGAFLIYQESSLVIRAIR DYFNSDIGDILIDTDDIYEQAQQFMQHVMPEHAARVKRYRDDAPLFSRFQIEHQIESA YARTVNLPSGGAIVIDHTEALVSVDVNSARAIKGGDIEETATRTNLEAADEVARQMRL RDLGGLIVIDFIDMEESKNRREVENRLRDALRQDRARVQFGAISKFGLMEMSRQRLKP SLSEGAHIRCPLCDGTGHVRDTEGFSLQMLRMIQEESMKDNTAAVHCQVPVEVASFLL NEKRTEIAKIELKQRVNVVLIPNKTLETPHYKLDRLKHDDPRLENLDASYKLADVVEE QTRVTRRSQEPTNKQTPVIKGVLPDAPAPVAEPRPEGAQRGAARGQGQQQQAAAAPAP AQPRPAPAPAPEQGFFAWLKSLFGFGPAPSPAPVATPAPQPAEPAARGEARRGGERGN RRGGERSGSRDANREGAGAEGRGRRGERQAEGRDTREPRNGRDGERRSERTESEGRRE GRGGRDRGERGTQQPAQAAADLAVNAEATATQERGERAPRNGERGERAERRERGERGE RSRERGPRTIDADAPAATATATATATATATAAAAADFADTAPLTSLPDLDLTANETAS ATPEAANGGEERRERRSRDRYGRDRRERGERGARAAEAASAAPLMEFDLPAAQAEAPA DAEPAPEPARRSYFAAPAAQPAAAPAAEPIAAPVAAEPAAAAPVAPPAPEQAVTVAGI APASAEPEAVAVSAPSAQAEEPAPTGGMPRVQAFTLPVDSLIQVAQASGLEWVNSDAG KIAAAQAAIAAEPKPVRVPRERPPAPVLDEGPLVLVETRRDLRDMQLPFEKEGTAA" misc_feature complement(<1314619..1316238) /locus_tag="Alide2_1251" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:182751" misc_feature complement(1315867..1316145) /locus_tag="Alide2_1251" /note="S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453" /db_xref="CDD:88419" misc_feature complement(order(1315945..1315947,1315957..1315959, 1316110..1316112)) /locus_tag="Alide2_1251" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:88419" misc_feature complement(order(1315873..1315875,1315903..1315908, 1315915..1315917,1315924..1315926,1316038..1316040)) /locus_tag="Alide2_1251" /note="oligonucleotide binding site [chemical binding]; other site" /db_xref="CDD:88419" gene 1316828..1317847 /locus_tag="Alide2_1252" /db_xref="GeneID:10482280" CDS 1316828..1317847 /locus_tag="Alide2_1252" /inference="protein motif:TFAM:TIGR00005" /note="TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; Zinc finger, FLYWCH-type; KEGG: dia:Dtpsy_2642 pseudouridine synthase, RluA family; SMART: RNA-binding S4" /codon_start=1 /transl_table=11 /product="RluA family pseudouridine synthase" /protein_id="YP_004387172.1" /db_xref="GI:330823869" /db_xref="GO:0003723" /db_xref="GO:0009982" /db_xref="InterPro:IPR002942" /db_xref="InterPro:IPR006145" /db_xref="InterPro:IPR006225" /db_xref="InterPro:IPR007588" /db_xref="GeneID:10482280" /translation="MKHIIGGKPAQGRAPVEAPAARIVEVDAESAGQRLDNFLIRHLK GVPKTHVYRIIRSGEVRLNKGRTSADARVAAGDRVRLPPVRVSDKVQDKAERPAPARE FPILLEDEHLIALDKPAGVAVHGGSGVSFGVIEQLRQARQEARFLELVHRLDRETSGI LLVAKRRSALKHLQDQFRERETGKTYLALVPGAWPANKKVIDLPLHKYLQEDGERRVR VTTPQDSDGMRSITLVKVHSHLPARPLQGLPAMSLLEVTIKTGRTHQIRVHLASQGHP IAGDDKYGDFDLNRRLQKQGLRRMFLHAWRLQFDHPASGERMELRAELPPELAAFLST GHIDA" misc_feature 1316873..1317823 /locus_tag="Alide2_1252" /note="23S rRNA pseudouridylate synthase C; Provisional; Region: PRK11025" /db_xref="CDD:182909" misc_feature 1317227..1317754 /locus_tag="Alide2_1252" /note="PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF...; Region: PseudoU_synth_RluCD_like; cd02869" /db_xref="CDD:30029" misc_feature order(1317278..1317289,1317626..1317628) /locus_tag="Alide2_1252" /note="active site" /db_xref="CDD:30029" gene 1317840..1318511 /locus_tag="Alide2_1253" /db_xref="GeneID:10482281" CDS 1317840..1318511 /locus_tag="Alide2_1253" /inference="protein motif:TFAM:TIGR01509" /note="KEGG: dia:Dtpsy_2641 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase" /codon_start=1 /transl_table=11 /product="HAD-superfamily hydrolase" /protein_id="YP_004387173.1" /db_xref="GI:330823870" /db_xref="GO:0008967" /db_xref="GO:0016787" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006402" /db_xref="InterPro:IPR006439" /db_xref="GeneID:10482281" /translation="MPESPRPRRFDLIAFDWDGTLFDSTAIIVRSIQDAVRDLGGAVP SDEAAAWVIGMALPQALAHAAPDVPREKYAELGNRYRYHYLKRQDDVALFGGVLPMLQ ALRARGHLLAVATGKSRRGLDQVLQMVQLRGMFDGSRTADETAGKPHPLMLQELMAEF GVEPGRLLMIGDTTHDLEMARAAGCASVGVGYGAHDHAGFAEFGPLCVVPSVAELHRW LLENA" misc_feature 1317861..1318502 /locus_tag="Alide2_1253" /note="Predicted phosphatases [General function prediction only]; Region: Gph; COG0546" /db_xref="CDD:30892" misc_feature 1318083..1318409 /locus_tag="Alide2_1253" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature 1318182..1318184 /locus_tag="Alide2_1253" /note="motif II; other site" /db_xref="CDD:119389" gene 1318514..1318885 /locus_tag="Alide2_1254" /db_xref="GeneID:10482282" CDS 1318514..1318885 /locus_tag="Alide2_1254" /inference="protein motif:PFAM:PF00355" /note="PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: dia:Dtpsy_2640 Rieske (2Fe-2S) domain protein" /codon_start=1 /transl_table=11 /product="Rieske (2Fe-2S) iron-sulfur domain-containing protein" /protein_id="YP_004387174.1" /db_xref="GI:330823871" /db_xref="GO:0016491" /db_xref="InterPro:IPR017941" /db_xref="GeneID:10482282" /translation="MPDAQRIPLCASDALVDGGLAAAFDVCYRGQNLRAFAIRYQGRV HAYLNRCTHVAMEMDYQEGHFFDDSGCRLICATHGAVFAPDTGVCLGGPARGPLAKVA LSEEGGMVYWHTAPDLHPVAF" misc_feature 1318529..1318849 /locus_tag="Alide2_1254" /note="Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1)...; Region: Rieske; cd03467" /db_xref="CDD:58538" misc_feature order(1318664..1318666,1318670..1318675,1318736..1318738, 1318742..1318747,1318751..1318753,1318757..1318759) /locus_tag="Alide2_1254" /note="iron-sulfur cluster [ion binding]; other site" /db_xref="CDD:58538" misc_feature order(1318664..1318666,1318670..1318675,1318736..1318738, 1318745..1318747,1318751..1318753) /locus_tag="Alide2_1254" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:58538" gene 1318890..1319930 /locus_tag="Alide2_1255" /db_xref="GeneID:10482283" CDS 1318890..1319930 /locus_tag="Alide2_1255" /inference="protein motif:PFAM:PF01343" /note="PFAM: Peptidase S49; KEGG: dia:Dtpsy_2639 peptidase S49" /codon_start=1 /transl_table=11 /product="peptidase S49" /protein_id="YP_004387175.1" /db_xref="GI:330823872" /db_xref="GO:0008233" /db_xref="InterPro:IPR002142" /db_xref="GeneID:10482283" /translation="MTEPTRTEPTGFDGNQPQPPDLWARNATESEARKAASAAPGWER ELLEKLVLGTLAEQRAARRWRNFWRFGWLVLIVLVGWAVVSRDIASPAKSAPHTAVVD VKGEIAAGAEASAEFVVAAMRSAFEDSGSQAVVLLINSPGGSPVQAGMINDEIVRLKA KYNKPVYAVVEETCASAAYYIAAAADDIFVDKASIVGSIGVLMDGFGFTGTMEKLGVE RRLLTAGENKGFLDPFSPQSPTQRGYAQQMLDQIHQQFIAAVKKGRGERLKATPETFS GLFWTGQQAVEMGLADQFGSLDYVAREIVKAEDVIDYTRRDNVAERLARKFGATFGET VLRGMRAAPVLR" misc_feature 1319178..1319786 /locus_tag="Alide2_1255" /note="Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023" /db_xref="CDD:132934" misc_feature order(1319199..1319201,1319298..1319300,1319415..1319417, 1319460..1319462,1319466..1319468,1319490..1319501, 1319646..1319648,1319718..1319726,1319730..1319732, 1319739..1319741) /locus_tag="Alide2_1255" /note="tandem repeat interface [polypeptide binding]; other site" /db_xref="CDD:132934" misc_feature order(1319235..1319237,1319256..1319258,1319334..1319336, 1319535..1319537,1319541..1319555,1319640..1319642, 1319652..1319654) /locus_tag="Alide2_1255" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132934" misc_feature 1319415..1319417 /locus_tag="Alide2_1255" /note="active site residues [active]" /db_xref="CDD:132934" gene complement(1319935..1320720) /locus_tag="Alide2_1256" /db_xref="GeneID:10482284" CDS complement(1319935..1320720) /locus_tag="Alide2_1256" /inference="protein motif:PFAM:PF00590" /note="PFAM: Tetrapyrrole methylase; KEGG: dia:Dtpsy_2638 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase" /codon_start=1 /transl_table=11 /product="Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase" /protein_id="YP_004387176.1" /db_xref="GI:330823873" /db_xref="GO:0008168" /db_xref="InterPro:IPR000878" /db_xref="GeneID:10482284" /translation="MSGPPSPGTLYLVPAPLDFGCDGETALAEVLPEGTLRRAARLTH WICENAKSCRAYLKRIDALHALAAPLQQQHIAELPREVHKKGDHGGKDHASIDATALL APLLAGHDMGLVSEAGMPAVADPGSSVVRAAHGMGARVVPLVGPVSLLLALAASGLNG QNFAFVGYLPQDAAERAQRMRQLEALALKTGQTQLFIETPYRNAALWQALLQALQPGT RLAVAAGLTLPQAEVQCRSVQQWRALGAPPPGKHVPVVFALGA" misc_feature complement(<1320001..1320708) /locus_tag="Alide2_1256" /note="Predicted methyltransferases [General function prediction only]; Region: COG0313" /db_xref="CDD:30661" misc_feature complement(<1320115..>1320429) /locus_tag="Alide2_1256" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene complement(1320717..1321316) /locus_tag="Alide2_1257" /db_xref="GeneID:10482285" CDS complement(1320717..1321316) /locus_tag="Alide2_1257" /inference="protein motif:TFAM:TIGR00172" /note="KEGG: dia:Dtpsy_2637 maf protein; TIGRFAM: Maf-like protein; PFAM: Maf-like protein" /codon_start=1 /transl_table=11 /product="maf protein" /protein_id="YP_004387177.1" /db_xref="GI:330823874" /db_xref="InterPro:IPR003697" /db_xref="GeneID:10482285" /translation="MPESPPLPRSLVLGSTSRYRRELLARLGLPFDVAAPAVNETPLA GEAPRALALRLALAKARAVAAAHPQAVVIGSDQVADLDGEPLGKPGNHERATAQLRRM RGQTVVFHTALAVVCQATSFEQVDLAPVRVRFRDLSDAEIERYLHAEQPYDCAGSAKS EGLGIALLDAIDSDDPTALIGLPLIRTCRMLRAAGLALP" misc_feature complement(1320744..1321286) /locus_tag="Alide2_1257" /note="Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555" /db_xref="CDD:29954" misc_feature complement(order(1321053..1321055,1321089..1321091, 1321140..1321142,1321197..1321199,1321257..1321259, 1321272..1321274)) /locus_tag="Alide2_1257" /note="active site" /db_xref="CDD:29954" misc_feature complement(order(1320936..1320953,1321158..1321160)) /locus_tag="Alide2_1257" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29954" gene 1321343..1321894 /locus_tag="Alide2_1258" /db_xref="GeneID:10482286" CDS 1321343..1321894 /locus_tag="Alide2_1258" /inference="protein motif:PFAM:PF02620" /note="PFAM: Protein of unknown function DUF177; KEGG: dia:Dtpsy_2636 protein of unknown function DUF177" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387178.1" /db_xref="GI:330823875" /db_xref="InterPro:IPR003772" /db_xref="GeneID:10482286" /translation="MTKEHSPDRLDVKAFAQAGAHLSGHDTLLKYQRLAEEAKGLHPD LRVDWMADGELRTTQGVGGQVWLRLKANATLPMICQRCLQPVDVPLEVDREFRFVADE ATAEALDSDSEEDLLALSREFDLRELIEDELLMALPVVPRHDECPTEVRMASSDEDFK EASVQKPNPFAALAGLRKGKPGG" misc_feature 1321343..1321876 /locus_tag="Alide2_1258" /note="Uncharacterized ACR, COG1399; Region: DUF177; cl00616" /db_xref="CDD:193886" gene 1322031..1322213 /locus_tag="Alide2_1259" /db_xref="GeneID:10482287" CDS 1322031..1322213 /locus_tag="Alide2_1259" /inference="protein motif:TFAM:TIGR01031" /note="KEGG: aav:Aave_1181 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; PFAM: Ribosomal protein L32p" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L32" /protein_id="YP_004387179.1" /db_xref="GI:330823876" /db_xref="GO:0003735" /db_xref="InterPro:IPR002677" /db_xref="GeneID:10482287" /translation="MAVQQNKKSPSKRGMHRSHNALTTPGTAVEPTTGETHLRHHISP NGFYRGRQVLKNKSEA" misc_feature 1322031..1322210 /locus_tag="Alide2_1259" /note="Ribosomal L32p protein family; Region: Ribosomal_L32p; cl09115" /db_xref="CDD:195795" gene 1322336..1323367 /locus_tag="Alide2_1260" /db_xref="GeneID:10482288" CDS 1322336..1323367 /locus_tag="Alide2_1260" /inference="protein motif:HAMAP:MF_00019" /note="PFAM: Fatty acid synthesis PlsX protein; manually curated; TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; KEGG: dia:Dtpsy_2634 putative glycerol-3-phosphate acyltransferase PlsX; HAMAP: Phospholipid biosynthesis protein, PlsX-like" /codon_start=1 /transl_table=11 /product="phosphate acyltransferase" /protein_id="YP_004387180.1" /db_xref="GI:330823877" /db_xref="InterPro:IPR003664" /db_xref="InterPro:IPR012281" /db_xref="GeneID:10482288" /translation="MITLAVDCMGGDHGPGVTLPACRQFLAHHPEARLLLVGQPASLQ GLAHERAAVVAASEVVSMDDPVEVALRRKKDSSMRVAIQQVKDGAAQAAVSAGNTGAL MAIARYLLKTLDGIDRPAIATQMPNERGGATTVLDLGANVDCSAEHLLQFAVMGSALV SALKNTDAPSVGLLNIGEELIKGSEIIKKAGELLRSAANSGDLNFHGNVEGNDIFKGT VDIVVCDGFVGNVALKASEGVASMIVGALKQEFSRGILTKMAAIVAYPVLSALMRRMD HRRYNGAALLGLRGLVFKSHGSADVLAFEQALNRAYDAARNNLLDRVRARVAHAAPLL TAAGAQTAS" misc_feature 1322336..1323307 /locus_tag="Alide2_1260" /note="Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl00390" /db_xref="CDD:193798" gene 1323389..1324369 /locus_tag="Alide2_1261" /db_xref="GeneID:10482289" CDS 1323389..1324369 /locus_tag="Alide2_1261" /EC_number="2.3.1.41" /inference="protein motif:TFAM:TIGR00747" /note="TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: dia:Dtpsy_2633 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) synthase III" /protein_id="YP_004387181.1" /db_xref="GI:330823878" /db_xref="GO:0004315" /db_xref="InterPro:IPR004655" /db_xref="InterPro:IPR013747" /db_xref="InterPro:IPR013751" /db_xref="GeneID:10482289" /translation="MRRYSRITGTGSWLPPRRVTNDDLVAQLAGQGIETSDEWIVERT GIRARHFAERDVASSDLALEASRRALEAAGREAQDIDLIIVATSTPDMVFPSTAAILQ HKLGITNGCPVFDVQAVCSGFVYALTVADAMIQSGAASRALVVGSEVFSRILDFHDRT TCVLFGDGAGAVVLEASDTPGILASELHADGSHVGILCVPGNVCGGQVLGDPLLKMDG QAVFKLAVGVLEKAARAALDKAGLKDADIDWLIPHQANIRIMQSTARKLKMSMDKVVV TVDQHGNTSAASIPLALDHAVRCGQVRPGQIVMLEGVGGGFTWGAILLKM" misc_feature 1323392..1324366 /locus_tag="Alide2_1261" /note="3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352" /db_xref="CDD:181792" misc_feature 1323398..1324360 /locus_tag="Alide2_1261" /note="Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830" /db_xref="CDD:29417" misc_feature order(1323650..1323652,1323656..1323658,1323683..1323685, 1323692..1323694,1323719..1323739,1323761..1323763, 1323770..1323775,1323782..1323787,1323842..1323844, 1323947..1323964,1323980..1323985,1324334..1324336) /locus_tag="Alide2_1261" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29417" misc_feature order(1323746..1323748,1324145..1324147,1324235..1324237) /locus_tag="Alide2_1261" /note="active site" /db_xref="CDD:29417" misc_feature 1324154..1324156 /locus_tag="Alide2_1261" /note="CoA binding pocket [chemical binding]; other site" /db_xref="CDD:29417" gene 1324431..1325384 /locus_tag="Alide2_1262" /db_xref="GeneID:10482290" CDS 1324431..1325384 /locus_tag="Alide2_1262" /EC_number="2.3.1.39" /inference="protein motif:TFAM:TIGR00128" /note="TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase" /codon_start=1 /transl_table=11 /product="malonyl CoA-acyl carrier protein transacylase" /protein_id="YP_004387182.1" /db_xref="GI:330823879" /db_xref="GO:0004314" /db_xref="InterPro:IPR004410" /db_xref="InterPro:IPR014043" /db_xref="GeneID:10482290" /translation="MAKTFAFVFPGQGSQSVGMLDAWGDHPVVAETLREASDALGEDV GALIHSGPKEALALTTNTQPVMLVAGVAAWRAWRAEGGALPAAVAGHSLGEYSALVAS GALTLAQAAPLVRLRAAAMQEAVPVGAGAMAAILGLDAAKVIAGCAEATASFGAGSPE VVEAVNFNDPAQTVIAGTKAGVDKACEVLKAAGAKRALPLPVSAPFHSSLMKSAAEKL RTALAALELAAPQIPVINNVDVAVQQDADAIRDALYRQAFGPVRWVECVQALKARGVT HVIECGPGKVLAGMTKRISPELIGASLSDPATLAETKELLA" misc_feature 1324443..1325372 /locus_tag="Alide2_1262" /note="Acyl transferase domain; Region: Acyl_transf_1; cl08282" /db_xref="CDD:186816" misc_feature 1324443..1325324 /locus_tag="Alide2_1262" /note="malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128" /db_xref="CDD:188028" gene 1325381..1326118 /locus_tag="Alide2_1263" /db_xref="GeneID:10482291" CDS 1325381..1326118 /locus_tag="Alide2_1263" /inference="protein motif:TFAM:TIGR01830" /note="KEGG: dia:Dtpsy_2631 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004387183.1" /db_xref="GI:330823880" /db_xref="GO:0004316" /db_xref="GO:0051287" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR011284" /db_xref="GeneID:10482291" /translation="MSETTPQIALVTGATRGIGAAIAAELAGRGLRVIGTATTDEGAE RITQVLAAWGGKGVKLNVTDGAAVDALVDAIVKEHGGLHVLVNNAGITRDTLAMRMKD DDWDAVLDTNLKAVFRVSRAAIRPMMKQRFGRIISITSVVGASGNPGQANYAAAKAGV AGMTRALARELGSRGITVNCVAPGFIATDMTADLPEEQKKALKSQIAMGDLGQPSDIA HAVAYLASAGAGYVTGQELHVNGGMYM" misc_feature 1325399..1326109 /locus_tag="Alide2_1263" /note="gluconate 5-dehydrogenase; Provisional; Region: PRK06124" /db_xref="CDD:180412" misc_feature 1325477..1326112 /locus_tag="Alide2_1263" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(1325489..1325497,1325642..1325650,1325792..1325800, 1325837..1325839,1325849..1325851,1325927..1325938) /locus_tag="Alide2_1263" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1325714..1325716,1325798..1325800,1325837..1325839, 1325849..1325851) /locus_tag="Alide2_1263" /note="active site" /db_xref="CDD:187535" gene 1326222..1326461 /locus_tag="Alide2_1264" /db_xref="GeneID:10482292" CDS 1326222..1326461 /locus_tag="Alide2_1264" /inference="protein motif:HAMAP:MF_01217" /note="SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Acyl carrier protein (ACP); KEGG: ctt:CtCNB1_0973 acyl carrier protein; HAMAP: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding" /codon_start=1 /transl_table=11 /product="acyl carrier protein" /protein_id="YP_004387184.1" /db_xref="GI:330823881" /db_xref="InterPro:IPR003231" /db_xref="InterPro:IPR006163" /db_xref="InterPro:IPR020806" /db_xref="GeneID:10482292" /translation="MSDIEARVKKIIAEQLGVEESQVTNEKAFVADLGADSLDTVELV MALEDEFGIEIPDEDAEKITTVQNAIDYANTHQKA" misc_feature 1326222..1326455 /locus_tag="Alide2_1264" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" gene 1326520..1327764 /locus_tag="Alide2_1265" /db_xref="GeneID:10482293" CDS 1326520..1327764 /locus_tag="Alide2_1265" /EC_number="2.3.1.179" /inference="protein motif:TFAM:TIGR03150" /note="TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: dia:Dtpsy_2629 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) synthase 2" /protein_id="YP_004387185.1" /db_xref="GI:330823882" /db_xref="GO:0051287" /db_xref="InterPro:IPR014030" /db_xref="InterPro:IPR014031" /db_xref="InterPro:IPR017568" /db_xref="GeneID:10482293" /translation="MSRRRVVVTGLGCITPVGNTVADAWANILAGKSGIDLITKFDTT NFACRIAGEVKGFDLESYISAKDARTMDSFIHYGIAAAQEAVRDAGLPTGEALDEELA TRIGCIIGSGIGGLPLIENTHAELTSRGPRRITPFFVPASIINMVAGHVSMRFGFKGP NLSVVTACTTGLHCIGEGARKIEYGDADVIVAGGTESTVSPLGVGGFAAMRALSTRND DPKTASRPWDKDRDGFVLGEGAGVLVLEEYEHAKARGARIYAEITGYGMSADAGHMTA PNMDGPRRAMQAALRNARLNADQVDYLNAHGTSTPLGDLNETNAIKAALGDHAKKMVV SSTKSMTGHLLGGAGGIESVFTVLALHHQKVPPTINIFTQDPECDLDYCANTARDMKM DVALKNNFGFGGTNGTLVFQRV" misc_feature 1326529..1327752 /locus_tag="Alide2_1265" /note="Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834" /db_xref="CDD:29421" misc_feature 1326529..1327752 /locus_tag="Alide2_1265" /note="beta-ketoacyl-acyl-carrier-protein synthase II; Region: fabF; TIGR03150" /db_xref="CDD:163158" misc_feature order(1326853..1326855,1326874..1326879,1326889..1326891, 1326895..1326900,1326934..1326936,1326952..1326954, 1326964..1326966,1326976..1326978,1326994..1326996, 1327000..1327002,1327006..1327014,1327048..1327050, 1327057..1327062,1327069..1327071,1327132..1327137, 1327144..1327149,1327321..1327335,1327369..1327371, 1327726..1327728,1327732..1327734) /locus_tag="Alide2_1265" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29421" misc_feature order(1327021..1327023,1327435..1327437,1327546..1327548) /locus_tag="Alide2_1265" /note="active site" /db_xref="CDD:29421" gene 1327827..1328348 /locus_tag="Alide2_1266" /db_xref="GeneID:10482294" CDS 1327827..1328348 /locus_tag="Alide2_1266" /inference="similar to AA sequence:KEGG:Dtpsy_2628" /note="KEGG: dia:Dtpsy_2628 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387186.1" /db_xref="GI:330823883" /db_xref="GeneID:10482294" /translation="MRAPLHAPAVRYPCGRSPAVGWALAIVAATALAGMAAWLELGTA DADMAVKAAAGLGLWLSCTAAAWLWWRRMPMGHLAWDGGQWLLDCGAPGPDPVQGKPH VHLDLQGCLLLSVRLLRGRPSWLWLERRSDPVQWAALRRAVYSPARSKAPDPAEATDA APPALDGGVTTKT" gene 1328345..1328980 /locus_tag="Alide2_1267" /db_xref="GeneID:10482295" CDS 1328345..1328980 /locus_tag="Alide2_1267" /inference="protein motif:TFAM:TIGR02939" /note="KEGG: dia:Dtpsy_2627 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2" /codon_start=1 /transl_table=11 /product="ECF subfamily RNA polymerase sigma-24 subunit" /protein_id="YP_004387187.1" /db_xref="GI:330823884" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0016987" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="InterPro:IPR014286" /db_xref="GeneID:10482295" /translation="MTAPSPAPPDSADSDLRLVERTVAGDQRAYELLVIKYQRRIERL VGRMVRDVDLIPDITQETFLRAYRALHQFRGEAQFYTWLYRIAVNTAKKALVDIKRDP VISESSLRGGGDEEDETSLLDRELTSDETPETVLAAQEVAAAVNAAMEALPEDLRQAV TLREIEGLSYEEISVAMACPIGTVRSRIFRAREAISAKVKPLLEKQSGKRW" misc_feature 1328399..1328959 /locus_tag="Alide2_1267" /note="RNA polymerase sigma factor RpoE; Provisional; Region: PRK09652" /db_xref="CDD:182019" misc_feature 1328441..1328644 /locus_tag="Alide2_1267" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature 1328798..1328929 /locus_tag="Alide2_1267" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature order(1328801..1328803,1328831..1328833,1328849..1328854, 1328882..1328884,1328888..1328893,1328897..1328905, 1328909..1328914,1328918..1328920) /locus_tag="Alide2_1267" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene 1329005..1329655 /locus_tag="Alide2_1268" /db_xref="GeneID:10482296" CDS 1329005..1329655 /locus_tag="Alide2_1268" /inference="protein motif:PFAM:PF03872" /note="PFAM: Anti sigma-E protein RseA, N-terminal; KEGG: dia:Dtpsy_2626 anti sigma-E protein, RseA" /codon_start=1 /transl_table=11 /product="anti sigma-E protein RseA family protein" /protein_id="YP_004387188.1" /db_xref="GI:330823885" /db_xref="GO:0005515" /db_xref="GO:0016989" /db_xref="InterPro:IPR005572" /db_xref="GeneID:10482296" /translation="MAGDSMNDDARMREHLSALADGELQGEAFAQAVAYAATEEGESA WRIYHLIGDTLRSSEVTYVADPAFLGRLREQLALEPRHAGVATAQPLVQVAPAPREAA PHAQDAAANASVFRWKLAAGFASLAAVAALGWNAYLGLGGTAPQGAQLAAAQPPAEAV APAFVATAGGPQGQQIMIRDPRLDELLAAHKQFGSTSALQMPAGFLRNATFEAPAR" misc_feature 1329035..1329274 /locus_tag="Alide2_1268" /note="Anti sigma-E protein RseA, N-terminal domain; Region: RseA_N; pfam03872" /db_xref="CDD:146482" gene 1329766..1330764 /locus_tag="Alide2_1269" /db_xref="GeneID:10482297" CDS 1329766..1330764 /locus_tag="Alide2_1269" /inference="protein motif:PFAM:PF03888" /note="KEGG: dia:Dtpsy_2625 sigma E regulatory protein, MucB/RseB; manually curated; PFAM: MucB/RseB" /codon_start=1 /transl_table=11 /product="sigma E regulatory protein, MucB/RseB" /protein_id="YP_004387189.1" /db_xref="GI:330823886" /db_xref="InterPro:IPR005588" /db_xref="GeneID:10482297" /translation="MVGCMLMAAAPATRAHEAGAAAPGEARESMDVAAWIGRMRQAAL ERNYSGTFVVLSAHGAMASYRIWHACDGQRQIERVEALSGTPRIVFRRDGEVRTFLPQ ERVVRSEMRQAPGSFPGVPAASGAQPARHYMVRMGRPERVAGLDADMLDFVPRDAWRF GYRVWIDRASGLLMKMQTIDGDGRVLEQSAFSELTMGVPLGLQSMARMMADVAGYRLV TVPTQPTTAQAEGWTLDESVAGFAPQGCYRRHGLAPAEPARPVVQCIYSDGMATLSVF MEPYSVRRHPLTEQVASMGATQVLAQKVSGDTWVTVVGEVPQRTLRYFMQTMRRGR" misc_feature 1329862..1330752 /locus_tag="Alide2_1269" /note="Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl01065" /db_xref="CDD:194024" gene 1330874..1332355 /locus_tag="Alide2_1270" /db_xref="GeneID:10482298" CDS 1330874..1332355 /locus_tag="Alide2_1270" /EC_number="3.4.21.108" /inference="protein motif:TFAM:TIGR02037" /note="SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: dia:Dtpsy_2624 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF" /codon_start=1 /transl_table=11 /product="protease Do" /protein_id="YP_004387190.1" /db_xref="GI:330823887" /db_xref="GO:0004252" /db_xref="InterPro:IPR001254" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR011782" /db_xref="GeneID:10482298" /translation="MMSRIEWKQGLQSCVLAVVVVLAGGTGLLAGASAAHAQSAPALR GLPDFTELVEQVGPSVVNIRTMEKVAARPSIDGMDEDMLEFFKRFGLPVPNIPRQQGP RRQQPEEQPRGVGSGFILSSDGYVMTNAHVVEGADEVVVTLTDKREFKAKIVGADKRT DVAVVKIDATGLPAVRVGDVSRLKAGEWVMAIGSPFGLENTVTAGIVSAKQRDTGDYL PFIQTDVAINPGNSGGPLINMRGEVVGINSQIYSRSGGFMGISFAIPIDEAMRVSEQL RTSGRVTRGRIGVQIESVSKEVAESIGLGKSQGALVRGVEPGSPAEKAGIEAGDIITR YDGKTVEKVADLPRLVGNTKPGTKTSITVFRRGATRDLTITIAEVEPDEKAVAKAAEG NGKGKSPSVAAQQLGLVVAELTPAQAKELKIKGGVRVVSAEDAAARAGLRADDVIVAL ANLEIRNLKDFEAALAKADKSKPVNVLLRRGEWAQYVLIRPAR" sig_peptide 1330874..1330987 /locus_tag="Alide2_1270" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.985 at residue 38" misc_feature 1331012..1332340 /locus_tag="Alide2_1270" /note="periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037" /db_xref="CDD:162670" misc_feature 1331222..1331674 /locus_tag="Alide2_1270" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" misc_feature 1331726..1331995 /locus_tag="Alide2_1270" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature order(1331729..1331740,1331744..1331746,1331897..1331902, 1331909..1331914) /locus_tag="Alide2_1270" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" gene 1332780..1334588 /locus_tag="Alide2_1271" /db_xref="GeneID:10482299" CDS 1332780..1334588 /locus_tag="Alide2_1271" /inference="protein motif:TFAM:TIGR01393" /note="TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; GTP-binding protein LepA, C-terminal; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: dia:Dtpsy_2623 GTP-binding protein LepA; SMART: Translation elongation factor EFG/EF2, C-terminal" /codon_start=1 /transl_table=11 /product="GTP-binding protein LepA" /protein_id="YP_004387191.1" /db_xref="GI:330823888" /db_xref="GO:0005525" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006297" /db_xref="InterPro:IPR013842" /db_xref="GeneID:10482299" /translation="MNHIRNFSIIAHIDHGKSTLADRIIQRCGGLAEREMEAQVLDSM DIEKERGITIKAQTAALQYKARDGQVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVV DASQGVEAQTVANCYTALDLGVEVLPVLNKMDLPQADPENAKAEIEDVIGIDASEALP ISAKTGMGIDDVLEQIVAKVPAPRGKPDAPLRAMIIDSWFDSYVGVVMLVRVVDGELK KGERFKMMATSAAYEANQLGVFTPANVQRDALRAGEVGYIIAGIKELKAAKVGDTITL EKKLPNNAGPATEALPGFKEIQPQVFAGLYPTEANQYDALRDALEKLQLNDASLHFEP EVSQALGFGFRCGFLGLLHMEIVQERLEREFDQDLITTAPSVVYEVVKGDGEVIMVEN PSKMPDQGRIQEIREPIVTVHLYMPQDYVGPVMTLANQKRGVQMNMQYHGRQVMLTYE LPLGEIVLDFFDKLKSVSRGYASMDYEFKEYRASDVVKVDILLNGEKVDALSIIVHRT QAAYRGRAVAAKMREIISRQMFDVAIQAAIGANIIARETIKALRKNVLAKCYGGDITR KRKLLEKQKAGKKRMKQIGSVEVPQEAFLAILQVED" misc_feature 1332780..1334585 /locus_tag="Alide2_1271" /note="GTP-binding protein LepA; Provisional; Region: PRK05433" /db_xref="CDD:180078" misc_feature 1332792..1333328 /locus_tag="Alide2_1271" /note="LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and...; Region: LepA; cd01890" /db_xref="CDD:133290" misc_feature 1332810..1332833 /locus_tag="Alide2_1271" /note="G1 box; other site" /db_xref="CDD:133290" misc_feature order(1332813..1332815,1332819..1332821,1332831..1332836, 1332843..1332845,1332852..1332857,1332948..1332953, 1333020..1333025,1333092..1333097,1333203..1333205, 1333215..1333217) /locus_tag="Alide2_1271" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133290" misc_feature order(1332819..1332836,1333170..1333175,1333179..1333181, 1333263..1333271) /locus_tag="Alide2_1271" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133290" misc_feature 1332915..1332950 /locus_tag="Alide2_1271" /note="Switch I region; other site" /db_xref="CDD:133290" misc_feature 1332936..1332938 /locus_tag="Alide2_1271" /note="G2 box; other site" /db_xref="CDD:133290" misc_feature 1333008..1333019 /locus_tag="Alide2_1271" /note="G3 box; other site" /db_xref="CDD:133290" misc_feature 1333014..1333070 /locus_tag="Alide2_1271" /note="Switch II region; other site" /db_xref="CDD:133290" misc_feature 1333170..1333181 /locus_tag="Alide2_1271" /note="G4 box; other site" /db_xref="CDD:133290" misc_feature 1333263..1333271 /locus_tag="Alide2_1271" /note="G5 box; other site" /db_xref="CDD:133290" misc_feature 1333350..1333607 /locus_tag="Alide2_1271" /note="lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-...; Region: lepA_II; cd03699" /db_xref="CDD:58090" misc_feature 1333998..1334234 /locus_tag="Alide2_1271" /note="lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709" /db_xref="CDD:58062" misc_feature 1334256..1334579 /locus_tag="Alide2_1271" /note="GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421" /db_xref="CDD:191515" gene 1334595..1335569 /locus_tag="Alide2_1272" /db_xref="GeneID:10482300" CDS 1334595..1335569 /locus_tag="Alide2_1272" /inference="protein motif:TFAM:TIGR02227" /note="KEGG: dia:Dtpsy_2622 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region" /codon_start=1 /transl_table=11 /product="signal peptidase I" /protein_id="YP_004387192.1" /db_xref="GI:330823889" /db_xref="GO:0008236" /db_xref="InterPro:IPR000223" /db_xref="InterPro:IPR019533" /db_xref="InterPro:IPR019759" /db_xref="GeneID:10482300" /translation="MQAMQYITGAVLAAFVGYIGAWYVGAIEGNFALLLFLATVVTGG YWLAERLVFLPRRRKAAQALEDAAARRRAELDRMGIQKVDGDVEEAKGRILMQPWWLD WTAGLFPVIAVVFLLRSFLFEPFKIPSGSMIPTLLVGDLILVNKFTYGLRLPVLNTKI TQGKPIERGDVVVFRYPPQPSMDYIKRVVGLPGDEVAYLNKRLTVNGQSVPATALPDF FDRDAMRYFKQFEEQLGTHRHRILNNPEMPAFVQGASNYQFRDQCRYSVEGVACTVPE GHYFMMGDNRDNSLDSRYWGFVPDANIVGKAFFVWMNFGDLKRIGSFN" misc_feature 1334685..1335536 /locus_tag="Alide2_1272" /note="signal peptidase I; Provisional; Region: PRK10861" /db_xref="CDD:182787" misc_feature 1334961..>1335167 /locus_tag="Alide2_1272" /note="The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530" /db_xref="CDD:119398" misc_feature order(1334985..1334987,1335150..1335152) /locus_tag="Alide2_1272" /note="Catalytic site [active]" /db_xref="CDD:119398" misc_feature <1335429..1335515 /locus_tag="Alide2_1272" /note="The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530" /db_xref="CDD:119398" gene 1335577..1335948 /locus_tag="Alide2_1273" /db_xref="GeneID:10482301" CDS 1335577..1335948 /locus_tag="Alide2_1273" /inference="similar to AA sequence:KEGG:Dtpsy_2621" /note="KEGG: dia:Dtpsy_2621 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="YP_004387193.1" /db_xref="GI:330823890" /db_xref="GeneID:10482301" /translation="MGMGLQRTAARSRQRGLSFIGVIFVGVLAVAAFAIGGQSVPVFI EYAAIKKAATKAAREGSTVPEIRAAFDRAAQIDDIHSISGQDLEITKRNDKVVVSFSY SREIPLAGPAYLVYRFKESTN" sig_peptide 1335577..1335681 /locus_tag="Alide2_1273" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.770) with cleavage site probability 0.647 at residue 35" gene 1335951..1336637 /locus_tag="Alide2_1274" /db_xref="GeneID:10482302" CDS 1335951..1336637 /locus_tag="Alide2_1274" /EC_number="3.1.26.3" /inference="protein motif:HAMAP:MF_00104" /note="KEGG: ajs:Ajs_3267 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA-binding" /codon_start=1 /transl_table=11 /product="ribonuclease 3" /protein_id="YP_004387194.1" /db_xref="GI:330823891" /db_xref="InterPro:IPR000999" /db_xref="InterPro:IPR001159" /db_xref="InterPro:IPR011907" /db_xref="GeneID:10482302" /translation="MPPDSLPALQQRLQHMFSDPSLLQRAVTHRSFSADHNERLEFLG DSVLNLAVSSLLFKRMQGLPEGELSRVRALLVRQESLHGIAVRLQLPQVLRLGEGESR SGGKMRPSILADALEAVIGAVYLDAGYEQAQALVHRLFEGVELSPRLQEAAKDAKTAL QEWLQGRKMSLPQYRVVQTTGVAHKQVFHVACEVPALQLAERGSGASRRAAEQAAAAA MLAQLKAKHA" misc_feature 1336011..1336373 /locus_tag="Alide2_1274" /note="RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-...; Region: RIBOc; cd00593" /db_xref="CDD:29697" misc_feature order(1336062..1336067,1336074..1336079,1336086..1336088, 1336095..1336100,1336107..1336112,1336116..1336124, 1336152..1336154,1336320..1336322,1336347..1336349) /locus_tag="Alide2_1274" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29697" misc_feature order(1336062..1336064,1336071..1336073,1336083..1336085, 1336290..1336292,1336299..1336301) /locus_tag="Alide2_1274" /note="active site" /db_xref="CDD:29697" misc_feature order(1336071..1336073,1336290..1336292,1336299..1336301) /locus_tag="Alide2_1274" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29697" misc_feature 1336413..>1336532 /locus_tag="Alide2_1274" /note="Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase...; Region: DSRM; cd00048" /db_xref="CDD:28930" gene 1336706..1337647 /locus_tag="Alide2_1275" /db_xref="GeneID:10482303" CDS 1336706..1337647 /locus_tag="Alide2_1275" /inference="protein motif:TFAM:TIGR00436" /note="KEGG: dia:Dtpsy_2619 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2" /codon_start=1 /transl_table=11 /product="GTP-binding protein Era" /protein_id="YP_004387195.1" /db_xref="GI:330823892" /db_xref="GO:0003723" /db_xref="GO:0005525" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR004044" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR005662" /db_xref="GeneID:10482303" /translation="MLAAARAGGSAAGDAAGQRCGLIAIVGKPNVGKSTLMNALVGQK ISITSRKAQTTRHRITGIRTRGQTQFVFVDTPGFQTRHSTALNKSLNKTVMGAIGDVD LILFVVEAGSFTLADAKVLSLFKPGIPTLLIANKLDTVHRRAEIAPWLKGMQERHPFA EFVPMSAKNKGDIERLFGICEKYLPEQPWWYAEDELTDRSEKFLASETVREKLFRFTG DELPYTSTVVIDKWDEEKSKQYKRFIRIAATIVVERDGHKAMVIGEKGERLKRISTEA RQELEKLLDAKVFLEVWVKVRSGWADDEARVRSFGYE" misc_feature 1336757..1337641 /locus_tag="Alide2_1275" /note="GTPase Era; Reviewed; Region: era; PRK00089" /db_xref="CDD:178854" misc_feature 1336757..1337257 /locus_tag="Alide2_1275" /note="Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit...; Region: Era; cd04163" /db_xref="CDD:133363" misc_feature 1336784..1336807 /locus_tag="Alide2_1275" /note="G1 box; other site" /db_xref="CDD:133363" misc_feature order(1336790..1336810,1336850..1336852,1336862..1336870, 1336934..1336936,1337108..1337113,1337117..1337119, 1337201..1337206) /locus_tag="Alide2_1275" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133363" misc_feature order(1336829..1336831,1336835..1336879) /locus_tag="Alide2_1275" /note="Switch I region; other site" /db_xref="CDD:133363" misc_feature 1336868..1336870 /locus_tag="Alide2_1275" /note="G2 box; other site" /db_xref="CDD:133363" misc_feature order(1336922..1336939,1337000..1337005) /locus_tag="Alide2_1275" /note="Switch II region; other site" /db_xref="CDD:133363" misc_feature 1336925..1336936 /locus_tag="Alide2_1275" /note="G3 box; other site" /db_xref="CDD:133363" misc_feature 1337108..1337119 /locus_tag="Alide2_1275" /note="G4 box; other site" /db_xref="CDD:133363" misc_feature 1337201..1337209 /locus_tag="Alide2_1275" /note="G5 box; other site" /db_xref="CDD:133363" misc_feature 1337447..>1337584 /locus_tag="Alide2_1275" /note="K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains...; Region: KH-I; cl00098" /db_xref="CDD:193658" gene 1337869..1338642 /locus_tag="Alide2_1276" /db_xref="GeneID:10482304" CDS 1337869..1338642 /locus_tag="Alide2_1276" /inference="protein motif:TFAM:TIGR00613" /note="KEGG: ajs:Ajs_3265 DNA repair protein RecO; TIGRFAM: Recombination protein O, RecO; PFAM: DNA replication/recombination mediator RecO, N-terminal; Recombination protein O, RecO" /codon_start=1 /transl_table=11 /product="DNA repair protein RecO" /protein_id="YP_004387196.1" /db_xref="GI:330823893" /db_xref="InterPro:IPR003717" /db_xref="InterPro:IPR022572" /db_xref="GeneID:10482304" /translation="MATRRIVDEPAYILHAYDWSESSLILDVFTCHYGRVALVAKGAK KPTSNFRPVLLPLQPLRLAWGLAGEVGQGEIHTLKAAEWVGGHVLPTGDALLSGLYLN ELLLRLLAREDTHAQLFDLYAGVVRVLGSGAHGEALEPVLRAFELLLLREIGLLPALD AETATLGALAPQSRYALVAEGGLRAAAHGERAALTGAQWLVLQRALEQGYTAVLRAVA GAGAPATGELKAQLRALLQYHCGSPLLRTRQLMMDLQSL" misc_feature 1337881..1338129 /locus_tag="Alide2_1276" /note="Recombination protein O N terminal; Region: RecO_N; pfam11967" /db_xref="CDD:152402" misc_feature 1337893..1338639 /locus_tag="Alide2_1276" /note="DNA repair protein RecO; Reviewed; Region: recO; PRK00085" /db_xref="CDD:178852" gene 1338639..1339406 /locus_tag="Alide2_1277" /db_xref="GeneID:10482305" CDS 1338639..1339406 /locus_tag="Alide2_1277" /EC_number="2.6.99.2" /inference="protein motif:TFAM:TIGR00559" /note="TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: dia:Dtpsy_2616 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ" /codon_start=1 /transl_table=11 /product="pyridoxal phosphate biosynthetic protein PdxJ" /protein_id="YP_004387197.1" /db_xref="GI:330823894" /db_xref="InterPro:IPR004569" /db_xref="GeneID:10482305" /translation="MTSLPRTALSVNVNKVALVRNTRHLGIPSVTRAAQLCLQAGAQG ITVHPRPDERHIRAQDVHELAALLKQWPQAEFNIEGNPTHNLMEFICQVLPAQATFVP DSVGQFTSDHGWRFPEDAERLAPLVAECKALGVRVSLFMDPVPEQMAAARAVGADRVE LYTEPYAAAWGTPRQSAELARYRDAAQAALDAGLGVNAGHDLNRDNLADFLAAVPGVL EVSIGHALIADALELGYGDTVRAYQRCIDQGMLERDS" misc_feature 1338663..1339376 /locus_tag="Alide2_1277" /note="Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the...; Region: PNPsynthase; cd00003" /db_xref="CDD:58644" misc_feature order(1338672..1338674,1338678..1338683,1338705..1338707, 1338780..1338782,1338786..1338788,1338798..1338803, 1338873..1338875,1338963..1338968,1338975..1338977, 1339056..1339058,1339116..1339118,1339236..1339241, 1339305..1339310) /locus_tag="Alide2_1277" /note="active site" /db_xref="CDD:58644" misc_feature order(1338672..1338674,1338774..1338776,1338861..1338863, 1338867..1338869,1338873..1338875,1338927..1338929, 1338933..1338935,1339050..1339052,1339056..1339058, 1339110..1339112,1339116..1339118,1339227..1339229, 1339236..1339238,1339290..1339295,1339299..1339301) /locus_tag="Alide2_1277" /note="hydrophilic channel; other site" /db_xref="CDD:58644" misc_feature order(1338705..1338707,1339137..1339142) /locus_tag="Alide2_1277" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:58644" misc_feature order(1338780..1338782,1338873..1338875,1339116..1339118, 1339236..1339238) /locus_tag="Alide2_1277" /note="catalytic residues [active]" /db_xref="CDD:58644" misc_feature 1338945..1338977 /locus_tag="Alide2_1277" /note="active site lid [active]" /db_xref="CDD:58644" gene 1339464..1339856 /locus_tag="Alide2_1278" /db_xref="GeneID:10482306" CDS 1339464..1339856 /locus_tag="Alide2_1278" /inference="protein motif:TFAM:TIGR00556" /note="KEGG: dia:Dtpsy_2615 4'-phosphopantetheinyl transferase; TIGRFAM: Phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; PFAM: 4'-phosphopantetheinyl transferase" /codon_start=1 /transl_table=11 /product="phosphopantetheine-protein transferase" /protein_id="YP_004387198.1" /db_xref="GI:330823895" /db_xref="GO:0000287" /db_xref="GO:0008897" /db_xref="InterPro:IPR002582" /db_xref="InterPro:IPR004568" /db_xref="InterPro:IPR008278" /db_xref="GeneID:10482306" /translation="MIYGIGTDICDVRRIRDSLARHGDRFAEKVLADGELATWRARGA RWPERGVRYLATRFSAKEAFSKAIGLGLRMPMTWRHCEVAKLASGQPTIVLHGALKDW FEARGLRCHLSVTDESDYAASFCVVEKD" misc_feature 1339464..1339853 /locus_tag="Alide2_1278" /note="4'-phosphopantetheinyl transferase superfamily; Region: ACPS; cl00500" /db_xref="CDD:193842" gene 1339921..1341003 /locus_tag="Alide2_1279" /db_xref="GeneID:10482307" CDS 1339921..1341003 /locus_tag="Alide2_1279" /inference="protein motif:PFAM:PF00933" /note="PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: dia:Dtpsy_2614 beta-N-acetylhexosaminidase" /codon_start=1 /transl_table=11 /product="glycoside hydrolase family 3 domain-containing protein" /protein_id="YP_004387199.1" /db_xref="GI:330823896" /db_xref="GO:0008897" /db_xref="InterPro:IPR001764" /db_xref="GeneID:10482307" /translation="MTEHAPLIIDVAGTQLSADDRRRLAHPLVGGVILFARNWQDRAQ LLALTAAIKAVRHDLLICVDHEGGRVQRFRTDGFTHIPPMRAFGELWMNDGKAGQGSG ALRAMEAATAAGYVLGSELRACGVDFSFTPVLDLDWGESGVIGDRAFHRDPRVVAMLA RALMQGLLQAGMANCGKHFPGHGFVRADSHTEIPVDRRSLKAILQDDAAPYPWLSTVL TSVMPAHVIYPKVDGRPAGFSARWLQDILRGRLRFDGAIFSDDLSMEGARRIDGQVVG YTDAGVAALNAGCDLVLLCNQSLGDGQAVDELIAGLADAQAAGRWQASRASEARRQAL LPETLPQPWDDLMVQPAYMHALDLLP" misc_feature 1339936..1340997 /locus_tag="Alide2_1279" /note="Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; cl07971" /db_xref="CDD:186723" gene 1341000..1342067 /locus_tag="Alide2_1280" /db_xref="GeneID:10482308" CDS 1341000..1342067 /locus_tag="Alide2_1280" /EC_number="2.7.1.11" /inference="protein motif:PRIAM:2.7.1.11" /note="KEGG: ajs:Ajs_3260 6-phosphofructokinase; PFAM: Phosphofructokinase domain" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase" /protein_id="YP_004387200.1" /db_xref="GI:330823897" /db_xref="InterPro:IPR000023" /db_xref="GeneID:10482308" /translation="MNMRIGVLTGGGDCPGLNAVIRAVTKSLIQHGHGKGVEVLGILD GFEGLMGDTPRARPLVWDRVSGILHMGGTILGTSNSANPLKDEATLEQVRRNVRALGL DVVVAIGGDGTMSLAHGLQKIGLACVGVPKTIDNDIALCERSFGFDTAVATATDALRR VESTANSHHRVMIVETMGRHAGWLALESGIAGAADVILLPEIDYDLQAIIDRCREREQ RQRYTIICIGEGAKPRGGEITVRERVAGSPDPVRLGGVGHVLRQQLQPHLKSEVRTTV LGYVQRGGDPTPFDRVLATRFGHHAAQLVIAGQLDRMVTLQDGRIGSVEIARVANTQR KVPPNHDLITMARDIGVCLGD" misc_feature 1341006..1342049 /locus_tag="Alide2_1280" /note="6-phosphofructokinase; Provisional; Region: PRK03202" /db_xref="CDD:179553" misc_feature 1341009..1341956 /locus_tag="Alide2_1280" /note="Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases...; Region: PFK; cl00204" /db_xref="CDD:193705" misc_feature order(1341033..1341035,1341135..1341137,1341234..1341236, 1341330..1341338,1341342..1341347,1341396..1341398, 1341402..1341404,1341408..1341410,1341528..1341536, 1341684..1341686,1341834..1341836,1341843..1341845) /locus_tag="Alide2_1280" /note="active site" /db_xref="CDD:29437" misc_feature order(1341033..1341035,1341135..1341137,1341234..1341236, 1341330..1341338,1341342..1341347) /locus_tag="Alide2_1280" /note="ADP/pyrophosphate binding site [chemical binding]; other site" /db_xref="CDD:29437" misc_feature order(1341063..1341065,1341075..1341077,1341180..1341182, 1341195..1341197,1341204..1341206,1341426..1341428, 1341462..1341464,1341474..1341476,1341483..1341485, 1341567..1341572,1341576..1341578,1341870..1341875, 1341885..1341887,1341906..1341908,1341951..1341953) /locus_tag="Alide2_1280" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29437" misc_feature order(1341063..1341065,1341075..1341077,1341180..1341185, 1341192..1341197,1341483..1341485,1341576..1341578, 1341582..1341584,1341654..1341656,1341660..1341665) /locus_tag="Alide2_1280" /note="allosteric effector site; other site" /db_xref="CDD:29437" misc_feature order(1341396..1341398,1341402..1341404,1341408..1341410, 1341507..1341509,1341528..1341536,1341684..1341686, 1341816..1341818,1341834..1341836,1341843..1341845) /locus_tag="Alide2_1280" /note="fructose-1,6-bisphosphate binding site; other site" /db_xref="CDD:29437" gene complement(1342148..1342858) /locus_tag="Alide2_1281" /db_xref="GeneID:10482309" CDS complement(1342148..1342858) /locus_tag="Alide2_1281" /EC_number="3.6.3.17" /inference="protein motif:PRIAM:3.6.3.17" /note="PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2610 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="monosaccharide-transporting ATPase" /protein_id="YP_004387201.1" /db_xref="GI:330823898" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482309" /translation="MQAMLEFKGISTHYGAICAVNNVSLHVNKGEIVSLIGSNGAGKT SLLMTLCGNPRASGGQVLFEGEDITNTPSHLIMRKGIAISPEGRRIFPALTVVENLQM GGFFQSKDAIAEGMEHVFRLFPRLKDRASQRAGTMSGGEQQMLAIGRALMSKPRLLLL DEPTLGLAPLIIAQIFEIIQEIRAQGVTVFLVEQNANRALSIADRGYVLETGRLVLED TGANLLTNADVRKAYLGA" misc_feature complement(1342151..1342858) /locus_tag="Alide2_1281" /note="leucine/isoleucine/valine transporter ATP-binding subunit; Provisional; Region: livF; PRK11614" /db_xref="CDD:183231" misc_feature complement(1342181..1342846) /locus_tag="Alide2_1281" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature complement(1342727..1342750) /locus_tag="Alide2_1281" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature complement(order(1342277..1342279,1342373..1342378, 1342601..1342603,1342724..1342732,1342736..1342741)) /locus_tag="Alide2_1281" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature complement(1342601..1342612) /locus_tag="Alide2_1281" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature complement(1342421..1342450) /locus_tag="Alide2_1281" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature complement(1342373..1342390) /locus_tag="Alide2_1281" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature complement(1342355..1342366) /locus_tag="Alide2_1281" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature complement(1342271..1342291) /locus_tag="Alide2_1281" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene complement(1342858..1343631) /locus_tag="Alide2_1282" /db_xref="GeneID:10482310" CDS complement(1342858..1343631) /locus_tag="Alide2_1282" /EC_number="3.6.3.25" /inference="protein motif:PRIAM:3.6.3.25" /note="PFAM: ABC transporter-like; KEGG: xtr:100485612 putative ribose/galactose/methyl galactoside import ATP-binding protein-like; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="sulfate-transporting ATPase" /protein_id="YP_004387202.1" /db_xref="GI:330823899" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482310" /translation="MAAGNSFLHVDGLSMRFGGLLAVDGIAFDVKEREIFAIIGPNGA GKTTVFNCISGFYRPTTGNIRLQGQDIAGQGSHSVALNGLVRTFQNVRLFKHMTVLEN LLVAQHRHLSTNLLSGLFKTRSYRESEQKALENALHWLDYMGLREFVNREAGNLAYGH QRRLEIARCMVTKPRVLMLDEPAAGLNPQEKKDLQGLIEKLRQEYGVAVLLIEHDMSL VMGVSERILVMEYGRPIALGTPDAIQKDERVIKAYLGEE" misc_feature complement(1342861..1343610) /locus_tag="Alide2_1282" /note="leucine/isoleucine/valine transporter ATP-binding subunit; Provisional; Region: livG; PRK11300" /db_xref="CDD:183080" misc_feature complement(1342885..1343610) /locus_tag="Alide2_1282" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature complement(1343491..1343514) /locus_tag="Alide2_1282" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature complement(order(1342990..1342992,1343089..1343094, 1343365..1343367,1343488..1343496,1343500..1343505)) /locus_tag="Alide2_1282" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature complement(1343365..1343376) /locus_tag="Alide2_1282" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature complement(1343137..1343166) /locus_tag="Alide2_1282" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature complement(1343089..1343106) /locus_tag="Alide2_1282" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature complement(1343071..1343082) /locus_tag="Alide2_1282" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature complement(1342984..1343004) /locus_tag="Alide2_1282" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene complement(1343631..1344890) /locus_tag="Alide2_1283" /db_xref="GeneID:10482311" CDS complement(1343631..1344890) /locus_tag="Alide2_1283" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal; KEGG: dia:Dtpsy_2608 leucine/isoleucine/valine transporter permease subunit" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387203.1" /db_xref="GI:330823900" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="InterPro:IPR021807" /db_xref="GeneID:10482311" /translation="MSAAISSSARPGWRQNLAHALTATVLTAVVVTPIFGLHLERAGV RTIIAQHWSNVAWACLLVFIAQMLRPLLAGRGVRLPWPKLPAIPARQRGVWITAALLL AVIWPFFAGRNAVDIATLAMIYVMLGLGLNVVVGFAGLLDLGFVGFYAVGAYTYALLF HWAGWSFWEALPLAGAASALFGFVLGFPVLRLRGDYLAIVTLGFGEIIRLLLVNLTDF TGGPDGISGLPKPSMFGLEMTRSPSAEGATTFHQFFGLEFNSMHMVIFLYLMALLLAV VTLFISNRLIRMPIGRAWEALREDEIACRSLGLNPMKIKLSAFTLGAMFAGFGGAFFA ARQGIVNPESFTFIESALILAIVVLGGMGSQLGVILAAILLTVLPEFAREFAEYRMLI FGLVMILMMVWRPQGLLPMQRHHVEVK" misc_feature complement(1343634..1344794) /locus_tag="Alide2_1283" /note="leucine/isoleucine/valine transporter permease subunit; Provisional; Region: livM; PRK11301" /db_xref="CDD:183081" misc_feature complement(1344573..1344794) /locus_tag="Alide2_1283" /note="Domain of unknown function (DUF3382); Region: DUF3382; pfam11862" /db_xref="CDD:152298" misc_feature complement(1343661..1344464) /locus_tag="Alide2_1283" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature complement(1343931..1343987) /locus_tag="Alide2_1283" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene complement(1344890..1345816) /locus_tag="Alide2_1284" /db_xref="GeneID:10482312" CDS complement(1344890..1345816) /locus_tag="Alide2_1284" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2607 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387204.1" /db_xref="GI:330823901" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10482312" /translation="MSEFLPQLLQQLFNGLSLGAIYALIAIGYTMVYGIIGMINFAHG EIYMIGAYAGLVTLAAIGTQSGLPVAVIIALMLLVAVLVTGVYGFVVEQVAYKPLRNG PRLVALISAIGMSIFLQNWVALGQGARDMAVPSLLPGALRFGDESGFEVFVPYTRVLI IVVTVVLMIALTLYIRHSRMGRASRACSQDMHMAGLLGIDVNRVISFTFILGAVLAAV GGVLIALAVGKLNPFIGFIVGVKAFTAAVLGGIGSIPGAMLGGVLLGVAETFAAAYIS SEYKDIVAFGLLVLILLFRPTGLLGKPEVEKV" misc_feature complement(1344917..1345774) /locus_tag="Alide2_1284" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature complement(1345187..1345243) /locus_tag="Alide2_1284" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene complement(1345937..1347055) /locus_tag="Alide2_1285" /db_xref="GeneID:10482313" CDS complement(1345937..1347055) /locus_tag="Alide2_1285" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_4331 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004387205.1" /db_xref="GI:330823902" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10482313" /translation="MSIPFRMHTVVAALGLASAALLSTAHAQVKIAMVVPATGPVTQY GDMVKEGVNTAVEQANAAGGINGKKIELVVVDDACEPKQGPVAANRVVNDKIHYVVGP VCSGAAIAAAPIYNNEGVVVVTPSATSPALTEGKNYHFIFRTIGRDDQQGPAAAKFII EKVKPKKVAVLHDKQSYGQGIAASVRDDLKKAGINVALFEGINAGDSDYSAVITKLKS AGVDFVYYGGYHPEMGLLLRQAGEQGLKVKMMGPEGVGNPEVNAIAGPAVEGMLLTLP ADFSTNPKNAAIVKAFKDKKRDAGGAFQMTAYAAAQVIIDSIKAVGDNPTKVADHMHK TTFETPLGAIGWNKNGDLKSFDFQIFEWHKDGSKSVAK" sig_peptide complement(1346972..1347055) /locus_tag="Alide2_1285" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.987 at residue 28" misc_feature complement(1345958..1346971) /locus_tag="Alide2_1285" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(1345970..1346968) /locus_tag="Alide2_1285" /note="Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342" /db_xref="CDD:107337" misc_feature complement(order(1346168..1346170,1346258..1346263, 1346270..1346272,1346279..1346281,1346342..1346344, 1346897..1346899,1346906..1346908,1346918..1346920, 1346945..1346947)) /locus_tag="Alide2_1285" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:107337" misc_feature complement(order(1346297..1346299,1346369..1346371, 1346525..1346527,1346675..1346680,1346741..1346749)) /locus_tag="Alide2_1285" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107337" gene complement(1347248..1347910) /locus_tag="Alide2_1286" /db_xref="GeneID:10482314" CDS complement(1347248..1347910) /locus_tag="Alide2_1286" /inference="protein motif:PFAM:PF00924" /note="PFAM: Mechanosensitive ion channel MscS; KEGG: ajs:Ajs_3252 small-conductance mechanosensitive channel-like protein" /codon_start=1 /transl_table=11 /product="MscS Mechanosensitive ion channel" /protein_id="YP_004387206.1" /db_xref="GI:330823903" /db_xref="InterPro:IPR006685" /db_xref="GeneID:10482314" /translation="MSPMLERLKTILPPWAHDWLDVIVPGMQIALIVLAALLLHYIVR RLIRRASDHYQFPHELLTPVNAVVRWLILGGAALLALERLGVSAAVLWTAFTGFATVG AVAFFAAWSVLSNLFCAFLILTVGPFRVGDHIELLDTAEKPGALGRVLDINLLYTTLE DATAPEPGTLLQIPNALIFQRVVRRWRAGMPVPPSKLHSEATPAAGAAESAPAPKAAS FP" misc_feature complement(<1347350..>1347580) /locus_tag="Alide2_1286" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" gene complement(1347907..1349454) /locus_tag="Alide2_1287" /db_xref="GeneID:10482315" CDS complement(1347907..1349454) /locus_tag="Alide2_1287" /EC_number="6.1.1.6" /inference="protein motif:TFAM:TIGR00499" /note="TIGRFAM: Lysyl-tRNA synthetase, class II; KEGG: ajs:Ajs_3250 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type" /codon_start=1 /transl_table=11 /product="lysyl-tRNA synthetase" /protein_id="YP_004387207.1" /db_xref="GI:330823904" /db_xref="GO:0000166" /db_xref="GO:0004824" /db_xref="GO:0005524" /db_xref="InterPro:IPR002313" /db_xref="InterPro:IPR004364" /db_xref="InterPro:IPR004365" /db_xref="GeneID:10482315" /translation="MSEHNHAPSLPQDENQLIAERREKLKALREGQAQGQSVAFPNDF KPQNHAASLQQRYGALDAEALEAQDVAVSVAGRMMLKRVMGKASFATLQDGSLGETGG RIQLYVTRDGVGEDVYADFKRWDLGDIVGAEGTLMKTKTGELSVKVTRLRLLTKSLRP MPDKFHGVADQEVKYRQRYVDLMTDEAARRRFVARSKAIGGIRAFMIEHGFLEVETPM LHPIPGGANARPFVTHHNALEQEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGIS VRHNPEFTMMEFYAAYWNYRDLMDFTEELVRDAALKATDTLQLTYGGRAVDLSQPFAR LTIREAIYQYTEAGAHVDDAAWLVSALKKLGMTEEKDRLSTRSLASLQVLYFEEEVED KLWQPTFIMEHPTEISPLARANDLRPEVTERFELYITGREFGNGFSELNDAEDQAARF NAQVAAKDSGDDEAMFFDHDFVRALEYGMPPTGGCGIGIDRLMMLLTDSPSIRDVILF PALRREQ" misc_feature complement(1347910..1349421) /locus_tag="Alide2_1287" /note="lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484" /db_xref="CDD:179044" misc_feature complement(1348909..1349241) /locus_tag="Alide2_1287" /note="LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-...; Region: LysRS_N; cd04322" /db_xref="CDD:58592" misc_feature complement(order(1348975..1348983,1348990..1348992, 1349068..1349070,1349170..1349175,1349224..1349229)) /locus_tag="Alide2_1287" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58592" misc_feature complement(order(1349020..1349022,1349038..1349040, 1349080..1349082,1349134..1349136,1349140..1349142, 1349188..1349190,1349206..1349211,1349215..1349217)) /locus_tag="Alide2_1287" /note="putative anticodon binding site; other site" /db_xref="CDD:58592" misc_feature complement(1347919..1348902) /locus_tag="Alide2_1287" /note="Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three...; Region: LysRS_core; cd00775" /db_xref="CDD:29820" misc_feature complement(1348792..1348806) /locus_tag="Alide2_1287" /note="motif 1; other site" /db_xref="CDD:29820" misc_feature complement(order(1347982..1347984,1348138..1348140, 1348150..1348152,1348159..1348161,1348180..1348182, 1348606..1348608,1348618..1348620,1348636..1348638, 1348642..1348644,1348708..1348710)) /locus_tag="Alide2_1287" /note="active site" /db_xref="CDD:29820" misc_feature complement(1348636..1348647) /locus_tag="Alide2_1287" /note="motif 2; other site" /db_xref="CDD:29820" misc_feature complement(1347982..1347993) /locus_tag="Alide2_1287" /note="motif 3; other site" /db_xref="CDD:29820" gene complement(1349494..1350120) /locus_tag="Alide2_1288" /db_xref="GeneID:10482316" CDS complement(1349494..1350120) /locus_tag="Alide2_1288" /inference="protein motif:PFAM:PF02397" /note="PFAM: Bacterial sugar transferase; KEGG: lch:Lcho_0300 sugar transferase" /codon_start=1 /transl_table=11 /product="sugar transferase" /protein_id="YP_004387208.1" /db_xref="GI:330823905" /db_xref="InterPro:IPR003362" /db_xref="GeneID:10482316" /translation="MGKRLFDIVFAALALLLLCPLLLAVALWVRLDSPGPALFRQQRV GRGGRPFHIYKFRTMRLDAEAAGPQITVGADARITRAGAWLRRAKVDELPQLLNVLRG DMSVVGPRPEVPRYVALYPSDVRETVLGVRPGITDLASIAFRDESSLLARSADPERTY VEQILPAKLLYAQRYVRTRSLWLDLRIIAWTILAVLGRPGAPRHSPKP" sig_peptide complement(1350046..1350120) /locus_tag="Alide2_1288" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.778 at residue 25" misc_feature complement(1349527..1350114) /locus_tag="Alide2_1288" /note="Bacterial sugar transferase; Region: Bac_transf; cl00939" /db_xref="CDD:193981" gene complement(1350127..1351299) /locus_tag="Alide2_1289" /db_xref="GeneID:10482317" CDS complement(1350127..1351299) /locus_tag="Alide2_1289" /EC_number="2.6.1.50" /inference="protein motif:PRIAM:2.6.1.50" /note="KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase" /codon_start=1 /transl_table=11 /product="glutamine--scyllo-inositol transaminase" /protein_id="YP_004387209.1" /db_xref="GI:330823906" /db_xref="InterPro:IPR000653" /db_xref="GeneID:10482317" /translation="MTMPDATPPFLPFARPDIGDAEIAAVTDALRSGWVTTGPKARAF EEAFTAYLGGDGLQSIAVNSATAGLHLALEALGIGPGDEVIAPTLTFTATVEVVRYLG ADPVLVDVDPVTLNIDPEAIRAAITPRTKAIMPVHYGGLACRMDAILSIAREHGLKVV EDAAHALPTTWQGALVGRLASDATVFSFYANKTITTGEGGMAVTRDPRLAERMRVMRL HGMSRDAFDRFTSKTPAWYYEVVAPGFKYNLTDIAAALGLVQLQRLPRFLERRQHLAR RYHAALAGLPLVLPADAPAGDVHAWHLYVVRLAAGARLSRDELIQALSERGIGTSVHY VPLHRHPYWRDRYRLAPEQFPHADTAYRAMLSLPLFTAMHDAEQDRVIAALHALLG" misc_feature complement(1350130..1351275) /locus_tag="Alide2_1289" /note="Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399" /db_xref="CDD:30748" misc_feature complement(1350142..1351236) /locus_tag="Alide2_1289" /note="3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616" /db_xref="CDD:99740" misc_feature complement(order(1350301..1350303,1350724..1350729, 1350739..1350741,1350805..1350807,1350814..1350816, 1351102..1351107)) /locus_tag="Alide2_1289" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99740" misc_feature complement(order(1350724..1350726,1350739..1350741, 1350805..1350807,1350814..1350816,1351030..1351032, 1351102..1351107)) /locus_tag="Alide2_1289" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99740" misc_feature complement(1350724..1350726) /locus_tag="Alide2_1289" /note="catalytic residue [active]" /db_xref="CDD:99740" gene complement(1351296..1351991) /locus_tag="Alide2_1290" /db_xref="GeneID:10482318" CDS complement(1351296..1351991) /locus_tag="Alide2_1290" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: mpt:Mpe_A0605 hypothetical protein" /codon_start=1 /transl_table=11 /product="type 11 methyltransferase" /protein_id="YP_004387210.1" /db_xref="GI:330823907" /db_xref="GO:0008168" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10482318" /translation="MNQPETRAVQARYARRDSEADALRYSLYANAAALQAQQERLRAM ARIWRAHGWSGLAGRPLLEVGCGSGGNLLDLLRLGATPRQLTGIELLPDRADAARTLL PEGVRILQGDACAAAIPDASQQAVLAFTVFSSLLDADYRQQFARQLWRWVMPGGGVLV YDFVIDNPHNHDVRGLPLAELRALFPGARLHSHKLTLAPPLARRLPAALITAAALLPA LRTHRLTWAVKPT" misc_feature complement(1351497..1351811) /locus_tag="Alide2_1290" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1351605..1351607,1351653..1351661, 1351722..1351727,1351782..1351802)) /locus_tag="Alide2_1290" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1351988..1353016) /locus_tag="Alide2_1291" /db_xref="GeneID:10482319" CDS complement(1351988..1353016) /locus_tag="Alide2_1291" /inference="protein motif:PFAM:PF00535" /note="PFAM: Glycosyl transferase, family 2; KEGG: bpt:Bpet1524 glycosyltransferase" /codon_start=1 /transl_table=11 /product="family 2 glycosyl transferase" /protein_id="YP_004387211.1" /db_xref="GI:330823908" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10482319" /translation="MTPTSVPRLLSVIAPCRNEAAFIDAFCGSVLRQQLPEGWRMEVL IADGQSDDGTRERLLERCAADPRLLLVDNPDRIVSTGLNACIAHARGEVIARLDIHTR FAPDYLARCIEALERSGADNVGGPWVAQGTGPMGEAIAAAFQCRWVVGGARSRDRSYE GEVDTVYLGCWRREAFARFGLFDEALVRNQDDEHNLRLRMAGGRIWQSGAIRSVYHPR NSLRHLLAQQRQYGYWRPFVVRKHGQPGSWRQLVPALFVAALALAALLLPWTPWPAAA LLALYGSYLALASVAAARAAGAWRLLWRLPAVIAAFHIGYGWGTWRGLWDVLRARAPS SRFARITR" misc_feature complement(1352267..1352986) /locus_tag="Alide2_1291" /note="ExoA is involved in the biosynthesis of succinoglycan; Region: Succinoglycan_BP_ExoA; cd02525" /db_xref="CDD:133016" misc_feature complement(order(1352717..1352719,1352966..1352968, 1352972..1352974)) /locus_tag="Alide2_1291" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133016" gene complement(1353013..1354062) /locus_tag="Alide2_1292" /db_xref="GeneID:10482320" CDS complement(1353013..1354062) /locus_tag="Alide2_1292" /inference="protein motif:PFAM:PF00534" /note="PFAM: Glycosyl transferase, group 1; KEGG: bpt:Bpet1525 glycosyltransferase" /codon_start=1 /transl_table=11 /product="group 1 glycosyl transferase" /protein_id="YP_004387212.1" /db_xref="GI:330823909" /db_xref="InterPro:IPR001296" /db_xref="GeneID:10482320" /translation="MQPHLCLLGDANSPHTRRWATEMRARGWRVSLVTARPEPLDGVE QRILPPVRRQADWLLRAGAARRHVHELAPDIVHAHYLTSYGYLAARCGRHPLAMTAWG SDLLVTPHRSPWMRWLTGWILRRADLVTGDSASLVEAARQYRPRAPVHEIHWGVDRAR FAPVPWGDKDGLQIVSLRAWEPNYHIGTLIDACALLRQRLPGAPLTLHLLGGGSLEPA LRARVQEQGLAQCVVFHGRLDDAGMAAVLARCKISVSVPESDATSVAMLESMACGLAV VASDLAANRQWIAPDLLVPAGDAHALAGVLQQLAEDDARMRGIGTRNAERIALDGDRK AQMDQVDRLYRQLLK" misc_feature complement(1353016..1354026) /locus_tag="Alide2_1292" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature complement(1353022..1354026) /locus_tag="Alide2_1292" /note="This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (; Region: GT1_wlbH_like; cd03798" /db_xref="CDD:99971" gene complement(1354064..1354666) /locus_tag="Alide2_1293" /db_xref="GeneID:10482321" CDS complement(1354064..1354666) /locus_tag="Alide2_1293" /inference="similar to AA sequence:KEGG:Bpet1526" /note="KEGG: bpt:Bpet1526 acetyltransferase" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004387213.1" /db_xref="GI:330823910" /db_xref="InterPro:IPR001451" /db_xref="GeneID:10482321" /translation="MRALLNRWRRWLWRLLFFRMVFGEQGRAGRRLPHTRIAPSTCIE GAQGLDLADHVFIGQFNFLDATAGLRIAEGVQVTNFVSIVTHSSHRSIRLLGRTYAGH AGDMPGYVRAPVEIGAYSFIGPHSVVEAGSRIGKGVVVCAHSRVRGAVPDFAIVAGSP ARAIGDVRTGDARLLAQHPELAAHYAAWAGELPRAEQEHG" misc_feature complement(1354175..1354525) /locus_tag="Alide2_1293" /note="Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-...; Region: LbH_MAT_like; cd04647" /db_xref="CDD:100053" misc_feature complement(order(1354190..1354192,1354238..1354240, 1354295..1354297,1354304..1354306,1354310..1354312, 1354373..1354375,1354397..1354402,1354421..1354423, 1354439..1354441,1354445..1354447,1354475..1354477, 1354499..1354501,1354505..1354507)) /locus_tag="Alide2_1293" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100053" misc_feature complement(order(1354187..1354189,1354193..1354198, 1354223..1354228,1354241..1354246,1354280..1354282, 1354295..1354300,1354304..1354306,1354373..1354375, 1354400..1354402,1354493..1354495,1354499..1354501)) /locus_tag="Alide2_1293" /note="active site" /db_xref="CDD:100053" misc_feature complement(order(1354400..1354402,1354493..1354495, 1354499..1354501)) /locus_tag="Alide2_1293" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100053" misc_feature complement(order(1354175..1354177,1354187..1354189, 1354193..1354198,1354202..1354204,1354223..1354228, 1354241..1354246,1354250..1354252,1354280..1354282, 1354295..1354300,1354304..1354306,1354373..1354375, 1354400..1354402)) /locus_tag="Alide2_1293" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100053" gene complement(1354650..1355882) /locus_tag="Alide2_1294" /db_xref="GeneID:10482322" CDS complement(1354650..1355882) /locus_tag="Alide2_1294" /inference="protein motif:PFAM:PF01943" /note="PFAM: Polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein" /protein_id="YP_004387214.1" /db_xref="GI:330823911" /db_xref="InterPro:IPR002797" /db_xref="GeneID:10482322" /translation="MTLGLLRATLTLLAGSVLAHALPLLLGPALTRLYAPADFGQYAL LWALATNLAVVACARYEFALPLEKSPRRAALLMALCARLLLAVTAASTLLALALLWGQ GQALAWLLPVGVLAIGATQWLTLWATRAQRFGLLSAARLVQQGGGALLQVLLGLLKTG PAGLLLGPIAAGLGAAWLLARPAPRGGWRRMWRQPLPRLKAMAARHRDFPLYNTPHAF IGALQDTLTLLLIAAWAGDAAAGLWALALRYLKAPATLLGGALSQALYPQLVHARSAD HARALVRRSMLALALLAAPLAAVLLLWGPGLFARAFGAQWEGAGALARGLALYIGLHF VASPLSVVTLAWRAQPWALRLSLAGQAAFFAGLCAGLAWDGLQGAAWGVSAAMAAYFL YYFRALAFWSDIPHESPA" sig_peptide complement(1355823..1355882) /locus_tag="Alide2_1294" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.570 at residue 20" gene complement(1355879..1357780) /locus_tag="Alide2_1295" /db_xref="GeneID:10482323" CDS complement(1355879..1357780) /locus_tag="Alide2_1295" /inference="protein motif:PFAM:PF02719" /note="PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein CapD" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein CapD" /protein_id="YP_004387215.1" /db_xref="GI:330823912" /db_xref="InterPro:IPR003869" /db_xref="GeneID:10482323" /translation="MLMQALTWPRSIKRLVVVTLDLGLGLLAMWLAFSLRLDTLHWPE GLQWLVYLLGPAMAFPVFVHMGLYRAIFRYNGIAALLTTGRAVTTYGALLLALLLLAK WEGVPRSVGILQPLILLLLIGTSRALGWFWLSGQTRNARHRLLIYGAGVAGAQTAAGL ASARQYTLRGFVDDDPRKVGSSINGARVHGASALPALVEREGITDVLLALPSISHERR RDIIGHLSELPVRIRTLPSLTDLASGRVSVTDFQDLDIVDLLGRAPVAPDQELLERNL RGAVVLVTGAGGSIGSELCRQILRAHPSRLLLVDHSEYALYGIHQELQAAVAAQQDGA AACCTLVPLLANVTDEAHMARICREHQPSSIYHAAAYKHVPMVEANAAEGIFNNVFGT LSVVRAAVEHGARHFVLISTDKAVRPTNVMGASKRIAELVLQAISACGRQPFGSARTP TRFSMVRFGNVLGSSGSVIPLFRRQIAAGGPITVTHPEVTRYFMTIPEAAQLVLQAGA MAEGGDLFLLDMGEPIRIVDLARRMVALSGLTVRSDAHPTGDIEIRFIGLRPGEKLYE ELLIGDNPLPTAHPRILRAHEEHAPWSDMQPRLEALRRAALAGDTPAIMALLRQMVPG YQPAGPASP" misc_feature complement(1355891..1357699) /locus_tag="Alide2_1295" /note="Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG1086" /db_xref="CDD:31283" misc_feature complement(1356026..1356949) /locus_tag="Alide2_1295" /note="UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs; Region: UDP_invert_4-6DH_SDR_e; cd05237" /db_xref="CDD:187548" misc_feature complement(order(1356386..1356391,1356398..1356409, 1356503..1356505,1356551..1356553,1356620..1356622, 1356665..1356667,1356671..1356679,1356740..1356748, 1356848..1356853,1356911..1356922,1356926..1356928)) /locus_tag="Alide2_1295" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187548" misc_feature complement(order(1356368..1356370,1356383..1356388, 1356623..1356625,1356632..1356634,1356641..1356643, 1356653..1356655,1356662..1356673,1356725..1356727, 1356734..1356736,1356743..1356754,1356818..1356820, 1356830..1356832,1356842..1356844,1356848..1356850)) /locus_tag="Alide2_1295" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187548" misc_feature complement(order(1356095..1356097,1356104..1356106, 1356203..1356205,1356308..1356310,1356314..1356316, 1356326..1356334,1356365..1356370,1356377..1356385, 1356401..1356406,1356515..1356517,1356539..1356547, 1356665..1356667)) /locus_tag="Alide2_1295" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187548" misc_feature complement(order(1356503..1356505,1356515..1356517, 1356545..1356547,1356617..1356619)) /locus_tag="Alide2_1295" /note="active site" /db_xref="CDD:187548" gene complement(1357817..1358452) /locus_tag="Alide2_1296" /db_xref="GeneID:10482324" CDS complement(1357817..1358452) /locus_tag="Alide2_1296" /inference="protein motif:PFAM:PF02190" /note="PFAM: Peptidase S16, lon N-terminal; KEGG: xtr:100498456 hypothetical protein LOC100498456" /codon_start=1 /transl_table=11 /product="peptidase S16 lon domain-containing protein" /protein_id="YP_004387216.1" /db_xref="GI:330823913" /db_xref="GO:0004176" /db_xref="InterPro:IPR003111" /db_xref="GeneID:10482324" /translation="MPQPLTLTSLPLFPLDTVLFPGGVLALRVFEVRYLDMVRKCRHA GAPFGVVALTAGHEVRRAGAPAEQFHDMGTLAAIEQMQAPQPGLITLQCRGAARFRIT HRSHLPHGLWVADVEQLPGDPHVPVPDDLQRTARVLAQVLASLHAREAGAGPHAVPTP EQLQDCGWVANRWCELLPLPADRKQRLMTLDNPLVRLELVGDMLERMGIFL" misc_feature complement(1357835..1358401) /locus_tag="Alide2_1296" /note="ATP-dependent protease La (LON) domain; Region: LON; pfam02190" /db_xref="CDD:190239" misc_feature complement(1357838..1358401) /locus_tag="Alide2_1296" /note="Found in ATP-dependent protease La (LON); Region: LON; cl01056" /db_xref="CDD:141077" gene 1358546..1359094 /locus_tag="Alide2_1297" /db_xref="GeneID:10482325" CDS 1358546..1359094 /locus_tag="Alide2_1297" /inference="protein motif:PFAM:PF02325" /note="PFAM: Uncharacterised protein family Ycf19; KEGG: dia:Dtpsy_2595 protein of unknown function YGGT" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387217.1" /db_xref="GI:330823914" /db_xref="InterPro:IPR003425" /db_xref="GeneID:10482325" /translation="MLFQILSFLLEVASGLLTGACLLRLYMQWQRVSFANPVGRLVFA LSDWLVLPLRKLVPAAGRWDLSSLVAAFLLQLVQYLLLWLLLGAGVGLAWLPWVAVFS LAHVAVSGLMGLLIVYAVLSWVQTRSALGDVIARLCEPLLRPVRRVLPLVGGIDLSPL VLLVLLQVLSIVLGHLQASVMM" misc_feature 1358573..>1358737 /locus_tag="Alide2_1297" /note="YGGT family; Region: YGGT; cl00508" /db_xref="CDD:193846" gene complement(1359171..1360043) /locus_tag="Alide2_1298" /db_xref="GeneID:10482326" CDS complement(1359171..1360043) /locus_tag="Alide2_1298" /EC_number="6.4.1.2" /inference="protein motif:TFAM:TIGR00515" /note="TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: ajs:Ajs_3241 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; PFAM: Carboxyl transferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, carboxyl transferase subunit beta" /protein_id="YP_004387218.1" /db_xref="GI:330823915" /db_xref="GO:0003989" /db_xref="InterPro:IPR000022" /db_xref="InterPro:IPR000438" /db_xref="GeneID:10482326" /translation="MSWLEKLLPAKIQQTNPTERRQMPEGLWVKCPSCDNVLYKTDLE HNQNVCPQCGHHHRIGARARLNAFLDGEGRYEIGQEVLPVDALKFKDSRKYPERLKEA LENTGETDALIVMGGAVKSINVVAACFEFDFMGGSMGSVVGERFVRGVETAIEQKVPF ICFTATGGARMQEGLLSLMQMAKTNAALTRLAKKGLPYISVLTDPTMGGVSAGFAFVG DIVIAEPKALIGFAGPRVIESTVRVTLPEGFQRAEFLQTKGAVDFICDRRELRQTVAQ CLSMLQRLPADAVA" misc_feature complement(1359174..1360043) /locus_tag="Alide2_1298" /note="acetyl-CoA carboxylase subunit beta; Validated; Region: PRK05654" /db_xref="CDD:180184" misc_feature complement(1359186..1360043) /locus_tag="Alide2_1298" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene complement(1360072..1360881) /locus_tag="Alide2_1299" /db_xref="GeneID:10482327" CDS complement(1360072..1360881) /locus_tag="Alide2_1299" /EC_number="4.2.1.20" /inference="protein motif:TFAM:TIGR00262" /note="TIGRFAM: Tryptophan synthase, alpha chain; KEGG: ajs:Ajs_3240 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain" /codon_start=1 /transl_table=11 /product="tryptophan synthase subunit alpha" /protein_id="YP_004387219.1" /db_xref="GI:330823916" /db_xref="GO:0004834" /db_xref="InterPro:IPR002028" /db_xref="GeneID:10482327" /translation="MSRIADTFAALQEKGRKALIPYVTAGFPFADITPALMHGMVEAG ADVIELGVPFSDPMADGPVIQKAGEKALSLGIGMPQVLEMVRSFRQRNQTTPVVLMGY ANPVERYDQRHGKGAFARDAGAAGVDGVLVVDYPPEECEQFAADLRAHGIDLIFLLAP TSTPERMQQVARVASGYVYYVSLKGVTGSGALDTAAVESMLPRIREHVKIPVGVGFGI RDAATAQAIGRVADAVVIGSRIIQLIEDQPHEKVVGITVDFLRGIRKALDA" misc_feature complement(1360078..1360836) /locus_tag="Alide2_1299" /note="tryptophan synthase; Region: PLN02591" /db_xref="CDD:178201" misc_feature complement(1360090..1360830) /locus_tag="Alide2_1299" /note="Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are...; Region: Tryptophan_synthase_alpha; cd04724" /db_xref="CDD:73386" misc_feature complement(order(1360168..1360173,1360231..1360236, 1360318..1360323,1360345..1360347,1360690..1360692, 1360702..1360704,1360735..1360737)) /locus_tag="Alide2_1299" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73386" misc_feature complement(order(1360321..1360323,1360576..1360578, 1360702..1360704,1360735..1360737)) /locus_tag="Alide2_1299" /note="active site" /db_xref="CDD:73386" misc_feature complement(order(1360576..1360578,1360702..1360704, 1360735..1360737)) /locus_tag="Alide2_1299" /note="catalytic residues [active]" /db_xref="CDD:73386" misc_feature complement(order(1360384..1360386,1360393..1360401, 1360405..1360407,1360465..1360467,1360474..1360476, 1360480..1360485,1360561..1360563,1360570..1360572, 1360684..1360689,1360696..1360698,1360705..1360707, 1360711..1360722)) /locus_tag="Alide2_1299" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:73386" gene complement(1360878..1362146) /locus_tag="Alide2_1300" /db_xref="GeneID:10482328" CDS complement(1360878..1362146) /locus_tag="Alide2_1300" /EC_number="4.2.1.20" /inference="protein motif:TFAM:TIGR00263" /note="TIGRFAM: Tryptophan synthase, beta chain; KEGG: ajs:Ajs_3239 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit" /codon_start=1 /transl_table=11 /product="tryptophan synthase subunit beta" /protein_id="YP_004387220.1" /db_xref="GI:330823917" /db_xref="GO:0004834" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR006654" /db_xref="GeneID:10482328" /translation="MFEYHQPDASGHFGPYGGSFASETLTHALTELREAYARYQHDPA FLAEFQYELAHFVGRPSPVYHAARMSREMGGAQIYLKREDLNHTGAHKINNVIGQAML ARRMGKPRIIAETGAGQHGVATATICARYGLQCVVYMGAEDVKRQSPNVYRMKLLGAT VVPVESGSRTLKDALNEAMRDWVANVDDTFYIIGTVAGPHPYPVMVRDFQSVIGKECL EQMPAMLAEQKIAAEQPDAVVACVGGGSNAMGIFHPYIPFENTRLIGVEAAGEGLDSG KHSASLQRGSSGVLHGNRTYILQDENGQITETHSISAGLDYPGVGPEHAWLQEIGRAE YVGITDKEALDAFHYLCRTEGIIPALESSHAVAHAMKLAKTMTPQQSILVNLSGRGDK DIGTVADLSGADFYDRPSMRGHTVKGGPAA" misc_feature complement(1360950..1362140) /locus_tag="Alide2_1300" /note="tryptophan synthase, beta chain; Region: PLN02618" /db_xref="CDD:178227" misc_feature complement(1360956..1362065) /locus_tag="Alide2_1300" /note="Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446" /db_xref="CDD:107207" misc_feature complement(order(1360986..1360988,1361064..1361066, 1361406..1361420,1361562..1361564,1361790..1361792, 1361871..1361876)) /locus_tag="Alide2_1300" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107207" misc_feature complement(1361871..1361873) /locus_tag="Alide2_1300" /note="catalytic residue [active]" /db_xref="CDD:107207" gene complement(1362147..1362863) /locus_tag="Alide2_1301" /db_xref="GeneID:10482329" CDS complement(1362147..1362863) /locus_tag="Alide2_1301" /EC_number="5.3.1.24" /inference="protein motif:PRIAM:5.3.1.24" /note="KEGG: ajs:Ajs_3238 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI)" /codon_start=1 /transl_table=11 /product="phosphoribosylanthranilate isomerase" /protein_id="YP_004387221.1" /db_xref="GI:330823918" /db_xref="InterPro:IPR001240" /db_xref="GeneID:10482329" /translation="MSSPSPIRTRIKICGLTREQDVDAAVAAGADAVGFVLYAKSPRA VSPERAAALARRLPPFTTPVLLFVNAQATEVIAASACVPGATVQFHGDETPEDCWAAS DQGRIPFLRAARIPLGEDAARFDLVEYAQAHSHARAILLDAHVEGYGGGGKAFNWSLL PPSVDCHLVLSGGLTPANVADGILQVRPRCRTLAVDVSSGVEADGPDGSPLKGVKDAG KIQRFIAAVRAADAAPASIS" misc_feature complement(1362192..1362833) /locus_tag="Alide2_1301" /note="Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric...; Region: PRAI; cd00405" /db_xref="CDD:73365" misc_feature complement(order(1362267..1362272,1362276..1362278, 1362438..1362440,1362594..1362596,1362600..1362602, 1362756..1362758,1362822..1362824,1362828..1362830)) /locus_tag="Alide2_1301" /note="active site" /db_xref="CDD:73365" gene complement(1362860..1363678) /locus_tag="Alide2_1302" /db_xref="GeneID:10482330" CDS complement(1362860..1363678) /locus_tag="Alide2_1302" /inference="protein motif:TFAM:TIGR00071" /note="KEGG: dia:Dtpsy_2590 tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase A" /protein_id="YP_004387222.1" /db_xref="GI:330823919" /db_xref="GO:0003723" /db_xref="GO:0009982" /db_xref="InterPro:IPR001406" /db_xref="InterPro:IPR020097" /db_xref="GeneID:10482330" /translation="MRVALGVSYNGQAYSGWQSQPSGNTVQDHLEAALGRFATQKVAT ICAGRTDAGVHGLMQVVHFDTGLQRAPFSWVRGTNTFLPPDIAVQWAQPVPDAFHARA CAVARRYAYVLLQSPVRPSVEAGRVGWVFHELDGQAMQDAVQHLLGEHDFSSFRASAC QAKSPVKTLHRIAITRRGPANGPSLHGCAPCYWRFEFEGNAFLHHMIRNIMGCIVAIG QGLYPPQWMRQVLDARSRDAAAPTFSPDGLYFLGPVYAPEWGLPTRTAAYDWLP" misc_feature complement(1362914..1363678) /locus_tag="Alide2_1302" /note="tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021" /db_xref="CDD:178798" misc_feature complement(1362914..1363666) /locus_tag="Alide2_1302" /note="PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1)...; Region: PseudoU_synth_EcTruA; cd02570" /db_xref="CDD:30020" misc_feature complement(order(1363412..1363435,1363442..1363444, 1363655..1363657)) /locus_tag="Alide2_1302" /note="dimerization interface 3.5A [polypeptide binding]; other site" /db_xref="CDD:30020" misc_feature complement(order(1363055..1363057,1363526..1363537)) /locus_tag="Alide2_1302" /note="active site" /db_xref="CDD:30020" gene complement(1363743..1366415) /locus_tag="Alide2_1303" /db_xref="GeneID:10482331" CDS complement(1363743..1366415) /locus_tag="Alide2_1303" /inference="protein motif:TFAM:TIGR03505" /note="TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: ajs:Ajs_3236 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="FimV N-terminal domain-containing protein" /protein_id="YP_004387223.1" /db_xref="GI:330823920" /db_xref="InterPro:IPR020011" /db_xref="InterPro:IPR020012" /db_xref="GeneID:10482331" /translation="MSMNTLLPTARPTQSFVAHMHRWKFSALATAAILSAGLYGTDAS ALALGRVNVQSALGEPLRAEIELPQITAAEAESLRVAPARPEVFRSQGLEYSPAAGNV QIQLHRRADGSMVLRLSSTRPINEPFVDMVIDATWSSGHVVRSYTMLFDPPATERAPA TATTAPQLTAPRAETAPAAPRATAPAPAPRAAAPAPAAPAARPAPTVTPAPSRPAVAA ASGSGDEVRVRPGDTAGRIANAHRPASVSLDQMLVAMAQANPDAFVQGNVNRLRAGTV LRMPSEADAQATPAVQARQIVAAQSRDFNEYRRRLASVAPRTQVAAAERSASGTVQAQ VDESKPAAASPDKLTLSKGGVQARKAEDQMARDKQADQDTARMAELSKNIAELNQIGG GATQAAAAAPGNAASAPGIAVPAPAALPTPVQTTASAEAPAGATDAAGAAASEPAAAP PPKPAPQPAPQPAVPEEPSILDSLMEDPLRAGGALALILALLGYGGYRAAQNRRNRAA TVDSSFEESRVAPDSFFGSSGGQRVDTASSDLSTGSSSMTYSPSQLDAGGDVDPVAEA DVYLAYGRDLQAEEILKEAMRHQPERVAIPAKLAEIYAKRQDRKALESAANDVFRLTN GTGPDWARVSDLGRTLDPENALYRPGGRPATAAGEQPGADSLPPPFPSTLNVAPPSAS GPDSVLPALDLDLDLDLDLHEAPAAPAPTPSAFAMAAAANEQAAHESAEAQPPETEAP APVLDPELPGAAQAPETAADAAEPAPEEEASATGPLPLDFPEDALSLMDSSIAPLTSR DAKAPAVEPLDFDLGDLSLDLTGPGGLTASQPANTPADEPLPDDPLATKLALAEEFNT IGDSEGARTLVEEVIAESSGELKARAQRLLATLS" misc_feature complement(<1365963..1366352) /locus_tag="Alide2_1303" /note="Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimV; COG3170" /db_xref="CDD:32983" misc_feature complement(<1365300..>1365752) /locus_tag="Alide2_1303" /note="Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimV; COG3170" /db_xref="CDD:32983" misc_feature complement(1365504..1365722) /locus_tag="Alide2_1303" /note="FimV N-terminal domain; Region: FimV_core; TIGR03505" /db_xref="CDD:132544" misc_feature complement(1364361..>1364741) /locus_tag="Alide2_1303" /note="Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimV; COG3170" /db_xref="CDD:32983" misc_feature complement(1363749..1363880) /locus_tag="Alide2_1303" /note="FimV C-terminal domain; Region: FimV_Cterm; TIGR03504" /db_xref="CDD:132543" gene complement(1366638..1367750) /locus_tag="Alide2_1304" /db_xref="GeneID:10482332" CDS complement(1366638..1367750) /locus_tag="Alide2_1304" /EC_number="1.2.1.11" /inference="protein motif:TFAM:TIGR01745" /note="SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, proteobacteria; KEGG: ctt:CtCNB1_1004 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="aspartate-semialdehyde dehydrogenase" /protein_id="YP_004387224.1" /db_xref="GI:330823921" /db_xref="GO:0004073" /db_xref="GO:0050661" /db_xref="InterPro:IPR000534" /db_xref="InterPro:IPR011534" /db_xref="InterPro:IPR012280" /db_xref="GeneID:10482332" /translation="MSKQLVGLVGWRGMVGSVLMDRMQAEGDFDLIEPVFFSTSNAGG KAPAMARTHTQLKDANDVAELAKCDIVITCQGGDYTKEVFPRIRAAGWKGHWIDAASA LRMEDDAVIVLDPVNDGLIKSRLAAGGRNWIGGNCTNSILLMGLAGLFKADLVEWVSS MTYQAASGGGANHMRELLKGMGVIYGSVAGELATPASAILEIDRKVAATIRQDVPTEF FGAPLAGGLIPWIDSQLPNGQSKEEWKGQAEVNKILGTPATIPVDGLCVRIGAMRCHS LALTLKLKRDLPLAEIESLIKGGNPWVKFVANDKALTLQELTPAAITGGLQVGVGRVR KLNMGPEYVSAFVIGDQLLWGAAEPLRRMLRILLGA" misc_feature complement(1366644..1367744) /locus_tag="Alide2_1304" /note="aspartate-semialdehyde dehydrogenase; Reviewed; Region: PRK06598" /db_xref="CDD:180636" misc_feature complement(1367400..1367735) /locus_tag="Alide2_1304" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1366689..1367315) /locus_tag="Alide2_1304" /note="Semialdehyde dehydrogenase, dimerisation domain; Region: Semialdhyde_dhC; pfam02774" /db_xref="CDD:145758" gene complement(1368020..1369090) /locus_tag="Alide2_1305" /db_xref="GeneID:10482333" CDS complement(1368020..1369090) /locus_tag="Alide2_1305" /EC_number="1.1.1.85" /inference="protein motif:TFAM:TIGR00169" /note="TIGRFAM: Isopropylmalate dehydrogenase; KEGG: dia:Dtpsy_2586 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="YP_004387225.1" /db_xref="GI:330823922" /db_xref="GO:0003862" /db_xref="InterPro:IPR001804" /db_xref="InterPro:IPR004429" /db_xref="GeneID:10482333" /translation="MKIAVLPGDGIGPEIVAEAVKVLEALDLKLEMETAPVGGAAYEV AGHPLPESTLGLAREADAILFGAVGDWKYDKLDRPLRPEQAILGLRKHLGLFANFRPA ICYEQLTHASSLKPELVAGLDILIIRELTGDIYFGQPRGRRTAPDGHFPGAEEAFDTM RYSRPEIERIARVAFEAARKRSKRVTSVDKANVLETFQLWKDVVTEVHKDYPDVQLDH MYVDNAAMQLVKAPKAFDVIVTGNMFGDILSDEASMLTGSIGMLPSASLNDKKQGLYE PSHGSAPDIAGKGVANPLATILSAAMMLRFSLGQEEAARRIEAAVQKVLAQGLRTPDI HSEGTTRVGTVQMGDAVVNALR" misc_feature complement(1368023..1369090) /locus_tag="Alide2_1305" /note="Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445" /db_xref="CDD:193821" misc_feature complement(1368032..1369069) /locus_tag="Alide2_1305" /note="isocitrate dehydrogenase; Validated; Region: PRK06451" /db_xref="CDD:180566" gene complement(1369165..1369815) /locus_tag="Alide2_1306" /db_xref="GeneID:10482334" CDS complement(1369165..1369815) /locus_tag="Alide2_1306" /inference="protein motif:TFAM:TIGR00171" /note="KEGG: dia:Dtpsy_2585 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase, small subunit" /protein_id="YP_004387226.1" /db_xref="GI:330823923" /db_xref="GO:0003861" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR004431" /db_xref="GeneID:10482334" /translation="MQKFTIHQGLVAPMDRENVDTDAIIPKQFLKSIKKTGFGPNLFD EWRYLDKGEPGVPESQRKPNPDFVLNQPRYKGASILLARKNFGCGSSREHAPWALDQY GFRAIIAPSFADIFFNNCFKNGLLPIVLPEATVDLLFNEVAAFPGYQLTIDLERQVVI RPQGEEIAFDVVPFRKYCLLNGFDDIGLTLRHADKIRAFEAERLATKPWLAHTMAS" misc_feature complement(1369354..1369776) /locus_tag="Alide2_1306" /note="Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-...; Region: IPMI_Swivel; cd01577" /db_xref="CDD:73275" misc_feature complement(1369540..1369548) /locus_tag="Alide2_1306" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73275" gene complement(1369839..1369964) /locus_tag="Alide2_1307" /db_xref="GeneID:10482335" CDS complement(1369839..1369964) /locus_tag="Alide2_1307" /inference="protein motif:PFAM:PF08085" /note="PFAM: Entericidin EcnAB; KEGG: dac:Daci_5236 entericidin EcnAB" /codon_start=1 /transl_table=11 /product="Entericidin EcnAB" /protein_id="YP_004387227.1" /db_xref="GI:330823924" /db_xref="InterPro:IPR012556" /db_xref="GeneID:10482335" /translation="MKPSFSVLLIGLALTLAACNTIKGIGQDVQSAGGAIERAAR" sig_peptide complement(1369908..1369964) /locus_tag="Alide2_1307" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.691 at residue 19" misc_feature complement(1369845..1369907) /locus_tag="Alide2_1307" /note="Entericidin EcnA/B family; Region: Entericidin; cl02322" /db_xref="CDD:194291" gene complement(1369988..1371409) /locus_tag="Alide2_1308" /db_xref="GeneID:10482336" CDS complement(1369988..1371409) /locus_tag="Alide2_1308" /inference="protein motif:TFAM:TIGR00170" /note="KEGG: ajs:Ajs_3229 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase, large subunit" /protein_id="YP_004387228.1" /db_xref="GI:330823925" /db_xref="GO:0003861" /db_xref="InterPro:IPR001030" /db_xref="InterPro:IPR004430" /db_xref="GeneID:10482336" /translation="MGRTLYDKIFDEHVVHTEEDGTAVLYIDRHLVHEVTSPQAFEGL REAGRKVWRVSSIVATADHNTPTTGWERGYDGIADPISKEQIVTLDKNIAESGAAAFF PFLSRRQGIVHVIGPENGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHVMATQ TLLAKKARNMLIKVNGKVAPGITAKDIVLAIIGRIGTAGGTGYTIEFAGEAIRDLSME GRMTVCNMAIEAGARAGLVAVDDKTINYVKGRPLAPTGVEWDQAVQYWKTLHSDADAQ WDAVVELNAAEIVPQVTWGTSPEMVLGVDATVPDPDKEKDPSKRGATERALTYMGLEP GKPIADIFVDKVFIGSCTNSRIEDMREAATVVKKLGQKVAKNVKLAMVVPGSGLVKEQ AEREGLDQIFKAAGFEWREPGCSMCLAMNADRLEPGERCASTSNRNFEGRQGAGGRTH LVSPAMAAAAAIHGHFVDIRKFA" misc_feature complement(1369991..1371409) /locus_tag="Alide2_1308" /note="3-isopropylmalate dehydratase large subunit; Reviewed; Region: PRK00402" /db_xref="CDD:179006" misc_feature complement(1370012..1371325) /locus_tag="Alide2_1308" /note="3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; Region: IPMI; cd01583" /db_xref="CDD:153133" misc_feature complement(order(1370084..1370086,1370099..1370101, 1370156..1370158,1371011..1371016,1371302..1371304, 1371311..1371313)) /locus_tag="Alide2_1308" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153133" misc_feature complement(order(1370102..1370104,1370156..1370161, 1370168..1370170,1370357..1370359,1371008..1371010)) /locus_tag="Alide2_1308" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153133" gene complement(1371430..1372368) /locus_tag="Alide2_1309" /db_xref="GeneID:10482337" CDS complement(1371430..1372368) /locus_tag="Alide2_1309" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2581 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387229.1" /db_xref="GI:330823926" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482337" /translation="MKSSERSFARRIDLTSLQLFVAVCELGSIGRAAEREFIAASAVS KRLSDLEAAVDTALLYRHSRGVTLTPAGESLLHHARAVLFGLERMQGELSEYAEGVRG HVRMHANISAIVQFLPEDLGQFARAHSQIKIDLQEHLSPDVLHAVHEGAADLGICNLG GGNGAGGADLQSRPYRSDHLVLVVPQTHALSARESIQFDEVLDWDIVGLHAGSSISLA MRQAAAQAGRPLRQRIQVTSLDAMCRMIDNGLGVGLLPDRAFALMRGVGQLAAVRLDE PWARRELRLVARDFDALPVTARLLVEHLAPTISPSP" misc_feature complement(1371433..1372335) /locus_tag="Alide2_1309" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1372150..1372329) /locus_tag="Alide2_1309" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1371457..1372062) /locus_tag="Alide2_1309" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(1371625..1371630,1371634..1371639, 1371655..1371672,1371958..1371978,1371982..1371984, 1371994..1371996,1372003..1372008,1372012..1372017)) /locus_tag="Alide2_1309" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene complement(1372557..1373921) /locus_tag="Alide2_1310" /db_xref="GeneID:10482338" CDS complement(1372557..1373921) /locus_tag="Alide2_1310" /inference="protein motif:PFAM:PF10996" /note="KEGG: dia:Dtpsy_2580 beta-lactamase domain protein; PFAM: Beta-Casp domain; RNA-metabolising metallo-beta-lactamase; Beta-lactamase-like; SMART: Beta-lactamase-like" /codon_start=1 /transl_table=11 /product="beta-Casp domain-containing protein" /protein_id="YP_004387230.1" /db_xref="GI:330823927" /db_xref="GO:0016787" /db_xref="InterPro:IPR001279" /db_xref="InterPro:IPR011108" /db_xref="InterPro:IPR022712" /db_xref="GeneID:10482338" /translation="MTVSLTFLGGAGTVTGSKYLVRHGGKALLVDCGLFQGYKLLRQR NWRPLPVEPHEIDAVLLTHAHLDHSGYLPLLAKGGFGGPVFCTSGTRDLCAILLPDSG HLQEEEAAYLNRHHLSKHEPALPLYTRLDAQHSLSLLRAQPARTPFEPLPGWRATFTR AGHILGAASILLEVGGRRILFSGDLGRPDDLLMCAPDAPPAADTVLVESTYGDRSHPP GSVLDELGPALARLAARGGVAVVPVFAVGRAQTVLHAIARLKARGDLPARLPVYLDSP MAVSTTELFEDHVGEHCLSHADLHAMARGTTLVHSVEESKALARLHGPRIILSASGMA TGGRVLHHLALHAGDHRNMIVLTGHQAGGTRGARIANGEKSIRILGRDVEIRAEVVQL ATASAHADGNQVLDWLRAMPAAPRRVYVVHGELPAADMLRQRIEYELHWPAEVPEHGD TVVL" misc_feature complement(1372560..1373912) /locus_tag="Alide2_1310" /note="Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]; Region: YSH1; COG1236" /db_xref="CDD:31429" misc_feature complement(1373295..1373891) /locus_tag="Alide2_1310" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" misc_feature complement(1372815..1373174) /locus_tag="Alide2_1310" /note="Beta-Casp domain; Region: Beta-Casp; pfam10996" /db_xref="CDD:192690" misc_feature complement(1372650..1372781) /locus_tag="Alide2_1310" /note="RNA-metabolising metallo-beta-lactamase; Region: RMMBL; pfam07521" /db_xref="CDD:191768" gene complement(1373962..1375110) /locus_tag="Alide2_1311" /db_xref="GeneID:10482339" CDS complement(1373962..1375110) /locus_tag="Alide2_1311" /inference="protein motif:PFAM:PF00067" /note="PFAM: Cytochrome P450; KEGG: ajs:Ajs_3226 cytochrome P450" /codon_start=1 /transl_table=11 /product="cytochrome P450" /protein_id="YP_004387231.1" /db_xref="GI:330823928" /db_xref="GO:0004497" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR001128" /db_xref="GeneID:10482339" /translation="MTTTPPQWDPQAPEVQRDQRAAYDQLRERCPLAHSESQHWSVLR HAEVMRVLDDHATFSSAVSAHPAVPNGYDQPEHTAYRRALDPFFAPERMARFEPVCRA LSGATVQEALALGGDLEITQEFALPFAVRVQSAFLGWPTLLQDELLGWLRRSHAATRS GDRVQTSAVAREFEDLVERVRQARRDAPPTQDVSSELMHTRVDGRLLDLRELASVLRN WTVGEVGTIAASIGILMHWLASHPDWQQRLREQPALLPTAIDEVLRIDGPLVSNRRIT TRATALGGCPLPAGSRLSVNWIAANRDPRVFGDPDAFRMDRDPGLNLLYGAGIHVCPG APLARLELRVLIEELLARTTRIVLAAGHAPARAVYPDAGYATLRMRLG" misc_feature complement(1374103..1375086) /locus_tag="Alide2_1311" /note="Cytochrome P450; Region: p450; cl12078" /db_xref="CDD:197442" gene complement(1375129..1376613) /locus_tag="Alide2_1312" /db_xref="GeneID:10482340" CDS complement(1375129..1376613) /locus_tag="Alide2_1312" /inference="protein motif:TFAM:TIGR00148" /note="KEGG: ajs:Ajs_3225 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related" /codon_start=1 /transl_table=11 /product="UbiD family decarboxylase" /protein_id="YP_004387232.1" /db_xref="GI:330823929" /db_xref="GO:0016831" /db_xref="InterPro:IPR002830" /db_xref="GeneID:10482340" /translation="MHYRDLRDFLAQLEAAGELRRIAAPVSPHLEMTALSDRVLRAGG PALLFENPTGHRMPVLANLFGTPARVARALGVAGLAEIRAFGEVLAQLKEPEPPRGMK DLWGRRDLVKTLWSMAPSTVRRPPCQQIVWEGGDVDLGRLPIQHCWPGDVAPLVTWGL TITRGPHKARQNLGIYRQQLLSKNELIMRWLAHRGGALDFAEHCRQNPGKPYPVAVAL GADPATLLGAVTPVPDTLSEYQFAGLLRGARTEVAPAIGVPLQVPAQAEIVLEGHIHP DAGHPSGWRHALEGPYGDHTGYYNECAEFPVFTVERITLREDAIYHSTYTGKPPDEPA MLGLALNELFVPLLQRAFPEIVDFYLPPEACSYRLAVVRIKKAYAGHARRVMMGVWSH LRQFLYTKFIVVVDDDIDARDWKEVIWAMTTRMDPVRDTMLIENTPIDYLDFASPVAG LGGKMGLDATNKWPGETQREWGRPMAMDADVRHRMDALADDLGL" misc_feature complement(1375132..1376613) /locus_tag="Alide2_1312" /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Region: UbiD; cl00311" /db_xref="CDD:185894" gene complement(1376669..1377253) /locus_tag="Alide2_1313" /db_xref="GeneID:10482341" CDS complement(1376669..1377253) /locus_tag="Alide2_1313" /inference="protein motif:TFAM:TIGR00421" /note="KEGG: dia:Dtpsy_2577 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein" /codon_start=1 /transl_table=11 /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase" /protein_id="YP_004387233.1" /db_xref="GI:330823930" /db_xref="GO:0016831" /db_xref="InterPro:IPR003382" /db_xref="InterPro:IPR004507" /db_xref="GeneID:10482341" /translation="MSTPKRIIVGISGASGAVYGARLLQALQGMEGVESHLVVSHAGW LNLRHELDMERAEVEALADHVHDLADVGASIASGSFAAHGMVVAPCSMRTLAAIAHGL ADNLLTRAADVVLKERRRLVLLTRESPLHLVHLRNMATVTELGAICCPPMPAFYQRPT TIGEIVDHSVARALDLLGLDNDLAPRWQGLPKNS" sig_peptide complement(1377191..1377253) /locus_tag="Alide2_1313" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.617) with cleavage site probability 0.404 at residue 21" misc_feature complement(1376690..1377244) /locus_tag="Alide2_1313" /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional; Region: PRK06029" /db_xref="CDD:180355" misc_feature complement(1376918..1377241) /locus_tag="Alide2_1313" /note="Flavoprotein; Region: Flavoprotein; cl08021" /db_xref="CDD:195652" gene complement(1377250..1377657) /locus_tag="Alide2_1314" /db_xref="GeneID:10482342" CDS complement(1377250..1377657) /locus_tag="Alide2_1314" /inference="protein motif:PFAM:PF08859" /note="PFAM: DGC; KEGG: ajs:Ajs_3223 hypothetical protein" /codon_start=1 /transl_table=11 /product="DGC domain-containing protein" /protein_id="YP_004387234.1" /db_xref="GI:330823931" /db_xref="InterPro:IPR014958" /db_xref="GeneID:10482342" /translation="MSASATDPAPEEDQPLVYSCSGCSSAAQLANHIAVQMDRRGMAE MSCIAGVGGDVPKLVRLARSGRPIIALDGCPLVCVRSSLARHRIAPARHYQLHEYGVK KRNHQDFDAAQAAEVLGRIEADLRDHPLRGGRA" misc_feature complement(1377289..1377615) /locus_tag="Alide2_1314" /note="DGC domain; Region: DGC; cl01742" /db_xref="CDD:154564" gene complement(1377654..1378172) /locus_tag="Alide2_1315" /db_xref="GeneID:10482343" CDS complement(1377654..1378172) /locus_tag="Alide2_1315" /inference="protein motif:PFAM:PF02036" /note="PFAM: SCP2 sterol-binding domain; KEGG: ajs:Ajs_3222 hypothetical protein" /codon_start=1 /transl_table=11 /product="Sterol-binding domain-containing protein" /protein_id="YP_004387235.1" /db_xref="GI:330823932" /db_xref="GO:0032934" /db_xref="InterPro:IPR003033" /db_xref="GeneID:10482343" /translation="MNATPPAPFTLPRPVGAVLARLPAYPGSMLLVAAINFALARQLP QDVKDILQGKRLAIRVRDARLGFDFSWNGQRFAPSAPQANPDLAISANAQDFLLLAQR RQDPDTLFFNRRLVMEGDTELGLVVKNALDALELPVLAPSHWSPRAVLERKAPHLLRQ LPPLPAFLKPRP" misc_feature complement(<1377762..1378139) /locus_tag="Alide2_1315" /note="SCP-2 sterol transfer family; Region: SCP2; cl01225" /db_xref="CDD:194071" gene complement(1378192..1379115) /locus_tag="Alide2_1316" /db_xref="GeneID:10482344" CDS complement(1378192..1379115) /locus_tag="Alide2_1316" /inference="protein motif:PFAM:PF01136" /note="PFAM: Peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32" /codon_start=1 /transl_table=11 /product="peptidase U32" /protein_id="YP_004387236.1" /db_xref="GI:330823933" /db_xref="GO:0008233" /db_xref="InterPro:IPR001539" /db_xref="GeneID:10482344" /translation="MMDKPMMKLALGPLQYYWPRETVFEFYQAIGQTPVDIVYLGEAV CSRRHELRQSDWMDIARMLQGAGKEAVMSTMVLLESTSDVADMHKIARDEEFPVEAND MGAVHNLAGKRPFVAGPQLNIFNADTLAWMASLGARRWVMPLEMRQSDLAVLLKDKPA GLETEVFAYGRMPLAFSARCFTARHYNLPKDDCGFRCIEHPDGQLLQTREKEPFLVIN GIQTQSARVHNLVLDIPALRAAGADILRLSPQSQHMDKIIAAFDAARRAERPDPATLA NMRPFMPEASCNGYWHGKPGLDLITPAPAIA" misc_feature complement(1378210..1379097) /locus_tag="Alide2_1316" /note="Peptidase family U32; Region: Peptidase_U32; cl03113" /db_xref="CDD:194534" gene complement(1379121..1380242) /locus_tag="Alide2_1317" /db_xref="GeneID:10482345" CDS complement(1379121..1380242) /locus_tag="Alide2_1317" /inference="protein motif:PFAM:PF01136" /note="PFAM: Peptidase U32; KEGG: ajs:Ajs_3220 peptidase U32" /codon_start=1 /transl_table=11 /product="peptidase U32" /protein_id="YP_004387237.1" /db_xref="GI:330823934" /db_xref="GO:0008233" /db_xref="InterPro:IPR001539" /db_xref="GeneID:10482345" /translation="MVCGLRGNARTRTAPEPAVNALASPSSASTIDTAASAAPAAPEL VCPAGSLPALKAAIDGGADCVYLGLRDATNARNFAGLNFDEAAIQNGIAYAHDRGRKV LMALNTYPQATNPAPWRSALDRASAWGVDAIILADPGLMRYASERHPNLRLHLSVQGS ATNHDAINLYHAQFNIQRAVLPRVLSLEQVRQLVNRTSVEIEVFGFGSLCVMVEGRCA LSSYATGESPNTHGVCSPAKFVRWQETPQGLESRLNGVLIDRYGQGENAGYPTLCKGR FDVGDESNYYALEEPTSLNTLELLPQLVKMGVRAFKIEGRQRSPAYVAQVTKVWREAI DHCMAQGHLYAPKTAWMASLDQVAEGQQHTLGAYHRPWK" misc_feature complement(1379124..1379891) /locus_tag="Alide2_1317" /note="Peptidase family U32; Region: Peptidase_U32; cl03113" /db_xref="CDD:194534" gene 1380441..1381811 /locus_tag="Alide2_1318" /db_xref="GeneID:10482346" CDS 1380441..1381811 /locus_tag="Alide2_1318" /EC_number="4.1.99.1" /inference="protein motif:PRIAM:4.1.99.1" /note="KEGG: rfr:Rfer_2475 tryptophanase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase" /codon_start=1 /transl_table=11 /product="Tryptophanase" /protein_id="YP_004387238.1" /db_xref="GI:330823935" /db_xref="InterPro:IPR001597" /db_xref="GeneID:10482346" /translation="MPKTLIEPFRIKSVEPIRMTTRAERERLLEEAHLNIFKLRAEDV LIDWLTDSGTGAMSARQWGAIMEGDESYAGARSFFRLEKVIQDITGMAHFVPTHQGRA AEKVLFTAVCRKGDLVPNNCHFDTTRGNLEYMGVEAVDVVIAEGLQPATIHPFKGNID LDRAEALLKKEGGRIPFGMLTMTNNTGGGQPVSMANIRAYSALLKQYGKPFIMDVCRF AENAMFIKMRERGYENTPVREIAREMFSYADGATMSAKKDGMVNIGGFIVLRSDEWLD EVRNDLIMMEGFPTYGGMAGRDLEALAVGLEEGLQEDYLRYRLRTAEYLGERLEAAGV GFVKPTGGHAVYIDARTVLPDMPVQHYPAWALCNALYLEGGIRGVEIGSVMFGKRLED GTETYHSMELVRLAFPRRMYTQSHFDYAAEVIAEVKAKAAGIRGVRITRQPRFLRHFT CECAWV" misc_feature 1380441..1381808 /locus_tag="Alide2_1318" /note="tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional; Region: tnaA; PRK13238" /db_xref="CDD:183910" misc_feature 1380537..1381796 /locus_tag="Alide2_1318" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature order(1380738..1380743,1380750..1380752,1380981..1380983, 1381080..1381082,1381089..1381091,1381200..1381202, 1381209..1381211) /locus_tag="Alide2_1318" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature 1381209..1381211 /locus_tag="Alide2_1318" /note="catalytic residue [active]" /db_xref="CDD:99742" gene complement(1381885..1382550) /locus_tag="Alide2_1319" /db_xref="GeneID:10482347" CDS complement(1381885..1382550) /locus_tag="Alide2_1319" /inference="protein motif:TFAM:TIGR02595" /note="KEGG: maq:Maqu_1010 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial" /codon_start=1 /transl_table=11 /product="PEP motif putative anchor domain-containing protein" /protein_id="YP_004387239.1" /db_xref="GI:330823936" /db_xref="InterPro:IPR011449" /db_xref="InterPro:IPR013424" /db_xref="GeneID:10482347" /translation="MKTIAALVLALASVGAQADVVITNTFNGTGIQPLGEPDTTTYGE VFTTPDAINTVLDSFSLILQSLNASTSQLYAGVATWVNGGAGTSLFTSSVFSGNFTDW TEVVIGTGGLSLTPGQQYVAFFSASGLFDGSNALVQVGLSDDANTLGMSWDNANGGSP LHPNWNGCQACSYQLAGTMEFSNPGNQVPEPGSMALLGLGLLGAAAARRRSPAKARVP EQV" sig_peptide complement(1382494..1382550) /locus_tag="Alide2_1319" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 19" gene complement(1382765..1383898) /locus_tag="Alide2_1320" /db_xref="GeneID:10482348" CDS complement(1382765..1383898) /locus_tag="Alide2_1320" /inference="protein motif:TFAM:TIGR02349" /note="TIGRFAM: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich domain; Heat shock protein DnaJ, N-terminal; KEGG: dia:Dtpsy_2572 chaperone protein DnaJ; SMART: Heat shock protein DnaJ, N-terminal" /codon_start=1 /transl_table=11 /product="chaperone protein DnaJ" /protein_id="YP_004387240.1" /db_xref="GI:330823937" /db_xref="GO:0005524" /db_xref="GO:0051082" /db_xref="InterPro:IPR001305" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR002939" /db_xref="InterPro:IPR012724" /db_xref="GeneID:10482348" /translation="MSKRDFYEVLGVPKNASDDELKKAYRKLAMKHHPDRNQGDAAKP AEEKFKEAKEAYEILSDPQKRAAYDQYGHAGVDPNMRGGMGGAEGFGGFAEAFGDIFG DMFGGGRGGRGGRQVYRGNDLSYAMEITLEEAAKGKDAQIRIPSWESCDTCHGSGAKP GTSAKTCGTCNGAGAVQMRQGFFSVQQTCPHCRGTGKIIPEPCTACHGQGRIKRQKTL EVKIPAGIDDGMRIRSSGNGEPGTNGGPPGDLYIEIRVRKHDIFERDGDDLHCQVPVS FITAALGGEIEVPTLSGKAAIDIPEGTQAGKQFRLRGKGIKGVRASYPGDLYCHIVVE TPVKLTEHQRKLLRELDESLKKGGGKHSPSTESWTDRLKSFFS" misc_feature complement(1382768..1383898) /locus_tag="Alide2_1320" /note="chaperone protein DnaJ; Provisional; Region: PRK10767" /db_xref="CDD:182712" misc_feature complement(<1383779..1383886) /locus_tag="Alide2_1320" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cd06257" /db_xref="CDD:99751" misc_feature complement(1383269..1383451) /locus_tag="Alide2_1320" /note="DnaJ central domain; Region: DnaJ_CXXCXGXG; cl14908" /db_xref="CDD:196869" misc_feature complement(1382861..1383097) /locus_tag="Alide2_1320" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" gene complement(1383994..1385937) /locus_tag="Alide2_1321" /db_xref="GeneID:10482349" CDS complement(1383994..1385937) /locus_tag="Alide2_1321" /inference="protein motif:TFAM:TIGR02350" /note="KEGG: dia:Dtpsy_2571 molecular chaperone DnaK; TIGRFAM: Chaperone DnaK; PFAM: Heat shock protein 70" /codon_start=1 /transl_table=11 /product="chaperone protein DnaK" /protein_id="YP_004387241.1" /db_xref="GI:330823938" /db_xref="GO:0005524" /db_xref="GO:0051082" /db_xref="InterPro:IPR012725" /db_xref="InterPro:IPR013126" /db_xref="GeneID:10482349" /translation="MGKIIGIDLGTTNSCVAIMEGNTTRVIENSEGARTTPSIIAYQE DGEILVGASAKRQAVTNPKNTIYAAKRLIGRKFEEKEVQKDIDLMPFEIVKADNGDAW VQVRGQKLAPPQISAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRI AGLDVKRIINEPTAAALAFGLDKQDKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFE VLATNGDTFLGGEDFDQRIIDYIIGEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSN SAQTDINLPYITADASGPKHLNIKLTRAKLESLVDELIERTIAPCRTAIKDAGISVSD INDVILVGGMTRMPKVQEKVKEFFGKEPRKDVNPDEAVAVGAAIQGQVLSGDRKDVLL LDVTPLSLGIETLGGVMTKMITKNTTIPTKFAQTFSTAEDNQPAVTIKVFQGEREIAS ANKLLGEFNLEGIPPASRGTPQIEVSFDIDANGILHVGAKDKGTGKENKITIKANSGL SEEEIQKMVKDAELNAADDKKKLELVQARNQGEAAVHTVSKSLAEHGDKLDAGEKEKI EAAVKDLEAALKGEDKAAIEEKTTALMAASQKLGEKMYADAQAAQQGAGADAAQASSA GTSAGAAQDDNVVDAEVKEVKKG" misc_feature complement(1384000..1385937) /locus_tag="Alide2_1321" /note="molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290" /db_xref="CDD:178963" gene complement(1386030..1386572) /locus_tag="Alide2_1322" /db_xref="GeneID:10482350" CDS complement(1386030..1386572) /locus_tag="Alide2_1322" /inference="protein motif:PFAM:PF01025" /note="PFAM: GrpE nucleotide exchange factor; KEGG: dia:Dtpsy_2570 heat shock protein GrpE" /codon_start=1 /transl_table=11 /product="GrpE protein" /protein_id="YP_004387242.1" /db_xref="GI:330823939" /db_xref="GO:0000774" /db_xref="GO:0042803" /db_xref="GO:0051087" /db_xref="InterPro:IPR000740" /db_xref="GeneID:10482350" /translation="MSDTQNQNPAPTPEEIEAALAANAADELARLQAELAELKAKSAE LADQFLRAKAEAENARRRAEEEVSKARKFGIESFAESLLPVCDSLDAALSIESATAEQ LREGSDATLRQLVGALERNKVVVINPASGAKFDPHQHQAISMVPADQEANTIVSVLQK GYLIADRVLRPALVTVAASK" misc_feature complement(1386045..1386374) /locus_tag="Alide2_1322" /note="GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding...; Region: GrpE; cd00446" /db_xref="CDD:73207" misc_feature complement(order(1386210..1386212,1386243..1386245, 1386252..1386254,1386297..1386299,1386309..1386311, 1386330..1386332,1386339..1386341,1386351..1386353)) /locus_tag="Alide2_1322" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73207" misc_feature complement(order(1386060..1386062,1386072..1386074, 1386099..1386101,1386144..1386158,1386165..1386167)) /locus_tag="Alide2_1322" /note="hsp70 (ATPase domain) interactions [polypeptide binding]; other site" /db_xref="CDD:73207" gene 1386808..1387182 /locus_tag="Alide2_1323" /db_xref="GeneID:10482351" CDS 1386808..1387182 /locus_tag="Alide2_1323" /inference="protein motif:TFAM:TIGR00166" /note="KEGG: dia:Dtpsy_2569 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S6" /protein_id="YP_004387243.1" /db_xref="GI:330823940" /db_xref="GO:0003735" /db_xref="GO:0019843" /db_xref="InterPro:IPR000529" /db_xref="GeneID:10482351" /translation="MRHYEIILLIHPDQSEQVPAMLERYKGMITAGGGQVHRVEDWGR RQLAYLINKLAKAHYLCLNIEADQAVMAELEHAFKFNDAVLRHLTVQKKKAETGPSSM MKTVEREEARKASQAEFAATER" misc_feature 1386808..1387128 /locus_tag="Alide2_1323" /note="Ribosomal protein S6; Region: Ribosomal_S6; cl00414" /db_xref="CDD:193808" gene 1387205..1387495 /locus_tag="Alide2_1324" /db_xref="GeneID:10482352" CDS 1387205..1387495 /locus_tag="Alide2_1324" /inference="protein motif:PFAM:PF00436" /note="PFAM: Primosome PriB/single-strand DNA-binding; KEGG: dia:Dtpsy_2568 putative primosomal replication protein" /codon_start=1 /transl_table=11 /product="single-strand binding protein/Primosomal replication protein n" /protein_id="YP_004387244.1" /db_xref="GI:330823941" /db_xref="GO:0003697" /db_xref="InterPro:IPR000424" /db_xref="GeneID:10482352" /translation="MNNHCALTACIAEAQPLRYTPAGLPALDLRLEHESLQHEAGAER QVKASVKAVAFGSLAERLARQALGSLWTFRGFLATGRGGKGLVFHIQDIQQD" misc_feature 1387205..1387486 /locus_tag="Alide2_1324" /note="Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold; Region: RPA_2b-aaRSs_OBF_like; cl09930" /db_xref="CDD:195928" gene 1387514..1387795 /locus_tag="Alide2_1325" /db_xref="GeneID:10482353" CDS 1387514..1387795 /locus_tag="Alide2_1325" /inference="protein motif:HAMAP:MF_00270" /note="TIGRFAM: Ribosomal protein S18; HAMAP: Ribosomal protein S18; KEGG: aav:Aave_1230 30S ribosomal protein S18; PFAM: Ribosomal protein S18" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S18" /protein_id="YP_004387245.1" /db_xref="GI:330823942" /db_xref="InterPro:IPR001648" /db_xref="GeneID:10482353" /translation="MATFKKFNKDKRPKRNTQSLLFKRKRFCRFTVAGVEEIDYKDVD TLRDFIAENGKIIPARLTGTRAIYQRQLNTAIKRARFLALVPYSDQHKI" misc_feature 1387547..1387783 /locus_tag="Alide2_1325" /note="Ribosomal protein S18; Region: Ribosomal_S18; cl00373" /db_xref="CDD:193792" gene 1387810..1388262 /locus_tag="Alide2_1326" /db_xref="GeneID:10482354" CDS 1387810..1388262 /locus_tag="Alide2_1326" /inference="protein motif:TFAM:TIGR00158" /note="KEGG: dia:Dtpsy_2566 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L9" /protein_id="YP_004387246.1" /db_xref="GI:330823943" /db_xref="GO:0003735" /db_xref="InterPro:IPR020069" /db_xref="InterPro:IPR020070" /db_xref="InterPro:IPR020594" /db_xref="GeneID:10482354" /translation="MQVILLDKVVNLGSLGEIVKVKDGYARNFLIPSGRARRATEAAK AEFEARRAELEKAAAEKLAAAQAQGEKLAGSAVKLTQKAGVDGRLFGSVTNGDIAEEL NKQGYDLVKSQIRLPNGPIKTVGDNTITVALHTDVVVEVTVSVYGETA" misc_feature 1387810..>1387911 /locus_tag="Alide2_1326" /note="Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281" /db_xref="CDD:189922" misc_feature 1388029..>1388184 /locus_tag="Alide2_1326" /note="Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948" /db_xref="CDD:146531" gene 1388384..1389862 /locus_tag="Alide2_1327" /db_xref="GeneID:10482355" CDS 1388384..1389862 /locus_tag="Alide2_1327" /inference="protein motif:TFAM:TIGR00665" /note="TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: dia:Dtpsy_2565 replicative DNA helicase; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="replicative DNA helicase" /protein_id="YP_004387247.1" /db_xref="GI:330823944" /db_xref="GO:0003677" /db_xref="GO:0003678" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR007692" /db_xref="InterPro:IPR007693" /db_xref="InterPro:IPR007694" /db_xref="GeneID:10482355" /translation="MTGIPAAASIPRLPSLESHSPMSAVLPDLIDGYAAAPPDREVAQ LRVPPHSIEAESSVLGGLLLDNMAWDRVGDLLVDGDFYRHEHQQIYSAIGALINASKP ADVITVYEHLQGLGKAEETGGLAYLNSLAQYVPSASNIRRYAEIVRERAILRKLVTAS DEIATNAFNPQGRPVERILDEAEQKIFAIGEEGSRMKQGFQSLDSLVIDLLDRVQEMA DNPMDVTGVPTGFMDLDRMTSGLQAGDLVVLAARPSMGKTSFAVNIAEHVALNEGLPV AIFSMEMGAAQLAVRIVGSIGRVNQGNLRTGKLSDEEWPRLTEAIERLRTVSLHIDET PGLTPSELRANARRLARQCGKLGLIVVDYLQLMSGSGSSSSDNRATELGEISRGLKML AKELQCPVIALSQLNRSVEQRTDKRPMMSDLRESGAIEQDADIIMFIYRDDYYNKDSK EPNIAEVIIGKQRNGPTGTVKLFFQKNQTRFENLAMGAGDDY" misc_feature 1388522..1389838 /locus_tag="Alide2_1327" /note="replicative DNA helicase; Region: DnaB; TIGR00665" /db_xref="CDD:188070" misc_feature 1388522..1388830 /locus_tag="Alide2_1327" /note="DnaB-like helicase N terminal domain; Region: DnaB; pfam00772" /db_xref="CDD:189711" misc_feature 1389080..1389811 /locus_tag="Alide2_1327" /note="DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984" /db_xref="CDD:29985" misc_feature 1389137..1389157 /locus_tag="Alide2_1327" /note="Walker A motif; other site" /db_xref="CDD:29985" misc_feature order(1389152..1389157,1389467..1389469,1389596..1389598, 1389704..1389706,1389770..1389772,1389803..1389805) /locus_tag="Alide2_1327" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29985" misc_feature 1389458..1389469 /locus_tag="Alide2_1327" /note="Walker B motif; other site" /db_xref="CDD:29985" misc_feature order(1389482..1389487,1389512..1389520,1389593..1389619, 1389701..1389706,1389740..1389745) /locus_tag="Alide2_1327" /note="DNA binding loops [nucleotide binding]" /db_xref="CDD:29985" gene 1389933..1391465 /locus_tag="Alide2_1328" /db_xref="GeneID:10482356" CDS 1389933..1391465 /locus_tag="Alide2_1328" /EC_number="1.2.1.31" /inference="protein motif:PRIAM:1.2.1.31" /note="KEGG: bpd:BURPS668_A2080 putative piperideine-6-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase domain" /codon_start=1 /transl_table=11 /product="L-aminoadipate-semialdehyde dehydrogenase" /protein_id="YP_004387248.1" /db_xref="GI:330823945" /db_xref="InterPro:IPR015590" /db_xref="GeneID:10482356" /translation="MTDSHTCLQQVLQALDLDLRAHEGTDLTIRAPRDGVVLASLASH TPEQAQAVVECAHRAYLDWRSVPAPVRGELVRRLGGLLRRHKAALGELVSLEAGKIAS EGQGEVQEMIDICDFAVGLSRQLHGLTIASERPGHRMMETWHPMGVVGIISAFNFPVA VWSWNAALALVCGNAIVWKPSEKTPLAAIACQHLLQRAIAEFEQERPGTVPEGLSQLL IGGRDVGAVLAASTRVAVLSATGSVRMGRQVAVKVAERLGRAILELGGNNAMIVTPTA DLELAARAITFAAVGTAGQRCTTLRRLIVHASVADALLARLERIYRSIAVGDPLQAGT LVGPLIDRAAFDAMQRALEQARAEGGQVLGGERVREDLGAHAWYVRPALVHMPRQSAV MERETFAPILYVVRYGGGTDEAIALQNAVPQGLSSAIFTASLGDAERFMSAAGSDCGI ANVNIGTSGAEIGGAFGGEKETGGGRESGSDAWKGYMRRATNTINYSGALPLAQGVRF DV" misc_feature 1389996..1391423 /locus_tag="Alide2_1328" /note="NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B; Region: ALDH_F7_AASADH; cd07130" /db_xref="CDD:143448" misc_feature 1390026..1391315 /locus_tag="Alide2_1328" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature order(1390113..1390115,1390131..1390133,1390140..1390142, 1390158..1390160,1390179..1390181,1390296..1390301, 1390305..1390307,1390311..1390313,1390317..1390319, 1390323..1390334,1390353..1390358,1390362..1390364, 1390671..1390673,1390680..1390685,1390692..1390694, 1390707..1390712,1390791..1390793,1390899..1390901, 1390935..1390937,1391166..1391168,1391235..1391237, 1391253..1391258,1391268..1391270,1391277..1391279, 1391283..1391294,1391310..1391315,1391325..1391327, 1391337..1391339,1391358..1391360,1391370..1391375, 1391382..1391384,1391394..1391411,1391415..1391420) /locus_tag="Alide2_1328" /note="tetrameric interface [polypeptide binding]; other site" /db_xref="CDD:143448" misc_feature order(1390389..1390400,1390467..1390469,1390473..1390478, 1390605..1390610,1390647..1390658,1390665..1390667, 1390674..1390676,1390719..1390727,1390821..1390823, 1391118..1391120,1391328..1391330) /locus_tag="Alide2_1328" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143448" misc_feature order(1390398..1390400,1390719..1390721,1390812..1390814, 1390821..1390823) /locus_tag="Alide2_1328" /note="catalytic residues [active]" /db_xref="CDD:143448" gene complement(1391537..1393276) /locus_tag="Alide2_1329" /db_xref="GeneID:10482357" CDS complement(1391537..1393276) /locus_tag="Alide2_1329" /inference="protein motif:PFAM:PF02562" /note="KEGG: dia:Dtpsy_2563 PhoH family protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc" /codon_start=1 /transl_table=11 /product="PhoH family protein" /protein_id="YP_004387249.1" /db_xref="GI:330823946" /db_xref="GO:0005524" /db_xref="InterPro:IPR003714" /db_xref="InterPro:IPR006596" /db_xref="GeneID:10482357" /translation="MPLPPAPTKRAALLKPEAYLLTAPQEEAQESAAAETAPPPRKRA KARAGGVTTAAPAAAKAAEVPGLPAKAAAATQARGQPAQDRPAHDAAPAGASNVTPIR TAAAVAPRKRRATGPKKMFVLDTNVLLHDPTSLFRFEEHDIFLPMIVLEELDAHKKGM TEVARNGRQASRTLDALAAAHGADDMAHGLRLDATGQRAATGSLFFQTAPLSYQLPSS LPQGKADNQILGVVEALRKLHAPREVVLVSKDINMRVKARALGLVAEDYQNDKALEDG DLLYTGSLALPPDFWTKAGRNVESWQSGAHMYYRIGGPVVSQLMINQFVYFEAPGEPS LYARVTEIRDKTAVLETLKDYGSAKNAVWGVNTRNREQNFAMNLLMDPDVDFVTLTGT AGTGKTLMALASGLTQVLDERRYTEIIMTRATVSVGEDIGFLPGTEEEKMGPWMGALD DNLEFLAKGDGGNAGEWGRAATNELIRSRIKIKSMNFMRGRTFLNKYVIIDEAQNLTP KQMKTLITRAGPGTKIICMGNLAQIDTPYLTEGSSGLTYAVDRFKGWPHSGHILLARG ERSRLADFASEVL" misc_feature complement(1391540..1392928) /locus_tag="Alide2_1329" /note="NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]; Region: COG1875" /db_xref="CDD:32059" misc_feature complement(1392464..1392922) /locus_tag="Alide2_1329" /note="PIN domain of bacterial Smg6-like homologs with PhoH-like ATPase domains; Region: PIN_PhoHL-ATPase; cd09883" /db_xref="CDD:189053" misc_feature complement(order(1392527..1392529,1392602..1392604, 1392821..1392823,1392905..1392907)) /locus_tag="Alide2_1329" /note="putative active site [active]" /db_xref="CDD:189053" misc_feature complement(1391561..1392175) /locus_tag="Alide2_1329" /note="PhoH-like protein; Region: PhoH; cl12134" /db_xref="CDD:196351" gene complement(1393433..1393921) /locus_tag="Alide2_1330" /db_xref="GeneID:10482358" CDS complement(1393433..1393921) /locus_tag="Alide2_1330" /inference="protein motif:PFAM:PF00578" /note="PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: dia:Dtpsy_2562 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen" /protein_id="YP_004387250.1" /db_xref="GI:330823947" /db_xref="GO:0016209" /db_xref="GO:0016491" /db_xref="InterPro:IPR000866" /db_xref="GeneID:10482358" /translation="MAIVVNKPLPEFEANATGGIKVSNVSHQGQILILYFYPKDNTPG CTTEAMQFRDKFKDFEKAGAVVFGVSRDNMKSHDDFKEKLELPFELIADTEEKMCHMF GVVKNKIMYGKKVKGIERSTFLVNPEGILVQEWRGLKVPGHVDEVLKAVKTIKAPVKK AA" misc_feature complement(1393475..1393903) /locus_tag="Alide2_1330" /note="Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by...; Region: PRX_BCP; cd03017" /db_xref="CDD:48566" misc_feature complement(order(1393562..1393564,1393787..1393789, 1393796..1393798)) /locus_tag="Alide2_1330" /note="catalytic triad [active]" /db_xref="CDD:48566" gene complement(1394099..1394788) /locus_tag="Alide2_1331" /db_xref="GeneID:10482359" CDS complement(1394099..1394788) /locus_tag="Alide2_1331" /inference="similar to AA sequence:KEGG:Ajs_1106" /note="KEGG: ajs:Ajs_1106 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387251.1" /db_xref="GI:330823948" /db_xref="GeneID:10482359" /translation="MTPSNTPVVYGTEDVLISLCNSVTRVLSIATQGPVHYSGMVQRI TKTCLKPDIGCFVLFDGGFSGLVIINFSAAAAMEIYERYMLSMGMSESDLAGSFTADE VGNVMGELMNQVVGDFTGKVRRELQTHITQNQPKMLVINQQVVLSVDANLDQPEARRV SFYTASNNIFYLELAIDRTQFVKLCDFEPQDAPDPDALMAEAAAAPAAAAPAPSATDD DTQALLKSLGM" misc_feature complement(1394219..1394776) /locus_tag="Alide2_1331" /note="Protein of unknown function (DUF3334); Region: DUF3334; pfam11813" /db_xref="CDD:152249" gene 1395046..1395633 /locus_tag="Alide2_1332" /db_xref="GeneID:10482360" CDS 1395046..1395633 /locus_tag="Alide2_1332" /inference="protein motif:PFAM:PF00033" /note="PFAM: Cytochrome b/b6, N-terminal; KEGG: dia:Dtpsy_1026 cytochrome b561" /codon_start=1 /transl_table=11 /product="cytochrome b/b6 domain-containing protein" /protein_id="YP_004387252.1" /db_xref="GI:330823949" /db_xref="GO:0009055" /db_xref="GO:0016491" /db_xref="InterPro:IPR005797" /db_xref="GeneID:10482360" /translation="MSSVITRPAARYGATAIALHWVLGLAIVAMLCMGWYMAGLPFSP QRLKLYNWHKWAGVAILALSVLRLVARLIRRPPPLPADVQSSMPRWQRLAHHGVHHLL YALFFIVPLVGWAYSSAAGFPIVFLGLVPLPDFVSPSPALADALKPWHALTAYALAAL VALHVAAVVKHQFIDRDGLMARMLPGWGRCAAERA" misc_feature 1395058..1395603 /locus_tag="Alide2_1332" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene 1395630..1396250 /locus_tag="Alide2_1333" /db_xref="GeneID:10482361" CDS 1395630..1396250 /locus_tag="Alide2_1333" /inference="protein motif:PFAM:PF04264" /note="KEGG: dia:Dtpsy_1027 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like" /codon_start=1 /transl_table=11 /product="YceI family protein" /protein_id="YP_004387253.1" /db_xref="GI:330823950" /db_xref="InterPro:IPR007372" /db_xref="GeneID:10482361" /translation="MTCFRHYRTEHSTVTVSTLTRRAGLVLATAAALAGGPALAQQRL VSEQSEIAFVSKQMGVPVEGKFKKFDAQVAFDPAKLATSKVAFTVDTGSATLGVRETD AELPKAVWFNVPKFPQATFQSSAIKAVGAGKYEVAGKLSIKGASQDVVVPVTLTQSGA TTTAAGSFVIKRLAFKIGENEWADTSMVADDVQVKFKLAFAGVPKL" sig_peptide 1395630..1395752 /locus_tag="Alide2_1333" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 41" misc_feature 1395774..1396232 /locus_tag="Alide2_1333" /note="YceI-like domain; Region: YceI; cl01001" /db_xref="CDD:194004" gene 1396305..1396880 /locus_tag="Alide2_1334" /db_xref="GeneID:10482362" CDS 1396305..1396880 /locus_tag="Alide2_1334" /inference="protein motif:PFAM:PF04264" /note="KEGG: dia:Dtpsy_1028 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like" /codon_start=1 /transl_table=11 /product="YceI family protein" /protein_id="YP_004387254.1" /db_xref="GI:330823951" /db_xref="InterPro:IPR007372" /db_xref="GeneID:10482362" /translation="MRSTLLALAAAAALSAGAVHAEPATYAVDPTHTFATFEISHFGA SVNRGRFDKKEGVVQFDKAGKAGKVELTLQIDSLTTGTLPFDKHLKSAEIFDVAQFPT ARFVGDKFTFEGDKVTAVSGNLTIKGKTQPVTFKANQFACYDSPMLKREVCGGDFEAT IDRTAFGVDYGVQYGFPKNVRIVAQIEAIKQ" sig_peptide 1396305..1396370 /locus_tag="Alide2_1334" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" misc_feature 1396365..1396877 /locus_tag="Alide2_1334" /note="YceI-like domain; Region: YceI; cl01001" /db_xref="CDD:194004" gene complement(1396950..1399259) /locus_tag="Alide2_1335" /db_xref="GeneID:10482363" CDS complement(1396950..1399259) /locus_tag="Alide2_1335" /EC_number="1.1.1.40" /inference="protein motif:PRIAM:1.1.1.40" /note="PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: ajs:Ajs_1112 malic enzyme; SMART: Malic enzyme, NAD-binding" /codon_start=1 /transl_table=11 /product="malate dehydrogenase" /protein_id="YP_004387255.1" /db_xref="GI:330823952" /db_xref="InterPro:IPR002505" /db_xref="InterPro:IPR012301" /db_xref="InterPro:IPR012302" /db_xref="GeneID:10482363" /translation="MTSPLSAAEQALREAALEYHRSPTKGKVSVAPTKPLSNQRDLSL AYSPGVAYPCLDIQADPTKAFDYTSRGNLVGVITNGTAVLGLGDIGPLAGKPVMEGKG CLFKKFAGVDVFDIELDARDPDKIIEIVASLEPTLGGINLEDIKAPECFYIERELSKR MNIPVFHDDQHGTAIISSAALLNGLELVGKQIDKVKVAVSGAGAAAIACVDVMVGLGV KREHIFMVDSKGVIYEGRPGGMDESKARYAQKTDARTLADVVHGADVFLGCSAPGVLT AEMVKTMADKPIILALANPEPEIRPELAKAVRPDCIIATGRSDYPNQVNNVLCFPYIF RGALDCGATKITEAMKLACVRQIAALAKENISEEVAAAYAGKELAFGPDYLIPTPFDS RLILKIAPAVAQAAAESGVATRPVADLEVYRNSLTRFVYQTGMLMRPVINAAKAQPDA HKRVAYADGEDERALRAAQIAIDDRIARPILIGRPAVIAARIAKAGLRMQPGKDVEIC DPSDDPRFRQYWEAYHQLMKRNGATPEMAKAAVRRSNTIIAALMVRLGDADAMICGLV GTYETHLERIHNILGHAADAKQYAALNAVMTPHNGTLFIADTYVNEDPTAEELADIAW AAVQEVQRFGLPPKVAFLSHSSFGSSKRSSARKMRAARDLFVARHPDIECDGELHGDA ALEPRIRANYLQDSTLTGAANLLICPNLDSANILYNVLKTTTSGGVTVGPILMGTAAT AYILTPASTVRRVLNMTALAVVSSATRRQ" misc_feature complement(1396956..1399205) /locus_tag="Alide2_1335" /note="malic enzyme; Reviewed; Region: PRK12862" /db_xref="CDD:183799" misc_feature complement(1398789..1399187) /locus_tag="Alide2_1335" /note="Malic enzyme, N-terminal domain; Region: malic; pfam00390" /db_xref="CDD:144108" misc_feature complement(1398066..1398752) /locus_tag="Alide2_1335" /note="NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311" /db_xref="CDD:133453" misc_feature complement(order(1398282..1398284,1398288..1398290, 1398312..1398314,1398378..1398386,1398438..1398440, 1398450..1398455,1398576..1398581,1398645..1398656)) /locus_tag="Alide2_1335" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133453" misc_feature complement(1396977..1397957) /locus_tag="Alide2_1335" /note="Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl00390" /db_xref="CDD:193798" gene complement(1399397..1400884) /locus_tag="Alide2_1336" /db_xref="GeneID:10482364" CDS complement(1399397..1400884) /locus_tag="Alide2_1336" /inference="protein motif:TFAM:TIGR03173" /note="KEGG: dac:Daci_2107 xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease" /codon_start=1 /transl_table=11 /product="xanthine permease" /protein_id="YP_004387256.1" /db_xref="GI:330823953" /db_xref="GO:0005215" /db_xref="InterPro:IPR006042" /db_xref="InterPro:IPR006043" /db_xref="InterPro:IPR017588" /db_xref="GeneID:10482364" /translation="MSTNVHPVDEMLPMGRLTALGLQHVLVMYAGAVAVPLIVGRALN LTPDQVTKLISADLFCCGLVTLIQALGATQWFGIRLPVMMGVTFAAVAPMVSMAQATS GQAGAGLIFGAVIGAGVISILIAPLVSRMLRFFPPVVTGTIIAVIGISLMRVGINWIF GNPVGPTAPSVVNPEYTKWLSEAQAMAGAPGSSLPPVPHGLKLMPTVPNPKYADLSGV GISALVLVSILLIARFAKGFIANISVLLGIVIGAVVAAAMGLMTFEKVGKAPWLDIVL PMEIATPIFDPILILTMTLVMIVVMIESTGMFLALGEMTDRHISPEDLKRGLRTDGLG TLIGGIFNTFPYTSFSQNVGLVAVTGVKSRFVCVAGGVILIVLGVLPKMGALVESLPT VVLGGAGLVMFGMVAATGIRILSAVDFKTNRSNAMIVAVSIGVGMIPLVAPQFRQWMP HAIHPLIESGILLSSIAAVLLNVFFNGANGDTSAAVEAARQAEAH" misc_feature complement(1399556..1400827) /locus_tag="Alide2_1336" /note="Permease family; Region: Xan_ur_permease; pfam00860" /db_xref="CDD:189745" misc_feature complement(1399457..1400824) /locus_tag="Alide2_1336" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" gene 1401235..1402710 /locus_tag="Alide2_1337" /db_xref="GeneID:10482365" CDS 1401235..1402710 /locus_tag="Alide2_1337" /inference="protein motif:PFAM:PF00015" /note="KEGG: dia:Dtpsy_2395 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_004387257.1" /db_xref="GI:330823954" /db_xref="GO:0004871" /db_xref="InterPro:IPR004089" /db_xref="GeneID:10482365" /translation="MILALLVVVTGIAMVKVERINGALRANSEEHVQVQRYAINFRGS AHDRSIAVRDVVLGSTSAERQKEIATIESLAAFYAASAGPLEKFVARPGAEPEMARLY ADIRDIEAQAVATTRAIVAQAEAGDAAARETLWQQAKPQYVQWLAAINRLIDFEEARI QAENRTALEQAGSFLTVQASLAAVVGKVRQASNAVITGSQEIAGGNAGLLQRTEEQAS NLQQAAASMEQMTASVKNNADSARQATQLAASASEAAHEGGAVVGQVVSTMHEITASS NRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAEAARE IKALIGSSVSKVEEGSRLVGDAGATMTDIVTQAQHVAELIAQISNATVEQTEGIAQVG GVVTHLDRATQQNAALVEQSAAAADALQQQAVSVFKLGSDAVAQAQVQPAAQPRPAVA RPLPAAVKAQARPLAPRATPARLPEPGRGGQETSDAEWESF" misc_feature 1402024..1402449 /locus_tag="Alide2_1337" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 1403088..1403837 /locus_tag="Alide2_1338" /pseudo /db_xref="GeneID:10482366" gene complement(1403899..1405152) /locus_tag="Alide2_1339" /db_xref="GeneID:10482367" CDS complement(1403899..1405152) /locus_tag="Alide2_1339" /inference="protein motif:PFAM:PF07687" /note="PFAM: Peptidase M20, dimerisation; Peptidase M20; KEGG: dia:Dtpsy_1035 peptidase dimerisation domain protein" /codon_start=1 /transl_table=11 /product="peptidase dimerization domain-containing protein" /protein_id="YP_004387258.1" /db_xref="GI:330823955" /db_xref="GO:0005515" /db_xref="GO:0016787" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR011650" /db_xref="GeneID:10482367" /translation="MSIYQRLDAWIDQHFDEQVQFLQALVRVPTDTPPGNNAPHAERT AELIQGYGFDAEKHAVPEADVKAYGMQSITNLIVRRPYGQGGRTVALNAHGDVVPPGE GWTHDPYGGEIADGAMYGRATAVSKSDFSTFTFAVRALEAVARPAKGSIELHFTYDEE FGGLLGPGWLLEQGLTKPDLMIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAVPHTGV DALQGAVAIMNALYAENTRYLQVTSRVPGIKHPYLNIGRIEGGTNTNVIPGKVVLKLD RRMIPEENPAEVEAGIRAVIAQAVERFNAERGYQGGDAVRVDIRRLLLANAMTPLAGN KPLVDAIQQHGEAVFGARPPAVGTPLYTDVRLYVERGIPGVIYGAGPRTVLESHAKRA DERIVLEDLRRATKVVARTLHDLLA" misc_feature complement(1403917..1405122) /locus_tag="Alide2_1339" /note="succinyl-diaminopimelate desuccinylase; Reviewed; Region: PRK08651" /db_xref="CDD:181522" misc_feature complement(1403902..1405113) /locus_tag="Alide2_1339" /note="M20 Zn-peptidases include exopeptidases; Region: M20_like; cd02697" /db_xref="CDD:193494" misc_feature complement(order(1404007..1404009,1404673..1404678, 1404766..1404768,1404871..1404873)) /locus_tag="Alide2_1339" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:193494" gene complement(1405149..1406924) /locus_tag="Alide2_1340" /db_xref="GeneID:10482368" CDS complement(1405149..1406924) /locus_tag="Alide2_1340" /EC_number="3.5.1.87" /inference="protein motif:TFAM:TIGR01879" /note="TIGRFAM: Amidase, hydantoinase/carbamoylase; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; KEGG: ajs:Ajs_1115 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Peptidase M20" /codon_start=1 /transl_table=11 /product="hydantoinase/carbamoylase family amidase" /protein_id="YP_004387259.1" /db_xref="GI:330823956" /db_xref="GO:0016787" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010158" /db_xref="InterPro:IPR017580" /db_xref="InterPro:IPR018020" /db_xref="GeneID:10482368" /translation="MTLTLEQLNAAPAAEAAALLDGLYEHSPWITEAALAQRPFRSMA HIKHALVQVLAQAAPEQQLGLIRAHPELAGKAMVSKTLTAESTNEQNKAGLTDCTPEE FARIQQLNADYNARFGFPFILAVRGPRGTGLTKKEIIDTFARRLSNHPDFERAEALRN IHRIAEIRLNDKFGYEPVLGNDVWDWQEKLSVHTDPGYAELGQLTVTYLTDAHRACAQ RISHWMRDCGFDEVEIDAVGNVVGRYRPAAESGKYLMTGSHYDTVRNGGKYDGRLGIF VPMACVRELHRQHRRLPFGIEVVAFAEEEGQRYKATFLGSGALIGDFKQEWLDQKDAD GITMREAMEHAGLCIADIPRLRRDAAQYLGFVEVHIEQGPVLNELDIPLGVVTSINGG VRYVCEMTGMASHAGTTPMDRRRDAALGVAELALYMEQRAAQDGDSVATIGMLQVPNG SINVVPGRCQFSMDMRAPTDPQRDAMVADVLARLEEIAQRRGLQYKAELSMKAAAAPS APEWQQRWEAAVQALGVPLYRMPSGAGHDAMKLHEVMPQAMLFVRGLNGGISHNPLES STADDMQLAVDAFAHVLNQLAQETA" misc_feature complement(1405152..1406924) /locus_tag="Alide2_1340" /note="putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional; Region: PRK13590" /db_xref="CDD:184168" misc_feature complement(1406412..1406903) /locus_tag="Alide2_1340" /note="OHCU decarboxylase; Region: OHCU_decarbox; cl01251" /db_xref="CDD:194081" misc_feature complement(1405176..1406378) /locus_tag="Alide2_1340" /note="M20 Peptidase beta-alanine synthase, an amidohydrolase; Region: M20_bAS; cd03884" /db_xref="CDD:193505" misc_feature complement(order(1405242..1405244,1405320..1405325, 1405527..1405529,1405743..1405745,1405749..1405751, 1405809..1405811,1405818..1405820,1405989..1405991, 1406010..1406015,1406112..1406117,1406148..1406150)) /locus_tag="Alide2_1340" /note="active site" /db_xref="CDD:193505" misc_feature complement(order(1405242..1405244,1405818..1405820, 1406010..1406015,1406115..1406117,1406148..1406150)) /locus_tag="Alide2_1340" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193505" misc_feature complement(order(1405326..1405328,1405527..1405529, 1405533..1405535,1405557..1405568,1405572..1405577, 1405587..1405610,1405626..1405631,1405635..1405640, 1405644..1405652,1405656..1405664,1405668..1405673, 1405683..1405685,1405692..1405694,1405698..1405712, 1405743..1405745,1405788..1405793,1405800..1405811)) /locus_tag="Alide2_1340" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:193505" gene complement(1406989..1407948) /locus_tag="Alide2_1341" /db_xref="GeneID:10482369" CDS complement(1406989..1407948) /locus_tag="Alide2_1341" /EC_number="3.5.1.41" /inference="protein motif:TFAM:TIGR03212" /note="TIGRFAM: Putative urate catabolism protein; KEGG: dia:Dtpsy_1037 urate catabolism protein; PFAM: Polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="urate catabolism protein" /protein_id="YP_004387260.1" /db_xref="GI:330823957" /db_xref="InterPro:IPR002509" /db_xref="InterPro:IPR017625" /db_xref="GeneID:10482369" /translation="MTYDACSPYPRDLIGYGRTPPHPAWPGQARVAVQFVLNYEEGGE NCVLHGDAASEQFLSEMFNPAAYPARHMSMEGIYEYGSRAGVWRLLREFERRGLPLTV FGVATALQRHREVAQAFHELGHEVACHGLKWIHYQDVPEEVERAHMAQCMEIFGELYG HGGDHGLGWYTGRDSPNTHRLVADDGRFAYDSDYYGDDLPFWMKVQKTGGGTHHQLVV PYTLDVNDMRFALPQGYSHADPFFQYMKDTFDVLYAEGDPAGDDAPKMMSIGMHCRLL GRPGRITALQRFLDHVQRHDRVWVARRIDIARHWAQRFPQPAV" misc_feature complement(1407004..1407924) /locus_tag="Alide2_1341" /note="putative urate catabolism protein; Region: uraD_N-term-dom; TIGR03212" /db_xref="CDD:188298" misc_feature complement(1407391..1407717) /locus_tag="Alide2_1341" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene complement(1407945..1408622) /locus_tag="Alide2_1342" /db_xref="GeneID:10482370" CDS complement(1407945..1408622) /locus_tag="Alide2_1342" /inference="protein motif:PFAM:PF07729" /note="KEGG: dia:Dtpsy_1038 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004387261.1" /db_xref="GI:330823958" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10482370" /translation="METSTTGFIVESLTRAIVEHRLLPGTKLAEQKLADHFGVSRTLV RQALFQLSQNRLIRLEPARGAFVATPSVEEARQVFAVRRMLEAEMVRAFMAQKTPAKI RALKAHIAAEQKAMEREDVGQRTELLADFHVRIAELMGNEVLAQLLGELLSRCALITL MYQSTTAAAHSHEEHEAIVAALAGSDTAAAVLLMQQHLDNVEAGLTFDRDLPTNDLSM ALSAIAP" misc_feature complement(1408419..1408598) /locus_tag="Alide2_1342" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(1408428..1408439,1408443..1408448, 1408476..1408478,1408485..1408490,1408494..1408508, 1408530..1408535)) /locus_tag="Alide2_1342" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(1408023..1408394) /locus_tag="Alide2_1342" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene complement(1408677..1409591) /locus_tag="Alide2_1343" /db_xref="GeneID:10482371" CDS complement(1408677..1409591) /locus_tag="Alide2_1343" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1039 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387262.1" /db_xref="GI:330823959" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482371" /translation="MSPPSNAPSEMAFFSLLARLGSLSGAAREQGVSTAAASKRLAQM ESRLGVRLVSRTTRRLHLTAEGETYLRHARRILAEIDAMEQLVADMQSTPQGLLRVNA TLGFGRSHIAPLVPAFVRRYPQIQLQLQLSVQPPPLADDGFDVCIRFGEPPDARVIAR RLAPNRRLLCAAPAYLARRGTPARPADLQQHDCIDIRQGDDAHGVWRFAGARKHESVR LRNHLATNDGEIAVNWALAGLGLVMRAEWDVARYLRSGRLVQVLQDWQTPPADIHAVY PQRHAATTRVRAFVDFVAEHFSAFTPNF" misc_feature complement(1408686..1409507) /locus_tag="Alide2_1343" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1409391..>1409501) /locus_tag="Alide2_1343" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1408716..1409306) /locus_tag="Alide2_1343" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479" /db_xref="CDD:176168" misc_feature complement(order(1408776..1408778,1408857..1408859, 1408908..1408910,1409097..1409099,1409103..1409105, 1409145..1409147,1409262..1409264,1409274..1409276)) /locus_tag="Alide2_1343" /note="putative effector binding pocket; other site" /db_xref="CDD:176168" misc_feature complement(order(1408881..1408883,1408890..1408895, 1408914..1408928,1409016..1409018,1409199..1409219, 1409223..1409225,1409235..1409237,1409244..1409249, 1409253..1409258,1409268..1409273)) /locus_tag="Alide2_1343" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176168" gene 1409718..1410785 /locus_tag="Alide2_1344" /db_xref="GeneID:10482372" CDS 1409718..1410785 /locus_tag="Alide2_1344" /EC_number="4.1.1.73" /inference="protein motif:TFAM:TIGR02089" /note="TIGRFAM: Tartrate dehydrogenase; KEGG: ajs:Ajs_1120 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase" /codon_start=1 /transl_table=11 /product="tartrate dehydrogenase" /protein_id="YP_004387263.1" /db_xref="GI:330823960" /db_xref="GO:0009027" /db_xref="GO:0051287" /db_xref="InterPro:IPR001804" /db_xref="InterPro:IPR011829" /db_xref="GeneID:10482372" /translation="MTKTYRIACIPGDGIGKEVIPAGQEVLQALAASQPGLAFEFTSY GWGGDWYREHGEMMPADGLQALRDKDAILFGSAGDPHIPDHVTLWGLRLKICQGFDQY ANVRPTRILPGIDAPLKRCAPGDLDWVIVRENSEGEYAGVGGRVHQGHPLEAATDVSM MTRAGVERIMRFAFRLAQSRPRKQLTVITKSNAQRHAMVMWDEIAVQIAQEFPGVKWD KELVDAATARMVNRPATLDTIVATNLHADILSDLAAALAGSLGIAPTGNIDPERRYPS MFEPIHGSAFDIMGKGLANPVGTFWSCVLLLEHLGEQAAAGRLMRAVEQVTADLQLHT GDLGGKATTRQVTDAVCARLA" misc_feature 1409724..1410779 /locus_tag="Alide2_1344" /note="Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445" /db_xref="CDD:193821" misc_feature 1409736..1410767 /locus_tag="Alide2_1344" /note="isocitrate dehydrogenase; Validated; Region: PRK06451" /db_xref="CDD:180566" gene 1410820..1411803 /locus_tag="Alide2_1345" /db_xref="GeneID:10482373" CDS 1410820..1411803 /locus_tag="Alide2_1345" /inference="similar to AA sequence:KEGG:Dtpsy_1041" /note="KEGG: dia:Dtpsy_1041 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387264.1" /db_xref="GI:330823961" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482373" /translation="MTTHRIHKRAFLGALALAAAGWASGAAAQAWPARPVSIIVPFPA GGTTDVLARALGQELSKTLGQPVVVENKPGAGATLGADYVAKAKADGYTLLMGAVHHT IATSVYKKLGYDFEKDLAPITTVALVPNVLVVNPQVPARTVQELLALARAQPGKLTYG SNGAGTGQHLIGAQFEGMSGAQLLHVPYKGSGPLTTDLLGGQIDMSFDTVTPVLPHIK AGKLRALAVTTARRSVALPDVPTLDEAGLKGFDMGTWFGMLAPAGTPRDVVARLNADM VKIIHSPDFRRKMDDIGAVPIGDAPEQMARRIHDDTARFARLVKDAKVSLD" sig_peptide 1410820..1410906 /locus_tag="Alide2_1345" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.747 at residue 29" misc_feature 1410919..1411791 /locus_tag="Alide2_1345" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1410973..1411785 /locus_tag="Alide2_1345" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1411882..1413204 /locus_tag="Alide2_1346" /db_xref="GeneID:10482374" CDS 1411882..1413204 /locus_tag="Alide2_1346" /EC_number="1.1.1.81" /inference="protein motif:PRIAM:1.1.1.81" /note="KEGG: ajs:Ajs_1122 hydroxypyruvate reductase; PFAM: MOFRL domain" /codon_start=1 /transl_table=11 /product="hydroxypyruvate reductase" /protein_id="YP_004387265.1" /db_xref="GI:330823962" /db_xref="InterPro:IPR007835" /db_xref="GeneID:10482374" /translation="MTETPQAPSANPQAFLLDLFRVAVQRAQPLHSMAAHLPPPPKGR TVVLGAGKAGGSMAQALEALWPQDAPLSGLVVTRYHHVPPRPEGLAQRIEVVEAAHPV PDAAGLQAAERILALTQGLTEDDLVLCLISGGGSALLTLPAEGLDLPGKQRINKALLE SGAAISEMNCVRKHLSRIKGGRLAAACAPAKVVTLTISDVPGDDPSIIASGPTVPDAS TCADALAILDRYRIEVPAAVRAALQTGALETPKPGDACFAGHEVHLIATPRQSLEAAA AAARAAGIEAHILSDEIEGESREVGKVHAALARAVAQRGQPFARPCVILSGGETTVTI RPQQPGIPRGRGGRAGEFCLGLAQALQGQEGVWALAADTDGIDGVEDNAGARVAPDTF ARAAAQGLRIGGYLDRNDAYGYFEALGDLVVTGPTNTNVNDFRAILVL" misc_feature 1411900..1413198 /locus_tag="Alide2_1346" /note="MOFRL family; Region: MOFRL; cl01013" /db_xref="CDD:154146" gene complement(1413232..1414125) /locus_tag="Alide2_1347" /db_xref="GeneID:10482375" CDS complement(1413232..1414125) /locus_tag="Alide2_1347" /inference="protein motif:PFAM:PF00126" /note="PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: axy:AXYL_05357 LysR family regulatory helix-turn-helix protein 171" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387266.1" /db_xref="GI:330823963" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482375" /translation="METRWIQDFVTLADVRNFTRAAELRNVSQAAFSRRIQALEQWLG TALVDRTCFPLRFTEAGERFRASAVALLAQIDDVRAEAAGENANNNVKLAMPYALAAT RLSPWWDDWSQGLDARLSVSTGNVLDTMQALSEGSVDLVIGYLHAASPIAPDLSRHEH LLLDTEKVRPYSVAASATDRSPRFALPDTPGHPAPLLMYSPTVYFSRVVRSILDAEGP SLHGPTVVESAMTDVLASMAEKGMGLAWLPDSCVAQGRFPSLVPAADARWCTHVDVVA FRLRHNTRPVVERVWSRMAAA" misc_feature complement(1413253..1414125) /locus_tag="Alide2_1347" /note="cell density-dependent motility repressor; Provisional; Region: PRK10082" /db_xref="CDD:182228" misc_feature complement(1413940..1414116) /locus_tag="Alide2_1347" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1413268..1413855) /locus_tag="Alide2_1347" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature complement(order(1413406..1413411,1413415..1413420, 1413436..1413453,1413757..1413777,1413790..1413792, 1413799..1413804,1413808..1413813)) /locus_tag="Alide2_1347" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 1414323..1415651 /locus_tag="Alide2_1348" /db_xref="GeneID:10482376" CDS 1414323..1415651 /locus_tag="Alide2_1348" /EC_number="4.1.1.64" /inference="protein motif:PRIAM:4.1.1.64" /note="KEGG: axy:AXYL_05358 2,2-dialkylglycine decarboxylase; PFAM: Aminotransferase class-III" /codon_start=1 /transl_table=11 /product="2,2-dialkylglycine decarboxylase (pyruvate)" /protein_id="YP_004387267.1" /db_xref="GI:330823964" /db_xref="InterPro:IPR005814" /db_xref="GeneID:10482376" /translation="MDTQLREAAKEFMVRYGGDTFPSLFRSAKGCVVTDDTGREILDF TSGQMCATIGHNHPAIVQAVQEAGEKAYHMFSGMIPEVVARLAQTMARDWMPQGLSKS IFINTGSESNEVALRMAKMYTQGFEILAVGGSWHGVTGAASAASFASDRKGYGVHVPG VFVMPEPNMYRPYIQGMDGEASALACLEIGLKMYDMASTGRRSAIIIEPIISAGGVLV PPKSYMQALRKAADERGMLLIFDEAQTAFGRIGHRHAADFFGVTPDIMAVSKTMGGGL PLAAVSTTPEIEEDIHAKGFTFYTSHVSDPLPATVGLAVLRTIQQERLIERAQSMGAY LRRRLEELQSRYEAIGDVRGEGMLLGVELVKSRETREPYHALGAITTQRCYELGLSMN IRRRPERGSVWRIAPPLTATQGEIDRGVDMLDEALRRSIDEIARNRLVPA" misc_feature 1414332..1415609 /locus_tag="Alide2_1348" /note="4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]; Region: GabT; COG0160" /db_xref="CDD:30509" misc_feature 1414335..1415603 /locus_tag="Alide2_1348" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature order(1414641..1414649,1414725..1414730,1414734..1414736, 1414944..1414946,1415043..1415045,1415049..1415054, 1415130..1415132) /locus_tag="Alide2_1348" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature order(1414644..1414649,1414725..1414730,1414944..1414946, 1415043..1415045,1415052..1415054,1415130..1415132) /locus_tag="Alide2_1348" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 1415130..1415132 /locus_tag="Alide2_1348" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 1415703..1416593 /locus_tag="Alide2_1349" /db_xref="GeneID:10482377" CDS 1415703..1416593 /locus_tag="Alide2_1349" /inference="protein motif:PFAM:PF00497" /note="KEGG: lch:Lcho_4024 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3" /codon_start=1 /transl_table=11 /product="ABC transporter periplasmic subunit" /protein_id="YP_004387268.1" /db_xref="GI:330823965" /db_xref="GO:0005215" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10482377" /translation="MQPNPIAWGAVLATLLHLPAIAQPQGTLEKVKASGAIVLGVREA SAPLSYLLGSSQYVGYHVELCERIAKNLFPQAQVRYQAVTSQNRMPLVQNGTVDLECG STSNTASRKEQVDFANTTYITEARYAVKKSSGIESTGQLAGKTIVTTTGTTLVPRLRK LEREGLKFNLVMAKDHAESMLMVAQGRADAFAMDDNTLAGNIAMLQNPQDFRIVGTPL GREPIALMLRRNDAAFKQAVDAEISKLIRSGELRAMYDKWFMSPIPPANVSLNLPFPP SLETAFSQPNSDPAEAYAMP" sig_peptide 1415703..1415771 /locus_tag="Alide2_1349" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.936) with cleavage site probability 0.936 at residue 23" misc_feature 1415811..1416479 /locus_tag="Alide2_1349" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature 1415811..1416479 /locus_tag="Alide2_1349" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature order(1415835..1415837,1415955..1415957,1416030..1416032, 1416159..1416161,1416282..1416284) /locus_tag="Alide2_1349" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1416231..1416233,1416243..1416245,1416261..1416263) /locus_tag="Alide2_1349" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 1416363..1416380 /locus_tag="Alide2_1349" /note="hinge residues; other site" /db_xref="CDD:29040" gene complement(1416672..1417601) /locus_tag="Alide2_1350" /db_xref="GeneID:10482378" CDS complement(1416672..1417601) /locus_tag="Alide2_1350" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2116 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387269.1" /db_xref="GI:330823966" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482378" /translation="MDRLDAMQMFVRVVETGSFTRVAHEFTTTQPTVTKQIAAMEARL KVRLLNRNTRGVSLTEPGTLYYEKCKAIVNDVADAESVVKVRQSQVHGQLRVGSSVAF GRRVVVPLALEFMQQNPQVQIDLSFEDRYTDLVASGIDVALRLGKLADSSLGARTLGV NPWVLVASPTYLKKHGTPRRPSDLKEHATLIYSSVQGNDLWRLRNASGEAVSVPVTGR LRSNNLSALLAAARSHMGIAALPWYVAHESLKAARVVEVLKTCRLPEQEIHAVYPSPR LVPQKVQAFIAFLQGRFGKEWWEQLPREGSSKK" misc_feature complement(1416717..1417601) /locus_tag="Alide2_1350" /note="transcriptional regulator; Provisional; Region: PRK10632" /db_xref="CDD:182601" misc_feature complement(1417416..1417592) /locus_tag="Alide2_1350" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1416735..1417328) /locus_tag="Alide2_1350" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422" /db_xref="CDD:176114" misc_feature complement(order(1416798..1416800,1416879..1416881, 1416930..1416932,1417119..1417121,1417125..1417127, 1417167..1417169,1417284..1417286,1417296..1417298)) /locus_tag="Alide2_1350" /note="putative effector binding pocket; other site" /db_xref="CDD:176114" misc_feature complement(order(1416903..1416905,1416912..1416917, 1416936..1416950,1417038..1417040,1417221..1417241, 1417245..1417247,1417257..1417259,1417266..1417271, 1417275..1417280,1417290..1417295)) /locus_tag="Alide2_1350" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176114" gene 1417712..1419502 /locus_tag="Alide2_1351" /db_xref="GeneID:10482379" CDS 1417712..1419502 /locus_tag="Alide2_1351" /EC_number="4.1.1.47" /inference="protein motif:TFAM:TIGR01504" /note="TIGRFAM: Glyoxylate carboligase; KEGG: dac:Daci_2117 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding" /codon_start=1 /transl_table=11 /product="glyoxylate carboligase" /protein_id="YP_004387270.1" /db_xref="GI:330823967" /db_xref="GO:0009028" /db_xref="InterPro:IPR006397" /db_xref="InterPro:IPR011766" /db_xref="InterPro:IPR012000" /db_xref="InterPro:IPR012001" /db_xref="GeneID:10482379" /translation="MARMKAIEAAVCVLEKEGVSVAFGVPGAAINPLYAAMKAHGGIG HILARHVEGASHMAEGYTRAVAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITG QAPRARLHKEDFQAVDIAAIAKPVTKWATTVLEPAQVPRAFQQAFHLMRSGRPGPVLI DLPIDVQLAEIEFDIETYEPLPAYKPAATRNQAEKAISMLNEAERPLIVSGGGVINAD ASALLVELAELLHVPVIPTLMGWGSIPDDHPLMAGMCGLQTSHRYGNATMLASDFVLG IGNRWANRHTGSVDVYTKGRKFVHVDIEPTQIGRVFAPDYGIVSDAGAALKLFVEVAR EWKAAGRLKDRSGWVAECQGRKNSVEYLRKTQFDDVPMKPQRVYQCMNRNLDKDTCYV STIGLSQIAGAQFLHVYKPRHWINCGQAGPLGWTVPAALGVRVADPERRIVALSGDYD FQFMIEELAVGAQFKLPYVHVLVNNSYLGLIRQAQRAFSIDYCVQLAFDNINMDEGEA SRGYGVDHVKVVEGLGCKAIRVHRPEDFAPAMRQAEAWMAEHRTPVVIECILERVTNI SMGTEIDNVIEFEELAHSKADVPSALALLD" misc_feature 1417712..1419499 /locus_tag="Alide2_1351" /note="glyoxylate carboligase; Provisional; Region: PRK11269" /db_xref="CDD:183066" misc_feature 1417733..1418203 /locus_tag="Alide2_1351" /note="Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035" /db_xref="CDD:132918" misc_feature order(1417772..1417774,1417787..1417792,1417802..1417804, 1417814..1417816,1417841..1417861,1417868..1417870, 1417877..1417882,1417889..1417894,1417898..1417903, 1417907..1417909,1417943..1417945,1417964..1417966, 1417976..1417978,1417985..1417990) /locus_tag="Alide2_1351" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature order(1417787..1417795,1417802..1417804,1417814..1417816, 1417844..1417846,1417850..1417861,1417865..1417867, 1417943..1417945,1417952..1417957,1417961..1417966, 1417973..1417975,1418075..1418077,1418084..1418086) /locus_tag="Alide2_1351" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature order(1417787..1417789,1417862..1417864,1417943..1417945, 1417955..1417957) /locus_tag="Alide2_1351" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132918" misc_feature 1418291..1418692 /locus_tag="Alide2_1351" /note="Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205" /db_xref="CDD:189448" misc_feature 1418804..1419418 /locus_tag="Alide2_1351" /note="Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin...; Region: TPP_enzymes; cl01629" /db_xref="CDD:194179" misc_feature order(1418978..1418980,1419050..1419061,1419134..1419136, 1419140..1419142) /locus_tag="Alide2_1351" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48162" gene 1419532..1420332 /locus_tag="Alide2_1352" /db_xref="GeneID:10482380" CDS 1419532..1420332 /locus_tag="Alide2_1352" /EC_number="5.3.1.22" /inference="protein motif:TFAM:TIGR03234" /note="TIGRFAM: Hydroxypyruvate isomerase; KEGG: ctt:CtCNB1_3709 xylose isomerase-like TIM barrel; PFAM: Xylose isomerase, TIM barrel domain" /codon_start=1 /transl_table=11 /product="hydroxypyruvate isomerase" /protein_id="YP_004387271.1" /db_xref="GI:330823968" /db_xref="InterPro:IPR012307" /db_xref="InterPro:IPR017643" /db_xref="GeneID:10482380" /translation="MPRFAANLSMLFTEVPFLERFERAAQAGFEAVEFLFPYAHTVDE IKERLDATGLEIVLHNLPAGDWDAGERGIACDPARVDEFRTGVSTAIAYAKALGVPQL NCLAGKAPAGVDAALLRSTFVGNLRFAAAALKAANLRLLIEPINPFDIPGFYLNRTDQ ALSILDEVGADNAFVQYDIYHAQRTEGEIASTLQKHLARIAHVQLADNPGRNEPGTGE LNYPFLFAHLDHIGYGGWVGCEYKPANGTEAGLGWLEKIAGKKAAVPA" misc_feature 1419535..1420293 /locus_tag="Alide2_1352" /note="hydroxypyruvate isomerase; Region: OH-pyruv-isom; TIGR03234" /db_xref="CDD:163190" gene 1420380..1421294 /locus_tag="Alide2_1353" /db_xref="GeneID:10482381" CDS 1420380..1421294 /locus_tag="Alide2_1353" /EC_number="1.1.1.60" /inference="protein motif:TFAM:TIGR01505" /note="TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: dac:Daci_2119 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="2-hydroxy-3-oxopropionate reductase" /protein_id="YP_004387272.1" /db_xref="GI:330823969" /db_xref="GO:0008679" /db_xref="InterPro:IPR006115" /db_xref="InterPro:IPR006398" /db_xref="GeneID:10482381" /translation="MNASSLKLGFIGLGIMGAPMCGHLIAAGHQLFVHTRGKVPGAIA ESSATQCTTARGVAERADIVFLMLPDTPDVEKVLFGEDGVAAGLKGSSGKVVVDMSSI SPVATKDFARRIEAVGARYLDAPVSGGEVGAKNATLSIMAGGHEDVFERVRPLFEKMG KNITLVGGNGDGQTAKVANQIIVALNIEAVAEALLFASRAGADPARVREALLGGFASS KILEVHAERMIRRTFEPGFRIALHQKDLNLALSAARELGVALPNTATAQQLFSACVAH GGAGWDHSGMVRALETMANFEVGQKAGA" misc_feature 1420395..1421273 /locus_tag="Alide2_1353" /note="tartronate semialdehyde reductase; Provisional; Region: PRK15059" /db_xref="CDD:185019" misc_feature 1420398..>1420850 /locus_tag="Alide2_1353" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 1421347..1421700 /locus_tag="Alide2_1354" /pseudo /db_xref="GeneID:10482382" gene 1421787..1422332 /locus_tag="Alide2_1355" /db_xref="GeneID:10482383" CDS 1421787..1422332 /locus_tag="Alide2_1355" /inference="similar to AA sequence:KEGG:Daci_0940" /note="KEGG: dac:Daci_0940 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387273.1" /db_xref="GI:330823970" /db_xref="GeneID:10482383" /translation="MAAHASTTATLIVLLPLLFWRLRARYRRLVGRQRTNKYRPWITL GIYAAILGALAWAVWGQWPALQALAGGLAAGWLLSRWAWRRTVLEATREGLYYTPHTH LGVALLLLFAARIAYRIVEVVWLLPPSQGAGLHSFIASPLTMAVFGLMAGHATGYAVA LFLWRRRVLAARREREAAAYR" gene complement(1422329..1424119) /locus_tag="Alide2_1356" /db_xref="GeneID:10482384" CDS complement(1422329..1424119) /locus_tag="Alide2_1356" /EC_number="2.3.2.2" /inference="protein motif:TFAM:TIGR00066" /note="TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: dac:Daci_2120 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase" /codon_start=1 /transl_table=11 /product="gamma-glutamyltransferase" /protein_id="YP_004387274.1" /db_xref="GI:330823971" /db_xref="GO:0003840" /db_xref="InterPro:IPR000101" /db_xref="GeneID:10482384" /translation="MNFRSTLLAGSLALTLASMVACSSPQPPSAATAQPPAATQTGAA QAAAAAYDFDMDVFHPVAAKNGMVASEQEMASRIGLNILKAGGNAVDAAVAMGFALAV ALPNAGNIGGGGFMMVHDARTGRSVALDFREVAPSRATRDMYLDAQGKVIDGKSLYTH YAVGVPGTVAGMEHALKKWGTLPLSKVVAPAVALADKGFPVSETLAKILQQEQKNMGR WPATQAIFWKNGQPLRQGDALVQKDLAQSLRLIGEQGAKAFYEGAIATKIAAEMAPHA GAITLADLKNYKVVEREPVRGSYRGYQIVTMPPPSSGGAHLIQILNMMERWPMNQWGA NSANSVHHMAESMKLAYADRSEYLGDPDFVKVPLKGLTSKRYADQLAADINPTQARTA KDIKPGKPQPYESDQTTHFSVVDKAGNAVAVTYTLNTNFGSGIVAKGTGILLNNEMDD FSAKPGVANAYGLVGGDANAVAAGKRPLSSMTPTIVLKDGKPWLVTGSPGGARIITTV LQQVVNAIDFGMNPAEAAATPRFHHQWTPDELRIEKGFSNDTLALLRQWGHNVALKPS MGRTQTIQIRDGMLYGASDPRNPDGQTLGY" sig_peptide complement(1424027..1424119) /locus_tag="Alide2_1356" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.466 at residue 31" misc_feature complement(1422332..1423969) /locus_tag="Alide2_1356" /note="Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; cl08040" /db_xref="CDD:186741" misc_feature complement(1422359..1423882) /locus_tag="Alide2_1356" /note="Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019" /db_xref="CDD:144562" gene 1424262..1424612 /locus_tag="Alide2_1357" /db_xref="GeneID:10482385" CDS 1424262..1424612 /locus_tag="Alide2_1357" /EC_number="3.5.2.17" /inference="protein motif:TFAM:TIGR02962" /note="TIGRFAM: Hydroxyisourate hydrolase; KEGG: dia:Dtpsy_1043 hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase" /codon_start=1 /transl_table=11 /product="hydroxyisourate hydrolase" /protein_id="YP_004387275.1" /db_xref="GI:330823972" /db_xref="InterPro:IPR000895" /db_xref="InterPro:IPR014306" /db_xref="GeneID:10482385" /translation="MGLSTHVLDTMHGCPAAGMAVALYSTQGEQATLIKRLVLNHDGR TDAPLFDNASLRTGTYRLTFDVAAYFKAKGVVLPEPNFLGSVSLDFGIAHADEHYHVP LLVSPWSYSTYRGS" misc_feature 1424265..1424609 /locus_tag="Alide2_1357" /note="HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU)...; Region: TLP_HIUase; cd05822" /db_xref="CDD:100114" misc_feature order(1424277..1424279,1424283..1424285,1424391..1424393, 1424559..1424561,1424565..1424567,1424571..1424573, 1424598..1424600) /locus_tag="Alide2_1357" /note="active site" /db_xref="CDD:100114" misc_feature order(1424289..1424300,1424505..1424510,1424514..1424516, 1424526..1424534,1424577..1424579,1424583..1424603) /locus_tag="Alide2_1357" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:100114" gene complement(1424771..1425298) /locus_tag="Alide2_1358" /db_xref="GeneID:10482386" CDS complement(1424771..1425298) /locus_tag="Alide2_1358" /inference="similar to AA sequence:KEGG:Dtpsy_1044" /note="KEGG: dia:Dtpsy_1044 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387276.1" /db_xref="GI:330823973" /db_xref="GeneID:10482386" /translation="MPQQSSDAPPPREPARRPFWLPASLMAMVAAIVAACKSGPQAPP PQDSGVPGAAGAAPAAVRASAAATPRAYRQDAARHLYGLNAQRIYQGKLPPLLYAIGV LEVDIDRNGRVTALRWMRAPRHAPEVVAEIERTVRAAAPFPMPARMQRVTYTDTWLWD KSGNFQLDTLTEGQL" gene 1425361..1426194 /locus_tag="Alide2_1359" /db_xref="GeneID:10482387" CDS 1425361..1426194 /locus_tag="Alide2_1359" /inference="protein motif:TFAM:TIGR02964" /note="TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; KEGG: ajs:Ajs_1125 hypothetical protein" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase accessory protein XdhC" /protein_id="YP_004387277.1" /db_xref="GI:330823974" /db_xref="InterPro:IPR014308" /db_xref="GeneID:10482387" /translation="MTVLDCLLRRIEAAPACLVTVESTQGSVPREPGAWMALFAGDPQ PLGTIGGGHLELQAMHEAHERLADHLAGRPARAAVVRRALGPSLGQCCGGVVHLRFEC VAAADAPALRRRLAPRLQPVALFGGGHVGHALARVLAPLPFALHWIDSREGVFPPQVD ADTVCEHSDPVQAAVPDLAPQSCVLIMSFSHAEDLDIVAACLLRQRERGDLPFIGLIG SRTKWATFRHRLAARGFSNEELAHITCPIGVPGITGKEPEVIAVAVAAQLLQLLPRDL A" misc_feature 1425403..1425564 /locus_tag="Alide2_1359" /note="XdhC and CoxI family; Region: XdhC_CoxI; pfam02625" /db_xref="CDD:190370" misc_feature 1425412..1426140 /locus_tag="Alide2_1359" /note="xanthine dehydrogenase accessory protein XdhC; Region: xanthine_xdhC; TIGR02964" /db_xref="CDD:163088" gene 1426476..1427693 /locus_tag="Alide2_1360" /db_xref="GeneID:10482388" CDS 1426476..1427693 /locus_tag="Alide2_1360" /inference="protein motif:PFAM:PF06181" /note="PFAM: Protein of unknown function DUF989; KEGG: ajs:Ajs_1128 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387278.1" /db_xref="GI:330823975" /db_xref="InterPro:IPR010389" /db_xref="GeneID:10482388" /translation="MESYLLDWSNLLLRWLHVITAIAWVGSSFYFVFLDSSLTPPNDE RMKRDGVTGELWAVHGGGFYHPVKYNVSPPKLPDHLHWFYWESYTTWLSGFALLTVSY LWNAGIYLVSPSNPLMPPSMAIVAALAFLVVFWLLYDGICRVFGQKDKGDAIVGALVL VLVCIAAWLACHIFPGQAAFLLMGAMLATSMSANVFFWIIPGQRKVVAALKAGQPVDP IHGKRGKQRSVHNTYFTLPVLFAMLSNHYGWLYNHPRNWLVLILMMFAGAAIRQFFVM RHGFKLGRNAHPWPYAAVGVVVLLGVLGWLRPAPQAAVAAQAGAAPAAAGYEQLHAVM QKHCVVCHSASTVAQKNVKFDTPEEVKGHAQQIYQQVVQLRKMPFGNPGALTDEERNT FKRWYEGGAPVAP" misc_feature 1426476..1427354 /locus_tag="Alide2_1360" /note="Protein of unknown function (DUF989); Region: DUF989; pfam06181" /db_xref="CDD:148030" misc_feature 1426524..1427678 /locus_tag="Alide2_1360" /note="Predicted membrane protein [Function unknown]; Region: COG3748" /db_xref="CDD:33543" misc_feature 1427466..1427666 /locus_tag="Alide2_1360" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 1427811..1428377 /locus_tag="Alide2_1361" /db_xref="GeneID:10482389" CDS 1427811..1428377 /locus_tag="Alide2_1361" /EC_number="3.5.4.13" /inference="protein motif:TFAM:TIGR02274" /note="TIGRFAM: Deoxycytidine triphosphate deaminase; KEGG: dia:Dtpsy_1050 deoxycytidine triphosphate deaminase; PFAM: DeoxyUTP pyrophosphatase domain" /codon_start=1 /transl_table=11 /product="deoxycytidine triphosphate deaminase" /protein_id="YP_004387279.1" /db_xref="GI:330823976" /db_xref="GO:0005515" /db_xref="GO:0008829" /db_xref="InterPro:IPR008180" /db_xref="InterPro:IPR011962" /db_xref="GeneID:10482389" /translation="MSIKSDKWIRRMAEQHGMIEPFEPGQVRESEGRKIISYGTSSYG YDIRCAREFKVFTNIHSTVVDPKNFDEKSFVDFEGDYCIIPPNSFALARTVEYFRIPR DVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFF QGDEECAVSYKDRNGKYQGQHGVTLPKA" misc_feature 1428030..1428287 /locus_tag="Alide2_1361" /note="Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557" /db_xref="CDD:143638" misc_feature order(1428057..1428059,1428072..1428077,1428081..1428083, 1428129..1428131,1428135..1428152,1428165..1428173, 1428183..1428185,1428192..1428194,1428213..1428215, 1428219..1428221,1428225..1428227,1428231..1428233, 1428243..1428257,1428264..1428266,1428276..1428278) /locus_tag="Alide2_1361" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:143638" misc_feature order(1428141..1428149,1428183..1428191,1428198..1428200, 1428210..1428215) /locus_tag="Alide2_1361" /note="active site" /db_xref="CDD:143638" gene 1428442..1429305 /locus_tag="Alide2_1362" /db_xref="GeneID:10482390" CDS 1428442..1429305 /locus_tag="Alide2_1362" /inference="protein motif:PFAM:PF04228" /note="PFAM: Uncharacterised protein family, zinc metallopeptidase putative; KEGG: dia:Dtpsy_1052 protein of unknown function zinc metallopeptidase putative" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387280.1" /db_xref="GI:330823977" /db_xref="InterPro:IPR007343" /db_xref="GeneID:10482390" /translation="MKWEGNRESDNVEDRRSGGGGGFVGGRSIGIGTVVLALIGWGVF GINPLTTIGVLSGGGAPQEQQAPAQRPPANDRQAAFVSTVLASTEDVWAQIFRQGGAQ YRDPKLVLYRGATPTACGTGQSAMGPFYCPGDQKVYLDMDFFDTMSRQLGAPGEFARA YVIAHEVGHHVQTLLGATAKVDGMRGRVSQREQNALSVRLELQADCYAGIWAHHSQQA KNWMDQGDIESAVNAAEQIGDDTLQRQQTGTVRPDAFTHGSSAQRVRWFTQGLKTGSV QACDTFRAQSL" misc_feature 1428442..1429287 /locus_tag="Alide2_1362" /note="Putative neutral zinc metallopeptidase; Region: Zn_peptidase; cl00988" /db_xref="CDD:120293" gene 1429394..1430836 /locus_tag="Alide2_1363" /db_xref="GeneID:10482391" CDS 1429394..1430836 /locus_tag="Alide2_1363" /inference="protein motif:PFAM:PF00270" /note="KEGG: dia:Dtpsy_1053 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal" /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase domain-containing protein" /protein_id="YP_004387281.1" /db_xref="GI:330823978" /db_xref="GO:0003676" /db_xref="GO:0004386" /db_xref="GO:0005524" /db_xref="GO:0008026" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="GeneID:10482391" /translation="MTQPYSTLALAEPLKRAVADMGYENMTPIQAQAIPVVLTGKDVM GAAQTGTGKTAAFSLPLLQRLLKHENSSASPARHPVRALVLLPTRELADQVAQQIAMY AKYTKLRSTVVFGGMDMKPQTAELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLD EADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPN ETASTVEQRFFSVQDDDKRRAIRHVLTERGLKQAFIFVNSKLGCARLARSLERDGLKT AALHGDKSQDERLKALEAFKSGDVDLLVCTDVAARGLDIKDVPAVFNHDVPFNAEDYV HRIGRTGRAGASGLAVTLVGSGDARLVADIEKLIKKKVELEPLELQEERPRGRFNDGR RAWREEGGDAPRSGGRERGGYRGAPAVVRDAFFDKPYEPSATGSGAASWEVAPKAAVA RGSISANIKHKRKLPALFKAPQPEAEPSAQ" misc_feature 1429406..1430032 /locus_tag="Alide2_1363" /note="DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (...; Region: DEADc; cd00268" /db_xref="CDD:28928" misc_feature 1429445..1430074 /locus_tag="Alide2_1363" /note="DEAD-like helicases superfamily; Region: DEXDc; smart00487" /db_xref="CDD:128763" misc_feature 1429541..1429555 /locus_tag="Alide2_1363" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28928" misc_feature 1429871..1429882 /locus_tag="Alide2_1363" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:28928" misc_feature 1429964..1429972 /locus_tag="Alide2_1363" /note="motif III; other site" /db_xref="CDD:28928" misc_feature 1430069..1430449 /locus_tag="Alide2_1363" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(1430162..1430173,1430231..1430236,1430309..1430317) /locus_tag="Alide2_1363" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(1430333..1430335,1430396..1430398,1430408..1430410, 1430417..1430419) /locus_tag="Alide2_1363" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene complement(1430937..1431551) /locus_tag="Alide2_1364" /db_xref="GeneID:10482392" CDS complement(1430937..1431551) /locus_tag="Alide2_1364" /inference="protein motif:PFAM:PF05573" /note="PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1054 hypothetical protein" /codon_start=1 /transl_table=11 /product="NosL family protein" /protein_id="YP_004387282.1" /db_xref="GI:330823979" /db_xref="InterPro:IPR008719" /db_xref="GeneID:10482392" /translation="MLAMSALAALAASAPWSVPAVRKALAPQAAPAPAPDVCIVAPPT HYDPASGLPPTAARAIPADARCPVCGMFPARSREWAAQVIFDNGDAQFFDSPLSLFMY LQDVARYSPGRSAESIVAHYVTDASAPAGDGGARWIDALGAYYVHGSSARGPMRAGNL PAFATREAAQAFAAQRGGTELAFGAIDAALIAELAGRGGHVHQH" sig_peptide complement(1431480..1431551) /locus_tag="Alide2_1364" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.854) with cleavage site probability 0.475 at residue 24" misc_feature complement(<1431087..1431392) /locus_tag="Alide2_1364" /note="NosL; Region: NosL; cl01769" /db_xref="CDD:154580" gene complement(1431603..1432139) /locus_tag="Alide2_1365" /db_xref="GeneID:10482393" CDS complement(1431603..1432139) /locus_tag="Alide2_1365" /inference="protein motif:PFAM:PF05573" /note="PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1055 NosL family protein" /codon_start=1 /transl_table=11 /product="NosL family protein" /protein_id="YP_004387283.1" /db_xref="GI:330823980" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR008719" /db_xref="GeneID:10482393" /translation="MTTCSCLTRRRALGLAAFTVLLAACGDKPGEAQSLAPVEIDRST SCELDGMLLSDYPGPKAQIHYAGQDKPAFFCDTVELFNTLLAGEQVRPVRAVYVQDMG QASWDEPKGHWIDAKAAVYVLGSKRHGSMGPTIASFAQEADATRFAGEYGGKVLRFAD IKLDMVDLSGGALHDTRM" sig_peptide complement(1432059..1432139) /locus_tag="Alide2_1365" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.679) with cleavage site probability 0.515 at residue 27" misc_feature complement(1431642..1432058) /locus_tag="Alide2_1365" /note="NosL; Region: NosL; cl01769" /db_xref="CDD:154580" gene complement(1432136..1432951) /locus_tag="Alide2_1366" /db_xref="GeneID:10482394" CDS complement(1432136..1432951) /locus_tag="Alide2_1366" /inference="similar to AA sequence:KEGG:Dtpsy_1056" /note="KEGG: dia:Dtpsy_1056 ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_004387284.1" /db_xref="GI:330823981" /db_xref="GeneID:10482394" /translation="MELTPILTVAAKEFRDRMRNRWVLAVALVFTVFSLVIAYFGGAQ QGQVGFRSIEFTIASLVSLVIYLIPLIALLLGFDAIVGERERGSLDLLLALPITRLEL LLGKYLGLAAALALSTVAGFGLVAVLLWRHMSANALFHYGGFMLSSVLLGLAFLSLAV LISVLARERTRASGLAIATWFFFVLVFDLLLLGLLVTTGGQFAGDAFAWLLLLNPADV FRILNVFSLEDVRTLYGLASVVPASLGNPLIMGGVMAAWIVLPLALAQWRFKP" misc_feature complement(<1432655..1432933) /locus_tag="Alide2_1366" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene complement(1432967..1433899) /locus_tag="Alide2_1367" /db_xref="GeneID:10482395" CDS complement(1432967..1433899) /locus_tag="Alide2_1367" /EC_number="3.6.3.25" /inference="protein motif:PRIAM:3.6.3.25" /note="PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1057 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="sulfate-transporting ATPase" /protein_id="YP_004387285.1" /db_xref="GI:330823982" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482395" /translation="MASISPASEQMAISLRGVHKHFGALHAVDGVDLDIPPGELFGLI GHNGAGKSTLFKMMLGLLAPTAGSILVAGTPVGGRHFRAARRQLGYLPENVVLYDNLD GLETLHFFARLKGAPLQDCPAMLEKVGLAHAGKRPVREYSKGMRQRLGFAQALLGKPR VLFLDEPTNGLDPQAIRDFYATLRDLQAGGVTVIITSHILAELQERVDRLAILASGQV QAVGSVQELRERTGLPLIVEVDMAPEDCHEALHALLATTGAKPAQTPTGLQLQCARTH KMAVLAALAPLGARVRDLRLQEPSLEDMFFGLSA" misc_feature complement(1432976..1433869) /locus_tag="Alide2_1367" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:31326" misc_feature complement(1433246..1433863) /locus_tag="Alide2_1367" /note="This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding...; Region: ABC_DR_subfamily_A; cd03230" /db_xref="CDD:72989" misc_feature complement(1433744..1433767) /locus_tag="Alide2_1367" /note="Walker A/P-loop; other site" /db_xref="CDD:72989" misc_feature complement(order(1433306..1433308,1433402..1433407, 1433621..1433623,1433741..1433749,1433753..1433758)) /locus_tag="Alide2_1367" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72989" misc_feature complement(1433621..1433632) /locus_tag="Alide2_1367" /note="Q-loop/lid; other site" /db_xref="CDD:72989" misc_feature complement(1433450..1433479) /locus_tag="Alide2_1367" /note="ABC transporter signature motif; other site" /db_xref="CDD:72989" misc_feature complement(1433402..1433419) /locus_tag="Alide2_1367" /note="Walker B; other site" /db_xref="CDD:72989" misc_feature complement(1433384..1433395) /locus_tag="Alide2_1367" /note="D-loop; other site" /db_xref="CDD:72989" misc_feature complement(1433300..1433320) /locus_tag="Alide2_1367" /note="H-loop/switch region; other site" /db_xref="CDD:72989" gene complement(1433874..1435142) /locus_tag="Alide2_1368" /db_xref="GeneID:10482396" CDS complement(1433874..1435142) /locus_tag="Alide2_1368" /inference="protein motif:TFAM:TIGR03804" /note="TIGRFAM: Parallel beta-helix repeat-2; PFAM: Periplasmic copper-binding; Domain of unknown function DUF1565; KEGG: dia:Dtpsy_1058 periplasmic copper-binding; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat" /codon_start=1 /transl_table=11 /product="parallel beta-helix repeat-containing protein" /protein_id="YP_004387286.1" /db_xref="GI:330823983" /db_xref="InterPro:IPR006626" /db_xref="InterPro:IPR006633" /db_xref="InterPro:IPR007742" /db_xref="InterPro:IPR011459" /db_xref="InterPro:IPR022441" /db_xref="GeneID:10482396" /translation="MTSLSHLGAALALCIAGACQAATLSVRPGDDLAAAVAKARPGDV IEVARGQYRANLLIDKPLTLRGLDRPTISGGNQGDTIRVTAPDVVIEGLIVRDSGDDL KDQNAGIYLYPGAHRAIVRRCDLTYNLFGLWIEKADDVLIEHNTITGKREYASPQRGN GVQLYNTKGAKILGNDISFVRDALYVDVSHHAVFRGNRLHHSRYGTHYMNSYYNLWED NDTYYNRGGLALMEVRNQEVRGNRAWGNSDHGIMLRTLQDSVIEGNVVAGNNRGFFIY DVEYIKLNDNLVVDNTVGVHLSAGSTRNEVEGNDFIANREQVRYVGARDERWGTRRGN YWSNYLGWDRNGDGMGDVQYEANDMVDRLTWRHPSIKLLLASPAVQALRLVGQQFPVL RVPSVVDPHPRMRPYHQDWSQWRGKHFPGQ" sig_peptide complement(1435077..1435142) /locus_tag="Alide2_1368" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 22" misc_feature complement(1433901..1435031) /locus_tag="Alide2_1368" /note="Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]; Region: NosD; COG3420" /db_xref="CDD:33226" misc_feature complement(1434048..>1434146) /locus_tag="Alide2_1368" /note="Periplasmic copper-binding protein (NosD); Region: NosD; pfam05048" /db_xref="CDD:191177" gene complement(1435139..1437760) /locus_tag="Alide2_1369" /db_xref="GeneID:10482397" CDS complement(1435139..1437760) /locus_tag="Alide2_1369" /inference="protein motif:PFAM:PF04205" /note="KEGG: dia:Dtpsy_1059 FMN-binding domain protein; PFAM: FMN-binding; SMART: FMN-binding" /codon_start=1 /transl_table=11 /product="nitrous oxide expression regulator NosR" /protein_id="YP_004387287.1" /db_xref="GI:330823984" /db_xref="GO:0010181" /db_xref="InterPro:IPR007329" /db_xref="GeneID:10482397" /translation="MFSLGQRFAAFCFALFMALALQAPRAHAGAYEAELPANLASTPD MCSLLPCTEVFPGATHFSERKGQPPYVEAYDNDSAQKKLLGYVMLSTDITDTPAYSGK PVVTLIGMDTKGHFVGLKVLKHSEPILLLGIPESALINFNNQYVGKSVTDTIEVGPSR PDENVTGVDAISGATVTVVAQNQVVMTSGAAVARQTGIIAPTVREPAKFATTGQKYDW AQLVKMGAVQQLLVKPEQVGLPRGPEPFIELWFGDLNQPDIGRSVLGDNAFDSLRSRL KEGENALFVIKTAGQESFKGSGFVRGGIFDRVQVKQGADSFTFRDLDSYNLYGLEAGG APRYTESAIFIIRSPSFSAAYPWKLAFLGNRVDRATGHRSFAVFESKYWLPASSLEGG RPKVEEPAAPWVRIWKSQALPISLFGLLLVAVTVVYALRERLTRLSTHKNKWPVNGFK YTFWALSIFWIGFGYMAQPSITQVLTWFHSLLFQWTWSLFLSDPFIFLFWIFIIVTVF LFGRGLFCGWMCPFGSLQEAIFKIAKAIGLKRFQTALPQKWHDRLKWVKYAVFFFLLT VSMFSMGLAEKLAEVEPFKTTFLVGVMNRAWPYGLFVAAILGVSIFIERPYCKYICPL GASLAMPSTFRWFGLKRKQDCNSCKACAVGCGAQAIDADGRIDHRECLHCLDCMILYT DTKGCPPLAKERKRREKDGLEITPIGKNGYFIPIHPAKVEDQISPKAKDGVDPRMPTD RTLPAHKEDVGLLQWLWLELRDHLWPWSREGWHSQRALQIAGLALAIAATIAWVQAAL GHLSSGAIIGWWFGWSVYEVLIRLSGRRYVKDGPWWRDQYRVAGVMDMMSYVGFKNLM IGAALFLVLKTLGWLIA" sig_peptide complement(1437674..1437760) /locus_tag="Alide2_1369" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.722) with cleavage site probability 0.710 at residue 29" misc_feature complement(1436321..1437688) /locus_tag="Alide2_1369" /note="Regulator of nitric oxide reductase transcription [Transcription]; Region: NosR; COG3901" /db_xref="CDD:33689" misc_feature complement(<1437242..1437466) /locus_tag="Alide2_1369" /note="FMN-binding domain; Region: FMN_bind; cl01081" /db_xref="CDD:194030" misc_feature complement(<1435616..1436395) /locus_tag="Alide2_1369" /note="Polyferredoxin [Energy production and conversion]; Region: NapH; COG0348" /db_xref="CDD:30696" misc_feature complement(1436159..1436284) /locus_tag="Alide2_1369" /note="4Fe-4S binding domain; Region: Fer4_5; pfam12801" /db_xref="CDD:193277" gene complement(1437824..1439758) /locus_tag="Alide2_1370" /db_xref="GeneID:10482398" CDS complement(1437824..1439758) /locus_tag="Alide2_1370" /EC_number="1.7.99.6" /inference="protein motif:PRIAM:1.7.99.6" /note="KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal" /codon_start=1 /transl_table=11 /product="Nitrous-oxide reductase" /protein_id="YP_004387288.1" /db_xref="GI:330823985" /db_xref="InterPro:IPR002429" /db_xref="GeneID:10482398" /translation="MSKKEDLGTETVGMGRRRFINTAALAGLTVGVAACNDKPAASPA ASGTPASAPAPAAHAGSGANVHLKPGELDTYYGLWSGGHNGDVRVLGLPSGREIHRIP CFVPDALVGWGITNESKAVMGTKPDGNLRYTVADTHHLHASYKDGNYDGRYAWVNDKI NARIARIRLDYFVCDKITDLPNVQGFHGIFPDKADPVDPAINYTTRVFCGGEFAIPLP NDGKDVNAPEKYRSLFTCVDAETMEVRWQVLIDGNCDLVATSYDGKLAATNQYNTENG IHYEDMMSAERDACLFFNVARIEEAVKAGKFKTYGNKVPVVDGTHEANKDPKTALVAY VSVPKNPHGVNASPDGKYFICAGKLSPTTTTIELAKVLDWFDGKMEKLDDAIVAEVEV GLGPLHTAFDGRGNAYTTLFLDSQIVKWNVEKAIAFHKGDKNAKYVVDRIDVHYQPGH INASQSETKAADGKFLAVGCKFSKDRFLPVGPLHPENEQLIDISGEKMVLLADHPVRG EPHDFIIFKRDLLKPKQVYELDEFPLAVKDAKESGVFRNGKKVTVKLTSQAPAFSMRE FTVKKGDEVTLILTNLDKIEDLTHGFALPKYNIQFVINPLETKSVTFVADKPGVFWAY CSTFCHALHLEMRTRMIVEA" misc_feature complement(1437827..1439569) /locus_tag="Alide2_1370" /note="nitrous-oxide reductase; Validated; Region: PRK02888" /db_xref="CDD:179492" misc_feature complement(1437830..>1438066) /locus_tag="Alide2_1370" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" gene complement(1439780..1440139) /locus_tag="Alide2_1371" /db_xref="GeneID:10482399" CDS complement(1439780..1440139) /locus_tag="Alide2_1371" /inference="similar to AA sequence:KEGG:Dtpsy_1061" /note="KEGG: dia:Dtpsy_1061 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387289.1" /db_xref="GI:330823986" /db_xref="GeneID:10482399" /translation="MDTLRSLNRLRWWIAAWFIFSLGATLASPLVQPRSMELVCSAGS GATLVVHAKTGNAVLDTLGMDCGLCLLGSAPPQPAAHAQPALPIVHSQPAPPPEAPAI APMAAPPPARGPPSFSV" sig_peptide complement(1440056..1440139) /locus_tag="Alide2_1371" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.754) with cleavage site probability 0.650 at residue 28" gene 1440367..1440780 /locus_tag="Alide2_1372" /db_xref="GeneID:10482400" CDS 1440367..1440780 /locus_tag="Alide2_1372" /inference="protein motif:PFAM:PF00034" /note="PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_1062 cytochrome c class I" /codon_start=1 /transl_table=11 /product="cytochrome c class I" /protein_id="YP_004387290.1" /db_xref="GI:330823987" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10482400" /translation="MNKTSLTMALAAAALVLAACGKSEAPASAPAPAPAPAAEAPAAA PAPAAPVAENTAGKSAYGKTCAMCHAAGVAGAPKPGDKADWGPRIAQGKETLYKHALE GFTGAKGQMPARGGNASMSDEDVKAAVDFMADQSI" sig_peptide 1440367..1440432 /locus_tag="Alide2_1372" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.599 at residue 22" misc_feature <1440520..1440774 /locus_tag="Alide2_1372" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 1440800..1441840 /locus_tag="Alide2_1373" /db_xref="GeneID:10482401" CDS 1440800..1441840 /locus_tag="Alide2_1373" /inference="protein motif:PFAM:PF02424" /note="PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: dia:Dtpsy_1063 ApbE family lipoprotein" /codon_start=1 /transl_table=11 /product="ApbE family lipoprotein" /protein_id="YP_004387291.1" /db_xref="GI:330823988" /db_xref="InterPro:IPR003374" /db_xref="GeneID:10482401" /translation="MNNGWQGGRLSRRRFALALPLLGAVAWAPAGMARAAGPQRASRN LMGTRVDIVADGGDARQLQAAIGLAFEEMQRLEASLSRYREDSVVRRIGQAAGRHPVA VPPEVMDVLASAQRVWRESAGAFDPTVGALSGWHFEPGRQSMPASAEIAAALRHVDAR QLQLDERAGTAYLAGRGMALDLGGIAKLPILAAGLRVLEREGVANALVNGGGDVLASG RLQGRPWRVGVRDPRAPDRLLGAIEVEGFGVVASSGDYERGFVHQGRRLHHVLDPHTG WPTTGVHGVALLARDVRAVNGWGTALMVQGMAAVPAWSARHPGVAVLAAGADGVLWRS DAMAEALKPVSI" sig_peptide 1440800..1440907 /locus_tag="Alide2_1373" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.975 at residue 36" misc_feature 1441016..1441753 /locus_tag="Alide2_1373" /note="ApbE family; Region: ApbE; cl00643" /db_xref="CDD:193897" gene complement(1441942..1442787) /locus_tag="Alide2_1374" /db_xref="GeneID:10482402" CDS complement(1441942..1442787) /locus_tag="Alide2_1374" /EC_number="3.6.1.41" /inference="protein motif:TFAM:TIGR00668" /note="TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: dia:Dtpsy_1064 diadenosine tetraphosphatase; PFAM: Metallo-dependent phosphatase" /codon_start=1 /transl_table=11 /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)" /protein_id="YP_004387292.1" /db_xref="GI:330823989" /db_xref="GO:0008803" /db_xref="InterPro:IPR004617" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10482402" /translation="MALYCVGDIQGCDEAFGRLLSTIGFSPSRDTVYLLGDLVNRGPG SAAVLRRCMRLGDSVRALLGNHDLHLLATAHGVRPPSRRDTLQDVLQAPDRQALLDWL RQQPLARRVRHGGTDLLMVHAGVLPQWSADDVLALADEVHAMLRGPALPDFLREMYGN SPDQWDAGLQGADRLRIIVNALTRLRFCTPEGRMDFESTESAAHAPAGLLPWFDAPGR RTSGTLIAFGHWSTLGWISRPDIQGLDTGCVWGGALSAVRFGATLAEREHCKVQCAQQ QRPGE" misc_feature complement(1441948..1442787) /locus_tag="Alide2_1374" /note="diadenosine tetraphosphatase; Reviewed; Region: apaH; PRK00166" /db_xref="CDD:178910" misc_feature complement(1442014..1442778) /locus_tag="Alide2_1374" /note="Escherichia coli ApaH and related proteins, metallophosphatase domain; Region: MPP_ApaH; cd07422" /db_xref="CDD:163665" misc_feature complement(order(1442038..1442040,1442053..1442055, 1442101..1442103,1442422..1442424,1442590..1442595, 1442665..1442670,1442677..1442679,1442758..1442760, 1442764..1442766)) /locus_tag="Alide2_1374" /note="active site" /db_xref="CDD:163665" misc_feature complement(order(1442101..1442103,1442422..1442424, 1442593..1442595,1442677..1442679,1442758..1442760, 1442764..1442766)) /locus_tag="Alide2_1374" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163665" gene 1443102..1443398 /locus_tag="Alide2_1375" /db_xref="GeneID:10482403" CDS 1443102..1443398 /locus_tag="Alide2_1375" /inference="protein motif:PFAM:PF00816" /note="PFAM: Histone-like nucleoid-structuring protein H-NS; KEGG: dia:Dtpsy_1065 histone family protein nucleoid-structuring protein H-NS" /codon_start=1 /transl_table=11 /product="histone family protein nucleoid-structuring protein H-NS" /protein_id="YP_004387293.1" /db_xref="GI:330823990" /db_xref="GO:0003677" /db_xref="InterPro:IPR001801" /db_xref="GeneID:10482403" /translation="MNASYKELLKQREALEQQINEARRRELATAVAQVRELVAEYGLT QQDVFPTGRTGRTSATSGVKVAPKYRDPVTGQTWTGRGKAPKWIQNEDREKFAI" misc_feature 1443117..1443389 /locus_tag="Alide2_1375" /note="H-NS histone family; Region: Histone_HNS; pfam00816" /db_xref="CDD:189728" misc_feature 1443294..1443395 /locus_tag="Alide2_1375" /note="Domain in histone-like proteins of HNS family; Region: HNS; cl09251" /db_xref="CDD:186852" gene 1443671..1446577 /locus_tag="Alide2_1376" /db_xref="GeneID:10482404" CDS 1443671..1446577 /locus_tag="Alide2_1376" /EC_number="4.2.1.3" /inference="protein motif:TFAM:TIGR01341" /note="TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: ajs:Ajs_1145 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel" /codon_start=1 /transl_table=11 /product="aconitate hydratase 1" /protein_id="YP_004387294.1" /db_xref="GI:330823991" /db_xref="GO:0003677" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR001030" /db_xref="InterPro:IPR006249" /db_xref="GeneID:10482404" /translation="MTASTTRVHAFASTLKTFTMASGKKGKFYSLPALARKYPGVGRL PVSIRIVLESVLRNCDGRKVTAEHVAQLANWGATAPRKDEIPFVVARVVLQDFTGVPL LADLAAMRSVAERLGRDPKKVEPLVPVDLVVDHSIMVDYYGSKQALQLNMKLEFQRNR ERYEFMKWGMQAYRTFGVVPPGFGIVHQVNLEYLARGVHQGADGVYYPDTLVGTDSHT TMINGIGVVGWGVGGIEAEAAMLGQPVYFLTPDVVGLELTGRLREGVTATDLVLTVTE LLRKAKVVGKFVEFFGEGTRTLSVPDRATIGNMAPEYGATMGFFTVDEKTIDYLRGTG RSEAEIEALEAYFKAQGLFGIPRAGEIDYSQVVRLDLGDVTPSLAGPKRPQDRIDLGK VKQQFTSLFSKPVSESGFNLPAGRLHERHALPRRADQAVPDEPPAPEGTPRFEAEMVH NKPRLAVQHVDAPMHHAPDGESPTVGSGDVLIAAITSCTNTSNPSVLLAAGLLAKKAV EAGLKVQPHIKTSLAPGSRIVTEYLTETGLLPYLEKLGFAVAGYGCTTCIGNAGDLTA ELNEAITKNDLVCAAVLSGNRNFEARIHPNIKANFLASPPLVVAYAIAGTVLTDLMTE PVGKGKGGRDVYLGDIWPSAEEIHALMRHAMNGKAFRENYAKVRAEPGALWDKVHGVS GNVYAWPPSTYIAEPPFFADFALDKGAAGAGGAGAAGQNGDVAVRGARIMALFGDSIT TDHISPAGSIKESSPAGQWLLQHGVAKPDFNSYGARRGNHEVMMRGTFANVRIKNLMI PPLADGSREEGGLTLYQGEGPQRGSKMPIFDAAMQYMAGGTPTVIFAGEEYGTGSSRD WAAKGTQLLGIKAVVAKSFERIHRSNLVGMGVLPLQLRAGDSWESLGLRGDEVIDVLP DAALAPQSEARIVIHRADGSRQEVAATLRIDTPIEVDYYRAGGILPFVLRQLLA" misc_feature 1443710..1446574 /locus_tag="Alide2_1376" /note="aconitate hydratase; Validated; Region: PRK09277" /db_xref="CDD:181750" misc_feature 1443941..>1444840 /locus_tag="Alide2_1376" /note="Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle; Region: Aconitase; cl00285" /db_xref="CDD:185883" misc_feature order(1443953..1443955,1443962..1443964,1444313..1444318) /locus_tag="Alide2_1376" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153129" misc_feature <1445102..1445521 /locus_tag="Alide2_1376" /note="Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle; Region: Aconitase; cl00285" /db_xref="CDD:185883" misc_feature order(1445132..1445134,1445330..1445332,1445339..1445344, 1445426..1445428) /locus_tag="Alide2_1376" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153129" misc_feature 1445870..1446409 /locus_tag="Alide2_1376" /note="Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group...; Region: AcnA_IRP_Swivel; cd01580" /db_xref="CDD:29529" misc_feature 1446227..1446235 /locus_tag="Alide2_1376" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29529" gene 1446600..1447820 /locus_tag="Alide2_1377" /db_xref="GeneID:10482405" CDS 1446600..1447820 /locus_tag="Alide2_1377" /inference="protein motif:PFAM:PF01266" /note="PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_1146 monooxygenase, FAD-binding" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_004387295.1" /db_xref="GI:330823992" /db_xref="GO:0016491" /db_xref="InterPro:IPR006076" /db_xref="GeneID:10482405" /translation="MQKQVLIAGGGIGGLAAALGSARAGWEVRLFERASAFTEIGAGV QIGPNVVRRLQAWGLQGALQAVAAFPERLRVRSALTGAELAALPLGARAIERYGAAYA TIHRADLHGLLLAAVRDLPGVHLNLGLSVQEHAQEGGAVTVRLAHVDGRLVEVEGDAL IGADGLRSGTRARLLGEAPTRASGHLAYRAVVRQDQLPQALRSGDVTAWLGPRLHVVQ YPLRRGELLNVVAIRHGRPPADLESWDHGANAADLEAALARTCAPLQDLIRAVPQAGG GWRLWPLLDRAPVAGPHEMARGLVALLGDAAHPMRPYLAQGAGMAIEDAAELQRALAM HDLEVPLRLTRYALNRWQRNARVQERSRRNGRIFHATGPVRWGRDLALRLLGERLLDV PWLYRGDGSSASLL" sig_peptide 1446600..1446674 /locus_tag="Alide2_1377" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.867) with cleavage site probability 0.846 at residue 25" misc_feature 1446675..1447721 /locus_tag="Alide2_1377" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene complement(1447872..1449110) /locus_tag="Alide2_1378" /db_xref="GeneID:10482406" CDS complement(1447872..1449110) /locus_tag="Alide2_1378" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1068 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004387296.1" /db_xref="GI:330823993" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10482406" /translation="MTSAPDAPVLAPRAALAMLVALTSGFALSSAFRTVAAILAAPLQ ADFALSPQALGVFAATFHFTFGAMQLFMGIGIDLYGVRRTILAAFPLCIAGALLSALA PGLGLLVLGQALIGVGCAPAFLVCTVFIARHFAPQRFAAMSGMAMALGTLGMLFTGTP LAWLVQQWSWRAGFAVLALMALLAWLWMWRSVREPARSPAHDAPRESVREAVLRFAAL FTLAHTWGIVALGAVTYAALISLRGLWLGPMLIERHGFSLVQSGNVALALSVVALCGP MLFGRIDPGPAVRRRWILTCTLLLALLFAAMALLHSAWVDVACMLLTGLLSGFIVLQY ADVRVAYPAALTGRAMAVFTMAMFLGVAAMQWFTGLVASLAQERGMDPFVAVLGCIAA LLVLGAGAFWLLPNPPSDGV" misc_feature complement(1447923..1449056) /locus_tag="Alide2_1378" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(1448022..1449047) /locus_tag="Alide2_1378" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature complement(order(1448028..1448030,1448037..1448042, 1448049..1448054,1448061..1448066,1448097..1448099, 1448103..1448108,1448118..1448120,1448127..1448132, 1448139..1448141,1448283..1448285,1448295..1448297, 1448304..1448306,1448316..1448318,1448328..1448330, 1448370..1448372,1448379..1448384,1448391..1448396, 1448403..1448405,1448649..1448651,1448667..1448672, 1448679..1448684,1448718..1448720,1448727..1448732, 1448739..1448744,1448751..1448756,1448892..1448897, 1448901..1448906,1448916..1448918,1448925..1448930, 1448937..1448939,1448988..1448993,1448997..1449005, 1449012..1449014)) /locus_tag="Alide2_1378" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(1449136..1450341) /locus_tag="Alide2_1379" /db_xref="GeneID:10482407" CDS complement(1449136..1450341) /locus_tag="Alide2_1379" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: bpe:BP2600 hypothetical protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004387297.1" /db_xref="GI:330823994" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10482407" /translation="MGDLSAVLPEKVQSSNIWRLSVAQALAGANSVVVYATGAIVGNM LAPTPMLATLPVSIFVVGMAACTLPVGAIARRFGRRTAFLAGTGAGVLTGLLAMLAII QGWFWLFCLATFFGGSYAAVVLSFRFAAADGVAPARRPRALSLVMAGGVAAGVVGPQL VTWTMDLWPPHMFAATFLVQAAVAAVSALILLGVHLPMPTAQEIAGGRPLAEIARQPR FVAAAIGGAVSYLLMNFLMTSAPLAMRICGHSQESANLGLQWHVIAMYAPSFFTGHLI ARFGAGRMAIVGLLLTGLSAAVGLGGIDVAHFWATLVLLGLGWNFGFLGASALVLECH RPEERTRVQSLNDFIVFGLMAIGSFLSGSLLSAYGWNAVLWVSFVPLVLAVVALAAAM ARSAAQARA" misc_feature complement(<1449202..1449687) /locus_tag="Alide2_1379" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(1449280..1449282,1449298..1449303, 1449310..1449315,1449349..1449351,1449358..1449363, 1449370..1449375,1449382..1449387,1449523..1449528, 1449532..1449537,1449547..1449549,1449556..1449561, 1449568..1449570,1449619..1449624,1449628..1449636, 1449643..1449645)) /locus_tag="Alide2_1379" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(1450518..1451324) /locus_tag="Alide2_1380" /db_xref="GeneID:10482408" CDS complement(1450518..1451324) /locus_tag="Alide2_1380" /inference="protein motif:PFAM:PF04397" /note="KEGG: dia:Dtpsy_1069 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain" /codon_start=1 /transl_table=11 /product="LytTR family two component transcriptional regulator" /protein_id="YP_004387298.1" /db_xref="GI:330823995" /db_xref="GO:0000156" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR007492" /db_xref="GeneID:10482408" /translation="MQPTALIAEDEPLLAAALQQELARAWPGLAIAATVGDGLSAVRE ALRLMPDVMFFDIRMPGQSGLDAAVELADAWDTGARPFPALVFVTAYDQYAVQAFEAQ AVDYLLKPVQPGRLDRTVHKLRQALQQRASPALEQTLAQLRELVQAPGVGGAAPSPAA PRLDVIQAGSGAQIHFVPVAEVLYFEAADKYVRVLTAEHEYLIRTPLKELAAQLDPAA FWQVHRGTLVRADAIAAAVRDEAGRLHLQLRGRPERLAVSRLYAHRFKGM" misc_feature complement(1450956..>1451231) /locus_tag="Alide2_1380" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1450995..1451000,1451007..1451009, 1451058..1451060,1451133..1451135,1451157..1451159)) /locus_tag="Alide2_1380" /note="active site" /db_xref="CDD:29071" misc_feature complement(1451157..1451159) /locus_tag="Alide2_1380" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1451133..1451141,1451145..1451150)) /locus_tag="Alide2_1380" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1450992..1451000) /locus_tag="Alide2_1380" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1450527..1450808) /locus_tag="Alide2_1380" /note="LytTr DNA-binding domain; Region: LytTR; cl04498" /db_xref="CDD:156100" gene complement(1451293..1452348) /locus_tag="Alide2_1381" /db_xref="GeneID:10482409" CDS complement(1451293..1452348) /locus_tag="Alide2_1381" /inference="protein motif:PFAM:PF06580" /note="PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: vei:Veis_2283 signal transduction histidine kinase, LytS" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, LytS" /protein_id="YP_004387299.1" /db_xref="GI:330823996" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR010559" /db_xref="GeneID:10482409" /translation="MPIDWIDKLRHLLQTLAFCLAVAAIQYAFRPEQPYGVPLAYSLC IGVLCWAFIDIGRHLLASSAGTGWPAGWRGMALPACGIALGFVLGSLLADAWTGHSTW SGAHLRTSIGITLLAGTAATYWFHTRGKSAWLQARMADAQGRAAEARLKLLETQLEPH MLFNTLANLRVLIASDPARAQAMLDHLIAYLRATLGASRSALHPLSEEFARLADYLAL IAVRMGPRLQYRLDLPDALRDVPVPPLLLQPLAENAIRHGLEPQVAGGSVAVQARLLK DGARLQLSVHDTGAGPGAEAGNDGTRFGLQQVRERLATLYGSAATLELIASSAGGTSA IVTFPLKHATDRPDRRG" misc_feature complement(1451311..1451919) /locus_tag="Alide2_1381" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG3920" /db_xref="CDD:33706" misc_feature complement(1451662..1451904) /locus_tag="Alide2_1381" /note="Histidine kinase; Region: His_kinase; pfam06580" /db_xref="CDD:191560" misc_feature complement(1451326..1451595) /locus_tag="Alide2_1381" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" gene complement(1452358..1452729) /locus_tag="Alide2_1382" /db_xref="GeneID:10482410" CDS complement(1452358..1452729) /locus_tag="Alide2_1382" /inference="similar to AA sequence:KEGG:Veis_2284" /note="KEGG: vei:Veis_2284 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387300.1" /db_xref="GI:330823997" /db_xref="GeneID:10482410" /translation="MHTETPAAIGGGPAERLDGRRPLPRMTDMIPDDDIERLARKRAG AKLGWYAHALVYVAVNLALFAFSRYGWGQRPWSVFPLLGWGLGLALHGVSVFVLGTGS GLRERMVQRERERLQRERQER" gene complement(1452741..1453292) /locus_tag="Alide2_1383" /db_xref="GeneID:10482411" CDS complement(1452741..1453292) /locus_tag="Alide2_1383" /inference="similar to AA sequence:KEGG:100495621" /note="KEGG: xtr:100495621 UPF0065 protein in clcB-clcD intergenic region-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387301.1" /db_xref="GI:330823998" /db_xref="GeneID:10482411" /translation="MLIHIATHQPQMLASIVQGTPSWVWYLLATLLWLGLSQTLPRQA GLRRVLFMPLALAAFSAWGLLSAFGAEPGGGALAVWLLAAGAAALASLALRGTPPAGV RFDAQALRFHLPGSPVPLLLILAIFLTKYLVGVELALQPALGHDGGFALQVAALYGLF NGLLLARAARLWHLVRRTRPAFA" gene 1453479..1454303 /locus_tag="Alide2_1384" /db_xref="GeneID:10482412" CDS 1453479..1454303 /locus_tag="Alide2_1384" /inference="protein motif:HAMAP:MF_01006" /note="TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: ajs:Ajs_1152 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA" /codon_start=1 /transl_table=11 /product="Undecaprenyl-diphosphatase" /protein_id="YP_004387302.1" /db_xref="GI:330823999" /db_xref="InterPro:IPR003824" /db_xref="GeneID:10482412" /translation="MDSLLLLKAAIMGVVEGLTEFLPISSTGHLILAGSLLGFDDAKA KVFDIAIQTGAIFAVILVYWQRIRDTLVALPSQRQARRFALNVLIGFFPAVLLGLLLG KAIKAHLFTPVVVASTFIVGGFIILWAERRQQGTVRIHSVDDMGPWDALKVGLAQCLA MVPGTSRSGATIIGGMLLGLSRKAATDYSFFLAIPTLIGAGAYSLYKERALLSMADVP LFVVGLVFSFISAWLCVRWLLRYISTHSFVPFAYYRIVFGVVVLATAWMGVVTWAD" misc_feature 1453482..1454279 /locus_tag="Alide2_1384" /note="Bacitracin resistance protein BacA; Region: BacA; cl00858" /db_xref="CDD:186224" gene complement(1454319..1455131) /locus_tag="Alide2_1385" /db_xref="GeneID:10482413" CDS complement(1454319..1455131) /locus_tag="Alide2_1385" /inference="protein motif:PFAM:PF00561" /note="PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_1074 alpha/beta hydrolase fold protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004387303.1" /db_xref="GI:330824000" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10482413" /translation="MASIVFSHANSFPASTYRVLFDALRKRGFKVSAVERYGHDERYP VSNNWPHLVQQLADFAAEQQRRTGEQAFLVGHSLGGFLSVMAAARHPELARGVVLIDS PLIGGWRAGALGMAKQAQVVGAVSPGRISRARRNSWASTEEALEHFRRKKAFAHWDPR VLQDYVAHGLQDQDGKRVLSFDRAIETQIYNTLPHNLGRLLQTHPLKCPAAFIGGRDS AEMRQVGMAMTRRITQGRVMMLDGSHLFPMEQPLATAAAIEASLLNLERLAA" misc_feature complement(1454361..1455122) /locus_tag="Alide2_1385" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 1455443..1456867 /locus_tag="Alide2_1386" /db_xref="GeneID:10482414" CDS 1455443..1456867 /locus_tag="Alide2_1386" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: dac:Daci_2256 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Uncharacterised protein domain Spy-rel" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_004387304.1" /db_xref="GI:330824001" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="InterPro:IPR012899" /db_xref="GeneID:10482414" /translation="MSNPQSCKGPVAPHGYACKGRMRLGWVAAVAAVALLAAGGAWWW QQRGAAPAQGQAAGPRFGGGGAQAQPVSVGRVERRDMRVMVSAIGTLQSRATAVVRTK VSGELKALHFNEGDEVKAGQLLAQIDPRSYQAAFDQAQGTLMRDQALLRNARLDLQRY QELKSQDSIASQQVDTQAALVRQYEGTVAADQAQVDAARLQLSYTRVTAPIAGRLGLR QADLGNVVNPADANGIVTITQLRPIDAVFSVPQAQLDRIRERQAGGAELPVELWDREQ RQLLARGRLGALDNAIDLTTDTLKVKAAFANADGRLFPNQFVNVRLQVDLLKDTLTVP AAAVQNNYVYLVQDDGTVTQRRLRVGVADGDRVSVEGDLPEGAQVVTDGLDRLREGAR VMVIDAQAAAKADQAVQDAGQRRAQMLRNLTPEQREKLSKMTADERRAFLRGLRAQRE GAASTASAPASAPAPAASPPPAAR" misc_feature 1455698..1456630 /locus_tag="Alide2_1386" /note="multidrug efflux system subunit MdtA; Provisional; Region: PRK11556" /db_xref="CDD:183194" gene 1456904..1460020 /locus_tag="Alide2_1387" /db_xref="GeneID:10482415" CDS 1456904..1460020 /locus_tag="Alide2_1387" /inference="protein motif:PFAM:PF00873" /note="PFAM: Acriflavin resistance protein; KEGG: dac:Daci_2257 acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="YP_004387305.1" /db_xref="GI:330824002" /db_xref="GO:0005215" /db_xref="InterPro:IPR001036" /db_xref="GeneID:10482415" /translation="MNLSRLFILRPIATSLLMVAILVAGMLAYRLLPISALPEVDYPT IQVTTLYPGASPDVMTSNVTAPLERQFGQMPGLAQMSSTSSGGASVITLRFALDYGLD VAEQQVQAAINAGANLLPGDLPMPPLYSKVNPADAPILTLAVTSPSLPVIRINDLVEN RLAPKLSQVGGVGLVAIAGGRRPAVRIQANPQALASVGLSLEDLRGAIAAANVKQPKG GFDGPLRATTIDANDQLQSAQEYRDLIIAYRNGNPVRLSAVADTVDDAENTRLAAWAG TPDDGSKAAVILNIKRQPGANVIETVDRVKALLPQLEETLPASLQVHVLTDRTVTIRA SVRDMQHELLLAVALVVAVIFVFLRSGTATLIPSFAVPLSLIGTFGVMYLAGFSINNL TLMALTISTGFVVDDAIVMIENIARYVEAGEPPLAAALKGARQIGFTIISLTISLIAV LIPLLFMGDVVGRLFHEFAITMAVSILISAVISLSFTPMLCARLLRHTPEESHSRLYQ ATGRFFERTIALYGRTLGVVLEHRMLVWLVFLATLALTALLYLVVPKGFFPVQDTGTL QATTVADQSISFAAMAERQQQMAERILRDPAVKSVSSFIGVDGSNTTLNSGRMQIDLQ PHGQRDSLAVVLRRLSDDTGSMPGMRLYLQPVQDLTIEDRVARTQYQLLLSSPDMEQL TRSTQALLERLLATPGLVDVASDLQGQGRQAYVSIDRAQASRLGVTVAAVDTALYNAF GQRLISTIFTQSNQYRVVLEVAPQFKIGPEALASIYVPSSGGTPVPLSSLARVEERSM ALAVNHVGQLPASTISFNTAPGVSLGQAVKAIERARDDLRAQGQMPISVDMAFQGAAL AFQASLTNTLLLILAAVITMYIVLGVLYESTIHPVTILSTLPSAGVGALLALGMAGLE IDIIAVIGIVLLIGIVKKNAIMMIDFALDAQREQGLSAREAIYQACLLRFRPILMTTL AALLGALPLMLGQGVGSELRHPLGVTMVGGLILSQLLTLFTTPVIYLTFEGWAQRWRG ARVGVENA" misc_feature 1456913..1460017 /locus_tag="Alide2_1387" /note="multidrug efflux system subunit MdtB; Provisional; Region: PRK10503" /db_xref="CDD:182501" gene 1460141..1463266 /locus_tag="Alide2_1388" /db_xref="GeneID:10482416" CDS 1460141..1463266 /locus_tag="Alide2_1388" /inference="protein motif:PFAM:PF00873" /note="PFAM: Acriflavin resistance protein; KEGG: dac:Daci_2258 acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="YP_004387306.1" /db_xref="GI:330824003" /db_xref="GO:0005215" /db_xref="InterPro:IPR001036" /db_xref="GeneID:10482416" /translation="MSPSALFVHRPVATMLLTIGLALAGAVSFFLLPVAPLPQVDYPT ISVTASLPGASPDTMAATVATPLERSLGAIAGVNEITSRSTLGNTRITLQFDLSRTVD SAAHDVQAAINAARTLLPSGMPSNPTYRKINPADAPIMILALTSSSLTRGQMYDAAST VIAQKLSQVEGVGQAAVSGGALPAVRVELDPLRLAANGISLEQVRSAITGNNANRPLG AVEREDHYWQLATNDQARVAAEYAPLVLRWNNGQAVRLSDVADVLDSVQDVRNYGVAN GKPAILLQVYKQPGANILEAVDKVRALLPQLKASIPAAIDLTVVSDRTPTLRASVQEV ERTLLLAVALVILVVFLFLRNGRAALVPAVAVPASLAGTFGVMYLAGYTLDNLSLMAL TVATGFVVDDAIVVLENVLRHMERGKSALQAALDGTREIGFTVVSMSLSLIAVFVPIL FMGGIVGRFFREFAVVMSSAILVSMVVSLTTTPMMCAHLLRAPQAQAAPRRAWARVAA WLGRIERASRRLYRRTLAWGLRHQPLVLLSLAAVVALNVHLYMAIDKGFMPEQDTGRI MGFIRADQASSFQAMQQRIQRFLAIVQQDPAVEYVMGSTGGGQINAANMFMTLKPLAE RKVSSDEVIDRLREKLRNEPGARLFMMKQTDVRIGGRQSMASFDYTLQSDGVEELRAW EPRIRQVMSELPELEDVNSDVQDYGVQTSLVIDRDAIKRLGLSMAQIDATLNDAFGQR QVGVIYNPLNQYRVVMEAAPRFLQSPETLRGFFFVNASGKQVPLTAFARIATTNTPLA VSHQGGTPASTISYSLAPGVSLSQANDAIRAAVARLGVPVSVRGSFSGTAGAFQQSLA GQPLLILAAILTIYLVLGVLYEDLVHPLTILSTLPSAGVGALLALMLFKTEFSLIAFI GVILLIGIVKKNAIMMIDFALSRERGGHTTPAQAIYRACDLRLRPILMTSLAAIMGAL PLALGQGIGAELRRPLGLAIVGGLLVSQLLTLYTTPVVYVQLDRLRRRVNRWFSMKNR SSARPSSAGSY" misc_feature 1460141..1463209 /locus_tag="Alide2_1388" /note="multidrug efflux system subunit MdtC; Provisional; Region: PRK10614" /db_xref="CDD:182589" misc_feature <1461257..1461577 /locus_tag="Alide2_1388" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" gene 1463269..1464681 /locus_tag="Alide2_1389" /db_xref="GeneID:10482417" CDS 1463269..1464681 /locus_tag="Alide2_1389" /inference="protein motif:TFAM:TIGR01845" /note="KEGG: dac:Daci_2259 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="NodT family RND efflux system outer membrane lipoprotein" /protein_id="YP_004387307.1" /db_xref="GI:330824004" /db_xref="GO:0005215" /db_xref="GO:0008289" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010131" /db_xref="GeneID:10482417" /translation="MKHTALAATALLLAAGCSTQPAYQRPAIALPAQFKEATAAAAQA GIWRPAQPQDAAPPEEWWRLYGDPVLDDLQQRAAVANPGIAQAVARLRAAQAAVAGSR AALLPTLGASSSATRARGASTANTAGPATSYSLGLNAGWEIDLWGRLSGAASAAEASA QASGADLAAARLSLQATAAQTYFALRAAEAQGALLRDTLAAYEQSWQLTRNRERAGVA SPADVAQAEAQYKSTQAQLLEAETSRAQIEHALAALIGLPPAAFGLDATARLPAPPEV PAELPSRLLERRPDIAAAERRVAAANAQVGVAQSAFFPALTLSAAGGWRGASLGDLVG APNLFWSLGPALALTLFDGGARSAAVESARASLDLAAAGYRQAVITALQEVEDNLAAA TSLAREEQVQTEAVAAAQRALTIATNQYKAGTVGYLNVLSAQTTVLSAQRGLIDVKNR RLAAVNTLLKNVAGRWDGPP" sig_peptide 1463269..1463343 /locus_tag="Alide2_1389" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.981) with cleavage site probability 0.618 at residue 25" misc_feature 1463314..1464660 /locus_tag="Alide2_1389" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature <1463812..1464006 /locus_tag="Alide2_1389" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature 1464112..1464645 /locus_tag="Alide2_1389" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(1464694..1467306) /locus_tag="Alide2_1390" /db_xref="GeneID:10482418" CDS complement(1464694..1467306) /locus_tag="Alide2_1390" /inference="protein motif:HAMAP:MF_00096" /note="KEGG: dia:Dtpsy_1076 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; manually curated; TIGRFAM: DNA mismatch repair protein MutS, type 1; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; HAMAP: DNA mismatch repair protein MutS, type 1" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein mutS" /protein_id="YP_004387308.1" /db_xref="GI:330824005" /db_xref="InterPro:IPR000432" /db_xref="InterPro:IPR005748" /db_xref="InterPro:IPR007695" /db_xref="InterPro:IPR007696" /db_xref="InterPro:IPR007860" /db_xref="InterPro:IPR007861" /db_xref="GeneID:10482418" /translation="MNKADLTEHTPMMAQYLALKAQHPDTLLLYRMGDFYELFYADAE KAARLLDITLTQRGQSAGQPVTMAGVPFHALENYLGRLIRLGESVAIAEQVGEVGAAK GPVERKVVRVVTPGTLTDSELLPDKSESVLLAVHQGARARCGLAWLAVTQGVVQLAEC TQAELGAWLARIAPSELIHSAGITQRFEEQLAGLRQGGMFACPMSLRPDWQFDAALGR RKLLEHLGAASLQAWNAEGLQDAHAAAAALLQYAEHTQGRALSHVHGVRVQQSDELIH LPLATRRNLELVKTLRGEDAPTLFSLLDTCMTGMGSRLLKTWLLEPRRDRGDARRRLA ATQALRGTGGGQGPWQLLRGALKGVSDVERITARIALRQVRPRELVALCSTLQKSELL AQSSQAPEAFLAQIFNDLQPPAECTALLRAAILEEPAALVRDGGVIAPGFDAELDELR AIQNNCDGFLLDLETREKARTGIPNLRVQFNKVHGFYIEVTSSHVDKVPGDYRRRQTL KNAERFITPELKSFEDKALSAQERGLAREKWLYEQVLDQLQPHVPRLTRLAQALAALD VLCCLAERSLTLDWCAPQFVAEPCIDIEAGRHPVVQARLAETSSGAFIPNHTRLNANT RMQIITGPNMGGKSTYMRQVALIVLLASMGSHVPATACRLGPIDAIHTRIGAADDLAN AQSTFMLEMTEAAQILHAATPHSLVLMDEIGRGTSTFDGLALASGIATHLHDRTKAFT LFATHYFELTELSARHQHAVNVHVGATESGHDIVFLHEIQPGPASRSYGIQVAKLAGV PAAVLHHARHTLAALEERAGEDDLQVDLFAPPPAPEVQAASPVEAALAQINPDALSPR EALDALYQLKRLAP" misc_feature complement(1464700..1467303) /locus_tag="Alide2_1390" /note="DNA mismatch repair protein MutS; Provisional; Region: PRK05399" /db_xref="CDD:180056" misc_feature complement(1466941..1467279) /locus_tag="Alide2_1390" /note="MutS domain I; Region: MutS_I; pfam01624" /db_xref="CDD:144998" misc_feature complement(1466521..1466919) /locus_tag="Alide2_1390" /note="MutS domain II; Region: MutS_II; pfam05188" /db_xref="CDD:147397" misc_feature complement(1465711..1465986) /locus_tag="Alide2_1390" /note="MutS family domain IV; Region: MutS_IV; pfam05190" /db_xref="CDD:147399" misc_feature complement(1464877..1465533) /locus_tag="Alide2_1390" /note="MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal...; Region: ABC_MutS1; cd03284" /db_xref="CDD:73043" misc_feature complement(1465393..1465416) /locus_tag="Alide2_1390" /note="Walker A/P-loop; other site" /db_xref="CDD:73043" misc_feature complement(order(1465072..1465074,1465174..1465179, 1465282..1465284,1465390..1465398,1465402..1465407)) /locus_tag="Alide2_1390" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73043" misc_feature complement(1465282..1465293) /locus_tag="Alide2_1390" /note="Q-loop/lid; other site" /db_xref="CDD:73043" misc_feature complement(1465228..1465269) /locus_tag="Alide2_1390" /note="ABC transporter signature motif; other site" /db_xref="CDD:73043" misc_feature complement(1465174..1465191) /locus_tag="Alide2_1390" /note="Walker B; other site" /db_xref="CDD:73043" misc_feature complement(1465156..1465167) /locus_tag="Alide2_1390" /note="D-loop; other site" /db_xref="CDD:73043" misc_feature complement(1465066..1465086) /locus_tag="Alide2_1390" /note="H-loop/switch region; other site" /db_xref="CDD:73043" gene complement(1467629..1468303) /locus_tag="Alide2_1391" /db_xref="GeneID:10482419" CDS complement(1467629..1468303) /locus_tag="Alide2_1391" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bph:Bphy_3516 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein TetR" /protein_id="YP_004387309.1" /db_xref="GI:330824006" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10482419" /translation="MQTQAPPEDHRTRVGAQRRERTRLQLLTSAIGVFNDKGADATVI DDLIAAAGVSRGTFYNHFKTTGELLTELASRMSDEVLAVVDPLVLRYHDPVERFAIGM RLYMRMTLRYPQWGRFITQVGTRVAARGQLIDKYVTRDLCTAQERKLLNVPDVAVARD MALGAIFYGIETMLTEPTRSNHAENLIRHVLIGLGLGASEAARIVDMPLQMPARVQGP VFDSLE" misc_feature complement(1467695..1468219) /locus_tag="Alide2_1391" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(1468088..1468219) /locus_tag="Alide2_1391" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1468421..1469257 /locus_tag="Alide2_1392" /db_xref="GeneID:10482420" CDS 1468421..1469257 /locus_tag="Alide2_1392" /EC_number="4.3.2.3" /inference="protein motif:PRIAM:4.3.2.3" /note="KEGG: bja:bll6360 putative bifunctional enzyme 2-hydroxyhepta-2,4-diene-1,7-dioatesomerase 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase protein; PFAM: Fumarylacetoacetase, C-terminal-like" /codon_start=1 /transl_table=11 /product="Ureidoglycolate lyase" /protein_id="YP_004387310.1" /db_xref="GI:330824007" /db_xref="InterPro:IPR002529" /db_xref="GeneID:10482420" /translation="MRLFRFGAVGQEKPGALDRSGRMRDMSLLIPDWTPEWMAPERLK ALQAIDLDKLPLVAEGTRIGAPLAGIRQFVAIGLNYRQHAMEAGMEIPREPVVFNKAI TCIAGPNDTVELPPDSVEGDWEVELGIIIGSKAQKVGEAEALSHVAGYVLANDVSERE WQAKRNGQWGKGKSFDGFGPIGPWLVTTDELADPQNVPLTLTVNGQVRQKSNTSDMIF PVAYIVSYLSRFMTLLPGDLVITGTPQGVGLGMKPPVFLRRGDVMTLDGGVLGTQRQQ VV" misc_feature 1468640..1469254 /locus_tag="Alide2_1392" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 1469339..1470274 /locus_tag="Alide2_1393" /pseudo /db_xref="GeneID:10482421" gene 1470288..1470753 /locus_tag="Alide2_1394" /pseudo /db_xref="GeneID:10482422" gene 1470832..1471062 /locus_tag="Alide2_1395" /db_xref="GeneID:10482423" CDS 1470832..1471062 /locus_tag="Alide2_1395" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387311.1" /db_xref="GI:330824008" /db_xref="GeneID:10482423" /translation="MGAAVAAALRQLNARAAVIVPAGADAGQQGWEDLDGKFLPFMEQ HGIETMLVRPDSMARLAPGGILRPCSWIARRI" gene complement(1471098..1472084) /locus_tag="Alide2_1396" /db_xref="GeneID:10482424" CDS complement(1471098..1472084) /locus_tag="Alide2_1396" /inference="similar to AA sequence:KEGG:Daci_5118" /note="KEGG: dac:Daci_5118 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387312.1" /db_xref="GI:330824009" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482424" /translation="MPSFSLRPGAHALIGGLALAAGTAALAQAAYPSKPIRLIVPFAA GGTTDIIARVVADPLGRELGQPVVVDNKSGAGGTIGATEAMRAKPDGYTLSVATVSTT ATNPAITPKFPYDPETDFVPIINIAATPNVIAVNPRFPGHDYKGFVEELKKSPGKYAY ASTGTGSITHMLMELYKGMAGVQMTHIPYRGAGPALNDVVAGQVNMNLDNLPSSLPFI RDGRLIPIVVAAPQRLAVLPNVPTFKEVGLEPVNRMAYYGIVGPKGTPREVVDRINAA LKKVLAEPAVKKRIDDTGSLVIANTPEQFAEQIRNEFAIYKDVVRKQKLTLE" sig_peptide complement(1472001..1472084) /locus_tag="Alide2_1396" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.560 at residue 28" misc_feature complement(1471110..1471994) /locus_tag="Alide2_1396" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1471119..1471934) /locus_tag="Alide2_1396" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1472123..1473319) /locus_tag="Alide2_1397" /db_xref="GeneID:10482425" CDS complement(1472123..1473319) /locus_tag="Alide2_1397" /EC_number="1.1.2.3" /inference="protein motif:PRIAM:1.1.2.3" /note="KEGG: dac:Daci_0789 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase" /codon_start=1 /transl_table=11 /product="L-lactate dehydrogenase (cytochrome)" /protein_id="YP_004387313.1" /db_xref="GI:330824010" /db_xref="InterPro:IPR000262" /db_xref="GeneID:10482425" /translation="MASYAEPSPVTVPVALRNMLSLHDFEAAARRRLPRPIFGYIAGA AEDNTSLRDNREVFGEYGFATRVLRDVSRRSQAVELFGQRYSSPFGIAPMGINALSTY RGDLVLARAAQQAGIVSIMSGTSLIPMEEVARESPATWFQAYIPGDQERIDALVDRVA RAGFGTLVVTVDIPVSANRENNIRTGFSTPLRPSLRLAWDGMVRPRWVAGTFLHTLLR HGMPHFENSFATRGAPIVSSSVLRDFSARDHLNWGHIEAIRRRWKGPLVVKGLLSVED ALQARRVGADAVVLSNHGGRQLDGAISPLRVLEAVVAAVGPDYPVLIDSGFRRGSDVL KALALGARMVLVGRPFNYAAAVAGEAGVAHAIGLLQEEVDRNMAMLGVTGCAELGPQH IVRRRA" misc_feature complement(1472132..1473256) /locus_tag="Alide2_1397" /note="Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]; Region: idi; COG1304" /db_xref="CDD:31495" misc_feature complement(1472150..1473250) /locus_tag="Alide2_1397" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature complement(order(1472276..1472281,1472342..1472347)) /locus_tag="Alide2_1397" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73384" gene 1473432..1474346 /locus_tag="Alide2_1398" /db_xref="GeneID:10482426" CDS 1473432..1474346 /locus_tag="Alide2_1398" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0788 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387314.1" /db_xref="GI:330824011" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482426" /translation="MSQPSIKQLEAFWWAATCANFATAAERVHLSVSSLSKRIAELEA TLGQPLFDRSGHRAVLTEAGERLLPATLDVLNAMAALGQTLDARAALAGRCRFGVGDL SALTWLPAFVAAVRRAHPQLELEPFVDVGGVLERRLADGELDFAVIAGRSSRSALLSQ PVGAAHFAWAAAPGLPGADRLDAAALLRCHPLVTLPHGAGTTRLLDDWLLANHAAAHE RIVCNSWGAVAGMLRQGVGVGFLPAHWVDALSLRAVGAGMPLAPLHYAFQWRRGDARA LIAALRPLAQAQVDFSVSPVFTGVVSQR" misc_feature 1473447..1473626 /locus_tag="Alide2_1398" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1473717..1474247 /locus_tag="Alide2_1398" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature order(1473756..1473761,1473765..1473770,1473777..1473779, 1473789..1473791,1473795..1473815,1474086..1474103, 1474119..1474124,1474128..1474133) /locus_tag="Alide2_1398" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(1474383..1475963) /locus_tag="Alide2_1399" /db_xref="GeneID:10482427" CDS complement(1474383..1475963) /locus_tag="Alide2_1399" /EC_number="3.1.3.1" /inference="protein motif:PRIAM:3.1.3.1" /note="KEGG: dia:Dtpsy_1077 alkaline phosphatase; PFAM: Alkaline phosphatase D-related" /codon_start=1 /transl_table=11 /product="alkaline phosphatase" /protein_id="YP_004387315.1" /db_xref="GI:330824012" /db_xref="InterPro:IPR018946" /db_xref="GeneID:10482427" /translation="MPTLAAMHRRRLLQQAAWAAMATQLPRWAWARQTLRHDPFGLGV ASGEPLPDGVVLWTRLLPPDPADAAAPWAGPLTVRWEVADDAQFRRIVQHGSATALPD LAHSVHVEVAGLQPGRWYYYRFMLGDAVSAVGRTRTAPAPHALERRLRMVYASCQRWE HGYYAAWRHACADQPDLVLFLGDYIYEYASPKDANGLARTHGLRLPRSLADYRERYAL HKSDPDLQVAHACAPWVVTWDDHEVQNDYAGDHGRGDAAEWLPLRTAAWQAFYEHMPL RASTLNSSAFQGLQLYRRLHWGRLARLHVLDARQYRDLQACRKPGGGSAGAVRPEACP ELTDPQRSFLGWQQEQWLQAGLAQDARERATHWSVLAQQTLFAPRHYPSGLQSTDSWD GYPAARERLCHALAQQTPRNTVLLGGDIHQNYVCNVPAPPGAGGAARILASEFCGTSI SSRAGTTQDKVDAIRRLNPHVLLARCDERGYGLCDITPTLWTTRLRAIRDPLDAGSDA YTLARFVVEDGRPGPRPA" misc_feature complement(1474479..1475840) /locus_tag="Alide2_1399" /note="PhoD-like phosphatase; Region: PhoD; pfam09423" /db_xref="CDD:192289" misc_feature complement(<1475025..1475516) /locus_tag="Alide2_1399" /note="Bacillus subtilis PhoD and related proteins, metallophosphatase domain; Region: MPP_PhoD; cd07389" /db_xref="CDD:163632" misc_feature complement(order(1475037..1475039,1475241..1475246, 1475415..1475417,1475490..1475492,1475496..1475498)) /locus_tag="Alide2_1399" /note="putative active site [active]" /db_xref="CDD:163632" misc_feature complement(order(1475037..1475039,1475244..1475246, 1475415..1475417,1475490..1475492,1475496..1475498)) /locus_tag="Alide2_1399" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163632" misc_feature complement(1474680..>1474799) /locus_tag="Alide2_1399" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" gene complement(1475990..1477570) /locus_tag="Alide2_1400" /db_xref="GeneID:10482428" CDS complement(1475990..1477570) /locus_tag="Alide2_1400" /inference="protein motif:TFAM:TIGR00254" /note="SMART: Diguanylate cyclase, predicted; TIGRFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1078 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004387316.1" /db_xref="GI:330824013" /db_xref="InterPro:IPR000160" /db_xref="GeneID:10482428" /translation="MKLRSVTLRTLCIFLPILQMDSAKSPSEVARETLKLLAARRLSP TPDNYQALYEEVSGVRAAPNFPTAQLRHILHVMPGQTPGQKRLLGQLENAVAQQDWSM LKNVLVGYANLGLSPVATPPPASVSITQLPTTLAQNLARLVSNTLPALGEDDPRVHEL AAQLCAFLREPERPIATAELMLSDFSYRLSFAAEDQAAIRQGLLGLLRLVFENIAALS IDEPWLHGQAEALLAASTPPLTLRRLDDVHKRLKDVIFKQSEAKDRTVQAQTQMRELL ATFIERLAQMDESSSTYNETMERCAERIGRATQLQDIMPLLEEVMAATRAMALNSHVT RSELQDLRERTEATHAEITQLRRDLDHASAQARHDPLTGALNRKGLDEAMEREIARAF RLDTPLCVALLDVDNFKAINDRLGHAAGDEALMHLVRVTREVMRPQDQLARHGGEEFV LILPNTQLADGVKAMERLQRELTKRYFLKEQERLLITFSAGVAQVEGKNGSADAIRRA DEGMYLAKRSGKNRVVAA" misc_feature complement(1475999..1476472) /locus_tag="Alide2_1400" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(1476230..1476232,1476359..1476361)) /locus_tag="Alide2_1400" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(1476227..1476238,1476242..1476244, 1476308..1476310,1476320..1476322,1476332..1476337, 1476344..1476346)) /locus_tag="Alide2_1400" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(1476170..1476172,1476254..1476256)) /locus_tag="Alide2_1400" /note="I-site; other site" /db_xref="CDD:143635" gene 1477636..1478457 /locus_tag="Alide2_1401" /db_xref="GeneID:10482429" CDS 1477636..1478457 /locus_tag="Alide2_1401" /EC_number="3.1.3.6" /inference="protein motif:TFAM:TIGR00087" /note="TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; KEGG: ajs:Ajs_1160 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase" /codon_start=1 /transl_table=11 /product="stationary-phase survival protein SurE" /protein_id="YP_004387317.1" /db_xref="GI:330824014" /db_xref="GO:0016787" /db_xref="InterPro:IPR002828" /db_xref="GeneID:10482429" /translation="MASYNGLHSVTVTMKILISNDDGYQAPGIVALHDALKAIADVEV VAPEHNNSAKSNALTLHSPLYVHRAANGFRYVNGTPADCVHIALTGVLGYRPDLVVSG INNGANMGDDTIYSGTVGAAMEGYLFGIPSMAFSQVDKGWGELDSAARKAREIVEQMQ RHKLVGGAPWLLNINIPNMPFDALRPLRLCRLGRRHAAERVIEQQSPRGELMYWIGGA GPAKDASEGTDFHATAHGHVSMTPLKVDLTDHDGLGYWAQTAARLVPQRVQDGGG" misc_feature 1477675..1478409 /locus_tag="Alide2_1401" /note="Survival protein SurE; Region: SurE; cl00448" /db_xref="CDD:193823" gene 1478457..1479230 /locus_tag="Alide2_1402" /db_xref="GeneID:10482430" CDS 1478457..1479230 /locus_tag="Alide2_1402" /EC_number="2.1.1.77" /inference="protein motif:TFAM:TIGR00080" /note="TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: dia:Dtpsy_1081 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase" /codon_start=1 /transl_table=11 /product="protein-L-isoaspartate O-methyltransferase" /protein_id="YP_004387318.1" /db_xref="GI:330824015" /db_xref="GO:0004719" /db_xref="InterPro:IPR000682" /db_xref="GeneID:10482430" /translation="MQRRPGFPARIDWTKDAAPAASLAPARVRREAPPPTPQGVGLDS AAVRARMVQRLAAAGITAVPVLQAMGNVERHRFVDTALVNQAYEDTSLPIGLGQTISK PSVVARMTELLLGAQCARAGGLGRVLEIGTGCGYQAAVLARLAREVYTIERLRALHEK ARENLRPLRLANVHLILGDGMLGYAGGAPYAGIISAAGGGSLPPQWCEQLAMGGRLVA PMAGVDGRQMLLVVDKTPKGLEQTVLEAVHFVPLKSGVV" misc_feature 1478577..1479224 /locus_tag="Alide2_1402" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1479242..1480144 /locus_tag="Alide2_1403" /db_xref="GeneID:10482431" CDS 1479242..1480144 /locus_tag="Alide2_1403" /inference="protein motif:PFAM:PF01551" /note="KEGG: dia:Dtpsy_1082 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup" /codon_start=1 /transl_table=11 /product="peptidase M23" /protein_id="YP_004387319.1" /db_xref="GI:330824016" /db_xref="InterPro:IPR002482" /db_xref="InterPro:IPR016047" /db_xref="InterPro:IPR018392" /db_xref="GeneID:10482431" /translation="MFVSRGLVALGVFVLAGGGLLAGCSAPVNRAPVVDRGTFANGGA TPASTAPEAKPLPGAENAGKPGYYTVKPGDTLIRIGLENGQSWKDIARWNNLENANLI EVGQVLRVVPPAASVASDTGVVTRPVVSSPLASASPASVPKPTASAASAPTAPASAAA APAPAPAPEPAPAMAGGADDMRFIWPSSGTLLAGFDEVRNKGYDIAGKAGDPVLAAAD GRVVYAGAGLRGYGNLVILKHNNTFLTAYAHNQTLLVKEDQNVRRGQKIAEMGSTDAD RVKLHFEIRRQGKPVDPARYLPAR" misc_feature <1479320..1479604 /locus_tag="Alide2_1403" /note="autolysin; Reviewed; Region: PRK06347" /db_xref="CDD:180536" misc_feature 1479440..1479571 /locus_tag="Alide2_1403" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature order(1479443..1479445,1479452..1479454,1479461..1479463, 1479476..1479478,1479485..1479487) /locus_tag="Alide2_1403" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" misc_feature 1479839..1480120 /locus_tag="Alide2_1403" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene 1480141..1481151 /locus_tag="Alide2_1404" /db_xref="GeneID:10482432" CDS 1480141..1481151 /locus_tag="Alide2_1404" /inference="protein motif:TFAM:TIGR00005" /note="TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: dia:Dtpsy_1083 pseudouridine synthase, RluA family; SMART: RNA-binding S4" /codon_start=1 /transl_table=11 /product="RluA family pseudouridine synthase" /protein_id="YP_004387320.1" /db_xref="GI:330824017" /db_xref="GO:0003723" /db_xref="GO:0009982" /db_xref="InterPro:IPR002942" /db_xref="InterPro:IPR006145" /db_xref="InterPro:IPR006225" /db_xref="GeneID:10482432" /translation="MSKQVAGDGLPWPDEESDPQRTAEEESDAELREVMVPAAQHQAR LDKALAELVPEFSRSYLQQLLAQGDVRLNGQPAAKPAHKVRAGDQVAVRMRPTQQSQA FKPESLPLDVVHEDEHLLVIDKPAGLVVHPAPGNWSGTLLNALLGRDAQAMQVPRAGI VHRLDKDTSGLMVVARNRAAMDALVRMIAAREVSRQYLALAWGAWSGSEQRRIRAPIG RDPRNRLRMAVVDLGQHAGKEACTDFDLLASGEEVCLVRCTLHTGRTHQIRVHMASIR HPLVADALYGGAVGGPMRRQALHAFRLAFTHPVTGKPMEFHAPLPEDMRQALDFWGLR YN" misc_feature 1480237..1481106 /locus_tag="Alide2_1404" /note="Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564" /db_xref="CDD:30910" misc_feature 1480270..1480506 /locus_tag="Alide2_1404" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature order(1480270..1480272,1480306..1480311,1480315..1480320, 1480324..1480329,1480336..1480341,1480345..1480347, 1480366..1480389,1480393..1480395) /locus_tag="Alide2_1404" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature 1480495..1481055 /locus_tag="Alide2_1404" /note="PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF...; Region: PseudoU_synth_RluCD_like; cd02869" /db_xref="CDD:30029" misc_feature order(1480624..1480635,1480945..1480947) /locus_tag="Alide2_1404" /note="active site" /db_xref="CDD:30029" gene 1481320..1481988 /locus_tag="Alide2_1405" /db_xref="GeneID:10482433" CDS 1481320..1481988 /locus_tag="Alide2_1405" /inference="protein motif:TFAM:TIGR00281" /note="KEGG: dia:Dtpsy_1084 chromosome segregation and condensation protein, ScpB; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote" /codon_start=1 /transl_table=11 /product="chromosome segregation and condensation protein ScpB" /protein_id="YP_004387321.1" /db_xref="GI:330824018" /db_xref="InterPro:IPR005234" /db_xref="GeneID:10482433" /translation="MNSVEAKRVLETALICAPQPVSVRELRTLFDDALGSDTVKALLL ELQQDWALRGVELVQVATGWRFQSRPEMREYLDRLHPEKPPRYTRATLETLAIIAYRQ PVTRGDIEDIRGVTVNSLIIKQLEDRGWIEVVGHRDTVGRPALLATTRQFLDDLGLQS LDQLPMLEDPGVQANVLDALGAAADTQQPGEEMAVQSGEEIAGAPALVAGVTDEDGDG VAGS" misc_feature 1481341..1481820 /locus_tag="Alide2_1405" /note="Putative transcriptional regulators (Ypuh-like); Region: DUF387; cl00612" /db_xref="CDD:186106" gene 1481990..1483345 /locus_tag="Alide2_1406" /db_xref="GeneID:10482434" CDS 1481990..1483345 /locus_tag="Alide2_1406" /inference="protein motif:TFAM:TIGR00093" /note="TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: dia:Dtpsy_1085 pseudouridine synthase; SMART: RNA-binding S4" /codon_start=1 /transl_table=11 /product="pseudouridine synthase Rsu" /protein_id="YP_004387322.1" /db_xref="GI:330824019" /db_xref="GO:0003723" /db_xref="GO:0016866" /db_xref="InterPro:IPR000748" /db_xref="InterPro:IPR002942" /db_xref="InterPro:IPR006145" /db_xref="GeneID:10482434" /translation="MNDSNKALEAAQAPAEAQVPASAEAPKARRPRTRKPAGKAASAD HGADAPRQQEPQAQADAPSASAEAADRPQRPEHRDAARKHGRRDGKPAPRGDGYRFAD VVSGQLDQDEGDTEVVPHKRVLLPQPESPKLHKVLAQAGMGSRLEMEQLILEGRISVN NEPAHIGQRVQFGDQIKVNGKPIRFRVAPPPTRVIAYHKPVGEVVTHDDPQNRPTVFR KLPRLQQGKWQSVGRLDLNTEGLLLFTSSGELANKLMHPRFGLEREYAVRVLGALSDE ERQRLLDGVSLEDGMAAFGSIEDGGGEGANCWYRVTISEGRNREVRRMFEAVGHAVSR LIRIRYGAMMLPRGLKRGAWLELDEHDIRALMQAAGVPADAGGGARAGRNGRRGERKP MGAKMQGEGRGKAAGRAGRSSGSSQPDPMKTSVGYIGADSFSRHRQQQQRGGGSRRGG R" misc_feature 1482374..1483090 /locus_tag="Alide2_1406" /note="16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187" /db_xref="CDD:31380" misc_feature 1482386..1482583 /locus_tag="Alide2_1406" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature order(1482416..1482421,1482425..1482430,1482434..1482439, 1482446..1482451,1482455..1482457,1482476..1482487, 1482488..1482496,1482500..1482502) /locus_tag="Alide2_1406" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature 1482566..1483066 /locus_tag="Alide2_1406" /note="PseudoU_synth_RluB: Pseudouridine synthase, Escherichia coli RluB like. This group is comprised of bacterial and eukaryotic proteins similar to E. coli RluB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...; Region: PseudoU_synth_RluB; cd02556" /db_xref="CDD:30013" misc_feature order(1482683..1482694,1482953..1482955) /locus_tag="Alide2_1406" /note="probable active site [active]" /db_xref="CDD:30013" gene 1483424..1483849 /locus_tag="Alide2_1407" /db_xref="GeneID:10482435" CDS 1483424..1483849 /locus_tag="Alide2_1407" /EC_number="2.7.4.6" /inference="protein motif:PRIAM:2.7.4.6" /note="PFAM: Nucleoside diphosphate kinase; KEGG: ajs:Ajs_1166 nucleoside diphosphate kinase; SMART: Nucleoside diphosphate kinase" /codon_start=1 /transl_table=11 /product="nucleoside-diphosphate kinase" /protein_id="YP_004387323.1" /db_xref="GI:330824020" /db_xref="InterPro:IPR001564" /db_xref="GeneID:10482435" /translation="MAIERTLSIIKPDAVAKNVIGQIYARFEAAGLKIAAARMIHLSR AEAEQFYAVHKERPFFKDLVDFMISGPVMVQVLEGENAILKNRELMGATDPKKAEAGT IRADFADSIDANAVHGSDAAETAQVEVAFFFPGLNVYAR" misc_feature 1483433..1483822 /locus_tag="Alide2_1407" /note="Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413" /db_xref="CDD:58528" misc_feature order(1483454..1483456,1483574..1483576,1483598..1483600, 1483682..1483684,1483700..1483702,1483733..1483735, 1483763..1483765,1483772..1483774,1483778..1483783, 1483805..1483807) /locus_tag="Alide2_1407" /note="active site" /db_xref="CDD:58528" misc_feature order(1483466..1483468,1483481..1483489,1483496..1483498, 1483505..1483507,1483532..1483540) /locus_tag="Alide2_1407" /note="multimer interface [polypeptide binding]; other site" /db_xref="CDD:58528" gene 1483937..1485061 /locus_tag="Alide2_1408" /db_xref="GeneID:10482436" CDS 1483937..1485061 /locus_tag="Alide2_1408" /inference="protein motif:HAMAP:MF_01849" /note="TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: dia:Dtpsy_1087 radical SAM enzyme, Cfr family; PFAM: Radical SAM" /codon_start=1 /transl_table=11 /product="ribosomal RNA large subunit methyltransferase N" /protein_id="YP_004387324.1" /db_xref="GI:330824021" /db_xref="InterPro:IPR004383" /db_xref="InterPro:IPR007197" /db_xref="GeneID:10482436" /translation="MTTNLLDLDLDAMAAFCERLGEKRFRATQLFRWIHQRGASDFDQ MSDLAKSLREKLKGCAHVSGLQAISEHASADGTVKWLFDVGGGNAVETVFIPEDDRGT LCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRGDGERVISNVV MMGMGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAV SLHAPNDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHA RELIALVSRKAADGGVSCKFNLIPFNPFPASGLRRSPAVAVSAFAKLLSDAGIVTTVR KTRGDDIDAACGQLAGDVKDRTRVGERMARLRTIEIKPIT" misc_feature 1483943..1485049 /locus_tag="Alide2_1408" /note="ribosomal RNA large subunit methyltransferase N; Provisional; Region: PRK11194" /db_xref="CDD:183031" misc_feature 1483973..1485007 /locus_tag="Alide2_1408" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" gene 1485083..1485910 /locus_tag="Alide2_1409" /db_xref="GeneID:10482437" CDS 1485083..1485910 /locus_tag="Alide2_1409" /inference="protein motif:TFAM:TIGR02521" /note="KEGG: dia:Dtpsy_1088 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1" /codon_start=1 /transl_table=11 /product="type IV pilus biogenesis/stability protein PilW" /protein_id="YP_004387325.1" /db_xref="GI:330824022" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR013360" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10482437" /translation="MTVWRTDRGRAGRWLLAACVAAAVLAALAGCAHRAADPGASEPV AGSGGETDVRRRARIRLELAANYMQMGQTAVALDEVRQALATDPGYADAYHLRGLVYM SMGDLALAEDSLKRAQAMKPADPDIMHNYGWLQCQRQQYEQANQLFERALATPTYAAR SKTLMSQGLCYQRAGRAADAEQTLLRAYEIDAGNPVVGYHLASIMLARAEAKRAQFYI RRVNNGEFANAQSLWLGIKVERALGDSVAMRQLGDQLHKRFPDAKETSAFDRGAFHE" sig_peptide 1485083..1485193 /locus_tag="Alide2_1409" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.980) with cleavage site probability 0.616 at residue 37" misc_feature 1485278..1485541 /locus_tag="Alide2_1409" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1485278..1485280,1485365..1485370,1485374..1485379, 1485386..1485391,1485467..1485472,1485479..1485484, 1485491..1485496) /locus_tag="Alide2_1409" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1485308..1485310,1485320..1485322,1485329..1485331, 1485374..1485376,1485410..1485412,1485422..1485424, 1485431..1485433,1485476..1485478,1485512..1485514, 1485524..1485526,1485533..1485535) /locus_tag="Alide2_1409" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 1485458..1485745 /locus_tag="Alide2_1409" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(1485458..1485463,1485467..1485472,1485479..1485484, 1485575..1485580,1485584..1485589,1485596..1485601, 1485677..1485682,1485689..1485694,1485701..1485706) /locus_tag="Alide2_1409" /note="binding surface" /db_xref="CDD:29151" misc_feature order(1485476..1485478,1485512..1485514,1485524..1485526, 1485533..1485535,1485584..1485586,1485620..1485622, 1485632..1485634,1485641..1485643,1485686..1485688, 1485722..1485724,1485734..1485736,1485743..1485745) /locus_tag="Alide2_1409" /note="TPR motif; other site" /db_xref="CDD:29151" gene 1485903..1486799 /locus_tag="Alide2_1410" /db_xref="GeneID:10482438" CDS 1485903..1486799 /locus_tag="Alide2_1410" /inference="similar to AA sequence:KEGG:Dtpsy_1089" /note="KEGG: dia:Dtpsy_1089 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387326.1" /db_xref="GI:330824023" /db_xref="GeneID:10482438" /translation="MSESMATHDADHSAPAAGESAGVLLRRLRESAGVHIGALAAALK VPVAKLQALEADDQDAFPDVVFMRALASSVCRTLKVDAAPVLALLPQGRPAQLPPDKG INASFKDPIRRGGKGVSLEQPRSRLVGIAALVLLAAALAMAFLPLGTSDKSGEAEPAA QPPQQVAPTQDAREPGDAAAGQPGPAATQEVPAAQAPAVPGPARAAASADDAPAAQAP EPEGVLVIRARAESWVQVRNGAGRVVLQKAMAAGENYSAEGPSPWSVVVGKADATDVI VRGQPMDLKAIARENVARFEVK" misc_feature <1486572..1486793 /locus_tag="Alide2_1410" /note="cytoskeletal protein RodZ; Provisional; Region: PRK10856" /db_xref="CDD:182782" gene 1486800..1488074 /locus_tag="Alide2_1411" /db_xref="GeneID:10482439" CDS 1486800..1488074 /locus_tag="Alide2_1411" /inference="protein motif:TFAM:TIGR00612" /note="KEGG: dia:Dtpsy_1090 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type" /codon_start=1 /transl_table=11 /product="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" /protein_id="YP_004387327.1" /db_xref="GI:330824024" /db_xref="GO:0046429" /db_xref="InterPro:IPR004588" /db_xref="GeneID:10482439" /translation="MNMPDTAAPIAMVAPLARRSRQARIVWGSRVVTVGGDAPVRVQS MTNTDTVDAIGTAIQVKELAQAGSEFVRITVNTPEAAAAVPYIREQLDRMGESVPLVG DFHYNGHRLLTEFPDCAQALSKYRINPGNVGKGDKRDKQFGQMIEAAMRWDKAVRIGV NWGSLDQELLADLMDANSQRAEPWDARQVMYEALITSAIESARRAEAMGLAGEQIILS CKVSGVQDLIAVYRELARRCDYALHLGLTEAGMGTKGIVASTTALSILLQEGIGDTIR VSLTPQPGEARTQEVVVAAEILQSLGLRAFVPSVTACPGCGRTTSTTFQELAKQIDDY LRAQMPVWRLRYPGVERLKVAVMGCIVNGPGESKHADIGISLPGTGEAPAAPVFIDGE KALTLRGDNIAREFQDIVNDYIAKRFGAGADA" misc_feature 1486851..1488050 /locus_tag="Alide2_1411" /note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed; Region: ispG; PRK00366" /db_xref="CDD:178989" misc_feature 1486851..1488029 /locus_tag="Alide2_1411" /note="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Region: ispG_gcpE; TIGR00612" /db_xref="CDD:188068" gene 1488158..1489447 /locus_tag="Alide2_1412" /db_xref="GeneID:10482440" CDS 1488158..1489447 /locus_tag="Alide2_1412" /EC_number="6.1.1.21" /inference="protein motif:HAMAP:MF_00127" /note="PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: dia:Dtpsy_1091 histidyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="histidyl-tRNA synthetase" /protein_id="YP_004387328.1" /db_xref="GI:330824025" /db_xref="InterPro:IPR002314" /db_xref="InterPro:IPR004154" /db_xref="InterPro:IPR015807" /db_xref="GeneID:10482440" /translation="MQKLVAIKGMNDILPPESARWEWLEDTVRTLMARYAYRNIRTPI VEPTPLFVRGLGEVTDIVEKEMYSFEDRLNGEQLTLRPEATAGVVRAVVEHSMLYDGG KRLYYMGPMFRHERPQRGRYRQFHQIGAEALGFPGAEADAEIILLAHALWAELGLKDV RLELNSLGQPDERRAHRAALIAHLEQHQDELDEDARRRLHSNPLRILDTKNPAMQAVV EAAPRLIDFLGEASLKHFETVKAILDANGVAWSLNPRLVRGMDYYNLTVFEFVTDQLG SQGTICGGGRYDYLIEQIGGKPAPAVGWALGVERVLELIKEQEAQAPRPVADAYAIVP DASALPVVMAALQRLRALGVSVQMHSPTAAGEGMGSMKSQFKKADASGSRFALVFGAD EMARGAVTIKPLRDGGEQVERPLATLADWAASLQSPR" misc_feature 1488158..1489432 /locus_tag="Alide2_1412" /note="histidyl-tRNA synthetase; Reviewed; Region: hisS; PRK00037" /db_xref="CDD:178812" misc_feature 1488206..1489105 /locus_tag="Alide2_1412" /note="Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: HisRS-like_core; cd00773" /db_xref="CDD:73226" misc_feature order(1488221..1488223,1488257..1488259,1488272..1488292, 1488362..1488367,1488404..1488406,1488410..1488412, 1488425..1488430,1488437..1488442,1488524..1488529, 1488548..1488550,1488572..1488574,1488584..1488586, 1488593..1488595,1489010..1489012,1489064..1489069) /locus_tag="Alide2_1412" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73226" misc_feature 1488266..1488292 /locus_tag="Alide2_1412" /note="motif 1; other site" /db_xref="CDD:73226" misc_feature order(1488404..1488406,1488410..1488412,1488494..1488496, 1488500..1488502,1488521..1488523,1488530..1488532, 1488536..1488538,1488548..1488550,1488929..1488931, 1488935..1488937,1488941..1488946,1488995..1488997, 1489010..1489012,1489067..1489069,1489076..1489078, 1489085..1489087) /locus_tag="Alide2_1412" /note="active site" /db_xref="CDD:73226" misc_feature 1488491..1488505 /locus_tag="Alide2_1412" /note="motif 2; other site" /db_xref="CDD:73226" misc_feature order(1489064..1489078,1489085..1489087) /locus_tag="Alide2_1412" /note="motif 3; other site" /db_xref="CDD:73226" misc_feature 1489136..1489417 /locus_tag="Alide2_1412" /note="HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859" /db_xref="CDD:29799" misc_feature order(1489157..1489162,1489283..1489285,1489301..1489303, 1489325..1489327,1489355..1489357,1489361..1489363) /locus_tag="Alide2_1412" /note="anticodon binding site; other site" /db_xref="CDD:29799" gene 1489463..1490143 /locus_tag="Alide2_1413" /db_xref="GeneID:10482441" CDS 1489463..1490143 /locus_tag="Alide2_1413" /inference="protein motif:PFAM:PF09976" /note="PFAM: Protein of unknown function DUF2133; KEGG: dia:Dtpsy_1092 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387329.1" /db_xref="GI:330824026" /db_xref="InterPro:IPR018704" /db_xref="GeneID:10482441" /translation="MANNFDLQEQEQLDELKHFWNTWGTPITWVLIIVLGGFAAWNGY QLWQSRQAQQATALVEAVELAAQSGDLARVEQAFGDLKSGYGGTIQAGQAGLLAAKAL ADAGKWDAAKGVLAWVAEKASDEGYMALARLRLAGVLIEEKAYDEALAQLSARFPSEF AGTVADRKGDVLALQDKKQEAIAEYRRAYQALDAGIEYRRLVEAKLNALGAQAEAVAS AAPAGGAQ" misc_feature 1489478..1490083 /locus_tag="Alide2_1413" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2976" /db_xref="CDD:32795" misc_feature 1489493..1489621 /locus_tag="Alide2_1413" /note="Uncharacterized protein conserved in bacteria (DUF2133); Region: DUF2133; pfam09976" /db_xref="CDD:192435" gene 1490140..1491288 /locus_tag="Alide2_1414" /db_xref="GeneID:10482442" CDS 1490140..1491288 /locus_tag="Alide2_1414" /inference="protein motif:TFAM:TIGR03300" /note="KEGG: dia:Dtpsy_1093 outer membrane assembly lipoprotein YfgL; TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat" /codon_start=1 /transl_table=11 /product="outer membrane assembly lipoprotein YfgL" /protein_id="YP_004387330.1" /db_xref="GI:330824027" /db_xref="InterPro:IPR002372" /db_xref="InterPro:IPR017687" /db_xref="InterPro:IPR018391" /db_xref="GeneID:10482442" /translation="MSAARRSCRALWGALALAGLLGVSGCSLWGGSSKPKPAELGPNV PVLGVRQAWTARIGAVEGVALDVHVNGNVVTLASANGEVAAIDARTGGDVWRTQLNMQ LASGVGSDGRWSAVVSRNAQVVVLDGAREIWRKSLPAQAYTAPLVAGHRVFVLAADRS ITAFDAATGYQLWRQQRPGEPLILREGGVLMAVGDTLVAGLSGRLVGFNPDNGVVRWE APLASPRGTNDVERLVEIVGRTSRVGDSVCARAFQATVGCIDAGRGTVLWTQPASGSE GIDGDGSMLFGTESNGTVAAWRRADGVRAWTSERLQFRKLTAPLLLGRSVVIGDDSGL VHLLSREDAAPLNRLTTDGSAIAASPVAAGDTLVVVTRKGGVYGFRPD" misc_feature 1490206..1491279 /locus_tag="Alide2_1414" /note="outer membrane assembly lipoprotein YfgL; Region: assembly_YfgL; TIGR03300" /db_xref="CDD:188303" misc_feature 1490383..>1490967 /locus_tag="Alide2_1414" /note="Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller; Region: PQQ_DH; cl11493" /db_xref="CDD:159495" misc_feature order(1490563..1490565,1490677..1490682,1490695..1490697, 1490812..1490814,1490866..1490877) /locus_tag="Alide2_1414" /note="active site" /db_xref="CDD:73185" gene 1491307..1492650 /locus_tag="Alide2_1415" /db_xref="GeneID:10482443" CDS 1491307..1492650 /locus_tag="Alide2_1415" /inference="protein motif:TFAM:TIGR03594" /note="KEGG: dia:Dtpsy_1094 GTP-binding protein EngA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related" /codon_start=1 /transl_table=11 /product="ribosome-associated GTPase EngA" /protein_id="YP_004387331.1" /db_xref="GI:330824028" /db_xref="GO:0005525" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR016484" /db_xref="GeneID:10482443" /translation="MKPVIALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGN GRQGKHEFIVIDTGGFEPDASSGIYREMAKQTQQAVAEADVVIFVVDVRGGLSAQDHD IAKYLRRLGKPCVLAGNKAEGMQDSAHLAEFYELGLGEVHPVSAAHGQGVRSLVELAL KSLALPEAGEGDVVAEANVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAI SVPFERNGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVT DQDAHIAGYILESGRAVVIAVNKWDAVDDYGRQQLERSIETRLSFLKFAPLHFISAMK RQGIGPLWASIVQAYKSANRKMPTPVLTRLLQEAVQFQSPKRSGMFRPKLRYAHQGGM NPPVIVIHGNSLEHVTDAYKRFLEGRFRKEFDLIGTPLRIELKSSSNPYADKHES" misc_feature 1491310..1492623 /locus_tag="Alide2_1415" /note="GTP-binding protein Der; Reviewed; Region: PRK00093" /db_xref="CDD:178858" misc_feature 1491322..1491795 /locus_tag="Alide2_1415" /note="EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that...; Region: EngA1; cd01894" /db_xref="CDD:133294" misc_feature 1491331..1491354 /locus_tag="Alide2_1415" /note="G1 box; other site" /db_xref="CDD:133294" misc_feature order(1491340..1491342,1491346..1491357,1491661..1491666, 1491670..1491672,1491739..1491747) /locus_tag="Alide2_1415" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133294" misc_feature order(1491385..1491405,1491415..1491426) /locus_tag="Alide2_1415" /note="Switch I region; other site" /db_xref="CDD:133294" misc_feature 1491415..1491417 /locus_tag="Alide2_1415" /note="G2 box; other site" /db_xref="CDD:133294" misc_feature order(1491469..1491486,1491550..1491555) /locus_tag="Alide2_1415" /note="Switch II region; other site" /db_xref="CDD:133294" misc_feature 1491472..1491483 /locus_tag="Alide2_1415" /note="G3 box; other site" /db_xref="CDD:133294" misc_feature 1491661..1491672 /locus_tag="Alide2_1415" /note="G4 box; other site" /db_xref="CDD:133294" misc_feature 1491739..1491747 /locus_tag="Alide2_1415" /note="G5 box; other site" /db_xref="CDD:133294" misc_feature 1491838..1492353 /locus_tag="Alide2_1415" /note="EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that...; Region: EngA2; cd01895" /db_xref="CDD:133295" misc_feature 1491862..1491885 /locus_tag="Alide2_1415" /note="G1 box; other site" /db_xref="CDD:133295" misc_feature order(1491871..1491873,1491877..1491888,1492198..1492203, 1492207..1492209,1492297..1492305) /locus_tag="Alide2_1415" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133295" misc_feature order(1491907..1491909,1491916..1491957) /locus_tag="Alide2_1415" /note="Switch I region; other site" /db_xref="CDD:133295" misc_feature 1491946..1491948 /locus_tag="Alide2_1415" /note="G2 box; other site" /db_xref="CDD:133295" misc_feature 1492003..1492014 /locus_tag="Alide2_1415" /note="G3 box; other site" /db_xref="CDD:133295" misc_feature order(1492012..1492017,1492087..1492092) /locus_tag="Alide2_1415" /note="Switch II region; other site" /db_xref="CDD:133295" misc_feature 1492198..1492209 /locus_tag="Alide2_1415" /note="G4 box; other site" /db_xref="CDD:133295" misc_feature 1492297..1492305 /locus_tag="Alide2_1415" /note="G5 box; other site" /db_xref="CDD:133295" gene 1492674..1492976 /locus_tag="Alide2_1416" /db_xref="GeneID:10482444" CDS 1492674..1492976 /locus_tag="Alide2_1416" /inference="protein motif:TFAM:TIGR02383" /note="KEGG: dia:Dtpsy_1095 RNA chaperone Hfq; TIGRFAM: Host factor Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain" /codon_start=1 /transl_table=11 /product="RNA chaperone Hfq" /protein_id="YP_004387332.1" /db_xref="GI:330824029" /db_xref="GO:0003723" /db_xref="InterPro:IPR001163" /db_xref="InterPro:IPR005001" /db_xref="GeneID:10482444" /translation="MTVVRCRFTTTFLNTENIVSNKGQLLQDPFLNALRREHVPVSIY LVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVNFSTAEAAEGDNQ" misc_feature 1492755..1492934 /locus_tag="Alide2_1416" /note="Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that...; Region: Hfq; cd01716" /db_xref="CDD:99753" misc_feature order(1492794..1492814,1492818..1492871) /locus_tag="Alide2_1416" /note="Sm1 motif; other site" /db_xref="CDD:99753" misc_feature order(1492806..1492817,1492848..1492850,1492878..1492880, 1492884..1492901,1492905..1492922) /locus_tag="Alide2_1416" /note="intra - hexamer interaction site; other site" /db_xref="CDD:99753" misc_feature 1492818..1492823 /locus_tag="Alide2_1416" /note="inter - hexamer interaction site [polypeptide binding]; other site" /db_xref="CDD:99753" misc_feature order(1492848..1492850,1492854..1492859,1492893..1492895) /locus_tag="Alide2_1416" /note="nucleotide binding pocket [chemical binding]; other site" /db_xref="CDD:99753" misc_feature 1492881..1492916 /locus_tag="Alide2_1416" /note="Sm2 motif; other site" /db_xref="CDD:99753" gene 1493041..1494219 /locus_tag="Alide2_1417" /db_xref="GeneID:10482445" CDS 1493041..1494219 /locus_tag="Alide2_1417" /inference="protein motif:TFAM:TIGR03156" /note="KEGG: ajs:Ajs_1176 small GTP-binding protein; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related" /codon_start=1 /transl_table=11 /product="GTP-binding proten HflX" /protein_id="YP_004387333.1" /db_xref="GI:330824030" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR016496" /db_xref="GeneID:10482445" /translation="MSSNPSSDTDFTPVLLVGVDFGLPHFDAELQELGLLAQTAGLKP VARLTCKRKAPDAALFVGSGKAGEIQTLAQMHGAKEVLFDQALSPAQQRNLERHLQMP VNDRTLLILEIFAQRARSHEGKLQVELARLQYLSTRLVRRWSHLERQRGGIGTRGGPG ETQIELDRRMIGEAIKRTRERLVKVKRQRATQRRQRERRDTFNISLVGYTNAGKSTLF NALVKARAYAADQLFATLDTTTRQLYLGEAVGSVSLSDTVGFIRDLPHGLVDAFQATL QEAVDADLLLHVVDAANPGYPEQIAQVQLVLAEIGAAEIPQLLVFNKFDAMPAETRPA RLQDMYELDGRQVPRIFVSARQGEGIPALRELLAHMVQEAAARDMTPGETAELPGPPG " misc_feature 1493080..1494153 /locus_tag="Alide2_1417" /note="GTP-binding protein HflX; Region: GTP_HflX; TIGR03156" /db_xref="CDD:163162" misc_feature 1493521..1494153 /locus_tag="Alide2_1417" /note="HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual...; Region: HflX; cd01878" /db_xref="CDD:133279" misc_feature 1493662..1493685 /locus_tag="Alide2_1417" /note="G1 box; other site" /db_xref="CDD:133279" misc_feature order(1493671..1493673,1493677..1493688,1494004..1494009, 1494013..1494015,1494097..1494105) /locus_tag="Alide2_1417" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133279" misc_feature 1493725..1493766 /locus_tag="Alide2_1417" /note="Switch I region; other site" /db_xref="CDD:133279" misc_feature 1493755..1493757 /locus_tag="Alide2_1417" /note="G2 box; other site" /db_xref="CDD:133279" misc_feature 1493806..1493817 /locus_tag="Alide2_1417" /note="G3 box; other site" /db_xref="CDD:133279" misc_feature 1493815..1493886 /locus_tag="Alide2_1417" /note="Switch II region; other site" /db_xref="CDD:133279" misc_feature 1494004..1494015 /locus_tag="Alide2_1417" /note="G4 box; other site" /db_xref="CDD:133279" misc_feature 1494097..1494105 /locus_tag="Alide2_1417" /note="G5 box; other site" /db_xref="CDD:133279" gene 1494272..1495648 /locus_tag="Alide2_1418" /db_xref="GeneID:10482446" CDS 1494272..1495648 /locus_tag="Alide2_1418" /inference="protein motif:TFAM:TIGR01933" /note="TIGRFAM: HflK; PFAM: Band 7 protein; Protein HflK, N-terminal; KEGG: dia:Dtpsy_1097 HflK protein; SMART: Band 7 protein" /codon_start=1 /transl_table=11 /product="HflK protein" /protein_id="YP_004387334.1" /db_xref="GI:330824031" /db_xref="GO:0005515" /db_xref="InterPro:IPR001107" /db_xref="InterPro:IPR010201" /db_xref="InterPro:IPR020980" /db_xref="GeneID:10482446" /translation="MNLHNRASRWALLPERIRGMFNLNDPRWGRGDDKGEGGQRPEPE RPSTDQPQGGGRGRGQNSAGQPPDLDELWQDLNRKLGGLFGGRNGGGRGPTPGGGNGG GFQPDMKNAGVGVGLIAVIAVLIWLGTGFFIVQEGQQAVITQFGKYKSTVNAGFNWRL PYPIQRHELVFVTQIRSVDVGRDTIIKSTGLRESAMLTEDENIVEIKFAVQYRLNDAR AWLFESRNPADAVVQVAETAVREVVGKMRMDTALAEERDQIAPRVRNLMQTILDRYKI GVEVVGINLQQGGVRPPEQVQAAFDDVLKAGQERERAKNEAQAYANDVVPRAAGTASR LAEEAAAYKARVVAQAQGDTQRFSDILTEYQKAQQVTRDRMYIETMQQIYSNVTKVLV ESRQGSNLLYLPLDKIMQGVSQTPPAAVHEAPPAAGSGSVPPASSSQFQGDTRSRDAS RSRERESR" misc_feature 1494656..1495423 /locus_tag="Alide2_1418" /note="Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflK; cd03404" /db_xref="CDD:48216" misc_feature 1494662..1495489 /locus_tag="Alide2_1418" /note="HflK protein; Region: hflK; TIGR01933" /db_xref="CDD:130988" gene 1495658..1496572 /locus_tag="Alide2_1419" /db_xref="GeneID:10482447" CDS 1495658..1496572 /locus_tag="Alide2_1419" /inference="protein motif:TFAM:TIGR01932" /note="TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: ajs:Ajs_1178 HflC protein; SMART: Band 7 protein" /codon_start=1 /transl_table=11 /product="HflC protein" /protein_id="YP_004387335.1" /db_xref="GI:330824032" /db_xref="GO:0005515" /db_xref="GO:0008233" /db_xref="InterPro:IPR001107" /db_xref="InterPro:IPR010200" /db_xref="GeneID:10482447" /translation="MNRIGFIASTFLVLLALASSMMFVVDQRQFGVVYALGQIKDVLT EPGLYFKLPPPFQNVRYIDKRLLTLDSSDTESMLTAEKQRVVIDWYVRWRISDPSEYI RNVGLDENAGALQLNRVVRNAFQEEVNRRTVKELLSVKRDALMSDVKREVLEAVRGAK PWGVDVVDVRITRVDYVEAITESVYRRMEAERKRVANELRSTGAAEGEKIRADADRQR EIIIANAYRDAQKVKGEGDAETSRLYAQAFGRDPQFAQFYRSLEAYKASFNRKGDLVV LDPSSTEFFKAFRGAGVGTAAPASPRKP" misc_feature 1495658..1496515 /locus_tag="Alide2_1419" /note="FtsH protease regulator HflC; Provisional; Region: PRK11029" /db_xref="CDD:182913" sig_peptide 1495658..1495714 /locus_tag="Alide2_1419" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.765) with cleavage site probability 0.442 at residue 19" misc_feature 1495721..1496461 /locus_tag="Alide2_1419" /note="Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflC; cd03405" /db_xref="CDD:48217" gene 1496601..1496789 /locus_tag="Alide2_1420" /db_xref="GeneID:10482448" CDS 1496601..1496789 /locus_tag="Alide2_1420" /inference="protein motif:PFAM:PF09838" /note="PFAM: Protein of unknown function DUF2065; KEGG: ajs:Ajs_1179 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387336.1" /db_xref="GI:330824033" /db_xref="InterPro:IPR019201" /db_xref="GeneID:10482448" /translation="MDWEASFWAALGLVLVIEGLFPFVSPAGWRRMFMQILQLRDGQI RFCALLSIVAGGLVLLLL" misc_feature 1496619..1496786 /locus_tag="Alide2_1420" /note="Uncharacterized protein conserved in bacteria (DUF2065); Region: DUF2065; cl01275" /db_xref="CDD:154309" gene 1496864..1498012 /locus_tag="Alide2_1421" /db_xref="GeneID:10482449" CDS 1496864..1498012 /locus_tag="Alide2_1421" /inference="protein motif:TFAM:TIGR00443" /note="TIGRFAM: Histidyl-tRNA synthetase, class IIa, putative; KEGG: ajs:Ajs_1180 tRNA synthetase, class II (G, H, P and S)" /codon_start=1 /transl_table=11 /product="histidyl-tRNA synthetase 2" /protein_id="YP_004387337.1" /db_xref="GI:330824034" /db_xref="InterPro:IPR004517" /db_xref="GeneID:10482449" /translation="MSAWVLPDHIADVLPSEARHIEELRRGLLDTARSYGYELVMPPL LEHLDSLLTGTGEALDLQTFKLVDQLSGRSLGLRADTTQQVARIDAHLLNRRGVTRLC YCGPVLHTRPDRPHATREPLQFGAEIYGHPGIEADIEAVLLSLECLRSANVQDVSVDL ADVRIVRSLLAGLPVGLQTLARVHAALAAKDASELTFLARDFPANAREGLLALLQLYG DASVLDEAEIALKSISGVRQVLSDLRAIAARVQSARVTFDLADLRGYAYYSGARFAVY AQGASDALVRGGRYDEVGAVFGRNRPAAGFSLDVKQLVGVVSPRPLKAAIRAPWGEAP DVNAAIAALRQQGETVVCMLPGHGSEVDEFHCDRELVQVGGRWVVRAL" misc_feature 1496873..1498009 /locus_tag="Alide2_1421" /note="ATP phosphoribosyltransferase regulatory subunit; Provisional; Region: PRK12421" /db_xref="CDD:183520" misc_feature 1496912..1497814 /locus_tag="Alide2_1421" /note="Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: HisRS-like_core; cd00773" /db_xref="CDD:73226" misc_feature order(1496927..1496929,1496963..1496965,1496978..1496998, 1497059..1497064,1497101..1497103,1497107..1497109, 1497122..1497127,1497134..1497136,1497218..1497223, 1497242..1497244,1497266..1497268,1497278..1497280, 1497287..1497289,1497725..1497727,1497776..1497781) /locus_tag="Alide2_1421" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73226" misc_feature 1496972..1496998 /locus_tag="Alide2_1421" /note="motif 1; other site" /db_xref="CDD:73226" misc_feature order(1497101..1497103,1497107..1497109,1497194..1497196, 1497200..1497202,1497224..1497226,1497230..1497232, 1497242..1497244,1497650..1497652,1497656..1497658, 1497662..1497667,1497710..1497712,1497725..1497727, 1497779..1497781,1497788..1497790,1497797..1497799) /locus_tag="Alide2_1421" /note="active site" /db_xref="CDD:73226" misc_feature order(1497185..1497187,1497194..1497205) /locus_tag="Alide2_1421" /note="motif 2; other site" /db_xref="CDD:73226" misc_feature order(1497776..1497790,1497797..1497799) /locus_tag="Alide2_1421" /note="motif 3; other site" /db_xref="CDD:73226" gene 1498040..1499416 /locus_tag="Alide2_1422" /db_xref="GeneID:10482450" CDS 1498040..1499416 /locus_tag="Alide2_1422" /EC_number="6.3.4.4" /inference="protein motif:TFAM:TIGR00184" /note="SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: dia:Dtpsy_1101 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase" /codon_start=1 /transl_table=11 /product="adenylosuccinate synthetase" /protein_id="YP_004387338.1" /db_xref="GI:330824035" /db_xref="GO:0000287" /db_xref="GO:0004019" /db_xref="GO:0005525" /db_xref="InterPro:IPR001114" /db_xref="GeneID:10482450" /translation="MKASKGRNVVVVGTQWGDEGKGKLVDWLTESAQGVVRFQGGHNA GHTLVINGVKTALHLIPSGIMRPGVKCYIGNGVVLSAAKLFEEIEGLEKAGVEVRSRL RISEACPLILPFHAALDVAREAAREHGGAEKIGTTGRGIGPAYEDKVARRALRVQDLK YPERFAAKLRELLALHNHVLTTFLGSGSFQFSDALKPYIKDGQVQFEPVFAEAMRHAE MLKPMMADVSRELNEAHAVGANLLFEGAQGTLLDVDHGTYPYVTSSNCVAGNAAAGSG VGPGQLHYILGITKAYCTRVGGGPFPTELDWETPGTPGYHMSTVGAEKGVTTGRSRRC GWFDAALLKRSAQVNGLSGLCITKLDVLDGLPELLLCVGYELDGERLDLLPMGAEEIA RCQPIYEKMGGWTQSTVGVTRYDDLPANARLYLERIEQVTGVPIAMVSTSPDRDHTIL MHNPYAVA" misc_feature 1498055..1499407 /locus_tag="Alide2_1422" /note="adenylosuccinate synthetase; Provisional; Region: PRK01117" /db_xref="CDD:179227" misc_feature 1498061..>1498516 /locus_tag="Alide2_1422" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" misc_feature <1498715..1499368 /locus_tag="Alide2_1422" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene 1499488..1500012 /locus_tag="Alide2_1423" /db_xref="GeneID:10482451" CDS 1499488..1500012 /locus_tag="Alide2_1423" /inference="protein motif:PFAM:PF00156" /note="PFAM: Phosphoribosyltransferase; KEGG: ajs:Ajs_1182 phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="phosphoribosyltransferase" /protein_id="YP_004387339.1" /db_xref="GI:330824036" /db_xref="InterPro:IPR000836" /db_xref="GeneID:10482451" /translation="MLTEDGKHLYVSYDEYHSLIEKLALKVHQSGWEFDTILCLARGG LRPGDILSRIFDKPLAIMSTSSYRAEAGTVQGHLDLARFITTPKGEIAGRVLLVDDLA DSGHTLNAVVRMLRTNYTPITELRSAVIWTKGMSAFTPDYSVEFLPTNPWIHQPFEGY DSLTPDKLVEKWRW" misc_feature 1499506..1500003 /locus_tag="Alide2_1423" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 1500507..1502023 /locus_tag="Alide2_R0015" /db_xref="GeneID:10482452" rRNA 1500507..1502023 /locus_tag="Alide2_R0015" /product="16S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al, Nucleic Acids Res. Apr 22, 2007" /db_xref="GeneID:10482452" gene 1502128..1502204 /locus_tag="Alide2_R0016" /note="tRNA-Ile1" /db_xref="GeneID:10482453" tRNA 1502128..1502204 /locus_tag="Alide2_R0016" /product="tRNA-Ile" /db_xref="GeneID:10482453" gene 1502235..1502310 /locus_tag="Alide2_R0017" /note="tRNA-Ala1" /db_xref="GeneID:10482454" tRNA 1502235..1502310 /locus_tag="Alide2_R0017" /product="tRNA-Ala" /db_xref="GeneID:10482454" gene 1502672..1505548 /locus_tag="Alide2_R0018" /db_xref="GeneID:10482455" rRNA 1502672..1505548 /locus_tag="Alide2_R0018" /product="23S ribosomal RNA" /note="RNAmmer 1.2, Lagesen et al, Nucleic Acids Res. Apr 22, 2007" /db_xref="GeneID:10482455" gene 1505665..1505777 /locus_tag="Alide2_R0019" /db_xref="GeneID:10482456" rRNA 1505665..1505777 /locus_tag="Alide2_R0019" /product="5S ribosomal RNA" /note="5S ribosomal RNA as predicted by Rfam (RF00001), score 84.63" /db_xref="GeneID:10482456" gene 1505864..1506601 /locus_tag="Alide2_1424" /db_xref="GeneID:10482457" CDS 1505864..1506601 /locus_tag="Alide2_1424" /inference="protein motif:TFAM:TIGR00093" /note="KEGG: ajs:Ajs_1183 ribosomal small subunit pseudouridine synthase A; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F" /codon_start=1 /transl_table=11 /product="pseudouridine synthase Rsu" /protein_id="YP_004387340.1" /db_xref="GI:330824037" /db_xref="GO:0003723" /db_xref="GO:0016866" /db_xref="InterPro:IPR000748" /db_xref="InterPro:IPR006145" /db_xref="GeneID:10482457" /translation="MQLQDILYSQGFGTRRICAGLIQQGWVAVHSAGSLEPVVCLEPA QNLKEQGLVLRVQGQDWPYHAKAYVMLNKPAGTECSQKPSAYPSVYTLLPAPLRQRPG KSAVSGVQAVGRLDQDTTGLLLLSDDGQFIHRMSSPKKHVPKVYQVTVRHPVDAAQVE CLLAGVVLDDDPKPVRAVACVQRDAHRIDLTLTEGKYHQVKRMIAAVGNRVEALHRAR IGGLELPADMAPGQWRWLGLDELALLK" misc_feature 1505864..1506598 /locus_tag="Alide2_1424" /note="16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187" /db_xref="CDD:31380" misc_feature 1506062..1506586 /locus_tag="Alide2_1424" /note="PseudoU_synth_RsuA: Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA...; Region: PseudoU_synth_RsuA; cd02553" /db_xref="CDD:30010" misc_feature order(1506200..1506211,1506464..1506466) /locus_tag="Alide2_1424" /note="active site" /db_xref="CDD:30010" misc_feature order(1506299..1506301,1506455..1506466) /locus_tag="Alide2_1424" /note="uracil binding [chemical binding]; other site" /db_xref="CDD:30010" gene 1506709..1507674 /locus_tag="Alide2_1425" /db_xref="GeneID:10482458" CDS 1506709..1507674 /locus_tag="Alide2_1425" /inference="similar to AA sequence:KEGG:Dtpsy_1104" /note="KEGG: dia:Dtpsy_1104 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387341.1" /db_xref="GI:330824038" /db_xref="GeneID:10482458" /translation="MGRMAGVLVAACLALGAQAAEPPVFVLNSLQADISVIDPVTWTE TARIATGKEPHHLYLTPDEKSLIVANALGDSLTFVDPGTAQVQRTVRGIVDPYHLRFS PDMQWLVTAANRLNHVDFYRWDGKEPTLVQRVATGKTPSHLWIDSASRTVYSTMQDSD ELVAIDIATQKIKWRTGTGAMPADVYGSPDGRNLFVGLTGSDSVEVFDISGEQPRSVQ RIKTGSGAHAFRAAGDGRHLFVSNRVANTISKIDMQALRVVDSYPAPGGPDCMDVSAD GRWIYVSARWARKMLVIDTVERKVARAINVGKSPHGVWTLRHAKR" sig_peptide 1506709..1506768 /locus_tag="Alide2_1425" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 20" misc_feature <1506772..1507515 /locus_tag="Alide2_1425" /note="Uncharacterized conserved protein [Function unknown]; Region: COG3391" /db_xref="CDD:33198" gene 1507688..1508491 /locus_tag="Alide2_1426" /db_xref="GeneID:10482459" CDS 1507688..1508491 /locus_tag="Alide2_1426" /inference="protein motif:PFAM:PF01522" /note="KEGG: dia:Dtpsy_1105 polysaccharide deacetylase; manually curated; PFAM: Polysaccharide deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_004387342.1" /db_xref="GI:330824039" /db_xref="GO:0005525" /db_xref="InterPro:IPR002509" /db_xref="GeneID:10482459" /translation="MQSLRGVLRAIFLIAASTSPLGASAQNNAQGSCNGTVYLTFDTG HMGVAPLVAEVLQRQRVQVTFFAADERTQSGGSSLDEQWAPWWRARAAEGHEFASHTL HHVYWRADEGAGLKVRPSTGPQAGKDLSMTAEQYCAEIDGAANRLRAMTGKEPLPLFR APGGKTSPRLLEAAQSCGYMHVGWTPAGFLGDELPSERYANRMLLEQALRTIRDGDIL LAHLGIWSRKDPWAPAVLEPLIKGLKERGLCFRTLREHPVYGTKALNRK" sig_peptide 1507688..1507765 /locus_tag="Alide2_1426" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.947 at residue 26" misc_feature 1507775..1508224 /locus_tag="Alide2_1426" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene 1508533..1509531 /locus_tag="Alide2_1427" /db_xref="GeneID:10482460" CDS 1508533..1509531 /locus_tag="Alide2_1427" /inference="protein motif:PFAM:PF04116" /note="PFAM: Fatty acid hydroxylase; KEGG: dia:Dtpsy_1106 fatty acid hydroxylase" /codon_start=1 /transl_table=11 /product="fatty acid hydroxylase" /protein_id="YP_004387343.1" /db_xref="GI:330824040" /db_xref="GO:0005506" /db_xref="GO:0016491" /db_xref="InterPro:IPR006694" /db_xref="GeneID:10482460" /translation="MVNSMSLPSQLFDAAQQWLFEAVVQPALFALGLANVLEDAYVAT GWLLVGLLQLLVMLALIGPLERWRPVEPLQDRAAVRVDVIYTLIHRLGLFRLALFFMA EPLWDGLFGMLRTHGWRTFQLDALWPGVTDQPLASLLLYLLVFDFVDYWIHRGQHRFG WWWRLHALHHSQRQMTMWSDSRNHLLDDLLRDAIIVVVAQCIGVAPGQFVAIVALTQL SENLHHANLRLWFGHLGERLWVSPRFHRLHHAIGTGHESAPAQRTGAPVLGGHNFGVL LPWWDMLFGTANFECRYDPTGVRDQVEPGPDGRVRDYGRGFWAQQWRGLLRLAGRG" misc_feature <1508983..1509504 /locus_tag="Alide2_1427" /note="Fatty acid hydroxylase superfamily; Region: FA_hydroxylase; cl01132" /db_xref="CDD:194046" gene 1509559..1510452 /locus_tag="Alide2_1428" /db_xref="GeneID:10482461" CDS 1509559..1510452 /locus_tag="Alide2_1428" /inference="protein motif:PFAM:PF04401" /note="PFAM: Uncharacterised protein family CysZ; KEGG: dia:Dtpsy_1107 putative transmembrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387344.1" /db_xref="GI:330824041" /db_xref="InterPro:IPR007496" /db_xref="GeneID:10482461" /translation="MGPFLDSFWRAAAYCLMPRVVALSLLPLLLITLAAWGGGHFYWQ PAVAWMQAALEGSSWLGLLWGWLGHFGVDNLPVVLAPLLVLMLATPVVVIVCVLAVAV LMAPAIVSLVAERRFAELQRKRGGSFLVSVLWSLGSTIAALLALVVSMPLWLVPPLVL VLPPLIWGWLTYRVMAFDALAEHASRPERQEIFKRYRLSLLTIGVLCGFLGAAPGIVW ASGVVFAAAFFVLVPIAIWIYTLVFAFSSLWFTHFCLAALQRLREQGGGDPSAPLAAP AIPASPPPALAPPPSPDSHPA" gene 1510449..1511270 /locus_tag="Alide2_1429" /db_xref="GeneID:10482462" CDS 1510449..1511270 /locus_tag="Alide2_1429" /inference="protein motif:PFAM:PF00994" /note="KEGG: ajs:Ajs_1188 molybdopterin binding domain-containing protein; PFAM: Molybdopterin binding; SMART: Molybdopterin binding" /codon_start=1 /transl_table=11 /product="molybdopterin binding domain-containing protein" /protein_id="YP_004387345.1" /db_xref="GI:330824042" /db_xref="InterPro:IPR001453" /db_xref="GeneID:10482462" /translation="MIPSFGLIIVGDEILSGKRADKHLPKVIELLAARGLALAYADYV GDDRPRITAALQRAFASGDVVFSCGGIGATPDDHTRQCAAAALQRPLALHPEAAALIR ERMQDVAREQGEAFDPDRSDNVHRLNMGVFPEGARIIPNPYNKIPGFSCDGPGGGTVH FMPGFPVMAWPMVEWALDHYCAQWFNRQPQTEHSIVLYGAMEAALTPLMECIETAHPG IKVFSLPSVDHPVHGRHVELGVKGPTALIPAAWRELYQILHQYGANMGPEMVRNI" misc_feature 1510458..1511216 /locus_tag="Alide2_1429" /note="Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Region: CinA; COG1058" /db_xref="CDD:31258" misc_feature 1510458..1511000 /locus_tag="Alide2_1429" /note="Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of...; Region: cinA; cd00885" /db_xref="CDD:58166" misc_feature order(1510656..1510664,1510935..1510940,1510950..1510952, 1510959..1510961) /locus_tag="Alide2_1429" /note="putative MPT binding site; other site" /db_xref="CDD:58166" gene 1511442..1512857 /locus_tag="Alide2_1430" /db_xref="GeneID:10482463" CDS 1511442..1512857 /locus_tag="Alide2_1430" /EC_number="6.3.1.2" /inference="protein motif:TFAM:TIGR00653" /note="TIGRFAM: Glutamine synthetase type I; KEGG: aav:Aave_1442 L-glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp" /codon_start=1 /transl_table=11 /product="glutamine synthetase, type I" /protein_id="YP_004387346.1" /db_xref="GI:330824043" /db_xref="GO:0004356" /db_xref="InterPro:IPR004809" /db_xref="InterPro:IPR008146" /db_xref="InterPro:IPR008147" /db_xref="GeneID:10482463" /translation="MAKTVADVMKMVEENEVKFVDLRFTDTRGKEQHVTVPVSHFDED KFTSGHAFDGSSVAGWKGIEASDMQLMPDPSTANIDPFFEETTLFLQCDVVEPGDGKA YDRDPRSIAKRAEAYLKASGLGDTAYFGPEPEFFIFDGVRWSNEPGKVFFEIEEYEAP WNSGTKFDGGNRGHRPTTKGGYFPVPPVDSTQDMRAEMVLILEQLGIPVEVFHHEVAG AGQNEIGTKFSTLVERADWTQVMKYVIWNVANAYGKTATFMPKPYAGDNGSGMHVHQS IWKDGKNLFAGDGYAGLSDFALYYIGGIIKHARALNAITNPGTNSYKRLVPGFEAPVK LAYSSRNRSASIRIPYVANPKGRRIEARFPDPSSNPYLCFSALMMAGLDGVENKIHPG EAATKDLYHLPPEEDKLVPTVCHSLDQALEALDKDRGFLTKGGVFSDNMLDAYIELKM GEVQRFRMAPHPVEYDMYYSL" misc_feature 1511451..1512854 /locus_tag="Alide2_1430" /note="glutamine synthetase; Provisional; Region: glnA; PRK09469" /db_xref="CDD:181884" misc_feature 1511487..1511732 /locus_tag="Alide2_1430" /note="Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951" /db_xref="CDD:146534" misc_feature 1511751..1512584 /locus_tag="Alide2_1430" /note="Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120" /db_xref="CDD:189401" gene 1513031..1513519 /locus_tag="Alide2_1431" /db_xref="GeneID:10482464" CDS 1513031..1513519 /locus_tag="Alide2_1431" /inference="similar to AA sequence:KEGG:Dtpsy_1110" /note="KEGG: dia:Dtpsy_1110 putative signal peptide protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387347.1" /db_xref="GI:330824044" /db_xref="GeneID:10482464" /translation="MKHSLFALTVIAAMLQPAWAQDRIYRCGNEYTNNAAQAKERGCK LVEGGNVTVLQAPRPAAAAPSGGAGAGSPPANAPRVDAADQRARDADARAILEAELRK AEARLAELRKEYNDGYPQRSALEMRNPQGYIERTAELKSAVSRAEADVAGIKRELARL NK" sig_peptide 1513031..1513093 /locus_tag="Alide2_1431" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 21" gene 1513544..1514614 /locus_tag="Alide2_1432" /db_xref="GeneID:10482465" CDS 1513544..1514614 /locus_tag="Alide2_1432" /inference="protein motif:PFAM:PF02518" /note="manually curated; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1111 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase, nitrogen specific, NtrB" /protein_id="YP_004387348.1" /db_xref="GI:330824045" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="GeneID:10482465" /translation="MISAPRPAERYQALDLISTLVAVLHPDGAVVFVNAALEDALGLS RRMLEGTDFGALLTDPAILRKALAGARGRDFAALRFEAALRRPPQEPLPVHANVARAE PGSEVIVELWPLEAQARQDREERLREQAQAHKELIRNLAHEIKNPLGGIRGAAQLLQM ELPGPELAEYTQVIIHEADRLQGLVDRLLAPHRHPHQVGDVNIHEVCERVRSLVLAEY PQGLAVLRDYDTSIPEFRGDRAQLLQALLNIVQNAAQALAERIAAGDAQITLRTRVAR QVTFGRQRYRLALELHVIDNGPGVPEAIRERIFYPLVTGRDGGSGLGLTLAQTFVQRH QGLIDCDSEPGRTDFRILIPLP" misc_feature 1513574..1514608 /locus_tag="Alide2_1432" /note="Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852" /db_xref="CDD:33642" misc_feature 1513934..1514110 /locus_tag="Alide2_1432" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1513949..1513951,1513961..1513963,1513973..1513975, 1513982..1513984,1513994..1513996,1514003..1514005, 1514051..1514053,1514063..1514065,1514072..1514074, 1514084..1514086,1514093..1514095,1514105..1514107) /locus_tag="Alide2_1432" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1513967..1513969 /locus_tag="Alide2_1432" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1514267..1514602 /locus_tag="Alide2_1432" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1514285..1514287,1514297..1514299,1514306..1514308, 1514420..1514422,1514426..1514428,1514432..1514434, 1514438..1514443,1514504..1514515,1514561..1514563, 1514567..1514569,1514582..1514584,1514588..1514590) /locus_tag="Alide2_1432" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1514297..1514299 /locus_tag="Alide2_1432" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1514432..1514434,1514438..1514440,1514504..1514506, 1514510..1514512) /locus_tag="Alide2_1432" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1514656..1516095 /locus_tag="Alide2_1433" /db_xref="GeneID:10482466" CDS 1514656..1516095 /locus_tag="Alide2_1433" /inference="protein motif:TFAM:TIGR01818" /note="TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: dia:Dtpsy_1112 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Fis family nitrogen metabolism transcriptional regulator NtrC" /protein_id="YP_004387349.1" /db_xref="GI:330824046" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="GO:0005524" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002078" /db_xref="InterPro:IPR002197" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR010114" /db_xref="GeneID:10482466" /translation="MKPIWIVDDDPSIRFVLERALAREGLPTRSFTQAREVLDALAGV AAGGAAQQGPQVLVSDIRMPGDSGLQLLEQVRAQLPGLPVIVMTAYSDLDSAVSAFQG GAFEYLPKPFDVPKAVELIRRAVEESEREQVAEQQQADAPEMLGQAPAMQDVFRAIGR LSQSVVTVLVTGESGSGKELVARALHKHSPVAGGPFVAINTAAIPKDLLESELFGHER GAFTGAQTQRRGRFEQAEGGTLFLDEIGDMPFDLQTRLLRVLSDGQFYRVGGHAAVKS HVRVIAATHQDLEQRVRDGAFREDLFHRLNVIRLRLPALRERREDVPMLTRHFLQRSA RQLGVEPKRISDAALETLMRFAFPGNVRQLENICHWLTVMAPAQVISARDLPPEVLQA GAPVHAPAAAADEGWELALEREAQRLLQDGRPEVWEALARRFESRLIRTALQATHGRR MEAAQRLGIGRNTITRKIQELGLDAPDEV" misc_feature 1514665..1516068 /locus_tag="Alide2_1433" /note="nitrogen regulation protein NR(I); Region: ntrC; TIGR01818" /db_xref="CDD:162545" misc_feature 1514671..1515030 /locus_tag="Alide2_1433" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1514677..1514682,1514833..1514835,1514857..1514859, 1514917..1514919,1514974..1514976,1514983..1514988) /locus_tag="Alide2_1433" /note="active site" /db_xref="CDD:29071" misc_feature 1514833..1514835 /locus_tag="Alide2_1433" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1514842..1514847,1514851..1514859) /locus_tag="Alide2_1433" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1514983..1514991 /locus_tag="Alide2_1433" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1515091..1515579 /locus_tag="Alide2_1433" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1515169..1515192 /locus_tag="Alide2_1433" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1515172..1515195,1515382..1515384,1515508..1515510) /locus_tag="Alide2_1433" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1515370..1515387 /locus_tag="Alide2_1433" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1515565..1515567 /locus_tag="Alide2_1433" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1515949..1516068 /locus_tag="Alide2_1433" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(1516420..1517196) /locus_tag="Alide2_1434" /db_xref="GeneID:10482467" CDS complement(1516420..1517196) /locus_tag="Alide2_1434" /EC_number="3.1.11.2" /inference="protein motif:TFAM:TIGR00633" /note="TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_1114 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease III Xth" /protein_id="YP_004387350.1" /db_xref="GI:330824047" /db_xref="GO:0003677" /db_xref="GO:0004518" /db_xref="GO:0004519" /db_xref="InterPro:IPR000097" /db_xref="InterPro:IPR004808" /db_xref="InterPro:IPR005135" /db_xref="GeneID:10482467" /translation="MHLATWNINSLSVRLPQVLAWLVANPVDAIGLQELKLVDEKFPH DAFEAAGYHAVCFGQKTYNGVAIVSRTPPRDVVRNIPGHDDEQARVIAATLDVEGGPL RLVNCYFVNGQAPGTDKFAYKLQWLAALHDWLRAELAAHPRLVLVGDFNVAPEDRDSY DPVGLKDTIHHTVEERQHFRQLLELGLTDAFRMFEQPEKSYSWWDYRQLGFQKNRGLR IDHILVSEALRAGVTACRIDRAPRKNPQPSDHAPVVATLG" misc_feature complement(1516426..1517196) /locus_tag="Alide2_1434" /note="Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; Region: ExoIII-like_AP-endo; cd09086" /db_xref="CDD:197320" misc_feature complement(order(1516447..1516449,1516744..1516746, 1516750..1516752,1516864..1516866,1516873..1516875, 1517095..1517097,1517176..1517178)) /locus_tag="Alide2_1434" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197320" misc_feature complement(order(1516447..1516452,1516537..1516539, 1516744..1516746,1516750..1516752,1516873..1516875, 1517095..1517097,1517176..1517178)) /locus_tag="Alide2_1434" /note="putative catalytic site [active]" /db_xref="CDD:197320" misc_feature complement(order(1516447..1516449,1516456..1516461, 1516537..1516542,1516546..1516548,1516576..1516581, 1516588..1516590,1516744..1516746,1516750..1516752, 1516840..1516842,1516858..1516860,1516864..1516866, 1516873..1516875,1517014..1517019,1517095..1517097, 1517155..1517163,1517167..1517172)) /locus_tag="Alide2_1434" /note="active site" /db_xref="CDD:197320" misc_feature complement(order(1516447..1516452,1517095..1517097, 1517170..1517172)) /locus_tag="Alide2_1434" /note="metal binding site A [ion binding]; metal-binding site" /db_xref="CDD:197320" misc_feature complement(order(1516456..1516461,1516576..1516581, 1516840..1516842,1516858..1516860,1516864..1516866, 1516873..1516875,1517014..1517019,1517155..1517163, 1517167..1517172)) /locus_tag="Alide2_1434" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:197320" misc_feature complement(order(1516447..1516449,1516540..1516542, 1516546..1516548,1516588..1516590,1516744..1516746, 1516750..1516752,1516864..1516866,1516873..1516875)) /locus_tag="Alide2_1434" /note="putative AP binding site [nucleotide binding]; other site" /db_xref="CDD:197320" misc_feature complement(order(1516447..1516449,1516744..1516746, 1516750..1516752,1516873..1516875)) /locus_tag="Alide2_1434" /note="putative metal binding site B [ion binding]; other site" /db_xref="CDD:197320" gene complement(1517203..1517493) /locus_tag="Alide2_1435" /db_xref="GeneID:10482468" CDS complement(1517203..1517493) /locus_tag="Alide2_1435" /inference="similar to AA sequence:KEGG:Shewana3_1258" /note="KEGG: shn:Shewana3_1258 XRE family transcriptional regulator" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387351.1" /db_xref="GI:330824048" /db_xref="GeneID:10482468" /translation="MSTLARDLESPTIHKLTELCEMMEVHPLTLLALAYTENDPAKTD QLLARVSKEPGAIADMAGQTRPDLEETSLSQPGSHGCFPDPKITQNHLKSIT" gene 1517706..1519406 /locus_tag="Alide2_1436" /db_xref="GeneID:10482469" CDS 1517706..1519406 /locus_tag="Alide2_1436" /EC_number="3.6.3.12" /inference="protein motif:TFAM:TIGR00680" /note="TIGRFAM: ATPase, K+ transporting, A subunit; KEGG: pap:PSPA7_3712 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit" /codon_start=1 /transl_table=11 /product="potassium-transporting ATPase subunit A" /protein_id="YP_004387352.1" /db_xref="GI:330824049" /db_xref="GO:0008556" /db_xref="InterPro:IPR004623" /db_xref="GeneID:10482469" /translation="MVEPLLLLALLVVLGWPLGHYLAAVMRGDPMRSDVLFRWIERPL YALLGTRPEVGMGWCGYAKAFLLSNLVLALVVWAIFMTQAWLPLNPDGVPNMGWDLAL HTVVSFLTNTNQQHYAGQAQLSYLSQMTGIVGLQVVTPVMGLAVAAATLRGLFGGRQP QAQGQPVDVGNYWADVVRATLRFVLPLCLILSALLTWQGVPATLAGGPVAAPVEAGAQ FNVQKIPLGPVAPMVAIKQLGSNGGGWYGPNSAVPLENPTPLSNFLQTLAICLIPVSI VFMVGPFTGRRRFGAMVFGTMLAMSVLSTGLAVWSEGHSAIAADIALMEGKEVRLGSD ASALWAAVTTQVNNGSVNSMLDSAAPLTGMVAMADMLINAVWGGVGCGLQQFIVYLLL SVFLAGLMTGRTPELFGRKIEGPEVRLLAVLVLLQPLVVLGFTAVALAVPGLAGNSNP GFHGISQVFYEYVSAFANNGSGFEGLGDATVWWNLSCAIVLAAGRFPALVIPLAIAAM LAAKRRAPEGAGTLQVETPTFALVLIGIVIILTLLQFMPVLVLGPVADHLALASLLAR " misc_feature 1517766..1519391 /locus_tag="Alide2_1436" /note="K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]; Region: KdpA; cl00903" /db_xref="CDD:186248" misc_feature 1517766..1519385 /locus_tag="Alide2_1436" /note="Potassium-transporting ATPase A subunit; Region: KdpA; pfam03814" /db_xref="CDD:112618" gene 1519418..1521442 /locus_tag="Alide2_1437" /db_xref="GeneID:10482470" CDS 1519418..1521442 /locus_tag="Alide2_1437" /EC_number="3.6.3.4" /inference="protein motif:HAMAP:MF_00285" /note="PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: tgr:Tgr7_1888 potassium-transporting ATPase subunit B" /codon_start=1 /transl_table=11 /product="potassium-transporting ATPase subunit B" /protein_id="YP_004387353.1" /db_xref="GI:330824050" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006391" /db_xref="InterPro:IPR008250" /db_xref="GeneID:10482470" /translation="MSTTHAASSTRVGSSLKPALIGSFAKLAPRHAIQNPVMAVVWLG TVLTAVATIAGWTSTGFGWAVTAILFVTVLFANFAEAVAEARGRGQAASLRRARKDLV ARRLDKAGRENTVPAAELRPGDLVVVAEGQLVPADGEIVEGLATINEAAVTGESAPVL REAGTDRSGVIGGTKVLSDRIVVRVTAESGHSFLDRMIALVEGSVRQKTPNEIALGIL LAVMTLSFLIVVATLPFIGGFVGVRVDVVLLVALLVCLIPTTIGGLLPAIGIAGMNRA LRANVLAKSGKAVEVAGDVDVLLLDKTGTITYGDRQATAFHPLAGVNAAQLRQAALLA SLADSTPEGKSIVRLAREKGEKLVDPEQAHFVPFTAQTRMSGVDLPAGRVIRKGAMDA IVRHVAALEGHAPAELEARVHEVARKGATPLVVSDGRHVLGVVELSDVIKRGIKERFA RLREMGVKTVMITGDNPLTAASIAADAGVDDYIAEARPEDKLARIRAEQAGGRLVAMV GDGTNDAPALAQADVGLAMNSGTQAAKEAGNMVDLDSDPAKLLAVVEIGKQQLITRGA LTTFSLANDVSKYFAILPALFAASVPQMAALDVMRLSSPASAVLSALVFNALIIPALI PLALRGVRFRPASATELLRNNMLVYGVGGVLLPFIGIKLIDIVLSAMFNL" misc_feature 1519463..1521430 /locus_tag="Alide2_1437" /note="potassium-transporting ATPase subunit B; Provisional; Region: PRK01122" /db_xref="CDD:179229" misc_feature 1519619..1520287 /locus_tag="Alide2_1437" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature 1520672..1521067 /locus_tag="Alide2_1437" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 1521456..1522088 /locus_tag="Alide2_1438" /db_xref="GeneID:10482471" CDS 1521456..1522088 /locus_tag="Alide2_1438" /EC_number="3.6.3.12" /inference="protein motif:TFAM:TIGR00681" /note="TIGRFAM: Potassium transporting ATPase, C subunit; KEGG: pap:PSPA7_3714 K+-transporting ATPase subunit C; PFAM: Potassium transporting ATPase, C subunit" /codon_start=1 /transl_table=11 /product="potassium-transporting ATPase subunit C" /protein_id="YP_004387354.1" /db_xref="GI:330824051" /db_xref="GO:0008556" /db_xref="InterPro:IPR003820" /db_xref="GeneID:10482471" /translation="MANILPVSPARASSGTAPLADRGALRGAVVLAVVTLAGFGFLYS LAGVGIGQALFPQAADGSLVERGSRIVGSALVAQPFAGERYFQPRPSAAGYDTMALTG SNQARTNPDLRKRLEEARAAVAMREGVAPSAVPGDLYTQSGSGIDPHVSPQGAAIQVA RVARARGLARDAVERLVAGHTEGRQFGIFGAPRVNVLALNLALDALAASK" misc_feature 1521576..1522043 /locus_tag="Alide2_1438" /note="K+-transporting ATPase, c chain; Region: KdpC; cl00944" /db_xref="CDD:186274" gene 1522104..1524833 /locus_tag="Alide2_1439" /db_xref="GeneID:10482472" CDS 1522104..1524833 /locus_tag="Alide2_1439" /inference="protein motif:PFAM:PF02702" /note="KEGG: tgr:Tgr7_1885 sensor protein KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; ATPase-like, ATP-binding domain; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF" /codon_start=1 /transl_table=11 /product="Osmosensitive K channel His kinase sensor" /protein_id="YP_004387355.1" /db_xref="GI:330824052" /db_xref="GO:0000155" /db_xref="GO:0004673" /db_xref="GO:0005524" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR003852" /db_xref="InterPro:IPR006016" /db_xref="GeneID:10482472" /translation="MGAENTQQADALVGELRRQAAGRLTVFLGAAPGVGKTYAMLARA RELHRQGIDVVIGIVETHGRAETMALVEGLPQVPRRQVGYQGRMLDEMDLDGLLARRP AIALVDELAHRNAPGSRHERRWQDVQELLDAGIDVYTTVNVQHLESLNDVVHQITGIR VSETVPDAVFERLRDIRLVDLPARELIERLNQGKVYLPEQAAQALQAFFSPSNLTALR ELAMQTVAEHVDADLRETRTARGLADIAIQRHVLVAIDGRGQSEYLVRAGARIAERRG APWSVVSVDTGRSAGAALHAEDLERAAPGQARHSAAHAEQQRQRELDQAFALARSLGG ETEALHNTDVTQALLDAAAARGARSIVIGRTRERPVARIFNRTLTQQLLQRGARYELT IVSTPQARQRALRLQGLAGERLARGEPALIALATLGATAAAALAERFVGLEDLSTVFL IAVLLVASRTRMVAAAITAVLCFLAYDFLFIEPRFTFLISAQRGVATVLLFLAAALIA GRLASRLRMQVIALRAANTHATAMQNLARQLSKAADLGQVITASASVLQSTLNAQAWI RINGESGPAAAAQHLDEKDKAAAEWSQQHGQPSGRYTDTLAHCAWWFLPVHSDRETLG VVGLRFPAGMGRLPFEQRRLAESMTEDIGQAALRARLVSELEAARVTGETERLRSALL SSVSHDLRSPLSSMIGAADSLARYGQDMGAQDRGSLLETIRVEGERLDRYIQNLLDMT RLGQQGLALSRDWIGVDELVGSAVRRLQRYEPAVKVESSIDAGIGPVHVHPALIEQAI FNVLENAAKFSPPGEPIRVQALREEGGLLRIDISDRGPGIPEDERRRIFDMFYSVERG DRGKQGTGLGLTIVQGIVGAHMGRVEALPGPDGRGTTIRLTLPLGEPLPAQEG" misc_feature 1522131..1524818 /locus_tag="Alide2_1439" /note="Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]; Region: KdpD; COG2205" /db_xref="CDD:32387" misc_feature 1522167..1522790 /locus_tag="Alide2_1439" /note="Osmosensitive K+ channel His kinase sensor domain; Region: KdpD; pfam02702" /db_xref="CDD:145711" misc_feature 1522851..1523288 /locus_tag="Alide2_1439" /note="USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium...; Region: USP_OKCHK; cd01987" /db_xref="CDD:30174" misc_feature order(1522863..1522871,1522953..1522955,1523187..1523192, 1523196..1523201,1523229..1523240) /locus_tag="Alide2_1439" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30174" misc_feature 1524126..1524326 /locus_tag="Alide2_1439" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1524144..1524146,1524156..1524158,1524168..1524170, 1524177..1524179,1524189..1524191,1524198..1524200, 1524255..1524257,1524267..1524269,1524276..1524278, 1524288..1524290,1524297..1524299,1524309..1524311) /locus_tag="Alide2_1439" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1524162..1524164 /locus_tag="Alide2_1439" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1524483..1524797 /locus_tag="Alide2_1439" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1524501..1524503,1524513..1524515,1524522..1524524, 1524594..1524596,1524600..1524602,1524606..1524608, 1524612..1524617,1524693..1524704,1524750..1524752, 1524756..1524758,1524774..1524779,1524783..1524785) /locus_tag="Alide2_1439" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1524513..1524515 /locus_tag="Alide2_1439" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1524606..1524608,1524612..1524614,1524693..1524695, 1524699..1524701) /locus_tag="Alide2_1439" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1524838..1525548 /locus_tag="Alide2_1440" /db_xref="GeneID:10482473" CDS 1524838..1525548 /locus_tag="Alide2_1440" /inference="protein motif:PFAM:PF00072" /note="KEGG: tgr:Tgr7_1884 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal" /codon_start=1 /transl_table=11 /product="winged helix family two component transcriptional regulator" /protein_id="YP_004387356.1" /db_xref="GI:330824053" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10482473" /translation="MTHPPGGPAARVLVIDDEPQIRKFIDISLRSQGYATLLAETGLQ GLALLASQGADIVVLDLGLPDRDGKEVLEELRQWSRVPVIVLTVRSGEEEKVALLDAG ANDYVTKPFGIGELMARIRAFLRTTALSGEEGPVYDDGTLCIDLARRKVHLRGQAVAL TRKEFALLALLARQPGRLVTQTQLLREMWGPTHQEDAHYLRVLVGKLRHKLGDDASAP RYIVTEPGVGLRFVAQER" misc_feature 1524871..1525533 /locus_tag="Alide2_1440" /note="DNA-binding transcriptional activator KdpE; Provisional; Region: PRK10529" /db_xref="CDD:182522" misc_feature 1524874..1525209 /locus_tag="Alide2_1440" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1524883..1524888,1525015..1525017,1525039..1525041, 1525096..1525098,1525153..1525155,1525162..1525167) /locus_tag="Alide2_1440" /note="active site" /db_xref="CDD:29071" misc_feature 1525015..1525017 /locus_tag="Alide2_1440" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1525024..1525029,1525033..1525041) /locus_tag="Alide2_1440" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1525162..1525170 /locus_tag="Alide2_1440" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1525255..1525530 /locus_tag="Alide2_1440" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(1525318..1525320,1525375..1525380,1525432..1525434, 1525441..1525443,1525465..1525470,1525504..1525506, 1525519..1525521) /locus_tag="Alide2_1440" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 1525625..1526002 /locus_tag="Alide2_1441" /db_xref="GeneID:10482474" CDS 1525625..1526002 /locus_tag="Alide2_1441" /inference="similar to AA sequence:KEGG:pRL110581" /note="KEGG: rle:pRL110581 putative transposase-related protein" /codon_start=1 /transl_table=11 /product="putative transposase-like protein" /protein_id="YP_004387357.1" /db_xref="GI:330824054" /db_xref="GeneID:10482474" /translation="MTRPSRYELTDAQWQRLEELLPGKAGDPGRSGVDNRNFVNGVLW VLRSGARWSDLPERYGKYKTVHKRFTRWAAAGVWEQVFAMLVKDRGNAYLLIDSTIVR AHQQAATGKGGPRLRLWGVPEVV" misc_feature 1525640..1525987 /locus_tag="Alide2_1441" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3293" /db_xref="CDD:33102" gene 1525999..1526385 /locus_tag="Alide2_1442" /db_xref="GeneID:10482475" CDS 1525999..1526385 /locus_tag="Alide2_1442" /inference="protein motif:PFAM:PF01609" /note="PFAM: Transposase, IS4-like; KEGG: nwi:Nwi_1015 transposase, IS4" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_004387358.1" /db_xref="GI:330824055" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002559" /db_xref="GeneID:10482475" /translation="MSTKIHLANDGQGRPLRLILTPGQVNDITQAPELLRGFAPTHVL ADKGYDSRALVAQIEACGAQAVIPPRSCQQARPFDAKLYRARNAIERCFGRLKQYRRI ATRYDRKDAHFMAFLCLAASLTWVPD" misc_feature 1526005..1526373 /locus_tag="Alide2_1442" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3293" /db_xref="CDD:33102" gene 1526573..1527244 /locus_tag="Alide2_1443" /db_xref="GeneID:10482476" CDS 1526573..1527244 /locus_tag="Alide2_1443" /inference="protein motif:PFAM:PF11828" /note="PFAM: Protein of unknown function DUF3348; KEGG: vap:Vapar_3241 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387359.1" /db_xref="GI:330824056" /db_xref="InterPro:IPR021783" /db_xref="GeneID:10482476" /translation="MAQHTGRAGLTGTALVRLLAGMGDAPQRAGEPCAAFADGLVQWV GWTDAIALSAALERPAASTVNPQNRYAGEHAEYERVRATLAQAIGRESQAAGRSPLEA GMGFAPYRQCYVARQQAMGVALAALRERVRAALAACGPDAARLAAVDAVLAQALAVQE QRVFAAVPARLEKHFQRLCAAEAGPDAFRADLQAVLLAELELRLQPVEGLLEALRRHT PSGCT" misc_feature 1526573..1527217 /locus_tag="Alide2_1443" /note="Protein of unknown function (DUF3348); Region: DUF3348; pfam11828" /db_xref="CDD:152264" gene 1527241..1529979 /locus_tag="Alide2_1444" /db_xref="GeneID:10482477" CDS 1527241..1529979 /locus_tag="Alide2_1444" /inference="protein motif:PFAM:PF00691" /note="PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Domain of unknown function DUF802; KEGG: vap:Vapar_3240 protein of unknown function DUF802" /codon_start=1 /transl_table=11 /product="OmpA/MotB domain-containing protein" /protein_id="YP_004387360.1" /db_xref="GI:330824057" /db_xref="InterPro:IPR006665" /db_xref="InterPro:IPR008520" /db_xref="GeneID:10482477" /translation="MTKLFSLAAFAAGLATVGWVGAGYLQAQPLALAIIVLIAAFYLL GSWELLRFSRATEALAGALGALSQPPARLDDWLATLPAALRDAVRQRVEGARAGLPGP VLASYLSGLLVLLGMLGTFGGMVVALNGTGAALAGADGLDAMRDALSAPVRGLGLAFG TSVAGVAASAMLGLMTALCRRERIRAARQLDAAAAGPLRPFSSQHQREASLRLLEQQA GAMPQVVDRLQDCMAALERQQQALGERLAAEQRRFYSETEAAYTALAATVQRTLADTA AQSAAQAGAAIQPATEATLAALARESTRLQESMAQQVGRQLDAMAERFGEATIAVSTQ WTSALAEHRSTGEATAQALGDALARFTQGFEQRTTELATGLAQQLLHQSEAQAARWDE ALARQASEGAQLAERQQQALQAATDGLARHAAALQVSVDQAHEGLQTRLAAQEEQRLA RWTQALQSVAATLVDEWRQAGAQAAAQHQQTGDALARAADDIARHMQAQAQGTLDEVQ RLVHAAAEAPRAAAQAMGELRQQITDSIARDNAMLDERARLLETLSTLLGAAGRAADE QRSAIDALVAQAAGAMERAGGRVRRDARHAGGPPGRRGRAGRRRRHRGREPGRGLRRR GAALRPGQRADARAAAAHRGRHGQVARAQRRAARLLRGPGARGDRAERGCAKADHRRP AAGGRAACRGERGMTVHAGGELDDGLEPAAPVWAVFGDLMGGALGAFALILVCALGMQ MELAERLKTEQRQRAEQARRLTTLEQALAGPLAAGRVTLQDGRIGISGSVLFAFNSDE LQPEGRQLLRSLSAPLAAYLRERGEILMVSGFTDDRPMRGGGGNARFADNWELSAQRA LTVTRALIDEGIPSAQVFAAAFGAEQAVASNADAEGRARNRRVEMAPMPRPARRVQ" sig_peptide 1527241..1527324 /locus_tag="Alide2_1444" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.833) with cleavage site probability 0.829 at residue 28" misc_feature 1528201..1528353 /locus_tag="Alide2_1444" /note="Domain of unknown function (DUF802); Region: DUF802; pfam05650" /db_xref="CDD:191334" misc_feature 1529347..1529964 /locus_tag="Alide2_1444" /note="hypothetical protein; Provisional; Region: PRK09040" /db_xref="CDD:181620" misc_feature 1529605..1529940 /locus_tag="Alide2_1444" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature order(1529620..1529625,1529731..1529736,1529767..1529769, 1529779..1529784,1529791..1529793,1529917..1529919, 1529929..1529931) /locus_tag="Alide2_1444" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene 1530014..1530545 /locus_tag="Alide2_1445" /pseudo /db_xref="GeneID:10482478" gene complement(1530511..1531005) /locus_tag="Alide2_1446" /db_xref="GeneID:10482479" CDS complement(1530511..1531005) /locus_tag="Alide2_1446" /EC_number="1.5.1.3" /inference="protein motif:PRIAM:1.5.1.3" /note="KEGG: dia:Dtpsy_1115 dihydrofolate reductase; PFAM: Dihydrofolate reductase domain" /codon_start=1 /transl_table=11 /product="dihydrofolate reductase" /protein_id="YP_004387361.1" /db_xref="GI:330824058" /db_xref="InterPro:IPR001796" /db_xref="GeneID:10482479" /translation="MNVHLIYARAANGVIGKDGAMPWHLPEDLAHFKRLTQGHPVIMG RKTWDSLPARFRPLPGRANIVVTRQADWNEIGAQRASSLREALSVAEQTGSEAWIIGG AQIYAQALPLATRIEVTEIGRDFDGDAHAPQLGPEWQEVARSRHVGSGGLPFSFVTYE RRPG" misc_feature complement(1530526..1530999) /locus_tag="Alide2_1446" /note="Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-...; Region: DHFR; cd00209" /db_xref="CDD:29264" misc_feature complement(order(1530649..1530651,1530688..1530690, 1530706..1530708,1530823..1530825,1530922..1530924, 1530937..1530939,1530988..1530990)) /locus_tag="Alide2_1446" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:29264" misc_feature complement(order(1530694..1530705,1530802..1530804, 1530865..1530873,1530961..1530963,1530982..1530984)) /locus_tag="Alide2_1446" /note="NADP+ binding site [chemical binding]; other site" /db_xref="CDD:29264" gene complement(1531002..1531817) /locus_tag="Alide2_1447" /db_xref="GeneID:10482480" CDS complement(1531002..1531817) /locus_tag="Alide2_1447" /EC_number="2.1.1.45" /inference="protein motif:TFAM:TIGR03284" /note="TIGRFAM: Thymidylate synthase; KEGG: ajs:Ajs_1197 thymidylate synthase; PFAM: Thymidylate synthase" /codon_start=1 /transl_table=11 /product="thymidylate synthase" /protein_id="YP_004387362.1" /db_xref="GI:330824059" /db_xref="GO:0004799" /db_xref="InterPro:IPR000398" /db_xref="GeneID:10482480" /translation="MTHRPIRHQYEDLMRHVFEHGVAKGDRTGTGTRSVFGHQMRFDL REGFPLVTTKKVHLKSIILELLWFLQGSGNARWLQERGVTIWDEWADPTSGDLGPVYG VQWRSWPTPGGGHIDQISQVVEQLRTNPDSRRIIVSAWNVAELDKMALMPCHAFFQFY VAEGRLSCQLYQRSADIFLGVPFNIASYALLTHMLAQQCDLEVGDFIWTGGDCHIYSN HFEQVRTQLAREPRPYPTLRIKRRPPSIFDYGYEDFEVEGYDPHPPIKAPVAV" misc_feature complement(1531146..1531793) /locus_tag="Alide2_1447" /note="Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the...; Region: TS_Pyrimidine_HMase; cd00351" /db_xref="CDD:58645" misc_feature complement(order(1531182..1531187,1531296..1531301, 1531305..1531307,1531332..1531334,1531344..1531346, 1531350..1531352,1531392..1531397,1531416..1531421, 1531710..1531712,1531716..1531718,1531740..1531742, 1531752..1531754)) /locus_tag="Alide2_1447" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:58645" misc_feature complement(order(1531170..1531172,1531176..1531178, 1531266..1531271,1531290..1531292,1531296..1531304, 1531356..1531361,1531515..1531517,1531551..1531553, 1531560..1531562,1531626..1531628,1531737..1531739)) /locus_tag="Alide2_1447" /note="active site" /db_xref="CDD:58645" gene complement(1531870..1533294) /locus_tag="Alide2_1448" /db_xref="GeneID:10482481" CDS complement(1531870..1533294) /locus_tag="Alide2_1448" /EC_number="1.1.2.4" /inference="protein motif:PRIAM:1.1.2.4" /note="KEGG: dia:Dtpsy_1117 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal" /codon_start=1 /transl_table=11 /product="D-lactate dehydrogenase (cytochrome)" /protein_id="YP_004387363.1" /db_xref="GI:330824060" /db_xref="InterPro:IPR004113" /db_xref="InterPro:IPR006094" /db_xref="GeneID:10482481" /translation="MTTALLDSLRQIVGAAHVLTDGDLTAYEQDWRKRVKGKALAVVR PASTAEVAAVVKACAAAGSPMVPQGGNTGLSVGSTPDGSGTQVVLSLTRMNQVRAIDR DNLTMTVEAGCILQSLQETADKEGLLFPLSLAAEGSCTIGGNLGTNAGGTQVVRYGNT RELCLGLEVVTPQGEVWDGLSGLRKDNTGYDLRDLFIGSEGTLGVITAATMKLFPQPA ARLTAWAAVPSMQAAVRLLGLAHQHLGAGLTGFEVMGRFALSLVIKHMPQLRVPFAGL DGAPPYYVLLENSDSESEEHARERFEALLEFAFEDGCVLDAVVAESLSQAHELWHIRE SIPLAQAEEGLNIKHDISIAASRIPAFVEHTDALLQREIPGVRLVNFGHLGDGNLHYN VQAPEGGDAREFLRTQEDRVNQLVYDAVALFHGSFSAEHGVGVLKADKLAHYKSPVAL SMMRAIKQALDPQGLMNPGCILQK" misc_feature complement(1531879..1533273) /locus_tag="Alide2_1448" /note="FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277" /db_xref="CDD:30625" misc_feature complement(1532767..1533180) /locus_tag="Alide2_1448" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene complement(1533291..1533719) /locus_tag="Alide2_1449" /db_xref="GeneID:10482482" CDS complement(1533291..1533719) /locus_tag="Alide2_1449" /inference="protein motif:PFAM:PF09842" /note="PFAM: Protein of unknown function DUF2069, membrane; KEGG: dia:Dtpsy_1118 membrane protein-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387364.1" /db_xref="GI:330824061" /db_xref="InterPro:IPR018643" /db_xref="GeneID:10482482" /translation="MHSEIVPLPPPVTTDVAATRWLAVGSLLGLIVLSLAWELWLAPL RPGGSWLALKALPLAVPLAGLLKRRMYTYRWVSLLVWLYFTEGVVRAWSDPAPGNWLA GAEIALCLLLFTACALHVRLRQRAVRTHTSTPPTPAADPT" misc_feature complement(1533342..1533611) /locus_tag="Alide2_1449" /note="Predicted membrane protein (DUF2069); Region: DUF2069; cl01299" /db_xref="CDD:154321" gene 1533741..1534994 /locus_tag="Alide2_1450" /db_xref="GeneID:10482483" CDS 1533741..1534994 /locus_tag="Alide2_1450" /inference="protein motif:TFAM:TIGR00765" /note="KEGG: dia:Dtpsy_1119 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related" /codon_start=1 /transl_table=11 /product="ribonuclease BN" /protein_id="YP_004387365.1" /db_xref="GI:330824062" /db_xref="GO:0004540" /db_xref="InterPro:IPR004664" /db_xref="InterPro:IPR017039" /db_xref="GeneID:10482483" /translation="MSLSPPLAQRIEAWIAQLSHFPWRTTAHMLRERFREDRLGLTAS SLTFTTLLALVPFFTVALAVFSAFPIFGQMQQVLQRWLVDSLVPDSISRPVLGYLTQF SAKASGLGMAGFSVLMVTALALILTIDRTLNTIWRVRRLRPLGQRVLIYWAAITLGPL VLAASLALTTSMASAASRGLGATLPGGTRLLLDSIEFLVLAAGVAAMYRYVPNTQVHW RYAWAGGLFVSVGMELAKKGLALYLASVPTYSVLYGTFATLPILLLWIYVAWVIVLLG AVVAAYLPSLLAGVARPAGGQGWTFLLAVEVLQQLHGARGQSAHGLTAAQLAQMLRVD VLQLEPVLDALMGLGWVVQVNETAAGAPGSADARHLLLADPATTAMEPLVQRLLLERT GPLERFWANTGLEVLKLADVLERPR" misc_feature 1533804..1534592 /locus_tag="Alide2_1450" /note="Ribonuclease BN-like family; Region: Ribonuclease_BN; cl07918" /db_xref="CDD:195647" gene complement(1535196..1537220) /locus_tag="Alide2_1451" /db_xref="GeneID:10482484" CDS complement(1535196..1537220) /locus_tag="Alide2_1451" /inference="protein motif:PFAM:PF11067" /note="PFAM: Protein of unknown function DUF2868; Protein of unknown function DUF3482; KEGG: pna:Pnap_2063 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387366.1" /db_xref="GI:330824063" /db_xref="InterPro:IPR021296" /db_xref="InterPro:IPR021871" /db_xref="GeneID:10482484" /translation="MHVSWQQLRSVTLAQAIEHADGERTLVSQTEWDEATRQAVEAAR GRGVQRVGVADVVLDRAAAIVARAAGRDATVAALQQPGAFTRWLARGLPLAALLLGLA LDRIANAHRVDLLSPPLLAVLGWNIAIYVLLLWRAWRRPGKERGLLAPLQHWVLRRQL PGGRAARRGLAARIAAGFYARWSALTLERFAQQAACVLHLCAAAWAAGIALSLLLRGL VVSYRFGWESTFLDAGQVHAIVSLLFAPLTLLFGLAPFSLADIAATQNFAGEGAAGSR WVWMYVGLLALVVVVPRLLLAAWAGWRQARLARQCTLDVQGSGFDTLRQALPGDLVLG LLCAAPAQEQALRTLLALHADHGAVASAQGDRLRLVQPEGAAAATPADAVVAWGDGPV PQAPPAWRQAPVLALGSTEFGPSWVQDGVLFERLAALLPAQRHALARLGQAWQARNEA LFTQSLQALAGHLHACAALVGAGQGAARYATLLQELDATLSDLHGHGAAALPSPMQLP PPASPTPPPQTRTGDGTALAMGTSAGAAAGAAAGAKVGALIDVGTGGMTLGVGTALGA LLGGTTAWALRTLQKKGEKKGDTDELLRHMTEAACTRYLVLSHLGRVPAQQADDLGAR WHAEVTGTVAAHWPQLTAALQAPAPPVDPLQPLLQAMLRGILQRSVARAA" misc_feature complement(<1536129..1536575) /locus_tag="Alide2_1451" /note="Protein of unknown function (DUF2868); Region: DUF2868; pfam11067" /db_xref="CDD:151512" gene complement(1537234..1538526) /locus_tag="Alide2_1452" /db_xref="GeneID:10482485" CDS complement(1537234..1538526) /locus_tag="Alide2_1452" /inference="protein motif:TFAM:TIGR03467" /note="KEGG: ajs:Ajs_1201 amine oxidase; TIGRFAM: Squalene-associated FAD-dependent desaturase; PFAM: Amine oxidase" /codon_start=1 /transl_table=11 /product="squalene-associated FAD-dependent desaturase" /protein_id="YP_004387367.1" /db_xref="GI:330824064" /db_xref="InterPro:IPR002937" /db_xref="InterPro:IPR017830" /db_xref="GeneID:10482485" /translation="MKVAVIGAGWGGMAAAVRAAQAGHGVTVFEASRTPGGRARAVAA TLSDGRPVVLDNGQHILVGAYAQCLGLMRTVGVRPEEALLRLPLTLVFPDGTGLRLPD APPPWDALMGIARARGWSACERLALLARAARWRLAGFRCAPGASVAELCAGLPPRLLD GFIEPLCVSALNTPARQACGQTFLRVLHDSLFSGRGGSHLLLPRTDLGALFPEPAAQW LRARGHAVHLGRRVQSLARDGAGWRVDDEPFHAVLLSTGSAEAARLVAGAATPAAEHT GLQAWAATAQALRFGAIATVYTEQSGAHGALLPLPMLALHHRGGRPAQFVFDRARLDG TAGLLAFVVSAFEGERARLEREVLAQATEDLRLPDLRVVQTVVEKRATFACTPALARP PRAIAPGLQACGDYVAGPYPATLEGAVLHGMAAAQNVI" sig_peptide complement(1538467..1538526) /locus_tag="Alide2_1452" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.666) with cleavage site probability 0.557 at residue 20" misc_feature complement(1537237..1538448) /locus_tag="Alide2_1452" /note="Flavin containing amine oxidoreductase; Region: Amino_oxidase; pfam01593" /db_xref="CDD:144982" misc_feature complement(1537237..1538448) /locus_tag="Alide2_1452" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 1538709..1540343 /locus_tag="Alide2_1453" /db_xref="GeneID:10482486" CDS 1538709..1540343 /locus_tag="Alide2_1453" /inference="protein motif:PFAM:PF00015" /note="KEGG: rfr:Rfer_3023 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis sensory transducer" /protein_id="YP_004387368.1" /db_xref="GI:330824065" /db_xref="GO:0004871" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR004089" /db_xref="GeneID:10482486" /translation="MWNNLRITQRFTVVLCMFWLLGASVIGVGLWGLSSARDNLKTLH DEAMHRALLADQVADLAVQSRMQVLLAFQHAPGSELASIHDHPVAFHLDAVLANMAKV DALQRDMEGAMEPKERALFEAAQAARAAWAAKLRQAAELIGKGDFSPASMAAFLAAGR AEGEAMVKALQAFRDHQVERAHGAYRAAQQRYEIGLLVFVLAILLLGVPASALGLLLL ARLSRGFHGANAAAAAIAAGDLTHRVEHQGTDEIAAMLAQMETMRGNLGRMIGQVSDG AEMIAGASSQVAVGTQDLSSRTEQQASALQETASATEQLSGTVQQNADSAAQASQLAA SATGVAQRGGAVVSQVVETMEAINMSSRKIVDIIGVIDGIAFQTNILALNAAVEAARA GEQGRGFAVVAGEVRSLAQRSAEAAREVKRLITDSVAKVDVGSGQVAQAGATMQEIVT GIQRVADIVDEIAHASREQSAGLSQINHAVAHLDGVTQQNAALVEQTSAASGALQEQA RQLASLAATFRLEQRAARPVAIAAGAPAGQQALAAA" misc_feature 1539522..1540265 /locus_tag="Alide2_1453" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 1539729..1540271 /locus_tag="Alide2_1453" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(1540375..1541214) /locus_tag="Alide2_1454" /db_xref="GeneID:10482487" CDS complement(1540375..1541214) /locus_tag="Alide2_1454" /EC_number="2.5.1.32" /inference="protein motif:TFAM:TIGR03465" /note="TIGRFAM: Squalene/phytoene synthase HpnD; KEGG: dia:Dtpsy_1121 squalene synthase HpnD; PFAM: Squalene/phytoene synthase" /codon_start=1 /transl_table=11 /product="squalene synthase HpnD" /protein_id="YP_004387369.1" /db_xref="GI:330824066" /db_xref="GO:0016767" /db_xref="InterPro:IPR002060" /db_xref="InterPro:IPR017828" /db_xref="GeneID:10482487" /translation="MNPDQYVQQKAAASGSSFYYAFLFLPRQRRAAITAFYAFCREVD DVVDDVSDASVAQAKLAWWQGEVAQAFAGRPSHPVMQALMPHVPAYGIEQGQLQAVIE GCQMDLEQTRYLDFAGLARYCHLVAGVVGEVAAHIFGQTDARTTAYAHKLGLAFQLTN IIRDVGEDAMRGRIYLPISELQQFDVKAHEITRREYSDRFTALMRFQAERAHRLYDEA LALLPDADRRAQKPGLMMASIYRTLLREIEADGFQVLHQRTSLTPLRKFWLAWKMQAL GRM" misc_feature complement(1540417..1541139) /locus_tag="Alide2_1454" /note="Trans-Isoprenyl Diphosphate Synthases, head-to-head; Region: Trans_IPPS_HH; cd00683" /db_xref="CDD:173831" misc_feature complement(order(1540507..1540509,1540519..1540524, 1540696..1540698,1540711..1540713,1540723..1540728, 1540747..1540749,1540813..1540815,1540825..1540827, 1540849..1540851,1541071..1541073,1541083..1541085, 1541104..1541106)) /locus_tag="Alide2_1454" /note="catalytic residues [active]" /db_xref="CDD:173831" misc_feature complement(order(1540519..1540524,1540696..1540698, 1540711..1540716,1540723..1540728,1540747..1540749, 1540756..1540758,1540822..1540824,1540834..1540836, 1540849..1540851,1541071..1541073,1541083..1541085, 1541092..1541094,1541104..1541106)) /locus_tag="Alide2_1454" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173831" misc_feature complement(order(1540711..1540725,1541071..1541085)) /locus_tag="Alide2_1454" /note="substrate-Mg2+ binding site; other site" /db_xref="CDD:173831" misc_feature complement(1541071..1541085) /locus_tag="Alide2_1454" /note="aspartate-rich region 1; other site" /db_xref="CDD:173831" misc_feature complement(1540711..1540725) /locus_tag="Alide2_1454" /note="aspartate-rich region 2; other site" /db_xref="CDD:173831" gene complement(1541328..1542206) /locus_tag="Alide2_1455" /db_xref="GeneID:10482488" CDS complement(1541328..1542206) /locus_tag="Alide2_1455" /inference="protein motif:TFAM:TIGR03464" /note="KEGG: dia:Dtpsy_1124 squalene synthase HpnC; TIGRFAM: Squalene synthase HpnC; PFAM: Squalene/phytoene synthase" /codon_start=1 /transl_table=11 /product="squalene synthase HpnC" /protein_id="YP_004387370.1" /db_xref="GI:330824067" /db_xref="InterPro:IPR002060" /db_xref="InterPro:IPR017827" /db_xref="GeneID:10482488" /translation="MNARPSPQPAAAPTRAAPVTHYENFPVASLLCPPRLREPITAIY AFARAADDIADEGQASPGERLADLHAYRAELHSITAGCLPGPRWAFVFGPLQATLRSH RLPVALLDDLLDAFMQDVAMTRDGATHADRAALLDYCRRSANPVGRLLLHLYGVHGDA ALRESDAICSALQLINFWQDLSVDLPRGRHYLADADCAAYGVARADLAALRRTSASDR LVLDCAAWARGLMLQGAPLVHRLPGRAGWELRLVVQGGLRILDKVQALGGASLTARPR LGAPDWLRMLARAVRM" misc_feature complement(1541367..1542146) /locus_tag="Alide2_1455" /note="Trans-Isoprenyl Diphosphate Synthases, head-to-head; Region: Trans_IPPS_HH; cd00683" /db_xref="CDD:173831" misc_feature complement(order(1541376..1541387,1542132..1542146)) /locus_tag="Alide2_1455" /note="active site lid residues [active]" /db_xref="CDD:173831" misc_feature complement(order(1541463..1541468,1541640..1541642, 1541655..1541660,1541667..1541672,1541691..1541693, 1541700..1541702,1541766..1541768,1541778..1541780, 1541793..1541795,1542042..1542044,1542054..1542056, 1542063..1542065,1542075..1542077,1542132..1542134, 1542138..1542140)) /locus_tag="Alide2_1455" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173831" misc_feature complement(order(1541451..1541453,1541463..1541468, 1541640..1541642,1541655..1541657,1541667..1541672, 1541691..1541693,1541757..1541759,1541769..1541771, 1541793..1541795,1542042..1542044,1542054..1542056, 1542075..1542077,1542132..1542134)) /locus_tag="Alide2_1455" /note="catalytic residues [active]" /db_xref="CDD:173831" misc_feature complement(order(1541655..1541669,1542042..1542056)) /locus_tag="Alide2_1455" /note="substrate-Mg2+ binding site; other site" /db_xref="CDD:173831" misc_feature complement(1542042..1542056) /locus_tag="Alide2_1455" /note="aspartate-rich region 1; other site" /db_xref="CDD:173831" misc_feature complement(1541655..1541669) /locus_tag="Alide2_1455" /note="aspartate-rich region 2; other site" /db_xref="CDD:173831" gene 1542299..1543570 /locus_tag="Alide2_1456" /db_xref="GeneID:10482489" CDS 1542299..1543570 /locus_tag="Alide2_1456" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: dia:Dtpsy_1125 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_004387371.1" /db_xref="GI:330824068" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10482489" /translation="MLLLPAFVRPRSGLFLSPGRPKAKSGPLGGQRTTHCGERGGILL WVLGVSLGLLAGCSRQQPAPEPVRAVKLLTVAASPLQMQLEYAGEVRARVESRLSFRV AGKIVQRQAELGQRVQAGQLLARLDARDYELAAQAARAQVAAATTQRDLAAADFERFS QLKAQNFISGAELDRRQAQLKSAQAVLDQARAQLASQGNQADYTRLLADADGVVTGID AEPGQVVAAGTPVVRVARDGPLDAVFYVPEDKVGQLRVGQAVQVRAWSADAPMPGKVR EVAASADPVTRTFLVKVAVDGGDVPPLGATVYVAPQAFAHGGVQAMRLPTSSLRQEGG QTAVWVYEPGEGGGGTVRSQVVQIATADGNEAVIAAGLAPGMQVVATGVHALAPGQKV TVYKPKSPQTPKGKAPAAMNAGASAASAAVR" misc_feature 1542506..1543480 /locus_tag="Alide2_1456" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 1543580..1546699 /locus_tag="Alide2_1457" /db_xref="GeneID:10482490" CDS 1543580..1546699 /locus_tag="Alide2_1457" /inference="protein motif:PFAM:PF00873" /note="PFAM: Acriflavin resistance protein; KEGG: ajs:Ajs_1207 acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="YP_004387372.1" /db_xref="GI:330824069" /db_xref="GO:0005215" /db_xref="InterPro:IPR001036" /db_xref="GeneID:10482490" /translation="MSQMEPRKGFNLSLWALNHAALTRYLMVVLMVLGVAAYFQLGQD EDPPFTFRAMVVRTYWPGATAQQVAEQVTDKLERTLQEVPYADKIRSYSKPGESQIIF EIKDSSRPAEVANVWYQVRKKIGDMRYQLPGNIQGPFFNDEFGDVFGVIYALQGEGFS YAELKDFADDVRQQLLRVKDVAKVEQFGVQDEKVWIEVSHKRLAQLGLDFNAVLQQLG AQNAVESAGVIQSPQDMVQVRVGGQFTSVEQLRAMPIRGASGAQLRLSDIAEVRRGYV EPPSVKVRFQGREAIGLGISMAKGGDIIALGKALRAAAAGIQARLPAGVQLHQVQDQP ASVAASVNEFVKVLIEAVVIVLGVSFVSLGLHKGGRFGWHIDYRPGLVVAITIPLVLA VTFLAMHYLGIGLHKVSLGSLIIALGLLVDDAIIAVEMMVRKMEEGYDKVRAATFAYD VTAKPMLTGTLITAAGFLPIGIAKSVTGEYTFAIFAVTVIALVLSWIVSVYFVPYLGT LLLKVKPHDPDAPPHELFDTPFYNRFRATVNWCVQHRWITIGATVAIFALGIAGMGRV QQQFFPDSSRPEIMVDLWFPEGTAFAANEAVTKRLERRLMEQDGVESVAAWVGSGTPR FYLPLDQVFPQSNVSQFIVLAKSLPEREALRLSLPKLLAEEVPEARGRVKLLPNGPPV PYPVQFRVLGGDPATLRLRADEVKAAMRANANLVGVNDNWNESVKVVRLEVDQDKARA LGVTSQSIAQASRIMFTGTTVGQYRENDLALDIVLRQSPDEREAISDIANAYLPTASG RSIPLTQIARPVFTWEPGVMWRWSRDYAITVQGDLVEGLQGATVTAQLLPELRALEAR WRAAGDNGVRIEVAGAVEESSKGSASIVAGVPVMLFIVFTLLMLQLHSFSRSVLVFLT GPLGIAGVAAALLLLNRPFGFVALLGVIALMGMIQRNSVILIDQIELDRAAGVPTWNA IVEAAVRRLRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLVVATVLTLLALPAMY AAWFRVRRQ" misc_feature 1543610..1546684 /locus_tag="Alide2_1457" /note="Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841" /db_xref="CDD:31183" gene 1546785..1546871 /locus_tag="Alide2_R0020" /note="tRNA-Leu1" /db_xref="GeneID:10482491" tRNA 1546785..1546871 /locus_tag="Alide2_R0020" /product="tRNA-Leu" /db_xref="GeneID:10482491" gene 1546924..1548234 /locus_tag="Alide2_1458" /db_xref="GeneID:10482492" CDS 1546924..1548234 /locus_tag="Alide2_1458" /inference="protein motif:HAMAP:MF_00303" /note="TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: dia:Dtpsy_1127 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial" /codon_start=1 /transl_table=11 /product="Trigger factor" /protein_id="YP_004387373.1" /db_xref="GI:330824070" /db_xref="InterPro:IPR001179" /db_xref="InterPro:IPR005215" /db_xref="InterPro:IPR008880" /db_xref="InterPro:IPR008881" /db_xref="GeneID:10482492" /translation="MAVTVETLEKLERKITLSLPVTTIQSEVDARLKRLARTVKMDGF RPGKVPMSVVAQRYGYSVQYEVLNDKVGEAFAQAANEAQLRVAGQPRITEKDGAPEGQ VTFDAVFEVFPEVKIGDLATAEVDKLSAEVTEAAIDKTLDILRKQRRTFAQRAQGAAA EDGDRVTVDFEGKIDGEPFQGGKAEDFQFLVGEGQMLKEFEDAVRGMKTGESKTFPLA FPEDYHGKDVAGKTADFLVTVKKIEASHLPEVNEQLAKSLGIADGTVEGLRADIKKNL EREVKFRLQARNKQAVMDALVAKAELDLPNASVQAEIARLLEGARAELKQRGVKDADK AEIPEDVFRPQAERRVRLGLVIAELVRANDLQAKPEQLKAHIDELAASYEKPEDVVRW YFSDRQRLAEVEAVVIENNVTDFVLGKAKVNEKAVSFDELMGQA" misc_feature 1546924..1548225 /locus_tag="Alide2_1458" /note="trigger factor; Provisional; Region: tig; PRK01490" /db_xref="CDD:179299" misc_feature 1547398..1547643 /locus_tag="Alide2_1458" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587" /db_xref="CDD:187101" misc_feature 1547713..1548120 /locus_tag="Alide2_1458" /note="Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698" /db_xref="CDD:191345" gene 1548359..1548967 /locus_tag="Alide2_1459" /db_xref="GeneID:10482493" CDS 1548359..1548967 /locus_tag="Alide2_1459" /EC_number="3.4.21.92" /inference="protein motif:TFAM:TIGR00493" /note="TIGRFAM: Peptidase S14, ClpP; KEGG: dia:Dtpsy_1128 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease, proteolytic subunit ClpP" /protein_id="YP_004387374.1" /db_xref="GI:330824071" /db_xref="GO:0004252" /db_xref="InterPro:IPR001907" /db_xref="GeneID:10482493" /translation="MSALETQALGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGEV NDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCCG FAASMGAFLLAAGAKGKRFSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNR ILAERTGQSIEKVKADTERDYFMTADEARDYGLVDQVISKRP" misc_feature 1548437..1548949 /locus_tag="Alide2_1459" /note="Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017" /db_xref="CDD:132928" misc_feature order(1548473..1548475,1548479..1548481,1548506..1548511, 1548518..1548523,1548530..1548532,1548575..1548577, 1548596..1548598,1548608..1548610,1548617..1548619, 1548626..1548631,1548641..1548643,1548665..1548667, 1548731..1548733,1548737..1548739,1548755..1548766, 1548806..1548808,1548815..1548817,1548821..1548823, 1548827..1548829,1548896..1548898,1548902..1548904) /locus_tag="Alide2_1459" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132928" misc_feature order(1548674..1548676,1548749..1548751,1548896..1548898) /locus_tag="Alide2_1459" /note="active site residues [active]" /db_xref="CDD:132928" gene 1549067..1550332 /locus_tag="Alide2_1460" /db_xref="GeneID:10482494" CDS 1549067..1550332 /locus_tag="Alide2_1460" /inference="protein motif:TFAM:TIGR00382" /note="TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Clp ATPase, C-terminal; Zinc finger, C4-type; KEGG: dia:Dtpsy_1129 ATP-dependent protease ATP-binding subunit ClpX; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease, ATP-binding subunit ClpX" /protein_id="YP_004387375.1" /db_xref="GI:330824072" /db_xref="GO:0005524" /db_xref="GO:0051082" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004487" /db_xref="InterPro:IPR010603" /db_xref="InterPro:IPR013093" /db_xref="InterPro:IPR019489" /db_xref="GeneID:10482494" /translation="MADKKGSSSEKTLYCSFCGKSQHEVKKLIAGPSVFICDECIDLC NEIIRDEQPTGEAAREGRGDLPTPAEIKANLDSYVIGQEKAKRTLAVAVYNHYKRLRH KDKAGKDDVELSKSNILLIGPTGSGKTLLAQTLARQLDVPFVMADATTLTEAGYVGED VENIVQKLLQSCNYDVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLI EGTMASVPPQGGRKHPNQDFLQIDTTNILFICGGAFAGLEKVIENRTEASGIGFGAAV KSKKQRSLTEVFQDIEPEDLIKFGLIPELVGRMPVVTALAELGEDALVQILTEPKNAL VKQYSKLLAMEGVDLEIRPAALKAIARKAIARKTGARGLRSILEQALIGTMFDLPNVS NVEKVVVDEATIEESKAPLLLYREAAKKA" misc_feature 1549076..1550320 /locus_tag="Alide2_1460" /note="ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342" /db_xref="CDD:180029" misc_feature 1549103..1549219 /locus_tag="Alide2_1460" /note="ClpX C4-type zinc finger; Region: zf-C4_ClpX; pfam06689" /db_xref="CDD:148346" misc_feature 1549304..1549801 /locus_tag="Alide2_1460" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1549430..1549453 /locus_tag="Alide2_1460" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1549433..1549456,1549625..1549627,1549799..1549801) /locus_tag="Alide2_1460" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1549613..1549630 /locus_tag="Alide2_1460" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1550018..1550266 /locus_tag="Alide2_1460" /note="C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431" /db_xref="CDD:192583" gene 1550471..1552891 /locus_tag="Alide2_1461" /db_xref="GeneID:10482495" CDS 1550471..1552891 /locus_tag="Alide2_1461" /EC_number="3.4.21.53" /inference="protein motif:TFAM:TIGR00763" /note="SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: dia:Dtpsy_1130 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core" /codon_start=1 /transl_table=11 /product="anti-sigma H sporulation factor, LonB" /protein_id="YP_004387376.1" /db_xref="GI:330824073" /db_xref="GO:0004176" /db_xref="GO:0005524" /db_xref="InterPro:IPR003111" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR004815" /db_xref="InterPro:IPR008269" /db_xref="GeneID:10482495" /translation="MSGHTPLPATPLDLPLLPLRDVVVFPHMVIPLFVGRPKSIKALE MAMDADRSIMLVAQKAAAKDEPQVSDMFEVGCISNILQMLKLPDGTVKVLVEGQQRAQ VTMVHDAETHFTATVTPVQEEAEDGKSSEIEALRRAVMQQFDQYVKLNKKIPPEILTS IASIDDPGRLADTIAAHLPLKLENKQRVLDLADIKLRLEDLFEQLDREVDILNVDKRI RGRVKRQMEKSQRDFYLNEQVKAIQKELGEGEDGADIEEIEKKIKLAKMPVEARKKAE GELKKLKLMSPMSAEATVVRNYIDVLTSLPWSKKTKIKHDLALAENVLNEDHYGLDKV KDRILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGMRDE AEIRGHRRTYIGAMPGKVLQSLGKAGTRNPLFLLDEIDKLGTDFRGDPSSALLEVLDP EQNHKFGDHYVEVDFDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKTNIAIK YLLPKQMTNNGVKDEELRVTESAVRDIVRYYTREAGVRSLERELSKICRKVVKGLQLK KLQAPVEVSADNLSEYLGVRKFSYGHAEKQNQVGQVVGLAWTEVGGDLLTIEVATMPG KGNITRTGSLGDVMKESVEAARTVVRSRARLLGIRDDAFEKRDLHIHVPDGATPKDGP SAGIAMTTAIVSALTGIPVRADVAMTGEITLRGEVTEIGGLKEKLLAALRGGIKTVLI PEANVKDLQEIPDNVKSGLEIVPVKWIDKVLEQALERKPTPLAEEDVAPAVPVAAARE AATGSVKH" misc_feature 1550528..1552810 /locus_tag="Alide2_1461" /note="ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466" /db_xref="CDD:30814" misc_feature 1550528..1551073 /locus_tag="Alide2_1461" /note="Found in ATP-dependent protease La (LON); Region: LON; cl01056" /db_xref="CDD:141077" misc_feature 1551473..1551946 /locus_tag="Alide2_1461" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1551548..1551571 /locus_tag="Alide2_1461" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1551551..1551574,1551749..1551751,1551899..1551901) /locus_tag="Alide2_1461" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1551737..1551754 /locus_tag="Alide2_1461" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1551932..1551934 /locus_tag="Alide2_1461" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1552190..1552801 /locus_tag="Alide2_1461" /note="Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362" /db_xref="CDD:191262" gene 1552987..1553062 /locus_tag="Alide2_R0021" /note="tRNA-Gly2" /db_xref="GeneID:10482496" tRNA 1552987..1553062 /locus_tag="Alide2_R0021" /product="tRNA-Gly" /db_xref="GeneID:10482496" gene 1553120..1553193 /locus_tag="Alide2_R0022" /note="tRNA-Cys1" /db_xref="GeneID:10482497" tRNA 1553120..1553193 /locus_tag="Alide2_R0022" /product="tRNA-Cys" /db_xref="GeneID:10482497" gene 1553362..1553979 /locus_tag="Alide2_1462" /db_xref="GeneID:10482498" CDS 1553362..1553979 /locus_tag="Alide2_1462" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_4464 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_004387377.1" /db_xref="GI:330824074" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10482498" /translation="MARKQKTGSTNANETRENLLKLAARTFGTQGYSATTMRAIAEQA GIEAASIYYHFSSKEELVDEVMEQGAGRIVQELNGHIEALGPDATAEQRFRAAVLGQM TGLVKHGDFALAHGRLLGQLPEAVRERQVKRRERHQKLWNGLLEGLRTEGRLRGDVDI HLARIFILGSINSIQSWFNPRKGALEKIADQLCDMFFAGVSPPAS" misc_feature 1553371..>1553781 /locus_tag="Alide2_1462" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 1553416..1553556 /locus_tag="Alide2_1462" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1554184..1555068 /locus_tag="Alide2_1463" /db_xref="GeneID:10482499" CDS 1554184..1555068 /locus_tag="Alide2_1463" /EC_number="4.1.3.34" /inference="protein motif:PRIAM:4.1.3.34" /note="KEGG: bbr:BB0589 hypothetical protein; PFAM: Aldehyde-lyase domain" /codon_start=1 /transl_table=11 /product="Citryl-CoA lyase" /protein_id="YP_004387378.1" /db_xref="GI:330824075" /db_xref="InterPro:IPR005000" /db_xref="GeneID:10482499" /translation="MTTQMKPIRSFLFVPGNKESMLDKAAGAKADALILDLEDSVPPA EKLAARALVARKIPELIAQGQRIWVRVNRTAHIYDLDDILAVVQPGVEGIYISKPWGP EDVHMASCMIAEAETRANLPLGSVGLIPLLETARSMQLCFEIAQIPRVVGIVGATAKN ADVGRALKYVWTAEGRESEYMKSRVVMAARAAGKQPIGGIWQQIKDLEGLAKASAFDR QLGMSGELALHPMQVETINRTYTPTAEEVAFYQGMIDALEEAQKQGRASVMYDGEHID IAHVKTARDVIALAQSFN" misc_feature 1554211..1555059 /locus_tag="Alide2_1463" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene 1555096..1555557 /locus_tag="Alide2_1464" /db_xref="GeneID:10482500" CDS 1555096..1555557 /locus_tag="Alide2_1464" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7289 MaoC-like dehydratase" /codon_start=1 /transl_table=11 /product="MaoC domain-containing protein dehydratase" /protein_id="YP_004387379.1" /db_xref="GI:330824076" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10482500" /translation="MAGLYFEEFKPGMVIEHAIRRTVTETDNILFSAMTYNCAPLHID AEYSAKTMYGQRLVNSMFLLALVAGITVYETTLGTTLGNLGFGEIAFPKPTFHGDTIR VETEILETRQSKSRPDTGIVTFKHVAKNQRDEIVCTAVRTGLMMLKPADKA" misc_feature 1555102..1555542 /locus_tag="Alide2_1464" /note="FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal...; Region: FkbR2; cd03451" /db_xref="CDD:48046" misc_feature order(1555189..1555191,1555204..1555206,1555210..1555212, 1555219..1555221,1555264..1555266,1555273..1555278) /locus_tag="Alide2_1464" /note="putative active site [active]" /db_xref="CDD:48046" misc_feature order(1555204..1555206,1555210..1555212,1555219..1555221, 1555273..1555275) /locus_tag="Alide2_1464" /note="putative catalytic site [active]" /db_xref="CDD:48046" gene 1555569..1556735 /locus_tag="Alide2_1465" /db_xref="GeneID:10482501" CDS 1555569..1556735 /locus_tag="Alide2_1465" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: bur:Bcep18194_C7290 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387380.1" /db_xref="GI:330824077" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482501" /translation="MDYQLSEDQQAIVDAAEKICADFPLEYWRNKDKNHEFPHEFFEA VASGGWLGICMPEDVGGANLGVTEAALFMRTVAECGGQAAASTIHMNIFGLQPVVHFG TEEQKKRWLPPFARGENKACFAVTEPDTGLDTTKLKVTAQKQPNGDYLISGKKVFIST AQVADHMLILARTTPIEEVKKHSEGLSLFYTKLDRKYVDIREIDKLGRAAVDTNEMFI DNLPVSKDSLIGEEGKGLSYIFHGMNAERVLVAVEQVGIGRAVLKLATQYAKERIVFG RPIGKNQGVQHPLARSWAELEAANHMIFAAASLYDKGQPCGSEANAAKLLASEACMNA CQTSILTHGGFGYAKEYHVERFMREAWIGYIAPVTPQLILSNIAERKLGLPKSY" misc_feature 1555569..1556732 /locus_tag="Alide2_1465" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1555587..1556705 /locus_tag="Alide2_1465" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature order(1555722..1555724,1555935..1555937,1555941..1555943, 1556037..1556039,1556043..1556045,1556661..1556669, 1556673..1556675,1556679..1556681) /locus_tag="Alide2_1465" /note="active site" /db_xref="CDD:173838" gene 1556812..1558056 /locus_tag="Alide2_1466" /db_xref="GeneID:10482502" CDS 1556812..1558056 /locus_tag="Alide2_1466" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: bur:Bcep18194_B2644 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387381.1" /db_xref="GI:330824078" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482502" /translation="MSATKPLEGIRVLDLTVALAGPYGSLLLGGLGAEVIRVESPSGG DIARNNPPYVNQEGIHFGVRHADDVSLSILNRARNKKSITLDLKSPQGKALFMQLAQE CDVLIENASEGATARLGVDYESVRAANPKIIYASIKAFGEPSPYPNLKGMDIIVQALS GIMDVTGFADGPPTRLGLPLADMIAPLYAVNGILSALIHRGRTGEGQRVQVSMLDCLA SLVAEEHFDIYLKAGYPRRSGNFMERLTPFGVYKTRDGYVALVAFQPDWFQNLTEAIG RPELAQDPRFAVLGPRTRNSAEINAIIQDSLGRHTSAEAIRELQEKRGVPCAEVRTPE QVLADCHLQERGAVVPLEHPGLAASGTQAMGMGLPIQFSESPVRFDQPAQALGAANDD IYRGLLKLSEEQLRQLREQGVI" misc_feature 1556812..1558053 /locus_tag="Alide2_1466" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1558058..1559218 /locus_tag="Alide2_1467" /db_xref="GeneID:10482503" CDS 1558058..1559218 /locus_tag="Alide2_1467" /EC_number="5.1.99.4" /inference="protein motif:PRIAM:5.1.99.4" /note="KEGG: bbr:BB0593 CaiB/BaiF family protein; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="alpha-methylacyl-CoA racemase" /protein_id="YP_004387382.1" /db_xref="GI:330824079" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482503" /translation="MAAPRSGPLAGIKVVEIAGIGPGPLAAMFLADLGATVIRVDRKE PSGLGAPRPVQFDLGLRNRRSIRVDLKDPAAVELVMELVGQADALIEGFRPGVMERLS LGPDACLKANPRLVYGRVTGWGQDGPLSQVAGHDLNYISITGALHAMGRAGQAPTPPL NVLGDYAGGSLYLAFGLLAGILEARTSGQGQVVDAAMVDGVASIMTVTMGLHAAGMMG KERGTNLLDTGAHFYEVYECADGRHLSVAPIEGKFYRLLLEKLGLQDHPLLQQQMDKA CWPEAKQVLAARFKERTRDEWTALLGHLDACVAPVLDFDEAPRHPHVKARGTLTEVAG VVQPAPGPRFSRTPAARPEPPAPPSTENALAALQGWLPQERIQAYQSHNTFI" misc_feature 1558067..1559089 /locus_tag="Alide2_1467" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1559231..1560196 /locus_tag="Alide2_1468" /db_xref="GeneID:10482504" CDS 1559231..1560196 /locus_tag="Alide2_1468" /inference="similar to AA sequence:KEGG:BB0594" /note="KEGG: bbr:BB0594 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387383.1" /db_xref="GI:330824080" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482504" /translation="MMHRRTFAGALALAALAPAAFAADWPDGKTIRIVVATGVGSGSD LTARQIATGLGKELNTPVIIENKTGAGGVIGTDFVAKAAPDGYTLLGTYAQHYTNQLV QKTPYDAIKDFEPIARIANSALVISVAANSPYKTLKDVIEAAKQKPGFITYGSSGNGT TSHMAAALFEHMAGVKLNHVPYKAPGQVALDAAAGQIDLSFNGMSSVLPLIKGGRLRP LAVTTPQRSQSLPDVPTVAELGHPGYEAASPIWIFAPRGTPQAIVNKLSEAVVRQAQS QGFRDLCLNQGLEVDIQNAATAKAAGPAELEKWRKLMSVAGAKAE" sig_peptide 1559231..1559299 /locus_tag="Alide2_1468" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 23" misc_feature 1559300..1560181 /locus_tag="Alide2_1468" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1559369..1560184 /locus_tag="Alide2_1468" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1560193..1560615 /locus_tag="Alide2_1469" /db_xref="GeneID:10482505" CDS 1560193..1560615 /locus_tag="Alide2_1469" /inference="similar to AA sequence:KEGG:BB0595" /note="KEGG: bbr:BB0595 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387384.1" /db_xref="GI:330824081" /db_xref="InterPro:IPR011944" /db_xref="GeneID:10482505" /translation="MMAAMPDAQAALEQAVADWNRAGAAWDAQALAAVYAEDALLFGG RPGHSVGRAAIQGYFASYDGVILAGSMRMAETELRTLGPGCVLAQGMVHFAFTLAGGE QTRSTLRATLVLSLEPDRWRILDHHFSTVPSAPPLGKD" misc_feature 1560193..1560573 /locus_tag="Alide2_1469" /note="Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109" /db_xref="CDD:195792" gene 1560619..1561302 /locus_tag="Alide2_1470" /db_xref="GeneID:10482506" CDS 1560619..1561302 /locus_tag="Alide2_1470" /inference="protein motif:PFAM:PF00881" /note="PFAM: Nitroreductase-like; KEGG: bbr:BB0596 nitroreductase family protein" /codon_start=1 /transl_table=11 /product="nitroreductase" /protein_id="YP_004387385.1" /db_xref="GI:330824082" /db_xref="GO:0016491" /db_xref="InterPro:IPR000415" /db_xref="GeneID:10482506" /translation="MTAQNADVDTLRRLIFGRATCRAYLSDPVPEDVIRSIADVARGT ASWCNTQPWDLVVTSGESTGWFRDALMEQARQHPALDSDFPFPEEYRGVYLDRRRRSG LQLYEALGIARGDKERRNAQSFENFRLFGAPHVAIVTVPQELGTYGAVDAGGFVGTFL LSAQAHGVATTPQAALAMQSGFIRRYFGMPEGRKVVCGISFGYADTAHPVNGYRTERA GVDDFLRLV" misc_feature 1560655..1561290 /locus_tag="Alide2_1470" /note="Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a...; Region: Nitroreductase; cd02136" /db_xref="CDD:73304" misc_feature order(1560670..1560672,1560676..1560678,1560682..1560684, 1560760..1560762,1561138..1561143) /locus_tag="Alide2_1470" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:73304" gene 1561307..1562077 /locus_tag="Alide2_1471" /db_xref="GeneID:10482507" CDS 1561307..1562077 /locus_tag="Alide2_1471" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: bbr:BB0597 enoyl-CoA hydratase/isomerase family protein" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387386.1" /db_xref="GI:330824083" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482507" /translation="MDTLLIDEPAPQVRRLTLNRPERMNALDGPTLQALHDAARDCAA AGDAVKVLVIRGSGRAFCAGNDLKWLAGGVLADRAAHMRHQDLMQATFECLESAPQIV LASVNGYALAGGFELALACDLIIADDAAELGDEHIRRDLLPSGGGSQRLPRRLGLQRA LLHLVTGRRMTGREAAAQGLAAQAVPSGLLESATLQLAQEIAQADALALASMKQMARR ALELPLRDGLQYERWMQHRYRTQSGALEAGVQDFAAKN" misc_feature 1561307..1562074 /locus_tag="Alide2_1471" /note="Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Region: CaiD; COG1024" /db_xref="CDD:31227" misc_feature 1561328..1561909 /locus_tag="Alide2_1471" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1561376..1561378,1561382..1561384,1561481..1561483, 1561493..1561507,1561631..1561633,1561637..1561645, 1561709..1561714,1561721..1561723) /locus_tag="Alide2_1471" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1561499..1561501,1561643..1561645) /locus_tag="Alide2_1471" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1561583..1561585,1561607..1561609,1561670..1561681, 1561715..1561726,1561742..1561744,1561748..1561756, 1561760..1561765,1561778..1561783,1561787..1561792, 1561796..1561801,1561808..1561810,1561841..1561843, 1561850..1561852,1561895..1561897,1561904..1561909) /locus_tag="Alide2_1471" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1562272..1563444 /locus_tag="Alide2_1472" /db_xref="GeneID:10482508" CDS 1562272..1563444 /locus_tag="Alide2_1472" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB0598 extracellular ligand binding protein" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004387387.1" /db_xref="GI:330824084" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10482508" /translation="MRNTFRLPATLIQAAGAAALLAMAPLCAAETIKLGLSIPLSGSG ANWGKGSEWMCAKAAQEVNAQGGVKVKGQAHQFECVGYDNKYNAAEGAKVAQALVARD EVKFVAGSIGVAPARALQSLTERRNVLLFTAAWGNSMKGPKFPLTFSQMNSPNEISEP LITHVKKLHPGVKTVVLLNPNDATGQETEKVAKAAWEKNGVKVLVSDWYERGTSEFQP IAAKLHAAKPDVVDLASTPPADAGLIFKELKALGWNGVKVVEVGTGADGLLATGKDAV EGAYLGAAVSVDSMTPQQKALDEGVRKATGESVNAIQIGFYDAVWAIKAAMEKAQSID PAEVAKAMPTVRFKSFYGETGFGGKDVYGSDQQMRLPVIITKLVGTSLQEVGRVQK" sig_peptide 1562272..1562358 /locus_tag="Alide2_1472" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.869 at residue 29" misc_feature 1562359..1563426 /locus_tag="Alide2_1472" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1562368..1563375 /locus_tag="Alide2_1472" /note="Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_ligand_binding_like_3; cd06336" /db_xref="CDD:107331" misc_feature order(1562599..1562607,1562671..1562679,1562821..1562823, 1562977..1562979,1563052..1563054) /locus_tag="Alide2_1472" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107331" gene 1563454..1564329 /locus_tag="Alide2_1473" /db_xref="GeneID:10482509" CDS 1563454..1564329 /locus_tag="Alide2_1473" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: bbr:BB0599 putative branched-chain amino acid transport system permease protein" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387388.1" /db_xref="GI:330824085" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10482509" /translation="MQDVVQLLFTALQISAVYILFSLGLTIIFGVLKVVNFAHGQFFT FGALVLSLVLRALAPSLGHGWAAYLLAGLAGLAACLFAGLVVYQFGFKRLERDMIGSF ILSAGLVLLFEGIMLEVFGGAVRPVPALLEGNVRLLGLTVSSQRLVLLAFAVLLTAAI IVLLQRTRFGKALRAVSIDHEAAMLQGVAYRQIALYGFLMATAVAAIAGMLIAPLAAV TPTLGDSYLVKGFIAVVVGGMGSIVGAIVGSVLIALLESFVGFYFDPSLANLAIFVIV MVVLLVRPKGFFGND" misc_feature 1563484..1564317 /locus_tag="Alide2_1473" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 1563994..1564050 /locus_tag="Alide2_1473" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 1564322..1565239 /locus_tag="Alide2_1474" /db_xref="GeneID:10482510" CDS 1564322..1565239 /locus_tag="Alide2_1474" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: bbr:BB0600 putative branched-chain amino acid transport system permease protein" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387389.1" /db_xref="GI:330824086" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10482510" /translation="MTEHKDSIGIAAIGCVLLACVALGSGYVGSLMVWMALAAALAAS LRFVLLIGELNFASAAFYGLGAYCTGTIANTADWPFAATLALSSLLALAVSIVFGGIT LKVKGPYFLLIGFAFTEAMRILYTRTEALGGNSGLVGIFPPAWLDPYYQYFATALCFA LILGMLAIERSHLGKIFVAIRDNENVVRSVGNRVFLAKVACFAIASAVAGLVGSLHAY ANNVISPLDFGFMLSTFALAYLKVGGEDSPLGPVIGAVLLVGIASWAQSMGGSEHILY GLAIVLSVLFMPKGLMGLLERLRAGRGGR" sig_peptide 1564322..1564450 /locus_tag="Alide2_1474" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.823) with cleavage site probability 0.454 at residue 43" misc_feature 1564475..1565188 /locus_tag="Alide2_1474" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 1564874..1564930 /locus_tag="Alide2_1474" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 1565242..1565991 /locus_tag="Alide2_1475" /db_xref="GeneID:10482511" CDS 1565242..1565991 /locus_tag="Alide2_1475" /EC_number="3.6.3.17" /inference="protein motif:PRIAM:3.6.3.17" /note="PFAM: ABC transporter-like; KEGG: bbr:BB0601 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="monosaccharide-transporting ATPase" /protein_id="YP_004387390.1" /db_xref="GI:330824087" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482511" /translation="MADGKTLLSGRNLSKQFKGLLAVSGVDIDIRRGEIVGLIGPNGA GKSTTFNLLSGFLAPTTGTLTIAGADMTGASPERISQQGLVRTFQHGSYLPTMTVRDN VLIGALGGTRNGRVARGEQERVIAQAIALFGLSDHANAVAKNLPHGLQRLLSMAIAFA ARPQLICYDEPLTGLNQTEVAETLKVYRRLKSEHGMSMLLVEHNMRAVMAICDRIYVL HHGEIIFTGTPDEVKTSDAVLKAYLGEAHDL" misc_feature 1565254..1565976 /locus_tag="Alide2_1475" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 1565263..1565955 /locus_tag="Alide2_1475" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 1565359..1565382 /locus_tag="Alide2_1475" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(1565368..1565373,1565377..1565385,1565506..1565508, 1565746..1565751,1565848..1565850) /locus_tag="Alide2_1475" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 1565497..1565508 /locus_tag="Alide2_1475" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 1565674..1565703 /locus_tag="Alide2_1475" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 1565734..1565751 /locus_tag="Alide2_1475" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 1565758..1565769 /locus_tag="Alide2_1475" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 1565836..1565856 /locus_tag="Alide2_1475" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 1565981..1566700 /locus_tag="Alide2_1476" /db_xref="GeneID:10482512" CDS 1565981..1566700 /locus_tag="Alide2_1476" /EC_number="3.6.3.17" /inference="protein motif:PRIAM:3.6.3.17" /note="PFAM: ABC transporter-like; KEGG: bbr:BB0602 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="monosaccharide-transporting ATPase" /protein_id="YP_004387391.1" /db_xref="GI:330824088" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482512" /translation="MTSEHTLAVRDLTVHYGAVPAVTGVSMEVKGGSIVSLIGANGAG KSTLIKAITGLVKVRSGEVTLGGKPLTNRAPNVILDHGIALVPEGRRLFGGMTVRENL EMGAYRIRDAARQAELLDTCLRYFPDLKAKLASDASSLSGGQQQMVAVARALMSAPSV LLLDEPTIGLAPAFVNVISAVVRDVNRQGVTVLLVEQNAEVALRVSHHAYVLESGRVV KHGPSDVFLHDPDIKKAYLGL" misc_feature 1565990..1566697 /locus_tag="Alide2_1476" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 1565999..1566667 /locus_tag="Alide2_1476" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 1566095..1566118 /locus_tag="Alide2_1476" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(1566104..1566109,1566113..1566121,1566242..1566244, 1566470..1566475,1566569..1566571) /locus_tag="Alide2_1476" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 1566233..1566244 /locus_tag="Alide2_1476" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 1566398..1566427 /locus_tag="Alide2_1476" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 1566458..1566475 /locus_tag="Alide2_1476" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 1566482..1566493 /locus_tag="Alide2_1476" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 1566557..1566577 /locus_tag="Alide2_1476" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene complement(1566715..1568685) /locus_tag="Alide2_1477" /db_xref="GeneID:10482513" CDS complement(1566715..1568685) /locus_tag="Alide2_1477" /EC_number="1.5.8.2" /inference="protein motif:PRIAM:1.5.8.2" /note="KEGG: bbr:BB0603 NADH:flavin oxidoreductase / NADH oxidase family protein; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; Alanine dehydrogenase/PNT, C-terminal" /codon_start=1 /transl_table=11 /product="Trimethylamine dehydrogenase" /protein_id="YP_004387392.1" /db_xref="GI:330824089" /db_xref="InterPro:IPR001155" /db_xref="InterPro:IPR007698" /db_xref="GeneID:10482513" /translation="MSLYKRVFSPIRIGGVEVPNRIVRTAHATRLAHRYVNDDLIAYH LERAKGGAGLSIIESTSVHPSSTFSLSAADDGAIAPMRRLVDAIAPSGMKLFTQLWHG GYTDPAADGGLPWAVTALPGRYSVAPPIPMTTGQIGELVDAYGQAAARMQAAGLDGVE VLAGAGYLFSQFFSPVLNQRQDEYGGSFDNRIRALLETLRAIRAATSPGFALGVRLGA STDERILSTADVNAIALRAQAEGLIDFVNITHGDYYFHVERYAGMDRPVGYQLPASER VGQGLTVPRIIVGRYATLDDAEQALKEGQADMVNIVRGMIADPMLVAKARAGRGTEVR PCIGCNQGCIGGVFTGRMRCAVNPVVGDEARLAEDRIVPAPSPRKVLVVGGGVAGMEA ARTARLMGHRVTLIEATSGLGGLLNQARHLPKLHLIGDIALWLEGEIYRLGVDVRLST YVEAGEVLAENPDVVIVATGSQPTEASGFRQTADPAAGLRIAPGARVLTSLDLCMAGA GDYGKTAIVFDDIGHYEAIGCCEALIASGAEVTYVTRHLMFAPAVEGTGRTQAALQRF HRSGRFRVLTQSALVSIDQGSAEVRPLYGDTPENVSADTVVLVGYRQSQNEIWQALQG RVPQLHIVGDALSARDIQPAIREGHLAARSIA" misc_feature complement(1566721..1568670) /locus_tag="Alide2_1477" /note="mycofactocin system FadH/OYE family oxidoreductase 2; Region: mycofact_OYE_2; TIGR03997" /db_xref="CDD:188512" misc_feature complement(1567666..1568667) /locus_tag="Alide2_1477" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature complement(order(1567747..1567752,1567816..1567821)) /locus_tag="Alide2_1477" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73384" gene complement(1568682..1569464) /locus_tag="Alide2_1478" /db_xref="GeneID:10482514" CDS complement(1568682..1569464) /locus_tag="Alide2_1478" /inference="protein motif:PFAM:PF00106" /note="PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0604 short chain dehydrogenase" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_004387393.1" /db_xref="GI:330824090" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10482514" /translation="MDMELTGRRVLVTGASQGIGEGLAKAFAAEGCHLALVARSADKL EALAAGLRAAHGVRVDVLALDMTQAGAVEEIMAFAGDADVLVNNAGAIPGGNLWDVDA QAWRKGWELKVFGYIDLTRALYPRMKARGGGVILNNIGNGGQNPDFNYIAGSTGNAAL MAFTCALGGRSLEDGIRVVGVNPGPVATERIAKVLKSHAARLLGDEARSGELMAGYPL GRAATVAEVADLFVYLASPRSSYTSGTIVTVDGGITSRRSVA" misc_feature complement(1568709..1569458) /locus_tag="Alide2_1478" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(1568703..1569446) /locus_tag="Alide2_1478" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(1568907..1568918,1568994..1568996, 1569006..1569008,1569045..1569053,1569195..1569203, 1569345..1569353,1569408..1569410,1569414..1569419, 1569423..1569425)) /locus_tag="Alide2_1478" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(1568994..1568996,1569006..1569008, 1569045..1569047,1569129..1569131)) /locus_tag="Alide2_1478" /note="active site" /db_xref="CDD:187535" gene complement(1569629..1571050) /locus_tag="Alide2_1479" /db_xref="GeneID:10482515" CDS complement(1569629..1571050) /locus_tag="Alide2_1479" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_B2639 hypothetical protein" /codon_start=1 /transl_table=11 /product="MmgE/PrpD family protein" /protein_id="YP_004387394.1" /db_xref="GI:330824091" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10482515" /translation="METIIEQLAGFSAGTRFEELPAPVVHEVKRLVLDSIGCAFAAVE HPKGRIGIEYGRMVAGQGNAAIIGTPHRASVLGAAIANGELINALDMDAVVPPGHVTP YVLPGALAIGETSDASGRDLIRAVAVAHEMSWRFGKAMDYLRDMKDGQLDTPKVFGFS STIFGATAAIGMLQRQSAETLADSLSIAGYISPVQSMMAFFHHAPSTTIKYTMAAALV QAAMMAAHMGLLRHRGDVQLLDDAEHGYARFIGTRRWEPARITDDLGKRWGFIDEQIY KLYPHCRILHGPLDCLIGIVEQHDIRPEEIDGIDLLVEGFVEKPTWLTQDIQHVHDGQ FSIAHGMAMGAHRLKPGRDWQDPRHVFSPSVLALMKKVRHRAHPDYVKELSSHASARP SRVEVKARGQTFAAETLYPKGSPSPDPDNLISTTELIAKFHHNAEGVVPRRTADAIVN AVMDLDRECDVSMLMTLTTHTSA" misc_feature complement(1569680..1571050) /locus_tag="Alide2_1479" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene 1571140..1572096 /locus_tag="Alide2_1480" /db_xref="GeneID:10482516" CDS 1571140..1572096 /locus_tag="Alide2_1480" /inference="protein motif:PFAM:PF00126" /note="PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2640 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387395.1" /db_xref="GI:330824092" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482516" /translation="MPPPTHERSGRAGRLDLHLVATLQAVMQTGSVSRAAVALGVSQP AISQNLRKLREHFGDELFVRSGRGLQPTPRMLALRPVVERLLHDMEMLSRPSEGFDPQ GAELEFIVCMSEFVEFTVLPRVAAEFALHAPRCRLRGVRAHHVQLLSMLERGEADLAV GSLVGAAPSLRQQRLADHRLVCMVSAHGRWAGEPPGFQDYAEGRHVAVQRASDQMDPV SERLRLSGIRRNAVITVSSDFVAARTVVATDALGTVTRAVGRQLADLFPVRLQPLPFD AGTFTSRMIWHERFQRDAGHVWLRKLVEAEYRRWVQEPQALP" misc_feature 1571185..1572045 /locus_tag="Alide2_1480" /note="leucine transcriptional activator; Reviewed; Region: leuO; PRK09508" /db_xref="CDD:181918" misc_feature 1571188..1571361 /locus_tag="Alide2_1480" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1571458..1572054 /locus_tag="Alide2_1480" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(1571503..1571508,1571512..1571517,1571524..1571526, 1571536..1571538,1571542..1571562,1571833..1571850, 1571866..1571871,1571875..1571880) /locus_tag="Alide2_1480" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 1572263..1573231 /locus_tag="Alide2_1481" /db_xref="GeneID:10482517" CDS 1572263..1573231 /locus_tag="Alide2_1481" /inference="similar to AA sequence:KEGG:BB0605" /note="KEGG: bbr:BB0605 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387396.1" /db_xref="GI:330824093" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482517" /translation="MIHRRSFSIALAAAALPLAARAQDYPKQPVRGIVSNAPGTGTDI TARFITKQMSQKWGVPVFVENKAGAGGALATDYVAKAAPDGYNILFTTGAHYGLPALY EKLAFDAQADFIPVAALAQSPIVVFVPADSPFKTVQDLIDAAKKSPNSLSYSSPGGGT SSHLAAVMMNNQAGIRMLHVPYKSASQSALDVASGQVPVGFNGTGAALPLLHAGKIRI LAISSRKRSATLPQVPTLDEAGLKGYDFVVPILALVRAGTPAPIVDAIGAAATAAAAQ PEFQELCKAQGLDVAIQGPAEMKVSAPQEFAKWKHLVALAGAKAQN" sig_peptide 1572263..1572331 /locus_tag="Alide2_1481" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 23" misc_feature 1572329..1573213 /locus_tag="Alide2_1481" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1572398..1573216 /locus_tag="Alide2_1481" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1573234..1573329 /locus_tag="Alide2_1482" /pseudo /db_xref="GeneID:10482518" gene complement(1573392..1574549) /locus_tag="Alide2_1483" /db_xref="GeneID:10482519" CDS complement(1573392..1574549) /locus_tag="Alide2_1483" /EC_number="5.1.99.4" /inference="protein motif:PRIAM:5.1.99.4" /note="KEGG: bur:Bcep18194_C7493 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="alpha-methylacyl-CoA racemase" /protein_id="YP_004387397.1" /db_xref="GI:330824094" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482519" /translation="MTKQAQGPLKGVRIVEIGGIGPAPFCCMLLADLGAEVVRIDRPA GHDGGAPIDARFDLLNRSRRSVQMDLKKPEAVAAVLRMVAQADVLIEGFRPGVMERLG LGPDACLKANPRLVYGRMTGWGQDGPLAQAPGHDVNYISLTGALHAMGRAGEAPAIPL NLVGDFGGGSLYLALGVLSALLEARTSGQGQVVDAAMVDGATSLMTLIYGLLAAGYWK DERGANRLDSGAPWYNVYETRDGRHVSIAANETRFYREALGVLGLAERELPGQHDQAG WPLMKQRFAEVFKTRTQGEWVALAAGTQSCIVPVLSLAEAPGHDHIRQRGSFVEVDGV LQPAPAPRFSRTPGAIQNPPPHPGQDGDAVLGDWGFSAQEQQAMRAAGAVL" misc_feature complement(1573398..1574531) /locus_tag="Alide2_1483" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1574595..1575071) /locus_tag="Alide2_1484" /db_xref="GeneID:10482520" CDS complement(1574595..1575071) /locus_tag="Alide2_1484" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387398.1" /db_xref="GI:330824095" /db_xref="GeneID:10482520" /translation="MRPNGHWNTRFYTRAFPYASETVALLGGNGNPGAATIGSRHIRF QHASYDHHVSLGYSPQFIAQTGVGRMVVEMRTTWLGQASAGMGIRSNSWLVHAQGKSF STAHRLETLSGTPIALVELCLVAVDMQSRRATPVPDFLPAQARAGANTPENIAGSA" misc_feature complement(1574634..>1574942) /locus_tag="Alide2_1484" /note="The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509" /db_xref="CDD:193847" gene complement(1575398..1575556) /locus_tag="Alide2_1485" /db_xref="GeneID:10482521" CDS complement(1575398..1575556) /locus_tag="Alide2_1485" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387399.1" /db_xref="GI:330824096" /db_xref="GeneID:10482521" /translation="MHGRMALALAALGLAEDGMHLIGSSAAEFERQVAHEIAVNRKLV QELQITAD" gene complement(1575581..1576738) /locus_tag="Alide2_1486" /db_xref="GeneID:10482522" CDS complement(1575581..1576738) /locus_tag="Alide2_1486" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: reu:Reut_A1830 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387400.1" /db_xref="GI:330824097" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482522" /translation="MQHDSPSDLPLAGFTVVELSDSASAPFAGHVLAGLGAEVWKVER PGGDSARGWGPSQWKGCGAAFHAINRGKRSICLDIKDPVQLATLHDLIERHADVFLHN LRPGSSGQYRLDPESLRARKPSLVVCEVGAYGHVGPLNTLPGYDPLMQAFSGIMMLTG EDGQAPVRAGVSIVDFGTGMWAVIGIVSALLRRERRKIGATVNSSLLETAIAWMSIGI ANYAADGDPGGRHGSGVAFIVPHRAYEAADGYAIISAANDRLFARLAEALGHPEWGTD PKFATNAGRLANRQEIDGLIGQVMKRHTREYWQKHFDGFGLPCASVQTTAELYAHEQT RALGILGKTSEDEIDLVGVPLSFDRQRPPPLDSAPEVGQDNERLRQLLQAG" misc_feature complement(1575593..1576723) /locus_tag="Alide2_1486" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1576786..1578018) /locus_tag="Alide2_1487" /db_xref="GeneID:10482523" CDS complement(1576786..1578018) /locus_tag="Alide2_1487" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387401.1" /db_xref="GI:330824098" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482523" /translation="MAGPLTGVRILDLTSNFMGPYASLLLADMGADVCKIEAPGGDPT RGVGPCRNKGMSVIFLHLNRNKRSAVLDLKNAQAAAALQRMLQSADVVLHSLRPKAMA KLGLAYEDVRKVNPRIIYCGAFGFGQNGPYAERPAYDDLIQAAVGMPVLQARKSGPPQ YVATAIADRLVGMAACNAVAMALYYREKTGHGQSVEVPMFETFAHFVLGDHLYGHTFE PPIGDWGYARMMSAERRPYQTKDGYLGVNIYTDRHWQRFFLAVGRPDMAEDPRYGTIF GRTENIAYLYKFLADTFETRTSAEWLRILTEADIPVIQMNTPETLLRDPHMQAVNFFQ MQQHPSEGLLRMMGIPQTWSESQPEQRYPAPRLGEHTVQLLTEYGLSADEARQIVAAG GALQAPVLDAHETIASSA" misc_feature complement(1576843..1578018) /locus_tag="Alide2_1487" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1578024..1579031) /locus_tag="Alide2_1488" /db_xref="GeneID:10482524" CDS complement(1578024..1579031) /locus_tag="Alide2_1488" /inference="similar to AA sequence:KEGG:Reut_A1831" /note="KEGG: reu:Reut_A1831 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387402.1" /db_xref="GI:330824099" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10482524" /translation="MTAIKNLSSRRDWLKAGCATLALGLAAGAAQAQQDWPTRPVRIV LAIAAGSSGDTLARMVAPKLEARWKQPVIVENKPGASGVVGTEHVVRATDGHTLLLGT QSSILPKYTQKGLRFDPLTDLVPVRKVLNYELVIATNGETAKQARTLKDLIALSKKDG KGLFLAGLGPVSVFNLSYAILNQQLGMQYSAVNYSNVNDANLSLTRNDTQFIVNNPAS IRPHFATGAIVPLAAISTQRYAGLPDVPTLAEAVGYTGYLPLLWTGFFVPKGTPAAVV DRINRDVQAVFAEEEFRKQVEAKLTATVAASSPETFAKEIREETAIWQDLFKTLNIQP E" sig_peptide complement(1578933..1579031) /locus_tag="Alide2_1488" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.978 at residue 33" misc_feature complement(1578033..1578929) /locus_tag="Alide2_1488" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1578036..1578863) /locus_tag="Alide2_1488" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1579149..1580330) /locus_tag="Alide2_1489" /db_xref="GeneID:10482525" CDS complement(1579149..1580330) /locus_tag="Alide2_1489" /EC_number="2.3.1.176" /inference="protein motif:PRIAM:2.3.1.176" /note="KEGG: eba:ebA306 lipid-transfer protein; PFAM: Beta-ketoacyl synthase, C-terminal" /codon_start=1 /transl_table=11 /product="Propanoyl-CoA C-acyltransferase" /protein_id="YP_004387403.1" /db_xref="GI:330824100" /db_xref="InterPro:IPR014031" /db_xref="GeneID:10482525" /translation="MSNKARIIGVNMVKFAKPGSHEPYEVMGAKAIRGALEDAGIGYD EVQQAFAGYVYGDSACGQRTVYDVGMSGIPVFNLTNYCASGSSALFLARQAVEAGVVE CALAFGFEEMKPGALASAWSDRTLPVGWIYECQQKLAPELPQDAPRAIKAFGSAGWEY INRYGANPDIFAKVAVKSRNHAMNNPYALFTKPLTVEEVMGATQMYPYLTRLMACPPT CGAAAAIVCSEAFARRHGITNAIEIAGQAMTTDTEASKTDLINLVGADMTRRAARQVY EQAGVGPEDVDVVELHDCFTPNEVISYEGLGLCPEGGAEKFINDGDNTYGGKYVVNPS GGLMSKGHPLGATGLAQCTELVWHLRGTAGKRQVEGARVALQHNIGLGGACVVTMYQR A" misc_feature complement(1579152..1580324) /locus_tag="Alide2_1489" /note="lipid-transfer protein; Provisional; Region: PRK08256" /db_xref="CDD:181327" misc_feature complement(1579161..1580309) /locus_tag="Alide2_1489" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature complement(order(1579305..1579307,1579455..1579457, 1580085..1580087)) /locus_tag="Alide2_1489" /note="active site" /db_xref="CDD:29416" gene complement(1580343..1580684) /locus_tag="Alide2_1490" /db_xref="GeneID:10482526" CDS complement(1580343..1580684) /locus_tag="Alide2_1490" /inference="similar to AA sequence:KEGG:BBta_2933" /note="KEGG: bbt:BBta_2933 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387404.1" /db_xref="GI:330824101" /db_xref="GeneID:10482526" /translation="MAKLQLKDLVYARSGDKGDISNIAVIAKEPRYYPLLQKHLTAER VKAFFGEMSKGTVDRYEVKTLHAMNFVLRNSLGGGATRSLRIDFTGKTMCQAILRIVL EVDESDLHLIH" gene complement(1580686..1582044) /locus_tag="Alide2_1491" /db_xref="GeneID:10482527" CDS complement(1580686..1582044) /locus_tag="Alide2_1491" /inference="protein motif:PFAM:PF07287" /note="PFAM: Protein of unknown function DUF1446; KEGG: sth:STH1574 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387405.1" /db_xref="GI:330824102" /db_xref="InterPro:IPR010839" /db_xref="GeneID:10482527" /translation="MKTIRIGSGSGFWGDNLDPAIEIARHGNVQYLAYDFLGEPTIPL LQKMQKKNPAQGFVPSIRAVVRGVLPICLEKGIKILTNAGAANPQACADTILATAREL GITQLKVGIVTTNDIQQKVEELLDKGVKFTNLDTGDDDLGKVRDRIVGSYVYSGAYGY VEALQQGCDIIISDRATDDAAILAPLVHEFGWKWDEWDKLATGITAGHLIECGAACTG GISSLWKEVPDPWNIGYPIAEVNEKGELFITKVDGTGGLVNQVTLTEHLLYEVHDPGN YLMPEVVTDFTNVQMEQVGKDRVKVWGARGKPAPATLKAGIAYTDGYIGEVESSVTWP DAVAKARRSFEIIKKRFEMVNLKADEVRFDMIGVDSCHWSASPEPDPEINEVRIRVAA KCADRGEAGKVARECVMLMGTGPIGSTGQLNTPVPREVFALWPTLLAREEVKQNVEIR EL" misc_feature complement(1580944..1582029) /locus_tag="Alide2_1491" /note="Protein of unknown function (DUF1446); Region: DUF1446; pfam07287" /db_xref="CDD:191720" gene complement(1582050..1582550) /locus_tag="Alide2_1492" /db_xref="GeneID:10482528" CDS complement(1582050..1582550) /locus_tag="Alide2_1492" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC-like dehydratase; KEGG: reu:Reut_A1834 MaoC-like dehydratase" /codon_start=1 /transl_table=11 /product="MaoC domain-containing protein dehydratase" /protein_id="YP_004387406.1" /db_xref="GI:330824103" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10482528" /translation="MSLINNQINQTFDELEEGQVFNSGGRTITETDVVNYCALTGNWI AIHSNTLYASKTRFGKRLVQGALTYSIATGLIQFGLGIQANYGIDNMRFLKPVLIDDT VFAKATVIGKKVKDEKYGVIQFLMQVLNQDGDVVQQGEWSLLMLRKREDLDALVASTL PAPKKA" misc_feature complement(1582116..1582520) /locus_tag="Alide2_1492" /note="MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-...; Region: MaoC_like; cd03446" /db_xref="CDD:48041" misc_feature complement(order(1582272..1582274,1582278..1582280, 1582284..1582292,1582296..1582298,1582320..1582322, 1582341..1582343,1582353..1582355,1582416..1582418, 1582425..1582430,1582443..1582445,1582473..1582475)) /locus_tag="Alide2_1492" /note="homodimer interaction site [polypeptide binding]; other site" /db_xref="CDD:48041" misc_feature complement(order(1582353..1582358,1582365..1582367, 1582410..1582412,1582419..1582421,1582425..1582427, 1582440..1582442)) /locus_tag="Alide2_1492" /note="putative active site [active]" /db_xref="CDD:48041" misc_feature complement(order(1582356..1582358,1582410..1582412, 1582419..1582421,1582425..1582427)) /locus_tag="Alide2_1492" /note="putative catalytic site [active]" /db_xref="CDD:48041" gene complement(1582565..1583707) /locus_tag="Alide2_1493" /db_xref="GeneID:10482529" CDS complement(1582565..1583707) /locus_tag="Alide2_1493" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387407.1" /db_xref="GI:330824104" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482529" /translation="MANFLDESQQMWLDSVNRFMDNEITCEYIRKCDQNRDYPYEAYD KIAQQGWLGLLFSEEEGGAGGNIFDYVLMAEGLGKYGFDFAAAILVPTFTAMNIAKYG TQAQKDKYIKPFIEGKIRFSVSISEPDAGSDASNTKTRARRDANGDWIVSGQKLWCSG AAAQDVVIAMLVRTDPDNKHGGLSVLLIPNDTPGLVINKLPTLSRHATGTTEIFLDNV RVPGDAILGEEGQGWKIITEHLELERCSVAAAYTGNAQEAVSNAVRYAHDRVQFGKQL WDFQVLKHMLADRQTEVDAARLLCYRAAQMASEHKPCSREVSMAKLYASETLKQCALT GMQVLGGYANLPEADMERYLRESIQCTIGGGTSQIQKTIIAKSMRM" misc_feature complement(1582574..1583707) /locus_tag="Alide2_1493" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(1582574..1583689) /locus_tag="Alide2_1493" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(1582604..1582606,1582610..1582612, 1582616..1582624,1583231..1583233,1583237..1583239, 1583333..1583335,1583339..1583341,1583429..1583431)) /locus_tag="Alide2_1493" /note="active site" /db_xref="CDD:173838" gene complement(1583853..1583966) /locus_tag="Alide2_1494" /db_xref="GeneID:10482530" CDS complement(1583853..1583966) /locus_tag="Alide2_1494" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387408.1" /db_xref="GI:330824105" /db_xref="GeneID:10482530" /translation="MSADFVEAIYRLIGTPSIFKEFSPRNDRAYCGSRSHF" gene 1584236..1585042 /locus_tag="Alide2_1495" /db_xref="GeneID:10482531" CDS 1584236..1585042 /locus_tag="Alide2_1495" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="KEGG: bur:Bcep18194_C7276 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004387409.1" /db_xref="GI:330824106" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10482531" /translation="MATHTLHEKVALVTGATGGIGRGVALQLAARGARIVVNGRSAAK AQAVLDEIRALGGEACFATGDVRSRADMQAVVDEAVRRFGGVDIVVPNAGGNDDEARS PEVRGPFPGIDLERVTRFVGEALAAKLMVVQAAVPSMRARGGGSVVFVTSEGGRSPTP GQTAIAGFSGGLIAASKVLSKDLARERIRVNCVCVTVVRDTPSWTAVFGEGSTVSDMH RKQYEKIVARCPLGVASPADIGRVVAFLASDDAAYLTGAALSPTGGLTIH" misc_feature 1584248..1585030 /locus_tag="Alide2_1495" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1584260..1585033 /locus_tag="Alide2_1495" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(1584278..1584280,1584284..1584289,1584293..1584295, 1584350..1584358,1584509..1584517,1584683..1584691, 1584728..1584730,1584740..1584742,1584839..1584841, 1584866..1584874) /locus_tag="Alide2_1495" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1584605..1584607,1584689..1584691,1584728..1584730, 1584740..1584742) /locus_tag="Alide2_1495" /note="active site" /db_xref="CDD:187535" gene 1585084..1585899 /locus_tag="Alide2_1496" /db_xref="GeneID:10482532" CDS 1585084..1585899 /locus_tag="Alide2_1496" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: pol:Bpro_5272 short chain enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387410.1" /db_xref="GI:330824107" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482532" /translation="MSNRPVDEQVPAPHVTVRREGRVGVIELSRPDKSNALSRSAFQA IQAAMDAFEQPDSEVRAVLVCAQGKHFSTGGDLEEAKAMMREPAVLDAFLQFVNGTLQ RLEGSLLPVVAACQGLSLAGGLELALSCDVVFAASDARFGDQHVQYGLVPAWGGTQRL PRLLGIHRALDLMYSGRWIDASTAQQWGIVGYVVEPGTVAQEAMKYCQLLASRSGPGL AAMKRLSRFAVDIPLDTGLRAERLAVVQAMRGPDPAEGIAAFEARRTPLFQDR" misc_feature 1585120..1585875 /locus_tag="Alide2_1496" /note="Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Region: CaiD; COG1024" /db_xref="CDD:31227" misc_feature 1585126..1585713 /locus_tag="Alide2_1496" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1585183..1585185,1585189..1585191,1585288..1585290, 1585300..1585314,1585435..1585437,1585441..1585449, 1585513..1585518,1585525..1585527) /locus_tag="Alide2_1496" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1585306..1585308,1585447..1585449) /locus_tag="Alide2_1496" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1585387..1585389,1585411..1585413,1585474..1585485, 1585519..1585530,1585546..1585548,1585552..1585560, 1585564..1585569,1585582..1585587,1585591..1585596, 1585600..1585605,1585612..1585614,1585645..1585647, 1585654..1585656,1585699..1585701,1585708..1585713) /locus_tag="Alide2_1496" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1585961..1586974 /locus_tag="Alide2_1497" /db_xref="GeneID:10482533" CDS 1585961..1586974 /locus_tag="Alide2_1497" /inference="similar to AA sequence:KEGG:Reut_A1831" /note="KEGG: reu:Reut_A1831 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387411.1" /db_xref="GI:330824108" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482533" /translation="MKNHAFAPARRSWMRTAGIMAAMAWGGLTLAPGASAQAWPTRPV RIVIASSAGSTGDLLARMLAPRLESIWKQPVIVEAKPGASGIVGTEYVINAQDGHTLL LGTQTALMSKYTQKNLRFDPLTDLLPIAKVINYQMVIATNAPTAKRAGTLAELVALSK STQNGLFFAGNGPTSIFNLSMAIMNQGLGLRMAAVDFPSVSAMNLALLRDDAQVMVNT PSSVKGQIENGTVVPLAAVSTERYTNLPQVPTLKEATGYSGYVPLLWAGFFAPKGTPA SVVQKIDQDLRAVLDDKFRKQIESTFTGTTVSSSPPAFAKEIQAETAVWRDIFKAMDF KPE" sig_peptide 1585961..1586071 /locus_tag="Alide2_1497" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.581 at residue 37" misc_feature 1586003..1586962 /locus_tag="Alide2_1497" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1586138..1586953 /locus_tag="Alide2_1497" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1586980..1588197 /locus_tag="Alide2_1498" /db_xref="GeneID:10482534" CDS 1586980..1588197 /locus_tag="Alide2_1498" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387412.1" /db_xref="GI:330824109" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482534" /translation="MNGPLEGLRILDLTSNFMGPYASLLLADMGADVCKIEPPEGDTT RNVGPCRHKGMGAVFLHLNRNKRSIVLDLKHPDGLAALRRMLPRADVLLFSLRPQAMA RLGLSYEAVREINPRIVYCGAFGFGQNGPYADRPAYDNLIQAAVGLPMTQARKTGGPP TYVGTAIVDRMVGMATSNAILAALHCRSQTGYGQAVEVPMFETFAHFAMGDHLYGHTF VPPIGDWGYERMTAPERQPYRTADGYVSVEVYTDRHWQRLFAAVGRADMAADPRYADV HARARHMGELYDFLHRTFATRPSAEWVALLTEADIPAIAMNTPETLLDDAHMRAVGFF GEQEHPSEGLLRTIGIPQQWSESPATLRHPAPRLGEHTQELLGEYGFGQDEIGTLLWS HGARAAAPAETAA" misc_feature 1586980..1588146 /locus_tag="Alide2_1498" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1588198..1589127) /locus_tag="Alide2_1499" /db_xref="GeneID:10482535" CDS complement(1588198..1589127) /locus_tag="Alide2_1499" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bur:Bcep18194_C7486 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387413.1" /db_xref="GI:330824110" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482535" /translation="MTFNRLHFIRQTDLFTLRLFLSAVEEQQIGRAALRENIAASTAT KRIQDFEEIAGVPLLERTPKGVVATAAGEVIARYIRKLFADMDDMRAEITAFSEGLRG EVFVASARSIFVPYLSRELGAFARDFPQVDLVLRELENTTIVQAVLQGDADIGVFAIM PGLDLSGVQTHPYRTDRLVAVVPEAHALAGRASVSFEELMPENLIVISAMHAAFAKAA RKLGGEYKPKYSVRSTGVAMSLAQARLGVTVQPECDVLQARIDGVVAVPMSDSWAKRI VQIATPRDRHLSPAARALLEQLQSRPADAQPHA" misc_feature complement(1588204..1589091) /locus_tag="Alide2_1499" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1588909..1589079) /locus_tag="Alide2_1499" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1588234..1588797) /locus_tag="Alide2_1499" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(1588399..1588404,1588408..1588413, 1588429..1588446,1588717..1588737,1588741..1588743, 1588753..1588755,1588762..1588767,1588771..1588776)) /locus_tag="Alide2_1499" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(1589158..1590633) /locus_tag="Alide2_1500" /pseudo /db_xref="GeneID:10482536" gene complement(1590659..1592278) /locus_tag="Alide2_1501" /db_xref="GeneID:10482537" CDS complement(1590659..1592278) /locus_tag="Alide2_1501" /EC_number="1.1.99.1" /inference="protein motif:PRIAM:1.1.99.1" /note="KEGG: bur:Bcep18194_C7484 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal" /codon_start=1 /transl_table=11 /product="Choline dehydrogenase" /protein_id="YP_004387414.1" /db_xref="GI:330824111" /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR007867" /db_xref="GeneID:10482537" /translation="MEIYDHIVVGAGSSGCVVASRLSEDPQVRVLLIEAGGAMDAFWV NTPAGMAKLFGSERFNWRFKTQPVPTLGGRQVQWDRGKGLGGSSSINGMIYMRGQPED YDQWARLGNAGWGWDEVLPYFKRSENNARGANAFHGGDGPLSVTDPVEIHPAAEDFIA SCVNAGIPRSRDLNSPPHPAVGVRQYTIKGGRRHTTYKAFIEPVRHRSNLTILTGAHV LRVLFDGDEATGVEVLQGGQRRQIAAAREVILSAGALASPQLLMLSGIGGAARLQRHG IAVRRELPGVGSNLQDPWYASLAWRCTPGSSVNHRLSGLRKYLEGARYVFTHGGYLAL GAAPVTAYARSEPGARVDLQLSFNPMSFSATPSGEVAADGYPGMSASVVLLTPESRGH MELASGDPLAAPLFHPNYFSDESDVRRHVAGLRQLRQIIHTPPLGQRVVEEIKPGPAC ASDEQLFEYLKRFGGTGWHPVGTCKMGSDGEAVVDARLRVRGLQRLRVIDASIMPVIP TGNTNAPCIMIGEKGVDMILEDALAPRAIAA" misc_feature complement(1590674..1592278) /locus_tag="Alide2_1501" /note="choline dehydrogenase; Validated; Region: PRK02106" /db_xref="CDD:179368" misc_feature complement(1590710..1591120) /locus_tag="Alide2_1501" /note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199" /db_xref="CDD:191229" gene 1592518..1593465 /locus_tag="Alide2_1502" /db_xref="GeneID:10482538" CDS 1592518..1593465 /locus_tag="Alide2_1502" /inference="similar to AA sequence:KEGG:Veis_2943" /note="KEGG: vei:Veis_2943 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387415.1" /db_xref="GI:330824112" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482538" /translation="MNKRAFAAALALAGLLPLAATAQSFRQPIKVIVPYAAGGGTDVL ARLLGQGLSKELGQPVIIENKAGASGQIGTQFVQAAAPNGATLLFTVDHSLITVPLTT PSAKYDAEADFTALGQAARSVWTLSIPATAPYKDFAGFAAAAKAEAPLRSFGVPFTGG APTLIGEALGRHWSVAMEAIPFSGSGPVIQNVMAGQVPAGITGMPEAMAVHRSGKARV VAVSGAQRSALLPDVPTFKELGIDGLEFHTFLGFFGPKNLPKEMAQEFNAALRKVLAE PAVLDKLGSMSLQPAPTTLAEARAEVAAMERFWKKALQK" sig_peptide 1592518..1592586 /locus_tag="Alide2_1502" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.978 at residue 23" misc_feature 1592650..1593399 /locus_tag="Alide2_1502" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1593538..1594158 /locus_tag="Alide2_1503" /db_xref="GeneID:10482539" CDS 1593538..1594158 /locus_tag="Alide2_1503" /inference="similar to AA sequence:KEGG:Bcep18194_C6760" /note="KEGG: bur:Bcep18194_C6760 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387416.1" /db_xref="GI:330824113" /db_xref="GeneID:10482539" /translation="MMDGPAAGAPEPAPTGEVTREELHRRSIDLRGFRRSDGLFEVEA RLTDRKTHDFAPLSGGRHVAAGDTIHDHGLRVVFGADMVIREISTDMRASPYRECLGG GDTLQAMVGVRIGPGWNGELRKRLPAGNTCTHLKEMMIPLASAAFQLIYSVRTSNVIE VNAEGRPRKIDSCYAYGASRELVALQWPAFHRPAAAQDTKDDQGNA" misc_feature 1593607..1593981 /locus_tag="Alide2_1503" /note="Protein of unknown function (DUF2889); Region: DUF2889; pfam11136" /db_xref="CDD:151580" gene 1594155..1595594 /locus_tag="Alide2_1504" /db_xref="GeneID:10482540" CDS 1594155..1595594 /locus_tag="Alide2_1504" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C6759 MmgE/PrpD" /codon_start=1 /transl_table=11 /product="MmgE/PrpD family protein" /protein_id="YP_004387417.1" /db_xref="GI:330824114" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10482540" /translation="MTEHTTGAPPRLAGELVADPASVELTASIAGHVARVANAPLTEA DTEAARKLLLDNFIVSLWGATRPWTREIAQWTRRFAGTGASPVLGTDWLADPSIAALV HGTAAHSYELDDTHDETLSHPGAAIIPAALAVAAATDAPQAGLLRALAAGYEAMALLG ASAGGMETVHRGFHPTSVFGSFDAATACICLHARQRGEAVTRDLLIAAWGHALSQACG AMQFSAEPGGGEVKRVHAGYGARNGVLAAEFAHLPAVTAPRRVAEGAYGLAALFGGPL RHVAPAQRLQIHNISFKPYACCRLFHSTIDALREVTDGFTTPPEAIERITLSGPRLIA DQHMLPRPRGSMAAQYSAPFIVGATLAYGPQRYDAYGDEHMDDAAILAIADKLRFEPS EELTRTYYPHRFATGVRLRLADGSERYAMVADSMGTPRKPLTTEQILAKGLGLEGGGT ALGERLLQGIRDGSQGGRALAQLLARSLR" misc_feature 1594239..1595468 /locus_tag="Alide2_1504" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene complement(1595639..1596433) /locus_tag="Alide2_1505" /db_xref="GeneID:10482541" CDS complement(1595639..1596433) /locus_tag="Alide2_1505" /inference="protein motif:PFAM:PF09339" /note="KEGG: bbr:BB0608 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004387418.1" /db_xref="GI:330824115" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10482541" /translation="MSMQKQAGDSAALMTVERGLEVLRAFRSDRTPLTNTELVRRTGL PKATVSRLTSTLLQVGFLRLVPGKREFELSAGALGIGHAYLATNEMLQAAQPLMQELA DRLDVSVALGIQDGIDMLYVGYRVSRKVATLRLGVGSVLPMGATSIGRAYLWGLPPAQ RRQLIDEHKRRAGAQGEALERAIEASFAELEARGTCAVLGGYQRGTYGVALPIRAGSE GVPMSLSCGRADVDLDLEAERERIAPALKETAVRLEALLGRFNGYL" misc_feature complement(1595660..1596391) /locus_tag="Alide2_1505" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(1596125..1596391) /locus_tag="Alide2_1505" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1595684..1596046) /locus_tag="Alide2_1505" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene complement(1596430..1597263) /locus_tag="Alide2_1506" /db_xref="GeneID:10482542" CDS complement(1596430..1597263) /locus_tag="Alide2_1506" /inference="protein motif:PFAM:PF09339" /note="KEGG: bpa:BPP0603 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004387419.1" /db_xref="GI:330824116" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10482542" /translation="MQPPPSPLPDCAAAAGGRPVVAPFARALSVLSAFAPGERWLGNG DLVERTGLPASTVTRMTRTLVTLGYLRYAADTRRFCLSPSALTLGYRAAADAEIHRAA NQRMRLFAERHQVNVHLSSRDRLDLVVIDSCRTSALPAALQPGIGTRLGLASSAAGWA LLASLPEAERDYLLQSAEHHPPHGGREHERELAWGQLRRRSREAIGQVRAGGFCVALG ESGQPMTMVAAPIQVAGRAPLAVSCLGPASLMGRARSVRELGPALVRMAQEIQLSQGR P" misc_feature complement(1596439..1597188) /locus_tag="Alide2_1506" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(1597048..1597188) /locus_tag="Alide2_1506" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1596454..>1596660) /locus_tag="Alide2_1506" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 1597376..1598245 /locus_tag="Alide2_1507" /db_xref="GeneID:10482543" CDS 1597376..1598245 /locus_tag="Alide2_1507" /inference="protein motif:PFAM:PF00561" /note="PFAM: Alpha/beta hydrolase fold-1; KEGG: bxe:Bxe_A2766 non-heme peroxidase" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004387420.1" /db_xref="GI:330824117" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10482543" /translation="MTTRKPLPGTPSPMHAWMGAHGNLLCGDSWGDPSAPPVLLLHGG GQTRHSWRRTALSLARAGFHAVSFDARGHGDSDWVGDGGYGEAAMAEDLACVVRALGG ARPVLIGASMGGITSLAAVGGGVVDAAALILADVAHVSSTDGAGRVHAFMLRHARGFA SLEEAADAVAEYRGGHRRRGSLAGLGKNLRQGAGGRLYWHWDPRFLEGRSEDWAARAE RLTRCVRQVTVPTLLVRGAQSDVVTPEAVREFLALCPHASHVDVADAGHMLTGDDNDV FGQVAIGFIRQKT" misc_feature 1597460..1597669 /locus_tag="Alide2_1507" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature 1597487..1598206 /locus_tag="Alide2_1507" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene complement(1598285..1599436) /locus_tag="Alide2_1508" /db_xref="GeneID:10482544" CDS complement(1598285..1599436) /locus_tag="Alide2_1508" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: bbr:BB0611 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387421.1" /db_xref="GI:330824118" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482544" /translation="MIRDQETLNGLLDTIARFVRERLIPNEELVAETDEIPADIVADM KAMGLFGLTIPEKFGGLELTMEEEVLAVFELCRASPVFRSLLGTTVGIGSQGILFDGT PEQQAKYLPKLATGEMMASFALTEPEAGSDAASLRTTAIRDGDFYVVNGTKRFITNAP QAGMFTLMARTNPANKGAGGVSAFIVEAGTPGISFGKRDKKMGQKGAHTCDVIFENVR VPAANLIGLKEGQGFKTAMKVLEKGRIHIAAVAVAVAERMLDMALRYAAERRQFGQPI GNFQLVQAMLADSKAEIYAARCMVLDAARRRDDKLPNSTEASCAKMFATEMCGRVADR AVQIFGGAGYMSEYAIERFYRDVRLFRIYEGTTQIQQTVIAKNMLREIQ" misc_feature complement(1598294..1599406) /locus_tag="Alide2_1508" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(1598297..1599406) /locus_tag="Alide2_1508" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(1598333..1598335,1598339..1598341, 1598345..1598353,1598966..1598968,1598972..1598974, 1599065..1599067,1599071..1599073,1599161..1599163)) /locus_tag="Alide2_1508" /note="active site" /db_xref="CDD:173838" gene 1599672..1600547 /locus_tag="Alide2_1509" /db_xref="GeneID:10482545" CDS 1599672..1600547 /locus_tag="Alide2_1509" /EC_number="4.2.1.107" /inference="protein motif:PRIAM:4.2.1.107" /note="KEGG: bpa:BPP0606 putative enoyl-CoA hydratase; PFAM: MaoC-like dehydratase" /codon_start=1 /transl_table=11 /product="3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase" /protein_id="YP_004387422.1" /db_xref="GI:330824119" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10482545" /translation="MPIDPRRLLARPFPAIEHAYTQRDTQLYALGLGLGADPLDAGQL RYVYEGQDGAALRAMPTMANILAYPGFWAREPDTGITWQKLLHAEQEIHIHAPLPAAG RVRGQTRITGLWDRGEGKGAFLQQTREISDAATGQPLATVKQLSLLRGDGGFGEGGSA GAPPAPHAMPEGEPDHVCDLATPAQLALIYRLSGDLNPLHADPAVAAAAGFPRPILHG MALMGVAAHAVLRTVLGYDDTRLEGMRVRFTAPAWPGDTLRTEMWVQGGTVSLRTTAL ERGAVVLNNARVDLR" misc_feature 1599675..1600544 /locus_tag="Alide2_1509" /note="enoyl-CoA hydratase; Region: PLN02864" /db_xref="CDD:178455" misc_feature 1600194..1600544 /locus_tag="Alide2_1509" /note="HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit; Region: HDE_HSD; cd03448" /db_xref="CDD:48043" misc_feature order(1600224..1600226,1600233..1600235,1600242..1600247, 1600257..1600259,1600263..1600265,1600275..1600277) /locus_tag="Alide2_1509" /note="dimer interaction site [polypeptide binding]; other site" /db_xref="CDD:48043" misc_feature order(1600236..1600238,1600254..1600256,1600260..1600262, 1600269..1600271,1600320..1600322,1600326..1600328, 1600335..1600337,1600344..1600346,1600356..1600358, 1600392..1600394,1600401..1600403,1600407..1600409, 1600413..1600415,1600455..1600457,1600482..1600484, 1600488..1600490,1600515..1600517,1600533..1600535) /locus_tag="Alide2_1509" /note="substrate-binding tunnel; other site" /db_xref="CDD:48043" misc_feature order(1600239..1600241,1600251..1600256,1600260..1600262, 1600269..1600271,1600314..1600316,1600323..1600328) /locus_tag="Alide2_1509" /note="active site" /db_xref="CDD:48043" misc_feature order(1600254..1600256,1600260..1600262,1600269..1600271, 1600323..1600325) /locus_tag="Alide2_1509" /note="catalytic site [active]" /db_xref="CDD:48043" misc_feature order(1600347..1600349,1600356..1600358,1600386..1600388, 1600392..1600394) /locus_tag="Alide2_1509" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:48043" gene 1600578..1601327 /locus_tag="Alide2_1510" /db_xref="GeneID:10482546" CDS 1600578..1601327 /locus_tag="Alide2_1510" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0613 putative short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004387423.1" /db_xref="GI:330824120" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR020842" /db_xref="GeneID:10482546" /translation="MDLGLTGKVAIVTGSARGLGAATARRLAQEGAKVVITDINGELA QATAKALQDEGLAAHCIVGDITKGADVQRLVDETVAHFGGVYILVNNAGAPRDKYLVK MSEDDWDFVMAVMLKGAFLAAKAVMPHFIDQGWGRIINISSRAHLGNPTQANYSAAKA GLIGMAKALSKEEGRYGVTCNCVAPGFMETEMVKALPTYETIKDNAIAAQPVKRVGQP DDIADAVAFLASERAGFISGEVLHVTGGRYG" misc_feature 1600587..1601321 /locus_tag="Alide2_1510" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1600599..1601315 /locus_tag="Alide2_1510" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(1600617..1600619,1600623..1600628,1600632..1600634, 1600689..1600697,1600848..1600856,1600998..1601006, 1601040..1601042,1601052..1601054,1601130..1601141) /locus_tag="Alide2_1510" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1600920..1600922,1601004..1601006,1601040..1601042, 1601052..1601054) /locus_tag="Alide2_1510" /note="active site" /db_xref="CDD:187535" gene 1601408..1602613 /locus_tag="Alide2_1511" /db_xref="GeneID:10482547" CDS 1601408..1602613 /locus_tag="Alide2_1511" /EC_number="2.3.1.9" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: Thiolase; KEGG: bur:Bcep18194_C7332 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004387424.1" /db_xref="GI:330824121" /db_xref="GO:0005524" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10482547" /translation="MKRAAIVSPLRTPVGAFGGALKGIPVEELGATVARAIVEATGLD AARIDDVVFAQSYASGETPCTGRWVALQAGFPIEVAGMQLDRRCGGGVQALATAAMMV QTGAADVVMAGGVESMSNVEYYTTDMRWGKRAGTVKLHDRLDRGRERSQPESRFGRIN GMIETAETLAREYQISREEADRFAARSHQRAAAAQKAGHFDAEIVPVTVPQRKGDPLL VKQDEGVRGDTTAESLAGMRAIMKDGIVTAGNACQQNDAAAACLVVAEDKLAELGLTP IGWITGWAAAGCDPARMGIGPVPAVQKLLARTGLKFDQMDLIELNEAFACQALACVKG WGSSMEALEDRLNVNGSGISLGHPVGATGVRIMSTLLHEMQRRKARYGLETMCIGGGQ GIAMVFERA" misc_feature 1601408..1602610 /locus_tag="Alide2_1511" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK06205" /db_xref="CDD:180468" misc_feature 1601420..1602607 /locus_tag="Alide2_1511" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(1601474..1601476,1601555..1601557,1601597..1601599, 1601606..1601608,1601618..1601620,1601651..1601662, 1601684..1601686,1601705..1601710,1601717..1601719, 1601762..1601764,1602254..1602256,1602260..1602262, 1602266..1602268,1602326..1602328,1602575..1602580) /locus_tag="Alide2_1511" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(1601669..1601671,1602476..1602478,1602566..1602568) /locus_tag="Alide2_1511" /note="active site" /db_xref="CDD:29411" gene 1602627..1604564 /locus_tag="Alide2_1512" /db_xref="GeneID:10482548" CDS 1602627..1604564 /locus_tag="Alide2_1512" /EC_number="6.2.1.1" /inference="protein motif:PRIAM:6.2.1.1" /note="KEGG: bbr:BB0615 AMP-binding enzyme; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="acetate--CoA ligase" /protein_id="YP_004387425.1" /db_xref="GI:330824122" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10482548" /translation="MDSTKIWQPGERELQKSGVVQLMRALGVPTYEELMRVSVAEPER YWNTVMRECAVQWDVQPTGYVDLSRGPQFPSWFPGGRLNWVNTIYGWARNPATARQTA VLGEREDGSASALTYAELEARVRDFAAGLARQGVQQGDRIGLLMENGVEATISLLAIV HLGALVVPLFSGFGVDAIVARLSAAEARMVIASTGFSRRTKRVDVQGALRDAWRQLPL LENVVWKRAEGEAAQDARDLDWQQVATVAQGQGQDAVVVTPDTPFMVIYTSGTTGKPK GVVHTHGSFPVKIAHDSLVHFDVHPGDVYCWPADMGWIAGTLVLGCALLRGATLVCYD GAPDYPDWSRMSRVVERHRVTHFGSAPTLIRGMASNEALALAGDRSTVRLLITAGEGI APEHFNWFQQRFGDGTAPLINYTGGTEASGALLASVPIRPIPPSGFNTVSPGVAVDVV DPSGKSVTGEVGELAIRAPFVGMTQSFWHDDERYLETYWQAIPGIWVHGDLALRTPEG NFFMMGRSDDTLKVAGKRLGPAEVEEVVLELADVAEAAAIGVADAEKGQKLVVFVVPK PAAAARAGELQAAVAAHVDKRLGRPFRPGKVHVVGQLPKTRSSKIMRRVIRSVYCGLP PGDLSSLDNPAALDEVRAAAA" misc_feature 1602714..1604555 /locus_tag="Alide2_1512" /note="acetate--CoA ligase; Region: Ac_CoA_lig_AcsA; TIGR02188" /db_xref="CDD:162753" misc_feature 1602714..>1602875 /locus_tag="Alide2_1512" /note="Domain of unknown function (DUF3448); Region: DUF3448; pfam11930" /db_xref="CDD:192884" misc_feature 1603074..1604477 /locus_tag="Alide2_1512" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 1604570..1605418 /locus_tag="Alide2_1513" /db_xref="GeneID:10482549" CDS 1604570..1605418 /locus_tag="Alide2_1513" /inference="protein motif:PFAM:PF09339" /note="KEGG: bpa:BPP0610 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004387426.1" /db_xref="GI:330824123" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10482549" /translation="MTARAAAAGAAGPLPALAGITAWLRPEPGLTVVTPLVRALVIIS AFAPQERWLGIGQLAQRTGLPPSTVTRIAQSLVHLGYLLYDGDERKYRLSPAVLGLGY AAIAHSAIQGLAGEPMAAFARQHKVHVCLAARDRLDLVVLECRRSVESPIALPLHVGM RLGLAQSPMGWALLAALPELERSYLLENVERRMSREWSRLRRRVCEGTAQVYEKGYCA AIGEWEPDLGTLAAPVLLEGNAPFVLACIGASQGMTRARVERELGPRLLAMAGELQSD FNAIGH" sig_peptide 1604570..1604626 /locus_tag="Alide2_1513" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.990 at residue 19" misc_feature 1604666..1604938 /locus_tag="Alide2_1513" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1604675..1605388 /locus_tag="Alide2_1513" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 1605020..1605388 /locus_tag="Alide2_1513" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 1605459..1606640 /locus_tag="Alide2_1514" /db_xref="GeneID:10482550" CDS 1605459..1606640 /locus_tag="Alide2_1514" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: bbr:BB0617 CaiB/BaiF family protein; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387427.1" /db_xref="GI:330824124" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482550" /translation="MKVLEGIKVLDFGRFIAGPYCAALLADYGAEVIRIDRVEGGEDR YIVPVTEGGEGAMFLQLNRNKRSLTLDLASPEGRDIVRKLVAGADVVVANMPPRTLKS LGLDYESLCAVRPDIILVAPNAFGTSEAVRDRVGFDGVGQALSGAVHIAGTPGQPQKA MVPVVDFATSFACALGTVLALYERKQSGKGQEVNASLLCTGLNMASGALIEEALLGLD RPATRNRASGYAPSDIFKARDGWFITQVIGPAMFRNWTRLVGRPELLDDPRFADDRLR GEHGEFLSGVMSDWCRDKTLGECLALLEKARIPAGRVNSPRQALQDETVQAADLIHWM DYPGAPRQVPIFATPVSLSRTPPEIRQRAPLNGEHTDEILAGIGLGAQEIAGLRQRNI V" misc_feature 1605468..1606637 /locus_tag="Alide2_1514" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1606652..1608082 /locus_tag="Alide2_1515" /db_xref="GeneID:10482551" CDS 1606652..1608082 /locus_tag="Alide2_1515" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C7308 MmgE/PrpD" /codon_start=1 /transl_table=11 /product="MmgE/PrpD family protein" /protein_id="YP_004387428.1" /db_xref="GI:330824125" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10482551" /translation="MSQTIIERLAGFSAATDVARLPAEVIEECKRDVLDTLGCALAGI DHPKGRIGIEAGKRLGGTGGTATIIGSGEKSTPHGAAFANGELANALDADSVLLPGHV SPYVLPGAFAMAEAQQRSGRELIAAVAVSHEISYRLGAAMSGYRDTQDGKPSQSSVVG YSSTVFGATASAGKLRGLDAEKLANALGIAAATAPVNSQRAWFMHAPTATIKYQMAGA LTNAALSAVDMGDLGHRGDLLLLDDEEHGYPRYVGTARWSPELLTAGLGEDWRFPAFQ MYKPYPHCRVMHAPLDLLIDLVARHDIKVEEIEGITSYGEGWAYELPCFTNRKILLQH DAQFCFAHGLAVAAHRIPPGRQWQDEAVVFNPSVMALMNKVQLKTHPTYFQSISADIL SRPSRLEIQARGQTFAAEKGFPKGMRSSDPSTYMTNDELAAKFRAFVDGLLPATTIEQ VIDSVLNLERVEDFGAVMRLMVRTSA" misc_feature 1606652..1608037 /locus_tag="Alide2_1515" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene complement(1608079..1609008) /locus_tag="Alide2_1516" /db_xref="GeneID:10482552" CDS complement(1608079..1609008) /locus_tag="Alide2_1516" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bur:Bcep18194_C7296 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387429.1" /db_xref="GI:330824126" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482552" /translation="MDLKQLRAFVTVAETGNVTRASALLNLVQPAVSRQLRLLEEDLG TELFERGRHGMQLTASGKTMLEYARRILGEVARAKAEIQPTEGPVAGIVSIGLLASTS DLLATLLATEVARRYPHIRLRLTIGYAGHLQDWLEAGDVDAALLYGQKETPALHVKAL LEESLWVVAAPAARLSRKRPVPLERVAREPFILPAAPQGLRAAIEHAATEAGLTLQVF AETNALSVQKELVAQGHGWTILPAVGVTQEVERGLLSAAPLASPDLTRTIVLAAPSSR QATAPVRCVVGVLMDCVKSTFEQGRWPDARWLG" misc_feature complement(1608112..1609008) /locus_tag="Alide2_1516" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1608823..1609002) /locus_tag="Alide2_1516" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1608142..1608735) /locus_tag="Alide2_1516" /note="The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold; Region: PBP2_Nac; cd08433" /db_xref="CDD:176124" misc_feature complement(order(1608310..1608315,1608319..1608324, 1608340..1608357,1608631..1608651,1608655..1608657, 1608667..1608669,1608676..1608681,1608685..1608690)) /locus_tag="Alide2_1516" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176124" gene 1609118..1610284 /locus_tag="Alide2_1517" /db_xref="GeneID:10482553" CDS 1609118..1610284 /locus_tag="Alide2_1517" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004387430.1" /db_xref="GI:330824127" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482553" /translation="MSALSAPDQYQEIRDAVRGLCQQFPAEYHRKIDEARGYPEEFVT ALTKAGWLAALIPQEFGGPGLSMAEASVIMEEINRSGGNSGACHGQMYVMNTIVFSGT DAQKQKYLPRIAAGDLRVQSMGVTEPTTGSDTTKLKTTAVKKDGRWVVNGQKVWISRV QHSDLLILLARTTPVEQVQKKSDGLSCFIVELDKAIGNGLTVRPILNMVNHETNELFF DNLELPEDALLGTEGKGLKVIFDGLNAERTLIAAECIGDGYWFLEKARDYANERKVFG RPIGQNQGIQFPLAESFIELEAANLMRWRACQKIDARENAGTEANMAKYLAAKASWEA ANACLQTHGGFGFACEYDVERKFRETRLYQVAPISTNMILNHVAQHTLGLPRSF" misc_feature 1609136..1610281 /locus_tag="Alide2_1517" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1609139..1610254 /locus_tag="Alide2_1517" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature order(1609274..1609276,1609484..1609486,1609490..1609492, 1609583..1609585,1609589..1609591,1610210..1610218, 1610222..1610224,1610228..1610230) /locus_tag="Alide2_1517" /note="active site" /db_xref="CDD:173838" gene 1610307..1611056 /locus_tag="Alide2_1518" /db_xref="GeneID:10482554" CDS 1610307..1611056 /locus_tag="Alide2_1518" /inference="protein motif:PFAM:PF01012" /note="KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein subunit alpha/beta" /protein_id="YP_004387431.1" /db_xref="GI:330824128" /db_xref="InterPro:IPR014730" /db_xref="GeneID:10482554" /translation="MKILVPVKRVVDYNVKVRVKSDGTGVDIANVKMSMNPFDEIAVE EAVRLKEKGAATEVIAVSCGVAQCQETLRTAMAIGADRAILVETDAELQPLAVAKLLK ALVDKEQPGLIILGKQAIDDDANQTGQMLAALADLPQATFASKVEIAGDKANVTREID GGLETLSLGLPAVVTTDLRLNEPRYVTLPNIMKAKKKPLESVKPEDLGVQVAPRLKTL KVAEPAKRGAGVKVADVAALVEKLKNEAKVI" misc_feature 1610310..1610915 /locus_tag="Alide2_1518" /note="The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714" /db_xref="CDD:30169" misc_feature order(1610322..1610327,1610412..1610414,1610421..1610423, 1610493..1610495,1610649..1610654,1610658..1610663, 1610676..1610687) /locus_tag="Alide2_1518" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:30169" gene 1611057..1612001 /locus_tag="Alide2_1519" /db_xref="GeneID:10482555" CDS 1611057..1612001 /locus_tag="Alide2_1519" /inference="protein motif:PFAM:PF00766" /note="KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein subunit alpha" /protein_id="YP_004387432.1" /db_xref="GI:330824129" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR014731" /db_xref="GeneID:10482555" /translation="MSVLVIAEHDNASIKGATLNTVAAARQISMFADGQVHVLVAGSQ SAAAAAAAAQIEGVVKVLHADGEALAHALAENVAAQVLAVAGRYSHILFPATAGGKNA APRVAAKLDVAQVSDITKVVAVDTYERPIYAGNAIATVQGTDATQVITVRTTGFDAAP ATGGAASVEAIAAVADSGKSRFVGSEIAKSDRPELTAAKIIVSGGRALGSAEKFNEVI TPLADKLGAAIGASRAAVDAGYAPNDLQVGQTGKIVAPQLYIACGISGAIQHLAGMKD SKVIVAINKDPEAPIFSVADYGLEADLFQAVPDMVKAL" misc_feature 1611060..1611998 /locus_tag="Alide2_1519" /note="electron transfer flavoprotein subunit alpha; Provisional; Region: PLN00022" /db_xref="CDD:177660" misc_feature 1611060..1611536 /locus_tag="Alide2_1519" /note="The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_alpha; cd01715" /db_xref="CDD:30170" misc_feature 1611630..1611890 /locus_tag="Alide2_1519" /note="Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766" /db_xref="CDD:189709" gene 1612090..1612938 /locus_tag="Alide2_1520" /db_xref="GeneID:10482556" CDS 1612090..1612938 /locus_tag="Alide2_1520" /inference="similar to AA sequence:KEGG:BB0622" /note="KEGG: bbr:BB0622 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387433.1" /db_xref="GI:330824130" /db_xref="GeneID:10482556" /translation="MSQESPESFDAWVGRTDESADQVTQAPIRLMQATLDAASACALP PDLPPLWHWLYFLPGERQSNIGPDGHPKRGGFLPPISLPRRMWAGGRLQFLRPPAVGE RVRRVSLIKSVQTKDGRSGRLVFVTVQHKISDTQGAVIHEEQDIVYRDAPAPGAPAPQ PTAAPTDEQFGRTVTPDPVLLMRYSALTFNGHRIHYDRPYAMQEEGYPGLVVHGPLIA TLLMEELRRAHPGRAIRGFEFKAVSPLFDTAPFSVNGKLEGNTARLWARGPQGQLAMQ ASADIE" misc_feature 1612102..1612926 /locus_tag="Alide2_1520" /note="Uncharacterized conserved protein [Function unknown]; Region: COG3777" /db_xref="CDD:33572" misc_feature 1612588..1612935 /locus_tag="Alide2_1520" /note="The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509" /db_xref="CDD:193847" misc_feature order(1612726..1612731,1612810..1612821) /locus_tag="Alide2_1520" /note="active site 2 [active]" /db_xref="CDD:48035" misc_feature order(1612744..1612746,1612753..1612758,1612765..1612767, 1612786..1612794) /locus_tag="Alide2_1520" /note="active site 1 [active]" /db_xref="CDD:48035" gene 1612951..1614150 /locus_tag="Alide2_1521" /db_xref="GeneID:10482557" CDS 1612951..1614150 /locus_tag="Alide2_1521" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: bur:Bcep18194_C7301 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387434.1" /db_xref="GI:330824131" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482557" /translation="MQAPTPRKGPLSGMTVVTLEHAIAAPFCTRQLADLGARVIKVER PGVGDFARAYDHRTRGLASHFVWTNRSKESLTLDLKQPQAQQVLGELIAGADVLVQNL APGAAARMGLSFEALHARHPRLIVCDISGYGADGPYRDKKAYDLLIQSEAAFLSITGT KDEPCKAGNSIADIAAGMYAYTGILSALLQRSLTGEGSHVEVSMLEALAEWMGFPMYY AYDGQQPPGRNGAAHATIYPYGPFTAGDGKVVMLGLQNEREWKLFCDVVLRRPELAAD PRFDANVRRTENRAALKDAIEQTFASLTAQEVIARLDEAQIANAAVNQVGDLWAHPQL HARQRFRPIGSPAGELQALLPPATVGSFDARMDPVPALGEHSEAILRELGRSAADIEQ LRAAGVI" misc_feature 1612960..1614147 /locus_tag="Alide2_1521" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1614153..1614998 /locus_tag="Alide2_1522" /db_xref="GeneID:10482558" CDS 1614153..1614998 /locus_tag="Alide2_1522" /inference="protein motif:PFAM:PF03328" /note="PFAM: Aldehyde-lyase domain; KEGG: bur:Bcep18194_C7302 HpcH/HpaI aldolase" /codon_start=1 /transl_table=11 /product="HpcH/HpaI aldolase" /protein_id="YP_004387435.1" /db_xref="GI:330824132" /db_xref="GO:0016830" /db_xref="InterPro:IPR005000" /db_xref="GeneID:10482558" /translation="MTASSVNHARSLLFVPATKPERFAKALDSGADCIIIDLEDAVAE GSKDGAREQLAQHLPQLTADQRARTVVRINAAGTPWHEADLALLRQWTGQGVAVMLPK SEEPAALHGVAQVLGEGANIVALVESLAGLDALDLIARVPQVVRLAFGHLDFQLDLGM RASVEEPELAFARNALVAASRRARMPAPIDGVTTDTGSAERLAADARRARAFGFGGKL CIHPAQVAGVNEALGYSEAEQAWALRVLEEAARRGGEVFSLDGRMVDLPVIRAAEAIA ASIRK" misc_feature 1614183..1614956 /locus_tag="Alide2_1522" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene 1615059..1616778 /locus_tag="Alide2_1523" /pseudo /db_xref="GeneID:10482559" gene complement(1616889..1617635) /locus_tag="Alide2_1524" /db_xref="GeneID:10482560" CDS complement(1616889..1617635) /locus_tag="Alide2_1524" /inference="protein motif:PFAM:PF00005" /note="KEGG: jan:Jann_2264 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="ABC transporter-like protein" /protein_id="YP_004387436.1" /db_xref="GI:330824133" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482560" /translation="MNHPINQSAAHALAIDRLEVHYQGITALRGVSLQIKQGEIFTLI GPNGAGKSSLVNAVTGIVPSTGSIEFGGREFNRLPSYQRARLGVIQVPEGRRVIAPLS VLENLMLGREALGARKGDVQADLDRVFALFPILAERRQQLSGTLSGGQQQMLAIGRAL MGHPRVLLLDEPSLGLAPVIIADVFRAIRRLNEEGMTIFLVEQNARLALETAHRAAVL EQGRIVKQGEADVLAHDPEVEEHYFGQAAH" misc_feature complement(1616904..1617608) /locus_tag="Alide2_1524" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature complement(1616931..1617599) /locus_tag="Alide2_1524" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature complement(1617480..1617503) /locus_tag="Alide2_1524" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature complement(order(1617027..1617029,1617123..1617128, 1617357..1617359,1617477..1617485,1617489..1617494)) /locus_tag="Alide2_1524" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature complement(1617357..1617368) /locus_tag="Alide2_1524" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature complement(1617171..1617200) /locus_tag="Alide2_1524" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature complement(1617123..1617140) /locus_tag="Alide2_1524" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature complement(1617105..1617116) /locus_tag="Alide2_1524" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature complement(1617021..1617041) /locus_tag="Alide2_1524" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene complement(1617800..1618564) /locus_tag="Alide2_1525" /db_xref="GeneID:10482561" CDS complement(1617800..1618564) /locus_tag="Alide2_1525" /EC_number="3.6.3.17" /inference="protein motif:PRIAM:3.6.3.17" /note="PFAM: ABC transporter-like; KEGG: jan:Jann_2265 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="monosaccharide-transporting ATPase" /protein_id="YP_004387437.1" /db_xref="GI:330824134" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482561" /translation="MSTAPTLQLDGVGKRFGGLPAVDGLSLSAPPGTITGLIGPNGAG KTTVINLIMGILKLTSGRILFNGKDVSTLEAADLARAGMARTFQNIRLVTEGTVLDNV LSGFHLHQRTGFWANLLGLPSARAEQAAHRAEAQALLERFGMAHLAEHRAGTLSYGHQ RRIEMMRALAMRPQLLLLDEPVAGMNDTEASELGHIFSQVAASGVAILLVEHNMRFVT QVCSHLYVTASGRLIAQGAPDAVLADPVVIEAYLGS" misc_feature complement(1617803..1618558) /locus_tag="Alide2_1525" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature complement(1617824..1618546) /locus_tag="Alide2_1525" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature complement(1618427..1618450) /locus_tag="Alide2_1525" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature complement(order(1617929..1617931,1618025..1618030, 1618301..1618303,1618424..1618432,1618436..1618441)) /locus_tag="Alide2_1525" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature complement(1618301..1618312) /locus_tag="Alide2_1525" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature complement(1618073..1618102) /locus_tag="Alide2_1525" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature complement(1618025..1618042) /locus_tag="Alide2_1525" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature complement(1618007..1618018) /locus_tag="Alide2_1525" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature complement(1617923..1617943) /locus_tag="Alide2_1525" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene complement(1618561..1619454) /locus_tag="Alide2_1526" /db_xref="GeneID:10482562" CDS complement(1618561..1619454) /locus_tag="Alide2_1526" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: jan:Jann_2266 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387438.1" /db_xref="GI:330824135" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10482562" /translation="MIDYLLSYSSVLDHVLIYTLLAMSQAVVLRAGTFSIGPAAFAAI GAYTSAILAVTHGWSAPLAIASGTLLAGVVSALMAYPLSRLRGVFQALATLALVQVMV TIAQNWDSVTNGVLGISGIPKAATTGWLLLIVALCMLLTWTLGKFSLGRAMDVIRADE TVAVSLGIRVAYHQRLAMVLSGLFAGLAGALHAFNSYAISPEEFGFHMLVHALASSVL GGATSIWGPLVGAGVLTTLPEFVRFFADYRGVVQGALLMLIIIYLPHGIADTLRSWRY DRKVQREVALREGTLREGAPA" misc_feature complement(1618651..1619412) /locus_tag="Alide2_1526" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature complement(1618918..1618974) /locus_tag="Alide2_1526" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene complement(1619459..1620352) /locus_tag="Alide2_1527" /db_xref="GeneID:10482563" CDS complement(1619459..1620352) /locus_tag="Alide2_1527" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: jan:Jann_2267 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387439.1" /db_xref="GI:330824136" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10482563" /translation="MLIQQLLNGLVVGGTFAVFALGFTLLFGVNHILNMAYGSVFMWG AFAGLYAATVFHAPFIVALLVGMLAGGVLSVLLDFVAFRPLRRRHAPEFSYILTSIGA SIALVALAQKASNTAVWQFPADTFPVVIHEFLGLQVQRLQLIIVLSALVLVGALIYAL YYTGMGRRIRCVAHSEGTAQLLGINAEWVNIQVFFISGALAGFAGVLIGLAFNSVHFL MGEPFLMRAFVIIILGGLGSIAGSLVGGVIIGVVQTLAYAYISSAAADAIAFVILFVI ILIRPTGLFGKPGAVMRVQRQ" misc_feature complement(<1619669..1620328) /locus_tag="Alide2_1527" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature complement(1619768..1619824) /locus_tag="Alide2_1527" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene complement(1620431..1621564) /locus_tag="Alide2_1528" /db_xref="GeneID:10482564" CDS complement(1620431..1621564) /locus_tag="Alide2_1528" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: jan:Jann_2263 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004387440.1" /db_xref="GI:330824137" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10482564" /translation="MQCFQHAIRKLATAAALAASATLAAQAQDIPVVSIQSVTGPVAF AGANYQKAIRLAVEEANAKGGVNGRKINLMERDSASDKGQAINLAGQAADRDRAVLVL GPSATTEGVAVAPVFNDKKTPSLSFVTSDAILKPGPWMLKFQQAPSVVSPLVAKYVLE KTPIRKVAIVYDRVNEALIEYKNHFRDPFKAGGGTVVAEEAVVSSDSNFLPLATKLKG LDVDAVYFATYGEQSANIVLQLRQAGSGDKVRYIGTIAMVSQKFLEMTGPASEGSIAV SDYVAGIDRPLNKSFEAAYKARWGVEPDNWAASAYSLAQVALATLKEAGPNPTRDSVR EGYHKVRDVPIVGGSGVWNQKDRVPSYGAIVLVVKGGKFVPAP" sig_peptide complement(1621481..1621564) /locus_tag="Alide2_1528" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.981 at residue 28" misc_feature complement(1620449..1621480) /locus_tag="Alide2_1528" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(1620614..1621462) /locus_tag="Alide2_1528" /note="Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily; Region: PBP1_ABC_transporter_LIVBP_like; cd06268" /db_xref="CDD:107263" misc_feature complement(1621178..1621183) /locus_tag="Alide2_1528" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107263" gene complement(1621651..1622721) /locus_tag="Alide2_1529" /db_xref="GeneID:10482565" CDS complement(1621651..1622721) /locus_tag="Alide2_1529" /EC_number="1.1.1.14" /inference="protein motif:PRIAM:1.1.1.14" /note="KEGG: bur:Bcep18194_C7304 zinc-containing alcohol dehydrogenase superfamily protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like" /codon_start=1 /transl_table=11 /product="L-iditol 2-dehydrogenase" /protein_id="YP_004387441.1" /db_xref="GI:330824138" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="GeneID:10482565" /translation="MRGIVFRGDRKLEILDFPDPTPGPGDAIVEMKASGMCGSDLHFY RNKPAEVLKSLGFKDLASRGMAEDTPIIAGHEPCGQIVAVGSAVDPRVFKVGDRVTVF HYEGCNHCDHCRSGWTQMCSHGADIHGVIKHGGHAHYMKVPVTSLVHLPEEVSYATGA AISCGTGTAWGALLRLNVTARDTLAVFGLGPVGLSAVQLAAAMGAEVIGIDIAPDRVA RAREFGAAHVIDGSKADPIEEILKLTGGLGATCSMDCAGGDVPKQQAVRCTRPWGRIA LVAVGGNLHVDGMKDVIGKQRTIVGSYTFSEPSMKDCVTFVARHGVQVDRLFTDHWKL EQAQEAYRVFDGQAGGKGVFVF" misc_feature complement(1621654..1622721) /locus_tag="Alide2_1529" /note="Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064" /db_xref="CDD:31264" misc_feature complement(1621654..1622721) /locus_tag="Alide2_1529" /note="L-threonine dehydrogenase (TDH)-like; Region: THR_DH_like; cd08239" /db_xref="CDD:176201" misc_feature complement(order(1621810..1621818,1621885..1621890, 1621948..1621950,1621954..1621959,1622026..1622028, 1622074..1622076,1622086..1622091,1622143..1622160, 1622218..1622220,1622230..1622232,1622596..1622598, 1622605..1622613)) /locus_tag="Alide2_1529" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176201" misc_feature complement(order(1622230..1622232,1622497..1622499, 1622605..1622607,1622611..1622613)) /locus_tag="Alide2_1529" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176201" gene complement(1622739..1624226) /locus_tag="Alide2_1530" /db_xref="GeneID:10482566" CDS complement(1622739..1624226) /locus_tag="Alide2_1530" /inference="protein motif:PFAM:PF00171" /note="PFAM: Aldehyde dehydrogenase domain; KEGG: bur:Bcep18194_C6756 aldehyde dehydrogenase (acceptor)" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="YP_004387442.1" /db_xref="GI:330824139" /db_xref="GO:0016491" /db_xref="InterPro:IPR015590" /db_xref="GeneID:10482566" /translation="MPQDSALLPRYEHLYINGEWVTPIDGELVESIDPATGRPWAIAP LGGARDIDRAVEAARRAFPAWSRKPGHERAALLRRLADLFAAAIPELAVIESHDNGNL VREHRASLTAQVQWYQWFASLADKAQGTTIPIDDSVHAFTTRVPVGVVGAIIPWNAPL LATCLKVGAALAAGCTLVVKPAESTPVSALVLARLVHEAGFPPGVFNVVPGHGRTAGQ RLVEHPDVDKVSFTGSTATARRMVRDGADNLKRFTFELGGKAPHILFADADIDNAINA ATASAWRLTGQSCALGSRVLVERSIYDRVVEAFRERAKAVRVGLPWIDANHMGPQAHQ QQLDKTLSYIQYGKEDGAELVTGGRRIDTPELAAGYFVEPTVFAGVDNGMRIARDEIF GPVASLIPFDGEDEAIAIANDTPYGLTAGLWTRDVGRAHRVSSRIEAGMVWVNTYSFL RWSTPYGGFKASGWGRENGIDALDPYLETRTTVISTTGQFPNLYV" misc_feature complement(1622784..1624169) /locus_tag="Alide2_1530" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(1622775..1624136) /locus_tag="Alide2_1530" /note="Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like; Region: ALDH_DhaS; cd07114" /db_xref="CDD:143432" misc_feature complement(order(1622859..1622861,1622973..1622975, 1623051..1623053,1623057..1623059,1623360..1623362, 1623456..1623464,1623504..1623509,1623516..1623518, 1623525..1623536,1623678..1623683,1623687..1623689, 1623732..1623734,1623756..1623770)) /locus_tag="Alide2_1530" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143432" misc_feature complement(order(1623360..1623362,1623369..1623371, 1623462..1623464,1623756..1623758)) /locus_tag="Alide2_1530" /note="catalytic residues [active]" /db_xref="CDD:143432" gene complement(1624234..1624443) /locus_tag="Alide2_1531" /db_xref="GeneID:10482567" CDS complement(1624234..1624443) /locus_tag="Alide2_1531" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387443.1" /db_xref="GI:330824140" /db_xref="GeneID:10482567" /translation="MLHLHHLVRTPAGTAVPGALAAVESRARAVVFFGPSTSAGSVAV SPIFNGTKAPGPCFAIPGADPFNLM" gene complement(1624626..1625597) /locus_tag="Alide2_1532" /db_xref="GeneID:10482568" CDS complement(1624626..1625597) /locus_tag="Alide2_1532" /inference="similar to AA sequence:KEGG:BB0625" /note="KEGG: bbr:BB0625 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387444.1" /db_xref="GI:330824141" /db_xref="InterPro:IPR005064" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10482568" /translation="MISRRHLLQALPALPAALGPAIALAQPIAGKPIRLLVAASAGTT VDAAARFAAEPLSRIAGVPVVVENRPGAGGAIGSEAVAKSPADGHTLLFTGVTHFSAR YSGEASATYDPVKDFKAVARICSAALAVVVAADSPYKTMADLLAAMKARPGEVDYGSG GVGSTSHLCTVILNDLTRTSAKHIPYKGNTQAVTDTVAGIVAFTCQGSGGVLPLIKAG RLRALAVTSRNRWEALPDVPTGTECGIPGFEVASWMGAFAPAGAPDAMVALVSDGLAR IARSPEFKAFCDKQSMFVELVEHRAFQASLPAEDARWRRVAELVKRS" sig_peptide complement(1625520..1625597) /locus_tag="Alide2_1532" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.993 at residue 26" misc_feature complement(1624635..1625507) /locus_tag="Alide2_1532" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1624650..1625450) /locus_tag="Alide2_1532" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1625621..1627027) /locus_tag="Alide2_1533" /db_xref="GeneID:10482569" CDS complement(1625621..1627027) /locus_tag="Alide2_1533" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD; KEGG: bpa:BPP0622 hypothetical protein" /codon_start=1 /transl_table=11 /product="MmgE/PrpD family protein" /protein_id="YP_004387445.1" /db_xref="GI:330824142" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10482569" /translation="MTDSALPHCPPLEQALVRFVQDLRYEDLDAPAHAGVNRLMRDQL ALQIGISQMPWSQQLLKYAAAQQRPGASRVAASGLTMSAQDAAFVNGSYGHGFEYDDA HGPSYSHPGSCVIPAALALGEELGATLEEVVTALVAGYEVYTRIGLLAAPDLLQRGFH PHCVLSSFGAAAVAAKLRRLDAETTLHALAIALSHTSGTTEYTSTGGSIKRIHAGIGT KSGMAAAEMARAGITGPRAFLSGNKGFFKTFLQRGPGDGAEARFAPGQPFQIATVWLK AYCACYCTHAYIDALRPFAARRTEIADVHLKITPHFNVVVGTANANAYTPRNIEHVQF SLPIQAAFALLGLGNGYPVHRDYLAGKVDMAPVIALARGIRITEEPALEKSHPGKFVA DVTVAFQDGSSQHVFVADPIGTDTNPMPEQVQDAKFMELTEGVLGAGRARALLAALRA MDPAMKAADLTALCAAAQ" misc_feature complement(1625726..1627000) /locus_tag="Alide2_1533" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene complement(1627098..1628576) /locus_tag="Alide2_1534" /db_xref="GeneID:10482570" CDS complement(1627098..1628576) /locus_tag="Alide2_1534" /EC_number="1.2.1.8" /inference="protein motif:PRIAM:1.2.1.8" /note="KEGG: bur:Bcep18194_C7305 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain" /codon_start=1 /transl_table=11 /product="betaine-aldehyde dehydrogenase" /protein_id="YP_004387446.1" /db_xref="GI:330824143" /db_xref="InterPro:IPR015590" /db_xref="GeneID:10482570" /translation="MSQPTIPAFVQGTKQLLIGGQWVASSTGQHIDAINPANGELLCR IAQGNAQDVDRAVAAARKAFEGPWSRFTAHERRKLLLKVHDAIMDNFEELALIETLDM GAPLARTRGYKEWLSQLLQFYASQTGLAGSVTGTPMSIAPNFMALKHQVPVGVVGGII PWNGPLMGLWWIYGPALATGCTAVLKPAEDASLSSLRVSELMMEAGVPEGVINVVTGY GKDVGQALSEHMGVDRVAFTGSVGTAQAIVRASAGNLKRLQLELGGKSPDIVLADADL DKAVPGAAMGVFSNTGQVCVAGTRILVQRAIHDEFVQRLAAFAKTIKIGDGRESGVQI GPLISQRQLDRVMHYMDIGGKEAQLVHGGQRLTGGELGKGFFVEPTVFANVRNDMTIA REEIFGPVASVIPFDTVEDALRLANDTPYGLAGGVWTQNLGTAHKVSQGIRSGTVWVN CYGVIDPATGFGGTKMSGYGWKGGKEHVESFLYPKATYFNLV" misc_feature complement(1627110..1628534) /locus_tag="Alide2_1534" /note="NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961" /db_xref="CDD:196287" misc_feature complement(1627119..1628513) /locus_tag="Alide2_1534" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(order(1627194..1627196,1627308..1627310, 1627386..1627388,1627392..1627394,1627692..1627694, 1627788..1627796,1627836..1627841,1627848..1627850, 1627857..1627868,1628010..1628015,1628019..1628021, 1628064..1628066,1628088..1628102)) /locus_tag="Alide2_1534" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143395" misc_feature complement(order(1627692..1627694,1627701..1627703, 1627794..1627796,1628088..1628090)) /locus_tag="Alide2_1534" /note="catalytic residues [active]" /db_xref="CDD:143395" gene complement(1628665..1630158) /locus_tag="Alide2_1535" /db_xref="GeneID:10482571" CDS complement(1628665..1630158) /locus_tag="Alide2_1535" /EC_number="1.2.1.8" /inference="protein motif:PRIAM:1.2.1.8" /note="KEGG: bur:Bcep18194_C7306 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain" /codon_start=1 /transl_table=11 /product="betaine-aldehyde dehydrogenase" /protein_id="YP_004387447.1" /db_xref="GI:330824144" /db_xref="InterPro:IPR015590" /db_xref="GeneID:10482571" /translation="MTVAPPSPAEAARAQAIAWIGQAPKRLLIGGQWVDAVSGKTFET LNPATEQLLCRVAEAEQADVDAAVAAARKAFEAPSWSAMSPHSRTRALLRIADKVEAH IPELAAIESLDNGMPLWYATAAATACADIFRYYAGWCSKVLGTTIPSDGSTLIYTLRE PLGVCGQIIPWNVPVLMASIKFANALCCGNTVVLKPAELACLTSIRLAELIQETDLPP GVINVLPGFGPTAGAALAQHLGVDKIAFTGSTAVGKQVVRDATSNLKKVTLELGSKAP NVVFADADLDKAIATAVKTFCGNSGQVCSAGTRLFVQESIHDEVAERVASEAATWKAG DPFAADTKLGPLISARQRDRVWSYIGAGQESGAALRLGGKAWNGPGYFVEPTVFDNVK NGMKIAQEEIFGPVLSIIPFKDEDDAVLQGNETTYGLSAAVWTRDVSRAHKVVKALKA GRLWINTFGEADPAMAFGGYKQSGWGREFGAESIEAYTQAKSVMVRL" misc_feature complement(1628680..1630089) /locus_tag="Alide2_1535" /note="NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961" /db_xref="CDD:196287" misc_feature complement(1628680..1630062) /locus_tag="Alide2_1535" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(order(1628758..1628760,1628872..1628874, 1628950..1628952,1628956..1628958,1629247..1629249, 1629343..1629351,1629391..1629396,1629403..1629405, 1629412..1629423,1629565..1629570,1629574..1629576, 1629619..1629621,1629643..1629657)) /locus_tag="Alide2_1535" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143395" misc_feature complement(order(1629247..1629249,1629256..1629258, 1629349..1629351,1629643..1629645)) /locus_tag="Alide2_1535" /note="catalytic residues [active]" /db_xref="CDD:143395" gene complement(1630254..1631063) /locus_tag="Alide2_1536" /db_xref="GeneID:10482572" CDS complement(1630254..1631063) /locus_tag="Alide2_1536" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: bbr:BB0629 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387448.1" /db_xref="GI:330824145" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482572" /translation="MQYEDFQFILFDRKPDGVLLATLNRPEAMNATNNRMHWELTQLW GVVNDDPGVKAVVVTGAGERAFSAGGDLSVVEEMANSQEATMRVMKEASDIVYNMLAC DKPIISAINGTAVGAGLAVALLADVSVIAEDARLTDGHARLGVSAGDHAAIIWPLLCG MAKAKYYLMTADFIDGKEAERIGLVTFCTPRSEVLPRSLAIAANLARGSQAAIRATKK SLNNWMRQAGPIFDNSLAMEMLCFLGPDVKEGLAALRAKRTPDFPSARLPG" misc_feature complement(1630269..1631063) /locus_tag="Alide2_1536" /note="enoyl-CoA hydratase; Provisional; Region: PRK07327" /db_xref="CDD:180931" misc_feature complement(1630449..1631039) /locus_tag="Alide2_1536" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(1630635..1630637,1630644..1630649, 1630713..1630721,1630725..1630727,1630848..1630862, 1630872..1630874,1630971..1630973,1630977..1630979)) /locus_tag="Alide2_1536" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(1630713..1630715,1630854..1630856)) /locus_tag="Alide2_1536" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(1630449..1630454,1630461..1630463, 1630506..1630508,1630515..1630517,1630548..1630550, 1630557..1630562,1630566..1630571,1630575..1630580, 1630593..1630598,1630602..1630610,1630614..1630616, 1630632..1630643,1630677..1630688,1630749..1630751, 1630773..1630775)) /locus_tag="Alide2_1536" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(1631170..1631655) /locus_tag="Alide2_1537" /db_xref="GeneID:10482573" CDS complement(1631170..1631655) /locus_tag="Alide2_1537" /inference="protein motif:PFAM:PF05977" /note="PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: aav:Aave_4649 protein of unknown function DUF894, DitE" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387449.1" /db_xref="GI:330824146" /db_xref="InterPro:IPR010290" /db_xref="GeneID:10482573" /translation="MTLSCPFFLTVKNMPLGTRADSPGALLRHPSFPRLWGVWLMANV CMWMSDVAAVWPMTSLTDSKLMVAMIQTCTTLPVFLLALPGSAITDIVDRRSGFLAAQ CWTALAAAIVFNGMAVNASLVLVLLLAGVIIAWLGGAWVFALTATGIAPCVLLGRRYR I" misc_feature complement(<1631371..1631592) /locus_tag="Alide2_1537" /note="Bacterial protein of unknown function (DUF894); Region: DUF894; pfam05977" /db_xref="CDD:147889" gene complement(1631697..1632752) /locus_tag="Alide2_1538" /db_xref="GeneID:10482574" CDS complement(1631697..1632752) /locus_tag="Alide2_1538" /inference="protein motif:PFAM:PF00267" /note="PFAM: Porin, Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin" /codon_start=1 /transl_table=11 /product="porin" /protein_id="YP_004387450.1" /db_xref="GI:330824147" /db_xref="GO:0005215" /db_xref="InterPro:IPR001702" /db_xref="GeneID:10482574" /translation="MKKTIALAAGLAGMALSPAFAQSSVTLYGLMDAGLVHIDNVGGA SSNQVRSGSALTSRFGLRGSEDLGGGLSAIFNLESGIWADTGAIQGDFFQRQSWIGLR SASFGEVTAGRLLPSISDVLIGSTQAPYLGNPTATIDGAATAGASARFNNMLGTRVSN AIKYASPSFSGFKVHALTAFGEVAGSNSAGRVLSLGGSYVSDSIEAGLVYHETQCKDA GGCAPGKAKDKILGLGGSYKLNGARYGAVYTRQENALNVQGNDADVFTMYARVPLSPQ WIVMGGLQFQNDKSVQNYDVRQVNLGANYVLSKRTWLYALYSHQTVKNGGKAGMYSAT SDSDKQNQFSTGVVHTF" sig_peptide complement(1632687..1632752) /locus_tag="Alide2_1538" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.956 at residue 22" misc_feature complement(1631700..1632686) /locus_tag="Alide2_1538" /note="Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface...; Region: gram_neg_porins; cd00342" /db_xref="CDD:30071" misc_feature complement(order(1631700..1631702,1631706..1631708, 1631712..1631714,1631820..1631822,1631829..1631834, 1632273..1632278,1632282..1632284,1632414..1632422, 1632450..1632464,1632468..1632473,1632501..1632512, 1632516..1632518,1632522..1632530,1632534..1632536, 1632552..1632566,1632648..1632656,1632660..1632662, 1632678..1632680,1632684..1632686)) /locus_tag="Alide2_1538" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:30071" misc_feature complement(order(1632282..1632284,1632375..1632377, 1632468..1632470,1632579..1632581,1632663..1632665)) /locus_tag="Alide2_1538" /note="eyelet of channel; other site" /db_xref="CDD:30071" gene complement(1632817..1633785) /locus_tag="Alide2_1539" /db_xref="GeneID:10482575" CDS complement(1632817..1633785) /locus_tag="Alide2_1539" /inference="similar to AA sequence:KEGG:Reut_B3884" /note="KEGG: reu:Reut_B3884 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387451.1" /db_xref="GI:330824148" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482575" /translation="MTSKRRFLAACTLVAFGTLPAQADTYPSRPIRIIVHSSPGALLD VTTRVVAQEMSKDLGQPIVIENRPGADGLLGIRAVKAAPADGYTLLAAANTVAQLPAF RKEPGYDLEKDFTGIGMMNRAPFLFVGPPGQPSKTLAELIANAKAQPGQLVMAHAGKG TSVHMAAALFFHQTGTKFLDVPYKGAAAALPDVVGGRANVMFDGANSSGPLVKEGKLR AFGITSTTRSPVFPDIPTLAEQGLPNYSFYVYLGLLAPANVPKDVVPRLAKALRTALA SEPVKKRFRNDAAEAGRMSPEEFTKFLKEDAARTEKVATDLGYAKE" sig_peptide complement(1633714..1633785) /locus_tag="Alide2_1539" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 24" misc_feature complement(1632823..1633776) /locus_tag="Alide2_1539" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1632832..1633644) /locus_tag="Alide2_1539" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1634384..1635247 /locus_tag="Alide2_1540" /db_xref="GeneID:10482576" CDS 1634384..1635247 /locus_tag="Alide2_1540" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: dac:Daci_0260 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387452.1" /db_xref="GI:330824149" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10482576" /translation="MEMLMQQVLNGLTLGGIYGLVALGLTLVYGILHVPNFAHGAFYM VGAFVAFHAMNAWGWGYWVAMLAAAAVVAALAVVSERLVFHPLRKASGIHPMIAAIGV LLFLEAGAQALWGADFQRMPTPYTSIVEMGGITAPAQRLLIIAAAFALMVALHLFLTR TTTGSTIIAMAQNREGASLVGIDANRVSMLTFAISGMLAAVAATLYAPINLVYPAMGN LVITKAFVIIILGGMGSVPGAIVGGLIIGFAESFGAFYISTDYKDIVAFVLLVVILSL RPQGLFAKRGH" misc_feature 1634414..1635229 /locus_tag="Alide2_1540" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 1634906..1634962 /locus_tag="Alide2_1540" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 1635248..1636222 /locus_tag="Alide2_1541" /db_xref="GeneID:10482577" CDS 1635248..1636222 /locus_tag="Alide2_1541" /inference="protein motif:PFAM:PF02653" /note="PFAM: ABC transporter permease; KEGG: dac:Daci_0261 inner-membrane translocator" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387453.1" /db_xref="GI:330824150" /db_xref="GO:0005215" /db_xref="InterPro:IPR001851" /db_xref="GeneID:10482577" /translation="MSGFIDSRAGWGLLLAASLAFPWVAGNDYHLTVMSTAYIFAIAT LGLNLITGYTGQLNLAHAGFMAAGAYTVGILTVDHGWPFWGSLVMSGVVCMVLGYLIG VVSLRLKGHYFSIFTLCVGYIMFLVIEKWEGLTHGTVGIMGIPAPEAIGALSFESPLA LYYLVLAFLVLSVWAMQRIVKSLLGRTFIAIRNSDELAEALGINLMRNKVLAFMLSVV YAGVAGGLYAGFVRFIGPDMAGVHHTFDMMIFAMAGGLGTVLGPLLGSIGMPWLTQYL QFLQEYRFIVFGPILVMLVIFMPYGVVGSVTAWRARRNARKGQQHAQD" misc_feature 1635356..1636159 /locus_tag="Alide2_1541" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature 1635833..1635889 /locus_tag="Alide2_1541" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene 1636209..1636973 /locus_tag="Alide2_1542" /db_xref="GeneID:10482578" CDS 1636209..1636973 /locus_tag="Alide2_1542" /EC_number="3.6.3.25" /inference="protein motif:PRIAM:3.6.3.25" /note="PFAM: ABC transporter-like; KEGG: dac:Daci_0262 ABC transporter-like protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="sulfate-transporting ATPase" /protein_id="YP_004387454.1" /db_xref="GI:330824151" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482578" /translation="MLKIDHLTKRFGGLAAVNDVSTVIEEGRINAIIGPNGAGKTTFF NLISCVHKPTSGTITFDGRDVTSLRTDQVARLGVARTFQTTTLFDRSTVLDNLIVGHR LRTHSGLWDVLRGSSRLREEERVCREKAREALDFVGLSRVAHRLAGDITQEERKRVAF ALALSTDPRLMLLDEPAGGVNPEETEGLAELIRKIVRHGITVALIEHKMNMIMSLADK ILVLSYGEKIAEGTPEEIRRNPAVIDAYLGSEHAEV" misc_feature 1636209..1636955 /locus_tag="Alide2_1542" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 1636212..1636934 /locus_tag="Alide2_1542" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature 1636308..1636331 /locus_tag="Alide2_1542" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature order(1636317..1636322,1636326..1636334,1636455..1636457, 1636728..1636733,1636827..1636829) /locus_tag="Alide2_1542" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature 1636446..1636457 /locus_tag="Alide2_1542" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature 1636656..1636685 /locus_tag="Alide2_1542" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature 1636716..1636733 /locus_tag="Alide2_1542" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature 1636740..1636751 /locus_tag="Alide2_1542" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature 1636815..1636835 /locus_tag="Alide2_1542" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene 1636960..1637667 /locus_tag="Alide2_1543" /db_xref="GeneID:10482579" CDS 1636960..1637667 /locus_tag="Alide2_1543" /EC_number="3.6.3.17" /inference="protein motif:PRIAM:3.6.3.17" /note="PFAM: ABC transporter-like; KEGG: dac:Daci_0263 ABC transporter-like protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="monosaccharide-transporting ATPase" /protein_id="YP_004387455.1" /db_xref="GI:330824152" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482579" /translation="MLKFDDVSLKYGSFLALDRVSLHAGKGELVVLLGANGAGKSSLF LTASGIHRAAGGSITWEGRELVGSKPSAIVQAGVVQCPEGRKLFPQMSVRKNLELGAY VHRRDPGPSRQTLEEVLELFPILREKQHDPAGSLSGGQQQMVAIGRAMMGRPRVLLLD EPSLGLAPLVIKQMFEVIQRINQAGTTVLLAEQNAYAALRIAHRAYVLESGRIVREGL PGELLADDSIRRAYIGA" misc_feature 1636960..1637661 /locus_tag="Alide2_1543" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature 1636963..1637634 /locus_tag="Alide2_1543" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature 1637059..1637082 /locus_tag="Alide2_1543" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature order(1637068..1637073,1637077..1637085,1637206..1637208, 1637437..1637442,1637536..1637538) /locus_tag="Alide2_1543" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature 1637197..1637208 /locus_tag="Alide2_1543" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature 1637365..1637394 /locus_tag="Alide2_1543" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature 1637425..1637442 /locus_tag="Alide2_1543" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature 1637449..1637460 /locus_tag="Alide2_1543" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature 1637524..1637544 /locus_tag="Alide2_1543" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene 1637712..1638878 /locus_tag="Alide2_1544" /db_xref="GeneID:10482580" CDS 1637712..1638878 /locus_tag="Alide2_1544" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0264 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004387456.1" /db_xref="GI:330824153" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR006311" /db_xref="GeneID:10482580" /translation="MRAFPRFTRRQMTALAVAAAALAAGPALAQEVIKIGYSGPLSGG AAQYGKNVLDGMQMAVAEINAGNPEVGGKKVRFEVVPLDDKYNPSETAINAQRLVQQH KAAAILVPHSGGIFALQTSNERNNFIVLAYSSVPQITERGNKLTLRIPPEFTSYIAPF SRYVMGRYGKKVAMIGADHDYGKAWAAAFKPGWEKLGGTVVAENPMSYNRATDFYSGV SKALAEKPDVLFVGGASEPTALVVKQARELGFKGGFVVMDQAKLDEMARVVGGYGLLE GAIGVMPVSEDTKPENKAFIERFGKMYPGRIPGSEALWNYTAVHATFRAMQLAGSASD TKAIHAKLDAAYKALPPEVNPGGVQGVDQRGGTVTTERGAAVRNGKVEPIQTGQ" sig_peptide 1637712..1637801 /locus_tag="Alide2_1544" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 30" misc_feature 1637811..1638818 /locus_tag="Alide2_1544" /note="Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_ligand_binding_like_3; cd06336" /db_xref="CDD:107331" misc_feature order(1638039..1638047,1638105..1638113,1638252..1638254, 1638411..1638413,1638483..1638485) /locus_tag="Alide2_1544" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107331" gene complement(1639019..1640719) /locus_tag="Alide2_1545" /db_xref="GeneID:10482581" CDS complement(1639019..1640719) /locus_tag="Alide2_1545" /EC_number="6.2.1.3" /inference="protein motif:PRIAM:6.2.1.3" /note="KEGG: tin:Tint_1587 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="Long-chain-fatty-acid--CoA ligase" /protein_id="YP_004387457.1" /db_xref="GI:330824154" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10482581" /translation="MSDRHFAHWPHLLPRHLTVPATHLYRNIEVSAMRYPDKAALVFY DSVLSYARLQDETERLAAHLQQACGVRKGDRVLLYMQNSPQFVIGYYAILRADAVVVP VNPMNLTEELRHYVDDAGARTILAAQDLFAQVRPLLREGRAAADDDAQAPGLRHSVVA AYGDYLTAPTDLPVPAFVAAPRESVDEPGAVAWCDALAAGLHPAPLAAGPDDLAVMPY TSGTTGHPKGCMHTHRSVMYNAVAGTQWLNTQQDAVTLVVLPLFHVTAMQGGMNGSLY AGATIVLLPRWDRDAAAQLIGRYRVTGTQMIVTMVVDLLSNPRLGEYDFSSIRRLSGG GAAMPEAVATRLQELCRLDYLEGYGMSETMAATHINPPQRPMKQCLGIPIFDVDARVV DPATLAELPPGEVGEIIVHGPQVMQGYWGQPEATAAAFVTLNGKRFLRTGDLARADEH GYFYMVDRLKRMINASGFKVWPAEVEALMYAHPAIQEVCVIAARDARRGETVKAVVVL REAFRGKVTEQEIADWAHGHMAAYKSPRLVQFVDALPKSGTGKVQWRALQDSEATSAP " misc_feature complement(1639022..1640683) /locus_tag="Alide2_1545" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK08314" /db_xref="CDD:181379" misc_feature complement(1639061..1640575) /locus_tag="Alide2_1545" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(1640729..1641955) /locus_tag="Alide2_1546" /db_xref="GeneID:10482582" CDS complement(1640729..1641955) /locus_tag="Alide2_1546" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10" /note="KEGG: tin:Tint_1589 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase" /protein_id="YP_004387458.1" /db_xref="GI:330824155" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482582" /translation="MDFSYSPKVVDLQKRLTAFMDEHVYPAESAYHHEVDANRKAGNP WQPTKVMEELKAKARAAGLWNLFLPESKYGAGLTNLEYAPLCEIMGRSHVAPEAFNCS APDTGNMETLVRYGSEEQQRQWLLPLLEGRIRSAFAMTEPAVASSDATNIEARIERVG DEYVINGRKWWTSGAPDPRCEILIFMGKTDPDHPSRHRQQSMILVPMKTPGVTMERAL PVFGYDHAPHGHGEVSFDNVRVPVSNVLLGEGRGFEIAQGRLGPGRIHHCMRLIGVAE RALELMCRRALGRVAFHRPVADQGVTRERIANARILIDQARFLVLNAAYMMDTVGNKV AQKEIAMIKVAAPGMACQVIDWAMQVHGGGGVCDDFPLAAAYAQARTLRFADGPDEVH RNQIGKMELSRYMTAR" misc_feature complement(1640744..1641955) /locus_tag="Alide2_1546" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(1640750..1641937) /locus_tag="Alide2_1546" /note="Acyl-CoA dehydrogenases similar to fadE2; Region: ACAD_FadE2; cd01155" /db_xref="CDD:173844" misc_feature complement(order(1641401..1641403,1641407..1641409, 1641506..1641511,1641530..1641532,1641536..1641538)) /locus_tag="Alide2_1546" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:173844" misc_feature complement(order(1640798..1640803,1641164..1641166, 1641173..1641178,1641197..1641199,1641437..1641439)) /locus_tag="Alide2_1546" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173844" misc_feature complement(1640798..1640800) /locus_tag="Alide2_1546" /note="catalytic base [active]" /db_xref="CDD:173844" gene complement(1641978..1642751) /locus_tag="Alide2_1547" /db_xref="GeneID:10482583" CDS complement(1641978..1642751) /locus_tag="Alide2_1547" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="KEGG: dac:Daci_0266 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004387459.1" /db_xref="GI:330824156" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10482583" /translation="MSVKQLFDLTGQVALITGGSRGLGLQMAEALGEMGARLAITARK ADELAQAKAHLEGLGYEVETVVNDLSKFDQIPAMVDQVLARFGTIDILVNNAGATWGE KAEDYPDAAWHKVMDLNVNAPFFLSREVGKRVMIPKGRGNIIVTASVAALKGTPPGMN TIAYNTSKAAALHFARTLASEWGTYGIRVNALCPGFFPSKLASGLIDKLGPTLVQRTP LRRIGGDEDLKGAVVFLASEASRHITGQGLVIDGGASLI" misc_feature complement(1641981..1642751) /locus_tag="Alide2_1547" /note="gluconate 5-dehydrogenase; Provisional; Region: PRK08213" /db_xref="CDD:181295" misc_feature complement(1641993..1642733) /locus_tag="Alide2_1547" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(1642161..1642172,1642248..1642250, 1642260..1642262,1642308..1642316,1642461..1642469, 1642620..1642628,1642683..1642685,1642689..1642694, 1642698..1642700)) /locus_tag="Alide2_1547" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(1642248..1642250,1642260..1642262, 1642308..1642310,1642395..1642397)) /locus_tag="Alide2_1547" /note="active site" /db_xref="CDD:187535" gene complement(1643004..1643801) /locus_tag="Alide2_1548" /db_xref="GeneID:10482584" CDS complement(1643004..1643801) /locus_tag="Alide2_1548" /inference="protein motif:PFAM:PF09339" /note="KEGG: reh:H16_A2948 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004387460.1" /db_xref="GI:330824157" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10482584" /translation="MPAPRNAPRPPKEDRHFVTALARGLEVLACFRSGDKVLGNQEIA QRCRLPKSTVSRLTYTLTRLGYLIHVEDAGKYRLGTATLSLGSAMLVRLDVRQIARPL MQELADFAKAEVSLGTRDRFSMIYVENCRSSALLTLSLDVGSRIALATSAMGRAWLAA VPEEVRSPALEQMRARGDKMAWGEVQAGIDKALQDYRSLGVTCSFGEWQRNVNAIARA FHPGGGLPPMVINCGGPSFNLPPEFLLAEVRPRLIEMVVRIEAALCR" misc_feature complement(1643478..1643750) /locus_tag="Alide2_1548" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1643013..1643747) /locus_tag="Alide2_1548" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" gene 1643883..1644155 /locus_tag="Alide2_1549" /db_xref="GeneID:10482585" CDS 1643883..1644155 /locus_tag="Alide2_1549" /inference="protein motif:PFAM:PF00816" /note="PFAM: Histone-like nucleoid-structuring protein H-NS; KEGG: ctt:CtCNB1_0646 histone-like nucleoid-structuring protein H-NS" /codon_start=1 /transl_table=11 /product="histone family protein nucleoid-structuring protein H-NS" /protein_id="YP_004387461.1" /db_xref="GI:330824158" /db_xref="GO:0003677" /db_xref="InterPro:IPR001801" /db_xref="GeneID:10482585" /translation="MSTYQALLEQKKALDQRIAEARKTEARQALATVHALIAEFGFTA QQVFPWKPAARKVPARYRDPVTGATWSGRGKPPRWINGKDRAAFEI" misc_feature 1643895..1644128 /locus_tag="Alide2_1549" /note="H-NS histone family; Region: Histone_HNS; pfam00816" /db_xref="CDD:189728" misc_feature 1644033..1644152 /locus_tag="Alide2_1549" /note="Domain in histone-like proteins of HNS family; Region: HNS; cl09251" /db_xref="CDD:186852" gene complement(1644171..1645400) /locus_tag="Alide2_1550" /db_xref="GeneID:10482586" CDS complement(1644171..1645400) /locus_tag="Alide2_1550" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: azo:azo3693 hypothetical protein" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004387462.1" /db_xref="GI:330824159" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10482586" /translation="MTHGKPLPSSPAMQPPGDSSIGATLVVCLGLSQLVAWGTMHYLI AVFGRPIGQEMGWSAAFVQGGFSLALVVMGGASALAGRWIDAQGGRAAMMTGCWIGAA GCALLATTTGAAQYLAGWALLGLGMRLALYDAAFAALAHLGGAASKRAMSQITLFGGL ASTVFWPLGQALAQALGWRGALGVYALFLLLASGLHLAIPAARVAAHAPRHAAPAGGP GAAPARADTLLYGLVAVLAMVMQTGISAHFIELLRGLGWSASVAVTLSALLGIGQFTG RVWVVAWGHRYNAIRLNLLPSALLAGGYAVSLVVGTTLYGAAAFAFLYGAGNGIATIT RGAMPLLLFDTASYGRIVGAVLKPAFVLSAAAPVALAFALDGWGHAGTLWLMLATSLV LLAASAALARRHAPRRG" gene 1645555..1645630 /locus_tag="Alide2_R0023" /note="tRNA-Gly3" /db_xref="GeneID:10482587" tRNA 1645555..1645630 /locus_tag="Alide2_R0023" /product="tRNA-Gly" /db_xref="GeneID:10482587" gene complement(1646379..1647326) /locus_tag="Alide2_1551" /db_xref="GeneID:10482588" CDS complement(1646379..1647326) /locus_tag="Alide2_1551" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: pol:Bpro_0754 integrase catalytic subunit" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004387463.1" /db_xref="GI:330824160" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10482588" /translation="MNIHKNASMTPRGREHLVREIDRIGLKPAAAAAGLSAHTARKWQ RRWASQGAPGLLDRSSRPERSPRRSDALKLERAVALRRNQRLTYACIAERVGLSISVV ARACKAAAVARLPALQDTVPVRRYERQSAGELLHLDTKKLGRFDKPGHRVTGDRTQNT PRAGWQALHVAIDDHSRVGFSQMLADETAKCAFAFLLAALRYYKSLGVNVERVMTDNG SAYKSRRFTKLLRRLGIKHIRTRPYTPRTNGKAERFIQTLLREWAYAFVYPSSEHRAR ELQPWMYHYNFHRPHSATSHRPPITRLGFEGNNVLRNYI" misc_feature complement(1646541..1646891) /locus_tag="Alide2_1551" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1647481..1649358) /locus_tag="Alide2_1552" /db_xref="GeneID:10482589" CDS complement(1647481..1649358) /locus_tag="Alide2_1552" /inference="similar to AA sequence:KEGG:Bxe_A1801" /note="manually curated; KEGG: bxe:Bxe_A1801 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387464.1" /db_xref="GI:330824161" /db_xref="GeneID:10482589" /translation="MTSRIGSPDTQADLDVRACLDRMPPRSFVMVAGAGSGKTTSLIK AMAHLAETRGPALRRAGQQIACITYTEVAVGEISADVGASPLFHISTIHSFLWSVIRP FHSDIAAWVAIRIDEKIAERRAHYDKPRTQAKTKARLEQEIADLEADLAAISEVEKFV YGTGSSYAEGILGHDDILKLTPACVAAHPLLRQLVAKRFPYIFVDESQDTNPEVVEAL RHIAGEHPGLCVGFFGDPMQKIYMSGVGTVPLNDGWAEITKPENFRCPTSVLGVINAI RAPGDGLEQVRGRTITVDGIEQPVAGTSNLFILPADAERSARLAAIRQWLAAETGDGL WLSDVREGDVRLLVLVHRMAANRLGFPNLYAALNDRAPMSLSEGLSDGTAWPLRPLVQ HILPLVVAAQAGDRFTVISTLRSECPRLEPARLRGQATAPVLTALQQALDGLVGLLAA GSQATIRDVLTHVRDNELLRLDDRFAMHLVAEPVDDGSSGFENVQAYLACGVDELWAY RRYFTEESPFATHHGVKGAQFERVLVVIDDEEAGFRQYSYGKYLGYVPLSDKDEANLA AGEESVLDRTRRLFYVCCSRATKDLAVVAFVPDVAAARTAIVAQNLFPEAVIRGAEHL G" misc_feature complement(<1648495..1649268) /locus_tag="Alide2_1552" /note="UvrD/REP helicase; Region: UvrD-helicase; cl14126" /db_xref="CDD:196784" gene 1651396..1651719 /locus_tag="Alide2_1554" /db_xref="GeneID:10482590" CDS 1651396..1651719 /locus_tag="Alide2_1554" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004387465.1" /db_xref="GI:330824162" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10482590" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADAQRIKELEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature 1651396..1651605 /locus_tag="Alide2_1554" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1651716..1652631 /locus_tag="Alide2_1555" /pseudo /db_xref="GeneID:10482591" gene complement(1653251..1654213) /locus_tag="Alide2_1556" /db_xref="GeneID:10482592" CDS complement(1653251..1654213) /locus_tag="Alide2_1556" /inference="protein motif:PFAM:PF01609" /note="PFAM: Transposase, IS4-like; KEGG: bmj:BMULJ_05861 ISBmu20 transposase" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_004387466.1" /db_xref="GI:330824163" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002559" /db_xref="GeneID:10482592" /translation="MKQTSLGLGQSSKRTRRRVFLEEMDRVVPWSELVTLISPFMPEG RRGRPPFAVEVMLRIHFMQQWFNLSDPAMEEALHDMALFRDFAGLGGWDERVPDETTI LRFRRVLEKHKLAPKILQTINDLLRSKGLMLRAGTVVDATLIAAPSSTKNAEGERDPE MKQSKKGNQWYFGMKAHIGVDAESGLVHTVRGTAGSAGDVTEANALLHGEETEGFGDA GYQGVDKRPDARLGVRWNIAMRPGKRRALDKSRESNRLIDELEKLKASIRAKVEHPFR VIKRQFGHVKVRYRGLAKNTAQLHTLFALSNLWMVRRQLGGVQG" misc_feature complement(1653845..1654075) /locus_tag="Alide2_1556" /note="Transposase domain (DUF772); Region: DUF772; cl12084" /db_xref="CDD:196330" misc_feature complement(1653269..1654039) /locus_tag="Alide2_1556" /note="Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]; Region: COG3039" /db_xref="CDD:32853" gene complement(1654411..1655379) /locus_tag="Alide2_1557" /db_xref="GeneID:10482593" CDS complement(1654411..1655379) /locus_tag="Alide2_1557" /inference="protein motif:PFAM:PF01609" /note="PFAM: Transposase, IS4-like; KEGG: axy:AXYL_01136 transposase, IS4 family protein 1" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_004387467.1" /db_xref="GI:330824164" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002559" /db_xref="GeneID:10482593" /translation="MQLSFGDAEGMGKRKRTRREVFLDEMERVVPWSALLKLIEPHYP KLGRPGRQPYALATMLRIHFLQQWYALSDPAMEEALYDTAVMRRFARLSGLDAIPDET TILNFRRLLETHDLARQLFERVNAHLARRGQSLRAGTIVDATIIAAPSSTKNAEGTRD PEMHQTKKGNQWHFGMKAHIGVDEDSGLVHHVDCTAANVADVTRLHALLHGKEDVIWG DSGYTGAEHRPELEDVDAAFRIAEKPSKVKAIGNARERMYVKRWEQFKASVRAKVEHP FRVVKRQFGYMKVRYRGLAKNAGQLYVLFALSNLWMVRRQLAAAVG" misc_feature complement(1655005..1655232) /locus_tag="Alide2_1557" /note="Transposase domain (DUF772); Region: DUF772; cl12084" /db_xref="CDD:196330" misc_feature complement(1654423..1655196) /locus_tag="Alide2_1557" /note="Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]; Region: COG3039" /db_xref="CDD:32853" gene 1655450..1655549 /locus_tag="Alide2_1558" /pseudo /db_xref="GeneID:10482594" gene 1655594..1655929 /locus_tag="Alide2_1559" /db_xref="GeneID:10482595" CDS 1655594..1655929 /locus_tag="Alide2_1559" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387468.1" /db_xref="GI:330824165" /db_xref="GeneID:10482595" /translation="MHFTAMSRNLERMRAALTEWMIKEEILGDAFFVDIEAWRARNEP YGNDSLLVLVFDSSTLHTMLNYGGDTMEFDDLVESFGFWYELGHSWNMGFYPIEGGEF NIEVQCGWG" gene complement(1655898..1656842) /locus_tag="Alide2_1560" /db_xref="GeneID:10482596" CDS complement(1655898..1656842) /locus_tag="Alide2_1560" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: xop:PXO_02075 IS1112 transposase" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004387469.1" /db_xref="GI:330824166" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10482596" /translation="MNYRHLTLEQRYQIAALHGAGESRKSIAEKIGRHPSTVGRELSR NRCGKAYTASHAHGLATQRRTLASSRSPLAPGVVAELTARLKQEHSPEQIAGRLGLLK AGKVSHTTVYRYARELGLHSHLRQPKRRRGYGQRRTGRFADRKPIQARPPEVAERSRI GDWEGDSVRPARGTGAVITLVERRSGFVRLTWSPDGTADAVSQAIECRMDRLADYIHT ITFDRGSEFAEDRRLEKSLKAAIYFADPHSPWQRGCNENLNGLLRQYFPRSRDFSTIT MEELQAAEDRLNDRPRKRLGYLTPSEVFFNPNHIALQC" misc_feature complement(1655931..1656842) /locus_tag="Alide2_1560" /note="Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]; Region: Tra8; COG2826" /db_xref="CDD:32654" misc_feature complement(1656045..1656362) /locus_tag="Alide2_1560" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 1656957..1657175 /locus_tag="Alide2_1561" /pseudo /db_xref="GeneID:10482597" gene complement(1657385..1657603) /locus_tag="Alide2_1562" /db_xref="GeneID:10482598" CDS complement(1657385..1657603) /locus_tag="Alide2_1562" /inference="protein motif:PFAM:PF10038" /note="PFAM: Protein of unknown function DUF2274; KEGG: pap:PSPA7_3696 conjugal transfer protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387470.1" /db_xref="GI:330824167" /db_xref="InterPro:IPR018733" /db_xref="GeneID:10482598" /translation="MSTTRKLRLGPLPKTESVKLTFVCSGSLKADLDRYAALHAQTYG ETVDAMTLIPHMLEAFMAGDRGFRRHAR" misc_feature complement(1657388..1657588) /locus_tag="Alide2_1562" /note="Protein of unknown function (DUF2274); Region: DUF2274; cl02406" /db_xref="CDD:154894" gene complement(1657600..1658886) /locus_tag="Alide2_1563" /db_xref="GeneID:10482599" CDS complement(1657600..1658886) /locus_tag="Alide2_1563" /inference="protein motif:PFAM:PF03743" /note="PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: pap:PSPA7_3697 conjugation TrbI family protein" /codon_start=1 /transl_table=11 /product="conjugation TrbI family protein" /protein_id="YP_004387471.1" /db_xref="GI:330824168" /db_xref="InterPro:IPR005498" /db_xref="GeneID:10482599" /translation="MSQDNTPDLATPQAGKVAPEAVALRAQPRPVTRLNRRTLAILVG GLSVAVLGATIWSLQPQRRGTGEQTELYNVDRVSKSEGLDALPTDYSKLPPALPPDVP ELGPPLPGDLGPAIVASQQPVTPGYSPPGHDPEDALRKEADAAAASSVFFRSGAQGQA ATTVAQAAPGAPGVANTLAAFAPLAAGPASTAAQPADPTTVQNRQDQKEAFLKAGSTE TRNSGNLALPASPYQVMAGTVIAGALVTGIKSDLPGDVIATVTEPVYDTATGRHLLIP QGARILGRYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLAGTDPAGYAGLEDGVDWH WDRIFAGAALTTLLGVGAELASPGNRQNGDRVIIAGRDSLQDSVNQVGQEMTRRNLNI QPTLTERPGLPVRIIVNRDLVLRPYQPLFFNRGSSR" misc_feature complement(<1658617..1658850) /locus_tag="Alide2_1563" /note="Bacterial conjugation TrbI-like protein; Region: TrbI; cl04242" /db_xref="CDD:194809" misc_feature complement(1657645..1658193) /locus_tag="Alide2_1563" /note="Bacterial conjugation TrbI-like protein; Region: TrbI; cl04242" /db_xref="CDD:194809" gene complement(1658889..1659872) /locus_tag="Alide2_1564" /db_xref="GeneID:10482600" CDS complement(1658889..1659872) /locus_tag="Alide2_1564" /inference="protein motif:TFAM:TIGR02775" /note="KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX" /codon_start=1 /transl_table=11 /product="P-type conjugative transfer protein TrbG" /protein_id="YP_004387472.1" /db_xref="GI:330824169" /db_xref="InterPro:IPR010258" /db_xref="InterPro:IPR014142" /db_xref="GeneID:10482600" /translation="MNDLFRKSSLPAILLALAGCASQGKPPPTISLDEPVQAQPLPEP PAPVEVVAVPEVLPMPAQLKPLEDAKPAPEPADEKVRVSRANAEARVAPTREGYVNAI QVWPFTDGALYQVYAAVGRVTVVSLQPGEELVTVAAGDTVRWIVGDTSSGSGADLRVN VLVKPIRSGLKTNLVITTSRRTYLLELASTEKTWMASVSWEYPRDRMLALQRQAQAAN AAAPVDTGLALENLRFRYAISGSNPPWKPLRAFDDGEKVYIQFPAGIAQGELPPLFVI GAQGDGQLVNYRFRSPYYIVDRLFGAAELRLGGDKGDVVRIERTDGVARRN" sig_peptide complement(1659798..1659872) /locus_tag="Alide2_1564" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.916 at residue 25" misc_feature complement(1658910..1659185) /locus_tag="Alide2_1564" /note="VirB9/CagX/TrbG, a component of the type IV secretion system; Region: VirB9_CagX_TrbG; cd06911" /db_xref="CDD:132874" misc_feature complement(order(1658919..1658939,1658961..1658963, 1659120..1659137,1659153..1659173)) /locus_tag="Alide2_1564" /note="VirB7 interaction site; other site" /db_xref="CDD:132874" gene complement(1659869..1660573) /locus_tag="Alide2_1565" /db_xref="GeneID:10482601" CDS complement(1659869..1660573) /locus_tag="Alide2_1565" /inference="similar to AA sequence:KEGG:PSPA7_3699" /note="KEGG: pap:PSPA7_3699 conjugal transfer protein TrbF" /codon_start=1 /transl_table=11 /product="conjugal transfer protein TrbF" /protein_id="YP_004387473.1" /db_xref="GI:330824170" /db_xref="GeneID:10482601" /translation="MRFKKPQVRYADTPQPATPYQAAGQVWDERIGSPRVQAKNWRLM AFGCLTLALLMAGGLVWRSAQSIVTPYVVEVDNAGQVRAVGEAATPYRPNDAQTAHHI ARFVTLVRSLSIDSIVVRQNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQI TSVVRASDTSFNVRWTERRYVNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVN GLSWSRELDSSEGAKP" misc_feature complement(1659890..1660573) /locus_tag="Alide2_1565" /note="VirB8 protein; Region: VirB8; cl01500" /db_xref="CDD:194151" gene complement(1660586..1661971) /locus_tag="Alide2_1566" /db_xref="GeneID:10482602" CDS complement(1660586..1661971) /locus_tag="Alide2_1566" /inference="protein motif:TFAM:TIGR02783" /note="KEGG: tgr:Tgr7_1901 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6" /codon_start=1 /transl_table=11 /product="P-type conjugative transfer protein TrbL" /protein_id="YP_004387474.1" /db_xref="GI:330824171" /db_xref="InterPro:IPR007688" /db_xref="InterPro:IPR014150" /db_xref="GeneID:10482602" /translation="MNDVTIIDQFLNTFAAYIDSGFGLLRGEVAFLTATLIVIDMTIA GLYWAMSHATGQGEDVIAKLLRKVLYVGAFAYIINNFNWLASIVFRSFAGLGITATGS AITMENFLQPGRLAKTGLDAGGPIFLQLDDMMGFPEVFLNLDAILVLFLAWLVVVLCF FVLAIQLFITLIEFKLTTLAGFVLVPFALWNKTSFLAEKVLGNVVASGVKVLVLAVIV GIGSGLFTQFQVHPDEPSLDHALVIMLASLTLLALGIFGPGIATGLVSGAPQLGAGAM AGAAIGAAGTAVAVGAAATGVGGAVTAGARMAPAAAKLAGAGARAATSAAGSAKSAFQ AGSAAAGGGAKGAMAGLGNVAKTGAQSAGRAAASRASAAGQRMAAPFRAGWNGAAADG GAGAASGQGAAGEAASGAATAQTQEQPAWAKRLHRRQQLTHAATTTAHALRGGDGGGS GQGPSLRDSDS" misc_feature complement(<1661159..1661971) /locus_tag="Alide2_1566" /note="TrbL/VirB6 plasmid conjugal transfer protein; Region: TrbL; cl01503" /db_xref="CDD:194152" misc_feature complement(1660592..>1660720) /locus_tag="Alide2_1566" /note="conjugal transfer protein TrbL; Provisional; Region: PRK13875" /db_xref="CDD:184359" gene complement(1661968..1662288) /locus_tag="Alide2_1567" /db_xref="GeneID:10482603" CDS complement(1661968..1662288) /locus_tag="Alide2_1567" /inference="similar to AA sequence:KEGG:PSPA7_3701" /note="KEGG: pap:PSPA7_3701 putative lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387475.1" /db_xref="GI:330824172" /db_xref="GeneID:10482603" /translation="MRCVLVLCAALLAACGEQPADHLADALAADPVRLKALRAQCAAD RQATGEDACRAAAEAFRRRFFSGQAGPDEYQTLAELPPIPPSFDEPADGVAPVVPAEP EDTP" sig_peptide complement(1662238..1662288) /locus_tag="Alide2_1567" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.682) with cleavage site probability 0.382 at residue 17" gene complement(1662301..1663026) /locus_tag="Alide2_1568" /db_xref="GeneID:10482604" CDS complement(1662301..1663026) /locus_tag="Alide2_1568" /inference="protein motif:TFAM:TIGR02780" /note="TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pap:PSPA7_3702 conjugal transfer protein TrbJ" /codon_start=1 /transl_table=11 /product="P-type conjugative transfer protein TrbJ" /protein_id="YP_004387476.1" /db_xref="GI:330824173" /db_xref="InterPro:IPR014147" /db_xref="GeneID:10482604" /translation="MKKRLIAAAIAAMLCTATAHAQWVVVDPTNLVQNTLTAIRTLEQ INNQIQQLQNEAQMLMNQARNLASLPSSVVGQLRANLATTERLIAQARGLAYDVTNLD REFARLYPEQYAATVSGDQMYRDAQERWRNTLNGLQTTMQMQAQVSQNLGEDESVLAD LVGKSQSAEGALQAMQAMNQLLALQAKQSIQSQRLQITQDRAAALELARQAAATERAR EVRRRFMGDGTPYTPQRVDFYGN" sig_peptide complement(1662961..1663026) /locus_tag="Alide2_1568" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 22" misc_feature complement(1662427..1662963) /locus_tag="Alide2_1568" /note="Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]; Region: COG5314; cl02193" /db_xref="CDD:186517" gene complement(1663023..1665476) /locus_tag="Alide2_1569" /db_xref="GeneID:10482605" CDS complement(1663023..1665476) /locus_tag="Alide2_1569" /inference="protein motif:PFAM:PF03135" /note="KEGG: pap:PSPA7_3703 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="CagE, TrbE, VirB component of type IV transporter system, conserved region" /protein_id="YP_004387477.1" /db_xref="GI:330824174" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR018145" /db_xref="GeneID:10482605" /translation="MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRG PDLDSATQGELIATSARLNNALRRMGSGWALFIEAERRPAADYPHSEFPEPLSWVVEE ERRAAFEESGNHFESGYHLTLLYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAE TDRVFDLLDGVMPEIDWLDDAQTLTYLHATISTRRYRVGVPEVPFHIDALLTDSPLVG GLAPMLGDQHLRVVSVRGFPTSTWPGILDDLNRLGFAYRWSTRFLCLDKAEAERELAR LRRQWFAKRKNVIALLRETIFQQESPLVDTDANNKAADADAALQELGSDQVAFGYLTA TVTVMDADAAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSLPGNAYANVRQPIV STLNLAHMMPVSAVWAGQERNDHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPT GMGKSVLLATLAMQFRRYRGSRIFAFDMGRSMRAAILGLGGEHYDLGTDGEIAFQPLA RIDSEGYRTWAAEWIEGRLLHEGVAVGPDEKAAIWSALGSLAGAPVEQRTMTGLSVLL QSNTLRQALSPYVLGGAHGKLLDADHDRLGMADVQCFEMEELMHSKAAVMAVLHYLFA RFDERFDGAPTLLILDEAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDS SIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNRRQIEIVATAQPKRDYYYQSRL GNRLFDLDLGPAALAFAGASTPQDQRDIGRVLLDAGVPGFAGAWLRHRGLDWAADLLP SFPGLAPGSLADQPLENLS" misc_feature complement(1663062..1665476) /locus_tag="Alide2_1569" /note="conjugal transfer ATPase TrbE; Provisional; Region: PRK13873" /db_xref="CDD:184357" misc_feature complement(1664313..>1664789) /locus_tag="Alide2_1569" /note="VirB family, component of type IV transporter system; Region: CagE_TrbE_VirB; pfam03135" /db_xref="CDD:111973" misc_feature complement(<1663380..1663577) /locus_tag="Alide2_1569" /note="TraM recognition site of TraD and TraG; Region: TraG-D_C; cl14888" /db_xref="CDD:196849" gene complement(1665492..1665764) /locus_tag="Alide2_1570" /db_xref="GeneID:10482606" CDS complement(1665492..1665764) /locus_tag="Alide2_1570" /inference="similar to AA sequence:KEGG:PSPA7_3704" /note="KEGG: pap:PSPA7_3704 conjugal transfer protein" /codon_start=1 /transl_table=11 /product="conjugal transfer protein" /protein_id="YP_004387478.1" /db_xref="GI:330824175" /db_xref="GeneID:10482606" /translation="MSAPDTFADGFEVPLHRSLTEPILLGGAPRTVAIANGTLAAAVG LGLQLWIPGVVFWIVGHSLAVWGARVDPQFMAVFARHIRHRPLLDV" misc_feature complement(1665495..1665764) /locus_tag="Alide2_1570" /note="Type IV secretory pathway, VirB3-like protein; Region: VirB3; cl01501" /db_xref="CDD:186439" gene complement(1665761..1666144) /locus_tag="Alide2_1571" /db_xref="GeneID:10482607" CDS complement(1665761..1666144) /locus_tag="Alide2_1571" /inference="protein motif:PFAM:PF04956" /note="PFAM: Conjugal transfer,TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC" /codon_start=1 /transl_table=11 /product="Conjugal transfer protein TrbC" /protein_id="YP_004387479.1" /db_xref="GI:330824176" /db_xref="InterPro:IPR007039" /db_xref="GeneID:10482607" /translation="MTQMYVPAFRFSANPALRLARLRCLARPAGQGLLLAALLLFLAG TAQAAGSSMPWEGPLQSILESIQGPVARIVAVIIIIATGLALAFGDTSGGFRKLIQIV FGLSIAFAASSFFLSFFSFSGGAVV" sig_peptide complement(1665998..1666144) /locus_tag="Alide2_1571" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.992 at residue 49" misc_feature complement(<1665839..>1665994) /locus_tag="Alide2_1571" /note="TrbC/VIRB2 family; Region: TrbC; cl01583" /db_xref="CDD:194170" gene complement(1666141..1667193) /locus_tag="Alide2_1572" /db_xref="GeneID:10482608" CDS complement(1666141..1667193) /locus_tag="Alide2_1572" /inference="protein motif:TFAM:TIGR02782" /note="KEGG: pap:PSPA7_3706 P-type conjugative transfer ATPase TrbB; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E" /codon_start=1 /transl_table=11 /product="P-type conjugative transfer ATPase TrbB" /protein_id="YP_004387480.1" /db_xref="GI:330824177" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR014149" /db_xref="GeneID:10482608" /translation="MSAVPQSMSATSLDRRIQMLRTAMGPLIAAALEDPDVVEVMLNP DRTLWVDRLSSGRAPMGVELPEADGERIIRLVAAHVGAEVHRGQPLLSAELPETGERF EGILPPAAPGPAFALRKRAIGVIPLERYVIDGMMTSAQAGFLVRAVRERQNVLIAGAT SSGKTTLANALLAEIAATGDRVLVLEDTVELQCTARDHVPLRTRAGVVSMTELVRSSM RLRPDRVVVGEVRGAEALDLIKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNP PRALIAEAVNVVIHIAGRGRKRRIESIARVVGFDGVGYQLADALETPFPELPPLPDAA PAAATSPSPHSLGELP" misc_feature complement(1666252..1667139) /locus_tag="Alide2_1572" /note="P-type conjugative transfer ATPase TrbB; Region: TrbB_P; TIGR02782" /db_xref="CDD:163017" misc_feature complement(1666288..1666815) /locus_tag="Alide2_1572" /note="Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial...; Region: VirB11-like_ATPase; cd01130" /db_xref="CDD:29996" misc_feature complement(order(1666309..1666311,1666696..1666713, 1666804..1666806)) /locus_tag="Alide2_1572" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29996" misc_feature complement(order(1666699..1666707,1666717..1666722)) /locus_tag="Alide2_1572" /note="Walker A motif; other site" /db_xref="CDD:29996" misc_feature complement(order(1666405..1666407,1666414..1666416, 1666426..1666434,1666462..1666467,1666474..1666476, 1666486..1666488,1666525..1666527,1666531..1666539, 1666588..1666593,1666597..1666608,1666627..1666629, 1666651..1666653,1666711..1666716)) /locus_tag="Alide2_1572" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:29996" misc_feature complement(1666507..1666524) /locus_tag="Alide2_1572" /note="Walker B motif; other site" /db_xref="CDD:29996" gene complement(1667190..1667654) /locus_tag="Alide2_1573" /db_xref="GeneID:10482609" CDS complement(1667190..1667654) /locus_tag="Alide2_1573" /inference="protein motif:PFAM:PF01402" /note="PFAM: CopG-like DNA-binding; KEGG: dac:Daci_0439 CopG/DNA-binding domain-containing protein" /codon_start=1 /transl_table=11 /product="CopG-like domain-containing protein DNA-binding protein" /protein_id="YP_004387481.1" /db_xref="GI:330824178" /db_xref="GO:0003677" /db_xref="InterPro:IPR002145" /db_xref="GeneID:10482609" /translation="MSHYRLNLFIQPEHAKRLDELAAKKGVSKSSIVAAALASWLSPD AADQREAAIAKRLDRLSRQAERMERDQNIAIETLALFIRYYLTVSTPVPEAHQDAARA QGKARFEQFTEQLGRHLLRGRSLVRDVVEELHPDPMRMEDAAAAAQAQERAS" gene complement(1667651..1669651) /locus_tag="Alide2_1574" /db_xref="GeneID:10482610" CDS complement(1667651..1669651) /locus_tag="Alide2_1574" /inference="protein motif:PFAM:PF02534" /note="PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: pau:PA14_30960 conjugal transfer coupling protein TraG" /codon_start=1 /transl_table=11 /product="TRAG family protein" /protein_id="YP_004387482.1" /db_xref="GI:330824179" /db_xref="InterPro:IPR003688" /db_xref="GeneID:10482610" /translation="MQGTNVLFGQIAVVFGIVIAGVWGATQWTAAALGYQVRLGSPWF DFLGTSIYHPWKLFEWWFFFGAYAPEVFDTGGAIAGASGMVAVVVAIAMSVWRSRQAR LVTTYGSARWANAQDIRKAGLTQPAGVFLGQHDRQYLRHEGPEHVLTFAPTRSGKGVG LVVPTLLSWPASAVIHDIKGENWQITAGWRSRFSHCLLFNPTDAKSAAYNPLLEVRRG AHEVRDVQNIADILVDPEGALEKRNHWEKTSHALLVGAILHVLYAGEDKTLRGVANFL SDPASPFELTLHRMMTTPHLGDGPHPVVASAAREVLNKSDNERSGVLSTAMSFLGLYR DPTVAEVTSRCDWRIADLIAAEHPVSLYLVVPPSDISRTKPLIRLILNQIGRRLTESL DGSDGIKRRHKLLLMLDEFPALGRLDFFETALAFMAGYGIRSFLIAQSLNQIDKAYGQ NHSILDNCHVRVTFATNDERTAKRISETLGTATELRAQRNYAGHRLAPWLGHLMVSRQ ETARPLLTPGEVMQLPPDEAVVMVGSRAPIKAKKLRYYADANFKRRVLPPPALADGQY ADAPPLRPDDWSGLAIPAVPIAPAAASADGLGSADDGGPRRQPELSETVAYDPELAAP VADLGLLDDDDDLPLPLPRQLDPAMQRTARLASLDPNDGIEL" misc_feature complement(1667654..1669651) /locus_tag="Alide2_1574" /note="conjugal transfer coupling protein TraG; Provisional; Region: PRK13876" /db_xref="CDD:184360" misc_feature complement(1668083..1669216) /locus_tag="Alide2_1574" /note="The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA...; Region: TraG_VirD4; cd01126" /db_xref="CDD:29992" misc_feature complement(1669178..1669201) /locus_tag="Alide2_1574" /note="Walker A motif; other site" /db_xref="CDD:29992" misc_feature complement(order(1668422..1668427,1669118..1669123, 1669127..1669129,1669178..1669195)) /locus_tag="Alide2_1574" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29992" misc_feature complement(1668425..1668439) /locus_tag="Alide2_1574" /note="Walker B motif; other site" /db_xref="CDD:29992" gene complement(1669887..1670165) /locus_tag="Alide2_1575" /db_xref="GeneID:10482611" CDS complement(1669887..1670165) /locus_tag="Alide2_1575" /inference="similar to AA sequence:KEGG:PSPA7_3722" /note="KEGG: pap:PSPA7_3722 putative lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387483.1" /db_xref="GI:330824180" /db_xref="GeneID:10482611" /translation="MKKIVPFLLVAALTACGQSETPQKANTSEANIPTVEELAANPER LKELRQQCKPDRPKLGDVLCNRVAEATRKRFYGDGETPYTPPKEPPKF" sig_peptide complement(1670106..1670165) /locus_tag="Alide2_1575" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.569 at residue 20" gene complement(1670162..1671106) /locus_tag="Alide2_1576" /db_xref="GeneID:10482612" CDS complement(1670162..1671106) /locus_tag="Alide2_1576" /inference="protein motif:PFAM:PF03466" /note="KEGG: bpt:Bpet2202 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387484.1" /db_xref="GI:330824181" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482612" /translation="MEIRHLRCFLAVAEELRFARAAERLHMEQSPLSRAIKELEEDLG VALFVRTTRTTRLTRAGTLFLEHVRRVFTALEQARDSVKAAANGFHGQLRVALSDGIT PSRLPAVLALCRQEEPEVEIRFFEVPLSQQIKGLHDDLYDVGFTQSDEVGDGITAIPV WSDPIMVAVPARHPLLAHKRIPLDELLRYPLVLCDPQVCEGPAKHVDRILRRVDMEPL VAERVASCDLMMALVSAGFALGLAGAARIAASHEPGVVARPLALRVPPLTTYLLHAAG EPSEELARFIERVQAVESPEPPRPKPGHHSDSLEEPAP" misc_feature complement(1670219..1671106) /locus_tag="Alide2_1576" /note="DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906" /db_xref="CDD:182137" misc_feature complement(<1670975..1671100) /locus_tag="Alide2_1576" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1670240..1670833) /locus_tag="Alide2_1576" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature complement(order(1670345..1670347,1670402..1670407, 1670411..1670416,1670432..1670437,1670492..1670497, 1670597..1670599,1670729..1670731,1670735..1670737, 1670741..1670743,1670765..1670767,1670774..1670779, 1670783..1670788,1670795..1670797,1670816..1670818)) /locus_tag="Alide2_1576" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature complement(order(1670501..1670503,1670522..1670527, 1670666..1670668,1670813..1670815)) /locus_tag="Alide2_1576" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene complement(1671209..1672462) /locus_tag="Alide2_1577" /db_xref="GeneID:10482613" CDS complement(1671209..1672462) /locus_tag="Alide2_1577" /inference="protein motif:PFAM:PF01494" /note="PFAM: Monooxygenase, FAD-binding; KEGG: ami:Amir_4339 monooxygenase FAD-binding" /codon_start=1 /transl_table=11 /product="monooxygenase FAD-binding protein" /protein_id="YP_004387485.1" /db_xref="GI:330824182" /db_xref="GO:0004497" /db_xref="InterPro:IPR002938" /db_xref="GeneID:10482613" /translation="MRKNGPELEADMSKTPAVARRTALVVGLGISGIACAIALHRAGW LPVVVERAPARRRGGYFIAVMGVGRSAAADLGVGDRLVDHRAESMTYVIDRQGNRSPG LSFADIPINPYLTMRGDVEDAVWKTLQEVAPDTEIHFSTTPTAIEQNGDCVEVTLEGP QGVSRRWFDLVIGADGIRSTVRRLAFPPALGGLQRLGTMICAYALQEDLPTLPSGVGG QIIEPGRSFTVFPFDDRRSTVLFSWYAADPDAERKGKAAEQIRKAFGPEPLGPILEAA LGQLETSEAALFDIAEQVRLSTWYQGRVVLVGDSAWCPSLYSGMGASSGLAGANVLGK RLEEHGDDIAAALADWEATMRPRIAEFQKSAGTGIGVFTPASDKAIRIRKRAMSLLTN PIVRWVFSHVGKFLPVMQQRERPIF" misc_feature complement(1671392..1672420) /locus_tag="Alide2_1577" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(1671278..1672393) /locus_tag="Alide2_1577" /note="hypothetical protein; Provisional; Region: PRK07588" /db_xref="CDD:169028" gene complement(1672473..1673990) /locus_tag="Alide2_1578" /db_xref="GeneID:10482614" CDS complement(1672473..1673990) /locus_tag="Alide2_1578" /inference="protein motif:TFAM:TIGR01845" /note="KEGG: bbr:BB2379 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="NodT family RND efflux system outer membrane lipoprotein" /protein_id="YP_004387486.1" /db_xref="GI:330824183" /db_xref="GO:0005215" /db_xref="GO:0008289" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010131" /db_xref="GeneID:10482614" /translation="MHAPRCSNRLVPRLLAGALAAALAGCAVGPDFVKPTPAAPDDWT SWRSGDASLRIPTEATQALPAQWWLAFNDATLDALQQRAFDASPDLRTAALRFAQARA QRNTVAAQRGPEINASGSATRQRQSQSGAGTRMIGIMGADPSLTELLAEPFTLYQAGF DASWELDLWGRVRRSVEAADADVGHQAALLDLARLGLTSDVARNYFELRTAQRQIRLM REDIAALEDRAALLQARVEGGVLDHTDLQRQRAELAALKAQLPPLLAQEAASANQIAL LLGERPGALRAELAPREADAGTSLPDLALGLPSEVALRRPDIRAAEARLHSATASIGI ARADLYPSIRLGATFGYESYLSGEFSDWGSRTWSVGPSLGLPIFDHGRRKATVQLREL QQQEAAINYQQTVLKAWQEIDDSLSAYSAEQRQARELQTRSDAAGDAYQLAQARYDGG VTDFTAVLDAQRSYLQARRDLAASEGRLSTRYVTVNKAIGNVPLDTENAAGKGME" misc_feature complement(1672521..1673915) /locus_tag="Alide2_1578" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature complement(1673253..1673765) /locus_tag="Alide2_1578" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature complement(1672521..1673072) /locus_tag="Alide2_1578" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene complement(1674003..1675118) /locus_tag="Alide2_1579" /db_xref="GeneID:10482615" CDS complement(1674003..1675118) /locus_tag="Alide2_1579" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: abc:ACICU_01702 ABC-type multidrug transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_004387487.1" /db_xref="GI:330824184" /db_xref="InterPro:IPR013525" /db_xref="GeneID:10482615" /translation="MHAFFATLAQIGALIRKEILALVKDPANRAMLFAPALMQALLFG YGATYDLTNVPYAVLDQSRGQASAELLARLDGTGVFHRAATLTNSSQIAGMIDGNDAL MVLSIPADFQQRLNAGQSAPLQVILDGRNSSTAGSASAYVGSIVASYNASLGGGAAGI AIERRAWFNPNLESRWNMMPGLIGALSMLQTLLIAALSVAREREQGTFDQLLVTPLTP FQILIGKAIPAILVGLLQSTIIFLVILFWFQIPMNGSVWLLYAGLLTFNIAAVGVGLS VSAVSLSMQQAMLYTFLLIMPLMLLSGLLTPVKNMPEILQVATYANPLRFGMSIVRRV YLEGAGFLDIWRDFIPLLVMGAISLPLAAWLFRNRLS" misc_feature complement(1674111..1674620) /locus_tag="Alide2_1579" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene complement(1675124..1676266) /locus_tag="Alide2_1580" /db_xref="GeneID:10482616" CDS complement(1675124..1676266) /locus_tag="Alide2_1580" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: bpa:BPP1316 hypothetical protein" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_004387488.1" /db_xref="GI:330824185" /db_xref="InterPro:IPR013525" /db_xref="GeneID:10482616" /translation="MSTHDTQSGFLRRFTALLRKEVRQMLRDKSNLAVGLLLPVALIL LFGYGLSFDVKNAPVAVVLEDRSPTARELVDGLQGSPYIAPLFAADMAEAERLMMAGT VDGIVRVPMDFSRRLNAGDARIQLLLNGVDSSSAQTIEGYVSGAIGSWAQQQADRAGN KPAGIGNVEVVQRMWFNEAGESRWFLIPGLIVLVLTLIGGFLTSLLIAREWERGTLES LFVTPVRPMEIVLSKIAPYMVVGVIDLGLCLLAAHFLFHVPMRGSLVVIVIAGLLYLM VSLLLGLWISGVTRNQFQASQMALLASFMPAMMLSGFVFDLRNVPVVIQVISQLLPAT HFMALIKTLFMAGNNWPVIFLNCGILALYALVLMFATQRTLRKTLR" misc_feature complement(1675805..>1676107) /locus_tag="Alide2_1580" /note="YhgE/Pip N-terminal domain; Region: pip_yhgE_Nterm; TIGR03061" /db_xref="CDD:132105" misc_feature complement(1675127..1676020) /locus_tag="Alide2_1580" /note="ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842" /db_xref="CDD:31184" misc_feature complement(1675166..>1675657) /locus_tag="Alide2_1580" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene complement(1676263..1678041) /locus_tag="Alide2_1581" /db_xref="GeneID:10482617" CDS complement(1676263..1678041) /locus_tag="Alide2_1581" /EC_number="3.6.3.31" /EC_number="3.6.3.25" /inference="protein motif:PRIAM:3.6.3.25, 3.6.3.31" /note="PFAM: ABC transporter-like; KEGG: pag:PLES_25911 ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="sulfate-transporting ATPase, polyamine-transporting ATPase" /protein_id="YP_004387489.1" /db_xref="GI:330824186" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482617" /translation="MSRAEPAGASVVADSLRKTFEAPGGGPLHAVDGVSLQVRQGELT ALVGPDGAGKTTLLRMMAGLLKPDAGSLRVLGIDVAQDPQAVQDRISYMPQRFGLYED LSVQENLDLYADLHGVPQQQRRERFARLLDMTDLARFTDRPAGKLSGGMKQKLGLACT LVRSPDLLLLDEPSVGVDPLSRRELWKIVQQLVEDEQLSVIVSTAYMDEAERCAQVFV MNLGKVLAEGTPQTLAERARGLAFVAPPAAGTPARDLQARLIDASELIVDAVPSGGAV RFIRQPNADEAKIAALLDGSPPQSRTEELEDAFMMLLRQHQDGDEAASPQATTPQEAN VDAPRDDGKPVIVVRDLVRKFGDFTAVASTSFEVARGEIFGLLGPNGAGKTTTFRMLC GLLPATSGHLEVAGLNLRHARAKARARIGYVSQKFALYGNLSVRENLEFFGGAYGLRG KARDARVDAIIEQFALEPKALSGQLPGGYKQRLAMAAGLLHQPEILFLDEPTSGIDPL ARRAFWRTITALAQGGTTIIITTHFMEEAEYCDRIAIQDAGRMLALGTPIQVREQAGD AGGDMNSAFIAIVEQGRAKAAEGVAA" misc_feature complement(1677100..1678011) /locus_tag="Alide2_1581" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:31326" misc_feature complement(1677343..1678011) /locus_tag="Alide2_1581" /note="The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency...; Region: ABC_subfamily_A; cd03263" /db_xref="CDD:73022" misc_feature complement(1677877..1677900) /locus_tag="Alide2_1581" /note="Walker A/P-loop; other site" /db_xref="CDD:73022" misc_feature complement(order(1677427..1677429,1677526..1677531, 1677757..1677759,1677874..1677882,1677886..1677891)) /locus_tag="Alide2_1581" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73022" misc_feature complement(1677757..1677768) /locus_tag="Alide2_1581" /note="Q-loop/lid; other site" /db_xref="CDD:73022" misc_feature complement(1677574..1677603) /locus_tag="Alide2_1581" /note="ABC transporter signature motif; other site" /db_xref="CDD:73022" misc_feature complement(1677526..1677543) /locus_tag="Alide2_1581" /note="Walker B; other site" /db_xref="CDD:73022" misc_feature complement(1677508..1677519) /locus_tag="Alide2_1581" /note="D-loop; other site" /db_xref="CDD:73022" misc_feature complement(1677421..1677441) /locus_tag="Alide2_1581" /note="H-loop/switch region; other site" /db_xref="CDD:73022" misc_feature complement(1676281..1677009) /locus_tag="Alide2_1581" /note="ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]; Region: NatA; COG4555" /db_xref="CDD:34199" misc_feature complement(1676359..1677006) /locus_tag="Alide2_1581" /note="The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency...; Region: ABC_subfamily_A; cd03263" /db_xref="CDD:73022" misc_feature complement(1676887..1676910) /locus_tag="Alide2_1581" /note="Walker A/P-loop; other site" /db_xref="CDD:73022" misc_feature complement(order(1676446..1676448,1676542..1676547, 1676767..1676769,1676884..1676892,1676896..1676901)) /locus_tag="Alide2_1581" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73022" misc_feature complement(1676767..1676778) /locus_tag="Alide2_1581" /note="Q-loop/lid; other site" /db_xref="CDD:73022" misc_feature complement(1676590..1676619) /locus_tag="Alide2_1581" /note="ABC transporter signature motif; other site" /db_xref="CDD:73022" misc_feature complement(1676542..1676559) /locus_tag="Alide2_1581" /note="Walker B; other site" /db_xref="CDD:73022" misc_feature complement(1676524..1676535) /locus_tag="Alide2_1581" /note="D-loop; other site" /db_xref="CDD:73022" misc_feature complement(1676440..1676460) /locus_tag="Alide2_1581" /note="H-loop/switch region; other site" /db_xref="CDD:73022" gene complement(1678038..1679036) /locus_tag="Alide2_1582" /db_xref="GeneID:10482618" CDS complement(1678038..1679036) /locus_tag="Alide2_1582" /inference="protein motif:PFAM:PF00529" /note="PFAM: Secretion protein HlyD; KEGG: bbr:BB2383 HlyD family secretion protein" /codon_start=1 /transl_table=11 /product="secretion protein HlyD family protein" /protein_id="YP_004387490.1" /db_xref="GI:330824187" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10482618" /translation="MKKPLIALGLLVVLALGAWAWMHQRDKDHDGALVLYGNVDIRQV SLAFDGSGRVAELKVDEGDAVKAGQLLATLDTQTLALQAEQAQAQIGVQQQNLLRLKN GSRPEELAQARSSYAAAQADAERARKDLARLQGIAANTDNRGVSAQELDRARAAVQVA DAQAAQQRDALRLTEIGPRKEDIAAAEAQLKSSEAQLALLQHQVSQGQLIAPSDAVVR SRLLEPGDMATPQKPVYALAITRPKWVRVYVNEPDLGKVKPGQSARVTTDSAPDRPIT GKVGYISSVAEFTPKAVQTEELRTSLVYEVRVVVEDNDDALRLGQPATVVLGGDTQ" misc_feature complement(1678062..1679036) /locus_tag="Alide2_1582" /note="putative efflux pump membrane fusion protein; Provisional; Region: PRK03598" /db_xref="CDD:179602" sig_peptide complement(1678974..1679036) /locus_tag="Alide2_1582" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.891 at residue 21" gene 1679163..1679855 /locus_tag="Alide2_1583" /db_xref="GeneID:10482619" CDS 1679163..1679855 /locus_tag="Alide2_1583" /inference="protein motif:PFAM:PF09209" /note="PFAM: Transcription regulator YbiH, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ppg:PputGB1_3284 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator TetR" /protein_id="YP_004387491.1" /db_xref="GI:330824188" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="InterPro:IPR015292" /db_xref="GeneID:10482619" /translation="MNKPARGLRSDGEATRTRILEAAGELFATTGYAETSNKAIAAQA QVDLASINYHFGNRSGLYQAVLAASHGRLLDMAALRQLVGSGLSPSSKLRVLIEQLVE RATQEPQAWQLRVLAREVLSPTSHLQILFQDEAQPKMALLKHMLGEITQIPPEDPALT RCLLNVIAPCLMLLVGGRSFPGPLQEIFQMPSQTIASHLYHFAIGGLEAISREYAEQA EIRGKPGSPATK" misc_feature 1679199..1679759 /locus_tag="Alide2_1583" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 1679217..1679357 /locus_tag="Alide2_1583" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" misc_feature 1679427..1679783 /locus_tag="Alide2_1583" /note="Domain of unknown function (DUF1956); Region: DUF1956; pfam09209" /db_xref="CDD:150030" gene 1679860..1681881 /locus_tag="Alide2_1584" /db_xref="GeneID:10482620" CDS 1679860..1681881 /locus_tag="Alide2_1584" /inference="similar to AA sequence:KEGG:Smlt1841" /note="KEGG: sml:Smlt1841 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387492.1" /db_xref="GI:330824189" /db_xref="GeneID:10482620" /translation="MKSRYAKLVVLAVASLLLSGCAVLREFRPAVEVAAMTPGEYITL KRGDILTSGKLSAATLETIRVAGLDDGACAKPEAAGCIHAVSDVQGLTSEQRLSALSE LWLQQAQTLPDTEQQVAPDAGDQRLNAWLEVARHAYAYLFFSERSPDARAFEDRQTQV RDYYNLAVQEAASLVFASYRGKALASAEMMFRDGPWMVTLEPPDVVSPGRARAILPHE LLPASSLSFAGLRSTFRRDGFGAELVAVMAPDPVTTAAADSGGAGTEQPHQRPDQAWS EMPTAAITALLRFSGENLAQVLSTREVALSVHDPYRDAKIELHGQDVPLAANFTASYG LWLARSGFNRQSLRSLFGREQGIERPHLYLMQPYDPDRRIILMIHGLASSPEAWVNVA NELMGDEEIRRQFQVWQFYYPTNMPIALNHHAIRQTLDGALRHFDPQGNAAASRDMVL IGHSMGGVISRLMVSSSGGDALWNELLAGREFDDGRLERLRKRVGPLMHFEPLPQVER AIFIAAPHRGTEVAGGRLGRFAKRLVRLPLTLLEGFADVLDDLAHGEAAKAGGDKLRL PNSIDNLDRSDPFVQAAAGLSISPCVRFHSIIGHQDPEVPLTKSDDGLVPYWSAHLDG AVSEKIVHSAHSVQGTAPAIVEMRRILHEDIRDRATVPVATAAENGCRS" misc_feature 1680958..>1681458 /locus_tag="Alide2_1584" /note="Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]; Region: LipA; COG1075" /db_xref="CDD:31273" misc_feature <1681123..>1681254 /locus_tag="Alide2_1584" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(1681968..1683965) /locus_tag="Alide2_1585" /db_xref="GeneID:10482621" CDS complement(1681968..1683965) /locus_tag="Alide2_1585" /inference="similar to AA sequence:KEGG:PSPA7_3726" /note="KEGG: pap:PSPA7_3726 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387493.1" /db_xref="GI:330824190" /db_xref="GeneID:10482621" /translation="MTDRRDDDFRIRPSAPKNRGKGQGQSFVSKVLKQAGKASGGKSS VRRPASARGTGQRPGSRLGRGHTAARFAGAKLTPMSRRATIKTLLVNQRQASPQSLAK HLRYIERDGVGRDGEPGQAYGPQTDAADLDAFKERCADDRHHFRFILSPEDGAELEDL RTYTRHLMGRMEADLGTGLDWVAVNHWNTDNPHTHIVARGRDDTGKDLIIAGDYIADG FRHRAAELATEWLGPRTELEIQQTLQREVEQERWTSLDRTLQREAGEDGRVRIERFNE PRLQRQRLLLIGRLQSLQRLGLADEMQSGTWAVHADAEKTLRALGERGDIIRTMQRAM RGEPRELAVFEPGQDADGSGRTILGRVAAKGLADELRDRGYLVIDGVDGKAHYVALNA RDELANYPTGAVVEVKGSADVRAADRNIASLASNGLYRTDHHLAIAQGQPVPGRDPQE VVAAHIRRLEALRRAGIVERVAEGLWKVPGDLAERGRQYDAQRLGGVAVELKSHLPIE RQARVIGATWLDQQLIGGGSGLGDLGFGGEAKQAMQQRADFLAEQGLAERRGQRVILA RNLLRTLRNRELAQAAKDIATETGLEHRPVADGQRVAGIYRRSVMLASGRYAMLDDGM GFSLVPWRPVIEQRLGQQLAATVRGGGATWEVGRQRGQSVS" misc_feature complement(1682796..1683746) /locus_tag="Alide2_1585" /note="Relaxase/Mobilisation nuclease domain; Region: Relaxase; cl01584" /db_xref="CDD:174650" misc_feature complement(1681983..1683071) /locus_tag="Alide2_1585" /note="Protein of unknown function (DUF3363); Region: DUF3363; pfam11843" /db_xref="CDD:152279" gene complement(1683962..1684417) /locus_tag="Alide2_1586" /db_xref="GeneID:10482622" CDS complement(1683962..1684417) /locus_tag="Alide2_1586" /inference="similar to AA sequence:KEGG:Smlt1309" /note="manually curated; KEGG: sml:Smlt1309 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387494.1" /db_xref="GI:330824191" /db_xref="GeneID:10482622" /translation="MMVADSLHVAVHLVVPSGVLFCWPSPCRRACSAGAFAPHFALPP AQPSYMQASCLERARPAAVSAFAGGLAARSTAPPGRRCPERQRGAKAEGKTKGRGTGP RRKPVCTWGWRSTERLRRRAAWGARVAPMQACPRASHARTRQNLQEAQL" gene complement(1684414..1685001) /locus_tag="Alide2_1587" /db_xref="GeneID:10482623" CDS complement(1684414..1685001) /locus_tag="Alide2_1587" /inference="protein motif:PFAM:PF10502" /note="PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase" /codon_start=1 /transl_table=11 /product="peptidase S26" /protein_id="YP_004387495.1" /db_xref="GI:330824192" /db_xref="InterPro:IPR019533" /db_xref="GeneID:10482623" /translation="MTAVSNSGTAPRSRSRLRARLVLASLSACGLAALAWASFVQPLP RLIYNPSVSVAVGWYRVETLGRGTSSPPRPLSVGSIVLTTLPPDAAALAAQRGYLPSR VPLLKRVGAVAPQEVCITGRIVRIDGVPSAAVLPADRWGRPLPSWQQCRRIEPGELFL LSVTNPASFDSRYFGPVSASAVIGVAHPVWLESRP" sig_peptide complement(1684888..1685001) /locus_tag="Alide2_1587" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.500 at residue 38" misc_feature complement(1684429..1684866) /locus_tag="Alide2_1587" /note="Peptidase S26; Region: Peptidase_S26; pfam10502" /db_xref="CDD:151062" misc_feature complement(1684435..>1684833) /locus_tag="Alide2_1587" /note="The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88)...; Region: Peptidase_S24_S26; cl10465" /db_xref="CDD:186999" gene complement(1684998..1685543) /locus_tag="Alide2_1588" /db_xref="GeneID:10482624" CDS complement(1684998..1685543) /locus_tag="Alide2_1588" /inference="similar to AA sequence:KEGG:Rmet_1257" /note="KEGG: rme:Rmet_1257 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387496.1" /db_xref="GI:330824193" /db_xref="GeneID:10482624" /translation="MTASASLAPAPVAFAATAALAAPSAQPASAPLTRVALAYIEPRF NLYLRFGEPARTHQLDRWRRCAVFLPGAMFCRIRWQANDYGTIRWQLMVMQTCTPLDA AQRIPGVQPGARLLLHAEGENQVRTVLERIDAIEVLRIAPAAVSPAYWRTLANRLAAR LPLPEYTAERHAAWLAGRALP" sig_peptide complement(1685478..1685543) /locus_tag="Alide2_1588" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 at residue 22" misc_feature complement(1685004..1685444) /locus_tag="Alide2_1588" /note="Protein of unknown function (DUF2840); Region: DUF2840; pfam11000" /db_xref="CDD:192691" gene complement(1685540..1685824) /locus_tag="Alide2_1589" /db_xref="GeneID:10482625" CDS complement(1685540..1685824) /locus_tag="Alide2_1589" /inference="similar to AA sequence:KEGG:Bpet2187" /note="KEGG: bpt:Bpet2187 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387497.1" /db_xref="GI:330824194" /db_xref="GeneID:10482625" /translation="MTEKPLPNSKRTAKRVGIGARPPVNPHAEAWIRQGDADALGKGD LYTARLTLDITPAMRARIKVSAFTQGVTVADLLRGLLEREFPEHRRENTP" gene complement(1685821..1686459) /locus_tag="Alide2_1590" /db_xref="GeneID:10482626" CDS complement(1685821..1686459) /locus_tag="Alide2_1590" /inference="protein motif:PFAM:PF01656" /note="KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase; manually curated; PFAM: Cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_004387498.1" /db_xref="GI:330824195" /db_xref="InterPro:IPR002586" /db_xref="GeneID:10482626" /translation="MIVALLNQKGGVGKTTLATHIAGELAMRGQHVVLLDADPQGSSL DWTQRRSQQGLPRLFSAVGLARETLHQEAPELARRADHVIIDGPPRIAALARSALLAA ERVLIPVAASPYDLWASAEMVALIREAQVFRPALRAAFVINRRVSTTVIGREARQALA HQPLPALRAEVHQRIVFADSVATGRLARETAPDSAAAREITALVDELLRWPT" misc_feature complement(1685833..1686459) /locus_tag="Alide2_1590" /note="ParA-like protein; Provisional; Region: PHA02518" /db_xref="CDD:134018" misc_feature complement(1686031..1686456) /locus_tag="Alide2_1590" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature complement(1686415..1686435) /locus_tag="Alide2_1590" /note="P-loop; other site" /db_xref="CDD:73302" misc_feature complement(order(1686202..1686204,1686415..1686417)) /locus_tag="Alide2_1590" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene complement(1686713..1687570) /locus_tag="Alide2_1591" /db_xref="GeneID:10482627" CDS complement(1686713..1687570) /locus_tag="Alide2_1591" /inference="protein motif:PFAM:PF10134" /note="PFAM: Replication initiator protein A; KEGG: dia:Dtpsy_3526 putative replication initiator and transcription repressor protein" /codon_start=1 /transl_table=11 /product="Replication initiator protein A" /protein_id="YP_004387499.1" /db_xref="GI:330824196" /db_xref="InterPro:IPR018777" /db_xref="GeneID:10482627" /translation="MSSPALPSRQRPLQEREQLDLFRALPGDMAPRDSQDLMAFPFFS LAKSRRVAPIDFRAGNVTIRVEGTAEHGIATIWDADVLIWAASQIVEARDAGFRSSRL MQATPYEILRFIGRGTSLRDYQRLKAALDRLQSTTVATSIRETTGRRLHRFSWINEWK ELADAKGTPLGLELILPDWFYAGVMDAALVLTIDPAYFRLTGGIERWLYRLVRKHGGR QPGGWQFDFRHLYRKSGSATRFSDFAYDLRVLVARQSLPGYVLGIERMPDNGMELLTF RPVPQTARE" misc_feature complement(1686788..1687477) /locus_tag="Alide2_1591" /note="Replication initiator protein A; Region: RPA; cl02339" /db_xref="CDD:154863" gene complement(1687597..1687878) /locus_tag="Alide2_1592" /db_xref="GeneID:10482628" CDS complement(1687597..1687878) /locus_tag="Alide2_1592" /inference="similar to AA sequence:KEGG:Ajs_2652" /note="KEGG: ajs:Ajs_2652 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387500.1" /db_xref="GI:330824197" /db_xref="GeneID:10482628" /translation="MRPAPLRPAAAVSTAAAQPQRYLTNDEAAEYLRLSPRTLEKQRV IGGGPRFRKFGRRVMYAVADLDAWAADRSFETTSDPEYAEHHSADSRAR" gene complement(1687963..1688736) /locus_tag="Alide2_1593" /db_xref="GeneID:10482629" CDS complement(1687963..1688736) /locus_tag="Alide2_1593" /inference="protein motif:PFAM:PF10074" /note="PFAM: Protein of unknown function DUF2285; KEGG: dac:Daci_0459 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387501.1" /db_xref="GI:330824198" /db_xref="InterPro:IPR018754" /db_xref="GeneID:10482629" /translation="MADRAAESWYPTAAYLYVLHLDSLALAWEYLRRHPDYRLDWLRH RRRSQAAQDAAHRWGLRLLEDPALDARDAHPAWQPGHAAVVQLYPDADPPVDAESFAF WRIPGHKQLLHDGKGLALTARSPGHCLRFALAPGLEDGMAVAYAHRGGAAAPARGHVF GAALADARRRPTPAALLELHTLQALDATLAGASLRDVAEGLFGADAVAADWHADGDLR ARVRRLVRRGDALMRGGYRRLAQLSPLEKGRFDGDAKRP" misc_feature complement(1688014..1688352) /locus_tag="Alide2_1593" /note="Uncharacterized conserved protein (DUF2285); Region: DUF2285; cl02246" /db_xref="CDD:154817" gene complement(1689046..1689549) /locus_tag="Alide2_1594" /db_xref="GeneID:10482630" CDS complement(1689046..1689549) /locus_tag="Alide2_1594" /inference="similar to AA sequence:KEGG:Rmet_1250" /note="manually curated; KEGG: rme:Rmet_1250 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387502.1" /db_xref="GI:330824199" /db_xref="GeneID:10482630" /translation="MCLYGNPHRRVPAKPRKRIRACARRRKSGLAVLRLGVKPHPCII GFVGLPTMPQPLATVPERAQLLANGEARAAGRAIDPVPVVRLFTPDAHVTWLLAALDP ADGDTAWGLIDLGIGMPAQGTVKLSELAGIVGPHQQPVMRDLYFRPTRTLSEYTRLAE RDGAIPD" misc_feature complement(1689049..1689384) /locus_tag="Alide2_1594" /note="Protein of unknown function (DUF2958); Region: DUF2958; pfam11171" /db_xref="CDD:151613" gene 1689637..1689942 /locus_tag="Alide2_1595" /db_xref="GeneID:10482631" CDS 1689637..1689942 /locus_tag="Alide2_1595" /inference="protein motif:PFAM:PF01381" /note="KEGG: rme:Rmet_1249 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004387503.1" /db_xref="GI:330824200" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10482631" /translation="MAAGNSLAKALKTVRKARGLSQEAFSDVSSRTYMSTLERDLKSP TLNKLAELCEVMEIHPLTLLTLAYAGNSPHKADELLAQVRQELEAVLKERDAAKPRA" misc_feature 1689658..1689810 /locus_tag="Alide2_1595" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene complement(1690006..1690359) /locus_tag="Alide2_1596" /db_xref="GeneID:10482632" CDS complement(1690006..1690359) /locus_tag="Alide2_1596" /inference="protein motif:PFAM:PF05284" /note="KEGG: ajs:Ajs_2644 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF736" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387504.1" /db_xref="GI:330824201" /db_xref="InterPro:IPR007948" /db_xref="GeneID:10482632" /translation="MGANLVQPKGENIMANIGTFTADKDGFTGTLRTLTLNVKAKLVP NDKGSSENAPDFRLQAAGHDIGAAWKKTSEAGRDYLSVTLDDPSFPAPVYARLIEGED GTHDLIWSRSKPQAA" misc_feature complement(1690012..1690320) /locus_tag="Alide2_1596" /note="Protein of unknown function (DUF736); Region: DUF736; cl02303" /db_xref="CDD:154848" gene 1691106..1691435 /locus_tag="Alide2_1597" /db_xref="GeneID:10482633" CDS 1691106..1691435 /locus_tag="Alide2_1597" /inference="protein motif:SMART:SM00418" /note="SMART: HTH transcriptional regulator, ArsR; KEGG: bpt:Bpet1026 ArsR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein ArsR" /protein_id="YP_004387505.1" /db_xref="GI:330824202" /db_xref="GO:0003700" /db_xref="InterPro:IPR001845" /db_xref="GeneID:10482633" /translation="MNETQAISALGALAHTQRLRVFRALVVAGPEGLTPSVLADQLDV ARNSLSFHLKELAHAGLVTIEQQGRNLIYRADFTKMNGLLGYLTEHCCQGGACEVTES SSACTSC" misc_feature 1691139..1691333 /locus_tag="Alide2_1597" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature order(1691139..1691141,1691151..1691159,1691205..1691213, 1691238..1691249,1691253..1691258,1691265..1691270, 1691274..1691279,1691295..1691303,1691316..1691324) /locus_tag="Alide2_1597" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature order(1691205..1691207,1691214..1691216) /locus_tag="Alide2_1597" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene 1691449..1691919 /locus_tag="Alide2_1598" /db_xref="GeneID:10482634" CDS 1691449..1691919 /locus_tag="Alide2_1598" /inference="protein motif:PFAM:PF00903" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_0488 glyoxalase/bleomycin resistance protein/dioxygenase" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004387506.1" /db_xref="GI:330824203" /db_xref="InterPro:IPR004360" /db_xref="GeneID:10482634" /translation="MKRFHVHLHVDDLNRSIGFYSQLFAAQPARVEGDYAKWMLEDPP VNFAISTRGNKPGIDHLGIQTDDAEELAVLKARAEAADMTLLDEGTTTCCYARSEKHW ITDPQGVAWEHFHTLGNIPVFNEAAPAATSAAACCTPVRGKPVGVAVKPASSCC" misc_feature 1691452..1691805 /locus_tag="Alide2_1598" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_20; cd07254" /db_xref="CDD:176677" misc_feature order(1691461..1691463,1691626..1691628,1691782..1691784) /locus_tag="Alide2_1598" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176677" gene 1691932..1692429 /locus_tag="Alide2_1599" /db_xref="GeneID:10482635" CDS 1691932..1692429 /locus_tag="Alide2_1599" /inference="protein motif:PFAM:PF01451" /note="KEGG: bpt:Bpet1024 hypothetical protein; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight" /codon_start=1 /transl_table=11 /product="protein tyrosine phosphatase" /protein_id="YP_004387507.1" /db_xref="GI:330824204" /db_xref="GO:0004725" /db_xref="InterPro:IPR017867" /db_xref="GeneID:10482635" /translation="MTTDKTYNALFICTGNSARSILAEGILNELGQGRFRAYSAGSHP KGEVHPLALATLERLHMPTAGYRSKNWDEFAAPGAPELDFIFTVCDNAAGEVCPVWPG RPMSAHWGVPDPAAVEGTDEQKRKAFTDAALTLRRRIELFLSLPMQRLDAMSLQHELR SIGTK" misc_feature 1691950..1692360 /locus_tag="Alide2_1599" /note="Low molecular weight phosphatase family; Region: LMWPc; cd00115" /db_xref="CDD:29014" misc_feature order(1691968..1691970,1691974..1691979,1691983..1691991) /locus_tag="Alide2_1599" /note="Active site [active]" /db_xref="CDD:29014" gene 1692440..1693525 /locus_tag="Alide2_1600" /db_xref="GeneID:10482636" CDS 1692440..1693525 /locus_tag="Alide2_1600" /inference="protein motif:TFAM:TIGR00832" /note="KEGG: dac:Daci_0490 arsenical-resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter" /codon_start=1 /transl_table=11 /product="arsenical-resistance protein" /protein_id="YP_004387508.1" /db_xref="GI:330824205" /db_xref="InterPro:IPR002657" /db_xref="InterPro:IPR004706" /db_xref="GeneID:10482636" /translation="MSVGTQTASRVPAAPTMSVFERYLSVWVLLCIVAGIALGQFAPS VFHAIGRMEIAQVNLPVGLLIWVMIIPMLLKVDFGALGQVKQHWRGIGVTLFVNWAVK PFSMALLAWIFIRQVFAQWLPSDQLDSYVAGLILLAAAPCTAMVFVWSRLTGGDPVFT LSQVALNDTIMVFAFAPIVGLLLGLSSITVPWDTLLVSVGLYIVIPVILAQLWRRALL SKGQAAFDRALERIGPLSIAALLLTLVLLFAFQGEAIIRQPLVIAMLAVPILIQVFFN SGLAYWLNRRLGEQHNIACPSALIGASNFFELAVAAAISLFGFQSGAALATVVGVLIE VPVMLLVVRVVNRSRGWYECGPNSATR" misc_feature 1692488..1693441 /locus_tag="Alide2_1600" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene 1693543..1693965 /locus_tag="Alide2_1601" /db_xref="GeneID:10482637" CDS 1693543..1693965 /locus_tag="Alide2_1601" /EC_number="1.20.4.1" /inference="protein motif:TFAM:TIGR00014" /note="TIGRFAM: Arsenate reductase; KEGG: rpf:Rpic12D_0647 arsenate reductase; PFAM: Arsenate reductase-like" /codon_start=1 /transl_table=11 /product="arsenate reductase" /protein_id="YP_004387509.1" /db_xref="GI:330824206" /db_xref="GO:0008794" /db_xref="InterPro:IPR006659" /db_xref="InterPro:IPR006660" /db_xref="GeneID:10482637" /translation="MSTVTIYHNPDCGTSRNVLALIRNSGEEPTVIEYLKTPPDRATL MVLIAAMGVSARAVLREKGTPYAELGLGDPQWGDDRLIDFMLQHPILINRPIVVTPLG TRLCRPSEAVLDILPQPQRGAFRKEDGEAVVDAEGRRV" misc_feature 1693552..1693887 /locus_tag="Alide2_1601" /note="Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the...; Region: ArsC_ArsC; cd03034" /db_xref="CDD:48583" misc_feature order(1693576..1693578,1693720..1693722,1693822..1693824, 1693861..1693863) /locus_tag="Alide2_1601" /note="catalytic residues [active]" /db_xref="CDD:48583" gene 1694064..1694366 /locus_tag="Alide2_1602" /db_xref="GeneID:10482638" CDS 1694064..1694366 /locus_tag="Alide2_1602" /inference="protein motif:PFAM:PF03551" /note="PFAM: Transcription regulator PadR N-terminal-like; KEGG: oan:Oant_4665 PadR-like family transcriptional regulator" /codon_start=1 /transl_table=11 /product="PadR-like family transcriptional regulator" /protein_id="YP_004387510.1" /db_xref="GI:330824207" /db_xref="InterPro:IPR005149" /db_xref="GeneID:10482638" /translation="MEHHDLLSGLIRLHVLHHAAEQEIYGQWMIDELAHHGYRLSPGT LYPMLHKMERDGYLVSRQEREGRTVRKLYTITPKGKEGLALAKDRIREFTGEAMHK" misc_feature 1694091..1694315 /locus_tag="Alide2_1602" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 1694363..1695592 /locus_tag="Alide2_1603" /db_xref="GeneID:10482639" CDS 1694363..1695592 /locus_tag="Alide2_1603" /inference="protein motif:TFAM:TIGR00937" /note="KEGG: bav:BAV1573 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter" /codon_start=1 /transl_table=11 /product="chromate transporter" /protein_id="YP_004387511.1" /db_xref="GI:330824208" /db_xref="InterPro:IPR003370" /db_xref="InterPro:IPR014047" /db_xref="GeneID:10482639" /translation="MTDSTNTLQHEAAAARGSPVEVFGAFLKLGLTSFGGPIAHLGYF RSEFVERRRWLDDRSYSDLVALCQFLPGPASSQVGMALGLGRAGWLGLLAAWAGFTLP SAIALILFAFGIAEYQGLAQSGWVHGLKVVAVAIVAQAVWGMAKSLCPDRPRAALAIL AALLTMVLPSAAGQLAAIAVAGLLGWWTLKIAQPGGGHAHSYPVSRKLGIVALLLFAA PLVGLPLWAAATDSSTIALLEGVYRSGALVFGGGHVVLPLLQASVVPSGVVSNADFLA GYGAAQAVPGPLFTFSAYLGAVAHGPLHGWIGGLALLGTIFLPAFFMLVGALPFWEGL RHRAGIQTAMAGINAGVVGILVSALYDPVWTSAIHSKADFGLALLSFGLLTVGRVPPA LVVLLAGLVGWVMAMGV" misc_feature 1694414..1694821 /locus_tag="Alide2_1603" /note="Chromate transporter; Region: Chromate_transp; pfam02417" /db_xref="CDD:190304" misc_feature 1694438..1695526 /locus_tag="Alide2_1603" /note="chromate transporter, chromate ion transporter (CHR) family; Region: 2A51; TIGR00937" /db_xref="CDD:162120" misc_feature 1695065..1695514 /locus_tag="Alide2_1603" /note="Chromate transporter; Region: Chromate_transp; pfam02417" /db_xref="CDD:190304" gene 1695598..1696128 /locus_tag="Alide2_1604" /db_xref="GeneID:10482640" CDS 1695598..1696128 /locus_tag="Alide2_1604" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rme:Rmet_1246 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-like N-acetyltransferase" /protein_id="YP_004387512.1" /db_xref="GI:330824209" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10482640" /translation="MWHTLTIQLRHETADDIAAIEAVTTAAFADAPHTSHTEQFIVRA LRAANELTLSIVAEEHGRVVGHVALSPVTITHEHRRKTEGWYGLGPISVLPPRQGRGI GSRLMEQALSELRAMQAAGCVLLGDPTYYTRFGFQAHAGLQLPGVPPGYFMALALHGT VPEGIAHYSDAFNAAA" misc_feature 1695757..1695969 /locus_tag="Alide2_1604" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature order(1695868..1695876,1695904..1695909) /locus_tag="Alide2_1604" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(1696336..1698387) /locus_tag="Alide2_1605" /db_xref="GeneID:10482641" CDS complement(1696336..1698387) /locus_tag="Alide2_1605" /inference="protein motif:PFAM:PF02195" /note="KEGG: rme:Rmet_1245 ParB family protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease" /codon_start=1 /transl_table=11 /product="ParB domain-containing protein nuclease" /protein_id="YP_004387513.1" /db_xref="GI:330824210" /db_xref="GO:0003677" /db_xref="InterPro:IPR003115" /db_xref="GeneID:10482641" /translation="MNAVLKTEAVAIEAASPLEVADPAKNLILVPLSQLLPRRSKRNV RTTPRQSIPELAASIARIGLLQNLIVILSADGEAYEVVAGDRRLTALKLLAKKMRIPT DYEVPCLLVADASARTVSLAENVQRENMHPADQFAAFAALVKEGRPIEDIAADFGVSP LVVQRRLKLANVSPRLMADYRAGGVTLEQLMALTITDDHAAQEAAFYGAPEWQRSPSK LRERLTEREIDATHALVRFVGLDAYQQAGGGIRRDLFAEGDAGTYLTDTAVLETLVRD KLATLAEDVRAEGWAWVEAVPHLAYEERQAFQNAPRHRREPTTREARRIASLETRLEK IDAELEEACDAEDEAKAEKLEQRRDQVVGELQDAEDALHGYAPDVREVAGAIVTIDRN GEAVIHRGLLREAEAKALRTLEKLRRGFGSTEGEAANDEHEDADDAPKAASLSDRLAQ WLSAHRTAALQIEVARHPHVALAALVHGMVQTVLQESHYGHDLPLGVSLKVQDRLEGM APDWPESPAAVALRELQQVAGEALPEDNAELFAALLAKPQDELVRLLAVCVASTVDVV TPRATPHQPGAELAQAVGLDMAAWWKPTAEGYFKHVSKAVILDAVGAFAPEFVTRLAK LKKADIASEAERLADGTGWMPAIFKAEGPQEAAQEEGPEQDAPEDTEAMADEPAEALA A" misc_feature complement(<1698121..1698300) /locus_tag="Alide2_1605" /note="ParB-like nuclease domain; Region: ParBc; cl02129" /db_xref="CDD:154762" misc_feature complement(<1697866..1698228) /locus_tag="Alide2_1605" /note="PRTRC system ParB family protein; Region: PRTRC_parB; TIGR03734" /db_xref="CDD:163446" gene complement(1698465..1699289) /locus_tag="Alide2_1606" /db_xref="GeneID:10482642" CDS complement(1698465..1699289) /locus_tag="Alide2_1606" /inference="protein motif:PFAM:PF06067" /note="PFAM: Protein of unknown function DUF932; KEGG: ajs:Ajs_2639 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387514.1" /db_xref="GI:330824211" /db_xref="InterPro:IPR009276" /db_xref="GeneID:10482642" /translation="MQIASRFASRSPVLRSERPLSDDQIRAVAPSIFAEAPHESRSER YSYIPTATVLQELRGEGFEPFMVTQTRVRHDDRRDYTKHMIRLRHASQINGREANEII LLNSHDGTSSYQMLAGMFRFVCSNGLVCGDTVADVRVPHKGDVAAHVIEGAYEVLHGF DRAQESRDAMRAITLDAGESEVFARAALALKYDEDKPAPITESQILMPRRHDDDRRDL WSVFNRTQENLTKGGLSARAANGRRQTTRPVQGIDQSVRLNRALWLLADGLRQLKA" misc_feature complement(1698501..1699181) /locus_tag="Alide2_1606" /note="Domain of unknown function (DUF932); Region: DUF932; cl12129" /db_xref="CDD:164334" gene 1699816..1700484 /locus_tag="Alide2_1607" /db_xref="GeneID:10482643" CDS 1699816..1700484 /locus_tag="Alide2_1607" /inference="similar to AA sequence:KEGG:Dtpsy_1275" /note="KEGG: dia:Dtpsy_1275 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387515.1" /db_xref="GI:330824212" /db_xref="GeneID:10482643" /translation="MEETIINNDDRLEHMLHRSNALHERLDELLGDADFDGSPRGESA LGMCLVAMEHATAMRALMALRLPSSAVGLMRLQFEALTRAMWLLYAASDAAIDKLLAP LTLQSEQAAKNLPGASEMIEQIGKRVGQGAPAAAHQMLSHFKDVTWHGMNSFVHGGIH PLRRSADGFPVDLALQVLRSSNGLTTMTGMTMAVLTGDEAVAKPVSKIQPAFADCLPD LLKP" gene complement(1700515..1700865) /locus_tag="Alide2_1608" /db_xref="GeneID:10482644" CDS complement(1700515..1700865) /locus_tag="Alide2_1608" /inference="similar to AA sequence:KEGG:Rmet_3038" /note="KEGG: rme:Rmet_3038 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387516.1" /db_xref="GI:330824213" /db_xref="GeneID:10482644" /translation="MNNALITDEQRIVLLANGRESLENPDFDPAPVVKLFTPDAGATW LLTEIDPDDHDHAFGLCDLGLGMPEIGWVSLQELAAVRGRLGLPVERDLHFRAEKRLS AYARDARLAGRIIE" misc_feature complement(1700518..1700853) /locus_tag="Alide2_1608" /note="Protein of unknown function (DUF2958); Region: DUF2958; pfam11171" /db_xref="CDD:151613" gene complement(1701147..1701653) /locus_tag="Alide2_1609" /db_xref="GeneID:10482645" CDS complement(1701147..1701653) /locus_tag="Alide2_1609" /inference="protein motif:TFAM:TIGR00608" /note="KEGG: tgr:Tgr7_1867 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758" /codon_start=1 /transl_table=11 /product="DNA repair protein RadC" /protein_id="YP_004387517.1" /db_xref="GI:330824214" /db_xref="InterPro:IPR001405" /db_xref="GeneID:10482645" /translation="MSQLTLTLDTPLMVRDGRGRYRLADADQILEAARQVIEQKMQRG EAFTSPEAVKDYLRAKLAGFEHEVFAVLFLDTRHRLIDYVEMFRGTIDAAEVHPREVV KQALRLNAAAVIVSHNHPSGNSEPSAADKAMTSQLRQALALVDIRTLDHVIVAGTRTT SFAERGLL" misc_feature complement(1701165..1701503) /locus_tag="Alide2_1609" /note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466; cd08071" /db_xref="CDD:163702" misc_feature complement(order(1701264..1701266,1701273..1701275, 1701297..1701299,1701303..1701305,1701453..1701455)) /locus_tag="Alide2_1609" /note="MPN+ (JAMM) motif; other site" /db_xref="CDD:163702" misc_feature complement(order(1701264..1701266,1701297..1701299, 1701303..1701305)) /locus_tag="Alide2_1609" /note="Zinc-binding site [ion binding]; other site" /db_xref="CDD:163702" gene 1702066..1703208 /locus_tag="Alide2_1610" /db_xref="GeneID:10482646" CDS 1702066..1703208 /locus_tag="Alide2_1610" /inference="similar to AA sequence:KEGG:Ajs_2635" /note="KEGG: ajs:Ajs_2635 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387518.1" /db_xref="GI:330824215" /db_xref="GeneID:10482646" /translation="MAALYQLAVLGSPTDAQISELEEIVGTAVGMFNLRLGHEVGWEV RPEAFNPDQQRSSAAVFFGGDNPPLANVAKLLERGIPLLPIASDVNRVNAEIPELLRP LNCLAYAANGSQRVATALLECAGLLPRQRRVFVSYRRGEAREAALQLFDALSARLFDV FLDTHGIPPAEDFQTMLWHRLCDSDVLVMLDTPGYFESRWTSAEFGRALAKGISVLRV GWPDCTPSARTATASRAELLPDEVDAATGRLADSAVERICLQLEEVRSQSHAVRSVNL VSNLRNAIQTIGGQLVGVGPNKAVYIRLPDGRNVVVYPTVGVPTSTTLHDASTNSPDQ SVAVVYDHVGLHPRWLGHLDWLGQHIHSARWVKASEAGWQFADWEA" gene 1703212..1703799 /locus_tag="Alide2_1611" /db_xref="GeneID:10482647" CDS 1703212..1703799 /locus_tag="Alide2_1611" /inference="similar to AA sequence:KEGG:Dtpsy_1271" /note="manually curated; KEGG: dia:Dtpsy_1271 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387519.1" /db_xref="GI:330824216" /db_xref="GeneID:10482647" /translation="MSAIFLSASVPLVGRGSYHETANPFLIQCAVRELVMAVIRQHKI VWGGHPAITPMIWSICEDLGVDYSGAVVLYQSTFFKDRYPEENDRFHNVVFTNAVAGD REASLLLMREEMLSRDDLVAAVFIGGMEGVEAEHELFRQFHPAAKVLPVPSPGGAALN LAKDQGYFADADLGDVDFAQLFHTHLALNIQGAAS" gene 1703841..1704326 /locus_tag="Alide2_1612" /db_xref="GeneID:10482648" CDS 1703841..1704326 /locus_tag="Alide2_1612" /inference="protein motif:PFAM:PF08937" /note="PFAM: MTH538 TIR-like domain; KEGG: ajs:Ajs_2632 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387520.1" /db_xref="GI:330824217" /db_xref="InterPro:IPR015032" /db_xref="GeneID:10482648" /translation="MPRKIFYSFHYQRDSWRASKIRNIGVVEGNQPASDNKWEEVKRG GEAAIKRWIDDQLQGRTCTIVLVGAETANRPWIRYEIEQSWNSGKGLLGIRVHKLLDH NQQPSVAGANPFDSFTLNDGRKLSTVVRMYDPPGATSSAAYNHISDNLSGWIEAAIAA R" misc_feature 1703847..1704185 /locus_tag="Alide2_1612" /note="TIR domain; Region: TIR; cl02060" /db_xref="CDD:197424" gene complement(1704343..1705005) /locus_tag="Alide2_1613" /db_xref="GeneID:10482649" CDS complement(1704343..1705005) /locus_tag="Alide2_1613" /inference="protein motif:PFAM:PF03167" /note="PFAM: Uracil-DNA glycosylase-like; KEGG: ajs:Ajs_2631 hypothetical protein" /codon_start=1 /transl_table=11 /product="Uracil-DNA glycosylase superfamily" /protein_id="YP_004387521.1" /db_xref="GI:330824218" /db_xref="InterPro:IPR005122" /db_xref="GeneID:10482649" /translation="MKIHPFVDAVASLQFEDCFNPYSDRCEVHDRRDAPRRRAAALSA MLRRATEEPVDAIWIGRDLGYRGGRRTGLALTDDLHISQHARRWNLDQVAERPTIGSA VAERTAAVIWGMLEHIDARIFLWNVFPLHPHESGDPFTNRQHNARERRAGEELLQQLI VLLRPSRIVAIGNDAAAAAHRITDSVPVICVRHPSYGGQTQFQRQISELYGRPMSTGS LF" misc_feature complement(1704418..1704708) /locus_tag="Alide2_1613" /note="Uracil DNA glycosylase superfamily; Region: UDG; cl00483" /db_xref="CDD:193838" gene complement(1705002..1706138) /locus_tag="Alide2_1614" /db_xref="GeneID:10482650" CDS complement(1705002..1706138) /locus_tag="Alide2_1614" /inference="similar to AA sequence:KEGG:Ajs_2630" /note="KEGG: ajs:Ajs_2630 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387522.1" /db_xref="GI:330824219" /db_xref="GeneID:10482650" /translation="MKKEGSLLLSDYAAEIAATDVLNPNDFNPVLQGLYGEVGGIMAT AKKSVRERTAYPGFKKAAEEEFGDTLWYLAAICRRLQIPLEEIFSEAANHGNFKNVGA ASDITEGALAYIAVPVAATASLDATLVRLGQSAAALLGSTPARADLIAFARAYLDAIH AAELAFSEVARGNLRKARGAFLEPQAEDLAGLDFDSEFGIEEQLPRDFKIRVNQRGSG KSYLQWKGVFIGDPLTDNIADRDGYRFHDVFHFAYAAILHWSPVMRALIKHKRKSNPK YDEEQDSGRAIVVEEGLSAWIFSRAKELNFFENQEKVSLGVLKTIGEFVSGYEVEKCP LKLWEKAILDGYAVFRQLKENQGGWIIGNREQRTIKYMPLESEK" gene complement(1706142..1706768) /locus_tag="Alide2_1615" /db_xref="GeneID:10482651" CDS complement(1706142..1706768) /locus_tag="Alide2_1615" /inference="similar to AA sequence:KEGG:Ajs_2629" /note="manually curated; KEGG: ajs:Ajs_2629 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387523.1" /db_xref="GI:330824220" /db_xref="GeneID:10482651" /translation="MARIHSYVVRYDSGFAPNPFYGYCTLATCKPNIRRSADIGDWVV GSGSNDRTVRRGGRLVYAMRVTEAMTFDEYGADPRFEYKMPYRNGSRKQSCGDNIYFR AAPGAAWQQRDSFHSRPNGTLNPDHVARDTGVNRVLISNDFVYFGGEGPEFPEELKDQ QDRPLCKTGIGLTTFDDAQLIANLEKWIRSFDVSGYQGAPFEWLTLRR" gene complement(1706768..1707235) /locus_tag="Alide2_1616" /db_xref="GeneID:10482652" CDS complement(1706768..1707235) /locus_tag="Alide2_1616" /inference="protein motif:PFAM:PF08937" /note="PFAM: MTH538 TIR-like domain; KEGG: ajs:Ajs_2628 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387524.1" /db_xref="GI:330824221" /db_xref="InterPro:IPR015032" /db_xref="GeneID:10482652" /translation="MAEKRNVFISHVHKDDHGLQKLKDLLAPKGIEVRDSSIHTGKFN NATDEHYIKTQILAPAINWAGVFICYVSPQTKNSDWVNWEIEYAAKQGKRIVGVWEHG EKECDLPEALKEYADALVGWNGDAIIDAINGKDSWEKPDGGACDPVPLKRHPC" misc_feature complement(1706882..1707223) /locus_tag="Alide2_1616" /note="TIR domain; Region: TIR; cl02060" /db_xref="CDD:197424" gene complement(1707324..1707626) /locus_tag="Alide2_1617" /db_xref="GeneID:10482653" CDS complement(1707324..1707626) /locus_tag="Alide2_1617" /inference="similar to AA sequence:KEGG:Ajs_2627" /note="KEGG: ajs:Ajs_2627 transcriptional regulator" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="YP_004387525.1" /db_xref="GI:330824222" /db_xref="GeneID:10482653" /translation="MSKIIESLRGDLAALHEAGAIGKVTMREFDAICPPPVREFSAAD IKHLRERLKFSQPVFALHLHTTASTVRKWEQGETHPTGPALKLLNVIADKGLQAII" misc_feature complement(1707330..1707626) /locus_tag="Alide2_1617" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene complement(1707610..1707993) /locus_tag="Alide2_1618" /db_xref="GeneID:10482654" CDS complement(1707610..1707993) /locus_tag="Alide2_1618" /inference="similar to AA sequence:KEGG:Ajs_2626" /note="KEGG: ajs:Ajs_2626 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387526.1" /db_xref="GI:330824223" /db_xref="GeneID:10482654" /translation="MTHVLKRKDFARWQAGEKLPDAALCKAVQEMESGLIDADLGGFL YKKRVARSGGGKSGGYRTLLSARIGSRYVFLHGFPKSDKANITQDEKKALQFAGKVFL ELSAEALSKALHSGVLLEVHCEQDH" misc_feature complement(1707631..1707984) /locus_tag="Alide2_1618" /note="Protein of unknown function (DUF1044); Region: DUF1044; cl01955" /db_xref="CDD:154675" gene complement(1708133..1709335) /locus_tag="Alide2_1619" /db_xref="GeneID:10482655" CDS complement(1708133..1709335) /locus_tag="Alide2_1619" /inference="protein motif:PFAM:PF00589" /note="PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004387527.1" /db_xref="GI:330824224" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10482655" /translation="MAKIKLTKSVVDTAQAQTCDVELRDTLVPGFLCKITPTGRKVFM VQYRTNSGVRRKPALGQFGELTVEQARSLAQDWLAEVRRGGDPGLDKAEARKAPTVKE LCGRFMDDHSKPHNKPSTQASYQYQIDNFVIPAFGSKKVHEVTRHDITALMKRMERSP TQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLITDEQMVSLFAYLD KAEAEGLEHPIYLLAVRLQFEFAARMSEILLLQWDWLDLPNGRVVWPDSKTGDMSKPL SEEARRLLTNAPRYGNSPYVCPAILDHDKPLGPHSYYQAWRRILDRAGVPKVGTHGIR HRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVASRRKSVVGTR QEPKEVTA" misc_feature complement(1708202..1709233) /locus_tag="Alide2_1619" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(1708232..1708729) /locus_tag="Alide2_1619" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature complement(order(1708238..1708240,1708343..1708351, 1708532..1708534,1708604..1708609)) /locus_tag="Alide2_1619" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature complement(order(1708238..1708240,1708265..1708267, 1708334..1708336,1708343..1708345,1708532..1708534, 1708607..1708609)) /locus_tag="Alide2_1619" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature complement(order(1708238..1708240,1708265..1708267, 1708334..1708336,1708343..1708345,1708607..1708609)) /locus_tag="Alide2_1619" /note="active site" /db_xref="CDD:29495" gene 1709584..1710213 /locus_tag="Alide2_1620" /db_xref="GeneID:10482656" CDS 1709584..1710213 /locus_tag="Alide2_1620" /inference="similar to AA sequence:KEGG:Ajs_2624" /note="KEGG: ajs:Ajs_2624 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387528.1" /db_xref="GI:330824225" /db_xref="GeneID:10482656" /translation="MSHYTAPFEIHVHGQVQLRADVDFNQIQEALKPLWKYAGARSLA DGAASAYEEEPGIQFDAKEHVLQMCWTVSGDEDFRQSLDEMCMSLNELAEQGAAIEVT FYDTEFDEEEAPEDEDARDDFVMLFVGPTPAAIMQVQRDLLVQDVINLMERHFDGSQL GGVVSEIDKLFSQRFDALVNSLEIGKPPRGLGGQGGSGHGGGRRPRHLH" gene 1710338..1712296 /locus_tag="Alide2_1621" /db_xref="GeneID:10482657" CDS 1710338..1712296 /locus_tag="Alide2_1621" /inference="protein motif:TFAM:TIGR00194" /note="TIGRFAM: Excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; KEGG: dia:Dtpsy_1185 excinuclease ABC subunit C; SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit C" /protein_id="YP_004387529.1" /db_xref="GI:330824226" /db_xref="GO:0009381" /db_xref="InterPro:IPR000305" /db_xref="InterPro:IPR001162" /db_xref="InterPro:IPR001943" /db_xref="InterPro:IPR003583" /db_xref="InterPro:IPR004791" /db_xref="GeneID:10482657" /translation="MSATHSDELLAQVAALPPLPGVYRYFDAQGVLLYVGKARNLKKR VSSYFAKQHGGTRIGHMVGKIARLETTVVRSEAEALLLENNLIKSLGPKYNILFRDDK SYPYLKITGVAEKDGEGDAPGQRYPRIAYYRGSVDKRHRYFGPYPGAWAVKETIQLLQ KVFRLRTCEDTVFANRTRPCLLYQIKRCTAPCVGLISPEGYAGDVRSAEALLRGETQE LLQELERRMLAHSERLEFELAAEVRNQITALSRVLHQQAVESVSDKDVDILAVKVAGG RACVNLAMVRGGRHLGDRAYFPVHVEDAAGVFQLEDQEEGAGAAQPDCPVEAQVLEAF MAQHYLGVPVPPTLITSLPVEQRLLEALSEQSGVRVTAVRQPREQRRAWLEMAQQNAE IQLARLLAEEGSQQARTRALAEALDLDAEDLDRFTIECFDISHTAGEATQASCVVFHH HKMQGSEYRRFKIDGITGGDDYAAMRQVLTRRYSKVAEAQREAGGAEVSDKRARLPDL VLVDGGKGQVSMAREVFTELGLDVSRIVGVEKGEGRKVGLEELVFADGREKVYLGRDS AALMLVAQIRDEAHRFAITGMRAARARARTGGSRLEDIPGVGPKKRARLLQRFGGVRG VADASVEDLATVEGISHGLAEEIYRALR" misc_feature 1710398..1712293 /locus_tag="Alide2_1621" /note="excinuclease ABC subunit C; Validated; Region: uvrC; PRK00558" /db_xref="CDD:179065" misc_feature 1710398..1710637 /locus_tag="Alide2_1621" /note="GIY-YIG catalytic domain; Region: GIY-YIG; cl01061" /db_xref="CDD:194023" misc_feature 1711619..1712089 /locus_tag="Alide2_1621" /note="UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459" /db_xref="CDD:149497" misc_feature 1712147..>1712281 /locus_tag="Alide2_1621" /note="Helix-hairpin-helix motif; Region: HHH_2; pfam12826" /db_xref="CDD:193301" gene 1712326..1712913 /locus_tag="Alide2_1622" /db_xref="GeneID:10482658" CDS 1712326..1712913 /locus_tag="Alide2_1622" /EC_number="2.7.8.5" /inference="protein motif:TFAM:TIGR00560" /note="TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: dia:Dtpsy_1186 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase" /protein_id="YP_004387530.1" /db_xref="GI:330824227" /db_xref="GO:0008444" /db_xref="InterPro:IPR000462" /db_xref="InterPro:IPR004570" /db_xref="GeneID:10482658" /translation="MTQSLLMFFTIPTVMTWTRIVAIPLIVGVFYAPMEPATRNLIAT AMFVVFAATDWLDGFLARKLNQTSAFGAFLDPVADKFLVCASLLVLVHMQRADVFVAL IIIGREIAISALREWMAQIGASKSVAVHMLGKLKTTVQMVAIPFLLYDGRLFDIIDTG VWGTWLIWLAAVLTVWSMVYYLQKALPEIRARVAK" misc_feature 1712344..1712880 /locus_tag="Alide2_1622" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene 1713258..1713530 /locus_tag="Alide2_1623" /db_xref="GeneID:10482659" CDS 1713258..1713530 /locus_tag="Alide2_1623" /inference="protein motif:PFAM:PF00216" /note="KEGG: dia:Dtpsy_1187 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein" /codon_start=1 /transl_table=11 /product="histone family protein DNA-binding protein" /protein_id="YP_004387531.1" /db_xref="GI:330824228" /db_xref="GO:0003677" /db_xref="InterPro:IPR000119" /db_xref="GeneID:10482659" /translation="MNKSELIEHIASQADISKAAATRALESTIDAVKKTLKKGGTVSL VGFGTFAVGKRAARTGRNPRTGATIKIKAAKVPKFRPGKALKDALN" misc_feature 1713261..1713521 /locus_tag="Alide2_1623" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature order(1713261..1713266,1713273..1713275,1713282..1713284, 1713294..1713296,1713336..1713338,1713345..1713350, 1713357..1713362,1713372..1713386,1713393..1713398, 1713411..1713413,1713477..1713482,1713492..1713494, 1713498..1713500,1713519..1713521) /locus_tag="Alide2_1623" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" misc_feature order(1713261..1713269,1713333..1713335,1713378..1713380, 1713384..1713386,1713390..1713395,1713402..1713404, 1713414..1713416,1713420..1713425,1713429..1713431, 1713438..1713449,1713477..1713479,1713489..1713491, 1713495..1713497,1713504..1713506) /locus_tag="Alide2_1623" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" gene 1713545..1713620 /locus_tag="Alide2_R0024" /note="tRNA-Val1" /db_xref="GeneID:10482660" tRNA 1713545..1713620 /locus_tag="Alide2_R0024" /product="tRNA-Val" /db_xref="GeneID:10482660" gene 1713680..1715602 /locus_tag="Alide2_1624" /db_xref="GeneID:10482661" CDS 1713680..1715602 /locus_tag="Alide2_1624" /inference="protein motif:PFAM:PF00639" /note="PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_1188 PpiC-type peptidyl-prolyl cis-trans isomerase" /codon_start=1 /transl_table=11 /product="PpiC-type peptidyl-prolyl cis-trans isomerase" /protein_id="YP_004387532.1" /db_xref="GI:330824229" /db_xref="GO:0016853" /db_xref="InterPro:IPR000297" /db_xref="GeneID:10482661" /translation="MLESIRKHTKWVMGLLFLLIIPSFILVGIDRNYFGGGSPVVARV DGKDITQADWDNAHRMESDRIRAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQK MHMLTSDARLARELQSIPQIAALKRPDGTLDAEAYRALAGAQGLTPEGLEARVRHDIS VSQVMGSVVASAFAGPAESKLALDALFQRREIQVARFDPSAFVSKVAVTDADLEAYYK AHLAKFQQPEQATVEYVVLDLDAVKAGITLNEDDLRTYYKENLSRLSGKEERRASHIL VNAAKDAPAAEREKAKAKAQELLAEVRKAPGRFAEIARKESQDTGSAASGGDLGFFGH GAMVKPFEDAVFSLKKGEISDVVETDFGYHVIMLTDVKTPRQPSFEELRPSLEAELRQ QQAQRKFAEVAETFANTVYEQPDSLQPVADKLKLKIHTATGVTRTSAPGEKGALANPR LLEALFQPDSVQSKRNTEAIEIGNSTLAAARITAYQPAMTLPLDKAREQVRSLYVADK SAEFARQEGQVRLAAWKASPDGAAGLSAPVTVSRDRPQNQPRAVVDAALRAPTDKLPV WTGVDLAGQGYAVLKVNRIVPRDAADEATARMEREQYLQLWVSAEAQAYYELLKQRFK VQIKAPRPAAQGETQS" misc_feature 1713779..1715536 /locus_tag="Alide2_1624" /note="periplasmic folding chaperone; Provisional; Region: PRK10788" /db_xref="CDD:182731" misc_feature <1714583..1714789 /locus_tag="Alide2_1624" /note="PPIC-type PPIASE domain; Region: Rotamase; cl08278" /db_xref="CDD:195679" gene complement(1715960..1717180) /locus_tag="Alide2_1625" /db_xref="GeneID:10482662" CDS complement(1715960..1717180) /locus_tag="Alide2_1625" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_4450 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004387533.1" /db_xref="GI:330824230" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10482662" /translation="MKRKMICAALAAVGMLSLSTVQAQISDNVIRIGVMNDMSGPFSE IAGPGSVVAAKMAVEDFLRASKSGLKVEVVSANHQNKPDVGAVTARKWFDTDGVDMIV DVPVSSVALAVNQVAREKGKAYINTGAGSPDLTGKDCSPTTVHWLFDTWMLAHSTGRA VVKSGGDTWFFLTADYAFGHALERDTANVVKASGGKVIGSVKAPMNTPDFSSFLLQAQ ASKAKVIGLANAGGDTINAVKQAAEFGIVKGGQRLAGLLIFLPDVHSLGLQRAQGLNI AESFYWDLNDGTRAWTARFAPLNGGKYPSADHAAVYSSVLHYLKSVEAAKTDDGAKVV AKMKELPTDDPLFGKGKVREDGRKTHPVHLFEVKKPSESTGPYDYYKKLVSIPAEEAF RPMAEGGCPLVAKK" sig_peptide complement(1717109..1717180) /locus_tag="Alide2_1625" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.992 at residue 24" misc_feature complement(1716038..1717123) /locus_tag="Alide2_1625" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(1716086..1717090) /locus_tag="Alide2_1625" /note="Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family; Region: PBP1_SBP_like_1; cd06327" /db_xref="CDD:107322" misc_feature complement(order(1716410..1716412,1716491..1716493, 1716647..1716649,1716791..1716799,1716860..1716868)) /locus_tag="Alide2_1625" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107322" gene complement(1717307..1718092) /locus_tag="Alide2_1626" /db_xref="GeneID:10482663" CDS complement(1717307..1718092) /locus_tag="Alide2_1626" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: mlo:mll1009 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387534.1" /db_xref="GI:330824231" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482663" /translation="MQDSIEITRPAPGVGLLTISRPEKHNAIDPATDQKMAQAFAELD ADAGVRCIVVTGAGNRAFCAGADIPELLPHIKHNMAAQRDDPQFCGITHRIATSKPVL AAINGVALGGGLEIALACDMRIASSSASFGLPEIKVGVLAGGGGCTRLPRTIPVALAA EMILTGEPIGATRALEAGLISQITEPDALIPRALEIAAAVASRAPKSVRACTALLRRA RYDELQDALADERRAFADVLLSHDADEGIRAFAEKRAPRYEDH" misc_feature complement(1717310..1718092) /locus_tag="Alide2_1626" /note="enoyl-CoA hydratase; Provisional; Region: PRK06688" /db_xref="CDD:180658" misc_feature complement(1717493..1718056) /locus_tag="Alide2_1626" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(1717679..1717681,1717688..1717693, 1717757..1717765,1717769..1717771,1717889..1717903, 1717913..1717915,1718012..1718014,1718018..1718020)) /locus_tag="Alide2_1626" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(1717757..1717759,1717895..1717897)) /locus_tag="Alide2_1626" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(1717493..1717498,1717505..1717507, 1717550..1717552,1717559..1717561,1717592..1717594, 1717601..1717606,1717610..1717615,1717619..1717624, 1717637..1717642,1717646..1717654,1717658..1717660, 1717676..1717687,1717721..1717732,1717793..1717795, 1717814..1717816)) /locus_tag="Alide2_1626" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1718192..1719553 /locus_tag="Alide2_1627" /db_xref="GeneID:10482664" CDS 1718192..1719553 /locus_tag="Alide2_1627" /EC_number="6.2.1.30" /inference="protein motif:PRIAM:6.2.1.30" /note="KEGG: rxy:Rxyl_1851 phenylacetate-CoA ligase" /codon_start=1 /transl_table=11 /product="Phenylacetate--CoA ligase" /protein_id="YP_004387535.1" /db_xref="GI:330824232" /db_xref="GeneID:10482664" /translation="MSANPETISFSAIETQPWDVLQRGQEVLLRQQLKYLVDHSDFYQ AKMQAAGVDLASVLTLADLARVPFTYKQELRESLAAAPLLGLHRAAPMFEIVQIQASS GTTGSPAYVGLTRSDRAAWSEVTARGLFACGVRSHDLVLHAFSMSKGFVGGIPIYQGV TQIGAIDIPIGADGGADRLLIAARDARPRCIVGTPNFLLYLAGIAKDVVGLTASELGV ERLIVGGEPGGGNPAIRAALEEAWGATCCELMGGTDLGCVYWAESDDQKGMYFVAPDH ILVELVDPESLAPLSWTEGATGELVYTSLQRQASPVLRFRSGDHVTVTAMGGPGGRTT PAIRCFGRTDDMLIVRGVNIFPSAVQDIVSAMAPLVGGAVRVLADFEGHTTQGNLKLV VERAPGQGAEADAQTARQVEMRVRNALSVKAEVHMVRHGFFAAPGAQKVALTLRQMPD ING" misc_feature 1718222..1719484 /locus_tag="Alide2_1627" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 1719573..1721153 /locus_tag="Alide2_1628" /db_xref="GeneID:10482665" CDS 1719573..1721153 /locus_tag="Alide2_1628" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4" /note="KEGG: pol:Bpro_5271 carboxyl transferase; PFAM: Carboxyl transferase" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase" /protein_id="YP_004387536.1" /db_xref="GI:330824233" /db_xref="InterPro:IPR000022" /db_xref="GeneID:10482665" /translation="METKDSDVNAQAYRLLIEDLAEARQRAWLGGSESARKKHHERNR LLVRERIDLLLDEGSPFVELAELAGEGMYDGVAPGAGIVTGVGLIQQRACMVIANDPT VKGGTYFGMTCRKHVRAQQFALQHRLPCITLVDSGGAFLPDQANIFPDDGLFGSIFRN QVEMSAQGIAQIAVVLGACTAGGAYIPSLCDEIVIVRGKGFMFLGGPQLVQAATGEVI DAERLGGAEMHSRVSGVTDHIAENDGQAMAIARRLVGELPPMPPPLRDRIPAQGPARP ATDIYELVSANPKKPTPTREVLRCLLDGGELTEFKAEFGPTLITGFARIGGWQVGVLA NDGVLFTESAVKATHFIDLCCKRNIPLLFLADVAGFMVGVEAEQGGIAKAGARFITAM SSAKVPKFTVITGGSYGAGNLAMCGRAFRPNAMFMWPNGRAAIMGPEQAATTLAMVKR QNLQAKGLDWSAEEEEAFKAPIRQQYESFAAARNFARHLWVDGILDPVETRDTLTLLL DLAARVPAESTQFGVFRM" misc_feature 1719597..1721150 /locus_tag="Alide2_1628" /note="3-methylcrotonyl-CoA carboxylase, beta chain; Region: PLN02820" /db_xref="CDD:178415" misc_feature <1719699..>1720124 /locus_tag="Alide2_1628" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" misc_feature 1720422..>1720907 /locus_tag="Alide2_1628" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 1721162..1723168 /locus_tag="Alide2_1629" /db_xref="GeneID:10482666" CDS 1721162..1723168 /locus_tag="Alide2_1629" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4" /note="PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: pol:Bpro_5270 carbamoyl-phosphate synthase L chain, ATP-binding; SMART: Biotin carboxylase, C-terminal" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase" /protein_id="YP_004387537.1" /db_xref="GI:330824234" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="GeneID:10482666" /translation="MFSKVLIANRGEIACRIARTLRRMGVAVATVHSTADANALHVQE IGESVWIGDGPARQSYLDIDAVLKAAQAVGADAIHPGFGFLSENPLLARRCAEFGITF IGPTPETLELFGDKSAAKLAAQRLGIPTAGGLANATEDAERVLSAISDLPLPCVVKAV AGGGGKGMRVIRSIEAAREAVEAAIREGRSSFGDGRVIVERYLNKPRHVEVQILGDGA GNVVHLYDRECSLQRRHQKVIEEAPVCSISDELRGQLWAHSVALGEAARYLGLGTVEF AVTQDAAVFLEVNPRLQVEHPVTESVLGLDLVELQVRTVADRRLAVQQAQVPAPCGHA VQARLYAEDAAQGFLPSTGRIEAFSVGLGVRADNGVIAGCEISPHYDPMIAKLIAYDS TRERALKRLREALQQTTVLGVTSNRAFLISLLGMPQVAANTVDTETIDEWLAAHAKSR ECVGHVAALMTVWRHAVHRASAASGAWGDAALTGWRMRRDPAGKAGMLSITPRYDVST PSGRWQVGFGATRPDGLWPVRIDDELFDVRVGQPLADGSWLVTLGRRTMRMSARCQAG RAWADFEEAQLALDIKPLHAAQGGGGADHSGVAVAPMMGLMVAIHVEAGQKVAAGDRL ATLESMKMEMPVVAAIDGVVRWVGCSVGGKVERNQELFRIADEA" misc_feature 1721162..1723159 /locus_tag="Alide2_1629" /note="Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]; Region: COG4770" /db_xref="CDD:34383" misc_feature 1721165..1721488 /locus_tag="Alide2_1629" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature 1721504..1722100 /locus_tag="Alide2_1629" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 1722167..1722481 /locus_tag="Alide2_1629" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" misc_feature 1722959..1723153 /locus_tag="Alide2_1629" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature order(1723022..1723024,1723049..1723057,1723076..1723078) /locus_tag="Alide2_1629" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature 1723052..1723054 /locus_tag="Alide2_1629" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene 1723184..1724143 /locus_tag="Alide2_1630" /db_xref="GeneID:10482667" CDS 1723184..1724143 /locus_tag="Alide2_1630" /EC_number="4.1.3.4" /inference="protein motif:PRIAM:4.1.3.4" /note="KEGG: pol:Bpro_5269 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase" /codon_start=1 /transl_table=11 /product="hydroxymethylglutaryl-CoA lyase" /protein_id="YP_004387538.1" /db_xref="GI:330824235" /db_xref="InterPro:IPR000891" /db_xref="GeneID:10482667" /translation="MSLPMRIEIHEEGPREGFQIEKPGFSIADRAGLVEALAQAGLPQ IQVASFVNPVKVPQMADAPELFRAIRKQPGVRYTGLWLNEKGFERAVAVPEVDLEGVL YFYTSDAFCRLNNGVSAQAQAQDQRRWVERYAARGVPVRKAYVLTAFGCNFEGAIPQE RLKEVLADMASLQDEHRIRLDEVYLADTVGWANPRSVSERVELARRFFPHARIGLHLH DTRGTGMANALAGLQAGVDLFDASVAGLGGCPFSGHAHGGAAGNICTEDLVFMCNEMG LETGIDLECLIEAARLAERIIGRRLDGRVMHSGSLKAFPTRSR" misc_feature 1723208..1724068 /locus_tag="Alide2_1630" /note="3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; Region: DRE_TIM_HMGL; cd07938" /db_xref="CDD:163676" misc_feature order(1723226..1723231,1723238..1723240,1723328..1723330, 1723334..1723336,1723490..1723492,1723829..1723831, 1723835..1723837,1723967..1723969) /locus_tag="Alide2_1630" /note="active site" /db_xref="CDD:163676" misc_feature order(1723226..1723231,1723319..1723321) /locus_tag="Alide2_1630" /note="catalytic residues [active]" /db_xref="CDD:163676" misc_feature order(1723229..1723231,1723829..1723831,1723835..1723837, 1723967..1723969) /locus_tag="Alide2_1630" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163676" gene 1724194..1725723 /locus_tag="Alide2_1631" /db_xref="GeneID:10482668" CDS 1724194..1725723 /locus_tag="Alide2_1631" /EC_number="6.2.1.26" /inference="protein motif:PRIAM:6.2.1.26" /note="KEGG: rlt:Rleg2_6334 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="YP_004387539.1" /db_xref="GI:330824236" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10482668" /translation="MNATAAASQLCLTDLFLKRVQMHPDKPALSHADRTLSYRELEAR VQRWAAFLQACGLLRGQRMAVWSENRPEYLELQLAAARLGVMIACLNWRLQGAEQLHC LRLVEPAVVIVSARYREQLGTLEHGVARVIDLDSPDASEESTRALEDRDFLRPEVHPE DGFLILYTSGTTGLPKGAVISQRASIARAMAYACEYRIGAEDGFIAWSPFFHMAATDH SLATLMLGGHVIVQDGFSASEICKTLERERIGWLMAMPGVIEPLINALKSASPVLAPR MGMVGAMADLVPCQQIAELTSLVGAPYLNSFGSTETGLAPASGALLKAGQVPESLSKR ESSWCHVRLVDDDNQDVPIGTPGNMLVRGPGLFSGYWSNGRIESAELADGWFHLGDVF VRHADGSLDFVDRSKYLIKTGGENVYPAEIERVLLAHPDVIEAAVVRRSDDRWGEVPV AFVALKGESRPLDFLQAYCREHLAGYKVPKEFRVISAAAFPRNSTGKIQKRQVEALLR S" misc_feature 1724218..1725702 /locus_tag="Alide2_1631" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature 1724302..1725717 /locus_tag="Alide2_1631" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene complement(1725773..1726366) /locus_tag="Alide2_1632" /db_xref="GeneID:10482669" CDS complement(1725773..1726366) /locus_tag="Alide2_1632" /inference="protein motif:PFAM:PF08359" /note="PFAM: Transcription regulator YsiA, C-terminal; KEGG: azc:AZC_4590 transcriptional regulator" /codon_start=1 /transl_table=11 /product="tetracycline transcriptional regulator YsiA domain-containing protein" /protein_id="YP_004387540.1" /db_xref="GI:330824237" /db_xref="InterPro:IPR013570" /db_xref="GeneID:10482669" /translation="MARPAGVSGADTKQAIRAAAIQRIYRHGYEAMNLRGLAADVGLR VGSLHNYIPQKQEFLANLLDEIMTELLADFETHMAGVSDPQEALRQFVSFHVQWHTAR KEEVFIGNMELRSLAPEQYARVAAKRKQYEKHLTAILSKGKKLGVWTIENPGITAKAI LALLTGVSNWYRPDGSLSQPRLTKLYQLMVERMLRNP" misc_feature complement(1725782..1726294) /locus_tag="Alide2_1632" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" gene complement(1726509..1727345) /locus_tag="Alide2_1633" /db_xref="GeneID:10482670" CDS complement(1726509..1727345) /locus_tag="Alide2_1633" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387541.1" /db_xref="GI:330824238" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482670" /translation="MPSAINRTDVRYFMYHDHMQLVIDTRLPGGVRRITLNRPEAKNA FDAEMMQAISQSFRNAAKDPETRVVVLSGAGSHFCAGGDIEWMKETLAASQMLKRERA QAVSDMLGSVHALPQPLVAEVKGAAMGGGFGLVCCADFVVADSRAKFALSETRLGIVP AAISPYVVAALGVRRANRLALAGTLIDAQEAKELGLATHVAAPGGTAEAVDSLLHELL CSATGAQRLTKALFRQMASPVSDESNAALAVEALVNAWNQQEAIAGLDAFLNKAAPPW RA" misc_feature complement(1726515..1727285) /locus_tag="Alide2_1633" /note="enoyl-CoA hydratase; Provisional; Region: PRK05995" /db_xref="CDD:180345" misc_feature complement(1726695..1727279) /locus_tag="Alide2_1633" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature complement(order(1726878..1726880,1726887..1726892, 1726956..1726964,1726968..1726970,1727094..1727108, 1727118..1727120,1727214..1727216,1727220..1727222)) /locus_tag="Alide2_1633" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(1726956..1726958,1727100..1727102)) /locus_tag="Alide2_1633" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature complement(order(1726695..1726700,1726707..1726709, 1726752..1726754,1726761..1726763,1726794..1726796, 1726803..1726808,1726812..1726817,1726821..1726826, 1726839..1726844,1726848..1726856,1726875..1726886, 1726920..1726931,1726992..1726994,1727016..1727018)) /locus_tag="Alide2_1633" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(1727347..1727490) /locus_tag="Alide2_1634" /pseudo /db_xref="GeneID:10482671" gene complement(1727592..1727676) /locus_tag="Alide2_R0025" /note="tRNA-Leu5" /db_xref="GeneID:10482672" tRNA complement(1727592..1727676) /locus_tag="Alide2_R0025" /product="tRNA-Leu" /db_xref="GeneID:10482672" gene 1727720..1728625 /locus_tag="Alide2_1635" /db_xref="GeneID:10482673" CDS 1727720..1728625 /locus_tag="Alide2_1635" /EC_number="2.5.1.47" /inference="protein motif:TFAM:TIGR01136" /note="TIGRFAM: Cysteine synthase K/M; Cysteine synthase B; KEGG: dia:Dtpsy_2386 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit" /codon_start=1 /transl_table=11 /product="cysteine synthase" /protein_id="YP_004387542.1" /db_xref="GI:330824239" /db_xref="GO:0004124" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR005856" /db_xref="InterPro:IPR005858" /db_xref="GeneID:10482673" /translation="MKTYPTIEDAIGRTPLVVLQRIGAQDNAARGNVILGKLEGNNPA GSVKDRPAVSMIRRAEERGEIRPGDTLIEATSGNTGIALAMAAAIRGYRMVLIMPEDL SVERAQTMKAFGAELILTPKSGGMEYARDLAEQMVAQGKGVVLDQFANPDNPRIHYET TGPEIWEQTEGRVTHFVSAMGTTGTITGVSRFLREKNPGVRIIGAQPCEGSRIPGIRK WPEEYQPRIYDPQMVDELVLVHQDDAEDMARRLAREEGIFGGISAAGACWVAQRIAER EQNATIVFVVCDRGDRYLSTGVFPA" misc_feature 1727738..1728616 /locus_tag="Alide2_1635" /note="cysteine synthases; Region: cysKM; TIGR01136" /db_xref="CDD:162219" misc_feature 1727753..1728604 /locus_tag="Alide2_1635" /note="CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine...; Region: CBS_like; cd01561" /db_xref="CDD:107204" misc_feature order(1727765..1727773,1727822..1727824,1727840..1727842, 1727846..1727848,1727972..1727974,1727981..1727983, 1728029..1728034,1728041..1728046,1728053..1728058, 1728218..1728223,1728473..1728481,1728485..1728493, 1728560..1728562,1728590..1728592,1728599..1728601) /locus_tag="Alide2_1635" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:107204" misc_feature order(1727861..1727863,1727951..1727953,1728257..1728274, 1728362..1728364,1728503..1728505,1728578..1728583) /locus_tag="Alide2_1635" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107204" misc_feature 1727861..1727863 /locus_tag="Alide2_1635" /note="catalytic residue [active]" /db_xref="CDD:107204" gene 1728631..1729194 /locus_tag="Alide2_1636" /db_xref="GeneID:10482674" CDS 1728631..1729194 /locus_tag="Alide2_1636" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_2385 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_004387543.1" /db_xref="GI:330824240" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="GeneID:10482674" /translation="MRYETRFCPHCATPLEFITLLEDSGDKERLRCGACGWTHWNNPT PVLAAIVEVDGRVLLARNALWPPKMFALITGFMEAGESPEEGIAREVKEETNLDARAV KLVGAYEFLRMNQVIIAYHVQAEGEVRLSPELVDHRFYELGELKCWPAGTGYALADWL RSRGHEPVFFTDEENAERRRGLDAPKD" misc_feature 1728766..1729083 /locus_tag="Alide2_1636" /note="NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for...; Region: NADH_pyrophosphatase; cd03429" /db_xref="CDD:72887" misc_feature order(1728850..1728858,1728958..1728960,1728967..1728969, 1728973..1728975,1728979..1728981) /locus_tag="Alide2_1636" /note="putative NADH binding site [chemical binding]; other site" /db_xref="CDD:72887" misc_feature order(1728853..1728858,1728862..1728864,1728898..1728900, 1728907..1728912,1728958..1728960,1728967..1728969, 1728973..1728975,1728979..1728981) /locus_tag="Alide2_1636" /note="putative active site [active]" /db_xref="CDD:72887" misc_feature 1728853..1728921 /locus_tag="Alide2_1636" /note="nudix motif; other site" /db_xref="CDD:72887" misc_feature order(1728898..1728900,1728907..1728912,1729027..1729029) /locus_tag="Alide2_1636" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:72887" gene 1729200..1729427 /locus_tag="Alide2_1637" /db_xref="GeneID:10482675" CDS 1729200..1729427 /locus_tag="Alide2_1637" /inference="protein motif:PFAM:PF01206" /note="PFAM: SirA-like; KEGG: dia:Dtpsy_2384 SirA family protein" /codon_start=1 /transl_table=11 /product="SirA-like domain-containing protein" /protein_id="YP_004387544.1" /db_xref="GI:330824241" /db_xref="GO:0005515" /db_xref="GO:0016783" /db_xref="InterPro:IPR001455" /db_xref="GeneID:10482675" /translation="MDIHKEIDTRGLNCPLPILKAKKALADMESGQLLRVVATDSGSL RDFQAFAKQTGNELVEQQTMGDEYIHVLRRR" misc_feature 1729215..1729421 /locus_tag="Alide2_1637" /note="SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-...; Region: SirA_YedF_YeeD; cd00291" /db_xref="CDD:48205" misc_feature order(1729218..1729223,1729230..1729232,1729239..1729250, 1729254..1729256) /locus_tag="Alide2_1637" /note="CPxP motif; other site" /db_xref="CDD:48205" gene complement(1729518..1730402) /locus_tag="Alide2_1638" /db_xref="GeneID:10482676" CDS complement(1729518..1730402) /locus_tag="Alide2_1638" /EC_number="2.7.7.9" /inference="protein motif:TFAM:TIGR01099" /note="TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dia:Dtpsy_2383 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase" /codon_start=1 /transl_table=11 /product="UTP-glucose-1-phosphate uridylyltransferase" /protein_id="YP_004387545.1" /db_xref="GI:330824242" /db_xref="GO:0003983" /db_xref="InterPro:IPR005771" /db_xref="InterPro:IPR005835" /db_xref="GeneID:10482676" /translation="MTTSPIRKAVFPVAGLGTRFLPATKASPKEMLPVVDKPLIQYAV EEAYEAGIRDMVFVTGRSKRAIEDHFDTAYELENELEQAGKKEMLELVRSIAPADMNC LFVRQPRSLGLGHAVLCAEPLVGDEPFAVLLADDLMVGEDGGPGVMAQMTAAFAKQGR SLLAVQEVPQEHTRRYGIVKGEAAGGALMRVDEIVEKPAPEVAPSRMGVAGRYVLTPR IFEEIRNQPRGVGGEIQLTDAIARLMQQETVYAYQYSGKRYDCGSKEGFLEATVELAL KHPQVGAQFRDYLRSLEL" misc_feature complement(1729572..1730384) /locus_tag="Alide2_1638" /note="Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Region: UGPase_prokaryotic; cd02541" /db_xref="CDD:133021" misc_feature complement(order(1729692..1729694,1729776..1729778, 1729812..1729817,1729872..1729877,1729995..1730000, 1730004..1730006,1730064..1730075,1730082..1730084, 1730313..1730318,1730358..1730369)) /locus_tag="Alide2_1638" /note="active site" /db_xref="CDD:133021" misc_feature complement(order(1729572..1729577,1729584..1729592, 1729596..1729604,1729608..1729616,1729632..1729634, 1729704..1729706,1729878..1729880,1730073..1730075, 1730079..1730081,1730085..1730090,1730175..1730180, 1730190..1730192,1730196..1730204,1730208..1730210, 1730280..1730282,1730292..1730300,1730304..1730312, 1730322..1730330,1730334..1730348,1730355..1730357)) /locus_tag="Alide2_1638" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:133021" gene complement(1730510..1733416) /locus_tag="Alide2_1639" /db_xref="GeneID:10482677" CDS complement(1730510..1733416) /locus_tag="Alide2_1639" /EC_number="6.1.1.9" /inference="protein motif:HAMAP:MF_02004" /note="TIGRFAM: Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; KEGG: ajs:Ajs_2896 valyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="Valyl-tRNA synthetase" /protein_id="YP_004387546.1" /db_xref="GI:330824243" /db_xref="InterPro:IPR002300" /db_xref="InterPro:IPR002303" /db_xref="InterPro:IPR013155" /db_xref="InterPro:IPR019499" /db_xref="GeneID:10482677" /translation="MTASHGMPFFIAMSDTPAQPGLQSLSKSFEPAALEAHWGPEWER RGYGRAGARGTGQADAGAPAFAIQLPPPNVTGTLHMGHAFNQTIMDSLTRYHRMLGHN TVWVPGTDHAGIATQIVVERQLQEQGASRHDLGRPGFVEKVWEWKEKSGNTITTQMRR LGDTVDWSREYFTMDDKLSRVVTETFVKLYEQGLIYRGKRLVNWDPVLQSAVSDLEVE NEEKDGSLWHIAYPLADGSGQLVVATTRPETMLGDVAVMVHPEDERYRHLIGKSVKLP LCDREIPVIADAYVDKEFGTGVVKVTPAHDQNDYAVGQRHQLPMICVLTLAATINDNA PQKYRGMDRFAARKAVVADLEALGLLVETKKHKLMVPICTRTGQVIEPMLTDQWFVAM NKAGQGDATGKSIAQKAIDAVAGGQVSFVPENWVNTYNQWMNNIQDWCISRQLWWGHQ IPAWYDEDGNVYVARSEAEAQAQAPGRPLRRDEDVLDTWYSSALVPFSTMGWPDQGES ATDDYNLYLPSSVLVTGYDIIFFWVARMIMMTTHFTGRVPFRHVYIHGLVLDAHGKKM SKSEGNVLDPVDLIDGIALEPLLDKRTQGLRRPETAPTVRKNTQKEFPDGIPAYGADA LRLTFAALASLGRSINFDSKRCEGYRNFCNKLWNASRFVLMNCEGFDCGLDATQGCTE SYLDFSQADRWIVSRLQKVEAEVAKGFAEYRLDNVANQIYDFVWNAFCDWYLEIAKVQ IQTGTEARQRATRRTLIRVLEAILRLAHPIIPFVTEALWQVVAPIAGLPGASIAIAAY PQAQPAKIDEAAEAYVARLQQMVDACRTLRGEMGVSPAQRLPLLAMADTAEDAAFLRA NAAVLQNLAKLSEVKVFDDAPAWAAAAQAAPVNVVGSARLALFVEIDVAAEKARLSKE AARLAGEIAKANGKLGNEAFVAKAPPAVIEQEKKRVADFGATLSRIQEQLARLG" misc_feature complement(1730513..1733350) /locus_tag="Alide2_1639" /note="valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729" /db_xref="CDD:180225" misc_feature complement(<1732766..1733230) /locus_tag="Alide2_1639" /note="catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817" /db_xref="CDD:185677" misc_feature complement(1733171..1733182) /locus_tag="Alide2_1639" /note="HIGH motif; other site" /db_xref="CDD:185677" misc_feature complement(1731494..>1732303) /locus_tag="Alide2_1639" /note="catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817" /db_xref="CDD:185677" misc_feature complement(order(1731719..1731721,1731743..1731754, 1731821..1731823,1731833..1731838,1731842..1731847, 1731941..1731943,1731950..1731952)) /locus_tag="Alide2_1639" /note="active site" /db_xref="CDD:185677" misc_feature complement(1731710..1731724) /locus_tag="Alide2_1639" /note="KMSKS motif; other site" /db_xref="CDD:185677" misc_feature complement(1731077..1731496) /locus_tag="Alide2_1639" /note="Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962" /db_xref="CDD:153416" misc_feature complement(order(1731203..1731205,1731212..1731217, 1731239..1731241,1731260..1731262,1731269..1731271, 1731431..1731436,1731440..1731445,1731452..1731457, 1731464..1731469,1731473..1731475,1731482..1731487, 1731491..1731493)) /locus_tag="Alide2_1639" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153416" misc_feature complement(order(1731203..1731205,1731212..1731217, 1731227..1731229,1731431..1731436,1731440..1731445, 1731452..1731454)) /locus_tag="Alide2_1639" /note="anticodon binding site; other site" /db_xref="CDD:153416" misc_feature complement(1730513..1730710) /locus_tag="Alide2_1639" /note="Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458" /db_xref="CDD:151031" gene complement(1733544..1734149) /locus_tag="Alide2_1640" /db_xref="GeneID:10482678" CDS complement(1733544..1734149) /locus_tag="Alide2_1640" /inference="similar to AA sequence:KEGG:Bpro_1263" /note="KEGG: pol:Bpro_1263 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387547.1" /db_xref="GI:330824244" /db_xref="GeneID:10482678" /translation="MRPPAWCTPARQGLAGLLLAALLASPPLRQWLEASMWRHMLLQF PPWMLAGALLAAALPPRARGGIARWNAHGIAGLVGVGVALSVLMVPRVLDLALQDAGT EAAKCAALLLAGAAIRLSWGPAGLVVQCFFLGMQLPMMVVVGQLYIDSPLRLCNAYLL DDQERLGRWLIAVAALLALAWLAHAAWRLVRREDARLAGID" gene complement(1734146..1734781) /locus_tag="Alide2_1641" /db_xref="GeneID:10482679" CDS complement(1734146..1734781) /locus_tag="Alide2_1641" /inference="protein motif:PFAM:PF02630" /note="PFAM: Copper chaperone SCO1/SenC; KEGG: net:Neut_1585 hypothetical protein" /codon_start=1 /transl_table=11 /product="electron transport protein SCO1/SenC" /protein_id="YP_004387548.1" /db_xref="GI:330824245" /db_xref="InterPro:IPR003782" /db_xref="GeneID:10482679" /translation="MLRTALLSAVLVLCGLAAARWLTYDFQVWTDEGARRLEVALRPV QAPPVAVQGPGVAAPDLPALLAAGGGATVVDFFYTHCETVCLSLGSSFQQLQAALQAD QSKGEASGVRLLSISFDGARDDPAALQAYARGLRADPALWRFVRVPDGAQQQALLRRL GVVVVPDGRGDYEHNAALLVFDARGRMVRVFDIAEQQLALDYARHLARRPR" sig_peptide complement(1734722..1734781) /locus_tag="Alide2_1641" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 20" misc_feature complement(1734206..1734559) /locus_tag="Alide2_1641" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:193797" gene complement(1734789..1735382) /locus_tag="Alide2_1642" /db_xref="GeneID:10482680" CDS complement(1734789..1735382) /locus_tag="Alide2_1642" /inference="protein motif:PFAM:PF00034" /note="PFAM: Cytochrome c, class I; KEGG: net:Neut_1584 cytochrome c, class I" /codon_start=1 /transl_table=11 /product="cytochrome c class I" /protein_id="YP_004387549.1" /db_xref="GI:330824246" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10482680" /translation="MSQDPVTRAQQRENEDPEEAIRPMPLSALLVAVAMVLWAVVYIL YTEPLDLSQWGDQRTRAELSGPAPAAPGAAVDGKALFAAQCAACHQATGLGLPGVFPP LDGSEWVQGEPRVLANILLHGITGEITVKGTRYQGAMPSFQQLGDAELAGIASFIRSS WSNKADAVQPELFAKERKASDRTTPFEGEAALKALQQ" misc_feature complement(1734900..1735157) /locus_tag="Alide2_1642" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene complement(1735396..1736043) /locus_tag="Alide2_1643" /db_xref="GeneID:10482681" CDS complement(1735396..1736043) /locus_tag="Alide2_1643" /inference="protein motif:PFAM:PF02433" /note="PFAM: Cytochrome c oxidase, monohaem subunit/FixO; KEGG: net:Neut_1583 cytochrome c oxidase, mono-heme subunit/FixO" /codon_start=1 /transl_table=11 /product="cytochrome C oxidase mono-heme subunit/FixO" /protein_id="YP_004387550.1" /db_xref="GI:330824247" /db_xref="InterPro:IPR003468" /db_xref="GeneID:10482681" /translation="MENEVKLAAGTMVTFAIAVSALVILPYIQVRDVKPPEGLKPYTS AELRGRSVYIANGCVYCHSQQPRSESFAPDAKRGWGRASVPGDYVYDKPHLLGSMRTG PDLMNIGVRQPSKDWHLGHLYQPRAYVPGSIMPSYPYLFEIKDKAEPGEEALNLPPGT APAGKVVVARPEMLDLVKYLLSLKREYPVLSPEPHEAAGAKTPSAPPAGKPASAS" misc_feature complement(<1735513..1736043) /locus_tag="Alide2_1643" /note="Cytochrome C oxidase, mono-heme subunit/FixO; Region: FixO; cl01130" /db_xref="CDD:186349" gene complement(1736033..1737688) /locus_tag="Alide2_1644" /db_xref="GeneID:10482682" CDS complement(1736033..1737688) /locus_tag="Alide2_1644" /EC_number="1.9.3.1" /inference="protein motif:PRIAM:1.9.3.1" /note="KEGG: net:Neut_1582 cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I" /codon_start=1 /transl_table=11 /product="cytochrome-c oxidase" /protein_id="YP_004387551.1" /db_xref="GI:330824248" /db_xref="InterPro:IPR000883" /db_xref="GeneID:10482682" /translation="MDSAILSLLGAFLLSIIGLFGFIWSLRKGLLVENPKAASAIFAS GEIGHIDDPALGHAGQKRLQAAAAEPGDSTHPPDAREIADRVAADRSSAFPVFMFIAF ACMWLLFGGIAGLTASLKLHWPDWLVSEAWMTFGRIRTVHLTAVLYGWITNAELGVII WLMPRLLRTPLIGPMWIMLGGALVNVAIASGIGAIGAGWTDGMEYLEMPWQIGIFFAA GMVCIIGPVLYTLVNRKSESLYVTTWYHTAGLLWITLLFIVGKMPGVHFGVQQAAMNW WYGHNVLGLWFTPVAVGAIYYFLPKIIARPIRSYNLSILGFWTLAFFYAQVGGHHLVG GPVPGWLVTLSIVQSMMMIIPVLAFSINMGLTMKGRMRLGVYSPTLRFMMFGGLMYLL SSLQGSFEALRSVQAVTHFTHFTVAHAHLGAYGFVTMVLFGAIYFMMPRILHWEWPFP RLISWHFWLAAVGILIYFVGLSYGGWLQGLAMLDASRPFMDSVAVTIPWLQWRSVGGA LMVASHLVFVGHFLAMALRFGPDRAGAALFSTQPKARELAHGE" misc_feature complement(1736114..1737547) /locus_tag="Alide2_1644" /note="Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily...; Region: Heme_Cu_Oxidase_I; cl00275" /db_xref="CDD:193743" misc_feature complement(order(1737086..1737088,1737098..1737100, 1737116..1737121,1737296..1737298,1737305..1737307, 1737329..1737331,1737338..1737340,1737524..1737526)) /locus_tag="Alide2_1644" /note="D-pathway; other site" /db_xref="CDD:29930" misc_feature complement(order(1736174..1736176,1736240..1736245, 1736417..1736422,1736429..1736431,1736450..1736452, 1737215..1737217,1737368..1737370,1737380..1737385, 1737395..1737397,1737416..1737418,1737461..1737463, 1737479..1737481)) /locus_tag="Alide2_1644" /note="Low-spin heme binding site [chemical binding]; other site" /db_xref="CDD:29930" misc_feature complement(order(1736243..1736245,1736456..1736461, 1736471..1736473,1736870..1736875,1736888..1736890)) /locus_tag="Alide2_1644" /note="Putative water exit pathway; other site" /db_xref="CDD:29930" misc_feature complement(order(1736435..1736437,1736696..1736701, 1736849..1736851)) /locus_tag="Alide2_1644" /note="Binuclear center (active site) [active]" /db_xref="CDD:29930" misc_feature complement(order(1736612..1736614,1736621..1736623, 1736696..1736701,1736804..1736806,1736837..1736839, 1736849..1736851)) /locus_tag="Alide2_1644" /note="K-pathway; other site" /db_xref="CDD:29930" misc_feature complement(order(1736240..1736245,1736456..1736461, 1736696..1736698)) /locus_tag="Alide2_1644" /note="Putative proton exit pathway; other site" /db_xref="CDD:29930" gene complement(1737942..1739231) /locus_tag="Alide2_1645" /db_xref="GeneID:10482683" CDS complement(1737942..1739231) /locus_tag="Alide2_1645" /inference="protein motif:PFAM:PF07219" /note="PFAM: HemY, N-terminal; KEGG: ajs:Ajs_2893 HemY domain-containing protein" /codon_start=1 /transl_table=11 /product="HemY domain-containing protein" /protein_id="YP_004387552.1" /db_xref="GI:330824249" /db_xref="InterPro:IPR010817" /db_xref="GeneID:10482683" /translation="MRAALWFLALFGAAVALALFAGNNQGTVTVFWPPYRVDLSLNLV VVLLLGGFTLLYAALRGLSALLQLPLQARRWRLQQKERAMHGALLDALSQMLAGRFLR ARKAAESAIEQEKALEDARHGLPHGRQLRTLAHLVAAESSHALQDRGTRESHLQLALD SIPERGPASILELREGAQLRAARWSLDERDASTALERLSALPAGTARRTLALRARLKA TRLSHMTEQALETARLLGKHRAFSPAAAESIVRGLAVELINGAHDPSQLQRIWLGLES AERGMPEIAVQAAQRLSRLGGEAAQVRAWLLPVWERMVDPAQSALPDQQALKVVQALE ASLEGLDALWLARIEAAQQANPRDARLQYLSAVACMQRELWGKAQHLFTQAAQQLRDA PLRASAWRHLAELAGQRGDGAAAAHAWQQAALQRTAD" sig_peptide complement(1739166..1739231) /locus_tag="Alide2_1645" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.863 at residue 22" misc_feature complement(1738017..1739054) /locus_tag="Alide2_1645" /note="Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]; Region: HemY; COG3071" /db_xref="CDD:32885" gene complement(1739257..1740336) /locus_tag="Alide2_1646" /db_xref="GeneID:10482684" CDS complement(1739257..1740336) /locus_tag="Alide2_1646" /inference="protein motif:PFAM:PF04375" /note="PFAM: HemX; KEGG: ajs:Ajs_2892 protein of unknown function DUF513, HemX" /codon_start=1 /transl_table=11 /product="hemX domain-containing protein" /protein_id="YP_004387553.1" /db_xref="GI:330824250" /db_xref="InterPro:IPR007470" /db_xref="GeneID:10482684" /translation="MSNESPPELTASAPPAPRTPTPSSGSGAALFTLSVISMAALVGS ALLWQRLSSIQEQLARQTADSGAQAIEARALAQQAQDLARDTSARLAVAEARVGEVAL QRSQLEELMQSLSRSRDENLVVDIDAGLRLAQQQAQLTGSLQPLVAALRSASQRIERA AQPRLAPVQRAMGQDLERLEHASVTDTAGLLGRLDDLVRQVDDLPLVSGVAQAAAMRH QAGNGQPAAAAAAAASEPRWQAALRRTWEGVRDETRGLVRVSRIDHPDAMLLAPDQAF FLRENLKLKLLNARLALLARRMDSARTDLAAATAALNKYFDPASRRTQNAATALQQLQ SHTKAAETPQLDDTFAALATAAAGR" misc_feature complement(1739506..>1740246) /locus_tag="Alide2_1646" /note="bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed; Region: PRK06975" /db_xref="CDD:180782" gene complement(1740326..1741150) /locus_tag="Alide2_1647" /db_xref="GeneID:10482685" CDS complement(1740326..1741150) /locus_tag="Alide2_1647" /inference="similar to AA sequence:KEGG:Ajs_2891" /note="KEGG: ajs:Ajs_2891 uroporphyrinogen-III synthase" /codon_start=1 /transl_table=11 /product="uroporphyrinogen-III synthase" /protein_id="YP_004387554.1" /db_xref="GI:330824251" /db_xref="GeneID:10482685" /translation="MLSVAAPPRAIVTRPAREAAQWVTDLQAHGIAAAALPLIAIGAV ADPALREALQRARARLGSYRAVMFVSGNAVQYFFEENQAPGLSQKALAAINTRVWAPG PGTVAALRQTGLPASRIDAPGADAAQFDSEALWQVVAPQISPGDRVLVVRGSSAPAAE GGNGREWLAGQISAAGGAVDFVAAYERRAPRLDAAGQALARTAAGDGSLWLLSSSEAV THLAAALPGQDWSRARALATHPRIAQAARAAGFGTVLECRPSFAEVVASIESPHEQ" misc_feature complement(1740353..1741129) /locus_tag="Alide2_1647" /note="Uroporphyrinogen-III synthase [Coenzyme metabolism]; Region: HemD; COG1587" /db_xref="CDD:31775" misc_feature complement(1740347..1741120) /locus_tag="Alide2_1647" /note="Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations...; Region: HemD; cd06578" /db_xref="CDD:119440" misc_feature complement(order(1740500..1740514,1740590..1740592, 1740596..1740598,1740692..1740694,1740839..1740841, 1740935..1740943,1741109..1741111)) /locus_tag="Alide2_1647" /note="active site" /db_xref="CDD:119440" gene complement(1741144..1742073) /locus_tag="Alide2_1648" /db_xref="GeneID:10482686" CDS complement(1741144..1742073) /locus_tag="Alide2_1648" /EC_number="2.5.1.61" /inference="protein motif:HAMAP:MF_00260" /note="PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; KEGG: dia:Dtpsy_2377 porphobilinogen deaminase" /codon_start=1 /transl_table=11 /product="Porphobilinogen deaminase" /protein_id="YP_004387555.1" /db_xref="GI:330824252" /db_xref="InterPro:IPR000860" /db_xref="InterPro:IPR022417" /db_xref="InterPro:IPR022418" /db_xref="GeneID:10482686" /translation="MTTSSALPPIVIATRESQLALWQAEHVQALLAARGHSVSLLGMT TRGDQILDRTLSKVGGKGLFVKELEVALEEGRADIAVHSLKDVPMELPDGFALACIME REDPRDAFVSPHHASLDELPQGAVVGTSSLRRQVLLQALRPDLKIEPLRGNVQTRLRK LDEGQYAAIVLAAAGLKRLGLHERIRSVFEPGQMLPAAGQGALGIEIRSQRQDLRDAL APLAHERTWLTVTAERAVSRAMGGSCSMPLAAHGVWSGDTLRLQAAWGDVEGRLPLVR AEGSSRVATLDEADALGLAVAGRLRAAGAVAAC" misc_feature complement(1741210..1742049) /locus_tag="Alide2_1648" /note="porphobilinogen deaminase; Reviewed; Region: hemC; PRK00072" /db_xref="CDD:178840" misc_feature complement(1741207..1742046) /locus_tag="Alide2_1648" /note="Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of...; Region: HMBS; cd00494" /db_xref="CDD:29604" misc_feature complement(order(1741237..1741239,1741243..1741245, 1741264..1741266,1741273..1741275,1741288..1741290, 1741324..1741326,1741330..1741332,1741342..1741344, 1741363..1741365,1741372..1741377,1741387..1741389, 1741396..1741398,1741417..1741419,1741471..1741494, 1741540..1741545,1741552..1741554,1741615..1741617, 1741654..1741656,1741666..1741671,1741675..1741677, 1741750..1741767,1741771..1741776,1741801..1741803, 1741807..1741824,1742008..1742010,1742023..1742025)) /locus_tag="Alide2_1648" /note="domain interfaces; other site" /db_xref="CDD:29604" misc_feature complement(order(1741342..1741344,1741471..1741476, 1741483..1741485,1741540..1741542,1741549..1741551, 1741558..1741566,1741603..1741605,1741624..1741626, 1741672..1741677,1741681..1741689,1741816..1741821, 1741825..1741827,1742005..1742007,1742017..1742019)) /locus_tag="Alide2_1648" /note="active site" /db_xref="CDD:29604" gene 1742193..1745036 /locus_tag="Alide2_1649" /db_xref="GeneID:10482687" CDS 1742193..1745036 /locus_tag="Alide2_1649" /EC_number="4.1.1.31" /inference="protein motif:PRIAM:4.1.1.31" /note="KEGG: dia:Dtpsy_2376 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxylase" /protein_id="YP_004387556.1" /db_xref="GI:330824253" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR021135" /db_xref="GeneID:10482687" /translation="MTAPARKTDAAASPARRTDKDLPLIQDIRLLGRILGDVIREQEG VAAYEVVEQVRKLSVAFRRDADHEADRMLKKLLKSLTGDQTVSVIRAFTYFSHLANLA EDRHHIRRRAVHERAGSSQEGSIEVALARLRWAGIAPRTVAQTLATSYVAPVLTAHPT EVQRKSILDAEREIAQLLARRDDILARAQLYNSAKDTVSPRELAANEAQLRARVAQLW QTRLLRYSKLTVADEIENALSYYESTFLQEIPRIYADLERELGGNQSVASFLRMGQWI GGDRDGNPNVSAATLALALRRQSDVALRHYLTEVHHLGRELSLSANLVQVSPEMQELA VRSPDTSEHRQDEPYRRVLAGVYARLAATLKDLSGGDAARHAVAPQNAYVSAEEFLAD LRVIEASLQSHRGAALTAERLRPLIRAVEVFGFHLATVDLRQSSDQHEHVVAELLATA RVQADYAALPEPERRALLLRLLCDARPLRVVGAQYSELAMNELAIFETARLMRERYGK DAIRHYIISHTETVSDLLEVLLLQKEVGLMRGTLDAGACADLIVVPLFETIEDLRNAA PIMREFYAIPGIAQLVRASGAEQDIMLGYSDSNKDGGIFTSNWELYRAEIALVALFDE LNAAKGGAPIRLRMFHGRGGTVGRGGGPSYQAILAQPPGTVRGQIRLTEQGEVIASKY ANPEIGRRNLETLVAATLEATLLQPTKPATKAFLEAAEQLSRDSMAAYRALVYETPGF VDYFFGATPIREIAQLNIGSRPASRKPSQRIEDLRAIPWGFSWGQCRLTLPGWFGFGA AVQAFVEAPGQDPKSRLALLQKMYRQWPFFRTLLSNMDMVLAKSDLALASRYSELVAD ARLRKKVFSAIEQEWQRTSEALTRITGEKQRLAANTALARSMRHRFPYIDPLHHLQVE LVRRWRAGQGDERVQTGIHICINGIAAGLRNTG" misc_feature 1742238..1745033 /locus_tag="Alide2_1649" /note="Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]; Region: COG1892; cl14656" /db_xref="CDD:187410" misc_feature 1742250..1745033 /locus_tag="Alide2_1649" /note="Phosphoenolpyruvate carboxylase [Energy production and conversion]; Region: Ppc; COG2352" /db_xref="CDD:32499" gene complement(1745069..1745608) /locus_tag="Alide2_1650" /db_xref="GeneID:10482688" CDS complement(1745069..1745608) /locus_tag="Alide2_1650" /inference="protein motif:PFAM:PF05280" /note="PFAM: Flagellar transcriptional activator FlhC; KEGG: ajs:Ajs_2885 transcriptional activator FlhC" /codon_start=1 /transl_table=11 /product="flagellar transcriptional activator FlhC" /protein_id="YP_004387557.1" /db_xref="GI:330824254" /db_xref="GO:0003677" /db_xref="GO:0016563" /db_xref="InterPro:IPR007944" /db_xref="GeneID:10482688" /translation="MSAPAKSVLNESKQIERAAMLIEMGARMQVLESETTLSYERLIR LYKEIAGKSPSKGQLPFSTDWFLTWQENIHSSLFLNIYEYLSKGVSLDSVELLTKAYR LYNEQVAAAQIEPLLSFTRAWRLVKFVDAGMLTRTKCSQCGGQFVTELYENRHYTCGL CNPPARAGKSKSAGALTLH" misc_feature complement(1745078..1745602) /locus_tag="Alide2_1650" /note="Flagellar transcriptional activator (FlhC); Region: FlhC; cl05036" /db_xref="CDD:186643" gene complement(1745645..1745974) /locus_tag="Alide2_1651" /db_xref="GeneID:10482689" CDS complement(1745645..1745974) /locus_tag="Alide2_1651" /inference="protein motif:PFAM:PF05247" /note="PFAM: Flagellar transcriptional activator; KEGG: ajs:Ajs_2884 flagellar transcriptional activator, FlhD subunit" /codon_start=1 /transl_table=11 /product="flagellar transcriptional activator" /protein_id="YP_004387558.1" /db_xref="GI:330824255" /db_xref="GO:0003677" /db_xref="GO:0016563" /db_xref="InterPro:IPR007911" /db_xref="GeneID:10482689" /translation="MTSEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGLNEEAAD ILASLSAAQVLKLASRNTLLCSFRVDDELVWSLLTNHNTPRKAASEATNTLHANILMA SRVSEVL" misc_feature complement(1745654..1745974) /locus_tag="Alide2_1651" /note="Flagellar transcriptional activator (FlhD); Region: FlhD; cl05012" /db_xref="CDD:186641" gene complement(1746201..1746677) /locus_tag="Alide2_1652" /db_xref="GeneID:10482690" CDS complement(1746201..1746677) /locus_tag="Alide2_1652" /inference="protein motif:TFAM:TIGR00754" /note="KEGG: dia:Dtpsy_2370 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein" /codon_start=1 /transl_table=11 /product="bacterioferritin" /protein_id="YP_004387559.1" /db_xref="GI:330824256" /db_xref="GO:0008199" /db_xref="InterPro:IPR002024" /db_xref="InterPro:IPR008331" /db_xref="GeneID:10482690" /translation="MQGDAQVISHLQAQLKNELTAINQYFVHYRMLKHWGFDKLAKKE YEESIGEMKHADKLMDRIFMLDGLPNLQDLGKLQIGEDVPEILECDLRAEHGAQATVK EGIAYCESVRDYVSRDLLQEILEDTEEHIDFLETQIELVNKVGLQNYLQSQMGNAD" misc_feature complement(1746216..1746674) /locus_tag="Alide2_1652" /note="Bacterioferritin, ferritin-like diiron-binding domain; Region: Bacterioferritin; cd00907" /db_xref="CDD:153099" misc_feature complement(1746246..1746656) /locus_tag="Alide2_1652" /note="Ferritin-like domain; Region: Ferritin; pfam00210" /db_xref="CDD:189451" misc_feature complement(order(1746510..1746512,1746522..1746524, 1746543..1746545,1746588..1746590,1746609..1746611, 1746633..1746635)) /locus_tag="Alide2_1652" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:153099" misc_feature complement(order(1746297..1746302,1746375..1746377, 1746387..1746389,1746396..1746401,1746516..1746518, 1746525..1746527,1746603..1746605,1746615..1746620, 1746624..1746629)) /locus_tag="Alide2_1652" /note="ferroxidase pore; other site" /db_xref="CDD:153099" misc_feature complement(order(1746288..1746290,1746297..1746299, 1746375..1746377,1746396..1746398,1746516..1746518, 1746525..1746527,1746603..1746605,1746624..1746626)) /locus_tag="Alide2_1652" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153099" gene 1746893..1747468 /locus_tag="Alide2_1653" /db_xref="GeneID:10482691" CDS 1746893..1747468 /locus_tag="Alide2_1653" /EC_number="1.11.1.15" /inference="protein motif:TFAM:TIGR03137" /note="TIGRFAM: Peroxiredoxin; KEGG: xtr:100496295 alkyl hydroperoxide reductase subunit C-like; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal" /codon_start=1 /transl_table=11 /product="peroxiredoxin" /protein_id="YP_004387560.1" /db_xref="GI:330824257" /db_xref="GO:0051920" /db_xref="InterPro:IPR000866" /db_xref="InterPro:IPR017559" /db_xref="InterPro:IPR019479" /db_xref="GeneID:10482691" /translation="MSLINTQVQPFKTTAFVNRGGKGEFIEVTEQSLKGKWSVLIFMP AAFTFNCPTEIEDAAEHYAEFQKAGAEVYIVTTDTHFSHKVWHETSAAVGKAKFPLVG DPTHQLTNAFGVHIPEEGLALRGTFVINPDGVIKTLEIHSNEIARDVSETLRKLKAAQ FTAAHPDQVCPAKWKEGAKTLTPSLDLVGKI" misc_feature 1746893..1747465 /locus_tag="Alide2_1653" /note="peroxiredoxin; Region: AhpC; TIGR03137" /db_xref="CDD:163149" misc_feature 1746902..1747423 /locus_tag="Alide2_1653" /note="Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic...; Region: PRX_Typ2cys; cd03015" /db_xref="CDD:48564" misc_feature order(1746902..1746904,1747037..1747042,1747049..1747051, 1747229..1747231,1747259..1747261,1747298..1747306, 1747310..1747318,1747328..1747333,1747352..1747354, 1747400..1747411) /locus_tag="Alide2_1653" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48564" misc_feature order(1747031..1747033,1747133..1747138,1747202..1747204, 1747208..1747210,1747244..1747246) /locus_tag="Alide2_1653" /note="decamer (pentamer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:48564" misc_feature order(1747034..1747036,1747043..1747045,1747262..1747264) /locus_tag="Alide2_1653" /note="catalytic triad [active]" /db_xref="CDD:48564" misc_feature order(1747043..1747045,1747400..1747402) /locus_tag="Alide2_1653" /note="peroxidatic and resolving cysteines [active]" /db_xref="CDD:48564" gene 1747564..1749132 /locus_tag="Alide2_1654" /db_xref="GeneID:10482692" CDS 1747564..1749132 /locus_tag="Alide2_1654" /EC_number="1.6.99.3" /inference="protein motif:TFAM:TIGR03140" /note="TIGRFAM: Alkyl hydroperoxide reductase, subunit F; KEGG: xtr:100496451 alkyl hydroperoxide reductase subunit F-like; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glutaredoxin" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase subunit F" /protein_id="YP_004387561.1" /db_xref="GI:330824258" /db_xref="GO:0004418" /db_xref="GO:0050660" /db_xref="GO:0051287" /db_xref="InterPro:IPR002109" /db_xref="InterPro:IPR012081" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10482692" /translation="MLDDQLKSQLAAYLERVTQPFEMVASLDDGETSAQMRELLTTIQ SLRSDKISLRTDGQDARKPSFTLQRVGAGTSLRFAGLPLGHEFTSLVLALLWTGGHPP KVEQDLIEQVRSLDGDFNFEVYMSLTCHNCPDVVQALSLMAVLNPKVKTTVIEGGAFQ QEVTEREIMAVPMVYLNGQVFGAGRMELAEIVAKLDTGAARREAAKLSAKEAFDVLIV GGGPAGAAAAVYAARKGIRTGVAAERFGGQVNDTLDIENYISIPRTEGPQFAAALQQH VNAYDVDVMNLQRAKALRPASQSGGLIEVEMDNGAVLKSKTVILSTGARWRNMNVPGE EQYRTKGVAYCPHCDGPLYKGKRVAVIGGGNSGVEAAIDLAGVVAHVTVFEFMPQLKA DAVLQKKLASLPNVDVVLNAQTTEVLGDGSKVNALAYKDRATGEEKRVELEGIFVQIG LLPNTDWLMGTVELSKFGEIVIDAKGQTSVPGVFAAGDCTTVPYKQIVIAAGAGATAA LSAFDHLIRTSVPQ" misc_feature 1747564..1749126 /locus_tag="Alide2_1654" /note="alkyl hydroperoxide reductase subunit F; Provisional; Region: PRK15317" /db_xref="CDD:185217" misc_feature 1747564..1747848 /locus_tag="Alide2_1654" /note="Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the...; Region: AhpF_NTD_N; cd02974" /db_xref="CDD:48523" misc_feature 1747819..1747821 /locus_tag="Alide2_1654" /note="catalytic residue [active]" /db_xref="CDD:48523" misc_feature 1747879..1748145 /locus_tag="Alide2_1654" /note="TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then...; Region: AhpF_NTD_C; cd03026" /db_xref="CDD:48575" misc_feature order(1747948..1747950,1747957..1747959) /locus_tag="Alide2_1654" /note="catalytic residues [active]" /db_xref="CDD:48575" misc_feature 1748632..1748835 /locus_tag="Alide2_1654" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 1749201..1750658 /locus_tag="Alide2_1655" /db_xref="GeneID:10482693" CDS 1749201..1750658 /locus_tag="Alide2_1655" /EC_number="1.11.1.6" /inference="protein motif:PRIAM:1.11.1.6" /note="KEGG: gpb:HDN1F_12050 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive" /codon_start=1 /transl_table=11 /product="Catalase" /protein_id="YP_004387562.1" /db_xref="GI:330824259" /db_xref="InterPro:IPR010582" /db_xref="InterPro:IPR018028" /db_xref="GeneID:10482693" /translation="MTDKQKLTTAFGCPVVDNQNTMTAGPRGPVLLQDVWLLEKLAHF DREVIPERRMHAKGSGAYGTFTVTNDITKYTKARIFSEVGKKTELFARFTTVAGERGA ADAERDIRGFAVKFYTEQGNWDMVGNNTPVFFLRDPLKFPDLNHAVKRDPRTNMRSAQ NNWDFWTSLPEALHQVTIVMSERGIPASYRTMHGFGSHTFSFINAANERFWVKFHFKC QQGIRNLTGAEAEALIGKDRESHQRDLYDAIEAGDFPRWKFMIQVMPEKDASRVPYNP FDLTKVWPHGDYPLIEVGVMELNRNPENFFAEVEQAAFNPASVVPGIGFSPDKMLQAR LFSYGDAQRYRLGVNHYQIPVNAPRCPAHHYHRDGAMRVDGNFGSTRGYEPNSYGEWA EQPDFREPPLSVEGSADHWNHREDSDYYSQPGALFRLMNPAQRQALFDNTAASIGGAT REVQLRHIRNCLKADPAYGAGVAKALGIPESEYAG" misc_feature 1749210..1750637 /locus_tag="Alide2_1655" /note="Catalase [Inorganic ion transport and metabolism]; Region: KatE; COG0753" /db_xref="CDD:31096" misc_feature 1749342..1750628 /locus_tag="Alide2_1655" /note="Clade 3 of the heme-binding enzyme catalase; Region: catalase_clade_3; cd08156" /db_xref="CDD:163712" misc_feature order(1749342..1749344,1749357..1749359,1749501..1749506, 1749561..1749566,1749609..1749623,1749627..1749629, 1749636..1749638,1749654..1749671,1749681..1749683, 1749690..1749692,1749882..1749884,1749891..1749893, 1749900..1749905,1749915..1749917,1749924..1749929, 1749936..1749938,1750005..1750010,1750023..1750025, 1750029..1750031,1750107..1750109,1750113..1750118, 1750122..1750124,1750131..1750133,1750152..1750157, 1750179..1750181,1750185..1750187,1750194..1750196, 1750203..1750211,1750218..1750223,1750230..1750238, 1750242..1750247,1750251..1750262,1750272..1750274, 1750284..1750289,1750293..1750295,1750302..1750304, 1750308..1750316,1750344..1750361,1750539..1750544, 1750548..1750550,1750554..1750556,1750566..1750568) /locus_tag="Alide2_1655" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:163712" misc_feature order(1749363..1749365,1749480..1749482,1749582..1749584, 1749597..1749599,1749621..1749623,1750200..1750202, 1750212..1750214) /locus_tag="Alide2_1655" /note="heme binding pocket [chemical binding]; other site" /db_xref="CDD:163712" misc_feature order(1749591..1749593,1749720..1749722,1749732..1749734, 1749741..1749743,1749747..1749749,1749777..1749779, 1749843..1749845,1749849..1749851,1750044..1750055, 1750464..1750466,1750473..1750478) /locus_tag="Alide2_1655" /note="NADPH binding site [chemical binding]; other site" /db_xref="CDD:163712" gene 1750714..1751091 /locus_tag="Alide2_1656" /db_xref="GeneID:10482694" CDS 1750714..1751091 /locus_tag="Alide2_1656" /inference="similar to AA sequence:KEGG:Mpe_A2670" /note="KEGG: mpt:Mpe_A2670 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387563.1" /db_xref="GI:330824260" /db_xref="GeneID:10482694" /translation="MRHLLLILILACLPLQSIWAAAASYCGHETAPAAAHFGHHQHLV HDGHAAAASGGCAHGHDGTSVRTGGVDMDCHVCHGVGSALYAEPAATALRLGAMRPAP FVLPLLRAPAPARPERPNWPGLA" sig_peptide 1750714..1750776 /locus_tag="Alide2_1656" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.969 at residue 21" gene 1751273..1752541 /locus_tag="Alide2_1657" /db_xref="GeneID:10482695" CDS 1751273..1752541 /locus_tag="Alide2_1657" /inference="protein motif:PFAM:PF02321" /note="PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_1332 outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="outer membrane efflux protein" /protein_id="YP_004387564.1" /db_xref="GI:330824261" /db_xref="GO:0005215" /db_xref="InterPro:IPR003423" /db_xref="GeneID:10482695" /translation="MPFVWKISRARLRALALTLAWGLAAASAAAQATPAVSPLQALFE RAWRSQPEAQALPLRRQAAQAGRDSADAWMPEPAALELQTKNDRIGSRLGAREHTVGV ALPLWLPGERARKAALGDAELQAVDSSGLAARLELAARVRESWWNWRRACSDRALAQG QLENARALAADVARRLAAGDMARSDHYQAQAVQAQAEATLAQAQGACDAARAALVVWS DGQPLPPENEALGAEPAPVLQQPQAAAYGHPALADGERQAALARRQAELAAVQTRANP ELTLSASSERGMAGDRYQQSVTLGVRLPLGAGVRAQAREAAALAQALELETRVERERA RLAAGIRAAQAQASAAAAQEQAMARNAELAGATRGFVAKAFALGEADWPTRLRAEQDA VQAERQALRARIDAAAAVSALRQALGLLPQ" sig_peptide 1751273..1751371 /locus_tag="Alide2_1657" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.666 at residue 33" gene 1752649..1753194 /locus_tag="Alide2_1658" /db_xref="GeneID:10482696" CDS 1752649..1753194 /locus_tag="Alide2_1658" /inference="similar to AA sequence:KEGG:Dtpsy_1144" /note="KEGG: dia:Dtpsy_1144 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387565.1" /db_xref="GI:330824262" /db_xref="GeneID:10482696" /translation="MHHSRTLPAALALLLGLAMPAARAHGGHDDGPAAPPAGAAPRFA AVSDRFELVGVIDGRRLTLYLDHAGDNSPVQDARLELDLGGQVVAVARVGEGLYQAEL AQPLADGEIPVTATVVAGADSDRLAADIDWHASAEAPDKGGWTRAALLAAAAGLAGVA LGLWAWLRSRRSAAARTGGAA" sig_peptide 1752649..1752723 /locus_tag="Alide2_1658" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.983 at residue 25" gene 1753191..1754303 /locus_tag="Alide2_1659" /db_xref="GeneID:10482697" CDS 1753191..1754303 /locus_tag="Alide2_1659" /inference="similar to AA sequence:KEGG:100489290" /note="KEGG: xtr:100489290 hypothetical protein LOC100489290" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387566.1" /db_xref="GI:330824263" /db_xref="GeneID:10482697" /translation="MSRRLYMRAVACLLATALALPLAAPAHEGHDEAAPAAVGESPRR QPDGSVFVPKSVQRQMNLRALAAAAGEYPQAFELAGTVAMDPNAGGKVQAALAGRLQA GPQGLPVPGQSVKKGQVLAYVVPTAGAIERSNQLAQQAELRAAQALAQRRVARLRELA DTVARKDIEAAESELHSLTQRLAAVGAGLAQRDALVAPVSGVIASSNAVAGQVVDARE LIFEVVDPARLRIEALAYEPAQAQDIASAHLALDGQAVPLRFVGAARSLREQALPLFF AGDAQALGSLALGQPVRLVVQTRSRVAGVRVPMAALQRNPSNQSIVWVKTAAEQFVPR VVGYLPLDGVSVAVIQGLAAGERVATQGAALINQVR" sig_peptide 1753191..1753277 /locus_tag="Alide2_1659" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.494 at residue 29" misc_feature 1753386..1754291 /locus_tag="Alide2_1659" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 1754317..1757436 /locus_tag="Alide2_1660" /db_xref="GeneID:10482698" CDS 1754317..1757436 /locus_tag="Alide2_1660" /inference="protein motif:TFAM:TIGR00914" /note="KEGG: tmz:Tmz1t_2382 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="CzcA family heavy metal efflux pump" /protein_id="YP_004387567.1" /db_xref="GI:330824264" /db_xref="GO:0008324" /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR004763" /db_xref="GeneID:10482698" /translation="MFKWLLENSLANRLLVLATAAVLMAYGAFTLSRTPVDVFPDLNK PTVTLMAEAGGMAAQEVEQLITFVLETSMNGLPGVESVRSTSSAGLSFVYVTFDWSVD IFRARQMVAERLAAMEEALPPGITPTMGPVSSIMGEIMQVAIPIDPARTTSMAVREYA DWVLRPRLLAIPGVAQVIPIGGEVRQFQVQPDTARMAQLGITHEQLTAALKGFSANTS GGFLELNGREYLIRHLGQTTRLQDLQNLALAAPNGQSLLLRQVAEVSFAAATKRGDAG FEGGPAVILGIQKQPTADTIALTGRIEAALAGLEKSLPEGMQAPRVTFRQASFIEASV HTLQGKLIGASVFVAVILFVFLGTLRPTVIALTAIPVSILVSALVFRYFGLSINTMTL GGLAIAIGGLVDDAVVDVENVLRRLKMDRQKKPGMRLHPIEVVKLASMEVRTGIVYAT AIIVLVFLPLFALPGIEGRLFVPLGVAFIVSTLASLLVSVTVTPVLAFYLLPRMKNLD HGDTRLLAWLKARYRSGLQAVLNRPRQAVAAGALAVLAAAAAVPLFPTTFLPPFNEGT LLIGMRLNPGVTLAESTALASQAERLVREVPEVTRVGRRSGRAELDEHAEGVHVSELD VGLLPASEMRRSMGEVQADIRARLAPLPAAISMGQPISHRIDHMLSGVRSQIAIKLFG EDLDTLRGQAESLRTRLSGIAGLADLEVEKQVLAPQITVRVDYAAAAQYGVSAAQVLA TLQGLVEGEKIAQIVEGGRRFALVVRLPDSARAPGGLAQLLLDTPRGRVPLSRLASIE EGDGPNQISRDDGRRRIVLSANAQGRPLSDVVADIRAVVDGTRLPEGYFITLGGQFQA QEEASRLVAMLAVVSLALMFVVLYARYQSARLSALIMANIPLALVGAVLGLWISGQPL SVAALIGFITLAGISVRNGILKVSHYLNLMRTEGEGFDHAMILRGSLERLSPVLMTAL VTAFALAPLLFEAERPGTEILHPVAVVIFSGLVSSTLLDTFLTPALFWLLGRRDAERL LDDKRTEAF" misc_feature 1754317..1757394 /locus_tag="Alide2_1660" /note="Putative silver efflux pump [Inorganic ion transport and metabolism]; Region: COG3696" /db_xref="CDD:33492" gene complement(1757470..1758357) /locus_tag="Alide2_1661" /db_xref="GeneID:10482699" CDS complement(1757470..1758357) /locus_tag="Alide2_1661" /inference="protein motif:HAMAP:MF_01062" /note="KEGG: aav:Aave_1381 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted" /codon_start=1 /transl_table=11 /product="phosphotransferase ydiA" /protein_id="YP_004387568.1" /db_xref="GI:330824265" /db_xref="InterPro:IPR005177" /db_xref="GeneID:10482699" /translation="MPRTPRRSRPSFNPTRPLSMLPMHTRTVFYISDGTGITAETFGN AILAQFDMRPRHVRLPFVDTVDKAHQAVRQVNHTAELEGRKPIIFTTLVNMDVLRVIQ EGCKGMLMDMFGTFVRPLEQELGIKSLHRVGRFSDITRSKEYLDRIEAINFSLDHDDG QSHRDLEGADVILIGVSRSGKTPTSLYLAMQCGLKVANYPLIPEDFERRQLPPALMPY RKKIFGLTIQPERLSEIRNERRPNSRYADLANCRYEVNEAEAMMRRAGIRWLSTTTKS IEEIATTILQEVRPERLVY" misc_feature complement(1757473..1758291) /locus_tag="Alide2_1661" /note="Domain of unknown function (DUF299); Region: DUF299; cl00780" /db_xref="CDD:186186" gene 1758523..1760913 /locus_tag="Alide2_1662" /db_xref="GeneID:10482700" CDS 1758523..1760913 /locus_tag="Alide2_1662" /EC_number="2.7.9.2" /inference="protein motif:TFAM:TIGR01418" /note="TIGRFAM: Phosphoenolpyruvate synthase; KEGG: dia:Dtpsy_2366 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate synthase" /protein_id="YP_004387569.1" /db_xref="GI:330824266" /db_xref="GO:0008324" /db_xref="InterPro:IPR000121" /db_xref="InterPro:IPR002192" /db_xref="InterPro:IPR006319" /db_xref="InterPro:IPR008279" /db_xref="GeneID:10482700" /translation="MSARFEATALVVPFENLRMSDVEVVGGKNASLGEMISQLPQGVR VPTGFATTAHAFREFLKYEGLADRISARLARLDTEDVRALAEAGAEIRGWVEAQPFPA DLEKAVREAFARLCGGNEQASFAVRSSATAEDLPDASFAGQQETFLNVVGIEDVLHKM KEVFASLYNDRAISYRVHKGFAHDVVALSAGVQRMVRSDLGAAGVMFTIDTESGFEDV VFITSSYGLGETVVQGAVNPDEFYVHKPMLKAGKKAVIRRSLGSKLIQMVFASPEEKA ATGKLVKTIDVATEQRNRYSLTDADVQQLAQYALVIEQHYGRPMDIEWGKDGQDGQLY ILQARPETVKSQAKGQAEQRYKLKGHGQVLAEGRAIGQKIGTGPVRLIHDIREMDKVQ PGDVLVTDMTDPNWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGHATDRLK DGTLVTVSCAEGDTGKIYDGLLETEVTEVQRGEMPQIATKIMMNVGNPQLAFDFAQLP NEGVGLARLEFIINNNIGVHPKAILDYPAVDADLKKAVESVARGHASPRAFYVDKVAE GVATIAAAFWPKPVIVRLSDFKSNEYRKLIGGSRYEPEEENPMLGFRGAARYISEDFG EAFAMECEALKRVRNDMGLTNVQVMVPFVRTLGQADRVTQLLAEHGLRRGENDLKLIM MCEVPSNAVLADEFLQFFDGFSVGSNDLTQLTLGLDRDSGLELLAKDFDERDPAVRAL LKRAIEACKRQGKYVGICGQGPSDHPDFALWLAGEGITSISLNPDSVIDTWQKLAG" misc_feature 1758535..1760907 /locus_tag="Alide2_1662" /note="phosphoenolpyruvate synthase; Validated; Region: PRK06464" /db_xref="CDD:180577" misc_feature 1758580..1759560 /locus_tag="Alide2_1662" /note="Pyruvate phosphate dikinase, PEP/pyruvate binding domain; Region: PPDK_N; pfam01326" /db_xref="CDD:189943" misc_feature 1759696..1759893 /locus_tag="Alide2_1662" /note="PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; cl01586" /db_xref="CDD:194171" misc_feature 1759981..1760907 /locus_tag="Alide2_1662" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene 1760930..1761247 /locus_tag="Alide2_1663" /db_xref="GeneID:10482701" CDS 1760930..1761247 /locus_tag="Alide2_1663" /inference="protein motif:TFAM:TIGR03647" /note="TIGRFAM: Sodium symporter small subunit, predicted; KEGG: ajs:Ajs_2878 hypothetical protein" /codon_start=1 /transl_table=11 /product="putative solute symporter protein" /protein_id="YP_004387570.1" /db_xref="GI:330824267" /db_xref="InterPro:IPR019886" /db_xref="GeneID:10482701" /translation="MPHRRTLTHDEHAGAPFAPDLHDARHLWLKAGLLLVWALVSFVA CFFARDLQFAVGQWQLSYWIASQGAVLMFIAIVCVYCAAMSHFERQDRAAQHKAAEAR AHD" misc_feature 1760999..1761196 /locus_tag="Alide2_1663" /note="Predicted membrane protein [Function unknown]; Region: COG4327; cl01781" /db_xref="CDD:141303" gene 1761240..1763324 /locus_tag="Alide2_1664" /db_xref="GeneID:10482702" CDS 1761240..1763324 /locus_tag="Alide2_1664" /inference="protein motif:TFAM:TIGR03648" /note="KEGG: dia:Dtpsy_2364 calcium-binding EF-hand-containing protein; TIGRFAM: Sodium/solute symporter, VC2705 subfamily; PFAM: Sodium/solute symporter" /codon_start=1 /transl_table=11 /product="putative sodium symporter protein" /protein_id="YP_004387571.1" /db_xref="GI:330824268" /db_xref="InterPro:IPR001734" /db_xref="InterPro:IPR019899" /db_xref="GeneID:10482702" /translation="MTERGAGRSYMARLNRIVALYIAGLLGFLALMAWAEQNGLSRQW IGPIFLFLTVMVYAAIGVYGRTTDPDEYYVAGRRIPPIYNGMAAAADWMSAASFISLS GALYLQGFSGTPDQPGGLAYLLGWTGGFVLVAMLVAPHLRAMNLYTIPDFFQVRYGGR WPRVIAALSAVLCSFTYVVAQIYGVGLIASRLTGVQFEIGIMLGLGGVLLCSFLGGMR AITWTQVAQYMVILLAFLIPVSWLAYKQLGNPAAPVVAGAQIGKIAQLEEGLLASEVE REVVAAYLERARDYEERLADVPAALAREREAARQRIQRLRAQNADVGLIVAASRELAS MPRDEAAARERWTREMHANYERARALGGLPRHSQAFAGDPQGTPAERQAFEDGRRNFL ALMFCLMVGTAGLPHLLTRYYTVPSVAGARTSVAWSLFFIALLYLSAPALAVLVKFEV MNNLVGSSFDQLPNWMAQWARVDASLLSVEDVNGDGIVQFGEIRFGADLIMLATPEIG GMPYVISGLVAAGGLAAALSTADGLLLTISNALVRDLYFQETRRRASPEQRVILTKFT LLTVALSAAFVAALKPSEILPMVSASFSIAASAFVPAMVLGIFWRGTTRHGAVAGMLA GLSVTMYYLLAQVDGVRELVPKMLLTDGLWFGIHPISAGVFGVPTGLAVAWLVSLATR PGRPQPVPADGL" misc_feature 1761381..>1762040 /locus_tag="Alide2_1664" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" misc_feature <1762398..1763288 /locus_tag="Alide2_1664" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" gene 1763445..1763903 /locus_tag="Alide2_1665" /db_xref="GeneID:10482703" CDS 1763445..1763903 /locus_tag="Alide2_1665" /inference="similar to AA sequence:KEGG:Ajs_2876" /note="KEGG: ajs:Ajs_2876 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387572.1" /db_xref="GI:330824269" /db_xref="GeneID:10482703" /translation="MIFVKTQAGQKALKERHGALSPRQRSAFILFDGRRTLAQVLAAT AALGITQDDVQFMIDEGLLEYASAAPQAREPEAPAQADKGGAHSASERYQAAYLIATE LTASLGLRGFRLNLAVEGTTGFESLAALAPKIRDAVGEAKYERLERALFA" gene complement(1763970..1765754) /locus_tag="Alide2_1666" /db_xref="GeneID:10482704" CDS complement(1763970..1765754) /locus_tag="Alide2_1666" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: rpi:Rpic_2638 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387573.1" /db_xref="GI:330824270" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482704" /translation="MSTYAAPVRDMLFTMKEIGGLDAICTQPSHEETTPDLVEAILHE AASYAAGVLDPLNRSGDQQGARWHDGAVSSADGFGDAWKSFCDNGWAGMPAAAEWGGQ GLPVLVSTAVLEMWKSSNLAFSLCQMLTLGAVEAIAHHGSDALKRRFLEPMVAGRWTG TMNLTEPQAGSDLAALRSRAMPEGDHYRVSGNKIFITWGEHDMAENIVHLVLARLPDA PAGVKGISLFLCPKFLANDDGTLGERNDLACTSIEHKLGIHASPTASMCFGERGGAIG YLIGEPHQGLACMFTMMNHARLNVGLEGVGVSERAYQHARAYALERVQGRPALAGSGT IAGHPDVRRMLMDMKARTEAMRALAYFCAGQMDRAAGHPDAQERTRAQALVGLLTPVV KGWCTDNALGIASDGMQVHGGMGYVEETGAAQYLRDARITTIYEGTTGIQANDLIGRK LAREGGATLKALLRRIDADAHRLIESPGPALAQIGGALAAAAHALEQATDWLLAHSDA QPQHCAAGAVPFLRLAGTVIGGWLSARMAEAAAAQLAAGTGDAGFLAAKLATGSHYAA HVLVQALMLRDIVTGGAGSTLALAVDQL" misc_feature complement(1765653..1765751) /locus_tag="Alide2_1666" /note="Acyl-CoA dehydrogenase N terminal; Region: AcylCoA_DH_N; pfam12418" /db_xref="CDD:193019" misc_feature complement(1764387..1765655) /locus_tag="Alide2_1666" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(1764402..1765634) /locus_tag="Alide2_1666" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(1764435..1764437,1764441..1764443, 1764447..1764455,1765164..1765166,1765170..1765172, 1765263..1765265,1765269..1765271,1765359..1765361)) /locus_tag="Alide2_1666" /note="active site" /db_xref="CDD:173838" misc_feature complement(1763988..>1764260) /locus_tag="Alide2_1666" /note="Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806" /db_xref="CDD:193282" gene complement(1765910..1766938) /locus_tag="Alide2_1667" /db_xref="GeneID:10482705" CDS complement(1765910..1766938) /locus_tag="Alide2_1667" /inference="protein motif:PFAM:PF00165" /note="KEGG: ppw:PputW619_3351 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004387574.1" /db_xref="GI:330824271" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR000005" /db_xref="InterPro:IPR018060" /db_xref="GeneID:10482705" /translation="MLRPATTVPIFAVHGLLGGARNRGLDTPAWRSGVLGQAGIAESL LGLEQSRVTVAQYIALFNAVKDSLDDECMGYLHGRPMRCGSFALMARSTLGERTLATA LQRLSQSFALLQDDVALVPVCEGPRRGAALEMRGGPGVHGDFLHSLLLRVFWRMLVWL HGGRLVPQGFDFAFEAPPHAAGYAQIYSGTLRFGQPRSAVWFDDAAFAQPVHRDAVAL RAFLHATPGNLVGPRLIERDASAQVRALLQQTCPEWPTLTATAQRLHMSVSALQRHLA AEGKSFQMLKDELRRDMAIVRLTSTRASLHAIAVELGFTDSTSFQRAFKGWTGSAPGD YRSQAGKA" misc_feature complement(1766306..1766869) /locus_tag="Alide2_1667" /note="Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625" /db_xref="CDD:193103" misc_feature complement(1765922..1766218) /locus_tag="Alide2_1667" /note="AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:32389" misc_feature complement(1766045..>1766158) /locus_tag="Alide2_1667" /note="SurA N-terminal domain; Region: SurA_N; pfam09312" /db_xref="CDD:150092" gene 1767282..1768496 /locus_tag="Alide2_1668" /db_xref="GeneID:10482706" CDS 1767282..1768496 /locus_tag="Alide2_1668" /inference="protein motif:PFAM:PF01094" /note="PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0182 extracellular ligand-binding receptor" /codon_start=1 /transl_table=11 /product="extracellular ligand-binding receptor" /protein_id="YP_004387575.1" /db_xref="GI:330824272" /db_xref="InterPro:IPR001828" /db_xref="GeneID:10482706" /translation="MKRLTALAAAALLAAAAALPAQAQGISGDVVKIAVLSDMSGPYA DTGGKGSVEAAKMAIADFGGTVLGKKIELVFADHQNKADVAATRARQWFDSDGVDMVM NMNNSAVAIAVNGLARERAKMVMNTGAVTTALTNEQCGPTLVHYVYDSYALTNVAVKG VLAQGKKDWFIILVDYAGGKAMANAAAEFVEAGGGRVVGQVAHPINTGDFASYVNQAQ ASKAQVVTLANASSDTVNTIKAAHNFGLTKGQVLVPQLMLINDIHGLGLRLGQGLVFA TAFYWDRTPESRAWSRRYFERMKKMPTMVQAGDYSAVTTYLQAVQAAGTDDGPAVARQ LKTMKINDAFSQNGYVREDGRMVHDMYVVQVKKPEESKAPWDYYKVLSTIPGDQAFRP LFRSTCKLVQKS" sig_peptide 1767282..1767353 /locus_tag="Alide2_1668" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 24" misc_feature 1767354..1768418 /locus_tag="Alide2_1668" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1767375..1768370 /locus_tag="Alide2_1668" /note="Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family; Region: PBP1_SBP_like_1; cd06327" /db_xref="CDD:107322" misc_feature order(1767594..1767602,1767663..1767671,1767813..1767815, 1767969..1767971,1768047..1768049) /locus_tag="Alide2_1668" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107322" gene 1768531..1769676 /locus_tag="Alide2_1669" /db_xref="GeneID:10482707" CDS 1768531..1769676 /locus_tag="Alide2_1669" /EC_number="1.3.99.13" /inference="protein motif:PRIAM:1.3.99.13" /note="KEGG: rpi:Rpic_2632 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="Long-chain-acyl-CoA dehydrogenase" /protein_id="YP_004387576.1" /db_xref="GI:330824273" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482707" /translation="MLPQLHRHSWMDESIEAFREQVRRYIAAEFSPHLDGWRRQGYVP RQVWRGFGEMGFLLPEMDEAYGGAGASLAYQLVAQDELAKAEMPNNLAVHTIASHYIR AYGTEAQKQRWLPRLVNGEMLAAIAMTEPGCGTDLKAIGTRARRDGGGYVIDGAKTFI TNGFTCNLLIVVARTGGPGSRGLSLIVLETEDLPGFRVGRLLEKIGLHASDTAELFFD GVRVPADQLLGGEEGQGFGQLMGQLPYERMLIAVPAAATIELALQLTLDYARERKVFG APLLDMQNTRFKLAEVATIAHVVRTFVNDCTQRLVDGKLDAEAAYMAKWWCTEQQCRV VDECLQLFGGYGYMTEYPIARLYAASRVQKIYGGANEVMKDLIARKL" misc_feature 1768561..1769673 /locus_tag="Alide2_1669" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1768576..1769673 /locus_tag="Alide2_1669" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1768816..1768818,1768906..1768908,1768912..1768914, 1769005..1769007,1769011..1769013,1769620..1769628, 1769632..1769634,1769638..1769640) /locus_tag="Alide2_1669" /note="active site" /db_xref="CDD:173838" gene 1769673..1770752 /locus_tag="Alide2_1670" /db_xref="GeneID:10482708" CDS 1769673..1770752 /locus_tag="Alide2_1670" /EC_number="5.1.99.4" /inference="protein motif:PRIAM:5.1.99.4" /note="KEGG: rpi:Rpic_2631 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="alpha-methylacyl-CoA racemase" /protein_id="YP_004387577.1" /db_xref="GI:330824274" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482708" /translation="MTAAQDARALARPLHGVQVLEFEGIGPGPLAARMLADMGAEVTT LARATPAAADALLGSAAGNPLHRGKRVEVADLKSPAGRARALALVSEADALIEGYRPG VMERLGLGPADCAARNPRLVYGRMTGWGQHGPLAQAAGHDLNYVALTGLLSLAARPGQ APIVPPTVLGDAGGALGLAFGIACALLDARASGRGRVVDAAIVDIVAMLGTLAQWIRA GGQLDGSQPSPFHDSPFYDVYECADGGFVSLGPVEPPFYALLLARLGLDGVDPAAQYD KAAWPALKARIAALLRSQPRAHWCALLEGSDACFAPVLGLAEAARHPHNAARGIYAPQ PSGAIDVAPAPRFRALTDSTQETSI" misc_feature 1769703..1770722 /locus_tag="Alide2_1670" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1770749..1772422 /locus_tag="Alide2_1671" /db_xref="GeneID:10482709" CDS 1770749..1772422 /locus_tag="Alide2_1671" /EC_number="6.2.1.26" /inference="protein motif:PRIAM:6.2.1.26" /note="KEGG: rpi:Rpic_2630 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="YP_004387578.1" /db_xref="GI:330824275" /db_xref="InterPro:IPR000873" /db_xref="GeneID:10482709" /translation="MNAPAQTTAPIRGCPSTMGDERQLNTTTLIRHAARTHPEQEIVY RTPDGGWARYTYADCYERVCRGANALRAIGVQPGDRVGVLDWNSRRHFELYWAIPGLG AVMLQMNLRLGAEDLGYVAGHSQARYVLVDESLLPVAEAIAAHVPGVQGWIVMSDKPL AQIQTTLAPLLHYEDLLAQAPAAMDWPEIDERSAYSACYTTGTTGRPKGVYYSHRAIY LHSTTMATNLGMTLDDCCMPITPMFHGQSWGLPQAATLLANKIVLPGRYQAEDTAPLT DAMIAEGVTVTNGAPAIFQPMLQYIETLPVKPDFRRLRMLSGATEPPLSMMRGFYELT GAEVVQAYGATETTPLVTVSRLKPTLRQKLSAEERWNLKRKQGLVVTGVDIRLLGQDG QELPHDGQSAGEICLRGPWISARYHDAADNDGRFVDGWWRSGDVGTLDADGYLKVTDR IKDVIKSGGEWISSIDMENLLMGHPAVRDAAVIGIPHAKWQERPLALVVLRPGHAATQ EELHAHLGSAFAKWQLPDQVLFVEAIPKTSVGKNDKKRMRAEHAQRYAG" misc_feature 1770812..1772407 /locus_tag="Alide2_1671" /note="long-chain-fatty-acid--CoA ligase; Validated; Region: PRK06187" /db_xref="CDD:180453" misc_feature 1770818..1772392 /locus_tag="Alide2_1671" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 1772470..1773666 /locus_tag="Alide2_1672" /db_xref="GeneID:10482710" CDS 1772470..1773666 /locus_tag="Alide2_1672" /EC_number="2.3.1.16" /inference="protein motif:TFAM:TIGR01930" /note="TIGRFAM: Thiolase; KEGG: rpi:Rpic_2629 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004387579.1" /db_xref="GI:330824276" /db_xref="GO:0008324" /db_xref="InterPro:IPR002155" /db_xref="InterPro:IPR020616" /db_xref="InterPro:IPR020617" /db_xref="GeneID:10482710" /translation="MNEHEPVIIGALRTPVGKRGGRLRQWHPVDLLGETLHQLVERTG IDPADLDDVIVGCVLQWGPQHGNLGRHAVLAAGLPESVPAVTIDRQCGSGQQAVSFAV HGVRAGAYQLVIGAGVESMSQAPLPPSFKPGEPLGPQYSPRELARYQDNPLLPQGVSS ELMNQRFGLGREMLDAFAVRSHQRAAAAAQAGRFQEQLVWLTEEPADPDSPVVAADEG VRANSDPAKMAALRPVFAADGATTAANSSQISDGAAALLIASRAYAERHGLQPRARFV STAVAAADPVIQFTAVLDSTRKALKEAGLGIGDIDLFEVNEAFAGVPLMFQREFGILD DRLNVNGGSVAIGHPPGSTGARMLTDLLCELERRGSRYGLQTICEASGTANTTIIERL DPGSRP" misc_feature 1772482..1773645 /locus_tag="Alide2_1672" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK07801" /db_xref="CDD:181123" misc_feature 1772488..1773642 /locus_tag="Alide2_1672" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(1772542..1772544,1772623..1772625,1772668..1772670, 1772677..1772679,1772689..1772691,1772722..1772733, 1772755..1772757,1772776..1772781,1772788..1772790, 1772833..1772835,1773301..1773303,1773307..1773309, 1773313..1773315,1773373..1773375,1773610..1773615) /locus_tag="Alide2_1672" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(1772740..1772742,1773511..1773513,1773601..1773603) /locus_tag="Alide2_1672" /note="active site" /db_xref="CDD:29411" gene 1773663..1774439 /locus_tag="Alide2_1673" /db_xref="GeneID:10482711" CDS 1773663..1774439 /locus_tag="Alide2_1673" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: rpi:Rpic_2628 enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387580.1" /db_xref="GI:330824277" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482711" /translation="MTEVLVHRQDAIAVLTINRPRAKNSLNRAVFDGLHAQLAQLRHD ESVRALILTGAEGVFCAGADITAFDALRAEPLLGARAAAGGMLWPALAGFPKPVIAAV EGLALGGGMELALACDIVIAGESARFGVPEVKLGAIPGGGGTQRLIRAAGKSKAMALL LTGDFMDARKACEAGIVADVVADGQALPAALAMAARIAANSPLAVALAKDAALCSFET SLAQGLEHEKRNFGVAMHSADSREGQEAFLGRRAPRFTGR" misc_feature 1773663..1774436 /locus_tag="Alide2_1673" /note="enoyl-CoA hydratase-isomerase; Provisional; Region: PRK09674" /db_xref="CDD:182026" misc_feature 1773672..1774205 /locus_tag="Alide2_1673" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1773729..1773731,1773735..1773737,1773831..1773833, 1773843..1773857,1773975..1773977,1773981..1773989, 1774053..1774058,1774065..1774067) /locus_tag="Alide2_1673" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1773849..1773851,1773987..1773989) /locus_tag="Alide2_1673" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1773927..1773929,1773951..1773953,1774014..1774025, 1774059..1774070,1774086..1774088,1774092..1774100, 1774104..1774109,1774122..1774127,1774131..1774136, 1774140..1774145,1774152..1774154,1774185..1774187, 1774194..1774196) /locus_tag="Alide2_1673" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1774471..1775253 /locus_tag="Alide2_1674" /db_xref="GeneID:10482712" CDS 1774471..1775253 /locus_tag="Alide2_1674" /EC_number="1.1.1.178" /inference="protein motif:PRIAM:1.1.1.178" /note="KEGG: rpi:Rpic_2627 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-hydroxy-2-methylbutyryl-CoA dehydrogenase" /protein_id="YP_004387581.1" /db_xref="GI:330824278" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10482712" /translation="MQLNSDIAAVITGGASGLGAATARRLAGHGVKVAIFDMNEALGQ ALSSELGGVYCNVDVTSEEQVDAAFARSRAAVGQERILVNCAGTADAVKTVGRDRKTG EIRHSQVERFNRLVQINLVGTFRCIAKSAAGMLALDPLADGDRGVIVNTASTAAVDGQ AGQASYAASKAGVMGMTLPIARDLMDEGIRVNTILPGLFGTPLVQGLPENVQQALAAT VPCPKRMGEPYEYAQAVEFLVLCGYMNAESIRVDGALRMAPR" misc_feature 1774555..1775247 /locus_tag="Alide2_1674" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1774555..1775235 /locus_tag="Alide2_1674" /note="3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830" /db_xref="CDD:162551" misc_feature order(1774579..1774587,1774723..1774731,1774921..1774929, 1774966..1774968,1774978..1774980,1775056..1775067) /locus_tag="Alide2_1674" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1774825..1774827,1774927..1774929,1774966..1774968, 1774978..1774980) /locus_tag="Alide2_1674" /note="active site" /db_xref="CDD:187535" gene complement(1775420..1776496) /locus_tag="Alide2_1675" /pseudo /db_xref="GeneID:10482713" gene complement(1776637..1777191) /locus_tag="Alide2_1676" /db_xref="GeneID:10482714" CDS complement(1776637..1777191) /locus_tag="Alide2_1676" /inference="protein motif:HAMAP:MF_00141" /note="SMART: Elongation factor P, C-terminal; TIGRFAM: Translation elongation factor P; KEGG: xtr:100493038 elongation factor P-like; HAMAP: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central" /codon_start=1 /transl_table=11 /product="Elongation factor P" /protein_id="YP_004387582.1" /db_xref="GI:330824279" /db_xref="InterPro:IPR001059" /db_xref="InterPro:IPR011768" /db_xref="InterPro:IPR013185" /db_xref="InterPro:IPR015365" /db_xref="GeneID:10482714" /translation="MKIAQEIRAGNVIMQGKDPMIVLKTEYARGGRGAATVRMKLKAL LSNMGTEVVFKADDKIDNVILDKKECTYSYFADPMYVWMDSEYNQYEVEAGNMGDAIS YLEDGMAAEVVFYDGKAISVELPTSVEREITWTEPAVKGDTSGKVLKPAKIATGFEVA VPLFVGQGDKIEIDTRTGEYRKRV" misc_feature complement(1776640..1777191) /locus_tag="Alide2_1676" /note="elongation factor P; Validated; Region: PRK00529" /db_xref="CDD:179058" misc_feature complement(1777012..1777182) /locus_tag="Alide2_1676" /note="Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207" /db_xref="CDD:191966" misc_feature complement(1776817..1776996) /locus_tag="Alide2_1676" /note="S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-...; Region: S1_EF-P_repeat_1; cd04470" /db_xref="CDD:88435" misc_feature complement(order(1776835..1776840,1776853..1776855, 1776928..1776930)) /locus_tag="Alide2_1676" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88435" misc_feature complement(1776643..1776810) /locus_tag="Alide2_1676" /note="S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-...; Region: S1_EF-P_repeat_2; cd05794" /db_xref="CDD:88469" misc_feature complement(order(1776652..1776657,1776670..1776672, 1776721..1776723)) /locus_tag="Alide2_1676" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88469" gene complement(1777351..1778433) /locus_tag="Alide2_1677" /db_xref="GeneID:10482715" CDS complement(1777351..1778433) /locus_tag="Alide2_1677" /inference="protein motif:TFAM:TIGR03837" /note="KEGG: ajs:Ajs_2874 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP015557; PFAM: Uncharacterised conserved protein UCP015557" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387583.1" /db_xref="GI:330824280" /db_xref="InterPro:IPR016633" /db_xref="GeneID:10482715" /translation="MNTSLRWDIFCQVIDNYGDIGVCWRLAAELGARGHRVRLWVDDA TALSWMAPRGAAGVQVLPWPGKAPPDGTGDVVVEAFGCEIAPDFIAAIARHTGDGGKK PLWINLEYLSAESYVERCHRLPSPLMKGPGAGLTRWFFYPGFTERTGGLLRERDLAAR QAAFDHQAWRARHGIAPHDLAISLFCYEPPALAQLLAQLGPRPGAHLLVTPGRATAAV LHEIGLKPVWMDRQQLSFSYLEPCPQPAFDEMLWACDLNLVRGEDSLVRALWAGQPFV WHIYPQHDGAHHAKLLAFLDWLQAPASLRRFHALWNGLDSAPALPLLDAATLAEWRAC TAAARARLLAQPDLLTLLLGFVAEKR" misc_feature complement(1777495..1778415) /locus_tag="Alide2_1677" /note="Uncharacterized protein conserved in bacteria (DUF2331); Region: DUF2331; cl01823" /db_xref="CDD:164000" gene complement(1778430..1779332) /locus_tag="Alide2_1678" /db_xref="GeneID:10482716" CDS complement(1778430..1779332) /locus_tag="Alide2_1678" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_2873 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387584.1" /db_xref="GI:330824281" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482716" /translation="MKLDPVSLRLFVAVMEENAIARAAAREHIAPSAASRRLAELEDQ LRVELFTRSNRGTEPTAAAYALLNLARGVLNDLDGIATQMRDYRAGVRGHVRVVANIS AITQFLPGELQRFMAAHPQVGVRLQEQISSAVAQSVAENAADVGILNHGSYGERVALL PYREDELVLIVPAGHALARRRRVRLADALPCDFVGMHPGSAINNLLTRAAAELEMPLR LRMQVTSYDALCLMVSAGLGVAVLPRGSAQNLRGTLAIRAITLAEPWARRRLSLCVRA QEPLSGVARLLVDHLRAQGTEAGA" misc_feature complement(1778433..1779311) /locus_tag="Alide2_1678" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1779144..1779311) /locus_tag="Alide2_1678" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1778460..1779035) /locus_tag="Alide2_1678" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(1778628..1778633,1778637..1778642, 1778658..1778675,1778949..1778969,1778973..1778975, 1778985..1778987,1778994..1778999,1779003..1779008)) /locus_tag="Alide2_1678" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 1779460..1780665 /locus_tag="Alide2_1679" /db_xref="GeneID:10482717" CDS 1779460..1780665 /locus_tag="Alide2_1679" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: dia:Dtpsy_2359 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387585.1" /db_xref="GI:330824282" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482717" /translation="MQETTTPAALAGVRVIEMGQLIAGPFCGKTLGEFGAEVIKIEAV GAGDPLRNWRLIKNGTSVWWQVQSRNKKSVALDLRQAEAQDIVRRLIAEADVLIENFR PGTLEGWGMSPEELHALNPGLVILRISGYGQTGPYRDLPGFGVIGEAMGGLRHLTAEP GRVPVRVGVSIGDTLAALHGAIGVMMALYHRKVNGGAGQVIDVALHEAVFNCMESLIP EYSAFGVVREAAGSALPGIAPSNAYPCQDGWVLVAGNGDSIFKRLMAAVGRQDLADDP QLADNAGRVARVAEIDAAIGAWTATLTVAQVMERLAAARVPAGKVYTARDIAEDPHYQ ARDMLLTQQTRDGDEVTVPGICPKLSATPGTIRSSAPRLGDDTDAVLAEAGLTQEQIA LLRGKGVIQ" misc_feature 1779487..1780659 /locus_tag="Alide2_1679" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1780662..1781633 /locus_tag="Alide2_1680" /db_xref="GeneID:10482718" CDS 1780662..1781633 /locus_tag="Alide2_1680" /EC_number="4.1.3.4" /inference="protein motif:PRIAM:4.1.3.4" /note="KEGG: dia:Dtpsy_2358 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase" /codon_start=1 /transl_table=11 /product="hydroxymethylglutaryl-CoA lyase" /protein_id="YP_004387586.1" /db_xref="GI:330824283" /db_xref="InterPro:IPR000891" /db_xref="GeneID:10482718" /translation="MNTVWNGAGRRIEICDVGMRDGLQMEAQFVPTEDKIALVDALSA AGLAKIEVTSFTSPTAIPALRDAEVVMREIARRPGVTYTALVPNARGAERAIESRTDE LNLVMSVSETHNLANLRMTRAQSFAALAHVVTMAQAARVPVNVSLSCVFGCPMEGDVA LDGVWDWVQRFAGLGVAGITLCDTTGMAYPSQVAQVVAQARARWPGLAFTLHFHNTRG MGLANVLAAIDAGADRFDASLGGLGGCPYAPGATGNVCTEEIVHALALMGYDTGVDLP ALMAAAARLPTLIGHEVPSQIARAGRRLDLHPVPPGFDAIRERALAR" misc_feature 1780701..1781483 /locus_tag="Alide2_1680" /note="3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; Region: DRE_TIM_HMGL; cd07938" /db_xref="CDD:163676" misc_feature order(1780719..1780724,1780731..1780733,1780821..1780823, 1780827..1780829,1780977..1780979,1781295..1781297, 1781301..1781303,1781421..1781423) /locus_tag="Alide2_1680" /note="active site" /db_xref="CDD:163676" misc_feature order(1780719..1780724,1780812..1780814) /locus_tag="Alide2_1680" /note="catalytic residues [active]" /db_xref="CDD:163676" misc_feature order(1780722..1780724,1781295..1781297,1781301..1781303, 1781421..1781423) /locus_tag="Alide2_1680" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163676" gene 1781676..1782665 /locus_tag="Alide2_1681" /db_xref="GeneID:10482719" CDS 1781676..1782665 /locus_tag="Alide2_1681" /inference="similar to AA sequence:KEGG:Dtpsy_2357" /note="KEGG: dia:Dtpsy_2357 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387587.1" /db_xref="GI:330824284" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482719" /translation="MPFTHAVTRRHAALALAAVLCVAPLAIAAQDKYPSRPITLVVPQ AAGGANDAIARVLAQRLTEQMGQSVIVDNRPGAGGTLATATLARAKHDGYTLLVTADS AHVIGPALYKNPGFDAVKDFEPVAPIATAGYVLVAHPSFPANNVADLIRLAKASPGKY AIASAGNGTLNHLIGELLQKAAGIQLQHIPYKGSAAAATDVAGGQVPLSVQSLPSSIS FIKAGKLKVLGVVNEKRVAALPDVPTIGETLKGFGQAPWYAMFAPAGTPAPIVERLQA EVARALDHKDVADKLAVVGCEPFKGTSAQLGVLVRADLPKWARVVKDTGATVD" sig_peptide 1781676..1781762 /locus_tag="Alide2_1681" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.790 at residue 29" misc_feature 1781772..1782650 /locus_tag="Alide2_1681" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1781832..1782653 /locus_tag="Alide2_1681" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1782710..1783693 /locus_tag="Alide2_1682" /db_xref="GeneID:10482720" CDS 1782710..1783693 /locus_tag="Alide2_1682" /inference="similar to AA sequence:KEGG:Ajs_2869" /note="KEGG: ajs:Ajs_2869 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387588.1" /db_xref="GI:330824285" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482720" /translation="MTTITRKRFTALALAALAPLALSTAWAQGPYPSKPVTFVVPAAA GGTTDIAARMAAQALSPVLGQSVVVDNKAGGNGTIAAAIVKRAEPDGYTLLMQYSGYH VISPHLTRAPQWEQKDFQPIANVLSAPQIIVVREGLPVKTLAELVAYAKANPGKLNYA SSGNGSLQHVTGAMLEQQGGIKMVHVPYKGTGPALQDLLGGQVDLTFGTAPPFMPHIQ SGKLRVLAVTGKERLPSLPDAPTTAEAGYPGVNATSWFALFAPAAVPKPIIDKLAADM KKVVEDPAFRKKAQEQGATADYQGPQQLGARVKADFAAWANVIKSSKIDPE" sig_peptide 1782710..1782793 /locus_tag="Alide2_1682" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 28" misc_feature 1782800..1783684 /locus_tag="Alide2_1682" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1782863..1783681 /locus_tag="Alide2_1682" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1783728..1784654) /locus_tag="Alide2_1683" /db_xref="GeneID:10482721" CDS complement(1783728..1784654) /locus_tag="Alide2_1683" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_0157 L-carnitine dehydratase/bile acid-inducible" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387589.1" /db_xref="GI:330824286" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482721" /translation="MINISLRQLEYFAAAAQHGGAARAAAALSVSQPSISKAIADLEA LWGEALFVRRHARGLELTAAGQMRHREAHALLERARALEGPRTGEEAGLLRVGCLSTL APRHLPAMLVRMRERHPQVEVEVHEGDTEALLQMLERGALDAALLYDMGLARPVRLEA VTAFVPYALLPAGHALAARTSLPVTALAQEPFILIDLPHSREYFLSLFRQAGAAPRIA HATPSIEMVRSLVANGLGVSLLTTRPVRDWSYDGKRLACRRLRGPLAAQSVVMAYPER LGAHNPRAPLFARVVRECFTRQRDAMTAPDAP" misc_feature complement(1783752..1784645) /locus_tag="Alide2_1683" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1784457..1784639) /locus_tag="Alide2_1683" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1783770..1784375) /locus_tag="Alide2_1683" /note="The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_PAO1_like; cd08412" /db_xref="CDD:176104" misc_feature complement(order(1783932..1783934,1783983..1783985, 1784055..1784057,1784157..1784159,1784211..1784213, 1784340..1784342,1784352..1784354)) /locus_tag="Alide2_1683" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176104" misc_feature complement(order(1783899..1783904,1783923..1783925, 1783953..1783958,1783965..1783970,1783980..1783988, 1783992..1784000,1784016..1784021,1784241..1784243, 1784250..1784252,1784274..1784276,1784280..1784282, 1784319..1784324,1784328..1784333,1784340..1784348)) /locus_tag="Alide2_1683" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176104" gene 1784746..1785957 /locus_tag="Alide2_1684" /db_xref="GeneID:10482722" CDS 1784746..1785957 /locus_tag="Alide2_1684" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: xtr:100493857 uncharacterized protein yfdE-like; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387590.1" /db_xref="GI:330824287" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482722" /translation="MPVPPPTIRPLDGIRILDFSRVLAGPLSTALLADLGAEVIKVEP PGGDDYRHIGPMRGGISSLFTALNRNKKSMVLDLKHPEAAGIVAQLAQEVDVVVENFR PGVAERLGVGPGLLCRANPRLVYVSVSGFGQTGPLAHLPAYDIIVQAMSGLMEATGEP DGPPTLVGEAVSDVIAGLFASWATLAALLQQRRTGQGQHVDVAMFDATLAFLVTGVGR YLFTGESARRNGNRHSFSAPFGVYRARDGHFALAVLNNRLFASLAALIGAPGFAQDAR FATDELRRAHEPELAAAIEAWAGRLGVAEVVAQLEAAGVPGSPLWTMAQALESEQGLA RGLLRAVDDPRLPGLRVPTQPVKFGGAAPNRAEPAPDLGQHTDELMAGLLQAGGERLA ALRAAGLFGPA" misc_feature 1784755..1785882 /locus_tag="Alide2_1684" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1785996..1787153 /locus_tag="Alide2_1685" /db_xref="GeneID:10482723" CDS 1785996..1787153 /locus_tag="Alide2_1685" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: xtr:100494035 short-chain specific acyl-CoA dehydrogenase, mitochondrial-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387591.1" /db_xref="GI:330824288" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482723" /translation="MNTLNRLGVTADDRAVADAVARFATGTLAPRAREIDEHGLSVTC HVPQLAELGVMGMNLPEHLGGAGVTPTAMLLSLVEISRACAATSSMIGAHYLGTDAVL IGGSPGQHARWLPRAASGEWLAGFALTEPRGGSHPADLRTRATREGEGAHYRIDGVKH FISNAKEARFLVVFAKTDPDAGARGVSAFVVETDSPGISISSPERLMGIQGAHAFEVA FDSVRVPAANRLGAEGTGFKTAMKVLDNSRLDVAATALGIAEAALADATRWMKERQIG GEPIAGKQGLQWMLADMKLRLEASWGLTLQALALRQAGQPFTLQSAMAKLHASEMAGF VADAALQIHGGYGYTREMPLERYVRDARILRIYEGSSEVQRNIIARTVLAD" misc_feature 1786077..1787147 /locus_tag="Alide2_1685" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature 1786077..1787144 /locus_tag="Alide2_1685" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature order(1786281..1786283,1786371..1786373,1786377..1786379, 1786476..1786478,1786482..1786484,1787091..1787099, 1787103..1787105,1787109..1787111) /locus_tag="Alide2_1685" /note="active site" /db_xref="CDD:173838" gene 1787361..1788326 /locus_tag="Alide2_1686" /db_xref="GeneID:10482724" CDS 1787361..1788326 /locus_tag="Alide2_1686" /inference="similar to AA sequence:KEGG:Aave_2969" /note="KEGG: aav:Aave_2969 substrate-binding region of ABC-type glycine betaine transport system" /codon_start=1 /transl_table=11 /product="glycine betaine ABC transporter substrate-binding protein" /protein_id="YP_004387592.1" /db_xref="GI:330824289" /db_xref="InterPro:IPR015168" /db_xref="GeneID:10482724" /translation="MSRTVVKMAPLAAAVACVAGLAAPAHAQETKVALGMSGWTGFAP LTLADKAGIFKKNGLDVELKMIPQKDRHLALASKAIQCAATTVETHVAWNTNGVPIVQ IFQMDKSYGADGLAVRNDVKGFADLKGKTVGVSAPGTAPHFGLAWMLSKNGMSLKDVK IVSLEPQPAAQAFISGQNDAAMTYEPYLSSVRANPQAGKILATTLDYPMVMDTVGCDP AWLKANPKAAQAMANSYFQALEMIKADPAKSYEIMGSAVKQTGEAFGKSASYLRWQDK AANQKFFAGELQQFMKDAAAILLESGVIRKLPDSYDAMYDASFIK" sig_peptide 1787361..1787444 /locus_tag="Alide2_1686" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 28" misc_feature 1787448..1788323 /locus_tag="Alide2_1686" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature 1787454..1788323 /locus_tag="Alide2_1686" /note="ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728" /db_xref="CDD:130789" gene 1788352..1789191 /locus_tag="Alide2_1687" /db_xref="GeneID:10482725" CDS 1788352..1789191 /locus_tag="Alide2_1687" /inference="protein motif:PFAM:PF00528" /note="PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: xtr:100494207 probable ABC transporter permease protein BruAb2_1124-like" /codon_start=1 /transl_table=11 /product="ABC transporter integral membrane subunit" /protein_id="YP_004387593.1" /db_xref="GI:330824290" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="GeneID:10482725" /translation="MNQAMSAAPALGRQERRPRRRGLAPLEPVSARTRVALGVGFFVL FFVVWAFFTLGGFVSPTFLASPITMAREGWLLFTEFGFLHDIGMTVWRVLGGFVMAAV VAVPLGIAMGAHKGVEAFLEPFVSFCRYLPASAFIPLLILWAGLGELQKLLVIFIGSV FQIILMVAVTVGNARKDLVEAAYTLGASSSGIVRRVLIPGAAPDIAETLRLVLGWAWT YVIVAELIGSASGIGHMITDSQALLNTGQIIFGIIVIGLIGLVSDVLFKAVNRRLFAW SAL" misc_feature 1788607..1789035 /locus_tag="Alide2_1687" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1788655..1788660,1788667..1788672,1788685..1788687, 1788712..1788723,1788727..1788756,1788763..1788768, 1788772..1788774,1788829..1788834,1788838..1788840, 1788844..1788846,1788853..1788858,1788862..1788864, 1788868..1788870,1788877..1788879,1788928..1788930, 1788970..1788975,1788982..1788984,1789003..1789014, 1789021..1789026) /locus_tag="Alide2_1687" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1788730..1788774,1789003..1789020) /locus_tag="Alide2_1687" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1788772..1788774,1788814..1788816,1789021..1789023) /locus_tag="Alide2_1687" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1788880..1788918,1788934..1788939,1788949..1788951) /locus_tag="Alide2_1687" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1789191..1789973 /locus_tag="Alide2_1688" /db_xref="GeneID:10482726" CDS 1789191..1789973 /locus_tag="Alide2_1688" /EC_number="3.6.3.36" /inference="protein motif:PRIAM:3.6.3.36" /note="PFAM: ABC transporter-like; KEGG: xtr:100494366 uncharacterized ABC transporter ATP-binding protein MJ0412-like; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Taurine-transporting ATPase" /protein_id="YP_004387594.1" /db_xref="GI:330824291" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482726" /translation="MNPLLSIQAVSRTFVSPKGQATQALLPVDFDVQENDFVTILGPS GCGKSTMLRIVAGLDHPTSGRVLLGGQPVEGPGADRGMVFQSYTLFPWLTIEQNIRFG LRERGMPEGAQKERAAYFIAKVGLRGFEQHFPKQLSGGMQQRTAIARALANDPKILLM DEPFGALDNQTRVLMQELLLGIWEAERKTVMFVTHDIDEAIFMANRVAVFSARPGRIK SEIAVHLPHPRHYRVKTSPEFMELKARLTEEIRAESMAAEAH" misc_feature 1789197..1789961 /locus_tag="Alide2_1688" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116" /db_xref="CDD:31313" misc_feature 1789203..1789865 /locus_tag="Alide2_1688" /note="NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars...; Region: ABC_NrtD_SsuB_transporters; cd03293" /db_xref="CDD:73052" misc_feature 1789314..1789337 /locus_tag="Alide2_1688" /note="Walker A/P-loop; other site" /db_xref="CDD:73052" misc_feature order(1789323..1789328,1789332..1789340,1789443..1789445, 1789671..1789676,1789773..1789775) /locus_tag="Alide2_1688" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73052" misc_feature 1789434..1789445 /locus_tag="Alide2_1688" /note="Q-loop/lid; other site" /db_xref="CDD:73052" misc_feature 1789599..1789628 /locus_tag="Alide2_1688" /note="ABC transporter signature motif; other site" /db_xref="CDD:73052" misc_feature 1789659..1789676 /locus_tag="Alide2_1688" /note="Walker B; other site" /db_xref="CDD:73052" misc_feature 1789683..1789694 /locus_tag="Alide2_1688" /note="D-loop; other site" /db_xref="CDD:73052" misc_feature 1789761..1789781 /locus_tag="Alide2_1688" /note="H-loop/switch region; other site" /db_xref="CDD:73052" gene 1789990..1790772 /locus_tag="Alide2_1689" /db_xref="GeneID:10482727" CDS 1789990..1790772 /locus_tag="Alide2_1689" /inference="protein motif:TFAM:TIGR02018" /note="TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: aav:Aave_2966 histidine utilization repressor; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator with UTRA sensor domain" /protein_id="YP_004387595.1" /db_xref="GI:330824292" /db_xref="GO:0003677" /db_xref="GO:0016564" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR010248" /db_xref="InterPro:IPR011663" /db_xref="GeneID:10482727" /translation="MAPASPARAKERNAPRLAEASPVALYQQVKDHVARRIQDGSWKA GDRLPSENELVLQFGISRMTVNRALRELAEQGRIVRVAGVGSFVAEGKPQSTLLQIAN LASEIRQRGHDYRCKVLGVERVAASMEVAAALDLHTGEPVFHALCVHLENGVPVQLED RYVNPRVVPDFIDQDFAQLQPSEFLVRNVPYDQMEHVVDAVLPTPQQARLLEMEPTQP CLLLMRRTWNRGTPVTLVRCLHPASRYRLGCRIRADGNPVFG" misc_feature 1790062..1790742 /locus_tag="Alide2_1689" /note="histidine utilization repressor, proteobacterial; Region: his_ut_repres; TIGR02018" /db_xref="CDD:188194" misc_feature 1790062..1790256 /locus_tag="Alide2_1689" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(1790065..1790067,1790134..1790136,1790140..1790145, 1790167..1790181,1790185..1790190,1790197..1790199, 1790227..1790232,1790236..1790247) /locus_tag="Alide2_1689" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 1790314..1790727 /locus_tag="Alide2_1689" /note="UTRA domain; Region: UTRA; cl06649" /db_xref="CDD:195338" gene 1790836..1792425 /locus_tag="Alide2_1690" /db_xref="GeneID:10482728" CDS 1790836..1792425 /locus_tag="Alide2_1690" /EC_number="4.3.1.3" /inference="protein motif:HAMAP:MF_00229" /note="PFAM: Phenylalanine/histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; HAMAP: Histidine ammonia-lyase; KEGG: aav:Aave_2965 histidine ammonia-lyase" /codon_start=1 /transl_table=11 /product="histidine ammonia-lyase" /protein_id="YP_004387596.1" /db_xref="GI:330824293" /db_xref="InterPro:IPR001106" /db_xref="InterPro:IPR005921" /db_xref="GeneID:10482728" /translation="MNPANPSAPDVLVLRPGHVSLAELRRIQAGGVHLRLDPAAQAGM LAAQATVQRIVDEDQVVYGINTGFGKLASTRIAHDHLADLQRNLVLSHSVGTGEPLPD PVVRMVLATKAVSLARGHSGVRPALADALLALANADVLPVIPAKGSVGASGDLAPLAH LACVLIGEGQARVQGRVVPGREAMAAVGLDPFVLGPKEGLALLNGTQVSTALALAGLF DAESVFAAGLVSGALTLEAIKGSVKPFDARIHEARGQAGQIAVAAAVRALLEGSAIDP SHPHCGRVQDPYSIRCVPQVMGACLDNLQHAARVLRIEANAASDNPLVFTDTAEVISG GNFHAEPVAFAADIVALALAEIGAIAERRLALLLDPGLSGLPAFLVRESGVNSGFMIA QVTAAALAAENQCLAHPSSVTSLPTSANQEDHVSMATYGARRLADMVRNTAVIVGIEA MAAAQGIDFDRVPAPGAAPPAPWLKSSPPIEAQLAAIRARVAFLERDRYLAPDIEAMR LWALRTCWPETLRRILPSSAS" misc_feature 1790884..1792212 /locus_tag="Alide2_1690" /note="Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL); Region: PAL-HAL; cd00332" /db_xref="CDD:176460" misc_feature 1790887..1792356 /locus_tag="Alide2_1690" /note="tyrosine 2,3-aminomutase; Region: Tyr_2_3_mutase; TIGR03832" /db_xref="CDD:163544" misc_feature order(1791019..1791027,1791031..1791033,1791037..1791039, 1791088..1791090,1791097..1791099,1791421..1791435, 1791445..1791447,1791697..1791699,1791706..1791708, 1791796..1791798,1791832..1791834) /locus_tag="Alide2_1690" /note="active sites [active]" /db_xref="CDD:176460" misc_feature order(1791034..1791039,1791094..1791096,1791103..1791126, 1791187..1791189,1791271..1791276,1791313..1791315, 1791322..1791324,1791577..1791582,1791589..1791594, 1791598..1791600,1791607..1791609,1791688..1791690, 1791694..1791702,1791706..1791711,1791718..1791723, 1791739..1791744,1791751..1791753,1791760..1791765, 1791772..1791777,1791784..1791789,1791802..1791810, 1791823..1791825,1791829..1791849,1791853..1791858, 1791865..1791867,1791877..1791879,1791898..1791900, 1791907..1791909,1791919..1791921,1791931..1791933, 1791940..1791942,1791949..1791951,1791985..1791990, 1791994..1791999,1792003..1792014,1792018..1792020, 1792024..1792041,1792045..1792056,1792087..1792107, 1792114..1792116,1792132..1792137,1792144..1792146, 1792153..1792158) /locus_tag="Alide2_1690" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176460" gene complement(1792426..1793151) /locus_tag="Alide2_1691" /db_xref="GeneID:10482729" CDS complement(1792426..1793151) /locus_tag="Alide2_1691" /inference="protein motif:TFAM:TIGR02018" /note="TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: ctt:CtCNB1_0165 transcriptional regulator, histidine; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator with UTRA sensor domain" /protein_id="YP_004387597.1" /db_xref="GI:330824294" /db_xref="GO:0003677" /db_xref="GO:0016564" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR010248" /db_xref="InterPro:IPR011663" /db_xref="GeneID:10482729" /translation="MHRPIRASSPAAVPTFQRIKDYVLQQIQSGTWQEGDAIPSEAAL AKQFEVARMTVNRALRELSDERTLTRVRGSGTFVAQQKYQSTLVQLRNIADEIAARGH VHRGELQKLERCRADAALARQFELSAAQTLFHSVVVHFENDVPIQVEDRYVNPAVAPD YLAQDFGSQTPNAYLMRVAPLQGVQFSIEAGMPGADVADMLRMDAGEPCLVLRRSTRS QGQVASVSALWHPASRYRFTGSF" misc_feature complement(1792429..1793112) /locus_tag="Alide2_1691" /note="histidine utilization repressor, proteobacterial; Region: his_ut_repres; TIGR02018" /db_xref="CDD:188194" misc_feature complement(1792915..1793112) /locus_tag="Alide2_1691" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(1792924..1792935,1792939..1792944, 1792972..1792974,1792981..1792986,1792990..1793004, 1793026..1793031,1793035..1793037,1793104..1793106, 1793110..1793112)) /locus_tag="Alide2_1691" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(1792444..1792857) /locus_tag="Alide2_1691" /note="UTRA domain; Region: UTRA; cl06649" /db_xref="CDD:195338" gene 1793294..1794772 /locus_tag="Alide2_1692" /db_xref="GeneID:10482730" CDS 1793294..1794772 /locus_tag="Alide2_1692" /inference="protein motif:PFAM:PF02133" /note="PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: ctt:CtCNB1_0166 cytosine/purines/uracil permease" /codon_start=1 /transl_table=11 /product="permease for cytosine/purines uracil thiamine allantoin" /protein_id="YP_004387598.1" /db_xref="GI:330824295" /db_xref="GO:0015205" /db_xref="InterPro:IPR001248" /db_xref="GeneID:10482730" /translation="MSSEASTPVSTGPIERRTIDMVPEDERHGSPSSQFTLWFGANMQ ITAVVDGALAVVFGAEAMAAIVGLLIGNILGGIVMALHSAQGPRLGLPQMISSRVQFG VKGAALPLLLVILMYLGFAATGTVLSGQAINLMFGFSAPAAGIAIFGALTALVAVVGY RLIHTVGRISTVVGILGFGYLAWQLFHQYDVASAFGQKPFTWASFLTAMALSAGWQMT FAPYVADYSRYLPSKTSTAATFWTTFGGSVISAQLAMTFGALVAALGANFIKNQVGFL GELAGPLAVVIYLVIVTGKLTVNCLNAYGGVMTMLTTVSAFNDRKQFSPATRLAYILG FVLVTVLVALLASSNFLSTFKNFVLLLLTVFVPWSAVNLVDYYLISKEKVDIPALYDS RGRYGAYNGVALFSYILGIVVQIPFINQAMYEGPLAKAMGGADISWIVSLVVTALVYY PLAARTMDVPRQMIYPAAEPAAGAPDTLPGYDGSLAHTSHAG" misc_feature 1793348..1794652 /locus_tag="Alide2_1692" /note="Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]; Region: CodB; COG1457" /db_xref="CDD:31646" misc_feature 1793357..1794613 /locus_tag="Alide2_1692" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" gene 1794816..1796537 /locus_tag="Alide2_1693" /db_xref="GeneID:10482731" CDS 1794816..1796537 /locus_tag="Alide2_1693" /EC_number="4.2.1.49" /inference="protein motif:TFAM:TIGR01228" /note="TIGRFAM: Urocanase; KEGG: dac:Daci_0150 urocanate hydratase; PFAM: Urocanase" /codon_start=1 /transl_table=11 /product="urocanate hydratase" /protein_id="YP_004387599.1" /db_xref="GI:330824296" /db_xref="GO:0016153" /db_xref="InterPro:IPR000193" /db_xref="GeneID:10482731" /translation="MNANDAILNAARQDPRHDASRVIRAPRGSELACKNWLAEAAYRM LQNNLDPDVAENPKALVVYGGIGRAARNWECFDEILAQLKKLEADESLLIQSGKPVGV FKTHPDAPRVLLANSNLVPKWANWEHFNELDQKGLFMYGQMTAGSWIYIGSQGIVQGT FETFVEAGRQHYNNDLTGKWILTAGLGGMGGAQPLAATLAGACSLTIECKQSSIDFRL RTRYVDKQARDIDDALALIEYHTGKGEAVSIALLGNAAEVLPELVKRAKAGGPRPDIV TDQTSAHDLVNGYLPTGWTVEQWNAAAADPGQHPTLRKAAAQSCAVHVQAMLDFQAMG IPTVDYGNNIRQVAFDEGVQRAFDFPGFVPAYIRPLFCEGKGPFRWVALSGDPEDIYK TDAKIKELFPENRHTHRWLDMARERISFQGLPARICWLGLGERHKAALAFNEMVKSGE LKAPIVIGRDHLDCGSVASPNRETEAMKDGTDAVSDWPLLNALLNTAGGATWVSLHHG GGVGMGYSQHAGVVIVADGTDAAAQRLSRVLWNDPATGVMRHADAGYESAVACAKRNG LNLPMVR" misc_feature 1794855..1796534 /locus_tag="Alide2_1693" /note="urocanate hydratase; Provisional; Region: PRK05414" /db_xref="CDD:180062" misc_feature 1794876..1796528 /locus_tag="Alide2_1693" /note="urocanate hydratase; Region: hutU; TIGR01228" /db_xref="CDD:130295" gene 1796626..1797405 /locus_tag="Alide2_1694" /db_xref="GeneID:10482732" CDS 1796626..1797405 /locus_tag="Alide2_1694" /inference="protein motif:PFAM:PF01614" /note="KEGG: pol:Bpro_1041 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004387600.1" /db_xref="GI:330824297" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10482732" /translation="MATACFDTAAMSKSASSAAVPTADRVLQVLAVLARQGKTLSAAE LMEHTGLARSTLYRQLARLKRWGFVLESDGHYAPGPLSLQLALGFDLASHLVRLARPG MLELAQQSQESVGLIVAVNDQAICLDMVESQQSLRCSFEKGRSVPLRAGASAKCVLAH LPEAARAAVLDSLWGPGTPARQAAQDELDAIRQAGFAVSAGAVDPGVWGCSVPLFGAS RQAVGAITLMAPILRSQGHEEALIRMTVVAAARISRQLVLH" misc_feature 1796683..1796946 /locus_tag="Alide2_1694" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1796686..1797393 /locus_tag="Alide2_1694" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 1797052..1797390 /locus_tag="Alide2_1694" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 1797450..1798205 /locus_tag="Alide2_1695" /db_xref="GeneID:10482733" CDS 1797450..1798205 /locus_tag="Alide2_1695" /inference="protein motif:PFAM:PF00497" /note="KEGG: pol:Bpro_1040 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor" /codon_start=1 /transl_table=11 /product="ABC transporter periplasmic subunit" /protein_id="YP_004387601.1" /db_xref="GI:330824298" /db_xref="GO:0005215" /db_xref="InterPro:IPR001320" /db_xref="InterPro:IPR001638" /db_xref="GeneID:10482733" /translation="MTTIRRNLLLAGMAALALGAAGAHAQDNVLRVGTDATFPPMEFV ENGKRTGFDIELVEAIAKAMGKQVEWVDIDFKGLIPGLISRRFDMAVSAIYITDERRK VVDFTEPYYAGGLVAMVKEGNTSIRKLSDLDGKRVSVQVGTKSVGFLTQNYPKVQRIE VEKNQEMFNLVDIGRADAAVTGKPAAYQYVRTRPGLRVLEEQLTTEEYGMALRKDTPE LTKAVNAALARLKADGTYAAIVKKWFSAGAAAK" sig_peptide 1797450..1797527 /locus_tag="Alide2_1695" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 26" misc_feature 1797537..1798181 /locus_tag="Alide2_1695" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature 1797537..1798181 /locus_tag="Alide2_1695" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature order(1797561..1797563,1797672..1797674,1797747..1797749, 1797879..1797881,1797993..1797995) /locus_tag="Alide2_1695" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1797942..1797944,1797954..1797956,1797972..1797974) /locus_tag="Alide2_1695" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature order(1798065..1798067,1798068..1798076) /locus_tag="Alide2_1695" /note="hinge residues; other site" /db_xref="CDD:29040" gene 1798220..1798888 /locus_tag="Alide2_1696" /db_xref="GeneID:10482734" CDS 1798220..1798888 /locus_tag="Alide2_1696" /inference="protein motif:TFAM:TIGR01726" /note="KEGG: pol:Bpro_1039 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="polar amino acid ABC transporter inner membrane subunit" /protein_id="YP_004387602.1" /db_xref="GI:330824299" /db_xref="GO:0005215" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR010065" /db_xref="GeneID:10482734" /translation="MELDFSPVWAGWLQLLQGAVVTVQVTAASLLLGCVMGLLVGIGR LNPRNRIVYGLCTAYVAAIRGTPLLVQLFLLFFGLPQLGVLLPAFVCGVIGLGIYSGA YVSEIVRGAIQSIDKGQMEAARSIGLSSGQAMRSVVLPQAVVRMIPPLGNEFIALIKN SALVSLLTIHDLMHEGQKIISVSYRSLEVYLAIAVVYFVLTGATTLVLRHMELRLRAG GMVQ" misc_feature <1798361..1798549 /locus_tag="Alide2_1696" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" misc_feature <1798484..1798837 /locus_tag="Alide2_1696" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1798496..1798498,1798712..1798714,1798748..1798750, 1798757..1798759,1798787..1798789) /locus_tag="Alide2_1696" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1798511..1798516,1798520..1798522,1798526..1798528, 1798535..1798540,1798544..1798546,1798556..1798561, 1798568..1798570,1798619..1798621,1798661..1798666, 1798673..1798675,1798694..1798705,1798712..1798717, 1798754..1798759,1798787..1798792,1798799..1798804, 1798808..1798813,1798820..1798825,1798832..1798837) /locus_tag="Alide2_1696" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1798571..1798609,1798625..1798630,1798640..1798642) /locus_tag="Alide2_1696" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1798885..1799667 /locus_tag="Alide2_1697" /db_xref="GeneID:10482735" CDS 1798885..1799667 /locus_tag="Alide2_1697" /EC_number="3.6.3.30" /inference="protein motif:PRIAM:3.6.3.30" /note="PFAM: ABC transporter-like; KEGG: pol:Bpro_1038 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Fe(3+)-transporting ATPase" /protein_id="YP_004387603.1" /db_xref="GI:330824300" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482735" /translation="MTMQAGSQGAEPIVRIRGLRKAYGDHVVLSGIDFDVQPSQVVVV IGPSGSGKSTFLRCCNGLEQPQGGRIDICGRTLVDDGRMLPDGDLNALREEVGMVFQS FNLFPHLSVIDNVTLGPRKLHKLPRAEAEAEARVLLEKVGLAHKAEAMPASLSGGQKQ RVAIARALAMKPRVMLFDEPTSALDPELVGEVLQVMKVLAREGMTMMVVTHEMDFARE VGDVVVVMDGGGIIESGPPATIFTNPAQERTRSFLQAVLTRA" misc_feature 1798918..1799655 /locus_tag="Alide2_1697" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature 1798924..1799538 /locus_tag="Alide2_1697" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 1799020..1799043 /locus_tag="Alide2_1697" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(1799029..1799034,1799038..1799046,1799185..1799187, 1799416..1799421,1799515..1799517) /locus_tag="Alide2_1697" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 1799176..1799187 /locus_tag="Alide2_1697" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 1799344..1799373 /locus_tag="Alide2_1697" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 1799404..1799421 /locus_tag="Alide2_1697" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 1799428..1799439 /locus_tag="Alide2_1697" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 1799503..1799523 /locus_tag="Alide2_1697" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene 1799673..1800275 /locus_tag="Alide2_1698" /db_xref="GeneID:10482736" CDS 1799673..1800275 /locus_tag="Alide2_1698" /inference="protein motif:PFAM:PF05962" /note="PFAM: Uncharacterised protein family HutD; KEGG: aav:Aave_2962 hypothetical protein" /codon_start=1 /transl_table=11 /product="HutD family protein" /protein_id="YP_004387604.1" /db_xref="GI:330824301" /db_xref="InterPro:IPR010282" /db_xref="GeneID:10482736" /translation="MQRFDLAAVPPTPWKNGGGHTRELACWPPGAGMDGFEWRVSVAT IAAPGPFSAFAGVDRQIMLLDGDGVHLSAPGVGLDHRLDRRWRPFAFPGDVAVGCRLL GGSSTDFNLMLRRGRWRGSVEVARDARVPGSTPAGLCMVLAGRWSLGGDMLEPGQGLW WSAAGAGSALAPHARQGGEAPVLAWVALMPWIQEKNASSA" misc_feature 1799682..1800143 /locus_tag="Alide2_1698" /note="HutD; Region: HutD; cl01532" /db_xref="CDD:186446" gene 1800601..1801839 /locus_tag="Alide2_1699" /db_xref="GeneID:10482737" CDS 1800601..1801839 /locus_tag="Alide2_1699" /EC_number="3.5.2.7" /inference="protein motif:TFAM:TIGR01224" /note="TIGRFAM: Imidazolonepropionase; KEGG: pol:Bpro_1035 imidazolonepropionase; PFAM: Amidohydrolase 1" /codon_start=1 /transl_table=11 /product="imidazolonepropionase" /protein_id="YP_004387605.1" /db_xref="GI:330824302" /db_xref="GO:0016887" /db_xref="InterPro:IPR005920" /db_xref="InterPro:IPR006680" /db_xref="GeneID:10482737" /translation="MSIHPCADGVWEGLRLAPGLARADVAVGAGERASLVVQGGVLRW VGPSAALPAGYARLARRDGGGLLATPGLVDCHTHLVYGGQRANEFAMRLAGASYEEVA RAGGGIVSSVRATREASEDELFALALPRLSALLAEGVCAIEIKSGYGLTLEHERKQLR VARRLGQALGVTVRTTFLGAHALPPEYAGRSQDYTDAVCDEMLPALAAEGLVDAVDAF CERIAFTLAETRQVFQAAQRLGIPVKLHAGQLSDMGGAQLAARHGALSCDHIEHLSQE GIDAMKAAGTVAVLLPGAYYTLRDTHLPPIAQLRAAGVPMAVSTDHNPGTSPALSLLL MANMACTLFRLTVPEALAGITTHAARALGLSDTHGLIAAGRPANFVLWSVGEAAELAY WLGHNPARTIVRQGRIVKGA" misc_feature 1800622..1801830 /locus_tag="Alide2_1699" /note="Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]; Region: HutI; COG1228" /db_xref="CDD:31421" misc_feature 1800703..1801818 /locus_tag="Alide2_1699" /note="Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria...; Region: Imidazolone-5PH; cd01296" /db_xref="CDD:30039" misc_feature order(1800826..1800828,1800832..1800834,1801336..1801338, 1801345..1801347,1801405..1801407,1801561..1801563) /locus_tag="Alide2_1699" /note="active site" /db_xref="CDD:30039" gene 1801844..1803277 /locus_tag="Alide2_1700" /db_xref="GeneID:10482738" CDS 1801844..1803277 /locus_tag="Alide2_1700" /inference="protein motif:TFAM:TIGR02022" /note="KEGG: dac:Daci_0155 N-formimino-L-glutamate deiminase; TIGRFAM: Formiminoglutamate deiminase; PFAM: Amidohydrolase 1" /codon_start=1 /transl_table=11 /product="formiminoglutamate deiminase" /protein_id="YP_004387606.1" /db_xref="GI:330824303" /db_xref="InterPro:IPR006680" /db_xref="InterPro:IPR010252" /db_xref="GeneID:10482738" /translation="MDKTQTSARPEVPHLPARDAGALFAEHALLPGGWARDVLLRWDA GGRLVCAAPGSDAGDAPRAPGPVVPGMPNLHSHAFQRAFAGLTEYRAQAQDSFWSWRD LMYRFAARISPESLQAIATWLYVEMLEAGYTSVCEFHYVHHDQGGRPYADDATLSLAL LRAARAAGIGITLLPVLYQASGFGGRPPRADQARFIRSTDNMLSLLERLAPATRAQEA VLGLAPHSLRAVPPDSLRAAVQGLTALDARAPIHIHVAEQRQEVDDCVAWSGQRPVQW LLDHASVDARWCLVHATHMTPEEYAAAARTGAVAGICPTTEANLGDGIFDMPLWLRHG GRWGVGSDSHACVNAAEELLMLEYSQRLSLRQRNVLAGSGQPQVGTALWLAAVQGGAQ AAGRAVAGIAEGQQADFAVLDPRHVALAGLPAEAMLSAHVFASSRGTALHGVWTGGVQ RVAAGRHALHERAAQEFVAARAAIIAA" misc_feature 1801907..1803223 /locus_tag="Alide2_1700" /note="N-formimino-L-glutamate deiminase; Validated; Region: PRK09229" /db_xref="CDD:181712" misc_feature 1801925..1803190 /locus_tag="Alide2_1700" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature order(1802066..1802068,1802072..1802074,1802603..1802605, 1802714..1802716,1802867..1802869) /locus_tag="Alide2_1700" /note="active site" /db_xref="CDD:30035" gene 1803306..1804127 /locus_tag="Alide2_1701" /db_xref="GeneID:10482739" CDS 1803306..1804127 /locus_tag="Alide2_1701" /inference="protein motif:TFAM:TIGR02017" /note="KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate deformylase; PFAM: N-formylglutamate amidohydrolase" /codon_start=1 /transl_table=11 /product="N-formylglutamate amidohydrolase" /protein_id="YP_004387607.1" /db_xref="GI:330824304" /db_xref="InterPro:IPR007709" /db_xref="InterPro:IPR010247" /db_xref="GeneID:10482739" /translation="MPDTTHPLFTFHQGTAPLLISMPHVGTYLPPAIAARLTPEARQV PDTDWHLERLYGFARELGASILVPTHSRYVVDLNRPPDGASLYPGQSVTGLCPVDTFD DTPLYADPADAPGEAEVAARRTAYWEPYHAQLRAGLERMRAEHGVAVLWDAHSIRSVL PRFFEGRLTDLNLGTGKGTSCDPALAEELLGIAKAATGYTAVLNGRFTGGYITRHYGE PARNIHAVQLEMTQCSYMQEALPFDYLPEVAARVQPHLRRMVEAALAFALSRRGG" misc_feature 1803324..1804106 /locus_tag="Alide2_1701" /note="N-formylglutamate amidohydrolase; Region: FGase; cl01522" /db_xref="CDD:194156" gene complement(1804124..1804987) /locus_tag="Alide2_1702" /db_xref="GeneID:10482740" CDS complement(1804124..1804987) /locus_tag="Alide2_1702" /EC_number="5.1.1.3" /inference="protein motif:TFAM:TIGR00067" /note="TIGRFAM: Glutamate racemase; KEGG: ajs:Ajs_2867 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase" /codon_start=1 /transl_table=11 /product="glutamate racemase" /protein_id="YP_004387608.1" /db_xref="GI:330824305" /db_xref="GO:0008881" /db_xref="InterPro:IPR004391" /db_xref="InterPro:IPR015942" /db_xref="GeneID:10482740" /translation="MTEPLAARPIGVFDSGIGGLSVLQALRHELPHEDFVYLADSGNA PYGDAKGEAFVQQRTLAIARWLRAQHGIKALVVACNTATAAAVERLRATLPDLPAIGV EPALKPAAARSQTHHVGVLATRGTVSSARFARLHDEHGARTRFAVQACDGLARAIEQS TEEPLPATESATKIRALCARYTGALGRFGLKTGDIDTLVLGCTHYVFAKDALRDLVGP DVQILDTGAAVARQTRRILAQAGALAHERPGAPPGGIRLYTTGQLGALQAAAGRWLQL PAQCCAALPDV" misc_feature complement(1804208..1804966) /locus_tag="Alide2_1702" /note="Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518" /db_xref="CDD:193849" gene complement(1805028..1805651) /locus_tag="Alide2_1703" /db_xref="GeneID:10482741" CDS complement(1805028..1805651) /locus_tag="Alide2_1703" /inference="protein motif:PFAM:PF06080" /note="PFAM: Protein of unknown function DUF938; KEGG: dia:Dtpsy_2352 protein of unknown function DUF938" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387609.1" /db_xref="GI:330824306" /db_xref="InterPro:IPR010342" /db_xref="GeneID:10482741" /translation="MTAIQPPGLPFSQACENNQAPILAVLAQAFADRRHVLEIGSGTG QHGVYFAPRLPHLVWQTSDLAENHAGIRAWHARHPAPNLRPPLLLDLQGSDWPPGAFD AVFTSNTTHIVAWPLVQRLFALSGAHLPPGGVLAVYGPFNYGGGFTSDSNRAFDAWLR ARDPASGIRHFEDIAALAARHGLAPERDHAMPANNRLLVLRRGGAQA" misc_feature complement(1805046..1805624) /locus_tag="Alide2_1703" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1805852..1806655) /locus_tag="Alide2_1704" /db_xref="GeneID:10482742" CDS complement(1805852..1806655) /locus_tag="Alide2_1704" /EC_number="4.1.3.39" /inference="protein motif:PRIAM:4.1.3.39" /note="KEGG: aav:Aave_2080 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: Aldehyde-lyase domain" /codon_start=1 /transl_table=11 /product="4-hydroxy-2-oxovalerate aldolase" /protein_id="YP_004387610.1" /db_xref="GI:330824307" /db_xref="InterPro:IPR005000" /db_xref="GeneID:10482742" /translation="MPAHNPFKTALANGQAQIGLWLSMADPYLAEAAATTGYDWLLID GEHAPNDLRGTLAALQTMAPYPGQPVVRVVEGSTALIKQMLDIGAKSLLVPMVDTASQ ARAIVAATQYPPRGVRGVGSAVGRASQWSSRADYLAVADDEVCLLVQAETATALRNLE AICAVDGVHGVFIGPADLAASMGHRGNPGHPEVQAAIEGAMRTIVASGKAAGTLTSDP ALARRYLDLGCTFVAVGVDVLLFTQAARKRRAELGGQPVANAAPPSAAY" misc_feature complement(1805894..1806655) /locus_tag="Alide2_1704" /note="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]; Region: HpcH; COG3836" /db_xref="CDD:33628" misc_feature complement(1805897..1806643) /locus_tag="Alide2_1704" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(1806662..1808131) /locus_tag="Alide2_1705" /db_xref="GeneID:10482743" CDS complement(1806662..1808131) /locus_tag="Alide2_1705" /EC_number="1.2.1.24" /inference="protein motif:TFAM:TIGR01780" /note="TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: dac:Daci_2346 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain" /codon_start=1 /transl_table=11 /product="succinic semialdehyde dehydrogenase" /protein_id="YP_004387611.1" /db_xref="GI:330824308" /db_xref="GO:0016153" /db_xref="InterPro:IPR010102" /db_xref="InterPro:IPR015590" /db_xref="GeneID:10482743" /translation="MPLTLSRPDLIRSANFIAGAWTSTPAARLAVTDPATGAAITDVP DSGAAEARAALDAAHAAFPAWRKVPAKQRAAIIKLWHDLVMAHQDDLGKLISREQGKP LAEGKGEVAYAASYIEWFGEEATRMNGEVIPAPVPGRRMFALREPVGVVAAITPWNFP AAMIARKIAPALAAGCTVVCKPAEDTPLTSLALVLLAHEAGVPPGVLNIVTASREKTP EVVDVWLDDARVRKITFTGSTPVGKHLARRSADTLKKLSLELGGNAPFIVFDDADVDA AVEGFMAAKFRNGGQTCVCPNRVFVHRAVFDSFAQKLAARVGALKVGPASDPASQIGP MINGRAVEKIERHVQDAIAKGARVLTGGKRLPELGPTYYAPTVLTGADPTMACACEET FGPVAPLTVFDDEAEVVQAANDTPFGLAAYFYSQDVRRIWRVADALESGIVGINEGAI SAEAAPFGGVKESGYGREGSTHGLDDYLHTKYVCQGQLD" misc_feature complement(1806683..1808071) /locus_tag="Alide2_1705" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(1806677..1808041) /locus_tag="Alide2_1705" /note="Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like; Region: ALDH_F5_SSADH_GabD; cd07103" /db_xref="CDD:143421" misc_feature complement(order(1806677..1806697,1806731..1806733, 1806746..1806748,1806764..1806769,1806776..1806778, 1806794..1806814,1806818..1806820,1806827..1806829, 1806833..1806835,1806845..1806850,1806854..1806856, 1807061..1807063,1807199..1807201,1807211..1807213, 1807382..1807384,1807391..1807393,1807403..1807405, 1807439..1807441,1807694..1807696,1807709..1807717, 1807733..1807759,1807763..1807768,1807775..1807777, 1807898..1807900,1807925..1807927)) /locus_tag="Alide2_1705" /note="tetramerization interface [polypeptide binding]; other site" /db_xref="CDD:143421" misc_feature complement(order(1806761..1806763,1806875..1806877, 1806953..1806955,1806959..1806961,1807253..1807255, 1807349..1807357,1807397..1807402,1807409..1807411, 1807418..1807429,1807580..1807585,1807589..1807591, 1807634..1807636,1807658..1807672)) /locus_tag="Alide2_1705" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143421" misc_feature complement(order(1807253..1807255,1807262..1807264, 1807355..1807357,1807658..1807660)) /locus_tag="Alide2_1705" /note="catalytic residues [active]" /db_xref="CDD:143421" gene complement(1808198..1809721) /locus_tag="Alide2_1706" /db_xref="GeneID:10482744" CDS complement(1808198..1809721) /locus_tag="Alide2_1706" /EC_number="4.2.1.42" /inference="protein motif:PRIAM:4.2.1.42" /note="PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; KEGG: ctt:CtCNB1_3469 outer membrane protein precursor; SMART: SAF domain" /codon_start=1 /transl_table=11 /product="galactarate dehydratase" /protein_id="YP_004387612.1" /db_xref="GI:330824309" /db_xref="InterPro:IPR007392" /db_xref="InterPro:IPR013974" /db_xref="GeneID:10482744" /translation="MTMGPLLHLHPNDNVFVAKTALALGQEIPELGVRTRAQVPAGHK IAARRIAEGEQVKKYDTVIGVATRDLEPGDYVHSHNLKIVDYYRDPAFGADVRPVQYV PEDRRATFKGFVRADGRVGTRNFIGILSSVNCSATAIRHIAAHFTPERLAAYPHVDGV VAFAQTSGCGMSSPSEHFDVLRRTLAGYARHPNLAGALIVGLGCERNQVDALVQSQGL QPGQLLRTFVMQDMGGTRATIAAGIAAIEEMLPIANQARRQTVSASHLKIGLECGGSD GFSGITANPALGAAMDILVRHGGTAILSETPEIHGVEFMLTRRAVSPEVGQKLLDRLA WWEKYAAGQNAQFNGVVGHGNQAGGLANIFEKSLGSAMKGGTTPLQAVYEYAEPITQN GFVFMDSPGYDPVAATGQIASGANMICFTTGRGSMFGSKPAPTVKLATNTPMYLRLQE DMDINCGLIVDGECTVPEMGERIFAQILRHASGEPTKSELLGLGDNEFVPWHLGIVS" misc_feature complement(1808237..1809703) /locus_tag="Alide2_1706" /note="galactarate dehydratase; Region: galactar-dH20; TIGR03248" /db_xref="CDD:188300" misc_feature complement(1809476..1809685) /locus_tag="Alide2_1706" /note="SAF domain; Region: SAF; cl00555" /db_xref="CDD:193866" misc_feature complement(1808204..1809406) /locus_tag="Alide2_1706" /note="SAF domain; Region: SAF; cl00555" /db_xref="CDD:193866" gene complement(1809718..1810707) /locus_tag="Alide2_1707" /db_xref="GeneID:10482745" CDS complement(1809718..1810707) /locus_tag="Alide2_1707" /inference="similar to AA sequence:KEGG:CtCNB1_3468" /note="KEGG: ctt:CtCNB1_3468 TctC" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387613.1" /db_xref="GI:330824310" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482745" /translation="MQTPRSERRQFIFGALGAAALATGSTRLFAQEWPARPITFICPW PAGGTADQSMRALCTVAARVLGQAIAVENRAGASGMIGAKALASAKADGYTIGQIPIS VTRFSQIGTLAADPRKDFTYIARTSGQTFGIAVPASSPYKTLQELVAAAKARPGQVTY AHAGVGGATHVGMEEFAMAAGVQFNHVPYKGGAEALQGVLGGHVDALADSSSWAPHVE AGKLRLLATWGEQRTPRFKDVPTLKELGYNVVVDAPNGIGAPKGMDPAILARLRDAFR QAVASHEFKAVTDRIDAPVMYLDGPDYEKYVNAVYQKETVLIDKLKLRELMKS" sig_peptide complement(1810615..1810707) /locus_tag="Alide2_1707" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.998 at residue 31" misc_feature complement(1809739..1810545) /locus_tag="Alide2_1707" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1810807..1811769 /locus_tag="Alide2_1708" /db_xref="GeneID:10482746" CDS 1810807..1811769 /locus_tag="Alide2_1708" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_2084 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387614.1" /db_xref="GI:330824311" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482746" /translation="MKLPATKGPAMAQIDRVLRSNLKLRHLQMLVALDQFRHLGRAAE FLSVTQPAVSKTLAEIESMFGLPLFERSTRGTEPTAAGASVVRFARSVLAGYDRTRDE IAAEASGASGRTSVGAMVSATPVLLAQAVQRLKARSHRTTVLIEEGDLARLLPKLRLG ELDLFVGRLEPGYASPDLETEPLYDDPMVAVARPGHALARRRAVQWADLAGQPCVMPP PWASLRVKLEQQFFAHGLHPPADIVESASFLSQITFLHQRGAVAFMARTVARHFAQQG MLAVLRLPVQVALPPVGLITLRGQRVTPVTGLLVESLREVGKTA" misc_feature 1810864..1811757 /locus_tag="Alide2_1708" /note="pca operon transcription factor PcaQ; Region: TF_pcaQ; TIGR02424" /db_xref="CDD:162852" misc_feature 1810876..1811052 /locus_tag="Alide2_1708" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1811149..1811745 /locus_tag="Alide2_1708" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(1811188..1811193,1811197..1811202,1811209..1811211, 1811221..1811223,1811227..1811247,1811530..1811547, 1811563..1811568,1811572..1811577) /locus_tag="Alide2_1708" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(1811771..1812790) /locus_tag="Alide2_1709" /db_xref="GeneID:10482747" CDS complement(1811771..1812790) /locus_tag="Alide2_1709" /inference="protein motif:PFAM:PF01734" /note="PFAM: Patatin/Phospholipase A2-related; KEGG: dac:Daci_3706 patatin" /codon_start=1 /transl_table=11 /product="Patatin" /protein_id="YP_004387615.1" /db_xref="GI:330824312" /db_xref="InterPro:IPR002641" /db_xref="GeneID:10482747" /translation="MRMAVLWRPLAYLGLAGLAACGSAPPGKSAAPAQAAAEPVRIGV ALGGGAAKGFAHIGVIKMLEANGLAPAVVAGTSAGSVVGALYASGMDAFELQEKAVAL DETRIRDLQLSSGGLVQGQKLEDYVNEQVRRKPLEQLAKPFVAVATRLEDGERTVFAR GNTGQAVRASSSIPGVFQPVAIGKYHYVDGGIVSPVPVDAARQLGADVVIAVDISNKA RGKAPEHLLGALGQSIAIMGQKLGQAELARADVVIRPKVLDIGPADFSQRASAIVEGE KAALAAMAQIRERIAQVQAERAQATRLAQQKALDAQREACLNNRSRLRKLAGMAGLDN SCAAP" sig_peptide complement(1812683..1812790) /locus_tag="Alide2_1709" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.867) with cleavage site probability 0.747 at residue 36" misc_feature complement(1811882..1812670) /locus_tag="Alide2_1709" /note="Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]; Region: RssA; COG1752" /db_xref="CDD:31938" misc_feature complement(1812149..1812667) /locus_tag="Alide2_1709" /note="Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1; Region: Pat_PNPLA6_PNPLA7_NTE1_like; cd07205" /db_xref="CDD:132844" misc_feature complement(order(1812224..1812226,1812560..1812562, 1812635..1812637,1812641..1812646)) /locus_tag="Alide2_1709" /note="active site" /db_xref="CDD:132844" misc_feature complement(1812554..1812568) /locus_tag="Alide2_1709" /note="nucleophile elbow; other site" /db_xref="CDD:132844" gene complement(1812962..1814053) /locus_tag="Alide2_1710" /db_xref="GeneID:10482748" CDS complement(1812962..1814053) /locus_tag="Alide2_1710" /EC_number="4.1.1.73" /inference="protein motif:TFAM:TIGR02089" /note="TIGRFAM: Tartrate dehydrogenase; KEGG: aav:Aave_2087 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase" /codon_start=1 /transl_table=11 /product="tartrate dehydrogenase" /protein_id="YP_004387616.1" /db_xref="GI:330824313" /db_xref="GO:0009027" /db_xref="GO:0051287" /db_xref="InterPro:IPR001804" /db_xref="InterPro:IPR011829" /db_xref="GeneID:10482748" /translation="MQQRTYKIAVLPGDGIGKEVMPEGLRAVQAAAQRFGLALDIHHF EWASCDYYAQHGQMMPDDWKAQLQDMDAIFFGAVGWPATVPDHVSLWGSLLKFRREFD QYINLRPVRLFEGVPCPLAGRKPGDIDYYVVRENTEGEYTSLGGIMYEGTDREIVIQE SVYSRKGAERLLKFAFDLAQSRPRKHVTLATKSNGIAISMPWWDQRAEEVARQYPGVT LDKQHIDILTARFVLQPGRFDVVAATNLFGDILSDLGPATTGTIGLAPSANLNPERGF PSLFEPVHGSAPDIYGKNIANPIAMIWSGALMLDFLAQGQGAGRQAHDAIVAAIEEVI RSGPRTPDLGGQASTQQVGEAIAALIAKG" misc_feature complement(1812974..1814044) /locus_tag="Alide2_1710" /note="Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445" /db_xref="CDD:193821" gene 1814094..1815050 /locus_tag="Alide2_1711" /db_xref="GeneID:10482749" CDS 1814094..1815050 /locus_tag="Alide2_1711" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2361 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387617.1" /db_xref="GI:330824314" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482749" /translation="MTGSIQCALPWFHHSRTVQKIPPTDDLRVFCTVVRKAGFAAAAQ ELAASPAYVSKRIRLLEQELGVPLLHRTTRRVAVTDQGERVFHWAQRILDDMDQLLQE VAVTRREPRGLLRVSSSFGFGRNVVAPMLSRLVQRHPGLQVRLEVFDRLVDVAGEGFD LDVRVGDEIAPHLIARRLADNHRVLCAAPGYLARRGTPRSPAELPAHDCLVIKERDHP FGVWRLRAGAVEQSVKVTGPLSANNGEMVVQWAVDGCGIALRSLWDVGAHLEAGRLVQ VLPEWRQEANIWAVYPTPLERSAKVRVCVEFLQEYFGRQRPW" misc_feature 1814157..1815026 /locus_tag="Alide2_1711" /note="transcriptional activator TtdR; Provisional; Region: PRK09801" /db_xref="CDD:182085" misc_feature 1814166..1814342 /locus_tag="Alide2_1711" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1814427..1815017 /locus_tag="Alide2_1711" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479" /db_xref="CDD:176168" misc_feature order(1814457..1814459,1814469..1814471,1814586..1814588, 1814628..1814630,1814634..1814636,1814823..1814825, 1814874..1814876,1814952..1814954) /locus_tag="Alide2_1711" /note="putative effector binding pocket; other site" /db_xref="CDD:176168" misc_feature order(1814460..1814465,1814475..1814480,1814484..1814489, 1814496..1814498,1814508..1814510,1814514..1814534, 1814715..1814717,1814805..1814819,1814838..1814843, 1814850..1814852) /locus_tag="Alide2_1711" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176168" gene complement(1815067..1816068) /locus_tag="Alide2_1712" /db_xref="GeneID:10482750" CDS complement(1815067..1816068) /locus_tag="Alide2_1712" /inference="similar to AA sequence:KEGG:Dtpsy_0973" /note="KEGG: dia:Dtpsy_0973 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387618.1" /db_xref="GI:330824315" /db_xref="GeneID:10482750" /translation="MNTEEIRAVLTICLLAAYADGDKHDREREQIRQVAQGLAQDQQV NLPGLYQEVLMRRIQLADVVPRLSSSEARQLAYEMAVCVCEADGQTSAAEQAFLARLR EALGQAPAEFAAQADALATAPLGAPSAALPEAAAAGQAAPHPAAVDALPGTAAQRRPG TLPAAEMDRKILNAAMLNGAIELLPENLSTLAIIPLQMRLVYQIGQSYGYELDSGHIK DLLATLGVGLTSQYLEQAGRKLLGGLLGKVGGGLLGGLGRQAVSSGMSFAATYALGHV ANQYYAGGRTLGTQMLRDAYQHVMADGRQLQAQYLPQMQEMARGLNTARIVQMVRGG" misc_feature complement(1815763..1816047) /locus_tag="Alide2_1712" /note="tellurium resistance terB-like protein; Region: terB_like; cd07177" /db_xref="CDD:143581" misc_feature complement(order(1815787..1815789,1815808..1815810, 1815817..1815819,1815988..1815990,1816009..1816011)) /locus_tag="Alide2_1712" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143581" misc_feature complement(1815133..1815573) /locus_tag="Alide2_1712" /note="Domain of unknown function (DUF697); Region: DUF697; cl12064" /db_xref="CDD:159724" gene complement(1816137..1816277) /locus_tag="Alide2_1713" /db_xref="GeneID:10482751" CDS complement(1816137..1816277) /locus_tag="Alide2_1713" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387619.1" /db_xref="GI:330824316" /db_xref="GeneID:10482751" /translation="MEERLELLKEMAENLAWPALGLLEPQAEPLARETVDLEVDRVIL LL" gene complement(1816411..1816548) /locus_tag="Alide2_1714" /db_xref="GeneID:10482752" CDS complement(1816411..1816548) /locus_tag="Alide2_1714" /inference="similar to AA sequence:KEGG:ABBFA_001155" /note="KEGG: abb:ABBFA_001155 transcriptional regulatory protein QseB" /codon_start=1 /transl_table=11 /product="transcriptional regulatory protein QseB" /protein_id="YP_004387620.1" /db_xref="GI:330824317" /db_xref="GeneID:10482752" /translation="MRILLIEDDSSLGSSLQSWLQMDGYAVDWLRRGDQAAAALATHA Y" gene 1816723..1817058 /locus_tag="Alide2_1715" /db_xref="GeneID:10482753" CDS 1816723..1817058 /locus_tag="Alide2_1715" /inference="protein motif:PFAM:PF00216" /note="KEGG: pol:Bpro_4958 histone-like DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein" /codon_start=1 /transl_table=11 /product="histone family protein DNA-binding protein" /protein_id="YP_004387621.1" /db_xref="GI:330824318" /db_xref="GO:0003677" /db_xref="InterPro:IPR000119" /db_xref="GeneID:10482753" /translation="MDRNPQTHTFDMNRAQLVEILASKNDLSKTAANAVLETLTETIQ TAVKKGDTVQLVGFGTFKSAKRAARTGKNPATGAALKIPASTVPKFVPGAKFKAVVDP KAAKRKAGK" misc_feature 1816759..1817016 /locus_tag="Alide2_1715" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature order(1816759..1816767,1816831..1816833,1816876..1816878, 1816882..1816884,1816888..1816893,1816900..1816902, 1816912..1816914,1816918..1816923,1816927..1816929, 1816936..1816947,1816975..1816977,1816987..1816989, 1816993..1816995,1817002..1817004) /locus_tag="Alide2_1715" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" misc_feature order(1816759..1816764,1816771..1816773,1816780..1816782, 1816792..1816794,1816834..1816836,1816843..1816848, 1816855..1816860,1816870..1816884,1816891..1816896, 1816909..1816911,1816975..1816980,1816990..1816992, 1816996..1816998) /locus_tag="Alide2_1715" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" gene 1817156..1817638 /locus_tag="Alide2_1716" /db_xref="GeneID:10482754" CDS 1817156..1817638 /locus_tag="Alide2_1716" /inference="protein motif:PFAM:PF01381" /note="KEGG: pol:Bpro_5021 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004387622.1" /db_xref="GI:330824319" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10482754" /translation="MTAFSESFRSEVARIARKENKEEMASLRKAATNQRAEIAALKRD IKALAGQVRSLAKALERVQVEAERQRPPQRSEGSPAQEQAPAKQGGRAFAFSHEALVA KRQAFHMTQKEMARLLHVSPLSVYKWETGRVTPREAQLVRVREVLKMGLREARRQIAE " misc_feature <1817186..>1817428 /locus_tag="Alide2_1716" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:162739" misc_feature 1817447..1817614 /locus_tag="Alide2_1716" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(1817456..1817458,1817468..1817470,1817543..1817545) /locus_tag="Alide2_1716" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(1817465..1817467,1817540..1817542) /locus_tag="Alide2_1716" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(1817486..1817491,1817522..1817524,1817531..1817533, 1817543..1817548) /locus_tag="Alide2_1716" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene complement(1817975..1818871) /locus_tag="Alide2_1717" /db_xref="GeneID:10482755" CDS complement(1817975..1818871) /locus_tag="Alide2_1717" /inference="protein motif:PFAM:PF03466" /note="KEGG: tmz:Tmz1t_1027 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387623.1" /db_xref="GI:330824320" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482755" /translation="MEPRLLRYFVAVAEELHLARAAERLGIEQSPVSRAMRDLESQLG VQLFDRSTRLTRLTWAGQVFLGECRRVMATVEQAVKSAKAAAQGYQGHLRIAICDGLA QPRIATLLARSREEEPEMEIRVFELPFAQQLKTLHDDLLDIGFALSNAVHDGLVAEPV WTDPLSVIVPARHPLLAHVQVPLAEALKFPLVLCHPESGSGCRHQIQALLQDAGTPLK LVDEVTSLGVMLTLVGAGYGIGFAIASQVQTLQRPDISIRPLAGSPPVLSTYLLRRRG EPSEPMKRFIERAKGGRDRACR" misc_feature complement(1818011..1818871) /locus_tag="Alide2_1717" /note="DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906" /db_xref="CDD:182137" misc_feature complement(1818686..1818862) /locus_tag="Alide2_1717" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1818005..1818598) /locus_tag="Alide2_1717" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature complement(order(1818110..1818112,1818167..1818172, 1818176..1818181,1818197..1818202,1818257..1818262, 1818362..1818364,1818494..1818496,1818500..1818502, 1818506..1818508,1818530..1818532,1818539..1818544, 1818548..1818553,1818560..1818562,1818581..1818583)) /locus_tag="Alide2_1717" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature complement(order(1818266..1818268,1818287..1818292, 1818431..1818433,1818578..1818580)) /locus_tag="Alide2_1717" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene complement(1818879..1819013) /locus_tag="Alide2_1718" /pseudo /db_xref="GeneID:10482756" gene complement(1819136..1819882) /locus_tag="Alide2_1719" /db_xref="GeneID:10482757" CDS complement(1819136..1819882) /locus_tag="Alide2_1719" /EC_number="1.1.1.36" /inference="protein motif:TFAM:TIGR01829" /note="SMART: Polyketide synthase/Fatty acid synthase, KR; TIGRFAM: Acetoacetyl-CoA reductase; KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="acetoacetyl-CoA reductase" /protein_id="YP_004387624.1" /db_xref="GI:330824321" /db_xref="GO:0018454" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR011283" /db_xref="InterPro:IPR020842" /db_xref="GeneID:10482757" /translation="MNTTQRTALVTGGNRGLGAAIARALHDAGHRVIVTHTPGNTTIG QWQQAQATQGYKFAAYGVDVSNYESTQELARRIHADGHRIDILVNNAGITRDATLRKL DKAGWDAVLRTNLDSMFNVTKPFIDPMVERGWGRIVNISSINGSKGQFGQTNYSAAKA GVHGFTKALAQEVARKGVTVNTVSPGYLATEMVMAVREDMRQKIIDAIPVGRLGQPDE IAALVAFIASEAAAFMTGSNVAMNGGQHMY" misc_feature complement(1819142..1819867) /locus_tag="Alide2_1719" /note="acetoacetyl-CoA reductase; Region: AcAcCoA_reduct; TIGR01829" /db_xref="CDD:188169" misc_feature complement(1819145..1819867) /locus_tag="Alide2_1719" /note="beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333" /db_xref="CDD:187594" misc_feature complement(order(1819307..1819315,1819319..1819321, 1819325..1819330,1819406..1819408,1819418..1819420, 1819457..1819465,1819544..1819546,1819604..1819615, 1819691..1819699,1819772..1819777,1819832..1819843, 1819847..1819849)) /locus_tag="Alide2_1719" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187594" misc_feature complement(order(1819145..1819147,1819151..1819189, 1819196..1819198,1819208..1819213,1819217..1819222, 1819229..1819231,1819238..1819249,1819253..1819261, 1819322..1819324,1819358..1819363,1819367..1819384, 1819388..1819393,1819400..1819405,1819412..1819417, 1819424..1819447,1819493..1819495,1819502..1819507, 1819514..1819519,1819523..1819528,1819535..1819540, 1819550..1819552,1819559..1819564,1819571..1819579, 1819583..1819594,1819670..1819672,1819799..1819801, 1819811..1819813)) /locus_tag="Alide2_1719" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187594" misc_feature complement(order(1819367..1819372,1819376..1819384, 1819388..1819393,1819400..1819405,1819412..1819417, 1819424..1819450,1819493..1819495,1819502..1819507, 1819514..1819516,1819523..1819528,1819535..1819540, 1819550..1819552,1819559..1819564,1819571..1819573, 1819577..1819579,1819583..1819591)) /locus_tag="Alide2_1719" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187594" misc_feature complement(order(1819406..1819408,1819418..1819420, 1819457..1819459,1819541..1819543)) /locus_tag="Alide2_1719" /note="active site" /db_xref="CDD:187594" gene complement(1819893..1820336) /locus_tag="Alide2_1720" /db_xref="GeneID:10482758" CDS complement(1819893..1820336) /locus_tag="Alide2_1720" /inference="similar to AA sequence:KEGG:Tmz1t_1024" /note="KEGG: tmz:Tmz1t_1024 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387625.1" /db_xref="GI:330824322" /db_xref="GeneID:10482758" /translation="MSNELPIHLYKANAELQLQITRLLQESSHHWLEVMQQLSAGSVL ETTSRIQGLQQAADWQALATLPSEVFWRLCQGRMGDAQAVGQVAAKSQTAFANGLRQA LTTWQESVSEAFGASGDAASFTQLCQRWTQPWTAPSAVPQGKTKK" gene complement(1820445..1822205) /locus_tag="Alide2_1721" /db_xref="GeneID:10482759" CDS complement(1820445..1822205) /locus_tag="Alide2_1721" /inference="protein motif:PFAM:PF07167" /note="PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; KEGG: tmz:Tmz1t_1023 poly-beta-hydroxybutyrate polymerase domain protein" /codon_start=1 /transl_table=11 /product="poly-beta-hydroxybutyrate polymerase domain-containing protein" /protein_id="YP_004387626.1" /db_xref="GI:330824323" /db_xref="GO:0008415" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR010941" /db_xref="GeneID:10482759" /translation="MNTLAIPDKPAPAPSEVVCRPDVLDTLANACRARGTGGLSPAAG LLAWYDWALHLSLSPGKQRSLIEKGLHKQRRLARYVAHAASAHGCPTCIEPLEQDRRF EAPAWQQWPFNVIHQGFLLQQQWWHNATTGVRGVSRHHENMVTFAGRQWLDMWSPSNF IWTNPEVLEAIRTSGGANLWRGAMNFLDDTQRLALDDEPAGVEGFKVGQDVAVTPGKV VFRNHLIELIQYTPTTPDVYAEPVLIVPSWIMKYYILDLSPHNSMVKYLVDQGHTVFI LSWKNPTAADRDLGLEDYRWLGVMDALDAVTAIVPERKVQAVGYCLGGTLLTIAAAAM ARDGDERLHSLTLLASETDFRESGEIALFIDDSQLAWLEAGMWDKGYLDGKQMAASFQ MLNSRDLIWSRRVREYLLGERQEFNDLMAWNADVTRMPYRMHSEYLRRLYLNNDLAEG RYQVGGRPVAIADIEVPMLIVGTVRDHVAPWPSVYKMHLLSDAELTFVLTSGGHNAGV VSEPGHPRRSYQIATRSVGARYVDPQTWRTETPLNEGSWWPAWQQWLARHSTERVSPP AMGGTQVPLGDAPGTYVAMR" misc_feature complement(1822023..1822145) /locus_tag="Alide2_1721" /note="Poly-beta-hydroxybutyrate polymerase N terminal; Region: PHBC_N; pfam12551" /db_xref="CDD:152985" misc_feature complement(1820457..1821968) /locus_tag="Alide2_1721" /note="poly(R)-hydroxyalkanoic acid synthase, class I; Region: PHA_synth_I; TIGR01838" /db_xref="CDD:130897" misc_feature complement(1821408..1821914) /locus_tag="Alide2_1721" /note="Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; Region: PhaC_N; pfam07167" /db_xref="CDD:115798" gene 1822541..1823149 /locus_tag="Alide2_1722" /db_xref="GeneID:10482760" CDS 1822541..1823149 /locus_tag="Alide2_1722" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tmz:Tmz1t_1022 transcriptional regulator, TetR family" /codon_start=1 /transl_table=11 /product="regulatory protein TetR" /protein_id="YP_004387627.1" /db_xref="GI:330824324" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10482760" /translation="MSERPQHLSAEERRAATVQAVVDLAAEQNPAEITTTAIADRMGL TQGALFRHFPTKDAILEATMTWVGERLLVRVDKAAEGAASPAAALEAMFMTHIDFVAK HPGVPRMLFGELQRSGETLAKRMVQTLLRQYEQRLRRLMEAGKAQGDLDADLDVDAAA VLFIGTIQGLVMQSLLAGKVSRIRRDAPAVFAIYLRGITHTR" misc_feature 1822574..>1822915 /locus_tag="Alide2_1722" /note="division inhibitor protein; Provisional; Region: slmA; PRK09480" /db_xref="CDD:181894" misc_feature 1822592..1822726 /locus_tag="Alide2_1722" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1823343..1823762 /locus_tag="Alide2_1723" /db_xref="GeneID:10482761" CDS 1823343..1823762 /locus_tag="Alide2_1723" /inference="similar to AA sequence:KEGG:Tmz1t_1021" /note="KEGG: tmz:Tmz1t_1021 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387628.1" /db_xref="GI:330824325" /db_xref="GeneID:10482761" /translation="MTTHPQRSIWHWLISLLAIGFGLLTLREGGAVLFVDGAARQAAG HYVPFVLWFNFLAGFAYIVAGVGLWMRRRWAAWLAIVITVATALVFLAFGVHVALGGA WERRTVVAMTLRTLVWAGIAAIAWRRSAANAPVAREH" misc_feature 1823496..>1823606 /locus_tag="Alide2_1723" /note="membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; Region: PQQ_membr_DH; TIGR03074" /db_xref="CDD:163126" gene 1823790..1824830 /locus_tag="Alide2_1724" /db_xref="GeneID:10482762" CDS 1823790..1824830 /locus_tag="Alide2_1724" /inference="protein motif:PFAM:PF00529" /note="PFAM: Secretion protein HlyD; KEGG: tmz:Tmz1t_1020 hypothetical protein" /codon_start=1 /transl_table=11 /product="secretion protein HlyD family protein" /protein_id="YP_004387629.1" /db_xref="GI:330824326" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10482762" /translation="MKTPNLLFKKTRWVVIAVVVLALGGALAFWLSRDHGQQDALRLY GNVDIREVQLAFRQPGRVMQMAFDEGDAVSAGARLAALDAQPYREALAAAQAQVQVAQ AELAKLRRGLRPQEITQAREALRQAQALATETERNFQRQSGLLASGASSQRTVDAART ARDQAAAGVEAAKAALSQASEGFRKEDIAAAEARLAAAQAAAAQATTALADTELMAPS SGTVIARVREPGSMVASQSAVYSLSLDKPVYVRAYVGESDLGRIAPGTVVRVKSDSSE KVYRGQIGFISPRAEFTPKTVETTDLRTDLVYRLRIVIDEADSDSALRQGMPVTIEVD AKAGTRIPAGER" sig_peptide 1823790..1823876 /locus_tag="Alide2_1724" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.977 at residue 29" misc_feature 1823877..1824806 /locus_tag="Alide2_1724" /note="putative efflux pump membrane fusion protein; Provisional; Region: PRK03598" /db_xref="CDD:179602" gene 1824832..1826604 /locus_tag="Alide2_1725" /db_xref="GeneID:10482763" CDS 1824832..1826604 /locus_tag="Alide2_1725" /EC_number="3.6.3.17" /inference="protein motif:PRIAM:3.6.3.17" /note="PFAM: ABC transporter-like; KEGG: tmz:Tmz1t_1019 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="monosaccharide-transporting ATPase" /protein_id="YP_004387630.1" /db_xref="GI:330824327" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482763" /translation="MQASPAIAAVPAGAGEDAAIVIEDVDKHFGDVKALRGLSARIHY GRLTGLVGPDGAGKTTLMRILTGLLVPNAGHVTLAGYDVVKDNDAIHVASGYMPQRFG LYEDLSVMENMRLYAQLRGMDADRNADLFAELLDFTRLGPFTKRLAGKLSGGMKQKLG LACALMARPKVLLLDEPGVGVDPVSRQDLWRMVQALTDEGMAVVWSTAYLDEAERCES VLLLNQGKLLFDGPPQELTAQLEGRSFRLEDVGAERRAVLTQALDLPSVSDGVIQGAG VRVVLREGAQAEQLQALSDQARVELAQVPARFEDAFIDLLGGGPGGTSTLAERLPPVE LGSDIAVSCRNLTKRFGEFTATDNVSFEVQKGEIFGLLGPNGAGKSTTFKMLCGLMKP TAGEAHVVGHDLRRATGAAKSRLGYMAQKFSLYGLLSVQQNLEFSAGVYGLEGNTRRE RIAEMIETFDLGDWLSATPDSLPLGHKQRLALACSLMHRPPVLFLDEPTSGVDPITRR EFWTHINGLARKGVTIMVTTHFMDEAEYCDRVAMLSRAQLIALDTPDALKRSAVSPER PDPTMEDAFIHLVESADRELEAAT" misc_feature 1824892..1825542 /locus_tag="Alide2_1725" /note="The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency...; Region: ABC_subfamily_A; cd03263" /db_xref="CDD:73022" misc_feature 1824895..1825779 /locus_tag="Alide2_1725" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:31326" misc_feature 1824985..1825008 /locus_tag="Alide2_1725" /note="Walker A/P-loop; other site" /db_xref="CDD:73022" misc_feature order(1824994..1824999,1825003..1825011,1825126..1825128, 1825354..1825359,1825453..1825455) /locus_tag="Alide2_1725" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73022" misc_feature 1825117..1825128 /locus_tag="Alide2_1725" /note="Q-loop/lid; other site" /db_xref="CDD:73022" misc_feature 1825282..1825311 /locus_tag="Alide2_1725" /note="ABC transporter signature motif; other site" /db_xref="CDD:73022" misc_feature 1825342..1825359 /locus_tag="Alide2_1725" /note="Walker B; other site" /db_xref="CDD:73022" misc_feature 1825366..1825377 /locus_tag="Alide2_1725" /note="D-loop; other site" /db_xref="CDD:73022" misc_feature 1825441..1825461 /locus_tag="Alide2_1725" /note="H-loop/switch region; other site" /db_xref="CDD:73022" misc_feature 1825849..1826568 /locus_tag="Alide2_1725" /note="PQQ-dependent alcohol dehydrogenase system; Region: PQQ_ABC_ATP; TIGR03864" /db_xref="CDD:188394" misc_feature 1825864..1826505 /locus_tag="Alide2_1725" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1825948..1825971 /locus_tag="Alide2_1725" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(1825957..1825962,1825966..1825974,1826089..1826091, 1826317..1826322,1826416..1826418) /locus_tag="Alide2_1725" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 1826080..1826091 /locus_tag="Alide2_1725" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 1826245..1826274 /locus_tag="Alide2_1725" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 1826305..1826322 /locus_tag="Alide2_1725" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 1826329..1826340 /locus_tag="Alide2_1725" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 1826404..1826424 /locus_tag="Alide2_1725" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene 1826601..1827770 /locus_tag="Alide2_1726" /db_xref="GeneID:10482764" CDS 1826601..1827770 /locus_tag="Alide2_1726" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1018 ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_004387631.1" /db_xref="GI:330824328" /db_xref="InterPro:IPR013525" /db_xref="GeneID:10482764" /translation="MNGTTKHKDGNGPQQTDLRHFDLRRLIALVTKESYQALRDPSTL LIAFVLPVVLLLLFAYAVSLDAKDVRVGVVLESPGAAAQELAAAFAGTKFLDAHFAHD RREVADQLVSGDLRGYVVIPQDFEQRLAQRGSEPLVQIVTDGSYPNTANYVENYARGV VQSWRAGLDVGAPAQAVMLEPRYWFNPELESRRALIPGAIAIVMTIIGTMLTALVVAR EWERGTMEAVLSTPASVAEILIGKLLPYFVLGMLSTLGAAALAVFVFGVPMRGSLAAL LLLSAVFMVPALGQGLLISSLARNQFLAAQIALFTGFLPAFMLSGFLYEIDAMPAPIR AITLVVPARYFVDSLKTVFLAGDIWAVFLPNLAAMAAIGGLFFVIAKRATRKNLE" misc_feature 1826880..1827767 /locus_tag="Alide2_1726" /note="ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842" /db_xref="CDD:31184" misc_feature <1827183..1827764 /locus_tag="Alide2_1726" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene 1827775..1828893 /locus_tag="Alide2_1727" /db_xref="GeneID:10482765" CDS 1827775..1828893 /locus_tag="Alide2_1727" /inference="protein motif:PFAM:PF01061" /note="PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1017 ABC-2 type transporter" /codon_start=1 /transl_table=11 /product="ABC-2 type transporter" /protein_id="YP_004387632.1" /db_xref="GI:330824329" /db_xref="InterPro:IPR013525" /db_xref="GeneID:10482765" /translation="MLTSAFSFTRLRAQFIKEVLSVLRDPRSRMVVFVPPILQLLVFA FAATLEVRNVDIAVYDQDAGRWSHELVQRLDSARFITHVRHVDSQQQLHELIDRGEVI AALAIPVDFSRSIAAGESGRAQVLVDGRRSNSGQITVAYLSTIAADVGAEVVPDAQAP TPVVVRHWFNPNLVYRWFIVPGLTGILALFSSLLITSLSIARERELGTFDQLLVSPTS TPEIIISKSLPALAIGTGLGLFMISAGVFLFGIPFTGSFALLLASLVLFIASVVGIGL MISAVSMTQQQAILGAFAIGVPAVLMSGFATPVENMPVVLQWLAQAIPLTHFLIIVEG SFLKAMPPGDILASLWPLAVIALATLTMATVFVRGRLQ" misc_feature 1827850..1828869 /locus_tag="Alide2_1727" /note="ABC-2 family transporter protein; Region: ABC2_membrane_3; pfam12698" /db_xref="CDD:193174" misc_feature <1828378..1828785 /locus_tag="Alide2_1727" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene 1828890..1830428 /locus_tag="Alide2_1728" /db_xref="GeneID:10482766" CDS 1828890..1830428 /locus_tag="Alide2_1728" /inference="protein motif:TFAM:TIGR01845" /note="KEGG: rme:Rmet_1267 RND efflux system outer membrane lipoprotein NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="NodT family RND efflux system outer membrane lipoprotein" /protein_id="YP_004387633.1" /db_xref="GI:330824330" /db_xref="GO:0005215" /db_xref="GO:0008289" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010131" /db_xref="GeneID:10482766" /translation="MKSKPRTPFLRATVTGLTPGRARPLVLALSCVLLTACASVGPDY REPPPVDVGSGWSLPLASESQSADLSQWWSALDDPILDRLMATALAQNLDLRHAAARI DEARALRDRVAGEALPTAAAGASVNRRRQSENGPLPVGSIPGLDATQTIYDAGFDAAW EADLFGAKRRALEGASARLQATEAEAQGIRMRIVAEVARTWFTAVGARYELHAQQATL DTLQQTLELVRLRHALGDASAADVEAAYAQWTAVNALIPDIQARQRAAILSLGVLLGA PPERELALLDGPLTPSTLRALPVGERAEMLRRRPDVLAAERRLAASSADIGVATAELF PKLSIGVGGGFQALSTGDWFDASSSRFSILPLISWRLFDGGRVRAEIRAREAAERQAA LAYEQAVLAALGDAERALGDYHGGLDTLERRGMALDAARTSYGHAKARYAAGDIALVE LLAAQRSLHEAETAAARAHTNAAVQLVALYKALGGGWDVSTTASTATHPLRGAAAPVA FSSR" misc_feature 1828989..1830347 /locus_tag="Alide2_1728" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature 1829130..>1829528 /locus_tag="Alide2_1728" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature 1829796..1830341 /locus_tag="Alide2_1728" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene 1830449..1830652 /locus_tag="Alide2_1729" /db_xref="GeneID:10482767" CDS 1830449..1830652 /locus_tag="Alide2_1729" /inference="protein motif:PFAM:PF11127" /note="PFAM: Protein of unknown function DUF2892; KEGG: tmz:Tmz1t_1015 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387634.1" /db_xref="GI:330824331" /db_xref="InterPro:IPR021309" /db_xref="GeneID:10482767" /translation="MQINVGNLDRIVRIVIGLILLSLPLWLDSSWRWLGLIGIMPLLT GLAGRCPGYRLLGLSTCPMRKPE" misc_feature <1830551..1830640 /locus_tag="Alide2_1729" /note="Protein of unknown function (DUF2892); Region: DUF2892; pfam11127" /db_xref="CDD:192708" gene 1830660..1832069 /locus_tag="Alide2_1730" /db_xref="GeneID:10482768" CDS 1830660..1832069 /locus_tag="Alide2_1730" /inference="protein motif:PFAM:PF00753" /note="KEGG: rme:Rmet_1266 beta-lactamase-like protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like" /codon_start=1 /transl_table=11 /product="beta-lactamase domain-containing protein" /protein_id="YP_004387635.1" /db_xref="GI:330824332" /db_xref="GO:0016787" /db_xref="InterPro:IPR001279" /db_xref="InterPro:IPR011108" /db_xref="GeneID:10482768" /translation="MKLSFLGAAREVTGSCFLVEAANVRFLVDCGMVQGGRIAAARNH EPFAFDPASIDFVLLTHAHIDHSGLLPKLTRAGFKGSIYATPATVDLLGVMLPDSAHI QESDAKRVAKRLKEKTVPPPLYTLQDAHECLQQVRGIEYDREFAPRVGVRARFRDAGH ILGSAIVEVWITEYGYPTKIVFSGDLGQPGRPILRDPTPIEEADILVIESTYGDRRHK DFSATEADMIGIVEKTLFERGGNVIVPAFAVGRTQEVLYHLHRLTCEGRLQRPMVFVD SPMATEATRITREHLELFDEQAKRLAGWHARGENLPYLDFTASAEESMALNRIRSGAI IISASGMCDAGRIRHHLRHNLPRRECSILFPGFQAQGTLGRRLIEGAERVRIFGEDIP VRAAIHSVDGLSAHADQKALLDWARAFIQAPAQTFVVHGESSAAQTFADLLQQQLGWQ VTVPEYGHALRWPDFLAHE" misc_feature 1830660..1832030 /locus_tag="Alide2_1730" /note="Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]; Region: YSH1; COG1236" /db_xref="CDD:31429" misc_feature 1830684..1831289 /locus_tag="Alide2_1730" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" misc_feature 1831413..1831790 /locus_tag="Alide2_1730" /note="Beta-Casp domain; Region: Beta-Casp; pfam10996" /db_xref="CDD:192690" misc_feature 1831824..1831955 /locus_tag="Alide2_1730" /note="RNA-metabolising metallo-beta-lactamase; Region: RMMBL; pfam07521" /db_xref="CDD:191768" gene 1832069..1832935 /locus_tag="Alide2_1731" /db_xref="GeneID:10482769" CDS 1832069..1832935 /locus_tag="Alide2_1731" /inference="protein motif:TFAM:TIGR00730" /note="KEGG: rme:Rmet_1265 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387636.1" /db_xref="GI:330824333" /db_xref="InterPro:IPR005269" /db_xref="GeneID:10482769" /translation="MKPAEDLDERLRAIRESPTYRLAYEDIELLGQDELRPLRLQLEL LKPERILHEQGIRSTVVVFGSARVSDAETAEARLGVLERQALVTPEDVGLRQELARAN RRVEQARHYEQARRFSGLISARFQQQNRRDFVVVTGGGPGIMEAANRGAFEVGARSIG LNITLPHEQAPNPYMCPDLAFRFHYFALRKMHFLLHAKGLVAFPGGYGTLDELFEVLT LIQTRKMQRVPVVLVGRAFWRRVVDFDLLLDEGYVSSSDLDLFTCVDDAEEIVSALER FYVNRAAGDGAT" misc_feature 1832369..1832905 /locus_tag="Alide2_1731" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene 1832932..1834131 /locus_tag="Alide2_1732" /db_xref="GeneID:10482770" CDS 1832932..1834131 /locus_tag="Alide2_1732" /inference="protein motif:PFAM:PF09982" /note="PFAM: Protein of unknown function DUF2219; KEGG: rme:Rmet_1261 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387637.1" /db_xref="GI:330824334" /db_xref="InterPro:IPR018707" /db_xref="GeneID:10482770" /translation="MIGIGGYRWSLRGTKVRQPMQCVILLIAGALFSPISAFGSEVSL SANPPSCSPEQSLRWRGGTLRLENDLFTGSDRNYTNGVALTAVSRDLQGGLRPECLPQ PIGLYARFIGWADPGFWRDSGAQTSSQNLVVRFGQSMYTPENKTRTDVIPDDRPYAGL LYLGLAWNRRIHPQAASYEMLDVRELTLGVIGPWSLAEQSQDLVHRARGIERFRGWDN QLRNEPAFQMAMERKFKPYTEGAVRPGWGSDVIGSYALRVGNIETAASTGVEFRAGWN IPNDFGSYPIRPGAENRPPSGVADLRTTTPQSVLAPKPGAHVFLNLEGKAVAWDFSLD GNMFRHSHHVSRRPWIAQAALGISSQWIVAGRGVRLAVMRVWRTREFDQQAGHHAFGS IALSLEF" misc_feature 1833121..1834128 /locus_tag="Alide2_1732" /note="Uncharacterized protein conserved in bacteria (DUF2219); Region: DUF2219; cl01409" /db_xref="CDD:154386" gene 1834180..1834653 /locus_tag="Alide2_1733" /db_xref="GeneID:10482771" CDS 1834180..1834653 /locus_tag="Alide2_1733" /inference="similar to AA sequence:KEGG:Tmz1t_1007" /note="KEGG: tmz:Tmz1t_1007 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387638.1" /db_xref="GI:330824335" /db_xref="GeneID:10482771" /translation="MEKFVNQPLKSRSFFTVPLSVLLATFATALGAQSVEAAKPMALR TIMERLGRDMQAVTGAISKEDWPLVAELAPRIAKHAEPPMSEKMRILAWLGADAGKFR GLDGQVHDAATAMGEAAQRNDGQAVIAAFSKTQQSCLACHQSYRRSFVEKFYGSR" sig_peptide 1834180..1834293 /locus_tag="Alide2_1733" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.413 at residue 38" misc_feature 1834315..1834617 /locus_tag="Alide2_1733" /note="Cytochrome C'; Region: Cytochrom_C_2; cl01610" /db_xref="CDD:194176" gene complement(1834765..1835253) /locus_tag="Alide2_1734" /pseudo /db_xref="GeneID:10482772" gene 1835667..1836578 /locus_tag="Alide2_1735" /db_xref="GeneID:10482773" CDS 1835667..1836578 /locus_tag="Alide2_1735" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tmz:Tmz1t_1002 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387639.1" /db_xref="GI:330824336" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482773" /translation="MNLRHLRCFIAVAEELHFGRAARRLHIEQSPLSRTIRKLETTLG VTLLSRTPRGATLTWAGRVFLDDARRIMLSVEQAVASAKAAASGSQGILRIALSRDIG RARLSALLALCREESPQVNIRLSEVPLTELVQGLNANLFDAGFAMVNEVEDGIIAEPL WADPLVVILPARHPLVAFKEVPLQEVVSYPLVLCDPRACQGCGRQSERLFRSVDVQPI VAEYAASHGLMLTLVAAGYGLSFSTAAHLATCQPADVVVRPLAGQSASITTYLLRTEG GMTEPLQRFIERAERVCHQDASTSRAI" misc_feature 1835667..1836554 /locus_tag="Alide2_1735" /note="DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906" /db_xref="CDD:182137" misc_feature 1835673..1835852 /locus_tag="Alide2_1735" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1836009..1836533 /locus_tag="Alide2_1735" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature order(1836030..1836032,1836036..1836038,1836042..1836044, 1836174..1836176,1836276..1836281,1836336..1836341, 1836357..1836362,1836366..1836371,1836426..1836428) /locus_tag="Alide2_1735" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature order(1836105..1836107,1836246..1836251,1836270..1836272) /locus_tag="Alide2_1735" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene 1837133..1837888 /locus_tag="Alide2_1736" /db_xref="GeneID:10482774" CDS 1837133..1837888 /locus_tag="Alide2_1736" /inference="similar to AA sequence:KEGG:Tmz1t_1001" /note="KEGG: tmz:Tmz1t_1001 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387640.1" /db_xref="GI:330824337" /db_xref="GeneID:10482774" /translation="MEKSSCLAFGARIYYRPIEAAVRWAGLLRFEPRILETLGPRAMP EPNDFPRWPLLRLFSERIFDALAHDELSYGKAGMAQEPQRPALDDPALIVRHVDLKAW MSHYYPGERPPFLFDGIERELHPSVSVAMLNVLLADREAAKLQLAELAQLHAALKAQH EALAKEHASSIREGDASEPGLRSESTYLNIIGGLLTLLLGKSPAGSAYSSFRNMDAVI SALLAHHEGRPGISERTLWSKLAQARRHLEASR" gene 1838013..1838231 /locus_tag="Alide2_1737" /db_xref="GeneID:10482775" CDS 1838013..1838231 /locus_tag="Alide2_1737" /inference="protein motif:PFAM:PF05930" /note="PFAM: Prophage CP4-57 regulatory; KEGG: tmz:Tmz1t_1000 phage transcriptional regulator, AlpA" /codon_start=1 /transl_table=11 /product="phage transcriptional regulator AlpA" /protein_id="YP_004387641.1" /db_xref="GI:330824338" /db_xref="InterPro:IPR010260" /db_xref="GeneID:10482775" /translation="MSSQTIAPALPPEHRILRRAEVEAKTGFKRAHIYSLMKEGKFPK ALRLGVRAVGWDSVEIEQWIADRLKERA" misc_feature 1838052..1838204 /locus_tag="Alide2_1737" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene 1838272..1839138 /locus_tag="Alide2_1738" /db_xref="GeneID:10482776" CDS 1838272..1839138 /locus_tag="Alide2_1738" /inference="protein motif:PFAM:PF01656" /note="PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: tmz:Tmz1t_0999 cobyrinic acid ac-diamide synthase" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_004387642.1" /db_xref="GI:330824339" /db_xref="InterPro:IPR002586" /db_xref="GeneID:10482776" /translation="MQVVSIISTKGGVGKTTTAANLGGFIADAGLRVLLLDLDVQPTL SSYFTLDVRAPGGIYQMLAFNERRIEQLVSRTVIAGLDLVLSNDDRGELNTLLLHAPD GRLRLRHLLPVFRTHYDLLLIDTQGARSVLLEMAVLASDLALSPVTPEILAARELRRG TLQLIEDIAPYRHLGIEPPPLRLLINRVHPVSSNARLVQQALRQVFQEQAGVQVLGTD VPAIEAYPRAATRGLPVHRVEYRQPAGRTAPAALETMRTLAGELFPVWRERFALVTGR ADAGGAGHGERA" misc_feature 1838272..1839081 /locus_tag="Alide2_1738" /note="ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192" /db_xref="CDD:31385" misc_feature <1838620..1838829 /locus_tag="Alide2_1738" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature 1838641..1838643 /locus_tag="Alide2_1738" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene 1839122..1839358 /locus_tag="Alide2_1739" /db_xref="GeneID:10482777" CDS 1839122..1839358 /locus_tag="Alide2_1739" /inference="similar to AA sequence:KEGG:Tmz1t_0998" /note="KEGG: tmz:Tmz1t_0998 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387643.1" /db_xref="GI:330824340" /db_xref="GeneID:10482777" /translation="MASAHELARGRERLRALIEFALGEGWRVVRTSGGHLKFTKQGCA SIYTSSTASDHRADRNARAQLRRADRQAQENGRG" gene 1839345..1840994 /locus_tag="Alide2_1740" /db_xref="GeneID:10482778" CDS 1839345..1840994 /locus_tag="Alide2_1740" /inference="protein motif:TFAM:TIGR03764" /note="KEGG: tmz:Tmz1t_0997 hypothetical protein; manually curated; TIGRFAM: Integrating conjugative element, PFGI-1, ParB" /codon_start=1 /transl_table=11 /product="integrating conjugative element ParB" /protein_id="YP_004387644.1" /db_xref="GI:330824341" /db_xref="InterPro:IPR022304" /db_xref="GeneID:10482778" /translation="MAVAELTPQDMAAKLLATGFERSGPSAATLSDPIADTPMVVTLD QLRPYDHDPRVTRNPAYAEIKASIRERGLDAPPAITRRPGEAHYIIRNGGNTRLAILR ELWSETKEERFFRIACLFRPWPARGEIVALTGHLAENELRGGLTFIERALGIEKAREF YEQESGQALSQSELARRLTADGYPVPQSHISRMNDAVRYLLPAIPTLLYGGLGRHQVD RLAVLRKACERTWERRALGRPLTVDFASLFQDVLSQFDTQPEGFSPQRVQDELVGQMA ELLEADYDTLALEVDDSESRQRVLTSEPAAPNPATPVAPAAPAITPQLSPAAPTPRDT SPVAPPAETPSAPPAAAPNARDGQRDERLQGHIVTPAPTTERLQSIQRMVADQLGDKL PDFEADALRAIPVQVGGLFPISDVWYIEPGLDVPDRLRVHIAQFAREIAGEAAVGDHI EASDGGIGFVCVTPAVGQAKALPAFARAMLTLLHALSTAPAPATGLDSARLADDLGPL LHGHRGLVTRLSDAGLVKLFRLLRLARRLLDLEAGVASQDS" misc_feature 1839435..1840217 /locus_tag="Alide2_1740" /note="ParB family protein; Region: ICE_PFGI_1_parB; TIGR03764" /db_xref="CDD:163476" misc_feature 1839465..>1839656 /locus_tag="Alide2_1740" /note="ParB-like nuclease domain; Region: ParBc; cl02129" /db_xref="CDD:154762" gene 1841012..1841572 /locus_tag="Alide2_1741" /db_xref="GeneID:10482779" CDS 1841012..1841572 /locus_tag="Alide2_1741" /inference="similar to AA sequence:KEGG:Mpe_A2335" /note="KEGG: mpt:Mpe_A2335 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387645.1" /db_xref="GI:330824342" /db_xref="GeneID:10482779" /translation="MSAPHPLNQAVIAQALHDLRNGQLRRCKAMGFGEEELDALKHPE LVSMLVNATVSWCSVSVNREVLKRLLSQVHDVEREIATVDRMLRLGASTEMVSKFYGL THQEVALRRDILGLPKRKGRHPVLDEAQDVALWERWKAGITERHIALNDDMAMLALTM DLAEAMTLPMSVIWSAIRNWVDQGLV" misc_feature 1841027..1841563 /locus_tag="Alide2_1741" /note="Protein of unknown function (DUF2857); Region: DUF2857; pfam11198" /db_xref="CDD:151640" gene 1841576..1842778 /locus_tag="Alide2_1742" /db_xref="GeneID:10482780" CDS 1841576..1842778 /locus_tag="Alide2_1742" /inference="similar to AA sequence:KEGG:Mpe_A2336" /note="KEGG: mpt:Mpe_A2336 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387646.1" /db_xref="GI:330824343" /db_xref="GeneID:10482780" /translation="MTTGDAPRRDGPVALSALFDEALRHLEPKEPAQGTAPSQDGFLY SGNRHESVPRALFLDRRLTPLERNAWQVFRLQLNDDGVTAFPTYDQLRPYLASMPCAA QASHETVARALTLLRLTRWLSLVRRRRDPKTGRIQGNLYVLHDEPLSPFEAMQLDPDY LGLVSQALTHAAKAVQVVGMNTLREIAEDPLLSGRTLPTRLQVLAQRMARHGWTTPGY PQEGADHESEEGQEALLRNAARPSSESEAGPKPAPDSSLRIPKEDRTVRNDRINEVRT VPRARALQNLRLPERFLRLKDEQQAGALVALQQVDEAQRQAVLDEWAARCHNSAVRNP AGYLFGIIQKAIRGEFKAWAGTDAAAPPAPRAAGPASSSSPSASRPADPEVARAYLAR LRSALRDP" gene complement(1842830..1844047) /locus_tag="Alide2_1743" /db_xref="GeneID:10482781" CDS complement(1842830..1844047) /locus_tag="Alide2_1743" /inference="similar to AA sequence:KEGG:RPSI07_1104" /note="KEGG: rsl:RPSI07_1104 hypothethical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387647.1" /db_xref="GI:330824344" /db_xref="GeneID:10482781" /translation="MQDGKAVQLLLNGEEHGHGHVVEKLLKRAERLECLVAFAKISAI GDLLKPLRKALEGGLKARFAIGLDFYLTEPEALRQLFALAEKHALVLYLSNASDTFHP KIYAFQNGKQCSVIVGSANLTHGGFYGNYEASALIDDASGALMASVTRHLDALVADRI LVPATKPRIDAYEREYIIHDTCRKVAKKRAQKASRTEGPDFTILADLLELMKSDDSAH GFTAQKTGRKGNLRQARRRLAELAALSSNARRDFPSKYDALIGLFHSGGLHRGKSRIA NHPGQFVAAVADILDRRNLSPAEAFTVLHRHFGAITGAGINLLTEILHALDNKRFAVM NQNAVSGLALAGIRDYPLHPTKQNVSAESYARYCGHADTVRRSLGLDDFTELDALFNY AYWRETEEDEAAT" misc_feature complement(1843637..1843990) /locus_tag="Alide2_1743" /note="Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain; Region: PLDc_Bfil_DEXD_like; cd09117" /db_xref="CDD:197216" misc_feature complement(order(1843637..1843639,1843643..1843645, 1843649..1843663,1843685..1843687,1843691..1843693, 1843697..1843699,1843736..1843753)) /locus_tag="Alide2_1743" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197216" misc_feature complement(order(1843652..1843654,1843685..1843687, 1843691..1843693,1843739..1843741,1843745..1843747)) /locus_tag="Alide2_1743" /note="putative active site [active]" /db_xref="CDD:197216" misc_feature complement(1843745..1843747) /locus_tag="Alide2_1743" /note="catalytic site [active]" /db_xref="CDD:197216" gene 1844284..1845072 /locus_tag="Alide2_1744" /db_xref="GeneID:10482782" CDS 1844284..1845072 /locus_tag="Alide2_1744" /inference="protein motif:TFAM:TIGR03761" /note="KEGG: mpt:Mpe_A2339 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4669; PFAM: Integrating conjugative element protein, PFL4669" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387648.1" /db_xref="GI:330824345" /db_xref="InterPro:IPR014996" /db_xref="GeneID:10482782" /translation="MANERTEPLQLNLGSLRSAMSLTLHTHHASRIWHGRAPTEGRPG IIGLNGFIGAMNKMKRGAEQDDPYSDWWMLRIEDKLADTKTRLQTLREQVDQALADVP AALSLGENMNVQPVKLPLFVNAQLGFMAVYLLADYDDLARKLILAHHTALIDRSTLER WLNDGAHALRSLFSLAQQYRYSGTTRDDFAAKNAAARAALEKFGELPQDVLEGTRRSR FAPPIARRSNKPGTPPAAPAIVPDAQAPTGGAADGAAGDEGVGA" misc_feature 1844311..1844961 /locus_tag="Alide2_1744" /note="Domain of unknown function (DUF1845); Region: DUF1845; cl07481" /db_xref="CDD:195569" gene 1845069..1845617 /locus_tag="Alide2_1745" /db_xref="GeneID:10482783" CDS 1845069..1845617 /locus_tag="Alide2_1745" /inference="similar to AA sequence:KEGG:Tmz1t_0992" /note="KEGG: tmz:Tmz1t_0992 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387649.1" /db_xref="GI:330824346" /db_xref="GeneID:10482783" /translation="MTASPPISHSTRFVALEQADFQRLEHAGYLKGLLQPFKGKGSLE TWASQCAALRDDVIGLAQRRVLPQARAYPFSLLDVQLAQQATGAGTTFLRWRNLDRSS MGVALWEALLANPATPASLIDELYAIELQRIVLNMQISLTHSIARQALECANKAAQAE AAYLRRVHGHTASVPPTTKESP" misc_feature 1845105..1845587 /locus_tag="Alide2_1745" /note="Protein of unknown function (DUF3158); Region: DUF3158; pfam11358" /db_xref="CDD:151799" gene 1845614..1845997 /locus_tag="Alide2_1746" /db_xref="GeneID:10482784" CDS 1845614..1845997 /locus_tag="Alide2_1746" /inference="protein motif:PFAM:PF00436" /note="PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein" /codon_start=1 /transl_table=11 /product="single-strand binding protein/Primosomal replication protein n" /protein_id="YP_004387650.1" /db_xref="GI:330824347" /db_xref="GO:0003697" /db_xref="InterPro:IPR000424" /db_xref="GeneID:10482784" /translation="MSTHFVGEGNIGSAPDYREFPNGNDEPRRLLRLNVYFDNPIPKK DGEYEDRGGFWAPVELWHRDAEHWKTLYQKGMRVLVEGRTVRDEWEDADENERVTFKV EARRVGILPYRIESVALSAKPAGGQ" misc_feature 1845626..1845943 /locus_tag="Alide2_1746" /note="SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496" /db_xref="CDD:72968" misc_feature order(1845626..1845637,1845722..1845730,1845773..1845775, 1845779..1845781,1845842..1845844,1845869..1845871, 1845902..1845904,1845911..1845913) /locus_tag="Alide2_1746" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:72968" misc_feature order(1845641..1845649,1845665..1845667,1845707..1845709, 1845728..1845733,1845767..1845772,1845776..1845778, 1845782..1845784,1845788..1845790,1845794..1845796, 1845833..1845838,1845860..1845862,1845866..1845868, 1845872..1845877,1845914..1845916,1845920..1845922) /locus_tag="Alide2_1746" /note="ssDNA binding site [nucleotide binding]; other site" /db_xref="CDD:72968" misc_feature order(1845842..1845844,1845848..1845850,1845854..1845856, 1845935..1845937) /locus_tag="Alide2_1746" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:72968" gene 1846291..1848306 /locus_tag="Alide2_1747" /db_xref="GeneID:10482785" CDS 1846291..1848306 /locus_tag="Alide2_1747" /EC_number="5.99.1.2" /inference="protein motif:TFAM:TIGR01056" /note="SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger" /codon_start=1 /transl_table=11 /product="DNA topoisomerase III" /protein_id="YP_004387651.1" /db_xref="GI:330824348" /db_xref="GO:0003677" /db_xref="GO:0003916" /db_xref="InterPro:IPR003601" /db_xref="InterPro:IPR003602" /db_xref="InterPro:IPR005738" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR013497" /db_xref="InterPro:IPR013498" /db_xref="GeneID:10482785" /translation="MRVFLCEKPSQGKDIARVLGAGQRGNGCYSGAGVVVTWCIGHLV EAVPPEGYGEQYKRWAIEQLPILPERWRVEPKSATAAQFKVVQQLVAKAGELVIATDA DREGEMIAREIIDLCSYRGPIQRLWLSALNDVSIRKALGALKPSAETLPLYFSALARS RADWLIGMNLSRLFTLLGRQAGYTGVLSVGRVQTPTLKLVVDRDREIARFVCVPFWAI EVALSHAGQSFVASWTPPQGSTDDAGRCLQQPVAQQAVERLRTAGAAQVRSVETERVR EGPPLPFDLGTLQEVCSKQLGLDVQETLDIAQALYETHKATTYPRSDSGYLPESMLAE VPTVLDSMVKTDPSLRPLIERLDRQQRSRAWNDGKVSAHHGIIPTLEPANLSAMNEKE LAVYRLIRAHYLAQFLPHHEFDRTVAQFSCGSQSLAAVGKQIAVIGWREVLATPGPDD ADGEDAQRSQVLPALHAGLSCPVGKVDLKALKTLPPKPYTQGELIKAMKTVAKFVTDP RLKQKLRDTTGIGTEATRANIINGLIGRGYLVKKGRAVRASDAAFTLIDAVPSAIADP GTTAVWEHALDMIEAGQMALDTFIEKQAAWVGQLVQQYRGATLSLKLPPAPACPQCGA PMQQRTGKSGAFWSCSRYPDCKGTLPIESPTGRRSAPRKRRAASKAS" misc_feature 1846291..1848240 /locus_tag="Alide2_1747" /note="DNA topoisomerase III; Provisional; Region: PRK07726" /db_xref="CDD:181093" misc_feature 1846291..1846719 /locus_tag="Alide2_1747" /note="TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by:...; Region: TOPRIM_TopoIA_TopoIII; cd03362" /db_xref="CDD:173782" misc_feature order(1846309..1846314,1846321..1846323,1846591..1846593, 1846597..1846599,1846603..1846605) /locus_tag="Alide2_1747" /note="active site" /db_xref="CDD:173782" misc_feature order(1846330..1846332,1846594..1846596,1846600..1846602, 1846621..1846626,1846630..1846635) /locus_tag="Alide2_1747" /note="putative interdomain interaction site [polypeptide binding]; other site" /db_xref="CDD:173782" misc_feature order(1846591..1846593,1846597..1846599) /locus_tag="Alide2_1747" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173782" misc_feature 1846600..1846602 /locus_tag="Alide2_1747" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173782" misc_feature 1846741..1848093 /locus_tag="Alide2_1747" /note="DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded...; Region: TOP1Ac; cd00186" /db_xref="CDD:73184" misc_feature order(1846741..1846821,1846849..1846911) /locus_tag="Alide2_1747" /note="domain I; other site" /db_xref="CDD:73184" misc_feature order(1846765..1846770,1846777..1846779,1846789..1846791, 1846801..1846803,1847212..1847214,1847224..1847226, 1847251..1847253,1847860..1847865,1847872..1847877, 1847881..1847883,1847893..1847898) /locus_tag="Alide2_1747" /note="DNA binding groove [nucleotide binding]" /db_xref="CDD:73184" misc_feature order(1846882..1846884,1846894..1846896,1847968..1847970) /locus_tag="Alide2_1747" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73184" misc_feature order(1846924..1846947,1847080..1847124,1847515..1847559, 1847563..1847619,1847710..1847742) /locus_tag="Alide2_1747" /note="domain II; other site" /db_xref="CDD:73184" misc_feature order(1847125..1847145,1847149..1847235,1847239..1847295, 1847296..1847316,1847404..1847430,1847452..1847514) /locus_tag="Alide2_1747" /note="domain III; other site" /db_xref="CDD:73184" misc_feature order(1847158..1847160,1847170..1847178,1847407..1847409, 1847470..1847472,1847479..1847481,1847491..1847493, 1847854..1847856,1847860..1847862,1847926..1847928) /locus_tag="Alide2_1747" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:73184" misc_feature order(1847245..1847247,1847251..1847253,1847407..1847409) /locus_tag="Alide2_1747" /note="catalytic site [active]" /db_xref="CDD:73184" misc_feature order(1847743..1847784,1847836..1847916,1847926..1847970, 1847977..1848093) /locus_tag="Alide2_1747" /note="domain IV; other site" /db_xref="CDD:73184" misc_feature <1848175..1848249 /locus_tag="Alide2_1747" /note="Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; cl11977" /db_xref="CDD:143760" gene 1849086..1849322 /locus_tag="Alide2_1748" /db_xref="GeneID:10482786" CDS 1849086..1849322 /locus_tag="Alide2_1748" /inference="similar to AA sequence:KEGG:Tmz1t_0989" /note="KEGG: tmz:Tmz1t_0989 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387652.1" /db_xref="GI:330824349" /db_xref="GeneID:10482786" /translation="MSEPSASSSATAVRSGALALAWTGKRLPLQVLRSAAGHYIGTQD DEGPVSRESVEYFPTHLAAQRALDTHAWTQRAHP" sig_peptide 1849086..1849145 /locus_tag="Alide2_1748" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.883) with cleavage site probability 0.530 at residue 20" gene 1849348..1849740 /locus_tag="Alide2_1749" /db_xref="GeneID:10482787" CDS 1849348..1849740 /locus_tag="Alide2_1749" /inference="similar to AA sequence:KEGG:Ajs_2230" /note="KEGG: ajs:Ajs_2230 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387653.1" /db_xref="GI:330824350" /db_xref="GeneID:10482787" /translation="MNLSLPEDVLDQMALEQAHFDAAPQAFFEAWKRGAQIAGHEWFG DGTREGLQRATTKWDLRPNMLMLNDALGVLRSGQRMFLSAMVSFYNSREGGAMLKRCG FEGLSDFGGLDLERRQVIADLTLHYNGW" gene 1849991..1850707 /locus_tag="Alide2_1750" /db_xref="GeneID:10482788" CDS 1849991..1850707 /locus_tag="Alide2_1750" /inference="similar to AA sequence:KEGG:Ajs_2229" /note="KEGG: ajs:Ajs_2229 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387654.1" /db_xref="GI:330824351" /db_xref="GeneID:10482788" /translation="MSHSKNPFVRGYDGLSVQRLLAISYDDDCPLSYLPLHVSQSHLP DSQVERHACVFCDDFALITEGQNVPPELDAQCPSHGIARNLVYAVMAEEAGQPLHVGD TFSEEAAREVVRRLRFETGFYSRAWEISSAHITVEAGRYLANLADIATPSGFLFVAFR IPYSPAVGVKLIATPWTDENLQRVEGITAERLQREHRRKGMPESLVEVLHLAALADVR LLIFDADAPVLDGLTLYDDE" gene 1850998..1851798 /locus_tag="Alide2_1751" /db_xref="GeneID:10482789" CDS 1850998..1851798 /locus_tag="Alide2_1751" /inference="similar to AA sequence:KEGG:Tmz1t_0980" /note="KEGG: tmz:Tmz1t_0980 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387655.1" /db_xref="GI:330824352" /db_xref="GeneID:10482789" /translation="MDTQAIRAQMPTLVVGHVPSNVRSFKFNIFDGQPKVSTLGFHID PKPFEGKVIATTDEAIVVKTGRAEFAVLDRTLVTEVPDEGAKVQVEPYVRRRFDGQRA DTPEEQTEFTADGQPYTVKRFVLGSAPAKLPIPEPRCPELQELIDQLEQLPAPDGFRR ITHMLVDAGARDITWVDPLPADIIRTPPAIGFTVATMKFQGHVTVLYERGLDLYAVEL RRDGELIERVDEVFFDTLGETLERLIDDGSWRRIRVQCLLSGRKAVRH" gene 1851865..1852227 /locus_tag="Alide2_1752" /db_xref="GeneID:10482790" CDS 1851865..1852227 /locus_tag="Alide2_1752" /inference="similar to AA sequence:KEGG:Tmz1t_0979" /note="KEGG: tmz:Tmz1t_0979 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387656.1" /db_xref="GI:330824353" /db_xref="GeneID:10482790" /translation="MTVRFKGTELRPVLAEAVANQCRVILVKDQGVYFLAERGERRPD GRQKTIAYAAGCNPDVDAFDDWWELARAEFGGDDFGEFFDPQEGVFARILHSEDDLDV SATTTHLSLQAVPPPSGN" misc_feature 1851928..1852203 /locus_tag="Alide2_1752" /note="Protein of unknown function (DUF3085); Region: DUF3085; pfam11284" /db_xref="CDD:151725" gene 1852572..1853123 /locus_tag="Alide2_1753" /db_xref="GeneID:10482791" CDS 1852572..1853123 /locus_tag="Alide2_1753" /inference="similar to AA sequence:KEGG:Mpe_A2362" /note="KEGG: mpt:Mpe_A2362 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387657.1" /db_xref="GI:330824354" /db_xref="GeneID:10482791" /translation="MTTSNEKSYFDLHITGLGYLNRIREVKPKKGDAFLACDIAALNG PSDDVSYVRFDTRVSGSEAQHLVRRCIQAVDAEKKVMIGFRLGDLWTDTFTYSKGKRA GEQGVSLKARLLFVSWIKVDGKLVYKAEPKPTETDERDPEVPVTSDASAAQQASAPEP SKPVADAADDAADAPALAVAESF" misc_feature 1852572..1852985 /locus_tag="Alide2_1753" /note="Protein of unknown function (DUF3577); Region: DUF3577; pfam12101" /db_xref="CDD:152536" gene 1853178..1853789 /locus_tag="Alide2_1754" /db_xref="GeneID:10482792" CDS 1853178..1853789 /locus_tag="Alide2_1754" /inference="similar to AA sequence:KEGG:Mpe_A2363" /note="KEGG: mpt:Mpe_A2363 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387658.1" /db_xref="GI:330824355" /db_xref="GeneID:10482792" /translation="MITIPGQLAIKTIHGRNGDFNVGRLATSIGEFVVKNAELDQYRE GKYDGDFVIVEIRPSTYNANGRMVIEIRAHLGGMTLSNIDALSRDEARRLSPQEVDPI DEEAQAPAPASPPAKPKAKPRSPRDPLVDTTPFGSEPAPVSAAASAEADDAALFGALW PLGETVKLDATVDRRVLRQQRDRLDKLGYEFAPLSQDWHLKAA" misc_feature 1853181..1853780 /locus_tag="Alide2_1754" /note="Protein of unknown function (DUF3275); Region: DUF3275; pfam11679" /db_xref="CDD:152115" gene 1853878..1854243 /locus_tag="Alide2_1755" /db_xref="GeneID:10482793" CDS 1853878..1854243 /locus_tag="Alide2_1755" /inference="similar to AA sequence:KEGG:Mpe_A2364" /note="KEGG: mpt:Mpe_A2364 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387659.1" /db_xref="GI:330824356" /db_xref="GeneID:10482793" /translation="MGWTFVRQTRDQLIRELLAPQASERACCEVIDHTLDGDVLWTVV RVTAMQAGVMGLAAGESVCYIGCNLLESSGGDWGYKSLDESVHPYYYSCPLRYLDMAP VQSSEWRERVHRFHAGRAV" gene 1854328..1854978 /locus_tag="Alide2_1756" /db_xref="GeneID:10482794" CDS 1854328..1854978 /locus_tag="Alide2_1756" /inference="similar to AA sequence:KEGG:Tmz1t_0975" /note="KEGG: tmz:Tmz1t_0975 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387660.1" /db_xref="GI:330824357" /db_xref="GeneID:10482794" /translation="MPAPSSAKPLYRIDECPDLMADGCVGDEQGNLVFLSIWARDTAV QEFLARLTLGRDEQGLDQFHVITEQGASIPVFVGNVENLEKRITRAYRRTLFGSLTNV WLFDRRCVKPDKANASALALLPRDSAHRLDRLWTLVQDTCPLPLLDHWRDTVLELLQT RRMLTGLPLALGPLEGHRLALDVPALTKALGELIRNGTLGATQYELAANAPLRRVA" gene 1855044..1856153 /locus_tag="Alide2_1757" /db_xref="GeneID:10482795" CDS 1855044..1856153 /locus_tag="Alide2_1757" /inference="similar to AA sequence:KEGG:Tmz1t_0974" /note="KEGG: tmz:Tmz1t_0974 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387661.1" /db_xref="GI:330824358" /db_xref="GeneID:10482795" /translation="MALMFPRLARNFIRNGYFPTDEPTLERALSALAPSPGSMSILDP CAGEGVAIAEAAHALGREQVQAFAVEYDAERARHARQLVDRCIQGDLMDTLISRQSFG LLWLNPPYGDLSKDVNGNIGYQGQGRARLEKLFYQRALPLLQYGGVLIFIVPSYVLDP ELVGWLTRHFVDLRIYRAVETQFKQVVIFGRRIRQRDQASESVKAVRGLLLQIGQGDA EAEELPLEWPFLPYTVPASPAEPEHFYRVTMEPEQFADEVGRLQGLWPALDTHLGAAQ QSLRPPARALSHWHLALALAAGAISGVVTSKSGRVLVVKGDTHKEKMLQTEYTERDDG SVAETRILTDKFVPVIRAWDLTLGSPTWGEVLTIR" misc_feature 1855101..>1855373 /locus_tag="Alide2_1757" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 1856255..1856560 /locus_tag="Alide2_1758" /db_xref="GeneID:10482796" CDS 1856255..1856560 /locus_tag="Alide2_1758" /inference="similar to AA sequence:KEGG:Ajs_2221" /note="KEGG: ajs:Ajs_2221 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387662.1" /db_xref="GI:330824359" /db_xref="GeneID:10482796" /translation="MALAVLNLGSQARFSPGQVVMTAGVDELVRQGRLNPSPYLRRHL HGDWGDLDDSDRRQNDAALQSGEDRLFSSYQVTRDLKLWIITEWDRSVTTLLLPSEY" gene 1856661..1858931 /locus_tag="Alide2_1759" /db_xref="GeneID:10482797" CDS 1856661..1858931 /locus_tag="Alide2_1759" /inference="protein motif:SMART:SM00487" /note="SMART: DEAD-like helicase, N-terminal; KEGG: tmz:Tmz1t_0972 DEAD-like helicase" /codon_start=1 /transl_table=11 /product="DEAD-like helicase" /protein_id="YP_004387663.1" /db_xref="GI:330824360" /db_xref="InterPro:IPR014001" /db_xref="GeneID:10482797" /translation="MSLDLETVPETAVQGDLLETAASPLTLSLQDFVSEFGDELLDSL NRANPPVYTGQVRVHRQLILAALMRKLFPAQADVVHAVTELLVDRGERAAIVNGEMGC GKTTVGIATAAVLNAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKL LKLREQLGVPAQGQEFFVLGRVRMRMGFHWKPVFVRRRTPHGDVGACPDCGHVITDLD GEPINPVELEAEESRRKCSHCRAPLWSLIRPRGLSASDQSSTVLKALKRIPTIGEVTA QKLMQKFGDAFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGG YQPSEFIKRQLPQGTFDLLIADEAHEYKNGGSAQGQAMGVLAAKARKTLLLTGTLMGG YGDDLFHLLFRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGVLKDIYSESTGTAHKT AKGTKVSVRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQ AAAYRDLAGRLTQELKQALAKRDTTLLGVVLNVLLAWPDCCFRSETVVHPRTRNTLAF VPAQFNELELMPKERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKV AVLRASVDASRREDWIAEQLDRCIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSL QQAARRSWRIGQKQPVRVIYLGYANSSQMTCLGLMARKIMVSQSTSGDEPESGLDVLN QDGDSVEVALARQLVH" misc_feature 1856847..>1857083 /locus_tag="Alide2_1759" /note="DEAD-like helicases superfamily; Region: DEXDc; smart00487" /db_xref="CDD:128763" misc_feature 1858395..1858763 /locus_tag="Alide2_1759" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(1858473..1858484,1858542..1858547,1858620..1858622, 1858626..1858631) /locus_tag="Alide2_1759" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(1858647..1858649,1858710..1858712,1858722..1858724, 1858731..1858733) /locus_tag="Alide2_1759" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene complement(1858984..1859127) /locus_tag="Alide2_1760" /pseudo /db_xref="GeneID:10482798" gene 1859238..1860182 /locus_tag="Alide2_1761" /db_xref="GeneID:10482799" CDS 1859238..1860182 /locus_tag="Alide2_1761" /inference="protein motif:PFAM:PF09828" /note="PFAM: Chromate resistance exported protein; KEGG: har:HEAR0891 putative chromate resistance protein" /codon_start=1 /transl_table=11 /product="chromate resistance exported protein" /protein_id="YP_004387664.1" /db_xref="GI:330824361" /db_xref="InterPro:IPR018634" /db_xref="GeneID:10482799" /translation="MSFLALFISLPTKASTGRMRVWRSVKALGCATLRDGVYLLPDSA DSATALDEVAAQSVEAGGSGEVYRLSECEEGQEATLRALFDRGEEYAGIAEEIKELGR SLASLDGAAAARKLQPLVRRFEHVARIDFFPGEAQRQTLSLLDDLRDALTRRLSPDEP TPRQADIPRLERADYRGRVWATRARPWVDRLASAWLIRRFIDPKASIVWLASPADCKA DWLGFDFDGATFSHVGTKVTFETLLASFGLEDDPALTRLGELVHCLDVGGLPVPEAPG IEQLLAGLRASESDDDALLVRACEVFDWLLKSYEEKTT" misc_feature 1859775..1860167 /locus_tag="Alide2_1761" /note="Chromate resistance exported protein; Region: Chrome_Resist; cl01744" /db_xref="CDD:154566" gene 1860236..1861411 /locus_tag="Alide2_1762" /db_xref="GeneID:10482800" CDS 1860236..1861411 /locus_tag="Alide2_1762" /inference="protein motif:TFAM:TIGR00937" /note="KEGG: sfu:Sfum_0092 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter" /codon_start=1 /transl_table=11 /product="chromate transporter" /protein_id="YP_004387665.1" /db_xref="GI:330824362" /db_xref="InterPro:IPR003370" /db_xref="InterPro:IPR014047" /db_xref="GeneID:10482800" /translation="MSYLQLFVRFLKFGLLAWGGPVAQIAMLRRELVDEERWISSKRF NKLLAVMQVLPGPEAHEICVHLGIRAKGRLGGVLAGLGFMLPGFLLMFALSWLYFQIE LVGTSLGAAFLGVQAAVIALIVRAVHRIGEHILLDRWLWAIAIVCALAAMGRVDFWIT LPAGGLVYALLVLKHRASALLVTLAAVALATAVAFWAEPTAKLVETVVQGQASVLLIF ASGLKAGLLTFGGAYTAIPFVRNDAVGRGWMTDGQFLDGLALSGVLPAPLIIFATFVG YVAGGPIGAVAMTAGIFLPAFAFSLIFYDRLEAVVENKRLHAFLDGVAAGVVGLIGAT TIDLARVTAERVPSLTAGMSIFAAALAFLYAWKNKLNVVVVILAAGLAGWLVFPGQG" misc_feature 1860239..1860745 /locus_tag="Alide2_1762" /note="Chromate transporter; Region: Chromate_transp; pfam02417" /db_xref="CDD:190304" misc_feature 1860263..1861321 /locus_tag="Alide2_1762" /note="chromate transporter, chromate ion transporter (CHR) family; Region: 2A51; TIGR00937" /db_xref="CDD:162120" misc_feature 1860872..1861321 /locus_tag="Alide2_1762" /note="Chromate transporter; Region: Chromate_transp; pfam02417" /db_xref="CDD:190304" gene 1861471..1862064 /locus_tag="Alide2_1763" /db_xref="GeneID:10482801" CDS 1861471..1862064 /locus_tag="Alide2_1763" /inference="protein motif:PFAM:PF02777" /note="PFAM: Manganese/iron superoxide dismutase, C-terminal; KEGG: rme:Rmet_6201 manganese and iron superoxide dismutase" /codon_start=1 /transl_table=11 /product="Manganese/iron superoxide dismutase" /protein_id="YP_004387666.1" /db_xref="GI:330824363" /db_xref="GO:0004784" /db_xref="GO:0046872" /db_xref="InterPro:IPR019832" /db_xref="GeneID:10482801" /translation="MPYELRSLSCDPAKLTGLSEKLIVSHWENNYGGAVKRLNAIEQK LAQLNWGAAPVFEINGLKREEMIASGSMILHEVYFDSLGGAGGDPGGTLKAAIERDFG SMDAWRAQFTAMGKAQGGGSGWTLLVWSPRRGRLVNAWAADHAHNLAGATPLIALDMY EHSYHMDFGAKAGAYVDAFMQNLSWTTAEAAFTRLGA" misc_feature 1861471..1862046 /locus_tag="Alide2_1763" /note="Superoxide dismutase [Inorganic ion transport and metabolism]; Region: SodA; COG0605" /db_xref="CDD:30950" misc_feature 1861747..1862040 /locus_tag="Alide2_1763" /note="Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777" /db_xref="CDD:145761" gene complement(1862139..1863044) /locus_tag="Alide2_1764" /db_xref="GeneID:10482802" CDS complement(1862139..1863044) /locus_tag="Alide2_1764" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: xom:XOO_1208 transposase" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004387667.1" /db_xref="GI:330824364" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10482802" /translation="MKAFIDDHRADYGVEPICKVLPIAPSTYYAHAARKADPALRSRR AKRDDALMPQIRRVWDENFAVYGVRKVWRQMRRERVDVARCTVARLMKRLGLRGVIRG KPVRTTVSDPKLACPLDKVQRQFTADRPNALWVSDFTYVSTWQGFVYVAFVIDVFARR IVGWRASSSARTDFVLDALEQALYARKPVGPERLVHHSDRGVQYVSIRYTERLAEAGL EPSVGSVGDSYDNALAETINGLYKAEVIHRRPSWRTRDEVEWATLAWVDWFNNRRLLE PIGNIPPAEAEQAYYSQSTGSVVTA" misc_feature complement(1862142..1862984) /locus_tag="Alide2_1764" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature complement(1862310..1862669) /locus_tag="Alide2_1764" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1863041..1863364) /locus_tag="Alide2_1765" /db_xref="GeneID:10482803" CDS complement(1863041..1863364) /locus_tag="Alide2_1765" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: azl:AZL_f00580 transposase" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004387668.1" /db_xref="GI:330824365" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10482803" /translation="MSRQGRFSPEVRERAVKLVLEHQTEYDSQWAAIGSVAAKIGCTA ETLRGWVRQQERDTGRREGMTTTEKERIKQLEREVRELRQANEILRKASAYFAQAELD RRSKR" misc_feature complement(1863107..1863364) /locus_tag="Alide2_1765" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1863505..1864407 /locus_tag="Alide2_1766" /db_xref="GeneID:10482804" CDS 1863505..1864407 /locus_tag="Alide2_1766" /inference="protein motif:PFAM:PF07485" /note="PFAM: Uncharacterised protein family, LppY/LpqO; KEGG: pop:POPTR_594759 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387669.1" /db_xref="GI:330824366" /db_xref="InterPro:IPR011094" /db_xref="GeneID:10482804" /translation="MTRKTRILFAAATAVCMQMAVAAGPTVDTATIESVTGLKGNYNK TENVFKVSKPRDDVKVSVDRWTMPPFMGLTSWAAFTPTGGSTMMMGDTVLFEDEVNPA MSAALEAGLEVTALHNHFFFDQPKVYFMHIGGMGDARQLATGVKAVYDRVAQVRASQP KPAKAFGGSIPTPSSITAARIEEILGAKAQVKDGMVKVSFGREAKMHGTPVGNEMGVN TWAAFAGTDEQAVVDGDFAMREGELQTVLKVLRREGINIVAIHNHMTHEEPRYVFLHY WGKGKAAELAQSLKRTLDAQKAVK" sig_peptide 1863505..1863573 /locus_tag="Alide2_1766" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.968 at residue 23" misc_feature 1863589..1863960 /locus_tag="Alide2_1766" /note="Domain of Unknown Function (DUF1259); Region: DUF1529; pfam07485" /db_xref="CDD:148856" misc_feature 1864036..1864392 /locus_tag="Alide2_1766" /note="Domain of Unknown Function (DUF1259); Region: DUF1529; pfam07485" /db_xref="CDD:148856" gene 1864509..1864964 /locus_tag="Alide2_1767" /db_xref="GeneID:10482805" CDS 1864509..1864964 /locus_tag="Alide2_1767" /inference="protein motif:PFAM:PF09828" /note="PFAM: Chromate resistance exported protein; KEGG: bph:Bphy_5141 ChrB protein" /codon_start=1 /transl_table=11 /product="chromate resistance exported protein" /protein_id="YP_004387670.1" /db_xref="GI:330824367" /db_xref="InterPro:IPR018634" /db_xref="GeneID:10482805" /translation="MQWITRERPKIDRIACPWLIARFIDESPEFLYVPSGDVMRIAAE TGATPYDVSGVELGHHGDQCSFDAFIAKYQLTDPPLQKLATIVRAADTGRPDLAKEAA GLLAISKGLSLNFEDDHEMLNAGMVMYDALYAWCADTPLKKVARLLGLK" misc_feature 1864515..1864919 /locus_tag="Alide2_1767" /note="Chromate resistance exported protein; Region: Chrome_Resist; cl01744" /db_xref="CDD:154566" gene 1864964..1866178 /locus_tag="Alide2_1768" /db_xref="GeneID:10482806" CDS 1864964..1866178 /locus_tag="Alide2_1768" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_6018 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004387671.1" /db_xref="GI:330824368" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10482806" /translation="MLLPAGAAPEARLLLIGRALRAFTDGFIAILLPVYLLALGLGTW EVGLISTATLFGSALATLAVGQWGHRFPQRRLLLAAAGLMCLTGLLLAGLGGVGDFWP LLLVAFVGTMNPSAGDVSVFLPLEHARLAESAQGEARTFLFARYTFVGALCAAAGSLA TAIPHALTAAGLAQLDALRLMFVAYGLTGVAIFVLYRALPDHHVHEQAAAPAPLGPSR GIVIKLAALFSVDALAGGLIVNTLLALWLFERFDLSLVAAGQFFFWAGLLSAGSQLAA PWAARRIGLINTMVFTHIPSSVCLILAAFADSLPVALALLFLRSALSQMDVPTRSAFV MAVVTPAERAAAASFTAVPRSLAAAASPAIGGALFSVGWLAAPLVACGVLKIAYDLAL WHAFRRHGEAAP" gene 1866286..1866969 /locus_tag="Alide2_1769" /db_xref="GeneID:10482807" CDS 1866286..1866969 /locus_tag="Alide2_1769" /inference="protein motif:PFAM:PF00072" /note="KEGG: gbm:Gbem_2672 winged-helix transcriptional response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal" /codon_start=1 /transl_table=11 /product="winged helix family two component transcriptional regulator" /protein_id="YP_004387672.1" /db_xref="GI:330824369" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10482807" /translation="MRILIIEDQSKVAQSVKHGLEAERFDVTVAATGEDGFFLVSSQV FDLLILDLMLPGRDGLEILRTLRSRGLATPVIILSARDTVGDRIRGLDLGADDYLVKP FAFEELLARIRALLRRGRAQDVLRLKVADLEVDRVTRRVARGGQDVELTAHEYELLDY LLLHQGRVVSREMLARDVWREVARATPLDNVIDVHIARLRRKIDNGHGHPLIHTVRGV GFVLQEQAP" misc_feature 1866292..1866951 /locus_tag="Alide2_1769" /note="heavy metal response regulator; Region: cztR_silR_copR; TIGR01387" /db_xref="CDD:130454" misc_feature 1866295..1866606 /locus_tag="Alide2_1769" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1866304..1866309,1866436..1866438,1866460..1866462, 1866520..1866522,1866577..1866579,1866586..1866591) /locus_tag="Alide2_1769" /note="active site" /db_xref="CDD:29071" misc_feature 1866436..1866438 /locus_tag="Alide2_1769" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1866445..1866450,1866454..1866462) /locus_tag="Alide2_1769" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1866586..1866594 /locus_tag="Alide2_1769" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1866664..1866951 /locus_tag="Alide2_1769" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(1866736..1866738,1866793..1866798,1866856..1866858, 1866865..1866867,1866889..1866894,1866925..1866927, 1866940..1866942) /locus_tag="Alide2_1769" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 1866966..1868420 /locus_tag="Alide2_1770" /db_xref="GeneID:10482808" CDS 1866966..1868420 /locus_tag="Alide2_1770" /inference="protein motif:TFAM:TIGR01386" /note="TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; KEGG: gbm:Gbem_2673 HAMP domain-containing sensor histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain" /codon_start=1 /transl_table=11 /product="heavy metal sensor signal transduction histidine kinase" /protein_id="YP_004387673.1" /db_xref="GI:330824370" /db_xref="GO:0000155" /db_xref="GO:0004673" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR006290" /db_xref="GeneID:10482808" /translation="MIMAWRRLTLRSRLTAAFALVFGAMLLAYALAVYLLIRDRFAAE LDHRLDQELEIAERSIARDADGRLAWRDVHGPETGEGQRLRNVSWLDVWRADGTLALR RQDAATDSGETPVLPPDTAWTGLRSLELPGEVHLRLLQRRVSLEGEMLLMRAALREDD FARGLVVVLWVMAGGLPLALLAAAAGGYWLAGRGLAPIHRMAEEAEAIHAGRLDARLP VDNPFDEPGRLAVSFNALLARLEAAFGELGRFTADASHELRTPLTVIRSVGEVGLREP HSEAEYRNIIGTMLEEVDRLTLLTTMLLELTRAEGRRTAIKRESIDLRELIRDAAGFL GVLAEEGRVCIDLDLPDSPVPVSGDWTMLRQAVVNLLDNAIKHSPPDAVVAIACRTHA DLAEITVADQGPGIPAEHLPHLFDRFYRVDAARGRQDGDRRGGFGLGLAIARWAVEAH GGRIEADSAPGKGSVFRIALPRERTLSHPEGTTP" sig_peptide 1866966..1867058 /locus_tag="Alide2_1770" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.657 at residue 31" misc_feature 1867554..1867691 /locus_tag="Alide2_1770" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cd06225" /db_xref="CDD:100122" misc_feature order(1867557..1867562,1867566..1867571,1867578..1867583, 1867587..1867589,1867638..1867643,1867647..1867652, 1867659..1867664,1867668..1867673,1867680..1867685) /locus_tag="Alide2_1770" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100122" misc_feature 1867701..>1867850 /locus_tag="Alide2_1770" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1867713..1867715,1867725..1867727,1867737..1867739, 1867746..1867748,1867758..1867760,1867767..1867769, 1867818..1867820,1867830..1867832,1867839..1867841) /locus_tag="Alide2_1770" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1867731..1867733 /locus_tag="Alide2_1770" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1868052..1868375 /locus_tag="Alide2_1770" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1868070..1868072,1868082..1868084,1868091..1868093, 1868160..1868162,1868166..1868168,1868172..1868174, 1868178..1868183,1868274..1868285,1868331..1868333, 1868337..1868339,1868352..1868357,1868361..1868363) /locus_tag="Alide2_1770" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1868082..1868084 /locus_tag="Alide2_1770" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1868172..1868174,1868178..1868180,1868274..1868276, 1868280..1868282) /locus_tag="Alide2_1770" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1868417..1869505 /locus_tag="Alide2_1771" /db_xref="GeneID:10482809" CDS 1868417..1869505 /locus_tag="Alide2_1771" /inference="protein motif:PFAM:PF01436" /note="PFAM: NHL repeat; KEGG: phe:Phep_1359 NHL repeat containing protein" /codon_start=1 /transl_table=11 /product="NHL repeat containing protein" /protein_id="YP_004387674.1" /db_xref="GI:330824371" /db_xref="InterPro:IPR001258" /db_xref="GeneID:10482809" /translation="MKYLVAAIVAALTVGGVAAGAEPEASVFPKTLPFPEVRTLAGDG QPGAADGSPGRVNRPHGLSYGNDGSLYFADRGNHQVRVLRSGGTVATVAGTGKAGFAD GPAHAARFNEPIAVAVERSGAVYVADRNNHRIRKIRPDGTVITLAGGDSAGFVDGDLK SARFNQPYGVALDAAQTTLYVADYLNHAIRRIDLVLDKVDTLAGNGAPGFADGQRATA RFNQPYNVRIDGQGRLWVPDQLNHAVRRVTPAGEVTTVAGAGKAGYADGPAATVRFDN PTGVAPLPNGAVVVADRNNNRLRLVTPDGAVATLAGAGEAGFADGTAASARFNQPLDV EFDDSMSRVLVSEDKGHRLRVLPKDTRR" sig_peptide 1868417..1868479 /locus_tag="Alide2_1771" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.519 at residue 21" misc_feature <1868534..1869325 /locus_tag="Alide2_1771" /note="haloacid dehalogenase-like hydrolase family protein; Region: PLN02919" /db_xref="CDD:178507" misc_feature 1868585..1868665 /locus_tag="Alide2_1771" /note="NHL repeat; Region: NHL; pfam01436" /db_xref="CDD:110440" misc_feature 1868744..1868827 /locus_tag="Alide2_1771" /note="NHL repeat; Region: NHL; pfam01436" /db_xref="CDD:110440" gene 1869543..1869809 /locus_tag="Alide2_1772" /db_xref="GeneID:10482810" CDS 1869543..1869809 /locus_tag="Alide2_1772" /inference="similar to AA sequence:KEGG:Nwat_1254" /note="KEGG: nwa:Nwat_1254 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387675.1" /db_xref="GI:330824372" /db_xref="GeneID:10482810" /translation="MKTRHALIALTVLITVPAVALAGWFGDERPPANAKPLSEIIKGV EEAGHKTIVELEFEDGVYEIEALDAQGKEVKLKVDPVSGKVNVK" sig_peptide 1869543..1869611 /locus_tag="Alide2_1772" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.870 at residue 23" gene 1869806..1870522 /locus_tag="Alide2_1773" /db_xref="GeneID:10482811" CDS 1869806..1870522 /locus_tag="Alide2_1773" /inference="protein motif:PFAM:PF00005" /note="KEGG: mno:Mnod_2229 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="ABC transporter-like protein" /protein_id="YP_004387676.1" /db_xref="GI:330824373" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482811" /translation="MTQAAPLLSVRGMIKRYGEATVLDGVDFDLSPGEILGIIGPNGA GKTTLMECLVGLLSADGGEVRLHGEPLPAARRREAMFYLPDGIAPWSDQPVWRATGLF RELHGLGAEREATVVRRLELKPVLAKRVSELSKGYRRRLLLVLALLTPQPILILDEPF DGFDLRQTLHVMDLLREVAAERALILSIHQLKDAERICDRLLLLDAGRRLGLGTLADL AAQAGAAHADLEEVFLGLTH" misc_feature 1869824..1870393 /locus_tag="Alide2_1773" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature 1869827..1870399 /locus_tag="Alide2_1773" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 1869923..1869946 /locus_tag="Alide2_1773" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(1869932..1869937,1869941..1869949,1870058..1870060, 1870274..1870279,1870370..1870372) /locus_tag="Alide2_1773" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 1870049..1870060 /locus_tag="Alide2_1773" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 1870202..1870231 /locus_tag="Alide2_1773" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 1870262..1870279 /locus_tag="Alide2_1773" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 1870286..1870297 /locus_tag="Alide2_1773" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 1870358..1870378 /locus_tag="Alide2_1773" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene 1870689..1871975 /locus_tag="Alide2_1774" /db_xref="GeneID:10482812" CDS 1870689..1871975 /locus_tag="Alide2_1774" /inference="similar to AA sequence:KEGG:Bcep1808_7485" /note="KEGG: bvi:Bcep1808_7485 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387677.1" /db_xref="GI:330824374" /db_xref="GeneID:10482812" /translation="MLFLLAPLAGYGFVEAVRLFGEASRTAMQFPEMARGMTPLDGIL VPTLGAFYLGTTLLFPFVAIRALGQDKESGALKLALQWPLSPAALVAVKLAAVCAAWS LSLAVPLSALVFWQVAGGHLAPAETANLFLGHALYALAVAGIAFFAAALAESAATAAI VTLAFTLGFWVLDFAAATGPEWLKTLGEISPTQALKQFERGLLPAAHGLSLAGLGLGL AALAALILPPGLSRSARFKRGAAGAAVLVLLLAATSMLNLSLDVSEDRRNSFNPADEA ALARMDRGLAISLYLAPEDSRAQEYQRNVLAKLKRLVPGLTVRWMETGKAGVFGAAGD EGYGRIIYEYAGRNATSRSNSPREILPLLHELAGVQVTPVETPPYPGHPLVADARPAE LWFYALLPALILLTFWRHARARRLPIHLRSIQGESS" gene 1871972..1872679 /locus_tag="Alide2_1775" /db_xref="GeneID:10482813" CDS 1871972..1872679 /locus_tag="Alide2_1775" /inference="similar to AA sequence:KEGG:Mnod_2227" /note="KEGG: mno:Mnod_2227 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387678.1" /db_xref="GI:330824375" /db_xref="GeneID:10482813" /translation="MKSRFLASLLFAALAVPALAAPTVQGFDNETVGAEPKSFAAAVG NWVIVEDAGNKGLSVNGTKWARGQTSAGLADKARALYGERYAEFLDNVQSYAYFPIAV MNEVADFREGTITVRFKGVDGRIDQAAGILFNVQPNGDYLTLRANPLEDNLVLWQYVK GKRSSVKWIRNTPTPSGQWHELKLTVKGKQVEGWMNGKLLLTHELPKPVSGRVGLWSK ADSVVYFDDYRVEPTSR" sig_peptide 1871972..1872034 /locus_tag="Alide2_1775" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 21" misc_feature 1872269..>1872589 /locus_tag="Alide2_1775" /note="Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of...; Region: LamG; cl00102" /db_xref="CDD:193659" gene 1872692..1873531 /locus_tag="Alide2_1776" /db_xref="GeneID:10482814" CDS 1872692..1873531 /locus_tag="Alide2_1776" /inference="similar to AA sequence:KEGG:Bcep1808_7486" /note="KEGG: bvi:Bcep1808_7486 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387679.1" /db_xref="GI:330824376" /db_xref="GeneID:10482814" /translation="MTRTRRNLLLVTGFLLLAAAGTWAAFRFLIGEAPPAQPEYLPQT GAAPAPAVPRPTGPVRQADGTLRFDFEAETVGAEPKSIVPAVGQWLTGVDGERRVLVV DGRGWARGQAAAGLADKARALYGERYAEFLDNVQAYAYFPLAVAQGIEDFRSGEIELA FKCVAGRIDQAAGIVFDLKPNGDYLVLRANCLEDNLVLFKYEQGKRSSVQWVRNTPTP TGPWHSLKLVAADRRVEGWLNGQRQLEHELPAPFSGRVGVWSKADSVMYFDRYLVREA GRR" sig_peptide 1872692..1872766 /locus_tag="Alide2_1776" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.888 at residue 25" misc_feature 1873148..>1873453 /locus_tag="Alide2_1776" /note="Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of...; Region: LamG; cl00102" /db_xref="CDD:193659" gene complement(1873558..1873887) /locus_tag="Alide2_1777" /pseudo /db_xref="GeneID:10482815" gene 1874184..1874744 /locus_tag="Alide2_1778" /db_xref="GeneID:10482816" CDS 1874184..1874744 /locus_tag="Alide2_1778" /inference="protein motif:TFAM:TIGR03748" /note="TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: tmz:Tmz1t_0968 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein PilL" /protein_id="YP_004387680.1" /db_xref="GI:330824377" /db_xref="InterPro:IPR022260" /db_xref="GeneID:10482816" /translation="MGCHMPPSLPRFLCIFAVLSGLLSGCTTTPATPDHIEAPPDEPA SGQRLVPVARYGRYTLVELVPEPAQRDLLQQAVEVSIPPMLDASVGDAMRHVLLRSGY RLCDAAEAATLYALPLPAAHLRLGPLMLRDALLTLAGPAWELSVDDLTRQVCFSRHGA STFLSANPPGTATPVPDADRPEEMQP" misc_feature 1874343..1874648 /locus_tag="Alide2_1778" /note="conjugative transfer region protein, TIGR03748 family; Region: conj_PilL" /db_xref="CDD:163460" gene 1874741..1875388 /locus_tag="Alide2_1779" /db_xref="GeneID:10482817" CDS 1874741..1875388 /locus_tag="Alide2_1779" /inference="similar to AA sequence:KEGG:Mpe_A2376" /note="KEGG: mpt:Mpe_A2376 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387681.1" /db_xref="GI:330824378" /db_xref="GeneID:10482817" /translation="MTFPQAPSERNSRTRWLKIAAAFWLLLISAVALINSVGLSRLAE QTQSSAQDAQVKALGLRVADLERQADADKRRPAPIGQAEFATARQALDERMTRLEEAD ETRALAVDLQTLQARVNGIETRLEKTRQVASAARPRVLVSTKPKVPEPPFRVLGVELR GGERFLSITSIAAASLAGARLLREGDAEGDWQLQSIEAQAGVFQVNGQTQRIAVP" sig_peptide 1874741..1874872 /locus_tag="Alide2_1779" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.818) with cleavage site probability 0.600 at residue 44" gene 1875398..1876117 /locus_tag="Alide2_1780" /db_xref="GeneID:10482818" CDS 1875398..1876117 /locus_tag="Alide2_1780" /inference="protein motif:TFAM:TIGR03759" /note="TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: ajs:Ajs_2211 putative secreted protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387682.1" /db_xref="GI:330824379" /db_xref="InterPro:IPR022293" /db_xref="GeneID:10482818" /translation="MILRSLLAAVALFTAFGASAQPAPVTNSRMVPAQVQPGADAALD ERQAREWGLHSEEWARYRQLMQGPLGVYSPQLDPLTALGIEARSEEERRRYAELQVQA EARRVGKTLAYQRAYDAAWQRLFPGQPRVSLPGAKAQGAGNTGSGRLAVFVKADCAPC AQRVQRLQAAGTAFDLYMVGSRQDDARIRQWATQAGIDPARVRARTITLNHDAGRWLS LGLPGELPAVVREVNGQWQRQ" sig_peptide 1875398..1875460 /locus_tag="Alide2_1780" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 21" misc_feature 1875515..1876108 /locus_tag="Alide2_1780" /note="integrating conjugative element protein, PFL_4693 family; Region: conj_TIGR03759" /db_xref="CDD:163471" gene 1876102..1876722 /locus_tag="Alide2_1781" /db_xref="GeneID:10482819" CDS 1876102..1876722 /locus_tag="Alide2_1781" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase-like, catalytic; KEGG: mpt:Mpe_A2378 hypothetical protein" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic subunit" /protein_id="YP_004387683.1" /db_xref="GI:330824380" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10482819" /translation="MAAAIGTPGRERRPSRVAIRCTGAVLLLATGGWALAALAREVPP PAYRLAAHRADVPAAVLYAVALQESGAMLRGRLIPWPWTLNVAGTPQRYATRAEACAG LRRALARTPANRIDAGLGQVNLGYHTHRYTQPCELLDPYRNLAIAAEILHEQHTPGED WLLAIGRYHRPAGGAPAARYRRSVHRHLTRVLDPGVPVPTLQATTP" sig_peptide 1876102..1876221 /locus_tag="Alide2_1781" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.803) with cleavage site probability 0.793 at residue 40" gene 1876719..1877252 /locus_tag="Alide2_1782" /db_xref="GeneID:10482820" CDS 1876719..1877252 /locus_tag="Alide2_1782" /inference="protein motif:TFAM:TIGR03765" /note="TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: mpt:Mpe_A2379 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387684.1" /db_xref="GI:330824381" /db_xref="InterPro:IPR021300" /db_xref="GeneID:10482820" /translation="MNHIVHIAAIGLLSTTTVFAQTVSAPLIVVEDRGGDSALPYYQS LNPQPDQATPPAPMPAPRVGNAADAEAAMLPVRSTQLSPGEVQRRVIRAPGLTALFLI GDDERSRAWLRQRQATLRELQAVGLVINVESMAALTALRRLAPGLTLSPASGDDLAQR LGLRHYPVLITSTGVEQ" sig_peptide 1876719..1876781 /locus_tag="Alide2_1782" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.947 at residue 21" misc_feature 1876806..1877246 /locus_tag="Alide2_1782" /note="Protein of unknown function (DUF2859); Region: DUF2859; cl12633" /db_xref="CDD:164343" gene 1877261..1879417 /locus_tag="Alide2_1783" /db_xref="GeneID:10482821" CDS 1877261..1879417 /locus_tag="Alide2_1783" /inference="protein motif:TFAM:TIGR03743" /note="KEGG: tmz:Tmz1t_0963 hypothetical protein; manually curated; TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1" /codon_start=1 /transl_table=11 /product="conjugative coupling factor TraD" /protein_id="YP_004387685.1" /db_xref="GI:330824382" /db_xref="InterPro:IPR022458" /db_xref="InterPro:IPR022503" /db_xref="GeneID:10482821" /translation="MAQPHAVEVLLRPAVELHTVAVCTGAAILCLVAPWSLALNPLLG LGSALAFLTFGAIRLRDAWAILRYRRNIRRLPRYVMTSRDVPVSQQRLFVGRGFRWEQ RHTHRLMQTYRPEFRRYVEPTAIYRAARRLEERLEFAPFPVSTLARALAWDSPLNPAR PLPPVGGMPRLHGIEPHEVDVTLPLGERVGHTLVLGTTRVGKTRLAELFITQDIRRKV RGEHEVVIVFDPKGDADLLKRMYVEAKRAGREGEFYVFHLGWPDISARYNAVGRFGRI SEVATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPDYLLIQRHVINIDALF IEYAQHYFAKNEPKAWEVIVQLEGKLNDKNIPRNMIGREKRVVALEQYLSQVRIYDPV LDGLRSAVRYDRTYFDKIVASLLPLLEKLTTGKIAQLLAPNYSDLSDPRPIFDWMQVI RKRAVVYVGLDALSDAEVAAAVGNSMFSDLVSVAGHIYKFGIDDGLPGAAVGAKIPIN VHADEFNELMGDEFIPMVNKGGGAGVQVTAYTQTLSDIEARIGNRAKAGQVVGNFNNL FMLRVRETATAELLTRQLPQVEVYATALMSGATDSSDPHGNTAFTSNTQDRISSNSVP LIEPAHVVALPKGQCFALTEGGNLWKVRMPLPAPDPDEAMPKDLQELAGYMRQHYVEA GDWWENQGIPGLQDKALPDDLLDDFKQMAAAEEAEA" misc_feature 1877279..1879228 /locus_tag="Alide2_1783" /note="conjugative coupling factor TraD, SXT/TOL subfamily; Region: SXT_TraD; TIGR03743" /db_xref="CDD:163455" misc_feature 1877279..1879228 /locus_tag="Alide2_1783" /note="TraM recognition site of TraD and TraG; Region: TraG-D_C; cl14888" /db_xref="CDD:196849" gene 1879414..1880163 /locus_tag="Alide2_1784" /db_xref="GeneID:10482822" CDS 1879414..1880163 /locus_tag="Alide2_1784" /inference="protein motif:TFAM:TIGR03747" /note="TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: mpt:Mpe_A2381 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element membrane protein" /protein_id="YP_004387686.1" /db_xref="GI:330824383" /db_xref="InterPro:IPR022266" /db_xref="GeneID:10482822" /translation="MSDPAVAAQRQQQRQQGLIAGLVTLPFRFFGVLCGALLLCILIE CVGMHFFWPEQGWRHAQGMLHYELDQLSTHFTRSALVQEPGRTAHRLVEQGYDWLFVK SGLLDWIRDASAQASAGSHRPTKDFRYYIGLVYVNVESYLIAAAYTTLVFLVRLLVLC LTLPLFLMAAFVGLVDGLVRRDIRRFGAGRESGFIYHRARASLIPLAVLPWVTYLALP VSVNPLLILLPSAALLGVAVCIAAATFKKYL" misc_feature 1879462..1880160 /locus_tag="Alide2_1784" /note="integrating conjugative element membrane protein, PFL_4697 family; Region: conj_TIGR03747" /db_xref="CDD:163459" gene complement(1880209..1882836) /locus_tag="Alide2_1785" /db_xref="GeneID:10482823" CDS complement(1880209..1882836) /locus_tag="Alide2_1785" /inference="similar to AA sequence:KEGG:Clim_0127" /note="KEGG: cli:Clim_0127 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387687.1" /db_xref="GI:330824384" /db_xref="GeneID:10482823" /translation="MQKPAAQQKTVLETILDWSKDRPLWQRDALRRIIANGRLTDADI GELVDLCKQGKGAPVGALKAVPLEKAHLPANPGQTAAVSLLSIADVTGVNNLAAGQTL GLEPNGITIIYGDNGAGKSGYARILKRACRARHAGKIEPNVYADQPPKRVGANIEYGV GGVPQPVEQWQNGANPHATLSAVSVFDSDCASVHIREKNEVAFRPFGLDVPDELAAAC QAVKDALAAEQKQLEKARNPIFAAPTWKATTAVGKALAALNANTDAKKIEALAALSAD ESVRLERLREDLSKNPTKAAAEQAVKADNVMRLITAVKSVAAKTTDEELLAAAALARD ARSKRGAARLAAEKAFTGEPLAGVGGETWRALWDSARRYSTEIAYPGQPFPPSAEDAH CMLCQQPLEAEARTRMVRFEDFIQKDTEQLAREAEKAAQTARQTIAAGAIGTRAVKAS LDELGLQNEVLQQQTRRFIAAARLRRHVLLKALGGNGEVQLPPVPPSPLPDLGQLQTT IRDYAAELRKSADADERKKLEADFAELSDRALLAGMLPVVTDEIQRLKTIRFLTECAG DTATNTITKMGNDIADTVITPRLRDRFQEEIVRLAASKVRVEIVRSGGKYGSPQYQVR LFAKPDAKVHEILSEGEKTCVALAAFMTELATAMHRSALVFDDPVSSLDHRWRGQVAK RLVEEAENRQVIVFTHDLVFVNDLNDHATKTGRAVRLTTLSRGAAGAGMVADGLPWKA QSVEDRIDKLEKAARAAKLLHDNNQEDEYAVEVAKLYNALRATWERGLEDIAFVRVIQ RHRDYINAKDLKKVSALTEADCDAFAAGFKKCCDIVDAHDPSSGRNAAPPPPTDLFQD IQALKDWAASLRDRQKKIA" misc_feature complement(1880707..>1881060) /locus_tag="Alide2_1785" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1881055..1881060) /locus_tag="Alide2_1785" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1880899..1880928) /locus_tag="Alide2_1785" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1880836..1880853) /locus_tag="Alide2_1785" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1880818..1880829) /locus_tag="Alide2_1785" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1880737..1880757) /locus_tag="Alide2_1785" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(1882947..1885685) /locus_tag="Alide2_1786" /db_xref="GeneID:10482824" CDS complement(1882947..1885685) /locus_tag="Alide2_1786" /inference="protein motif:PFAM:PF04851" /note="PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: eba:ebA2417 hypothetical protein" /codon_start=1 /transl_table=11 /product="type III restriction protein res subunit" /protein_id="YP_004387688.1" /db_xref="GI:330824385" /db_xref="GO:0003677" /db_xref="GO:0005524" /db_xref="GO:0016787" /db_xref="InterPro:IPR006935" /db_xref="GeneID:10482824" /translation="MNARVLHAVTGRLSLRPPQAESLIKLVRALNAAPELLGHERDVS AILSTLKAEFSTLEDFEREFPSLCFALATGVGKTRLMGAFIAYLHLAHGINNFFVLAP NLTIYNKLITDFTRNTPKYVFKGIAEFAQQPPLIITGDNYDQTGAAVDEQSMGFAHDV RINIFNISKINSEVRGGKEPRIKRMKEVLGDSYFNHLASLSDLVLLMDESHRYRASAG VRSINELKPLFGLEVTATPFVESSRGPVPFKNVVMDYPLARAMEDGFVKEPAVVTQRN FDAKAHTPEEIEKTKLEDGVRLHETTKVELLTYARENGVKPVKPFMLVIARDTTHAGQ LLALLESEAFYEGRYQGKVIQVDSSRTGAEEEEMITRLLAVESVDEPTEIVIHVNMLK EGWDVTNLYTIVPLRAANARTLIEQSIGRGLRLPYGKRTGVASVDRLNIVAHDKFQEI IDEANRGDSPIRLKQVILDAPSADDKKVSVQVESGAAARLGLTEAPVVITGASATDSG AEVPAPKPVFTTEAEKQAARVVMDVIGKYEVKRDLVPTSSALLKPEVQKEILAEVAER LKPLQGELLAGVDESVPALDLSAVVAKTTEIVVQQTIDIPRIAVVPTGEVTTGFHAFK LDVSQLHLQPGQREIVGQMLRTNEQFTLAAEVGLKEQRPEDYIVHALVDFDDVDYFTH ADLLYDLAGQMVQHLRSYLSEDEAISVLDRDRRLIAREIHAQMMAHFWEEATEYEVQV SRGFTELRPCNYTATAGQTAHHFRETVTETSRIKQMLFGGFARCLYPLQKFDSDTERR FAIILERDATKWFKPAKGQFQIYYKLGTEQPEYIPDFVAETDATILMVETKARADINT QEVQAKAAAAMRWCKHASDHAANVGTKPWKYLLVPHDEVSESKRLADYLRFEVKAN" misc_feature complement(<1885344..1885502) /locus_tag="Alide2_1786" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl14882" /db_xref="CDD:197446" misc_feature complement(<1884414..1885481) /locus_tag="Alide2_1786" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3421" /db_xref="CDD:33227" misc_feature complement(1884972..>1885082) /locus_tag="Alide2_1786" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl14882" /db_xref="CDD:197446" misc_feature complement(<1884279..>1884515) /locus_tag="Alide2_1786" /note="type III restriction-modification system StyLTI enzyme res; Provisional; Region: PRK15483" /db_xref="CDD:185380" gene complement(1885685..1887391) /locus_tag="Alide2_1787" /db_xref="GeneID:10482825" CDS complement(1885685..1887391) /locus_tag="Alide2_1787" /inference="protein motif:PFAM:PF01555" /note="PFAM: DNA methylase N-4/N-6; KEGG: bpm:BURPS1710b_3656 adenine specific DNA methylase Mod" /codon_start=1 /transl_table=11 /product="DNA methylase N-4/N-6 domain-containing protein" /protein_id="YP_004387689.1" /db_xref="GI:330824386" /db_xref="GO:0003677" /db_xref="GO:0008170" /db_xref="InterPro:IPR002941" /db_xref="GeneID:10482825" /translation="MSKQKLELTWIGKEKRPKLEPRILLEDPEKSYHAKHRVTDGDIF DNRLIFGDNLLALKALENEFSGEVKCVFIDPPYNTGSAFAQYDDGLEHSIWLGLMRDR LELIRRLLSDEGSLWITIDDNEAFYLKVLCDEVFGRSNFVSSIVWAKRVSPANDAKYF SSDHDFVLVYAKNKPLWKPNRLPRTEGQNSYYKNPDNDSRGPWNSVTYTGNKTREERP NLYYPIVNPNTGEQVFPPETLTWRYGKDTHAENEKKNLLYWGKDGKSKVPRLKMFLEN AEPVVPRTIWPASEAGSTQSAMTEQKVLFATPFATPKPEALLQRILHIASKEGDIVLD SFAGSGTTGVVAHKMGRRWIMVELGEHCQTHIIPRIKKVIDGEDKGGISEAVSWQGGG GFRYYRLAPSLIVNDRWGNPVINPEYNAAMLAEALAKLEGFTYAPSETHWWQHGHSSE RDFIYVTTQNISAEQLQALSGEVGPEQSLLVCCAAFHGVTAAKAAERWPNLTLKKIPK MVLARCHWGRDDYSLNVTNLPMAEIEKAEPAASGNGAKNIKSRKAALANAGQSGLFGE NE" misc_feature complement(<1886708..1887190) /locus_tag="Alide2_1787" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" misc_feature complement(1886309..>1886611) /locus_tag="Alide2_1787" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1887402..1889192) /locus_tag="Alide2_1788" /db_xref="GeneID:10482826" CDS complement(1887402..1889192) /locus_tag="Alide2_1788" /inference="protein motif:PFAM:PF10592" /note="PFAM: Abortive phage infection; KEGG: pph:Ppha_0341 hypothetical protein" /codon_start=1 /transl_table=11 /product="abortive phage infection protein" /protein_id="YP_004387690.1" /db_xref="GI:330824387" /db_xref="InterPro:IPR018891" /db_xref="GeneID:10482826" /translation="MPALEPQYLAILKQVLAARFVPFLPPLLGNVNPADHAAKQLSRA FSAFVLHKLLDITPQVAAASVVDDFNDKGIDAIHYHAPSETLYLLQTKLKESEQFKQE DALPFCEGIRLLLKQDFAAFNGNVQNRKTDIEGALDVCSHIKLVVPYTGDGVSQAARD ALQALLDDEDLDEERLAKQVEYYTATEIVCDLLAEQAYQPVHTDIALHKHAKVESPRA TYYGVARLADLVTLHQMHGKALYERNIRYFLGSSKSDVNKAIKTTLHDAPLDFFYLNN GVTAVCDQIEPKANKNGVKKFKVRGLSIINGAQTVASAAEFVRQHPGKSIDDAKVMLT LIKASADGQFGKSVTKARNHQNPVQTANFASLDENQERLRQEIAHLGFGYHYRPEAVA NGTNAITLDEALRALASQQNDPRYAVWLKSEPVRLATPDSAEYQALFTVALPGVTLVN AVLCHRAIRTLVVDYEQKAPARSQERLIYRHGLHVITAVMVKRLRSRIGTAAVIDPTA IPALISQPLDQLRQQAFDLGQQRLILEGPLAYFRNQGNVVNFLADLMEAHFALGADPA IAPLRNIQNAADAYPRKRLIDYLSNRAPQL" misc_feature complement(<1887837..1888472) /locus_tag="Alide2_1788" /note="AIPR protein; Region: AIPR; pfam10592" /db_xref="CDD:151122" gene complement(1889192..1891390) /locus_tag="Alide2_1789" /db_xref="GeneID:10482827" CDS complement(1889192..1891390) /locus_tag="Alide2_1789" /inference="protein motif:PFAM:PF00082" /note="PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: alv:Alvin_2786 peptidase S8 and S53 subtilisin kexin sedolisin" /codon_start=1 /transl_table=11 /product="peptidase S8 and S53 subtilisin kexin sedolisin" /protein_id="YP_004387691.1" /db_xref="GI:330824388" /db_xref="GO:0004252" /db_xref="InterPro:IPR000209" /db_xref="GeneID:10482827" /translation="MAEDVGGFDDRKLLKIRLRAGDKSVPAFDAIPGVEIVSQEDESI VLAFATDDGLSEFESRLATLARDGVVTRKELFYVIEDFDHWTPQDRTGAALLEQGFPA APTFMLDVELWPQERQDKRQQMVRAFLDWLHAQGIERLDDIQQPSLVMVRVRCNGAQA EQILHHRDVRTADLPPRLGVAVQLLHTDINQFPPIDPPSDDAPSIAVLDSGLTRGHSL LGAAVGDAQGYLAPHRSADDTDPHWHGTFVGGLALYGDVHGVIQQGQFVPQLRLFSGK VFEDDGQDQTEFVEKAVEEAVRELHAQYGCRVFNLSYGDLNKVYDGRHVRGLAYTLDR LTRELGVLFVVPAGNLLSSQLPADTRASYPDYLFEGHARLLDPATSLNALTVGGLSLN EATRNAQRHPNTIEDHVLARAEQPFPLTRSGPSASGAIKPDVVAHAGNIALRRTGGGT DHAGLGVVSLNGGFALGPAFKEDIGTSYAAPQVAHQAARLLAEVPDASPSLLRALIGA HARWPQACEALLNPGNNAEGRDKLLRLVGYGRVDDAALFRSLDHTVTLLAEERVGNDQ HHFFELPLPDSFWDGGRRTREVTVALAYSPAVRTTRLDYRRAKLWFHLVTAGSLDEVT QAYRRNREEGMGERANGRWLPNDTRKNGTLQVSRWRFKQALANGHKVFVVVTRQDSLW SDGRDGDEPYAVAVVLADREQANAQLYAQVQAALQARAQARARARIGGRA" misc_feature complement(1889858..1890772) /locus_tag="Alide2_1789" /note="Peptidase S8 family domain in Subtilisin-like proteins; Region: Peptidases_S8_Subtilisin_like_2; cd04847" /db_xref="CDD:173793" misc_feature complement(order(1889960..1889962,1890344..1890346, 1890452..1890454,1890500..1890502,1890659..1890661, 1890764..1890766)) /locus_tag="Alide2_1789" /note="active site" /db_xref="CDD:173793" misc_feature complement(order(1889960..1889962,1890659..1890661, 1890764..1890766)) /locus_tag="Alide2_1789" /note="catalytic triad [active]" /db_xref="CDD:173793" gene complement(1891555..1892541) /locus_tag="Alide2_1790" /db_xref="GeneID:10482828" CDS complement(1891555..1892541) /locus_tag="Alide2_1790" /inference="protein motif:PFAM:PF00004" /note="KEGG: alv:Alvin_2785 AAA ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="AAA ATPase central domain-containing protein" /protein_id="YP_004387692.1" /db_xref="GI:330824389" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="GeneID:10482828" /translation="MASGKLLRQLIKSGTQGDASGFRAASEAVIKEEREKNHHLLAND LERLLYGDQATVGKSARKLQSLPSVPTNKDNGLALLEERAVIREEKDIILSDASQSAL DEILMEHNRTDVLRSYGLQPAQKLLFCGPPGCGKTLAAEVIAHSLSMPLILVRLDSVI SSFLGETAANLRKVFDYVATHPVVALFDEFDALTKDRGDSADHGELKRSVNAVLQMMD GYRGESILIATTNYETLLDKAVWRRFDEVVRFEMPNLEQIKRLLALKLSGVRRNFEPD DGQVASVFKGMSHADIERVLRRSVKEMILSGREFLEKSHLDTALAREYRHKS" misc_feature complement(1891576..>1892469) /locus_tag="Alide2_1790" /note="ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]; Region: SpoVK; COG0464" /db_xref="CDD:30812" misc_feature complement(1891789..1892205) /locus_tag="Alide2_1790" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(1892131..1892154) /locus_tag="Alide2_1790" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(1891852..1891854,1891978..1891980, 1892128..1892151)) /locus_tag="Alide2_1790" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(order(1891975..1891986,1891990..1891995)) /locus_tag="Alide2_1790" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(1891813..1891815) /locus_tag="Alide2_1790" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(1892622..1895501) /locus_tag="Alide2_1791" /db_xref="GeneID:10482829" CDS complement(1892622..1895501) /locus_tag="Alide2_1791" /inference="protein motif:PFAM:PF00176" /note="manually curated; PFAM: SNF2-related; Helicase, C-terminal; KEGG: tbd:Tbd_0933 DEAD/DEAH box helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal" /codon_start=1 /transl_table=11 /product="SNF2-like protein" /protein_id="YP_004387693.1" /db_xref="GI:330824390" /db_xref="GO:0003676" /db_xref="GO:0003677" /db_xref="GO:0004386" /db_xref="GO:0005524" /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR014001" /db_xref="GeneID:10482829" /translation="MTTQQLLTPHQSQYFAWLLTRRAAGDSVESLASTLVDSQVDLNP HQVEAALFACRNPLSRGVILADEVGLGKTIEAGLVISQRWAERRRKVLIIVPANLRKQ WHQELQDKFGLQGLILEAKSYNAIRKQEQRNPFLFASGPIICSYQFAKAKADDVKGID WDLVVLDEAHRLRNVYKTSNVIAKTLKEALSRVHSKALLTATPLQNSLLELYGLVSFI DDRVFGDLDSFRSQFTGREQSFSSLRDRLAPICKRTLRKQVQPYVSYTARKAIVEEFT PSSEEQELSRLVADYLRRPNLKALPEGQRQLISLVLWKLLASSTHAIAGALETMAKRL QGVLNETPVVADLAEELDEDYESLDETAEEWEDQEQGTKAASRAERDAIAQEIEELRH FRTLATNIRDNAKGKALLTALDRAFAELDRLGASRKAIIFTESKRTQEYLLNLLADTP YGDGIVLFNGTNSDQRAQAIYKDWLKRHEGTDRITGSKTADTRAALVEHFKERGKVMI ATEAGAEGINLQFCSLVINYDLPWNPQRIEQRIGRCHRYGQKHDVVVVNFVDRSNEAD ARVYELLSQKFQLFEGVFGASDEVLGAIGSGVDFERRIAEIYQNCREPEEIKSSFEQL QLDLSGEINEAMVKTRQVLLENFDEEVQEKLRMRADDSRNARNRFERMLMDLTRAELV HCAAFDDDGFDLRRMPTGIEHSGLAGIELGRYELPRRSGDAHLYRINHPLARWGIEQA KARALDGARLVFDYHAHGAKISTLEAWRGKAGWLTVKLISVETLGNQEQHLLVAAGTT DGVVLAEEDPEKLLRLPATTQAASLFNAPDATLLADVEARKTALLRDVNERNLGYFEQ EVQKLDAWADDLKLGLEQEIKEIDREIKEVRRTAATSPTLEEKLSWQKKQRELEGKRS KLRRELFARQDEVEAQRNDLISQLEVQLQQQVEERTLFTVEWELV" misc_feature complement(1894839..1895378) /locus_tag="Alide2_1791" /note="DEAD-like helicases superfamily; Region: DEXDc; smart00487" /db_xref="CDD:128763" misc_feature complement(1894893..1895324) /locus_tag="Alide2_1791" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature complement(1895283..1895297) /locus_tag="Alide2_1791" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature complement(1894992..1895003) /locus_tag="Alide2_1791" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature complement(1893834..1894298) /locus_tag="Alide2_1791" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature complement(order(1893966..1893974,1894044..1894046, 1894089..1894091,1894191..1894202)) /locus_tag="Alide2_1791" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(<1893543..>1894031) /locus_tag="Alide2_1791" /note="ATP-dependent DNA helicase RecQ; Region: recQ; TIGR01389" /db_xref="CDD:130456" misc_feature complement(order(1893864..1893866,1893873..1893875, 1893885..1893887,1893948..1893950)) /locus_tag="Alide2_1791" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene complement(1895560..1895760) /locus_tag="Alide2_1792" /db_xref="GeneID:10482830" CDS complement(1895560..1895760) /locus_tag="Alide2_1792" /inference="protein motif:TFAM:TIGR01764" /note="KEGG: ajs:Ajs_2531 phage transcriptional regulator, AlpA; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory" /codon_start=1 /transl_table=11 /product="excisionase family DNA binding domain-containing protein" /protein_id="YP_004387694.1" /db_xref="GI:330824391" /db_xref="GO:0003677" /db_xref="InterPro:IPR010093" /db_xref="InterPro:IPR010260" /db_xref="GeneID:10482830" /translation="MSEVESEILTLEEVAAYLKAGKRTVYRLAQKGEIPAFKLGGTWR FRRSELDRWIAESINKKKPEAE" misc_feature complement(1895593..1895739) /locus_tag="Alide2_1792" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene 1895984..1896349 /locus_tag="Alide2_1793" /db_xref="GeneID:10482831" CDS 1895984..1896349 /locus_tag="Alide2_1793" /inference="protein motif:TFAM:TIGR01690" /note="KEGG: tmz:Tmz1t_0956 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387695.1" /db_xref="GI:330824392" /db_xref="InterPro:IPR019110" /db_xref="GeneID:10482831" /translation="MGQTNRRTSARPALAVVLAVSFSALQPAAAADSLASEREQLAAL TRQLDLIDRLAEHAANTAPQERTRYHFDYARLRADLNRVRAGLQDYLVPQRAQPRDPV PLAGDYVRRDRADDEEPSP" sig_peptide 1895984..1896076 /locus_tag="Alide2_1793" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.917 at residue 31" misc_feature <1896092..1896307 /locus_tag="Alide2_1793" /note="Plasmid protein of unknown function (Plasmid_RAQPRD); Region: Plasmid_RAQPRD; cl09893" /db_xref="CDD:164164" gene 1896346..1896585 /locus_tag="Alide2_1794" /db_xref="GeneID:10482832" CDS 1896346..1896585 /locus_tag="Alide2_1794" /inference="protein motif:TFAM:TIGR03758" /note="TIGRFAM: Protein of unknown function DUF3262; KEGG: ajs:Ajs_2193 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387696.1" /db_xref="GI:330824393" /db_xref="InterPro:IPR021676" /db_xref="GeneID:10482832" /translation="MTPSADQVAAFQANGGFAPSAVSAVVLGFVLAVLLLWGVWAMRT AYVGWAEHRITERQFLAVVVRFVAMYLVLTFFLLS" misc_feature 1896352..1896579 /locus_tag="Alide2_1794" /note="Protein of unknown function (DUF3262); Region: DUF3262; cl13160" /db_xref="CDD:164348" gene 1896608..1896976 /locus_tag="Alide2_1795" /db_xref="GeneID:10482833" CDS 1896608..1896976 /locus_tag="Alide2_1795" /inference="protein motif:TFAM:TIGR03745" /note="TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: tmz:Tmz1t_0954 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element membrane protein" /protein_id="YP_004387697.1" /db_xref="GI:330824394" /db_xref="InterPro:IPR021356" /db_xref="GeneID:10482833" /translation="MNTPLTSHRIPSRIAAPLLPLALAGLPLSAFAQGLPTMEDPSRG QGSGILQTLQNYGYDIVLLIALLVVASMFVGVCYHAYTRYSEIHTGRATWGQFGLTVA VGAILLVVGIWLLTKATGVL" sig_peptide 1896608..1896706 /locus_tag="Alide2_1795" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 33" misc_feature 1896707..1896973 /locus_tag="Alide2_1795" /note="Protein of unknown function (DUF2976); Region: DUF2976; cl12739" /db_xref="CDD:164344" gene 1896989..1897399 /locus_tag="Alide2_1796" /db_xref="GeneID:10482834" CDS 1896989..1897399 /locus_tag="Alide2_1796" /inference="protein motif:TFAM:TIGR03750" /note="TIGRFAM: Protein of unknown function DUF3487; KEGG: ajs:Ajs_2191 hypothetical protein" /codon_start=1 /transl_table=11 /product="conjugative transfer region protein" /protein_id="YP_004387698.1" /db_xref="GI:330824395" /db_xref="InterPro:IPR021877" /db_xref="GeneID:10482834" /translation="MAVPSETPQDTLVSFLPHRLNRQPVVVRGLTADELWICAGLSAA AGFALGLPLAWLTHSIAMVPTLIVAGIALGVFVGGGFLRAQKRGRPDTWLYRQLQWRL ALRHPALAALLGGQRLITRSGYWTTRRNADRVAP" misc_feature 1897016..1897396 /locus_tag="Alide2_1796" /note="Protein of unknown function (DUF3487); Region: DUF3487; cl13432" /db_xref="CDD:164351" gene 1897396..1898088 /locus_tag="Alide2_1797" /db_xref="GeneID:10482835" CDS 1897396..1898088 /locus_tag="Alide2_1797" /inference="protein motif:TFAM:TIGR03746" /note="TIGRFAM: Protein of unknown function DUF2895; KEGG: mpt:Mpe_A2390 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387699.1" /db_xref="GI:330824396" /db_xref="InterPro:IPR021548" /db_xref="GeneID:10482835" /translation="MSRFKNEVAHLQAHVMTLRLGAGALFVVALLLGFGWWSAPKSLT IHVPPDLRSGSTRKWWDVPPESVYAFSFYIWQQVQRWPTNGEEDYPRNLRALSAYLTP SCRAFLQQDYEYRRASGELRQRVRGIYEIPGRGYGDDPATRVKVVSDRDWIVTLDVSA DEYYGSEQVKRALVRYPIKVVRLDIDPERNPFGLALDCYASAPQRIEPPPTPTQAGVP ANAPGHLQGDSP" misc_feature 1897405..1898019 /locus_tag="Alide2_1797" /note="Protein of unknown function (DUF2895); Region: DUF2895; cl12968" /db_xref="CDD:196490" gene 1898085..1898999 /locus_tag="Alide2_1798" /db_xref="GeneID:10482836" CDS 1898085..1898999 /locus_tag="Alide2_1798" /inference="protein motif:TFAM:TIGR03749" /note="TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: ajs:Ajs_2189 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387700.1" /db_xref="GI:330824397" /db_xref="InterPro:IPR021844" /db_xref="GeneID:10482836" /translation="MKPVALSALAGVLLILGVVPASQAVEILRWERLPLPVPLVVGQE RVVFIDRNVRVGVPASVGDHLRVQSAGGAIYLRASDPIPPTRLQLQDVESGALILLDI AAEPAKDSQAPLEPVRIVEAEAPAKRYGGSAASGADERADAPADKPVPRRETPVPVVL TRHAAQNLYAPLRTVEPVAGIGRVNLRRGLALSTLLPTLPVHARALAAWRLEDQWVTA VRLTNTSARWLDLDPRALQGNFVAATFQHPNLGPAGTASDTTVLYLVTRGHGLAESLL PALSPIDASVNLPPAAAAGSTGGARDEK" sig_peptide 1898085..1898159 /locus_tag="Alide2_1798" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.878 at residue 25" misc_feature 1898148..1898933 /locus_tag="Alide2_1798" /note="Protein of unknown function (DUF3438); Region: DUF3438; cl13372" /db_xref="CDD:196586" gene 1898989..1900422 /locus_tag="Alide2_1799" /db_xref="GeneID:10482837" CDS 1898989..1900422 /locus_tag="Alide2_1799" /inference="protein motif:TFAM:TIGR03752" /note="TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: mpt:Mpe_A2392 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387701.1" /db_xref="GI:330824398" /db_xref="InterPro:IPR021207" /db_xref="GeneID:10482837" /translation="MKSNPLLKWLLIPMALLLVFVGIKLFSGAPGGQPASKGAASTLT PEEMKALGIAGDTPRDTVATLVAQVKQLRTELQSALGDNKQHKAENERLRARESAIDQ RIQSALEGERNRLEQERNQVASDRQQTQGLLQDLQRQLDGLSGKGGPSDLPVGLGLEE GDGQRFNRGVGGTQWVEPDDAKVDAKNASKEPSFPLSFGPAQKSLSAAVESVADVGSR AVGASTKAVYTVPSNSTLMGSIAMTALIGRVPIDGTVNDPYPFKVLIGPDNLTANGID IPDVAGAVVSGTASGDWTLSCVRGQIRSVTFVFQDGTIRTVPEDSSKGGSSGGNAGHN GASIQGGLGWISDPYGIPCVSGERRSNAQQYLGSQALITAAGAGAASLIKSDNGSVAV VANSNGSLGTVGISGNEAMGRILAGGVRDMADWVNKLYGQAFAAVYVQPGARVAVHLE QPLDIDYDAKGRRVHHRTGEAHASDLD" misc_feature 1898992..1900389 /locus_tag="Alide2_1799" /note="integrating conjugative element protein, PFL_4705 family; Region: conj_TIGR03752" /db_xref="CDD:188383" misc_feature <1899166..1899342 /locus_tag="Alide2_1799" /note="Protein of unknown function (DUF904); Region: DUF904; cl11531" /db_xref="CDD:187092" gene 1900403..1900837 /locus_tag="Alide2_1800" /db_xref="GeneID:10482838" CDS 1900403..1900837 /locus_tag="Alide2_1800" /inference="protein motif:TFAM:TIGR03751" /note="TIGRFAM: Conjugative transfer region lipoprotein; KEGG: mpt:Mpe_A2393 hypothetical protein" /codon_start=1 /transl_table=11 /product="conjugative transfer region lipoprotein" /protein_id="YP_004387702.1" /db_xref="GI:330824399" /db_xref="InterPro:IPR022262" /db_xref="GeneID:10482838" /translation="MPRTWIDAAAVLLAATLLGGCATSKEKLLPHGDSTMLDIWHQET GGSAGGGQAARQLLDARQGLRRPLTEADVQAAPGVQARYTRTAQNEIHRQFHRLPNPD LVMYVFPHLAGTDPVPVPGYSTVFPLYQRVQYAMPGERVEDY" sig_peptide 1900403..1900477 /locus_tag="Alide2_1800" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.958) with cleavage site probability 0.874 at residue 25" misc_feature 1900472..1900825 /locus_tag="Alide2_1800" /note="conjugative transfer region lipoprotein, TIGR03751 family; Region: conj_TIGR03751" /db_xref="CDD:163463" gene 1900837..1903725 /locus_tag="Alide2_1801" /db_xref="GeneID:10482839" CDS 1900837..1903725 /locus_tag="Alide2_1801" /inference="protein motif:TFAM:TIGR03744" /note="TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: tmz:Tmz1t_0948 hypothetical protein" /codon_start=1 /transl_table=11 /product="conjugative transfer ATPase" /protein_id="YP_004387703.1" /db_xref="GI:330824400" /db_xref="InterPro:IPR022303" /db_xref="GeneID:10482839" /translation="MAWSLPWSRKGDASPADAVDAADDAWARHVTALAAQGVAEPGSA LGRGRRRPATQADHDALYGVAPSFADLLPWVEYLPGSKCMLLEDGQSVAAFFELAPVG TEGREMAWLWQARDALENALQDSFDELDDNPWVVQLYAQDEADWDNYLRSLANYLQPR AQGSAFSDFYLRFFAHHLRAIAKPGGLFEDTTVTRLPWRGQVRRVRMVVYRRTSAAPA PRRGQSPEQALTTICDRLAGGLANAGVKARRLGPADIHAWLLRWFNPNPTLLGATAED RERFYALTRYPEEREEGELELASGTDFAQRLFFGQPRSDVPNGLWFFDGMPHRVIVMD RLRTPPATGHLTGETRKGGDAMNALFDQMPEDTMMCLTLVATPQDVLEAHLNHLARKA VGETLASEQARQDVQQARGLIGSAHKLYRGALAFYLRGRDLAQLDARGLQLVNVMLNA GLQPVREEDEVAPLNSYLRWLPCVFDPAADKRQWYTQLMFAQHAANLAPVWGRSQGTG HPGITFFNRGGGPITFDPLNRLDRQMNAHLFLFGPTGSGKSATLNNILNQVTAIYRPR LFIVEAGNSFGLFGDFAARLGLTVHRVKLAPGAGVSLAPFADAWRLVDTPSQVQTLDA DALDEDQADAGMAVEGDEQRDVLGELEITARLMITGGEDKEEARMTRADRSLIRQCIL DAAQRCVAEKRTVLTRDVRDALRERARDATLPEMRRARLLEMADAMDMFCQGVDGEMF DRSGTPWPEADITIVDLATFAREGYNAQLSIAYISLINTVNNIAERDQFLGRPIINVT DEGHIITKNPLLAPYVVKITKMWRKLGAWFWLATQNLDDLPKAAEPMLNMIEWWICLS MPPDEVEKIARFRELNASQKALMLSARKEAGKFSEGVILSKSMEVLFRAVPPSLYLAM AMTEPEEKAERFQLMQQHGISELDAAFRVAEKIDRARGIEPLALDTLA" misc_feature 1900996..1903692 /locus_tag="Alide2_1801" /note="conjugative transfer ATPase, PFL_4706 family; Region: traC_PFL_4706; TIGR03744" /db_xref="CDD:163456" gene 1903739..1904482 /locus_tag="Alide2_1802" /db_xref="GeneID:10482840" CDS 1903739..1904482 /locus_tag="Alide2_1802" /inference="similar to AA sequence:KEGG:Tmz1t_0947" /note="KEGG: tmz:Tmz1t_0947 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387704.1" /db_xref="GI:330824401" /db_xref="GeneID:10482840" /translation="MRMPSFARRHPRIGLLIVATIAVASWMLLRAPHPATESMPLAAA GSEAPKPAGPPWLYGRADARFTVVGYADLECPYCRAYFPALKRWIDAHPEVNWQWHHL PLSMHEPAATAGARLAECAGETGGHAAFWQAVAWLYANTRSDGQGLPEGLRYPDLTPT MQGCLDSDRPDAVIRAQAVEAAQQGIAATPALQLRDHESGKALLLHGPVEGDALLSAI DLLAAGSTATAESAHSPDMPAGVAGDMPR" misc_feature 1903778..>1904014 /locus_tag="Alide2_1802" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:193797" misc_feature 1903937..1904185 /locus_tag="Alide2_1802" /note="DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a...; Region: DsbA_family; cd02972" /db_xref="CDD:73335" misc_feature order(1903961..1903963,1903970..1903972) /locus_tag="Alide2_1802" /note="catalytic residues [active]" /db_xref="CDD:73335" gene 1904678..1905172 /locus_tag="Alide2_1803" /db_xref="GeneID:10482841" CDS 1904678..1905172 /locus_tag="Alide2_1803" /inference="protein motif:TFAM:TIGR00608" /note="KEGG: ajs:Ajs_2184 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758" /codon_start=1 /transl_table=11 /product="DNA repair protein RadC" /protein_id="YP_004387705.1" /db_xref="GI:330824402" /db_xref="InterPro:IPR001405" /db_xref="GeneID:10482841" /translation="MSLVIADSRPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALG SPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFEPLFKGTVDQTSVYPRVVVQRAL ALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDARVLDHFIVGKGSPYSFAE AGLL" misc_feature 1904819..1905154 /locus_tag="Alide2_1803" /note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466; cd08071" /db_xref="CDD:163702" misc_feature order(1904864..1904866,1905014..1905016,1905020..1905022, 1905044..1905046,1905053..1905055) /locus_tag="Alide2_1803" /note="MPN+ (JAMM) motif; other site" /db_xref="CDD:163702" misc_feature order(1905014..1905016,1905020..1905022,1905053..1905055) /locus_tag="Alide2_1803" /note="Zinc-binding site [ion binding]; other site" /db_xref="CDD:163702" gene 1905395..1905871 /locus_tag="Alide2_1804" /db_xref="GeneID:10482842" CDS 1905395..1905871 /locus_tag="Alide2_1804" /inference="similar to AA sequence:KEGG:CAP2UW1_2945" /note="KEGG: app:CAP2UW1_2945 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387706.1" /db_xref="GI:330824403" /db_xref="GeneID:10482842" /translation="MSAVTAIQYTQDQMRTLTGVSAETVRHWRKTVPYLASKTGKAAR FTFADLLGLAVTNELVSSLGVHIATVSVGVDALFRLLSTSGALALNGSVAFVTPTSAN LCDIGPEGVGPAPAQPTLVIPLDPLIMRLQQHMLPIVPTPSQAALPFPPEAIRSRA" gene 1905868..1908831 /locus_tag="Alide2_1805" /db_xref="GeneID:10482843" CDS 1905868..1908831 /locus_tag="Alide2_1805" /inference="similar to AA sequence:KEGG:CAP2UW1_2946" /note="KEGG: app:CAP2UW1_2946 N-6 DNA methylase" /codon_start=1 /transl_table=11 /product="N-6 DNA methylase" /protein_id="YP_004387707.1" /db_xref="GI:330824404" /db_xref="GeneID:10482843" /translation="MNTATLEQVLAATGYLPDGRPAPGLRLGAEAQSSRHGRVFVPDA LWRSASSLTVYFKFEQSAPADDLVSQWRREVWNEGFAPLLWVISPQRIDLYNGFGTPA KEGDAQRHLIRRFENIEASLHELDELAGRLAIETGQFWAQVPAIDRKTSVDQKLLSDL GCLERDLVAGNLARDAAQALIGRVIFTQYLIDREIVSAARLKRVCGRTALPAILRDRP ATSKLFAWLAQTFNGDMFPPSSVKTTPAAHHLTRVAEFLEAVDPESGQLSFFPYQFDV IPVELISSIYEQFAHAEPQTGGKRTEALRNGVHYTRLSVVSLVLDEVMDGLSGRESVL DLTCGSGVFLVEALRRLVHLRSQGQPPTRELIRSTLYGQVYGVDISEAAIRVAAFSLY LAALELDPDPQPPQSLKFQPLIGRTLLVGDARTVERDGDGKAVLATPTGLKQFDLIVG NPPWSFRGQTGTEARRKTRVAGVPAQPRGEGLDFVLRAAEFSHEKTRFGIILSAMPFF SRSGTGMAAAQHVMRAVAPITLVNLSNLCSWLFATAAMPAVVLFARHRPKQRTDQVTV VQIPWTPSGARTHSFEVAPSDVITLTLDEIQEQPLKLKAAAVGRRRDLLLLDDLTSAH RNLGEQLSLLDTTFQVGLIRGAPENQTRDARPLKGLDVLQVKDMQHFNIPDDLPTFSQ SKAQWPRSREIYQAPLLIVKEMLLGSPRVLAAVSERDLVFTNSYFAVSLPRGHTRTAH LLATVLSSAFATWFFYLTAAEFGIYKRKLLARDLSFLPVPNFTSAVKSEAGQRLLQIE KNLRANGTDERGWAELDEAVFDLYELNDADRTVIRDGLLRAGWQWETGRESSVEPSDS RTEVTAYAKTFLSVIEDWLSVRNKRHMRAEVLDLPSSSALRVVRFVLEEGPGNASVSV MAPQGELGEVLARIGRRLKVKIATALSAERELRVHGRNEVVIIKPAARRYWMGIAALE DADAVVAESFSGGKV" misc_feature <1906708..>1907409 /locus_tag="Alide2_1805" /note="Type I restriction-modification system methyltransferase subunit [Defense mechanisms]; Region: HsdM; COG0286" /db_xref="CDD:30634" misc_feature 1907905..1908204 /locus_tag="Alide2_1805" /note="TaqI-like C-terminal specificity domain; Region: TaqI_C; pfam12950" /db_xref="CDD:193423" gene 1908981..1909499 /locus_tag="Alide2_1806" /db_xref="GeneID:10482844" CDS 1908981..1909499 /locus_tag="Alide2_1806" /inference="similar to AA sequence:KEGG:CAP2UW1_2947" /note="KEGG: app:CAP2UW1_2947 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387708.1" /db_xref="GI:330824405" /db_xref="GeneID:10482844" /translation="MTERLRDGMRIALKNSPWKQIMVLPGTESRSKSNVMLPDGRTDI PLAFVEIFLRTQEHDPHAIIECKRIAGSDTHLCREYVVEGMDRFIQEKYGENHAIGFM VGYVLAGVPSESADGVNAYLRRVSRSVDRLAPSDISDGTWQSLHARSKPSMPIRLQHA FLGFAGTSASRT" gene 1909643..1910086 /locus_tag="Alide2_1807" /db_xref="GeneID:10482845" CDS 1909643..1910086 /locus_tag="Alide2_1807" /inference="protein motif:TFAM:TIGR03757" /note="KEGG: ajs:Ajs_2183 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4709; PFAM: Integrating conjugative element protein, PFL4709" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387709.1" /db_xref="GI:330824406" /db_xref="InterPro:IPR011090" /db_xref="GeneID:10482845" /translation="MPAPVFKASPRLPTISIAPGLWAVLFMFTQTAAADVLVVTDSRH PVQTPAGVRIIELDQATRIEVELAAHLPADPQQAAALVRQRLHDGGEALQRRIGHAYQ GVADAWGLGIAKIPAVVVDRRYVVYGEPDVPRAVARINAYRSTQP" sig_peptide 1909643..1909747 /locus_tag="Alide2_1807" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.969) with cleavage site probability 0.675 at residue 35" misc_feature 1909739..1910077 /locus_tag="Alide2_1807" /note="Protein of unknown function (DUF1525); Region: DUF1525; cl06515" /db_xref="CDD:164086" gene 1910083..1911027 /locus_tag="Alide2_1808" /db_xref="GeneID:10482846" CDS 1910083..1911027 /locus_tag="Alide2_1808" /inference="protein motif:TFAM:TIGR03756" /note="KEGG: eba:ebA2511 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387710.1" /db_xref="GI:330824407" /db_xref="InterPro:IPR011092" /db_xref="GeneID:10482846" /translation="MSLLLASRRLRATVASLLLSTATSTFALDTATIVSSALSPDCLE YRVVGICYWLYCTPFGCSVRTSVKVRHYVPDAVVSSYSNTGENPWLEVRAMSMPNPTA KAGGDGTTNHDNENNLAKFKNADVIGHPAALVFSQFASASGYTCEGAGTAFMPYLLST LDTIAWRYNIPEAFYPEALIPGRREIGTRTGLNLWGNVYPRGGFLHQTDDHKSGAVVA QRAGDIVTRRNQIHVYQPLLANARDGYWPAGALMETDASTGKWQELTPTLSNSCVVFP HSRTRVQAQQGDYAWALWRPYSCCRRRGQVFLGSVDFM" sig_peptide 1910083..1910166 /locus_tag="Alide2_1808" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.993 at residue 28" misc_feature 1910179..1911018 /locus_tag="Alide2_1808" /note="TraU protein; Region: TraU; cl06067" /db_xref="CDD:195235" gene 1911038..1912444 /locus_tag="Alide2_1809" /db_xref="GeneID:10482847" CDS 1911038..1912444 /locus_tag="Alide2_1809" /inference="protein motif:TFAM:TIGR03755" /note="TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: ajs:Ajs_2181 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387711.1" /db_xref="GI:330824408" /db_xref="InterPro:IPR021204" /db_xref="GeneID:10482847" /translation="MNASLPDFLHRAKSPLRATLLVAAITLVVGVAWAQTRIDPNGVN VSGSVIGDDVLYSIGGGRAVSMGGAGNMQSIGVGVGWNSNLICGDMSITTTLQNQLNG ITNGFQTIMSNVIQNATAAVASLPALIIQRADPGLYNLLTNGILQARLDFDRSKMTCR AIANRMADMAGGQAGWDQLAEGMALRDAVSSTDAVSAIEQAESNKGNNGVPWVGGGNA GGSGQSSIKVVGDVTRAGYNLLNGRSATDTSSIARSACGNRLTCQTWSSPGAAAAFAN RVLGEREQRTCENCTKTQTTPGVGLTPVIQEEYETKLQVLQELVTGARPTTLANLDAA GSSSLPITRGVIEALRDEPDQDVLGRRLASEAALSSVLEKALLLQRTLLTGKKEPNVA ANELAVQAVDQENSALEQEINNLKTELELRRTLAGNSAMAIIQRHSTRAAGSRGVFEG DTTRDRLREVQKPRSGTP" sig_peptide 1911038..1911142 /locus_tag="Alide2_1809" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.938) with cleavage site probability 0.938 at residue 35" misc_feature 1911188..1912426 /locus_tag="Alide2_1809" /note="integrating conjugative element protein, PFL_4711 family; Region: conj_TIGR03755" /db_xref="CDD:163467" gene 1912441..1912794 /locus_tag="Alide2_1810" /db_xref="GeneID:10482848" CDS 1912441..1912794 /locus_tag="Alide2_1810" /inference="similar to AA sequence:KEGG:Ajs_2180" /note="KEGG: ajs:Ajs_2180 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387712.1" /db_xref="GI:330824409" /db_xref="GeneID:10482848" /translation="MSRLAWLRLPWLFNRRVGVALLWTLLVVAAAVAVNIAGIHVVGG VEGWQHWLQAHAGHFFVWRLCLYGATAYGWWWMRRRLLRREPSRETHQRLLRTEIAAV IAVVALEASQLLRHG" sig_peptide 1912441..1912542 /locus_tag="Alide2_1810" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.838 at residue 34" gene 1912810..1914333 /locus_tag="Alide2_1811" /db_xref="GeneID:10482849" CDS 1912810..1914333 /locus_tag="Alide2_1811" /inference="similar to AA sequence:KEGG:Ajs_2179" /note="KEGG: ajs:Ajs_2179 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387713.1" /db_xref="GI:330824410" /db_xref="GeneID:10482849" /translation="MTLYTTDYLEYYLTLVAWVVNNGIWSILVASGVFALPFVAIVIQ EWLKARSEGADEGNKGVLSSMRIENRVWVAIVVIMFAGIPFIPVDLATIRFDTTRSAQ CQVSVPLPNDTGWSNVYTALNDQSALVPVWWFFIHALSKAVTGSAVAAIPCGTDLRQI RMDVDATRIDDPVLAQEVADFTHDCYGPSRARLFMNRPTLSDEQMNDVTWIGSSYFLD TPGFYDTYRAKTPRTAWPYDATRDAGLAQVDSGGGYPSCRQWWADGGQGLRSRLLAQV DPDLLTRIGRWAGFLSQSEVNDSVIRAVVSPRQQKMNQGAVYTDYGGQIDKTLPNVVT RGASDLGLTVGSLAFFPAMDVVRQALPMVLTMLKMALVICIPLVLLIGTYDLKTVVTV SCVQFALFFVDFWFQLARWIDSTILDALYGWGFGADRPHTNFDPLIGLNNAFGDMLLN FVMAMMFIVLPGFWVAALAWVGVRVGNISQMLAAATDGAKSAGGKGADLAIKAAKAK" misc_feature 1912855..1914240 /locus_tag="Alide2_1811" /note="TraG-like protein, N-terminal region; Region: TraG_N; pfam07916" /db_xref="CDD:149152" gene complement(1914350..1914718) /locus_tag="Alide2_1812" /db_xref="GeneID:10482850" CDS complement(1914350..1914718) /locus_tag="Alide2_1812" /inference="protein motif:PFAM:PF12553" /note="PFAM: Protein of unknown function DUF3742; KEGG: ajs:Ajs_2178 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387714.1" /db_xref="GI:330824411" /db_xref="InterPro:IPR022213" /db_xref="GeneID:10482850" /translation="MTTNTHNGRWSHRLGRGAGRAWRGYLRREQRVAGWLVTRGVPAS AATAVLWIVKLAVLGVLLYSAFWLALLLAFAGIAAWMVRNVDADESSDDDEPQWRNGL DGYGLYRGEVRIDGGSADDE" misc_feature complement(1914374..>1914481) /locus_tag="Alide2_1812" /note="Protein of unknown function (DUF3742); Region: DUF3742; pfam12553" /db_xref="CDD:152987" gene 1914948..1915706 /locus_tag="Alide2_1813" /db_xref="GeneID:10482851" CDS 1914948..1915706 /locus_tag="Alide2_1813" /inference="similar to AA sequence:KEGG:Mpe_A2403" /note="KEGG: mpt:Mpe_A2403 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387715.1" /db_xref="GI:330824412" /db_xref="GeneID:10482851" /translation="MDGNSRHQVIKRLQAGLPRGAPFDLATLSQFGVSPQLAAHYADG GWLVRLAHGVYAFPNDEFGVYGALKFLQQRVPGLHVGGKSALALQGVRHNLGSREALV LWGDGRFALPAWFTSRFPARYVHARLFDWPDTALAGKTLTTPPGLPEDLRVAAPERAV LELLYEAGVKQSLEEARNLFDGLRSPRKDLLGQLLSCCASVKAVRLFLTWARETSLVD VDALLEQYPVRTGSNTRWMSRLDDGTLLSLRPHG" misc_feature 1915410..1915613 /locus_tag="Alide2_1813" /note="Protein of unknwon function (DUF2893); Region: DUF2893; pfam11459" /db_xref="CDD:151898" gene 1915699..1916619 /locus_tag="Alide2_1814" /db_xref="GeneID:10482852" CDS 1915699..1916619 /locus_tag="Alide2_1814" /inference="protein motif:PFAM:PF08843" /note="PFAM: Protein of unknown function DUF1814; KEGG: ajs:Ajs_2176 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387716.1" /db_xref="GI:330824413" /db_xref="InterPro:IPR014942" /db_xref="GeneID:10482852" /translation="MDKTYADTVRLLLAVAPDVFANDIFAMKGGTAINLFVRDMPRLS VDIDVVYLPWQTPRDEALQAINQELAAIATRVAPLGVQTRLVRAKDLGDTKLIVENDA SQVKIEVNVVFRGSVLPVERRPLSAKTSDLFGVEFELPVLAPDELYASKLVAALDRQH PRDLFDVWQLYESGDISDGMVECFVIYLAGHNRPPHEVLFGNDKDIAGEYERAFVGMT EVGCSLETLLDARARVRRELPQRLSTAHKQFLSGLARAEPDWSLVQCQHAAQLPALRW KLANLETFRKRRPDDFAAQSAALDTGLGQS" misc_feature 1915726..1916307 /locus_tag="Alide2_1814" /note="Nucleotidyl transferase of unknown function (DUF1814); Region: DUF1814; cl00973" /db_xref="CDD:193992" gene 1916822..1918666 /locus_tag="Alide2_1815" /db_xref="GeneID:10482853" CDS 1916822..1918666 /locus_tag="Alide2_1815" /inference="protein motif:TFAM:TIGR03760" /note="KEGG: ajs:Ajs_2175 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal" /codon_start=1 /transl_table=11 /product="integrating conjugative element relaxase" /protein_id="YP_004387717.1" /db_xref="GI:330824414" /db_xref="InterPro:IPR011093" /db_xref="InterPro:IPR011119" /db_xref="InterPro:IPR022391" /db_xref="GeneID:10482853" /translation="MLSLFQRKRVPPTAGTPPTSAIETPKGSMRPESAASLLATPRRQ KLLEHIWQRTSLSRRQFATLYLAPLERYAELVQQFPASESHHHAYPGGMLDHGLEIVA YALKLRQSYLLPAGVTPEAQAAQAEAWTAGTAYAALLHDIGKIAVDLHVEHADGSVWH PWHGPLRKPYRFRYRKEREYRLHSAATGLLYARLLDRDIFDWLSGYPDLWAALLYVLA GQYEHAGTLGELVVQADQASVAQELGGDPSKALAAPKHALQRKLLDGLRYLLKEEFKL NQAGPADGWLTQDALWLVSKTVSDKLRAHLLSQGIDGIPASNTAVFNVLQDHGIVQPT PDGKAIWKATITSDAGWSHAFTFLKLSPAMIWDAADRPAPFAGCVQVEEEQAEPQAPA VADGPRVEGTEAAPASAAPIASAAMDTGVAALLDLLGDTAPPATPEIPSSPVAEPEPA PSTMPRPQMSLAPSQDRAEPSGAHFMAWLRQSVQTRKLIINDAKALVHTVAGTTYLVS PGVFQRYAQEYLQVAALAKQEKLEGWQWVQKRFEKLGQHRKQPSGLNIWTCEVTGPRK SRRLHGYLLVSPDALFQETPPDNPYLRLVNEAAKREDSALGGKDDDQA" misc_feature 1916900..1917841 /locus_tag="Alide2_1815" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature 1918283..1918603 /locus_tag="Alide2_1815" /note="Protein of unknown function (DUF1528); Region: DUF1528; pfam07515" /db_xref="CDD:191765" gene complement(1918693..1918992) /locus_tag="Alide2_1816" /db_xref="GeneID:10482854" CDS complement(1918693..1918992) /locus_tag="Alide2_1816" /inference="protein motif:PFAM:PF01381" /note="KEGG: mpt:Mpe_A2406 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004387718.1" /db_xref="GI:330824415" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10482854" /translation="MPKRSIQRGRPTGTTTYEAEPAIAFGAAVREERTNQGIAQETLA HMAGIERSHMGKIERGEHVPTLPLILKIARALKCSSAHLMTLTEAKLAESAPSAD" misc_feature complement(1918744..1918917) /locus_tag="Alide2_1816" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature complement(order(1918816..1918818,1918891..1918893, 1918903..1918905)) /locus_tag="Alide2_1816" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(order(1918819..1918821,1918894..1918896)) /locus_tag="Alide2_1816" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature complement(order(1918813..1918818,1918828..1918830, 1918837..1918839,1918870..1918875)) /locus_tag="Alide2_1816" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene 1919098..1919724 /locus_tag="Alide2_1817" /db_xref="GeneID:10482855" CDS 1919098..1919724 /locus_tag="Alide2_1817" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; KEGG: mpt:Mpe_A2407 transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR substrate-binding protein" /protein_id="YP_004387719.1" /db_xref="GI:330824416" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10482855" /translation="MESSDITAEIRMAVLGEWVPPQLADVLALQRAEEPETHAVLAGW TDPGRGAELPDDGFDFALSAVARQWPGWVCEPLWHDTLAVAVAKRSHLLAYREVPCEE VLKQPLICSQSTADEPWRVTVQRVFENALQEREQTVETFDVAMTLVAAGYGIAIAPAA RLASYLRRGIAVRPLAGAPMIVMAYLLRRNATLSDTQARFARRARLVS" misc_feature 1919122..1919712 /locus_tag="Alide2_1817" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1919738..1919902) /locus_tag="Alide2_1818" /pseudo /db_xref="GeneID:10482856" gene complement(1919906..1920985) /locus_tag="Alide2_1819" /db_xref="GeneID:10482857" CDS complement(1919906..1920985) /locus_tag="Alide2_1819" /inference="protein motif:HAMAP:MF_00161" /note="SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; TIGRFAM: Peptidase A8, signal peptidase II; KEGG: kpu:pK2044_00535 lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; PFAM: Peptidase A8, signal peptidase II; Phosphatidic acid phosphatase type 2/haloperoxidase" /codon_start=1 /transl_table=11 /product="lipoprotein signal peptidase" /protein_id="YP_004387720.1" /db_xref="GI:330824417" /db_xref="InterPro:IPR000326" /db_xref="InterPro:IPR001872" /db_xref="GeneID:10482857" /translation="MSWKFVLYDWAGLNLALFQAINAGTPAVLWPLASLFSLIGSYWT APLTVLGLWAWSKASSDPARVRLVRSRLLHFGVAFLLALAAASALKWWLDFPRPHAVL GAAVHVIGAVELHYSLPSGHATYAALVAAALWPLLAWRGRGCLLMYAALVGWSRMAAG MHFPGDVLAGWGLGLGCTVLSRWLISFATAARAKGLLAPALPWYGVAAAAVAADQAAK LSIERAFVYGKQVEITPFFNLVHVLNPGAAFSFLAGASGWQRYFFITLGLLVAVWLIR QLKQTLPRFEAVGYSLILGGALGNVVDRLLRGQVVDFLDFHWQGMHWPAFNLADVAIS IGVGCLIARFLEIRDKGNKGRLLSG" misc_feature complement(1920431..1920718) /locus_tag="Alide2_1819" /note="PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cl00474" /db_xref="CDD:193835" misc_feature complement(1919936..1920334) /locus_tag="Alide2_1819" /note="Signal peptidase (SPase) II; Region: Peptidase_A8; cl00458" /db_xref="CDD:187899" gene complement(1920982..1923384) /locus_tag="Alide2_1820" /db_xref="GeneID:10482858" CDS complement(1920982..1923384) /locus_tag="Alide2_1820" /EC_number="3.6.3.3" /inference="protein motif:TFAM:TIGR01525" /note="TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: tin:Tint_3215 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_004387721.1" /db_xref="GI:330824418" /db_xref="GO:0005524" /db_xref="GO:0046872" /db_xref="GO:0046873" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006404" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="GeneID:10482858" /translation="MSCGSSGYGCADAPVLKSETQTSATTGVAVAVYHIENMDCPTEE ALIRGKLGGVPGVVELDFNLMRRTLTVRHTLASLAPVEQALAAVDMQAVRQDDRSAVQ TTRLAIAKMDCPSEEALIRSNLATLAGVIDLDFNLMQRTLTVRHAPAVLPDVLGALQS LGFEAQVLEEANRTPASSAPGQTTTHWWPLGISLVAAVAAEAVYWLQGGNHWSVMVLA LVAILTGGLSTYKKGWIALKNRNLNMNALMSIAVTGAMLIGHWPEAAMVMVLFALAEV IEAKSLDRARNAIAGLLDLAPERATVQQPDGSWREVDAKQVAIGSRVRVRPGERIALD GEVVEGRSTVNQAPITGESLPVDKGLGDPVFAGSLNESGSFEYRVTALANNSTLARII HAVEAAQGSRAPTQRFVDQFARWYTPAVFALAVVVALVPPLFVGAAWLDWIYRALVLL VIACPCALVISTPVSIVSGLAAAARHGILIKGGVYLEEGRKLRWLALDKTGTITHGKP AQTDFVALGNASPQHARSLAASLASRSDHPVSKAIAQAALADGVALREVAEFAALPGR GVRGVIDGVAYHLGNHRMLDELGHCSPAMEQRITALEAEGKTAVMLVEPEGVQALMAV ADTIKDSSRSAVAELHALGIQTMMLTGDNPHTAKAIATQAGIDRAQGNLLPDDKLREI EALAQSGGVGMVGDGINDAPALARADIGFAMGAAGTDTAIETADVALMDDDLRKIPTF VRLSRTTAQVLTQNIALALGIKAVFLVLTFTGHATMWMAVFADMGASLLVVGNGLRLL RR" misc_feature complement(1923121..1923291) /locus_tag="Alide2_1820" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cl00207" /db_xref="CDD:193707" misc_feature complement(1921024..1923084) /locus_tag="Alide2_1820" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature complement(1922893..1923072) /locus_tag="Alide2_1820" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cl00207" /db_xref="CDD:193707" misc_feature complement(1922569..>1922865) /locus_tag="Alide2_1820" /note="TraX protein; Region: TraX; cl05434" /db_xref="CDD:186658" misc_feature complement(1921921..1922589) /locus_tag="Alide2_1820" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature complement(1921273..1921518) /locus_tag="Alide2_1820" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 1923466..1923909 /locus_tag="Alide2_1821" /db_xref="GeneID:10482859" CDS 1923466..1923909 /locus_tag="Alide2_1821" /inference="protein motif:TFAM:TIGR02047" /note="TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: tgr:Tgr7_2809 putative transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR" /codon_start=1 /transl_table=11 /product="MerR family transcriptional regulator" /protein_id="YP_004387722.1" /db_xref="GI:330824419" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR011791" /db_xref="InterPro:IPR015358" /db_xref="GeneID:10482859" /translation="MEIRIGELAQRTGCEVVTIRYYEKEGLLPEPARSSGNYRLYGEE QVKRMQFIRHCRSLDMSLGEIRTLLNLWDSPTQDCGKVNALLDDHIRQVEARVEALLQ LRLHLTALREKCAGARPVEACGILQGLVNCSCHTVSTRDEASAGV" misc_feature 1923472..1923852 /locus_tag="Alide2_1821" /note="Cd(II)/Pb(II)-responsive transcriptional regulator; Region: CadR-PbrR; TIGR02047" /db_xref="CDD:131102" misc_feature 1923472..1923852 /locus_tag="Alide2_1821" /note="Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators; Region: HTH_CadR-PbrR; cd04784" /db_xref="CDD:133411" misc_feature order(1923475..1923483,1923523..1923525,1923574..1923582) /locus_tag="Alide2_1821" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133411" misc_feature order(1923616..1923618,1923625..1923627,1923637..1923642, 1923667..1923669,1923700..1923705,1923712..1923714, 1923721..1923723,1923733..1923735,1923751..1923753, 1923763..1923765,1923772..1923777,1923796..1923798, 1923811..1923816,1923832..1923834,1923838..1923840) /locus_tag="Alide2_1821" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133411" misc_feature order(1923700..1923702,1923805..1923807,1923832..1923834) /locus_tag="Alide2_1821" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:133411" gene complement(1923945..1925798) /locus_tag="Alide2_1822" /db_xref="GeneID:10482860" CDS complement(1923945..1925798) /locus_tag="Alide2_1822" /inference="protein motif:PFAM:PF00589" /note="PFAM: Integrase, catalytic core, phage; KEGG: mpt:Mpe_A2408 integrase (int)" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004387723.1" /db_xref="GI:330824420" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10482860" /translation="MALSDLAVRQAKATGKAYTLPDLDGLSLAVTAAGGRTWHFRYYW AGKQKRMSLGTYPEVTLREARSLRDEARALLAKGTNPRVHRKQKRTAVRLADENTFDA VYRKWLKHRGLSLKEGRQTTLSILPRIFDKDVLPALGKRSVYEIKRPDLLEVIAKIEK RKALSVAEKVRTWFNQLFRYALVIVPGLEQNPAADLDVVALPLPPVNHNPFLRMAELP KLLQRLRSYRGRRQTQLGLRLLLLTGVRTGELRQAMPDQFDLDRGLWIIPPDVVKQLQ LDMRKKRQQPKDIPPYIVPLSIQAMEIVRHLLDEFKPAQRHLFRHDSDLKKRISENTL NGALKRMGYQERLTGHGIRGTMSTALNEIGYPKVWVDAQLSHVDPNKVSATYNHAEYV EQRRRMMQDWADRLDLFEQNQVEAASMPLTVHLEGVPAFPSEQTANAPSTPVAASPIL LVTKPGDAMPLVSAAAHRLPAVPPPRSAAPLVPSDIQRERMELFDVFEAPHNLPVAAF AKMAGKSRRWISYEIKAGNLLALNVGNRGQRVPDWHLDPLKHELIQSVLKLTRGADPW QIYHALLQPRSMLRGHSALEGVTASNLDKLAMAVSTAVKESEWTPPRVGVA" misc_feature complement(1924587..1925792) /locus_tag="Alide2_1822" /note="integrase; Provisional; Region: PRK09692" /db_xref="CDD:170049" misc_feature complement(1924587..1925720) /locus_tag="Alide2_1822" /note="Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801" /db_xref="CDD:29502" misc_feature complement(order(1924641..1924643,1924671..1924673, 1924740..1924742,1924749..1924751,1924980..1924982, 1925061..1925063)) /locus_tag="Alide2_1822" /note="active site" /db_xref="CDD:29502" misc_feature complement(order(1924641..1924643,1924671..1924673, 1924740..1924742,1924749..1924751,1924980..1924982, 1925061..1925063)) /locus_tag="Alide2_1822" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29502" gene 1926278..1926889 /locus_tag="Alide2_1823" /db_xref="GeneID:10482861" CDS 1926278..1926889 /locus_tag="Alide2_1823" /inference="similar to AA sequence:KEGG:Pnap_4574" /note="KEGG: pna:Pnap_4574 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387724.1" /db_xref="GI:330824421" /db_xref="GeneID:10482861" /translation="MERSSHAQRALALLHKQGFLRTRDLDTIGAPRVVLTRLSTSGQL ERVGRGLYRLPGNPMSEKEDLATIAVKVPKAVFCLLTALQFHELTTQLPRQVWIAMPR GSHTPRIEHPPIKMVQMAGDAYALGIDEHERDGARLRIYSAAKTVADCFKHRNQIGLD VAIEALKAAWKTRKASADDLWRHAKVCRVANVMRPYLEAVSHE" misc_feature 1926371..>1926784 /locus_tag="Alide2_1823" /note="Predicted transcriptional regulator [Transcription]; Region: COG5340" /db_xref="CDD:34917" gene 1926985..1928460 /locus_tag="Alide2_1824" /db_xref="GeneID:10482862" CDS 1926985..1928460 /locus_tag="Alide2_1824" /inference="similar to AA sequence:KEGG:XF2733" /note="KEGG: xfa:XF2733 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387725.1" /db_xref="GI:330824422" /db_xref="GeneID:10482862" /translation="MALDHLTLTTYRDRHPAWRLLASPHAPLVASFLYRVFVAPNVRL TSEADLAEMLEDELFALREQLGVEVYPKTATEYLNDWCALDKGWLRKFYKPGTDEAQF DLTPATEKAIAWLVSLTERPFVGTESRLLTLFALLEQISTGSQADPARRLEELRRKRD EIDAEIGRVLSGDVPLMDDTAIKDRFLQFQQLARELLSDFRQVEHNFRQLDRSVREKI ALWDGSKGALLDEVMGERDAIGDSDQGRSFRAFWDFLMSSRRQEELSTRLDQILDLPA VAALKPEPRTRRVHHDWLEAGEHTQRMVAQLSQQLRRFLDDRAFQENRRILELLRSIE TKALALRDMPPTGEVMLLDEMGADIALPQERPLFALHAKPRLAELILESGEDDDIDTT RLFDQHVVDKTRLREALRQALRQQSQINLRALLETQPLQQGLAELVTWLELAHAGSRG LDGLRATVDDDVQEIIEWAVQDAPGSTVRRRVRMPRVIFTR" misc_feature 1927006..1928457 /locus_tag="Alide2_1824" /note="Protein of unknown function (DUF3375); Region: DUF3375; pfam11855" /db_xref="CDD:152291" gene 1928492..1929166 /locus_tag="Alide2_1825" /db_xref="GeneID:10482863" CDS 1928492..1929166 /locus_tag="Alide2_1825" /inference="similar to AA sequence:KEGG:Tmz1t_0049" /note="KEGG: tmz:Tmz1t_0049 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387726.1" /db_xref="GI:330824423" /db_xref="GeneID:10482863" /translation="MNDMHQDDPEGGTESRPPVVAELSQLMVHLLKGVLYRQDDERLW ASLLSLQARVREQAAVLLLDLVLDEAERYAFFKSQPEPEDVDATPRPPRLIARRPLSY PVSLMLALLRKRLAEADAGGGDTRLVLSREEIAELMRVFLPDGTNEARLVDQVDSTIT KVVELGYLRKLKPVAGAAQQAPRYEVRRILKAFVDAQWLADFDARLEGYRTALSGADR DKEAGR" gene 1929163..1932540 /locus_tag="Alide2_1826" /db_xref="GeneID:10482864" CDS 1929163..1932540 /locus_tag="Alide2_1826" /inference="similar to AA sequence:KEGG:Tmz1t_0051" /note="KEGG: tmz:Tmz1t_0051 conserved hypothetical cytosolic protein" /codon_start=1 /transl_table=11 /product="cytosolic protein" /protein_id="YP_004387727.1" /db_xref="GI:330824424" /db_xref="GeneID:10482864" /translation="MSDFSPQELDFVADDSRVGFRLQRLEVLNWGTFNRRVWRYELDG RNGLLTGDIGSGKSTLVDAVTTLLVPAQRIAYNKAAGAETRERSLRSYVLGHYKSERN ETTGSARPVALRDTTSYSVILGVFRNEGYGQAVTLAQVFWFREPQGQPARLFMTVERE LSITEHFSGFGSDINGLRKKLRAMGCELNDSFPPYGAWFRRRFGIEHEQALELFHQTV SMKSVGNLTDFVRSHMLEPFDVGGRIEALLGHFDDLDRAHHSVLKAKRQIELLTPLVD DGRRHAEIAAEIQALREGRDALRPYFAGLKAALLERRLELLTQDATRWDARIKQLGEQ RDNARIEQGKLEGALRENGGDRLQQLSAAIQQQEAEKQQRQEKADAYTTLLTRIGEAA PGDEAAFISQHASIGQRAEDLRAQVVGLENDEREFEFALRKGREEHEVLTSEIDSLAR RKSNIDAAQVRIRDALCAALSIAEEDLPFAGELIQVREDERDWEGAAERLLHGFGLSL LVPDRHYKDVADWVERQHLGTRLVYFHVRARKSTQAVSLHPQSLVRKLLIKPDTPHYD WLERELHHRFDLACCDSTEQFRRETRAITRAGQIKDPSGRHEKDDRRRIDDRSRYVLG WSNADKLRTLRDEREGLEQRLGDIGLRIADTQRLRGQCQAQLEALAKLEVFTRYSEID WQAPAREIARLTDERDRLKAASDTLRELESQLAQVVERLKEIEGDLGEAQGKRGETRS KHETAQAQYAQALDIQAQAALDDVLLQSLEGWRAEILGDHQLSVESCDNREQDVRNGL QARIDAEDKRLSRLTERIINAMRGFKEAFKAETAEIDISLAALPEFERLMKGLQHDDL PRFEARFKELLNVNTINEIANFNAQLARERETIKERVDVINQSLQVIDYNPGRYIRLL AQPSPDAEIRDFLQDLRACTEGALSGSEDEQYSETKFLQVKAIIDRFRGREGLAEIDR RWMQKVTDVRNGFLFSASERWREDDAEHEHYSDSGGKSGGQKEKLAYTVLAASLAYQF GLEWGAVRSRSFRFVVIDEAFGRGSDESAQYGLELFRQLKLQLLIITPLQKIHIIEPY VSSVGFVHNEGGRESRLRNLSIEEYRAQKAAATGAAP" misc_feature 1929175..1932531 /locus_tag="Alide2_1826" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4913" /db_xref="CDD:34522" gene 1932537..1933742 /locus_tag="Alide2_1827" /db_xref="GeneID:10482865" CDS 1932537..1933742 /locus_tag="Alide2_1827" /inference="similar to AA sequence:KEGG:Xfasm12_2281" /note="KEGG: xfm:Xfasm12_2281 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387728.1" /db_xref="GI:330824425" /db_xref="GeneID:10482865" /translation="MTWSQPTDLRTQVERLWQRGELLRTVVGGDTLNWPLRLSLKSPS AADLSHRFDAVRGWVREISAMPRVRIEWREWTHRVQGRQRLPDTLWIDTLDDALAMIG KTGDAVRFQALWQQTAEAQPTLLAWLHRSPLQTLALAEHWPRLLAVVAWVQAHPRPGV YLRQVDVPGVDSKFIEAHRGILGQWLDLALPTEAIEPAATGVAGFARRYGFLEKPVRI RLRLLDPQLPQLPGCTGLTDITLDEDSFATLALPAQRVFITENEVNFLAFPPVSSAIV VFGAGYGWGALARANWLYRASLHYWGDIDTHGFAILDSLRKYFPLAASFLMDRSTLMA HALQWGEEPLDKRHTLPLSRLVDEEAALYDDLRNDRIRPQLRLEQERIGYRWLCAALA TTVQDDSRP" misc_feature 1932543..1933721 /locus_tag="Alide2_1827" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4924" /db_xref="CDD:34533" misc_feature 1932552..1933100 /locus_tag="Alide2_1827" /note="Uncharacterized protein conserved in bacteria N-term (DUF3322); Region: DUF3322; pfam11795" /db_xref="CDD:152231" misc_feature 1933164..1933709 /locus_tag="Alide2_1827" /note="Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from...; Region: TOPRIM; cl00718" /db_xref="CDD:193916" gene complement(1933764..1934132) /locus_tag="Alide2_1828" /pseudo /db_xref="GeneID:10482866" gene complement(1934967..1935326) /locus_tag="Alide2_1829" /pseudo /db_xref="GeneID:10482867" gene 1935553..1935846 /locus_tag="Alide2_1830" /db_xref="GeneID:10482868" CDS 1935553..1935846 /locus_tag="Alide2_1830" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: rpi:Rpic_2066 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004387729.1" /db_xref="GI:330824426" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10482868" /translation="MERRRTFSREFKLEAVRLVTERGVAVAQAAKDLDVHENVLRKWV RELREEPQEAFPGNGKQKAQDAEIARLRKEVAKLKMERDILKKAAAYFAKESM" misc_feature 1935553..1935783 /locus_tag="Alide2_1830" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 1935843..1936472 /locus_tag="Alide2_1831" /db_xref="GeneID:10482869" CDS 1935843..1936472 /locus_tag="Alide2_1831" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: rde:RD1_3452 transposase, putative" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004387730.1" /db_xref="GI:330824427" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10482869" /translation="MKFGFVAKHRGAWPVNLMCEALGVSRGGFYAWLTRPRSQRSLSD EVLGAQVHQSFVRSDRTYGARRVWHDVLEQGQACGLHRIERLMREQALRARPRRRGLP KDRGTRSAVADNVLDRQFRADGPNQKWVADFTYIWTAEGWLYVAAVLDLYSRRIVGWS MQESMTSQLVVDALMMAVWRRGKPVALLHHSDQGSQYQREAALDRAGAS" misc_feature 1935906..>1936433 /locus_tag="Alide2_1831" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature 1936203..>1936433 /locus_tag="Alide2_1831" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1937148..1937780) /locus_tag="Alide2_1832" /db_xref="GeneID:10482870" CDS complement(1937148..1937780) /locus_tag="Alide2_1832" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_5293 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_004387731.1" /db_xref="GI:330824428" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10482870" /translation="MASKSPSSHPTLNEAESATRERILLEAARLFRHHGYAATTLREI ADAAHIKAGSIYYHFASKEEILGDVLDKGIQAVSDAVRERIEALPAGASFRDRIAAGI EGHLWGLLHNGDFTSANIRIYGQIPTSAKNRHRVVRRAYADLWDRLFEGAMASGELRS DSSAGVIRLFVLGALNWTVEWYNPQRGSFQDFSRQLTEIVFNGVLARETA" misc_feature complement(1937151..1937759) /locus_tag="Alide2_1832" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(1937574..1937714) /locus_tag="Alide2_1832" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1938014..1939180 /locus_tag="Alide2_1833" /db_xref="GeneID:10482871" CDS 1938014..1939180 /locus_tag="Alide2_1833" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: axy:AXYL_02788 acyl-CoA dehydrogenase 1; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387732.1" /db_xref="GI:330824429" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482871" /translation="MEFEFSPEQTQLREAILALCSRFDDAYWLRKDREGGFPEEFYRA VADAGWLGIAMPEEYGGAGLGITEAAVMMQAIAESGGGLAAASSVHMNIFGLNPVVVF GSDEQKRRALPPLIRGEQKACFAVTEPDAGLNTTKLKTRAVRDGDRYLISGRKVWIST AQVADNMLILARTTPVEEVERPTDGLSLFYTKLDRNYVDVREIDKMGRKAVDSNELFI DGLPVPVADRIGEEGKGFHYILHGMNPERVLVSAEAIGIGRAALARATRYAKERVVFD RPIGKNQGIQHPLAISWAELEAAHLMTFRAATLYDRDQPCGSQANAAKYLAAEAAVKC CETAILTHGGFGYAKEYHVERFLREVMILRIAPVSPHLVLCNIAEKVLGLPKSY" misc_feature 1938014..1939177 /locus_tag="Alide2_1833" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1938107..1939108 /locus_tag="Alide2_1833" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1938293..1938295,1938383..1938385,1938389..1938391, 1938482..1938484,1938488..1938490,1939106..1939108) /locus_tag="Alide2_1833" /note="active site" /db_xref="CDD:173838" gene 1939221..1940537 /locus_tag="Alide2_1834" /db_xref="GeneID:10482872" CDS 1939221..1940537 /locus_tag="Alide2_1834" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: reu:Reut_A3087 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387733.1" /db_xref="GI:330824430" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482872" /translation="MAARAPAGRAQALKSTPMTASMPTHQTSKPFAPLAGVRVLDFSK VLAGPMCGQYLADLGATVIKVEPCDGGDDTRRWPPIVGEDGAVFLSANRNKQSIAVDL KTAAGRDVVMRLLEDSDVMIESYRKGAMERLGLGQEEVRKRHPRLIYASISGFGRTGP LSHLPGYDLMVQAFSGIMSVTGERNGGPVRAAFSPLDQTTGIWAAFGILAALRERDAT GVGRFLEVSLYETAMAFLGYTSQIYWETGRTPPRCGTSHESLCPYQVFPAKDGEIMIG VGNDSLFRSYCVAAGMPEMADDPKFRTNGDRVRHFDETVARVSERTRQKTVDEWSQLL DEAGVPNSPIHSLDRVLAMPHTAERGIVMEYEHAALGAMKTMAMPVTFDGEQRTVKRA PPLLGEHTAEILAAAGYDADTIERLRRDGVVRTHGTPVGAAGTKVA" misc_feature 1939308..1940489 /locus_tag="Alide2_1834" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 1940534..1941676 /locus_tag="Alide2_1835" /db_xref="GeneID:10482873" CDS 1940534..1941676 /locus_tag="Alide2_1835" /inference="protein motif:PFAM:PF02771" /note="PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004387734.1" /db_xref="GI:330824431" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482873" /translation="MMAAASLGDATQTAEDAHRMLREAAVSFAARETSIARVRALRGT DPGYDRAVWRSLADLGWTGILIPELHGGLGLGLGEMATVLEEFAKTLSPEPLNAVAVL ASGVLVHGDNDALKAELLPGLALGRVLAALAWQEPHGGIEPLEIATRVERGVLRGEKR FVVPAEADGYLVSAQGADGPAVYWVEQGAPGLQRSFELRADGSRSGRLVLDGVKVSDA QRVASPAVAAVALRRCVDTATVMAGAELLGVMRRALDITLEYMRTRVQFGKPIGSYQA LQHRAVDLFIEKELAFSVLADALLHLDEDDGQLALWASRVKSRCSDAGLRIGRESIQI HGGIGYADECDIGLYLKRALVLSAWLGNGAMHRRRYAALAAAHGSA" misc_feature 1940576..1941619 /locus_tag="Alide2_1835" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 1940579..1940887 /locus_tag="Alide2_1835" /note="Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771" /db_xref="CDD:190417" misc_feature 1940837..1941616 /locus_tag="Alide2_1835" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature order(1940837..1940839,1940927..1940929,1940933..1940935, 1941014..1941016,1941020..1941022,1941605..1941613) /locus_tag="Alide2_1835" /note="active site" /db_xref="CDD:173838" gene 1941690..1942847 /locus_tag="Alide2_1836" /db_xref="GeneID:10482874" CDS 1941690..1942847 /locus_tag="Alide2_1836" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: pol:Bpro_5277 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387735.1" /db_xref="GI:330824432" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482874" /translation="MMADTDWDALDDETFRREVADFFRTEYPEEIRFPAHFLRWAQCR DWYRKLYAKGFAAPAWPREWGGMGLSPGKLLAFIEEQEKHGIARTPDMGITMLGPLLI RFGTEQQKREFLPPTLRGEYIWCQGYSEPNAGSDLASLRTEAVLDGDEYVITGSKIWT SFAMDATHMFLLVRTDKQAKKQEGISFMLVDMKSPGITVRPIRNLNGSEHFAEVFLDQ VRTPARWLVGQPNQGWTIAKALLGFERISIGSPKLSQTGLQRLERIVQARGLTADAAF MDRLTQLKLNVADLTSAYGRFAEIVKRGGTLGPDVSLLKIFASETFQRITELTLEAGG DAGAIEGEVPFGDAAIDILSPFYNARPSTIYGGSNEIQRNIIAKSVLNLPG" misc_feature 1941720..1942838 /locus_tag="Alide2_1836" /note="pimeloyl-CoA dehydrogenase, large subunit; Region: pimC_large; TIGR03204" /db_xref="CDD:132248" misc_feature 1941720..1942832 /locus_tag="Alide2_1836" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(1941975..1941977,1942065..1942067,1942071..1942073, 1942164..1942166,1942170..1942172,1942779..1942787, 1942791..1942793,1942797..1942799) /locus_tag="Alide2_1836" /note="active site" /db_xref="CDD:173838" gene complement(1942967..1943359) /locus_tag="Alide2_1837" /db_xref="GeneID:10482875" CDS complement(1942967..1943359) /locus_tag="Alide2_1837" /inference="protein motif:PFAM:PF01796" /note="PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: eba:ebB200 putative thiolase subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387736.1" /db_xref="GI:330824433" /db_xref="InterPro:IPR002878" /db_xref="GeneID:10482875" /translation="MTANERKIPAPTVYPETEAFWKAAGEGQLLVKHCTACGEYHHFP RSLCPFCFSDKTEWRNASGHGVIYSYSVMRRVEVPYVIAYVTLDEGVTVMTNIVDCDP DAVRIGQRVKVKFQPSDGGPPVAMFTPA" misc_feature complement(1943189..1943299) /locus_tag="Alide2_1837" /note="Rubredoxin-like zinc ribbon domain (DUF35_N); Region: DUF35_N; pfam12172" /db_xref="CDD:152607" misc_feature complement(1943012..1943188) /locus_tag="Alide2_1837" /note="DUF35 OB-fold domain; Region: DUF35; pfam01796" /db_xref="CDD:190115" gene complement(1943364..1944530) /locus_tag="Alide2_1838" /db_xref="GeneID:10482876" CDS complement(1943364..1944530) /locus_tag="Alide2_1838" /inference="similar to AA sequence:KEGG:H16_A1297" /note="KEGG: reh:H16_A1297 acetyl-CoA acetyltransferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="YP_004387737.1" /db_xref="GI:330824434" /db_xref="GeneID:10482876" /translation="MTIKGKACIAGVFEHPTRKAVDKSVVQLHAEVARGALEDAGLSK NDVDAYYCAGDAPGLGPLSMVDYLGLKVRHIDSTDVGGSSYLVHVSHAAQAIAAGKCN VALITLAGRPRAEGQATGTAPRNFGATADTPFEFPFGPATANMYAMAAMRHMHEYGTT SEQLAWIRVAASHHAQHNPHAMLRDLVTVEDVVNSPLIADPLHRLDCCVVSDGGGALI VTRPEIARSLKRPVVKILGAGEAVKGQMGGKVDLTYSGAAWSGPLAFEEAGVTPADIQ YASIYDSFTITVLMQLEDLGFCKKGEGGKFVSDGNLISGVGKLPINTDGGGLCNNHPS NRGGMTKVIEAVRQLRGEAHPAVQVRDCGLALAHGTGGSLGTRHGSATLILAKE" misc_feature complement(1943367..1944530) /locus_tag="Alide2_1838" /note="acetyl-CoA acetyltransferase; Provisional; Region: PRK08142" /db_xref="CDD:181251" misc_feature complement(1943403..1944503) /locus_tag="Alide2_1838" /note="Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-; Region: SCP-x_thiolase; cd00829" /db_xref="CDD:29416" misc_feature complement(order(1943535..1943537,1943688..1943690, 1944285..1944287)) /locus_tag="Alide2_1838" /note="active site" /db_xref="CDD:29416" gene complement(1944635..1945567) /locus_tag="Alide2_1839" /db_xref="GeneID:10482877" CDS complement(1944635..1945567) /locus_tag="Alide2_1839" /inference="protein motif:PFAM:PF01614" /note="KEGG: pol:Bpro_5250 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004387738.1" /db_xref="GI:330824435" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10482877" /translation="MPTQPKQSKPQRDADEAPVDRALALDSGPRSLLRTLRILEQLAA TPQGGTLAMLSAELQSPKSSLLGLLRPLCSYGYIVNSEGRYVLGPAAYRLGLSIMPTL SISRIATPIMRELVDRCGETVLVAVLDREAGTAVYVEKIESTQSIRYTVALGTARPLY CSAAGRVLLAYADEEYIERYLRRAPFAPLTPQTLTGAADLRRLLPQVREQGLSITIGQ VSSDVAGFAAPIFDHQGRVIAALAMAAPVSRTRANPQHFAQQMREAADSISFGFGHAG AALTMAPGSEVRAPEPAPPPAAPAKRRRMSTATG" misc_feature complement(1944761..1945480) /locus_tag="Alide2_1839" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(1945223..1945480) /locus_tag="Alide2_1839" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1944761..1945129) /locus_tag="Alide2_1839" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 1945716..1946474 /locus_tag="Alide2_1840" /db_xref="GeneID:10482878" CDS 1945716..1946474 /locus_tag="Alide2_1840" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: eba:ebA5300 putative dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004387739.1" /db_xref="GI:330824436" /db_xref="InterPro:IPR002198" /db_xref="InterPro:IPR020842" /db_xref="GeneID:10482878" /translation="MFSGQALQDRVAFVTGAGQGIGAAVAEAYGAQGAKVAVVDLRLA TAEKVAAGIRERGGQAQAFACDVSDRQQVDAAVKQVNEAFGPVEILVNNAGITHTAML HRMTTPQWDEVIAVHLTGSFNCLQAVVNGMMERKQGWIINVTSTAGILGTLGQINYGS AKAGLLGFTKSAAKELARYNIVVNAVAPGAATPMTETIRTDPRFKDAYLERVPLGRWA EPAELAPVFVFLASPGASYVTGQLIGVDGGLSIH" misc_feature 1945734..1946465 /locus_tag="Alide2_1840" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature 1945743..1946462 /locus_tag="Alide2_1840" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(1945761..1945763,1945767..1945772,1945776..1945778, 1945833..1945841,1945992..1946000,1946142..1946150, 1946187..1946189,1946199..1946201,1946277..1946282, 1946283..1946285) /locus_tag="Alide2_1840" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1946064..1946066,1946148..1946150,1946187..1946189, 1946199..1946201) /locus_tag="Alide2_1840" /note="active site" /db_xref="CDD:187535" gene 1946575..1948692 /locus_tag="Alide2_1841" /db_xref="GeneID:10482879" CDS 1946575..1948692 /locus_tag="Alide2_1841" /inference="protein motif:PFAM:PF02629" /note="KEGG: bpt:Bpet1210 acetyl-CoA synthetase; PFAM: CoA-binding; SMART: CoA-binding" /codon_start=1 /transl_table=11 /product="CoA-binding domain-containing protein" /protein_id="YP_004387740.1" /db_xref="GI:330824437" /db_xref="InterPro:IPR003781" /db_xref="GeneID:10482879" /translation="MPHVREGALHRLFHPRSVAFYGASSDPRKIGGRPLDFIKSTHFD GALYPINPQYQEVQGLKAYPTAEAIEGPVDMAIVAVPAPHVLAALEDCARKKVGGAVV LSAGFAEVGGQGLEWQRQITELARRTGMRVVGPNCMGSINVRRGLLGTFTPSAAGFGL VPGRISLVSQSGAFGGYCLSLIRQRGIGLNLWVTTGNQSDVDFADCVRFYADDEETDV IVGYVEAVTDKQRLVEALTLARERGKRIVMMKVGSSEAGAHAAASHTASLAGSDQVYD GLFRQYGVYRARTIDELFDVAYACSLARKPPQGNRLGLLTVSGGVGALMADAAADHGM DVAPMPDEAQRRLKAIVPFAGPRNPVDMTAQLVNDVTLFEKNFNIMLEEGGYDIVVAF LSSVGQVPALSDELLQQLKKVLARFADRTIIISMLATPEVRKLYEAAGVMVFDEPTRA VRAASALVRFARESARAEAADAPPPLPAGALPAPTKALNEVEAKTVLASAGIPVVREV LAATEDAAAKAAAQLGYPVALKIASVDIPHKSEVGGVLLALADETQLREGWRTLMKRV AERAPGARLDGAVVAPMVKRGVETIIGVNRDPVFGPVVMFGLGGVFVEAFKDVAFRVA PIGVAQARAMIDEVRGRVLLTGLRGQPPADEIALAEAIARVSVFAARNAEHIDSIDIN PFVVLPAGEGGVALDALIVPRHH" misc_feature 1946599..1948461 /locus_tag="Alide2_1841" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042" /db_xref="CDD:31244" misc_feature 1946620..1946988 /locus_tag="Alide2_1841" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 1948715..1949684 /locus_tag="Alide2_1842" /pseudo /db_xref="GeneID:10482880" gene 1949903..1950721 /locus_tag="Alide2_1843" /db_xref="GeneID:10482881" CDS 1949903..1950721 /locus_tag="Alide2_1843" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: dac:Daci_0194 enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387741.1" /db_xref="GI:330824438" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482881" /translation="MNYETIQYELRDGIGLLTLNRPRQRNPLSVQMRDELASLMPVIS HDPSVKALVVTGAGENFCGGGDISGMRKPVTARTPAEGRNTIRDVQAWLPQFVGLEKP VIAAVDGVCYGAGFSLALAADFIVCTPRARFCQAFVRVGLVPDFSAIFLLPRTVGLHK AKELMFTGRVVDAEEAKSLGIVFEIHQPESLLAAAMAIAGRFREAPTESIGITKTLLN QSFQSDERLMGELEGFASATVKTLPYHQEAVERFLAKEPPRFDWDRLAGEDKTR" misc_feature 1949903..1950673 /locus_tag="Alide2_1843" /note="Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Region: CaiD; COG1024" /db_xref="CDD:31227" misc_feature 1949918..1950505 /locus_tag="Alide2_1843" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1949975..1949977,1949981..1949983,1950077..1950079, 1950089..1950103,1950230..1950232,1950236..1950244, 1950308..1950313,1950320..1950322) /locus_tag="Alide2_1843" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1950095..1950097,1950242..1950244) /locus_tag="Alide2_1843" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1950182..1950184,1950206..1950208,1950269..1950280, 1950314..1950325,1950341..1950343,1950347..1950355, 1950359..1950364,1950377..1950382,1950386..1950391, 1950395..1950400,1950407..1950409,1950440..1950442, 1950449..1950451,1950494..1950496,1950503..1950505) /locus_tag="Alide2_1843" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1950735..1953017 /locus_tag="Alide2_1844" /db_xref="GeneID:10482882" CDS 1950735..1953017 /locus_tag="Alide2_1844" /EC_number="1.3.99.2" /EC_number="1.3.99.10" /inference="protein motif:PRIAM:1.3.99.10, 1.3.99.2" /note="KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="Isovaleryl-CoA dehydrogenase, butyryl-CoA dehydrogenase" /protein_id="YP_004387742.1" /db_xref="GI:330824439" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482882" /translation="MIDLSSRIDALSDDERMVRDAAAAYSSRDPEYRRVRGLRGQLPS YDAAAWRELAEMGWTGCRLPESVGGLQLGFAQLALLLEQHGRALAPEPLTAAALLGGG ALLGGDNEPLKQEWLPRLAAGDWTPTLAWQEAAGSQSVQPTATRATQRDGHHVLDGRK CFVPIGETADAFIVSAAAADGCALYLVDRDAPGLAIRSQTRVDGGTWSELTLTAVPAR AVVASAAVALPALERVLDEGRLAVSAELLGVMGRALEITVDYIKVREQFGKPIGSFQA LQHRAVDMFVLVELSRAVVRQSAQRFDAGENANERALAASQAKARCSDAALKVAKGCV QLQGGIGYTDECNIGLFLKRAMVLAAWLGDASTHRRRYGERAGDPSEEAEASDPLRRD VRSFLAANFPPEWRFPATRMSIKETVSWQRKLAEKGWAAPGWPTEHGGTGLSAYDQLA MAEEFDRHGVSIAPNMGITMLGPLLIRYGSEEQKRNYLPRILSGELRWCQGYSEPGAG SDLAGLRTKAVLDGDEFVVNGHKIWTSFAHEADMIFMLVRTDPEAKKQEGISFLLADM KSPGITVRRIRNLGGSSEFCEVFFDNVRVPKQNLVGGLNRGWTMAKSLLGSERILIGN PRLAKAPLQLLHRLMKARGLLQQPAARARFDELRLDVEDLGASYVRMAEVLRRGDELG AEVSMLKIWITEAMQRVTDLLLEAGAEDATLDASTTLPDGTQMHIANQYFASRPATIY GGSSEIQRNILAKAMLELPG" misc_feature 1950765..1951865 /locus_tag="Alide2_1844" /note="pimeloyl-CoA dehydrogenase, small subunit; Region: pimD_small; TIGR03203" /db_xref="CDD:132247" misc_feature 1950768..1951106 /locus_tag="Alide2_1844" /note="Acyl-CoA dehydrogenase, N-terminal domain; Region: Acyl-CoA_dh_N; pfam02771" /db_xref="CDD:190417" misc_feature 1951059..1951847 /locus_tag="Alide2_1844" /note="Acyl-CoA dehydrogenase; Region: ACAD; cd00567" /db_xref="CDD:173838" misc_feature order(1951119..1951121,1951125..1951127,1951218..1951220, 1951224..1951226,1951812..1951820,1951824..1951826, 1951830..1951832) /locus_tag="Alide2_1844" /note="active site" /db_xref="CDD:173838" misc_feature 1951869..1953002 /locus_tag="Alide2_1844" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature 1951899..1953008 /locus_tag="Alide2_1844" /note="pimeloyl-CoA dehydrogenase, large subunit; Region: pimC_large; TIGR03204" /db_xref="CDD:132248" misc_feature order(1952142..1952144,1952232..1952234,1952238..1952240, 1952331..1952333,1952337..1952339,1952949..1952957, 1952961..1952963,1952967..1952969) /locus_tag="Alide2_1844" /note="active site" /db_xref="CDD:173838" gene complement(1953082..1954038) /locus_tag="Alide2_1845" /db_xref="GeneID:10482883" CDS complement(1953082..1954038) /locus_tag="Alide2_1845" /inference="similar to AA sequence:KEGG:Reut_B4356" /note="KEGG: reu:Reut_B4356 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387743.1" /db_xref="GI:330824440" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482883" /translation="MLKRRAALLAGASLLGGAPAWADTWPSKPIRLVIPFAPAGPADV LARVVAQKLGPSLGQTVLPDNRAGANGIVGTDVVAKAAPDGYTLLMTVGSAQTLAPNL YKLPYDAQKDLVAISNFATLKTMIVVHPSVPAKTLQAFIALAKANPGKYDYAAGTSLV QLVGESFKRATGTHIVAIPYKGTGPQLAAVLAGEVAMTIDPFTAVQHVKAGRLRALAM LSDKRSPVLPEVPTLLESGVHGVELSSWIGLMAPAGTPRPIIDRLHAEMVKIVAMPDV KERLARLNYEPVGDTPEQFAAAIAAETARWAKIVKETGFKPE" sig_peptide complement(1953970..1954038) /locus_tag="Alide2_1845" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 23" misc_feature complement(1953094..1953972) /locus_tag="Alide2_1845" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1953097..1953903) /locus_tag="Alide2_1845" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1954041..1954999) /locus_tag="Alide2_1846" /pseudo /db_xref="GeneID:10482884" gene complement(1955011..1955982) /locus_tag="Alide2_1847" /db_xref="GeneID:10482885" CDS complement(1955011..1955982) /locus_tag="Alide2_1847" /inference="similar to AA sequence:KEGG:Rmet_3671" /note="KEGG: rme:Rmet_3671 extra-cytoplasmic solute receptor" /codon_start=1 /transl_table=11 /product="extra-cytoplasmic solute receptor" /protein_id="YP_004387744.1" /db_xref="GI:330824441" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482885" /translation="MLGIRTLARIAGLLTFAAAAATASAQTYPSKPIKLIVPYATGGF SDALARQLAQKFTESMGQAVVVENKPGASTIIGVAAAAKAPADGYTLLLATGALTINP HLFPKLPYDAERDFSPIGRVADLPYVLVSHPSLPVNSFKEFLAYVKANPEKVNFGTPG NGTAPHLAMQLLEDAAGISVHKLHYKGNGPALTDLVGGQINLLLDGLQQPLPFITSGK LKLLATASLKRLPNLPDVPAIAESFPGFEASTWYQLLAPAGTPAPIIARLNAEIEKFT KDPAIRDRLLSQGAIMHSSSPQELAAYSKAETKRWGEIISKAGIKLE" sig_peptide complement(1955905..1955982) /locus_tag="Alide2_1847" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.969 at residue 26" misc_feature complement(1955023..1955907) /locus_tag="Alide2_1847" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1955023..1955838) /locus_tag="Alide2_1847" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1956027..1957001) /locus_tag="Alide2_1848" /db_xref="GeneID:10482886" CDS complement(1956027..1957001) /locus_tag="Alide2_1848" /inference="similar to AA sequence:KEGG:RALTA_B1677" /note="KEGG: cti:RALTA_B1677 conserved hypothetical protein; UPF0065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387745.1" /db_xref="GI:330824442" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482886" /translation="MRPILKTLLACVAASAPFLASAQVENYPTKPIRFIVPYSPGGST STVARLVGTKLTEAWKQQVLVDNRPGGSTVIGTHALAKSPPDGYTIMLVVNSHLANGH LLKNLPYDTMKDFTPVATLVKTELLLDVNPTVPASTLPEFIALLKDKPGQLNVATIGS GSVTRLISELFLMETGTKAVQVSYQGTPQMLQDLMGGQVHFIFDTPATTLPFAKDKRL KPLAVTGPKRLAAFPEVPTFAEMGLPEIDMSVWFMAIAPAGTPKPIIAKLNAEINRIL ALPEVRNALALQVMEPYISTPEEAARMLRAVYDQYGRIIARAGIKLEQ" sig_peptide complement(1956933..1957001) /locus_tag="Alide2_1848" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.987 at residue 23" misc_feature complement(1956042..1956995) /locus_tag="Alide2_1848" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1956042..1956863) /locus_tag="Alide2_1848" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1957199..1958056) /locus_tag="Alide2_1849" /db_xref="GeneID:10482887" CDS complement(1957199..1958056) /locus_tag="Alide2_1849" /EC_number="4.2.1.107" /inference="protein motif:PRIAM:4.2.1.107" /note="KEGG: pol:Bpro_5282 MaoC-like dehydratase; PFAM: MaoC-like dehydratase" /codon_start=1 /transl_table=11 /product="3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase" /protein_id="YP_004387746.1" /db_xref="GI:330824443" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10482887" /translation="MAIDYDRLMAWPFEDVHQRYTERDTMLYALGIGLGTDPLDETEL RFVYEKNLLVLPTMAVVLGHPGMWMKDPRSGIDWVRLVHGEQGLTLHKPLPPAGEIIG RTRITGIVDKGPGKGMLVYSERTVRDAATGEPLATMTSTTFCRADGGFGGPAGPVKPV HELPTRAPDRSLDFATQPRAALIYRLSGDYNPLHAEPAIGHAAGFERPILHGLASYGI AAWAVTRALCDGDPHRLASFDVRFSSPVYPGETIRTEMWVDDKVVSFRARVLERDTVV LNNGRATLR" misc_feature complement(1957226..1958053) /locus_tag="Alide2_1849" /note="enoyl-CoA hydratase; Region: PLN02864" /db_xref="CDD:178455" misc_feature complement(1957202..1957567) /locus_tag="Alide2_1849" /note="HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit; Region: HDE_HSD; cd03448" /db_xref="CDD:48043" misc_feature complement(order(1957469..1957471,1957481..1957483, 1957487..1957489,1957499..1957504,1957511..1957513, 1957520..1957522)) /locus_tag="Alide2_1849" /note="dimer interaction site [polypeptide binding]; other site" /db_xref="CDD:48043" misc_feature complement(order(1957211..1957213,1957229..1957231, 1957256..1957258,1957262..1957264,1957289..1957291, 1957331..1957333,1957337..1957339,1957343..1957345, 1957352..1957354,1957388..1957390,1957400..1957402, 1957409..1957411,1957418..1957420,1957424..1957426, 1957475..1957477,1957484..1957486,1957490..1957492, 1957508..1957510)) /locus_tag="Alide2_1849" /note="substrate-binding tunnel; other site" /db_xref="CDD:48043" misc_feature complement(order(1957418..1957423,1957430..1957432, 1957475..1957477,1957484..1957486,1957490..1957495, 1957505..1957507)) /locus_tag="Alide2_1849" /note="active site" /db_xref="CDD:48043" misc_feature complement(order(1957421..1957423,1957475..1957477, 1957484..1957486,1957490..1957492)) /locus_tag="Alide2_1849" /note="catalytic site [active]" /db_xref="CDD:48043" misc_feature complement(order(1957352..1957354,1957358..1957360, 1957388..1957390,1957397..1957399)) /locus_tag="Alide2_1849" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:48043" gene complement(1958046..1958363) /locus_tag="Alide2_1850" /db_xref="GeneID:10482888" CDS complement(1958046..1958363) /locus_tag="Alide2_1850" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387747.1" /db_xref="GI:330824444" /db_xref="GeneID:10482888" /translation="MGISSKRHDKVVALTGAGRGIGHDIALLVAAEGASVGNDAFAVR TDEIFQMSLPRPIRGMHACHRWTRRASPRARRQGSGPISFRSGARPPCSRGTPFEEQQ DGD" misc_feature complement(<1958256..1958363) /locus_tag="Alide2_1850" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(1958445..1959302) /locus_tag="Alide2_1851" /db_xref="GeneID:10482889" CDS complement(1958445..1959302) /locus_tag="Alide2_1851" /inference="similar to AA sequence:KEGG:BB4339" /note="KEGG: bbr:BB4339 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387748.1" /db_xref="GI:330824445" /db_xref="GeneID:10482889" /translation="MQGSAVTLTLAQHSAAWRFSDLGPIRRLQLRQALFAWMAVTLSG AQDPLVHLLAEDALEQGGHGQATVVGHGFATSTRQAALVNAAASQAAEGNGAMSIGSA VLVASLLALAESRGDSGRAFLTAFAAGQDLLDRIATGSPGAAALAAAAGGAHLLQLNA ADTAAAFALAGATALGAAGLSRPMQAGKAAADGLLAVHLAARGYGHGAETLSGPWPAV LPQLDQPMPQDTTEQQRNLEVRFRHQSLPVLDEADARSLLRLVDQLDDLPDLSPLAGV LAARPARRH" gene complement(1959514..1959939) /locus_tag="Alide2_1852" /db_xref="GeneID:10482890" CDS complement(1959514..1959939) /locus_tag="Alide2_1852" /inference="protein motif:PFAM:PF09339" /note="KEGG: pol:Bpro_5250 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="regulatory protein IclR" /protein_id="YP_004387749.1" /db_xref="GI:330824446" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="GeneID:10482890" /translation="MDLNSGANPQRNTLGEDRAPMALTRVLHLLRLLADRPGGLSLAQ LSAALEAPKTSVLSLLRGLTAHCYLQRKDGLYRLGPESLAMGAQLVAARQSEAAERRA PRAPQSSSSACFDAMCQQVLQGRPHRTVRRDHHMEAARQ" gene 1960337..1961089 /locus_tag="Alide2_1853" /db_xref="GeneID:10482891" CDS 1960337..1961089 /locus_tag="Alide2_1853" /inference="protein motif:PFAM:PF01012" /note="KEGG: azo:azo2492 electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein subunit alpha/beta" /protein_id="YP_004387750.1" /db_xref="GI:330824447" /db_xref="InterPro:IPR014730" /db_xref="GeneID:10482891" /translation="MKVLVAVKRVLDYNVRARVKSDGSGVDLANQKMSMNPFDEIACE EAVRLREAGVASEVIAVSCGPAACQETLRSAMAMGADRAVLVETSEALEPLAVAKLMR HVAQKEGVTLAIFGKQAIDGDAGQTGQMFAALMGWPQATFASKVEAADGGLAVTREID GGLETLQLELPAVVTTDLRLNEPRFITLPSIMKAKKKPMEVLEAAALGIDIAPRLKTL KVMEPAARKAGVQVADVNGLVKKLKEEAKVIA" misc_feature 1960340..1960945 /locus_tag="Alide2_1853" /note="The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714" /db_xref="CDD:30169" misc_feature order(1960352..1960357,1960442..1960444,1960451..1960453, 1960523..1960525,1960679..1960684,1960688..1960693, 1960706..1960717) /locus_tag="Alide2_1853" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:30169" gene 1961086..1962027 /locus_tag="Alide2_1854" /db_xref="GeneID:10482892" CDS 1961086..1962027 /locus_tag="Alide2_1854" /inference="protein motif:PFAM:PF00766" /note="KEGG: tmz:Tmz1t_0422 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal" /codon_start=1 /transl_table=11 /product="Electron transfer flavoprotein subunit alpha" /protein_id="YP_004387751.1" /db_xref="GI:330824448" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR014731" /db_xref="GeneID:10482892" /translation="MSILVIAEHDNAALNPSTLNTLSAATRLGGDVRLLVAGSGCSAV ARSAAGIAGVAKVLLADAEHHQSQLAETLAELVVEVVRADADCTHVLAPSTSFGKNVL PRIAALLDVSQVSDVVAIETPDTFVRPFYAGNALARVQSSDRIKVLSIRTTAFDAALA GGGATIENVASTPRAHPHTRLVGREVVKSERPALAAASIVVSGGRGMGSAENFNAVLE PLADKLGAALGASRAAVDAGYAPNDFQVGQTGKIVAPTLYVAVAISGAIQHLAGMKDS KVIVAINKDPEAPIFQVADYGLAADLFTAVPELVTAL" misc_feature 1961089..1962024 /locus_tag="Alide2_1854" /note="electron transfer flavoprotein subunit alpha; Provisional; Region: PLN00022" /db_xref="CDD:177660" misc_feature 1961089..1961595 /locus_tag="Alide2_1854" /note="The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_alpha; cd01715" /db_xref="CDD:30170" misc_feature 1961656..1961916 /locus_tag="Alide2_1854" /note="Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766" /db_xref="CDD:189709" gene 1962062..1962832 /locus_tag="Alide2_1855" /db_xref="GeneID:10482893" CDS 1962062..1962832 /locus_tag="Alide2_1855" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: bxe:Bxe_C0269 enoyl-CoA hydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387752.1" /db_xref="GI:330824449" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482893" /translation="MTVRVEIDAGIARVTLDAPARRNALSAEMKDRLIATFQGFAEDD RVRAVILTGANNAFCSGADVTSFGASDIRGGRRRLASAHALIRAMVHLEKPIIAAVRG PAVGIGWSLALASDYILATPTAKFGQLFRNVGLAPDGGAAFLLAQYVGVLRAKELVMS ARIVTGEEAMRLNLLTELVAEDQLDQRASAIATDLAASAGLALGMAKRLFVGTAGVGI DAFLELESHVQNQLLASRDHKEGAAAFVAKRPPKFEGR" misc_feature 1962062..1962829 /locus_tag="Alide2_1855" /note="enoyl-CoA hydratase; Provisional; Region: PRK06688" /db_xref="CDD:180658" misc_feature 1962068..1962622 /locus_tag="Alide2_1855" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1962125..1962127,1962131..1962133,1962227..1962229, 1962239..1962253,1962368..1962370,1962374..1962382, 1962446..1962451,1962458..1962460) /locus_tag="Alide2_1855" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1962245..1962247,1962380..1962382) /locus_tag="Alide2_1855" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1962320..1962322,1962344..1962346,1962407..1962418, 1962452..1962463,1962479..1962481,1962485..1962493, 1962497..1962502,1962515..1962520,1962524..1962529, 1962533..1962538,1962545..1962547,1962578..1962580, 1962587..1962589) /locus_tag="Alide2_1855" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1962952..1963911 /locus_tag="Alide2_1856" /db_xref="GeneID:10482894" CDS 1962952..1963911 /locus_tag="Alide2_1856" /inference="protein motif:PFAM:PF03060" /note="PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bph:Bphy_0157 2-nitropropane dioxygenase NPD" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase NPD" /protein_id="YP_004387753.1" /db_xref="GI:330824450" /db_xref="GO:0018580" /db_xref="InterPro:IPR004136" /db_xref="GeneID:10482894" /translation="MGTLKILDGKLRLPVICSPMFTVSYPALVAAQCKAGVVGSFPAL NARPEPELGRWLTELKAELAAHAAANPHQKVAPFAVNQIIKKDNTRLEHDLAVCAKHQ VPITITSLRAPNELVQEIHGYGGVILHDVVNLRHAMKALEGGVDGLILVAAGAGGHAG RLNPIAFVNEVRKHYDGPIALSGTISNGAGILAAQAMGADYAYIGTRFIATTESNASE PYKQGVLQGNAEDVIYTDYFSGVHANYLRASIVAAGLDPENLPTSSGQRPLLRTSAWK DVWGVGQGIGSIADIPDVATLVARMEAEYQAARDKLLRSYEGA" misc_feature 1962952..1963893 /locus_tag="Alide2_1856" /note="Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]; Region: COG2070" /db_xref="CDD:32253" misc_feature 1962982..1963689 /locus_tag="Alide2_1856" /note="2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin...; Region: NPD_like; cd04730" /db_xref="CDD:73392" misc_feature order(1963006..1963011,1963198..1963200,1963276..1963278, 1963339..1963341,1963402..1963404,1963414..1963419, 1963495..1963503,1963558..1963569) /locus_tag="Alide2_1856" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature 1963420..1963425 /locus_tag="Alide2_1856" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature 1963423..1963425 /locus_tag="Alide2_1856" /note="putative catalytic residue [active]" /db_xref="CDD:73392" gene 1964047..1965024 /locus_tag="Alide2_1857" /db_xref="GeneID:10482895" CDS 1964047..1965024 /locus_tag="Alide2_1857" /inference="similar to AA sequence:KEGG:Vapar_0801" /note="KEGG: vap:Vapar_0801 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387754.1" /db_xref="GI:330824451" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482895" /translation="MKRRPFSALIALAAGCVLSGPLTVVAQAGYPDKTVRIVVPYPPG GATDLSARLLAGEMGKLLGQSVIVENKPGVAGVIGTDLVAKSPADGYTLVFGGAGNLT LRPIMDPKLSYKVDKDLQAISHVVTYDHLLVVRNGLPARNVQEFVQLAKDRKLSYGSS GSGGPQHLAMELFKSMTRTDMTHVPYKGESPAMLDLVGERVDAAIVSTAVAAQLVKGG KVRAIAAANPYRSRMFPELPTIAEAGVPGYEVEIYGGLLAPAHTPTPVIEKLQRAVVA AMKAPALQQQFTEAGLIPIGGTAADFTRLLKKEREKWEPIIKASGATLE" sig_peptide 1964047..1964127 /locus_tag="Alide2_1857" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.894 at residue 27" misc_feature 1964068..1965009 /locus_tag="Alide2_1857" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1964197..1965012 /locus_tag="Alide2_1857" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1965148..1966050) /locus_tag="Alide2_1858" /db_xref="GeneID:10482896" CDS complement(1965148..1966050) /locus_tag="Alide2_1858" /inference="protein motif:PFAM:PF00561" /note="PFAM: Alpha/beta hydrolase fold-1; KEGG: pla:Plav_2055 alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004387755.1" /db_xref="GI:330824452" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10482896" /translation="MLAADAATEPSALPEWAEAARAMPNREGFLEVDGSSIHYLAWGD AALPPLVLVHGNAASAEWWRFVAPLLADDHHVIAPDLGGMGDSSHCGRYARERYAEHV MAVADALAPGRPPVVVGHSLGGYVAIMAGCAHGERMAGLVVLDSPPREKDGATFASYV QSSPVPRIYPDRATALRRFRVLPDQPVTCDFYLEHIAQTAIKPEAGGWRWKFDPAALT HPRRLDYVDDLLRMRCPVALMWGALSARFGAWERQVSREQFDGRLPLVEIPNARHHVM LDEPLALVTALRAQLANWKAARTR" misc_feature complement(1965193..1965903) /locus_tag="Alide2_1858" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" misc_feature complement(<1965580..1965903) /locus_tag="Alide2_1858" /note="Putative serine esterase (DUF676); Region: DUF676; pfam05057" /db_xref="CDD:191180" gene complement(1966073..1967245) /locus_tag="Alide2_1859" /db_xref="GeneID:10482897" CDS complement(1966073..1967245) /locus_tag="Alide2_1859" /EC_number="5.1.99.4" /inference="protein motif:PRIAM:5.1.99.4" /note="manually curated; KEGG: mau:Micau_2811 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="alpha-methylacyl-CoA racemase" /protein_id="YP_004387756.1" /db_xref="GI:330824453" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482897" /translation="MALKGGPLAGVRVVELAGIGPGPMCGMLLADMGAQVLLVERLEP ANIGIARPRRFELPHRGKRSLAVDLKQADGVALVSDLAAAADVLIEGFRPGTMERLGL GPQACMARHPGLVYGRMTGYGQDGPLHELAGHDLNYLALSGALHALGPADGKPAAPLN LLADYAGGALNLAFGIACALVERNRSGLGQVIDASMVEGTAVLMTSMFGMYAAGLHAA PRGHNLLDGGAPHYATYACADGAYIAFAAIEPKFRAVFAERTGLPPEALARLDDPSTW QEGRAMLAELFATRTRGEWCELLEDSDACVTPVLDRDEAPRHPHNAARGSFVLQDGVT QPAPAPRFSRTPGAVGAAPPKRGAGGEATAAAWGIPAARLQALRAAGVIGPDATTS" misc_feature complement(1966097..1967245) /locus_tag="Alide2_1859" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1967236..1968531) /locus_tag="Alide2_1860" /db_xref="GeneID:10482898" CDS complement(1967236..1968531) /locus_tag="Alide2_1860" /inference="similar to AA sequence:KEGG:RPA4552" /note="KEGG: rpa:RPA4552 4-hydroxybutyrate-CoA transferase/hydrolase" /codon_start=1 /transl_table=11 /product="4-hydroxybutyrate-CoA transferase/hydrolase" /protein_id="YP_004387757.1" /db_xref="GI:330824454" /db_xref="GeneID:10482898" /translation="MTQPGPLVAAAGFSFHGLLRPGDHIVCGQAAAEPLTLTRKLVAE GPGVAEATVFLGATMTRTFDGPLPASLRFLSYGTLGHNASLADRGLLEVLPDRYSRIA PLFRSGQLRADVVLLQLAPGPAGRRPSLGLAHDYCVDAARRARLVVAELNPDVPWTHG AELPPDLRIDHWVQAEAGPLALPAAAGSEVELAIGRHVAGLVPDGATLQAGFGSLPDA LFLQLRQHRDLGLHSGVFGDAAALLVQQGALTNARKGMDAGVSVTNTVIGTADLYRWV HDNPGVQVRPGTSTHAPEVLARMHCLHAVNGALQVDLTGQVNSEAVGGRQRGGIGGLL DFCQAARQSDSGGRAITVLPATAEGGRRSRIVVDLDGPATVGRADVDVVVTEFGVADL RHATLGQRAERLIAIAAPAFRNSLRHAWRLSTWGQRAWH" misc_feature complement(1967281..1968498) /locus_tag="Alide2_1860" /note="Acetyl-CoA hydrolase [Energy production and conversion]; Region: ACH1; COG0427" /db_xref="CDD:30776" gene complement(1968554..1970008) /locus_tag="Alide2_1861" /db_xref="GeneID:10482899" CDS complement(1968554..1970008) /locus_tag="Alide2_1861" /inference="protein motif:PFAM:PF03972" /note="PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C7308 MmgE/PrpD" /codon_start=1 /transl_table=11 /product="MmgE/PrpD family protein" /protein_id="YP_004387758.1" /db_xref="GI:330824455" /db_xref="GO:0047547" /db_xref="InterPro:IPR005656" /db_xref="GeneID:10482899" /translation="MATLVEQLAAFTQVRHADLPPAVVAECKRLLLDSIGAALAATDS PKGRIGIDYGRLQGATGRATIIGTGDRLNIFGAAFANAELINALDMDAILPPGHVTPY VLPGALAVAEERGLGGQDVLRAIAVAHEMSWRLGKAMDYLRDTQDGKVATPPVYGYSS TVFGATAAIGMLQGLSTEVMAHALGIAGSISPVNAQMAWFDHAPSSTIKYLLGGALTQ AALTAAHMAALGHRGDRMLLDDREVGYARFMGTRRWEPEVITAGLGREWHFPGETSYK PYAHCRVLHALADVLIDIVRTQALRREEIDGIKVWVEGMVERPIWLNREIHDVMDAQF SIAHGIALAAHCPPTARAWQDPALVFQPSVLALMEKVTHEVHPDYVKLLTGHGGSRPA RVEVRARGTTFTGEKRFPKGSPSPDPSTAMTDAELIAKFRDNAEGRLAPAQADALVDA VFGLEAVRDFGTLMALTAPAPRHPPATAPSAALA" misc_feature complement(1968680..1970008) /locus_tag="Alide2_1861" /note="MmgE/PrpD family; Region: MmgE_PrpD; cl00912" /db_xref="CDD:186254" gene complement(1970044..1971018) /locus_tag="Alide2_1862" /db_xref="GeneID:10482900" CDS complement(1970044..1971018) /locus_tag="Alide2_1862" /inference="similar to AA sequence:KEGG:BB3950" /note="KEGG: bbr:BB3950 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387759.1" /db_xref="GI:330824456" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482900" /translation="MNLRSSLRGLLAGAALFGAACAAFAQTAATFPSRPMRIIVPFAA GTTTDQAARYIAQKITDHYKQPVVVDNRAGANGFIALQYLLSQPADGYTFTIGTNTTH AANSALFKKLPYDPVADFVPLSGVTIGGVVLVVAPSTPANNVQELLALAKTRKMTFGS GNSSSRAGGEVLRELAGVDLLHVPYKALPAAITDVIGGQIDMVFGDAPAVMPLVKAGK LKALGVSTKERMPGYEEIPTIAEQGVKGYETNGWLAAFAPKGTPPDIADKLSKMIADI MRTPEAAKYFGANAWKPIPSTREELAAFQKAELARWARLVKNAGIEPE" sig_peptide complement(1970941..1971018) /locus_tag="Alide2_1862" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.871 at residue 26" misc_feature complement(1970056..1970925) /locus_tag="Alide2_1862" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(1970056..1970865) /locus_tag="Alide2_1862" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1971089..1972354) /locus_tag="Alide2_1863" /db_xref="GeneID:10482901" CDS complement(1971089..1972354) /locus_tag="Alide2_1863" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: bbr:BB4584 hypothetical protein; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004387760.1" /db_xref="GI:330824457" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10482901" /translation="MTTPTASPTTPAAPLAGLRVLDLTRILAGPWATQNLADLGAEVI KIEHPNGGDDTRQMGPPFVRDQHSGEPVDAAYFLAANRGKQSVAIDIATPEGQKLVRA LAARCDILVENFKVGGLARYGLDYATLHAELPRLVYCSITGFGQTGPYKQRAGYDYLI QGMGGLMSVTGEPDDKPGGGPQRAGVALADVMSGMYAALGILAAMRHRDLTGIGQHLD IGMLDVQVAVLVNQSMNYLTTGKAPTRMGNGHPNIVPYQYFPASDGQFILAVGNDAQF RRAMQVLGLEAEAADPRFTTIALRVANRDALLPLMAERTRTRTVDEWVAAMESVDVPC GPINTIDRVFADPQVKARGMQLTLAHKRAGEIPSVANPMRFSETPIRYENAPPLLGQH TRDVLRRVLGASDAEIAEWIAQGFVKETP" misc_feature complement(1971104..1972306) /locus_tag="Alide2_1863" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(1972351..1973490) /locus_tag="Alide2_1864" /db_xref="GeneID:10482902" CDS complement(1972351..1973490) /locus_tag="Alide2_1864" /EC_number="1.3.99.2" /inference="protein motif:PRIAM:1.3.99.2" /note="KEGG: bur:Bcep18194_C7492 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain" /codon_start=1 /transl_table=11 /product="butyryl-CoA dehydrogenase" /protein_id="YP_004387761.1" /db_xref="GI:330824458" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR006092" /db_xref="GeneID:10482902" /translation="MNFLSPEQQLWKDTVDRVMQDEITREYVRECDVNRNYPYEAYEK VARMGWLRLLVPEENGGDGGSIFDYALMCEGLARYGFDFATAFMVSTFTAMNICKFGT REQQERFLPAFMKGDIRFSISISEPSAGSDAANTRTRSEETPEGWRITGQKLWCSGAA ARNTVIAMLTRSDKAAAKHKGLTVLLVPNDTPGLDIRRLPTMARRATGTTEIFADGAV VPPANLLGQPGDGWKIITDHLELERIAVSAAYVGNAQQAVSDALKYAHERIQFDKPIY DFQVIRHMLADMQTAVDAARLMVYRAADMASRGEPCQREVSMAKLIASETLQTVTRNG MQILGGHSMLPEADMERYFREGMQSTIGGGTSQIQRTLIAKSLSL" misc_feature complement(1972360..1973481) /locus_tag="Alide2_1864" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(1972360..1973475) /locus_tag="Alide2_1864" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature complement(order(1972390..1972392,1972396..1972398, 1972402..1972410,1973020..1973022,1973026..1973028, 1973119..1973121,1973125..1973127,1973215..1973217)) /locus_tag="Alide2_1864" /note="active site" /db_xref="CDD:173838" gene complement(1973518..1973964) /locus_tag="Alide2_1865" /db_xref="GeneID:10482903" CDS complement(1973518..1973964) /locus_tag="Alide2_1865" /inference="protein motif:PFAM:PF01575" /note="PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7491 MaoC-like dehydratase" /codon_start=1 /transl_table=11 /product="MaoC domain-containing protein dehydratase" /protein_id="YP_004387762.1" /db_xref="GI:330824459" /db_xref="GO:0016491" /db_xref="InterPro:IPR002539" /db_xref="GeneID:10482903" /translation="MMNLPYGELAIGQRARSRGRTITETDVVNFCGLTGNWLEIHANA EFAKKSMFGQRVVQGGLVFVISNALFGFDSAVVEAFYGVDKLRFLKPTFIGDTLHAES EIIAMRDKGDKHGVVTAQLWAVNQRSERVLSCEFTLLIRRERLIVD" misc_feature complement(1973545..1973952) /locus_tag="Alide2_1865" /note="The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509" /db_xref="CDD:193847" misc_feature complement(order(1973692..1973703,1973788..1973793)) /locus_tag="Alide2_1865" /note="active site 2 [active]" /db_xref="CDD:48035" misc_feature complement(order(1973719..1973727,1973761..1973766, 1973773..1973775)) /locus_tag="Alide2_1865" /note="active site 1 [active]" /db_xref="CDD:48035" gene 1974158..1974652 /locus_tag="Alide2_1866" /db_xref="GeneID:10482904" CDS 1974158..1974652 /locus_tag="Alide2_1866" /inference="similar to AA sequence:KEGG:Bpet1156" /note="KEGG: bpt:Bpet1156 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387763.1" /db_xref="GI:330824460" /db_xref="GeneID:10482904" /translation="MKTPILKDKNGLQIMGVGLHWNDVEVGDRFRTLGKTITEADIAM YVAAVGMVEEMFTNVEYIKEVSVIGSRPVPGSLVFCTAEGLLMQSTMQRTGMAFLEAD VKVHKPTTAGDTIHVECEVVEARATSKADRGLLRTSNKVVNQRGEVVLTYNPLRMVKT RPAA" misc_feature 1974215..1974613 /locus_tag="Alide2_1866" /note="The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509" /db_xref="CDD:193847" misc_feature order(1974377..1974382,1974470..1974481) /locus_tag="Alide2_1866" /note="active site 2 [active]" /db_xref="CDD:48035" misc_feature order(1974395..1974397,1974404..1974409,1974416..1974418, 1974449..1974457) /locus_tag="Alide2_1866" /note="active site 1 [active]" /db_xref="CDD:48035" gene 1974694..1975665 /locus_tag="Alide2_1867" /db_xref="GeneID:10482905" CDS 1974694..1975665 /locus_tag="Alide2_1867" /inference="similar to AA sequence:KEGG:Bpet1157" /note="KEGG: bpt:Bpet1157 putative secreted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387764.1" /db_xref="GI:330824461" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10482905" /translation="MQSRTLAALALSFAAMLGIGGNASAQAAYPTQPIKIVLPFAAGS PTDAILRVIAGPLGKRLGQSVVVDNKPGATGLIGTEFAARAAPDGYTLLFGTNTTQVA NQYFFKKLPYDGEKDFTPVAIVGGVPHVLVVNPSLPVNSVPELIAYARSHPGKISFPY ANSTTRITGSTFRVMTKTNLVEIPYKAYGQAVTDLLGGQTQMMFIDFTTGLEHIRAGK LKALGVTPERSAKLPGVPAMKEVLPGFEIGNWNGLFAPAGTPKAVVDRLNREMAAVLA IPEVQKQIDATGYELLRQMSPAEFGKFIAAESVHWGKLVKAAGVEAE" sig_peptide 1974694..1974777 /locus_tag="Alide2_1867" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.514 at residue 28" misc_feature 1974745..1975653 /locus_tag="Alide2_1867" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 1974838..1975650 /locus_tag="Alide2_1867" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1975662..1976480 /locus_tag="Alide2_1868" /db_xref="GeneID:10482906" CDS 1975662..1976480 /locus_tag="Alide2_1868" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: bpt:Bpet1158 putative enoyl-CoA hydratase/isomerase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387765.1" /db_xref="GI:330824462" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482906" /translation="MNGGRAASVIPGTSEAPVRYDVEDGVATVCIDRPAQRNALSLAV CERLLEIWDDVESNDAVRVAIITSSDCGTFSAGMDLKEAAKVRAETGKDMLQLLRDPF HERMRRVSKPIIAAMTGHFTAGGMVLAANSDLRVGMQGTRGGISESKVGRGSPWGVPM LWMLPQPFLLELMFTGEMIPIERFHQLGFVNYVEADPDAVRARARELARAIAANAPLT IWAAKKSVGAAMDLGCEQGLQAAKRFHERVYASQDAIEGPRAFAEKRAPRWIGA" misc_feature 1975713..1976474 /locus_tag="Alide2_1868" /note="enoyl-CoA hydratase; Provisional; Region: PRK08252" /db_xref="CDD:181325" misc_feature 1975713..1976255 /locus_tag="Alide2_1868" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1975770..1975772,1975776..1975778,1975875..1975877, 1975887..1975901,1976019..1976021,1976025..1976033, 1976097..1976102,1976109..1976111) /locus_tag="Alide2_1868" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1975893..1975895,1976031..1976033) /locus_tag="Alide2_1868" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1975971..1975973,1975995..1975997,1976058..1976069, 1976103..1976114,1976130..1976132,1976136..1976138, 1976142..1976147,1976160..1976165,1976169..1976174, 1976178..1976183,1976190..1976192,1976223..1976225, 1976232..1976234) /locus_tag="Alide2_1868" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 1976477..1977313 /locus_tag="Alide2_1869" /db_xref="GeneID:10482907" CDS 1976477..1977313 /locus_tag="Alide2_1869" /inference="protein motif:PFAM:PF00378" /note="PFAM: Crotonase, core; KEGG: axy:AXYL_06657 enoyl-CoA hydratase/isomerase family protein 35" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004387766.1" /db_xref="GI:330824463" /db_xref="GO:0003824" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10482907" /translation="MSGPAARPFVQASRQGDVVTLRLDHPETLNRLASEAQFLELAGQ IRSVAADTSVRALVITGQGAAFCAGGDIRNMAAREGFSAGTAADIEERYRRSVHQVPR ALSEIDIPTIAAVNGPAYGAGCDLACFCDIRLAARNASFSFSFVQLGIVPGDGGAWML PRLIGRSNAMEMAFTADPVDAETALRIGLVSQVVDGSQLLDRAHAIANRIAQHPARAV RMTKRLLRDAEHTTLAKHLDLAAAFQAIAHLTPEHLTAVEAVLARLQARGLPAARAEG AD" misc_feature 1976498..1977265 /locus_tag="Alide2_1869" /note="enoyl-CoA hydratase; Provisional; Region: PRK09245" /db_xref="CDD:181723" misc_feature 1976504..1977106 /locus_tag="Alide2_1869" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(1976561..1976563,1976567..1976569,1976666..1976668, 1976678..1976692,1976828..1976830,1976834..1976842, 1976906..1976911,1976918..1976920) /locus_tag="Alide2_1869" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(1976684..1976686,1976840..1976842) /locus_tag="Alide2_1869" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(1976780..1976782,1976804..1976806,1976867..1976878, 1976912..1976923,1976939..1976941,1976945..1976953, 1976957..1976962,1976975..1976980,1976984..1976989, 1976993..1976998,1977005..1977007,1977038..1977040, 1977047..1977049,1977092..1977094,1977101..1977106) /locus_tag="Alide2_1869" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(1977310..1978122) /locus_tag="Alide2_1870" /db_xref="GeneID:10482908" CDS complement(1977310..1978122) /locus_tag="Alide2_1870" /inference="protein motif:PFAM:PF09339" /note="KEGG: axy:AXYL_06658 transcriptional regulator family protein 40; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004387767.1" /db_xref="GI:330824464" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10482908" /translation="MVRKRDTKAFAQHSDRAHDPGAEVDSLRRGLELLRLFDARHRSL QAADIAAKLGLSRVTAAKLIATLESQNFLRPSSHGDGGFEPHVACLALGRAVKRSLPI VPVAKPRMLALSQRFGVHVTLSTRDRLHMLVVEHVVPSGQVRMGLDAGARLPLLSSAS GRAYLAAQPEPARSKLVKLIKADETQGAFRQATVDAAVHELEKRGWCFLASPVTSQTN SIATPIRAGASADYVLTAMAVGPDVKHDLRDEVAPDLLNQARQIAFELGAAG" misc_feature complement(1977781..1978053) /locus_tag="Alide2_1870" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1977319..1978047) /locus_tag="Alide2_1870" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(1977337..1977696) /locus_tag="Alide2_1870" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene complement(1978122..1978943) /locus_tag="Alide2_1871" /db_xref="GeneID:10482909" CDS complement(1978122..1978943) /locus_tag="Alide2_1871" /inference="protein motif:PFAM:PF09339" /note="KEGG: axy:AXYL_06659 transcriptional regulator family protein 41; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="YP_004387768.1" /db_xref="GI:330824465" /db_xref="GO:0003677" /db_xref="InterPro:IPR005471" /db_xref="InterPro:IPR014757" /db_xref="GeneID:10482909" /translation="MAVNLPAPPADAPARPSEVRVLARGLAILRAFEPANEWRTNTEL ATLTELPKPTVSRLTANLTESGYLIYSAERAAYRLSTSVLALGYVAASNRNLVVIARP LMQEFADQHNLSVVLGSPDGGSMVCNEVAHSRSLLFTLRVRVGSRLRMGQSALGRALI GSMGDAERDRVLARLEETDHETWSVLHGQLKTVVSQMQRRGYVIAAGTLERGTNGVAV VIDTPDGPHGFALGCAAPSGILSVSRIESEVAPDLLALKRRLEADLSVTADGPDS" misc_feature complement(1978617..1978889) /locus_tag="Alide2_1871" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1978152..1978886) /locus_tag="Alide2_1871" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature complement(1978155..1978532) /locus_tag="Alide2_1871" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene complement(1978995..1980938) /locus_tag="Alide2_1872" /db_xref="GeneID:10482910" CDS complement(1978995..1980938) /locus_tag="Alide2_1872" /EC_number="6.4.1.1" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4, 6.4.1.1" /note="PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: bpt:Bpet1154 putative biotin carboxylase subunit of propionyl-CoA carboxylase; SMART: Biotin carboxylase, C-terminal" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase, pyruvate carboxylase" /protein_id="YP_004387769.1" /db_xref="GI:330824466" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR005479" /db_xref="InterPro:IPR005481" /db_xref="InterPro:IPR005482" /db_xref="GeneID:10482910" /translation="MFKRVLIANRGEIACRIARTCRAMGIEYVGLYTDVDAAAPHLEG TAARVRIGTGPAAQSYLDIERIVAAARETGCDAVHPGYGFLSENSRFAAAVAAAGLTF VGPKPETIATLGDKARAKALMEAARVPVVPGGGDASDDPETVEAMVRRVGFPVLLKPS AGGGGKGMRVIADAAEVREAVASAIRVARSSFGDGRLIVERFIEQPRHIEVQVFGDSH GNVAHLFERECSLQRRHQKVVEEAPAPNLPEAVRSRLVEAAVRGARSVGYLNAGTFEF IVARDFQFYFLEVNTRLQVEHPVTESVTGLDLVEWQLRVAAGESLPLAQERIRCDGHA VECRIYAEDPAHDFRPSPGEVGAVRWPRHVRVEAGIAAGGVVPPFYDPMVAKLVTHAP SRETALARMVEALDETALMGLTTNIGYLRRVLVDAGVRAAQVHTRYLDEHGSRFATHG GTARAAACAATIGPRSATARHPWACAHVADRASLDPQAPLGRVHLWAGEQQLAAALQA RTADGFRVGVDDASWDVAAAQESDGLHRGRIGAGTWFAQWRQGLWELQVHGDRFPLQP ARTRRFDEAATAGLAVAPMSGTIAALPVAAGERVAEGATVAVVEAMKMEHRVVAAREG IVRALAFRVGDTVKAGELIVDIE" misc_feature complement(1978998..1980938) /locus_tag="Alide2_1872" /note="Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]; Region: COG4770" /db_xref="CDD:34383" misc_feature complement(1980612..1980935) /locus_tag="Alide2_1872" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature complement(1979970..1980596) /locus_tag="Alide2_1872" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(1979619..1979933) /locus_tag="Alide2_1872" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" misc_feature complement(1979001..1979195) /locus_tag="Alide2_1872" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature complement(order(1979076..1979078,1979097..1979105, 1979130..1979132)) /locus_tag="Alide2_1872" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature complement(1979100..1979102) /locus_tag="Alide2_1872" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene complement(1980941..1982545) /locus_tag="Alide2_1873" /db_xref="GeneID:10482911" CDS complement(1980941..1982545) /locus_tag="Alide2_1873" /EC_number="6.4.1.4" /inference="protein motif:PRIAM:6.4.1.4" /note="KEGG: bpt:Bpet1153 putative propionyl-CoA carboxylase beta subunit; PFAM: Carboxyl transferase" /codon_start=1 /transl_table=11 /product="methylcrotonoyl-CoA carboxylase" /protein_id="YP_004387770.1" /db_xref="GI:330824467" /db_xref="InterPro:IPR000022" /db_xref="GeneID:10482911" /translation="MAVLRSSLRTADPAYAANSAAYARLQEQVAAARTAAVAGGGSQA SQAHLKRDKLLPRHRINVLLDPGTPFLEIGQLAAHGLYEGAVPSAGIITGIGIVEGRP CMVMANDATVKGGTYYPLTIKKQVRAQAIARENGLPCIYLVDSGGAFLPLQEDIFPDE NHFGRIFRNIAEMSSMGLKQIAAVMGQCTAGGAYIPAMCDETIIVQGNGTIYLGGPQL VQAATGEVVDHQTLGGADVHTRMSGVADHLARDELHALSTVREIVARPGPGRIASPPL APAEPLYAPSELPGLIPENPKQPIPAREILARILDGSELNEYRERYGSTLICGTGAIG GYPVGVLINDGVLFSESAQKAANFIELCSQSAIPLVFLHNISGFMVGVSYEQGGIAKD GAKMVNAVSTSRVPKFSVIVGGSYGAGAYAMCGRAFGPRLMAAWPNARTSVMGGEQAA TVLALVREEQLARKGQRFTPEDAEAYKQPIRERYAAESTAVNAASKLWVDAVIDPADT RAWLAMGLSLAAASPQQDTRFGVFRM" misc_feature complement(1980944..1982404) /locus_tag="Alide2_1873" /note="Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]; Region: COG4799" /db_xref="CDD:34408" misc_feature complement(<1981928..>1982275) /locus_tag="Alide2_1873" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" misc_feature complement(<1981187..>1981573) /locus_tag="Alide2_1873" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene complement(1982548..1982859) /locus_tag="Alide2_1874" /db_xref="GeneID:10482912" CDS complement(1982548..1982859) /locus_tag="Alide2_1874" /inference="similar to AA sequence:KEGG:Bpet1152" /note="KEGG: bpt:Bpet1152 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387771.1" /db_xref="GI:330824468" /db_xref="GeneID:10482912" /translation="MAKIVRDIAYVRSGDKGDVCTAGVIARTPADYAVLKASVTPAAV KSLYGDWVRGDVHCYPMDNIEAVVVVMERALGGGATKTLRLDQTGKSLGYALLRLPVL D" gene complement(1982870..1984246) /locus_tag="Alide2_1875" /db_xref="GeneID:10482913" CDS complement(1982870..1984246) /locus_tag="Alide2_1875" /inference="protein motif:PFAM:PF07287" /note="PFAM: Protein of unknown function DUF1446; KEGG: bpt:Bpet1151 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387772.1" /db_xref="GI:330824469" /db_xref="InterPro:IPR010839" /db_xref="GeneID:10482913" /translation="MKKVVRLGAGSGFWGDAMDPAVELLERGELDYLCFDFLAELTMA LLQRQKLKNPQMGYVPDAVTYMNAMLKTARDRGTKLISNGGGVNPRAAAERIAEGARA AGLQGTRIALVEGDDLLHKLDDLIAQRVPMVNMDTGDSDFAAIRSRVVSANVYTDSTG IVEGLAGGADVVIAGRVSDNAVYVGPLAHEFGWARDAAHVNRFASAVTLGHIVECAAA CTGGMSSRFAEMPNMGRVGFPIVEFSADGSAEVTKLAGTGGRVDLFTIKEHLVYEIAD PRSYLMPDAVADFTSLKLEQAGEDRVRVSGITGRPAPDMLKLVVGYQDGWIGESMAFF PWPNAFDRAVKARQTMLERFERMGLEASQVHFDFIGVNMLHGPGAPKPDPAVANQLPE VGLRCAVRTRTAEEADKVRRAGSHLWIMGPGGTSFGTPMKPRPVISLWPTLIPRSFVE QKTEILVS" misc_feature complement(1983137..1984228) /locus_tag="Alide2_1875" /note="Protein of unknown function (DUF1446); Region: DUF1446; pfam07287" /db_xref="CDD:191720" gene 1984420..1984806 /locus_tag="Alide2_1876" /db_xref="GeneID:10482914" CDS 1984420..1984806 /locus_tag="Alide2_1876" /inference="protein motif:TFAM:TIGR00369" /note="KEGG: reh:H16_B1907 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily" /codon_start=1 /transl_table=11 /product="phenylacetic acid degradation-like protein" /protein_id="YP_004387773.1" /db_xref="GI:330824470" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10482914" /translation="MDSPFLGMLGVELVELRQDWCVLELEVHPRHCNRRGTLHGGMIS ALLDAGCVYAAITLNDESALAGGATVMLSVNFTSEAQSGTRIRVEALVERRGRGITFC SGRLLGPEGDLIAASHCAVKVYRAPE" misc_feature 1984441..1984788 /locus_tag="Alide2_1876" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(1984531..1984533,1984624..1984626,1984645..1984656) /locus_tag="Alide2_1876" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(1984534..1984536,1984540..1984542,1984549..1984551, 1984627..1984641,1984645..1984647) /locus_tag="Alide2_1876" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(1984537..1984539,1984561..1984566,1984573..1984578, 1984624..1984626) /locus_tag="Alide2_1876" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(1984836..1985573) /locus_tag="Alide2_1877" /pseudo /db_xref="GeneID:10482915" gene 1985576..1986172 /locus_tag="Alide2_1878" /pseudo /db_xref="GeneID:10482916" gene complement(1986223..1987026) /locus_tag="Alide2_1879" /db_xref="GeneID:10482917" CDS complement(1986223..1987026) /locus_tag="Alide2_1879" /inference="protein motif:PFAM:PF01695" /note="KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="IstB domain-containing protein ATP-binding protein" /protein_id="YP_004387774.1" /db_xref="GI:330824471" /db_xref="GO:0005524" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482917" /translation="MRHDPAIASIVIMLRELKMHGMAQAVAELAEQGAPAFDAAQPIL SQLLKAETAEREVRSVAYQLKVARFPAYRDLAGFDFSHSEVNEALVRQLHRCEFLENA NNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEEEKAQGKPGQIAH RLAYADLVILDELGYLPFSTSGGALLFHLLSKLYERTSVVITTNLSFSEWANVFGDAK MTTALLDRLTHHCHILETGNDSYRFKNSSAQQPPQTTKKEKATKNLSTT" misc_feature complement(1986295..1986999) /locus_tag="Alide2_1879" /note="transposase/IS protein; Provisional; Region: PRK09183" /db_xref="CDD:181681" misc_feature complement(1986328..1986771) /locus_tag="Alide2_1879" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(1986679..1986702) /locus_tag="Alide2_1879" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(1986415..1986417,1986514..1986516, 1986676..1986699)) /locus_tag="Alide2_1879" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(1986511..1986528) /locus_tag="Alide2_1879" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(1986349..1986351) /locus_tag="Alide2_1879" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(1987016..1988542) /locus_tag="Alide2_1880" /db_xref="GeneID:10482918" CDS complement(1987016..1988542) /locus_tag="Alide2_1880" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004387775.1" /db_xref="GI:330824472" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10482918" /translation="MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLRVGEA EPHYAKRVSPSKLDPFALKLAGWLKTEAGRSRKQRRTVKQMYVDLQALGYGGSYNRVA AFARLWHEQRLVAQQTTGRGTFVPLAFGPGEAFQFDWSEDWAVLAGVRTKLQVAHFKL SHSRAFYLRAYPLQTHEMLFDAHNHAFAVLGGVPRRGIYDNMRTAVDRVRRGKERDVN ARFAAMVSHFLFEAEFCNPASGWEKGQVEKNVRDARHRLWQVVPPFLSLSDLNAWLEE RCVALWHEIEHGKLPGTVADVWAQEKATLMPMPRPFDGFVEHTKRVSPTCLVHFERNR YSVPAPYANRPVSLRVYADRLVVAAEGQIVCEHQRLIERNHHGAGQTVYDWRHYLAVL QRKPGALRNGAPFLELPAAFKRLQAALLKQPGGDREMVEVLALVLHHDEQAVLAAVEL ALESGAASKTHILNVLHRLLDGKPAPAPVTSPQALKLSVEPQANVLRYDQLREVRYAS " misc_feature complement(1987676..1988521) /locus_tag="Alide2_1880" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584" /db_xref="CDD:34222" misc_feature complement(1987772..1988161) /locus_tag="Alide2_1880" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 1988654..1988755 /locus_tag="Alide2_1881" /pseudo /db_xref="GeneID:10482919" gene 1988887..1989426 /locus_tag="Alide2_1882" /db_xref="GeneID:10482920" CDS 1988887..1989426 /locus_tag="Alide2_1882" /inference="similar to AA sequence:KEGG:Tmz1t_0992" /note="KEGG: tmz:Tmz1t_0992 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387776.1" /db_xref="GI:330824473" /db_xref="GeneID:10482920" /translation="MTALTPSAHFVPLEQTDFRRLEHAAYLKGLLQPFKGKGSLETWA SQCAALRDDLIGLAQRRVLPQARAYPFSLLDVQLAQQATGAGTTFLRWRNLDRSSMGV ALWEALLANPATPGSLIDELYAIELQRIVLNMQISLTHSIARQALECANKAAQAEAAY LRRVHGRTASVPPTTKESP" misc_feature 1988914..1989396 /locus_tag="Alide2_1882" /note="Protein of unknown function (DUF3158); Region: DUF3158; pfam11358" /db_xref="CDD:151799" gene 1989423..1989806 /locus_tag="Alide2_1883" /db_xref="GeneID:10482921" CDS 1989423..1989806 /locus_tag="Alide2_1883" /inference="protein motif:PFAM:PF00436" /note="PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein" /codon_start=1 /transl_table=11 /product="single-strand binding protein/Primosomal replication protein n" /protein_id="YP_004387777.1" /db_xref="GI:330824474" /db_xref="GO:0003697" /db_xref="InterPro:IPR000424" /db_xref="GeneID:10482921" /translation="MSTHFVGEGNIGSAPDYREFPNGNDEPRRLLRLNVYFDNPIPKK DGEYEDRGGFWAPVELWHRDADHWKTLYQKGMRVLVEGRTVRDEWEDADENERVTFKV EARRVGILPYRIESVALSAKPAGGQ" misc_feature 1989435..1989752 /locus_tag="Alide2_1883" /note="SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496" /db_xref="CDD:72968" misc_feature order(1989435..1989446,1989531..1989539,1989582..1989584, 1989588..1989590,1989651..1989653,1989678..1989680, 1989711..1989713,1989720..1989722) /locus_tag="Alide2_1883" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:72968" misc_feature order(1989450..1989458,1989474..1989476,1989516..1989518, 1989537..1989542,1989576..1989581,1989585..1989587, 1989591..1989593,1989597..1989599,1989603..1989605, 1989642..1989647,1989669..1989671,1989675..1989677, 1989681..1989686,1989723..1989725,1989729..1989731) /locus_tag="Alide2_1883" /note="ssDNA binding site [nucleotide binding]; other site" /db_xref="CDD:72968" misc_feature order(1989651..1989653,1989657..1989659,1989663..1989665, 1989744..1989746) /locus_tag="Alide2_1883" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:72968" gene 1990101..1992131 /locus_tag="Alide2_1884" /db_xref="GeneID:10482922" CDS 1990101..1992131 /locus_tag="Alide2_1884" /EC_number="5.99.1.2" /inference="protein motif:TFAM:TIGR01056" /note="SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger" /codon_start=1 /transl_table=11 /product="DNA topoisomerase III" /protein_id="YP_004387778.1" /db_xref="GI:330824475" /db_xref="GO:0003677" /db_xref="GO:0003916" /db_xref="InterPro:IPR003601" /db_xref="InterPro:IPR003602" /db_xref="InterPro:IPR005738" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR013497" /db_xref="InterPro:IPR013498" /db_xref="GeneID:10482922" /translation="MRVFLCEKPSQGKDIARVLGAGQRGNGCYSGASVVVTWCIGHLV EAVPPEGYGEQYKRWAIEQLPIVPERWRVEPKAATVAQFKVVQQLVAKAGELVIATDA DREGEMIAREIIDLCGYRGPIQRLWLSALNDASIRKALGALKPSAETMPLYFSALARS RADWLIGMNLSRLFTLLGRQAGYNGVLSVGRVQTPTLKLVVDRDREIARFVSVPFWAT EVALSHAGQTFVASWTPPQGSTDEAGRCLRQPVAQQAAERLRAAGTAQVLSVETERVR EGPPLPFDLGTLQEVCSKQLGLDVQETLDIAQALYETHKATTYPRSDSGHLPESMLAE VPAVLDSLVKTDPSLRPLIDRLDRQQRSRAWNDGKVTAHHGIIPTLEPANLSAMTEKE LAVYRLIRAHYLAQFLPHHEFDRTVAQLTCGGQSLVAVGKQIATAGWRQVLAAPALDD TDGEDARRGQVLPALKAGDACQVSQVELKALKTLPPKPYTQGELVKAMKGVAKLVTDP RLKQKLKDTTGIGTEATRANIISGLLARGYLLKKGRAIRASDAAFTLIDAVPAAIADP GTTAVWEHALDMIEAGQMALDTFIAKQSSWVARLVQQYRGATLDLKLPPAPDCPQCGA PMRQRSSKSGVFWSCSRYPDCKGTQPVEDAAAGKRGASSRTYRAPRRRLQAN" misc_feature 1990101..1992116 /locus_tag="Alide2_1884" /note="DNA topoisomerase III; Provisional; Region: PRK07726" /db_xref="CDD:181093" misc_feature 1990101..1990529 /locus_tag="Alide2_1884" /note="TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by:...; Region: TOPRIM_TopoIA_TopoIII; cd03362" /db_xref="CDD:173782" misc_feature order(1990119..1990124,1990131..1990133,1990401..1990403, 1990407..1990409,1990413..1990415) /locus_tag="Alide2_1884" /note="active site" /db_xref="CDD:173782" misc_feature order(1990140..1990142,1990404..1990406,1990410..1990412, 1990431..1990436,1990440..1990445) /locus_tag="Alide2_1884" /note="putative interdomain interaction site [polypeptide binding]; other site" /db_xref="CDD:173782" misc_feature order(1990401..1990403,1990407..1990409) /locus_tag="Alide2_1884" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173782" misc_feature 1990410..1990412 /locus_tag="Alide2_1884" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173782" misc_feature 1990548..1991903 /locus_tag="Alide2_1884" /note="DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded...; Region: TOP1Ac; cd00186" /db_xref="CDD:73184" misc_feature order(1990548..1990631,1990659..1990721) /locus_tag="Alide2_1884" /note="domain I; other site" /db_xref="CDD:73184" misc_feature order(1990575..1990580,1990587..1990589,1990599..1990601, 1990611..1990613,1991022..1991024,1991034..1991036, 1991061..1991063,1991670..1991675,1991682..1991687, 1991691..1991693,1991703..1991708) /locus_tag="Alide2_1884" /note="DNA binding groove [nucleotide binding]" /db_xref="CDD:73184" misc_feature order(1990692..1990694,1990704..1990706,1991778..1991780) /locus_tag="Alide2_1884" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73184" misc_feature order(1990734..1990757,1990890..1990934,1991325..1991369, 1991373..1991429,1991520..1991552) /locus_tag="Alide2_1884" /note="domain II; other site" /db_xref="CDD:73184" misc_feature order(1990935..1990955,1990959..1991045,1991049..1991126, 1991214..1991240,1991262..1991324) /locus_tag="Alide2_1884" /note="domain III; other site" /db_xref="CDD:73184" misc_feature order(1990968..1990970,1990980..1990988,1991217..1991219, 1991280..1991282,1991289..1991291,1991301..1991303, 1991664..1991666,1991670..1991672,1991736..1991738) /locus_tag="Alide2_1884" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:73184" misc_feature order(1991055..1991057,1991061..1991063,1991217..1991219) /locus_tag="Alide2_1884" /note="catalytic site [active]" /db_xref="CDD:73184" misc_feature order(1991553..1991594,1991646..1991726,1991736..1991780, 1991787..1991903) /locus_tag="Alide2_1884" /note="domain IV; other site" /db_xref="CDD:73184" misc_feature 1991952..1992059 /locus_tag="Alide2_1884" /note="Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; cl11977" /db_xref="CDD:143760" gene complement(1992657..1993487) /locus_tag="Alide2_1885" /db_xref="GeneID:10482923" CDS complement(1992657..1993487) /locus_tag="Alide2_1885" /inference="protein motif:TFAM:TIGR00014" /note="KEGG: mpt:Mpe_A2343 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like; GCN5-related N-acetyltransferase (GNAT) domain" /codon_start=1 /transl_table=11 /product="arsenate reductase" /protein_id="YP_004387779.1" /db_xref="GI:330824476" /db_xref="GO:0008794" /db_xref="InterPro:IPR000182" /db_xref="InterPro:IPR006659" /db_xref="InterPro:IPR006660" /db_xref="GeneID:10482923" /translation="MSSVMIYHNPDCGTSRNTLALIRASGIEPTVIEYLKAPPDRETL NALIARMGMRVRDVLRVKGTPHKELGLDAAHWNDDQLIDQMLAHPILINRPIVVSPLG VRLCRPSDMVVELLPKRPAEEIRKEDGTSLLVDTPIAGSDPDLALALHEASLPTDDLT EPGRRFFAYATVSGERVGFGGFEHMGRDVLGRSLVVLPQARHRGIGSGMLALLLRRAF DEGGREAWLLTTTAAPFFERAGFNPAERAATPAAILATRQAASLCRSSAALLSRRMML " misc_feature complement(1993143..1993478) /locus_tag="Alide2_1885" /note="Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the...; Region: ArsC_ArsC; cd03034" /db_xref="CDD:48583" misc_feature complement(order(1993167..1993169,1993206..1993208, 1993308..1993310,1993452..1993454)) /locus_tag="Alide2_1885" /note="catalytic residues [active]" /db_xref="CDD:48583" misc_feature complement(1992729..>1992914) /locus_tag="Alide2_1885" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(1993484..1994575) /locus_tag="Alide2_1886" /db_xref="GeneID:10482924" CDS complement(1993484..1994575) /locus_tag="Alide2_1886" /inference="protein motif:TFAM:TIGR00832" /note="KEGG: mpt:Mpe_A2344 ACR3 permease; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter" /codon_start=1 /transl_table=11 /product="arsenical-resistance protein" /protein_id="YP_004387780.1" /db_xref="GI:330824477" /db_xref="InterPro:IPR002657" /db_xref="InterPro:IPR004706" /db_xref="GeneID:10482924" /translation="MAVQTEAVVAAPSLSMSVFERYLTVWVLLCIVAGIALGQAAPGA FQTVGRMEVARVNLPVGLLIWVMVIPMLLKVDFGALGQVRQHWRGIGVTLFVNWAVKP FSMALLAWLFIRQVFADWLPADQLDSYVAGLILLAAAPCTAMVFVWSRLTGGDPVFTL SQVALNDTIMVFAFAPIVALLLGLSAITVPWDTLLTSVALYIVIPVILAQVWRRALLR RGQAAFDGALARIGPLSIAALLLTLVLLFAFQGQAILQQPLVIAMLAVPILIQVFFNS GLAYWLNHRVGEKHNIAGPSALIGASNFFELAVAAAISLFGFHSGAALATVVGVLIEV PVMLLVVRVVNRSRGWYEQAPRNVMRHPA" misc_feature complement(1993577..1994530) /locus_tag="Alide2_1886" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene complement(1994585..1995082) /locus_tag="Alide2_1887" /db_xref="GeneID:10482925" CDS complement(1994585..1995082) /locus_tag="Alide2_1887" /inference="protein motif:PFAM:PF01451" /note="KEGG: mpt:Mpe_A2345 arsenate reductase, putative; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight" /codon_start=1 /transl_table=11 /product="protein tyrosine phosphatase" /protein_id="YP_004387781.1" /db_xref="GI:330824478" /db_xref="GO:0004725" /db_xref="InterPro:IPR017867" /db_xref="GeneID:10482925" /translation="MTTEKTYNALFICTGNSARSILAEGILDELGQGRFHAYSAGSHP KGEVQLLALATLERLHLPTTGYRSKSWDEFVAPGAPVFDFIFTVCDNAAGEVCPVWPG KPVSAHWGVPDPAAVEGSEEQQRKAFMDAALTLKRRIELFLSLPLQRLDAMSLQHELR DIGKQ" misc_feature complement(1994654..1995064) /locus_tag="Alide2_1887" /note="Low molecular weight phosphatase family; Region: LMWPc; cl00105" /db_xref="CDD:193660" misc_feature complement(order(1995023..1995031,1995035..1995040, 1995044..1995046)) /locus_tag="Alide2_1887" /note="Active site [active]" /db_xref="CDD:29014" gene complement(1995095..1995559) /locus_tag="Alide2_1888" /db_xref="GeneID:10482926" CDS complement(1995095..1995559) /locus_tag="Alide2_1888" /inference="protein motif:PFAM:PF00903" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A2346 hypothetical protein" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004387782.1" /db_xref="GI:330824479" /db_xref="InterPro:IPR004360" /db_xref="GeneID:10482926" /translation="MKRFHVHLHVDDLNRSIGFYSQLFAAQPARTESDYAKWMLEDPP VNFAISTRGSKPGIDHLGIQTDDAEELAALKARAQAADMALLDEGTTTCCYARSEKHW ITDPQGVAWEHFHTLDNIPVFNEAPQPAPDAAPACCAPRDSRATAKQASSCC" misc_feature complement(1995203..1995556) /locus_tag="Alide2_1888" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_20; cd07254" /db_xref="CDD:176677" misc_feature complement(order(1995224..1995226,1995380..1995382, 1995545..1995547)) /locus_tag="Alide2_1888" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176677" gene complement(1995572..1995901) /locus_tag="Alide2_1889" /db_xref="GeneID:10482927" CDS complement(1995572..1995901) /locus_tag="Alide2_1889" /inference="protein motif:SMART:SM00418" /note="SMART: HTH transcriptional regulator, ArsR; KEGG: mpt:Mpe_A2347 ArsR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein ArsR" /protein_id="YP_004387783.1" /db_xref="GI:330824480" /db_xref="GO:0003700" /db_xref="InterPro:IPR001845" /db_xref="GeneID:10482927" /translation="MNETQAISALGALAHTQRLRVFRALVVAGPEGLTPSVLADQLDV ARNTLSFHLKELAHAGLVSIEQQGRNLIYRADFAHMNGLLGYLTEHCCQGGVCEANEP SRACTTC" misc_feature complement(1995674..1995868) /locus_tag="Alide2_1889" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature complement(order(1995683..1995691,1995704..1995712, 1995728..1995733,1995737..1995742,1995749..1995754, 1995758..1995769,1995794..1995802,1995848..1995856, 1995866..1995868)) /locus_tag="Alide2_1889" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(1995791..1995793,1995800..1995802)) /locus_tag="Alide2_1889" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene 1996153..1996479 /locus_tag="Alide2_1890" /db_xref="GeneID:10482928" CDS 1996153..1996479 /locus_tag="Alide2_1890" /inference="similar to AA sequence:KEGG:Rpic12D_0655" /note="KEGG: rpf:Rpic12D_0655 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387784.1" /db_xref="GI:330824481" /db_xref="GeneID:10482928" /translation="MFNPSGVFRSRQGVVLPVFNHQEMPMSLAFASAPLSAEQARAES IGYQALAYVGKRLPLQVLCSAAGHYIGTADADGPVSRESVSYFRSHHAAEHALQTGRW QQRLHP" gene 1996505..1996897 /locus_tag="Alide2_1891" /db_xref="GeneID:10482929" CDS 1996505..1996897 /locus_tag="Alide2_1891" /inference="similar to AA sequence:KEGG:Rpic12D_0656" /note="KEGG: rpf:Rpic12D_0656 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387785.1" /db_xref="GI:330824482" /db_xref="GeneID:10482929" /translation="MNRALPQEVLDQIELEHQHFAAAPQAFFEAWKRGARIAGAEWFG DGTREGLQRATTKWDLRPNLLMLNDALGVLSSGQRMFLSAMVSFYNAREGGAMFKRCG FEGLSDLGGLDLERRKVIADLTLNYNGW" gene 1996999..1997463 /locus_tag="Alide2_1892" /db_xref="GeneID:10482930" CDS 1996999..1997463 /locus_tag="Alide2_1892" /inference="similar to AA sequence:KEGG:Tola_2412" /note="KEGG: tau:Tola_2412 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387786.1" /db_xref="GI:330824483" /db_xref="GeneID:10482930" /translation="MSPGFSIGLLVTDDDIDAVILEGWPAGVPKPRMVVFDYAGNDVL DEYVLRVSTGAPNAGLTGREVFPVEYGPDCRYPSPAEILSVLDARKPAEKPSALSIAR GVHQSILELDARLDRLELVPTGDDYNRLYQLAHGGLIDLLKSLGDPSTPAAG" gene 1997544..1998260 /locus_tag="Alide2_1893" /db_xref="GeneID:10482931" CDS 1997544..1998260 /locus_tag="Alide2_1893" /inference="similar to AA sequence:KEGG:Rpic12D_0658" /note="KEGG: rpf:Rpic12D_0658 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387787.1" /db_xref="GI:330824484" /db_xref="GeneID:10482931" /translation="MSYSNNNPFVRGYDGLSVQRLIAISYDDDCPLTYLPLHPSQSNL PDSQVERRPCIFSDGFVLITEDQAVPDELQAQCRGHGLARNVVYAVMAEDDGKPLHVG DTYSEEAAREVVRRLRYATGYYSRCWEISSAHLDADAHRFLAELADIATPTLFLFVAF RIPYSPAIGLKLIATPWTDENLRAVEGITAKRLMQEHRKKGMPESLVHVLHLAALADV RMLVFDADAQVLDGLPIYDD" gene 1998554..1999351 /locus_tag="Alide2_1894" /db_xref="GeneID:10482932" CDS 1998554..1999351 /locus_tag="Alide2_1894" /inference="similar to AA sequence:KEGG:Rpic12D_0659" /note="KEGG: rpf:Rpic12D_0659 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387788.1" /db_xref="GI:330824485" /db_xref="GeneID:10482932" /translation="MDTQAIRAQMPTLVRGHVPSNVRSFKFNIFDGQPKISTLGFHID PKPFEGKVIATTDEAIVVKTGRAEFAVLDKALVTDVPDEGAKVQVEPYARRRFDGLRA DTPEESTEFTANGQPYTVKRFILGSAPAKLPIAEPQCPELQELIHQLEQLPAPDGFRR ITHLLVDAGARDFTVVDPSPRNIIATPPAIGFTVASAKFYGCVTVLYERGLDTYAVEL HRDGELVERVDEVFFDTLGQVLELLIDDGSWRLIRVQRLSGRKPVQH" gene 1999426..1999791 /locus_tag="Alide2_1895" /db_xref="GeneID:10482933" CDS 1999426..1999791 /locus_tag="Alide2_1895" /inference="similar to AA sequence:KEGG:Ajs_2227" /note="KEGG: ajs:Ajs_2227 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387789.1" /db_xref="GI:330824486" /db_xref="GeneID:10482933" /translation="MTVRFKGTELRPVLAEAAANQCRVILVKDQGVYFMAERGESRPD GRRKTIAYAVGCNPDVDAFDDWWELARTEFGGDDFGEFFDLQERVFTRILHSEDDLEV SATATHLSMQPVSAAPAGH" misc_feature 1999489..1999764 /locus_tag="Alide2_1895" /note="Protein of unknown function (DUF3085); Region: DUF3085; pfam11284" /db_xref="CDD:151725" gene 1999934..2000776 /locus_tag="Alide2_1896" /db_xref="GeneID:10482934" CDS 1999934..2000776 /locus_tag="Alide2_1896" /inference="similar to AA sequence:KEGG:Rpic12D_0661" /note="KEGG: rpf:Rpic12D_0661 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387790.1" /db_xref="GI:330824487" /db_xref="GeneID:10482934" /translation="MRDPFKIEQPTCISFSGGRTSAYMLWRVLQANGGLPADTVVCFA NTGKEVEATLRFVRDCAEHWQVPIHWLEYRPSEPGFVVVDFDTASRAGEPFEALIRKR QYLPNPVARGCTTPLKIRSMHRFLRRQGWTDWDQFIGIRADEQRRVFKIRARGHSTES THETMCMPLAEASVTVRDVSAFWQAQPFDLELLTVNGRTPEGNCDLCFLKPRGQRLAL IKARPEAAVWWIRMESLNLASRPSGARFRNDGPSYADLARFAADQRDLFDAAEESIAC FCGD" misc_feature 1999934..2000731 /locus_tag="Alide2_1896" /note="3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]; Region: CysH; COG0175" /db_xref="CDD:30524" misc_feature 1999961..2000503 /locus_tag="Alide2_1896" /note="This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713" /db_xref="CDD:30168" misc_feature order(2000285..2000287,2000375..2000377,2000414..2000416, 2000426..2000428) /locus_tag="Alide2_1896" /note="Active Sites [active]" /db_xref="CDD:30168" gene 2001095..2001649 /locus_tag="Alide2_1897" /db_xref="GeneID:10482935" CDS 2001095..2001649 /locus_tag="Alide2_1897" /inference="similar to AA sequence:KEGG:Rpic12D_0662" /note="KEGG: rpf:Rpic12D_0662 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387791.1" /db_xref="GI:330824488" /db_xref="GeneID:10482935" /translation="MTTSTDKSYFDLHITGLGYLNRIREVKPKKGDAFLACDIAALNG PSDDVAYVRFDTRVSGSEAQHLVRRCIQAVDAEKKVMIGFRLGDLWADTFTYSKGKRA GEQGVSFKARLLFVSWIKVDGKLVYKAEPKPTDADDRDVRNTDVPATSAEPQAAASEP ARPAAEAADEATADAPALEVAESF" misc_feature 2001095..2001508 /locus_tag="Alide2_1897" /note="Protein of unknown function (DUF3577); Region: DUF3577; pfam12101" /db_xref="CDD:152536" gene 2001770..2002399 /locus_tag="Alide2_1898" /db_xref="GeneID:10482936" CDS 2001770..2002399 /locus_tag="Alide2_1898" /inference="similar to AA sequence:KEGG:Rpic12D_0663" /note="KEGG: rpf:Rpic12D_0663 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387792.1" /db_xref="GI:330824489" /db_xref="GeneID:10482936" /translation="MITIPGQLAIKTIHGRNGDFNVGRLATSIGEFVVKNAELDQYAE GKYEGDFAIAEIRPSTYSANGRMVIEIRALLGGMTLSNIDALSRDDARRLSPQEVDPI DEEAQTATPTPTTAPKAAGRKKARSSRDPLVDTTPFGSEPAAASAEATAHADDDGDAA LFGTLWPLGDVVKLDATVDRRVLRQQRDRLGDLGYEFAPLSQDWHLARV" misc_feature 2001773..2002387 /locus_tag="Alide2_1898" /note="Protein of unknown function (DUF3275); Region: DUF3275; pfam11679" /db_xref="CDD:152115" gene 2002501..2002893 /locus_tag="Alide2_1899" /db_xref="GeneID:10482937" CDS 2002501..2002893 /locus_tag="Alide2_1899" /inference="similar to AA sequence:KEGG:Mpe_A2364" /note="KEGG: mpt:Mpe_A2364 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387793.1" /db_xref="GI:330824490" /db_xref="GeneID:10482937" /translation="MGWTFVRLTRDQLIRELTATEETERSCSEVIDHTLVGNVLWTVV RVTAKQAGVLGLAPGESATLIGCHLLESEGREWGYKFLVEAEHPYYYSCPLRYLDMAP QRCATWRARVHAFHQQPTRKAAGDAATE" gene 2002901..2003170 /locus_tag="Alide2_1900" /db_xref="GeneID:10482938" CDS 2002901..2003170 /locus_tag="Alide2_1900" /inference="similar to AA sequence:KEGG:Tgr7_2834" /note="KEGG: tgr:Tgr7_2834 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387794.1" /db_xref="GI:330824491" /db_xref="GeneID:10482938" /translation="MDTLLSSLPPKLLRFVEDQLANNEVSDDDELREHFIANGLSEEQ AWQALTYRALYLRHVFLDGFTPILKGQEALCFNPHSRGWEPVPNP" gene 2003308..2004135 /locus_tag="Alide2_1901" /db_xref="GeneID:10482939" CDS 2003308..2004135 /locus_tag="Alide2_1901" /inference="protein motif:PFAM:PF06067" /note="PFAM: Protein of unknown function DUF932; KEGG: rpf:Rpic12D_0664 protein of unknown function DUF932" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387795.1" /db_xref="GI:330824492" /db_xref="InterPro:IPR009276" /db_xref="GeneID:10482939" /translation="MQLASRFAPRSPVLRADHPLSDDQIRTVAPSIFADTPHESRSER YSYIPTAAVLTELRREGFQPFMVCQTRVRHEDRRDYTKHMLRLRHASQINGAEANEII LLNSHDGTSSYQMLAGMFRFVCHNGLVCGDTFADVRVPHKGNVTDHVIEGAYEVLHGF ERVQDSRDAMRVITLDDGEAEVFARSALTLKYDESGKALPITETQILRPRRFDDNRAD LWSVFNRVQENLVKGGLTGRAANGRQQRTRPVQGIDQNVRLNRALWLLADGLRQLKA" misc_feature 2003416..2004099 /locus_tag="Alide2_1901" /note="Domain of unknown function (DUF932); Region: DUF932; cl12129" /db_xref="CDD:164334" gene 2004636..2005292 /locus_tag="Alide2_1902" /db_xref="GeneID:10482940" CDS 2004636..2005292 /locus_tag="Alide2_1902" /inference="similar to AA sequence:KEGG:Rpic12D_0665" /note="KEGG: rpf:Rpic12D_0665 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387796.1" /db_xref="GI:330824493" /db_xref="GeneID:10482940" /translation="MPAPSSPKTLYRIDECPDLMADGVVGDENGNLVFISLWARDTAV QEFLARLTLGRDEQGLDQFHVITEQGASIPVFVGNVENLEKRSARAYRRTLFGSLTNI WLFDRRCVKPDKANASALALLPRDSTHRLDRLWTLVRDTCPLPLLDPWRDSVLELLQA KSMLTRLPFALGPLEGHRLAIDVPTLTEVLGGLIRSGALVGGAPASRTPSAQPLEAVA " gene 2005360..2006475 /locus_tag="Alide2_1903" /db_xref="GeneID:10482941" CDS 2005360..2006475 /locus_tag="Alide2_1903" /inference="similar to AA sequence:KEGG:Rpic12D_0666" /note="KEGG: rpf:Rpic12D_0666 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387797.1" /db_xref="GI:330824494" /db_xref="GeneID:10482941" /translation="MALMFPRLARNFVKNGYFPTDEPTLERALTALAPAEASAGPLCI LDPCAGEGVAIAEAAHALGREQVRAFAVEYEAERARHARQLVDRCIHGDLMDTLISRQ SFGLLWLNPPYGDLSKDTNGNVGYQGQGRARLEKLFYQKALPLLQYGGVLIYIVPHYV LDAELVGWLTRHFAELRIYRAVDTQFKQVVIFGRKVRQRDQASDSVKATRALLLQIGL GDAEAEELPVEWPFLPYTVPATAEPEHFYRVTMEPEQFAEEVGRLQGLWPTLDTHLGA AQQSLRSPARGLSHWHLALALAAGAISGVVKSKTGRVLVVKGDTHKEKTLHTEYTERD DGSVAETRILTDKFVPVIRAWDMTPGSPTCGEVLTIR" misc_feature 2005489..2005944 /locus_tag="Alide2_1903" /note="Predicted O-methyltransferase [General function prediction only]; Region: COG4123" /db_xref="CDD:33880" misc_feature 2005489..>2005698 /locus_tag="Alide2_1903" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 2006587..2006892 /locus_tag="Alide2_1904" /db_xref="GeneID:10482942" CDS 2006587..2006892 /locus_tag="Alide2_1904" /inference="similar to AA sequence:KEGG:Tmz1t_0973" /note="KEGG: tmz:Tmz1t_0973 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387798.1" /db_xref="GI:330824495" /db_xref="GeneID:10482942" /translation="MALAVLNVASQARFAPGHLVMTCGIDALVRQGRLNPTPYLCRHL NGDWGDLDDSDRRQNDAALRSGEDRLFSSYQVAPDLKLWIITEWDRSVTTLLLPSEY" gene 2006995..2009277 /locus_tag="Alide2_1905" /db_xref="GeneID:10482943" CDS 2006995..2009277 /locus_tag="Alide2_1905" /inference="protein motif:SMART:SM00487" /note="SMART: DEAD-like helicase, N-terminal; KEGG: rpf:Rpic12D_0667 DEAD-like helicase" /codon_start=1 /transl_table=11 /product="DEAD-like helicase" /protein_id="YP_004387799.1" /db_xref="GI:330824496" /db_xref="InterPro:IPR014001" /db_xref="GeneID:10482943" /translation="MSLDTDVVPAAHGTPIQGDLLEAAASPLAMSLQDFVAEFGDELL DSLNRANPPVYTGQARPHRQLVLASLKRKLFGAQAEVVHAVTELLADRGERAAIVNGE MGCGKTTVGIATAAVLHAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTL VKLIKLREQLGVPVRGQEFYVLGRVRMRMGFHWKPVFNVRHTKHGEVGACPDCGQVIT NLDGEPINPVELEAEDYRRRCSHCAAPLWTLMRPRSLSASDQSTAVFKALQRIPTIGE VTAQKLMKKFGDGFLASMLGDNIHEFINLMDAKGELVFSDRQAHRMERAMANMEFSFG EGGYQPSEFVKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVLAAKARKTLLLTGTL MGGYGDDLFHLLFRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGILKDIYSESTGTA HKTAKGTKVSVRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPSYDEEFREVAMD TAQAAAYRDLSFRLTSALKQALAKRDTTLLGVVLNVLLAWPDCCFRSETVVHPRTRQT LAFVPAQFNELEVMPKERELIEICKQEKAAGRKTLVYSVYTGTRDTTSRLKVLLEQEG FKVAVLRASVDASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNV YSLQQAARRSWRIGQKLPVRVIYLGYTASSQMTCLGLMARKIMVSQSTSGDVPESGLD VLNQDGDSVEVALARQLVAA" misc_feature 2007211..>2007426 /locus_tag="Alide2_1905" /note="DEAD-like helicases superfamily; Region: DEXDc; smart00487" /db_xref="CDD:128763" misc_feature 2008738..2009088 /locus_tag="Alide2_1905" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(2008816..2008827,2008885..2008890,2008963..2008965, 2008969..2008974) /locus_tag="Alide2_1905" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(2008990..2008992,2009053..2009055,2009065..2009067, 2009074..2009076) /locus_tag="Alide2_1905" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene 2009437..2010048 /locus_tag="Alide2_1906" /db_xref="GeneID:10482944" CDS 2009437..2010048 /locus_tag="Alide2_1906" /inference="protein motif:TFAM:TIGR03748" /note="TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: rpf:Rpic12D_0668 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein PilL" /protein_id="YP_004387800.1" /db_xref="GI:330824497" /db_xref="InterPro:IPR022260" /db_xref="GeneID:10482944" /translation="MQPLTCVAHRLAVPAVLAGCVLITGCAATGTTSPPTVHDSLPEP AVLVRTIAPEPEPGLIPVARYGRYTLVEMVPEPAQRDLLRQVIEISIPPILDASVGDA LRHVLLRTGYRLCDATEATALHALPLPAAHLRLGPLPLRDALLALAGPAWELSVDDAS RAVCFTRVTTARAPSASPIPAAPASSAPAAEPADSHVPQEAQP" misc_feature 2009626..2009931 /locus_tag="Alide2_1906" /note="conjugative transfer region protein, TIGR03748 family; Region: conj_PilL" /db_xref="CDD:163460" gene 2010045..2010689 /locus_tag="Alide2_1907" /db_xref="GeneID:10482945" CDS 2010045..2010689 /locus_tag="Alide2_1907" /inference="similar to AA sequence:KEGG:Rpic12D_0669" /note="KEGG: rpf:Rpic12D_0669 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387801.1" /db_xref="GI:330824498" /db_xref="GeneID:10482945" /translation="MTIPQLPDENAGRARWLKITAAAWLLLVSILAVVNSVGLSRLSE QSQASAQDAHVQALNTRVAELEQQAAASKNQPKPVTQPDLEAARKLLDERLAQVEHTQ GADAHAGDLQALQARMGDLEARMKRTAAPAAAPRRTAEPAKPKVPEPPFNVVGVELRG GERFLSVSAPQASSVLDVWLLREGDAVGAWHLLAIEARAAVFRVDGQTQRIALP" gene 2010699..2011430 /locus_tag="Alide2_1908" /db_xref="GeneID:10482946" CDS 2010699..2011430 /locus_tag="Alide2_1908" /inference="protein motif:TFAM:TIGR03759" /note="TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: rpf:Rpic12D_0670 putative secreted protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387802.1" /db_xref="GI:330824499" /db_xref="InterPro:IPR022293" /db_xref="GeneID:10482946" /translation="MKHAAIYLAAILAAVVGTAGTASAQSAPVASSRTVPAQVHNSTD AALDERLARDWGLRPEEWARYRQLMQGPLGIYSPNLDPLTALGIEARSDEERSRYAEL QVQAESKRVGKTLAYQRAYDAAWKRLYPGQQRVNMPGAKAPGAGNRGSGRLAVFVKAE CPPCEQRVRQLQAAGTAFDLYMVGSRQEDARIRQWATQAGIDAGRVRSRTITLNHDAG RWLSLGLPGDLPAVVREVNGQWQRQ" sig_peptide 2010699..2010773 /locus_tag="Alide2_1908" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.881 at residue 25" misc_feature 2010828..2011421 /locus_tag="Alide2_1908" /note="integrating conjugative element protein, PFL_4693 family; Region: conj_TIGR03759" /db_xref="CDD:163471" gene 2011415..2012014 /locus_tag="Alide2_1909" /db_xref="GeneID:10482947" CDS 2011415..2012014 /locus_tag="Alide2_1909" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase-like, catalytic; KEGG: rpf:Rpic12D_0671 lytic transglycosylase catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic subunit" /protein_id="YP_004387803.1" /db_xref="GI:330824500" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10482947" /translation="MAAAITATSLARRADRAALVLVLCACTAIAFGQEVPPPAYQLAA QQAGVPSPVLYAVALQESGARLRGRLIPWPWTLNVAGRAERYATRAEACAGIRRALAR TPANRIDAGLGQVNLGYHAHRYAHPCELLDPYRNLAIAAEILQEQHTPGDNWLVAIGR YHRPAGGAPAARYRRSVHQHLTRVLGPGAALPTARSPMP" sig_peptide 2011415..2011513 /locus_tag="Alide2_1909" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.971 at residue 33" gene 2012011..2012577 /locus_tag="Alide2_1910" /db_xref="GeneID:10482948" CDS 2012011..2012577 /locus_tag="Alide2_1910" /inference="protein motif:TFAM:TIGR03765" /note="TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: rpf:Rpic12D_0672 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387804.1" /db_xref="GI:330824501" /db_xref="InterPro:IPR021300" /db_xref="GeneID:10482948" /translation="MNRILLAAMAALLAATAHAQGRSPYTKPASPPLIVVEDKGGTSA LPYYRALNPQDAQPGQPVTPQPAPQSKPRIGSPAEAEAAMLPVRSVRLTPGDEPRRVI RTPGLTPLFLIGDDDRSRAWLKQRGKDLQALHAVGLVVNVATPEALATLRRLAPGLML SPASGDELAQRLGLKHYPVLITATGIEP" sig_peptide 2012011..2012070 /locus_tag="Alide2_1910" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 at residue 20" misc_feature 2012116..2012571 /locus_tag="Alide2_1910" /note="Protein of unknown function (DUF2859); Region: DUF2859; cl12633" /db_xref="CDD:164343" gene 2012598..2014757 /locus_tag="Alide2_1911" /db_xref="GeneID:10482949" CDS 2012598..2014757 /locus_tag="Alide2_1911" /inference="protein motif:TFAM:TIGR03743" /note="TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1; KEGG: rpf:Rpic12D_0673 hypothetical protein" /codon_start=1 /transl_table=11 /product="conjugative coupling factor TraD" /protein_id="YP_004387805.1" /db_xref="GI:330824502" /db_xref="InterPro:IPR022458" /db_xref="InterPro:IPR022503" /db_xref="GeneID:10482949" /translation="MAQSQAVEVLLRPAVELYTVAVCAGAAFLCLVAPWSLALSPLLG LGSALAFLTFGALRLHDAWAILRYRRNIRRLPRYVMTSRDVPVSQQRLFVGRGFRWDQ RHTHRLMQTYRPEFRRYVEPTAIYRAARRMEERLEFAPYPLSKMAKALAWDSPLNPAR PLPPVGGLPRLHGIEPHEVDVTLPLAERVGHSLVLGTTRVGKTRLAELFITQDIRRKV NGQHEVVIVFDPKGDADLLKRMYVEAKRAGREGEFYVFHLGWPDISARYNAVGRFGRI SEVATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPDYLLIQRHVINIDALF IEYAQHYFAKNEPKAWEVIVQLEAKLNDKNIPRNMIGREKRVVALEQYLSQVRIYDPV LDGLRSAVRYDRTYFDKIVASLLPLLEKLTTGKIAQLLAPNYSDLADPRPIFDWMQII RKRAVVYVGLDALSDAEVAAAVGNSMFSDLVSVAGHIYKFGIDDGLPDAATGIKVPIN VHADEFNELMGDEFIPMVNKGGGAAVQVTAYTQTLSDIEARIGNRAKAGQVVGNFNNL FMLRVRETATAELLTRQLPKVEVYTTTVMSGATDSSDPTGNTAFTSNTQDRISSNSVP LIEPAHVVGLPKGQCFALIEGGHLWKVRMPLPALDPDEAMPKDLQELAGYMRQHYVEA GEWWDNKGLPGLQDQALPDDLLADFKQMAGADEEATA" misc_feature 2012616..2014565 /locus_tag="Alide2_1911" /note="conjugative coupling factor TraD, SXT/TOL subfamily; Region: SXT_TraD; TIGR03743" /db_xref="CDD:163455" misc_feature 2012616..2014565 /locus_tag="Alide2_1911" /note="TraM recognition site of TraD and TraG; Region: TraG-D_C; cl14888" /db_xref="CDD:196849" gene 2014754..2015503 /locus_tag="Alide2_1912" /db_xref="GeneID:10482950" CDS 2014754..2015503 /locus_tag="Alide2_1912" /inference="protein motif:TFAM:TIGR03747" /note="TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: rpf:Rpic12D_0674 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element membrane protein" /protein_id="YP_004387806.1" /db_xref="GI:330824503" /db_xref="InterPro:IPR022266" /db_xref="GeneID:10482950" /translation="MSDPAVAVQRQQVRQQGLIAGLVTLPFRLFGVLIGSLLLCIVIE CIGMHFLWPEQGWRHAQGMLNYELSQVSEHFTQSVLVQEPGRSARQLVEWAYQGLFVK TGLLDWIRDAAAQSRAGARSQAQDFRYYIGQLYVHVESYLIASAYTVLVFLVRLLVLV LTLPLFLMAAFTGLVDGLVRRDVRGFGAGRESGFVYHRARASLMPLAVLPWVTYLALP VSVHPLLILLPSAALLGVAVCIASATFKKYL" misc_feature 2014802..2015500 /locus_tag="Alide2_1912" /note="integrating conjugative element membrane protein, PFL_4697 family; Region: conj_TIGR03747" /db_xref="CDD:163459" gene 2015617..2016024 /locus_tag="Alide2_1913" /db_xref="GeneID:10482951" CDS 2015617..2016024 /locus_tag="Alide2_1913" /inference="protein motif:TFAM:TIGR01690" /note="KEGG: rpf:Rpic12D_0675 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387807.1" /db_xref="GI:330824504" /db_xref="InterPro:IPR019110" /db_xref="GeneID:10482951" /translation="METTRNPAQVRCYAAAALRAVRLAALLLAAAGLQPAIAADGSDN AAEREMLAAVTRQLELLDRLAEHAATTAPQERARYHFDYVRLRADLERVRAGVRDYLV PQRAQPRDPVPPAGDYTRSNATTATPGKEATSP" sig_peptide 2015617..2015733 /locus_tag="Alide2_1913" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.962) with cleavage site probability 0.951 at residue 39" misc_feature 2015740..2015970 /locus_tag="Alide2_1913" /note="Plasmid protein of unknown function (Plasmid_RAQPRD); Region: Plasmid_RAQPRD; cl09893" /db_xref="CDD:164164" gene 2016021..2016260 /locus_tag="Alide2_1914" /db_xref="GeneID:10482952" CDS 2016021..2016260 /locus_tag="Alide2_1914" /inference="protein motif:TFAM:TIGR03758" /note="TIGRFAM: Protein of unknown function DUF3262; KEGG: rpf:Rpic12D_0676 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387808.1" /db_xref="GI:330824505" /db_xref="InterPro:IPR021676" /db_xref="GeneID:10482952" /translation="MTPSADQVAAFSANGGFSPGAVSTVVLGFVFAVLLLWGVWAMRT AYVGWAEHHLTQRQFLGVIARFVAMYLVLGFFLLS" misc_feature 2016027..2016254 /locus_tag="Alide2_1914" /note="Protein of unknown function (DUF3262); Region: DUF3262; cl13160" /db_xref="CDD:164348" gene 2016282..2016659 /locus_tag="Alide2_1915" /db_xref="GeneID:10482953" CDS 2016282..2016659 /locus_tag="Alide2_1915" /inference="protein motif:TFAM:TIGR03745" /note="TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: rpf:Rpic12D_0677 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element membrane protein" /protein_id="YP_004387809.1" /db_xref="GI:330824506" /db_xref="InterPro:IPR021356" /db_xref="GeneID:10482953" /translation="MNAPATSRRPTSRPAARLAALLIPLGIAATPLPSFADLPTLEDP SRGTGSGIMQTLQNYGYDIVLLIALLVVASMFVGVCYHAYTRYAEIHTGRATWGQFGL TVAVGAILLVVGIWLLTKATGVL" sig_peptide 2016282..2016392 /locus_tag="Alide2_1915" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 37" misc_feature 2016381..2016656 /locus_tag="Alide2_1915" /note="Protein of unknown function (DUF2976); Region: DUF2976; cl12739" /db_xref="CDD:164344" gene 2016672..2017100 /locus_tag="Alide2_1916" /db_xref="GeneID:10482954" CDS 2016672..2017100 /locus_tag="Alide2_1916" /inference="protein motif:TFAM:TIGR03750" /note="TIGRFAM: Protein of unknown function DUF3487; KEGG: rpf:Rpic12D_0678 hypothetical protein" /codon_start=1 /transl_table=11 /product="conjugative transfer region protein" /protein_id="YP_004387810.1" /db_xref="GI:330824507" /db_xref="InterPro:IPR021877" /db_xref="GeneID:10482954" /translation="MAGALESPSRDGLVTFLPHRLNRHPVVVRGLTADELWVCAGLSG AAGLVAGVPLAWLTHSIAMVPTLIVAGIGVGVFVGGGLLRRWKRGRPDTWLYRQLQWR LALRYPALAAHAGRGQLITRSGWWSTRRLRPDPSLRRGRP" misc_feature 2016702..2017070 /locus_tag="Alide2_1916" /note="Protein of unknown function (DUF3487); Region: DUF3487; cl13432" /db_xref="CDD:164351" gene 2017097..2017789 /locus_tag="Alide2_1917" /db_xref="GeneID:10482955" CDS 2017097..2017789 /locus_tag="Alide2_1917" /inference="protein motif:TFAM:TIGR03746" /note="TIGRFAM: Protein of unknown function DUF2895; KEGG: rpf:Rpic12D_0679 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387811.1" /db_xref="GI:330824508" /db_xref="InterPro:IPR021548" /db_xref="GeneID:10482955" /translation="MSRFKNEVAHLQAHVKTLRLAGAALFVVALLLGFGWWSAPKSLT IHVPPDLRSGSTRKWWDVPPESVYAFTFYIWQQAQRWPTNGEQDYPRNLHALSAYFTP SCRAFLQQDFEFRRSNGELRQRVRGIYEIPGRGYGDDPAMRVRTVSANNWIVTLDVSA DEYLGAEQVKRALVRYALKVVRMDVDPERNPFGLALDCHARAPERIETPPPAAPPGRA ASAGSNLQGDTP" misc_feature 2017106..2017690 /locus_tag="Alide2_1917" /note="Protein of unknown function (DUF2895); Region: DUF2895; cl12968" /db_xref="CDD:196490" gene 2017786..2018715 /locus_tag="Alide2_1918" /db_xref="GeneID:10482956" CDS 2017786..2018715 /locus_tag="Alide2_1918" /inference="protein motif:TFAM:TIGR03749" /note="TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: rpf:Rpic12D_0680 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387812.1" /db_xref="GI:330824509" /db_xref="InterPro:IPR021844" /db_xref="GeneID:10482956" /translation="MKPFVMRPFAAALAGLLLCLAFVPAVHAVEILRWERLPLAVPLV VGQERVVFIERNVRIGVPAGIGEQLRVQSAGGAIYLRANAPIPPTRLQLQDVESGALI LLDIAAEPAKAGQPALEPVRIVEGDVPSTRYGELVKPTVTADDDAERTVTTVKRATPV AVVLTRYAAQNLYAPLRTVEPVPGIGRVNLRRGLELSTLLPTLPVRAQALAAWRLEDQ WVTAVKLTNVSARLLDLDPRALQGDLLAATFQHPNLAPAGRAADTTVVYLVTRGHGLA ESLLPKLSPIDATVNLPPAAAAGQAEGGTRHEK" sig_peptide 2017786..2017872 /locus_tag="Alide2_1918" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 29" misc_feature 2017849..2018646 /locus_tag="Alide2_1918" /note="Protein of unknown function (DUF3438); Region: DUF3438; cl13372" /db_xref="CDD:196586" gene 2018705..2020174 /locus_tag="Alide2_1919" /db_xref="GeneID:10482957" CDS 2018705..2020174 /locus_tag="Alide2_1919" /inference="protein motif:TFAM:TIGR03752" /note="TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: rpf:Rpic12D_0681 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387813.1" /db_xref="GI:330824510" /db_xref="InterPro:IPR021207" /db_xref="GeneID:10482957" /translation="MKSNPLLKWLLIPMALVLLFVGLKMFSGDRGARPAPAGTAKPLT PEEMKALGIEGDTPRDTVATLVAQVKQLRNELQTALNDNKNQKTENERMRARESAIDQ RIQSALDGERGRLQQDREQLAGDRQQTQGLLQDLQRRLDGLSGKGGQAELPVGLGLEE GDGKGFGGTQGGAARSTSGTRWVEPDDAKPSAKNGSSGGLNFPTSFGPAQKTLSDTAD SVASTVANAGNRAVGASSKPVYTVPSNSTLMGSIAMTALIGRVPIDGTVNDPYPFKVL IGPDNLTANGIDIPDVAGAVVSGTASGDWALSCVRGQIRSVTFVFNDGTVRTMPEDGN RNQSGGGQGNGANSTTQGGLGWISDPYGIPCVSGERRSNAQQYLGSQALITAAGAGAA SLIKSDNGSVAVVANSNGSLGTVGISGNEAMGRILAGGVRDMADWVNKLYGQAFAAVY VRPGAKVAVHLEQPLNIDYDAKGRRVNHRIGGKHASDLD" misc_feature 2018708..2020141 /locus_tag="Alide2_1919" /note="integrating conjugative element protein, PFL_4705 family; Region: conj_TIGR03752" /db_xref="CDD:188383" misc_feature 2018783..>2019040 /locus_tag="Alide2_1919" /note="TATA element modulatory factor 1 TATA binding; Region: TMF_TATA_bd; pfam12325" /db_xref="CDD:192987" gene 2020155..2020589 /locus_tag="Alide2_1920" /db_xref="GeneID:10482958" CDS 2020155..2020589 /locus_tag="Alide2_1920" /inference="protein motif:TFAM:TIGR03751" /note="TIGRFAM: Conjugative transfer region lipoprotein; KEGG: rpf:Rpic12D_0682 hypothetical protein" /codon_start=1 /transl_table=11 /product="conjugative transfer region lipoprotein" /protein_id="YP_004387814.1" /db_xref="GI:330824511" /db_xref="InterPro:IPR022262" /db_xref="GeneID:10482958" /translation="MRRIWIESAAILCAVLVLGGCATSKDKLLPHGDRTMLDVWNQET GGSAGGGQAARQLLDARQDLRRPLTEADVQAAPAAAAAYTRTAANEIYRQFRRLPNPD LVMYVFPHLAGTDPVPVPGYTTVFPLYQRVQYAMPGERLEDY" sig_peptide 2020155..2020229 /locus_tag="Alide2_1920" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.967) with cleavage site probability 0.919 at residue 25" misc_feature 2020209..2020574 /locus_tag="Alide2_1920" /note="conjugative transfer region lipoprotein, TIGR03751 family; Region: conj_TIGR03751" /db_xref="CDD:163463" gene 2020589..2023471 /locus_tag="Alide2_1921" /db_xref="GeneID:10482959" CDS 2020589..2023471 /locus_tag="Alide2_1921" /inference="protein motif:TFAM:TIGR03744" /note="TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: rpf:Rpic12D_0683 hypothetical protein" /codon_start=1 /transl_table=11 /product="conjugative transfer ATPase" /protein_id="YP_004387815.1" /db_xref="GI:330824512" /db_xref="InterPro:IPR022303" /db_xref="GeneID:10482959" /translation="MAWSLPWARKAVTPAGPDLDADDAWAQHVSTLVAHGIPEPGSAV GSQPRPPATEADLQALYGVAPSFADLLPWVEYLPGSKSMLLEDGQSVAGFFELAPVGT EGREMAWLWQARDALENALQDSFDELDENPWVVQLYAQDESTWDTYLRGLADYVRPRA QGSAFTDFYLRFFGHHLRAIAKPGGLFEDTTVTRLPWRGQVRRVRMVVYRRANAATAS RRGQSPEQALTTICDRLVGGLANAGVKSRRMEAADIHDWLLRWFNPHPTLLGPSADDR ERFYALTRYPEAVEDGEIELASGDFAQRLFFGQPRSDVANGTWLLDGMPHRVIVMDRL RMPPATGHVTGETRKGGDAVNALFDQMPEDTVMCLTVVATPQDVLEGHLNHLSKKSVG ETLASEQTRRDVQEARGLIGSAHKLYRGALAFYLRGRDLPQLDARGLQLINVMLNAGL QPVREEDEVAPLNSYLRWLPCVFDPATDKRQWYTQLMFAQHAANLAPVWGRSQGTGHP GITFFNRGGGPITFDPLNRLDRQMNAHLFLFGPTGSGKSATLNNILNQVTAIYRPRLF IVEAGNSFGLFGDFAARLGMKVHRVKLAPGAGVSLAPFADAHRLVETPSQVQTLDADA LDEDRDEAVQAADADEQRDVLGELEITARLMITGGEDKEEARMTRADRSLIRQCILDA AQHCVAEQRTVLTRDVRDALRERARDTSLPEVRRARLLEMADAMDMFCQGVDGEMFDR PGTPWPEADITIVDLATFAREGYNAQLSIAYISLINTVNNIAERDQFLGRPIINVTDE GHIITKNPLLAPYVVKITKMWRKLGAWYWLATQNIDDLPKAAEPMLSMIEWWICLSMP PDEVEKIARFRELNPAQKALMLSARKEAGKFTEGVILSKSMEVLFRAVPPSLYLALAQ TEPEEKAERFQLMQQYGIGELDAAFRIAEKIDLARGIESLALDALA" misc_feature 2020745..2023438 /locus_tag="Alide2_1921" /note="conjugative transfer ATPase, PFL_4706 family; Region: traC_PFL_4706; TIGR03744" /db_xref="CDD:163456" gene 2023482..2024237 /locus_tag="Alide2_1922" /db_xref="GeneID:10482960" CDS 2023482..2024237 /locus_tag="Alide2_1922" /inference="protein motif:PFAM:PF01323" /note="PFAM: DSBA-like thioredoxin domain; KEGG: rpf:Rpic12D_0684 DsbA oxidoreductase" /codon_start=1 /transl_table=11 /product="DSBA oxidoreductase" /protein_id="YP_004387816.1" /db_xref="GI:330824513" /db_xref="GO:0015035" /db_xref="InterPro:IPR001853" /db_xref="GeneID:10482960" /translation="MQVARFIPFRSVALVAVLLVVALIAAAWLGLQPQTPTAEPASLS AEATAAPAPAPAATAGPPWRYGRDDARFTVEEYADLECPFCRAYFAVLKQWINSHPEV NWQWHHLPLTTHEPAATANARLVECVGEAGGPTAFWQAVEWVYAHTRGDGQGLPEGLG YPGITTAAQQCLDSDRPDTLIRAQSASAAQEGIKVTPTLRLQDRQSGKTLLLHGPVDG DALLSAIDLLAAGGTNETASKEMPAESLGDMPK" sig_peptide 2023482..2023565 /locus_tag="Alide2_1922" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.453 at residue 28" misc_feature 2023701..2023970 /locus_tag="Alide2_1922" /note="DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a...; Region: DsbA_family; cd02972" /db_xref="CDD:73335" misc_feature order(2023725..2023727,2023734..2023736) /locus_tag="Alide2_1922" /note="catalytic residues [active]" /db_xref="CDD:73335" gene 2024431..2025018 /locus_tag="Alide2_1923" /db_xref="GeneID:10482961" CDS 2024431..2025018 /locus_tag="Alide2_1923" /inference="similar to AA sequence:KEGG:Neut_0078" /note="KEGG: net:Neut_0078 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387817.1" /db_xref="GI:330824514" /db_xref="GeneID:10482961" /translation="MQPKTHVVDGVTFVATPYRAGTFIREDVFWCQFTITCQGYIEYP EDDPVFGTWWTPHILELGQHGLIEDALALAADELSKDEFDLRSEIEALDFRPELVLIR DSLDRLVVSGEVQCGGRIRWCEPTASDAEAADVAKQVDDLRGEASYEAGWDNHSTAER LRLRARVLAGRVVDPFWQAHARRAVQASAARAAVA" gene 2025193..2025801 /locus_tag="Alide2_1924" /db_xref="GeneID:10482962" CDS 2025193..2025801 /locus_tag="Alide2_1924" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: maq:Maqu_1250 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein TetR" /protein_id="YP_004387818.1" /db_xref="GI:330824515" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10482962" /translation="MDTHPKHLPADERRAVTVESVVALAGSQNPSEITTAAIAKHMNL TQGALFRHFPNKEAIWQAVMEWVAERLLARIDRSAQGIESPLAAMEAMFMSHIEFVAE HPGVPRMMFGELQRAESTPAKRMVQTLIQRYGERLHRLIEKGKASGELSPSLDNEAAA TLFIGTIQGLVMQSLLAGDVGRMHRDAPRVFAIYRRGIRSAQ" misc_feature 2025226..2025711 /locus_tag="Alide2_1924" /note="division inhibitor protein; Provisional; Region: slmA; PRK09480" /db_xref="CDD:181894" misc_feature <2025292..2025381 /locus_tag="Alide2_1924" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 2025798..2026949 /locus_tag="Alide2_1925" /db_xref="GeneID:10482963" CDS 2025798..2026949 /locus_tag="Alide2_1925" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: ppd:Ppro_3851 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_004387819.1" /db_xref="GI:330824516" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10482963" /translation="MKKLPLQGRTLALLAVIIPLLVLFIYVGLRSGPLAPVAVTVASV ESRAITPALFGIGTVEARYTYKIGPTFAGRVKRLEVHVGDQVKAGQVLGEMDPVDLDD RVRSQESAFKRAEAALREAEARQAYAQTQARRYEQLFAVRSTSEEIVTTKRQELQIAD AALSAAREDIARARSDREGLVAQRSNLRLIAPVDGVVAVRDADPGTTIVAGQAVVEVI DPKSFWINVRFDQISASGLAGGLPARIVLRSRGGQTLNGRVLRVEPKADAVTEETLAK VTFDNKPEPLPPVGELGEVTVDLPALPAAPLIPNSAVQREGDKVGVWQIVDGDLRFSP VKLGTSDLNGYVQVREGLKNGDQVVTYSEKALTARSRIHVVDHIPGVSR" misc_feature 2025912..2026877 /locus_tag="Alide2_1925" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 2026946..2028151 /locus_tag="Alide2_1926" /db_xref="GeneID:10482964" CDS 2026946..2028151 /locus_tag="Alide2_1926" /inference="protein motif:PFAM:PF02687" /note="PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: ppd:Ppro_3850 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387820.1" /db_xref="GI:330824517" /db_xref="InterPro:IPR003838" /db_xref="GeneID:10482964" /translation="MISLAGRDILHAWGKFVFTGIGLGLLIGVTLVMAGVYRGMVDDG KALLDNSGADLWVVQKDTLGPYAESSSLNDDVYRAILAMPGVAQAANVTYLTMQVRKG ESDVRTMVVGIAPGALGATPGWPPYLVAGRQITRGHYEAVADIATGFKLGDRLAIRRN HYTVVGLTRRMVSSSGDPMVFIPLKDAQEAQFLKDNDAIWQSRRRTEANPAFNRPGVP GLLDAVIASQSTNAFVNAVLVTLKPGHTPDEVAESIRRWKRLTVYTRAQMEDILVGKL IATSAKQIGMFLVILAIVSAAIVAFIIYSLTMDKIREIAVLKLIGTRNRTIAAMIMQQ ALALGVIGFVVGKITATFSAPLFPKYVLLMPFDSIAGFFAVLVICVLASIVAIRMALK VDPAEAIGG" misc_feature 2027135..>2027509 /locus_tag="Alide2_1926" /note="MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704" /db_xref="CDD:193180" misc_feature 2027867..2028130 /locus_tag="Alide2_1926" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 2028153..2028863 /locus_tag="Alide2_1927" /db_xref="GeneID:10482965" CDS 2028153..2028863 /locus_tag="Alide2_1927" /EC_number="3.6.3.28" /inference="protein motif:PRIAM:3.6.3.28" /note="PFAM: ABC transporter-like; KEGG: ppd:Ppro_3849 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="phosphonate-transporting ATPase" /protein_id="YP_004387821.1" /db_xref="GI:330824518" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482965" /translation="MSGKGIRIEGLRKRYGEGDTAVDALKGVDMQVAPGEVVGLIGPS GSGKSTLLKCLGAVIDPTAGRMTLGDEVIYDDGWKVRDLRALRRDKIGFVFQAPYLIP FLDVTDNVALLPMLAGVANGESRAKALELLTALDVQHRARAMPSQLSGGEQQRVAIAR GLVNRPPVILADEPTAPLDSERAMAVIRILNDMARKFETAIIVVTHDEKIIPTFKRIY HIRDGVTHEEAGEGREFE" misc_feature 2028168..2028836 /locus_tag="Alide2_1927" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature 2028168..2028821 /locus_tag="Alide2_1927" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature 2028276..2028299 /locus_tag="Alide2_1927" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature order(2028285..2028290,2028294..2028302,2028438..2028440, 2028666..2028671,2028768..2028770) /locus_tag="Alide2_1927" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature 2028429..2028440 /locus_tag="Alide2_1927" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature 2028594..2028623 /locus_tag="Alide2_1927" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature 2028654..2028671 /locus_tag="Alide2_1927" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature 2028678..2028689 /locus_tag="Alide2_1927" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature 2028756..2028776 /locus_tag="Alide2_1927" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene 2028892..2029365 /locus_tag="Alide2_1928" /db_xref="GeneID:10482966" CDS 2028892..2029365 /locus_tag="Alide2_1928" /inference="similar to AA sequence:KEGG:Ppro_3848" /note="KEGG: ppd:Ppro_3848 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387822.1" /db_xref="GI:330824519" /db_xref="GeneID:10482966" /translation="MTHRKHSHAFGTITLTVTACLLLWGFQLPAWAGDATQIEPLALR KIMQELGRNMQAITGAISQEEWVQVVQLAPKVAAHPEPPLTKKMRILAYLGADATKFR NFDAQTHEAALAMKLAAASSDGKAVIQSFAHVQESCLGCHQAFRKPFVEHFYGAR" sig_peptide 2028892..2028990 /locus_tag="Alide2_1928" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 33" gene 2029352..2030839 /locus_tag="Alide2_1929" /db_xref="GeneID:10482967" CDS 2029352..2030839 /locus_tag="Alide2_1929" /inference="protein motif:TFAM:TIGR01845" /note="KEGG: maq:Maqu_1255 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein" /codon_start=1 /transl_table=11 /product="NodT family RND efflux system outer membrane lipoprotein" /protein_id="YP_004387823.1" /db_xref="GI:330824520" /db_xref="GO:0005215" /db_xref="GO:0008289" /db_xref="InterPro:IPR003423" /db_xref="InterPro:IPR010131" /db_xref="GeneID:10482967" /translation="MEHAKTCQRPISLERRLAATYLVAGLVTAGLAGCAAGPDFKRPT APDVARYTAIPVADRTASAPTQFGETQRLVEGLPIETQWWQSLGSSALDGLINEAFHV SPTLASISANLRHAQELLAAQAGSTQYPQVDVALGSQRQQMSPSSQGLSGDARQFSLY NASVGVHYNLDLAGGNRRALEALAARADYRRFELNAARLALAGNMATAAITRARLAAQ LEATTAILRVQDEQLRLAHERVRIGQASPDEALSLQAQAEQTRAELPALRKQLQQTEH LLAVLAGRAPGTGGIPAFTLADFTLPVEMPLVVPSELVRRRPDIQASEALLHAANADY GVAVAKLYPQINLSANLGSQALTTGALFGGGSAVWGLVAQLTQPLFNPGLPAEKRAAL AAFDAAVANYQSVVLESLRNVADTLRAVESDAQTLTALAAADKAAQASLQSVERQYRL GAASYLQLLIAQQQAQSIRINMVAVQAQRLVDSVALYQALGGGVS" misc_feature 2029442..2030830 /locus_tag="Alide2_1929" /note="NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:162557" misc_feature 2030282..2030824 /locus_tag="Alide2_1929" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene 2030999..2032681 /locus_tag="Alide2_1930" /db_xref="GeneID:10482968" CDS 2030999..2032681 /locus_tag="Alide2_1930" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bxe:Bxe_C1173 integrase TniA" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004387824.1" /db_xref="GI:330824521" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="InterPro:IPR015378" /db_xref="GeneID:10482968" /translation="MATDTAPITEHGVATLPEQAWERARRRAEIIGPLAQSETVGHEA ADAAAQALGLSRRQVYVLIRRARLGSGLVTDLALGQSSGGKGKGRLPESVERIIRELL QKRFLTKQKRSLAAFHREVARVCKLQKLRMPARNTVALRIASLDPLKTTRLREGQDAS RILQGVGGVPPPVSAPLEQVQIDHTVIDLIVVDERDRQPIGRPYLTLAIDVFTRCVVG MVVTLEAPSAVSVGLCLAHAGCDKRPWLERLDVEMDWPMSGKPALLYLDNAAEFKSEA LRRGCEQHGIRLDYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGEYASE KMAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAITRTGVPTVITRATAFLV DFLPIIRRTLTRTGFVIDHIHYYADALKPWIARRDRLPAFLIRRDPRDISRIWVLEPE GQHYLEIPYRTLSHPAVTLWEQRQALAKLRQQGREQVDESALFRMIGQMREIVTTAQK ATRKARRDADRRQHLKSTEQPVKTTPPADTDMADPQADNQPPAKPFDQIEEW" misc_feature 2031518..2031937 /locus_tag="Alide2_1930" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" misc_feature 2032166..2032360 /locus_tag="Alide2_1930" /note="Mu transposase, C-terminal; Region: Mu-transpos_C; pfam09299" /db_xref="CDD:117843" gene 2032684..2033592 /locus_tag="Alide2_1931" /db_xref="GeneID:10482969" CDS 2032684..2033592 /locus_tag="Alide2_1931" /inference="protein motif:PFAM:PF05621" /note="KEGG: bxe:Bxe_C1174 transposition protein TniB; PFAM: Bacterial TniB; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="TniB family protein" /protein_id="YP_004387825.1" /db_xref="GI:330824522" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR008868" /db_xref="GeneID:10482969" /translation="MDEYPIIDLSHLLPAAQGLARLPADERIHRLRADRWIGYPRAVE ALNRLEALYTWPNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPASSDADQEHIPVLVVQ MPSEPSVIRFYVALLAAMGAPLRPRPRLPEIEQLALTLLRKLGVRLLVIDELHNVLAG NSVNRREFLNLLRFLGNELRIPLVGVGTRDAYLAIRSDDQLENRFEPMMLPVWEANHD CCSLLASFAASLPLRRPSSIATLDMARYLLTRSEGAIGELAHLLMAAAIVAVESGEEA INHRTLSMADYTGPSERRRQFERELM" misc_feature 2032684..2033589 /locus_tag="Alide2_1931" /note="Bacterial TniB protein; Region: TniB; pfam05621" /db_xref="CDD:114349" gene 2033589..2034806 /locus_tag="Alide2_1932" /db_xref="GeneID:10482970" CDS 2033589..2034806 /locus_tag="Alide2_1932" /inference="protein motif:PFAM:PF06527" /note="KEGG: bxe:Bxe_C1175 transposition protein TniQ; manually curated; PFAM: TniQ" /codon_start=1 /transl_table=11 /product="TniQ family protein" /protein_id="YP_004387826.1" /db_xref="GI:330824523" /db_xref="InterPro:IPR009492" /db_xref="GeneID:10482970" /translation="MKPAPRWPLHPAPREAEALSSWLNRVALCYHMEVSELLEHDLGH GQVDDLDTAPPLALLAMLSQRSGIELDRLRCMSFAGWVPWLLDSLDDQIPAALETYAF QLSVLLPRLRRKTRSITSWRAWLPTQPIHRACPLCLNDPENQAVLLAWKLPLMLSCPL HGCWLESYWGVPGRFLGWENADAEPRTASDAIAVMDRRTWQALTTGHVELPRRRIHAG LWFRLLRTLLDELNTPLSTCGTYAGYLRQIWECCGHPLRAGQSLWRPYETLNPAVRLQ MLEAAATAISLIEVRDISPPGEHAKLFWSEPQTGFTSGLPAKAPKLEPVDHWQRAIQA IDEAIIEARHNPETARSLFALASYGRRDPASLEQLRATFAKEGIPPEFLSHYEPSLPF ACLRQNDGLSDKF" misc_feature 2033589..2034803 /locus_tag="Alide2_1932" /note="TniQ; Region: TniQ; pfam06527" /db_xref="CDD:148249" gene 2034867..2035037 /locus_tag="Alide2_1933" /pseudo /db_xref="GeneID:10482971" gene 2035040..2035489 /locus_tag="Alide2_1934" /db_xref="GeneID:10482972" CDS 2035040..2035489 /locus_tag="Alide2_1934" /inference="protein motif:TFAM:TIGR02391" /note="KEGG: shn:Shewana3_1247 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02391; PFAM: Conserved hypothetical protein CHP02391" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387827.1" /db_xref="GI:330824524" /db_xref="InterPro:IPR012654" /db_xref="GeneID:10482972" /translation="MDAARSRACRLKSALESRKVHAEVLNYCRAELLDENYFHAVFES TKGVAERIRSMSGLTMDGAELVSRTFSTQNPILVFGSLATESEKSEQKGFAHLLVGLF GAVRNPLAHAPKTNWPMSEQDALDILTLVSLIHRKLDRTLKANTAAL" misc_feature 2035085..2035453 /locus_tag="Alide2_1934" /note="Protein of unknown function (Hypoth_ymh); Region: Hypoth_Ymh; cl09741" /db_xref="CDD:164144" gene complement(2035433..2036503) /locus_tag="Alide2_1935" /db_xref="GeneID:10482973" CDS complement(2035433..2036503) /locus_tag="Alide2_1935" /inference="protein motif:PFAM:PF01636" /note="PFAM: Aminoglycoside phosphotransferase; KEGG: bxe:Bxe_C1178 hypothetical protein" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_004387828.1" /db_xref="GI:330824525" /db_xref="InterPro:IPR002575" /db_xref="GeneID:10482973" /translation="MGKDFYIQPDAADPVLDPDAVLAIVRLHAAGAKAVRAVDESGGE ARAYAIDNGLILKVQRPQQLRARTSLDKERFLLEQLAGLEGVRVPRVLGGGVAEPGIE YTLMTRMPGVPMHSARFDGDLRRRTLVDLGRMLRRIHAIPQQPLFEARLIPGDHTAAD VRTRFGGLFDDAVTAVARAAQPWPFALDPLQLARLAMRALPDADAWVALHSNPGPEHV FVDPQTRQLTGLIDFGDAYFSHPALDLRRWPRPIDRGRGSRRVLQRGENEREVQPDMA RGLCAHRHARHRTESGMPHCRARRVGRTCRAVALTAYVMAVLAPTDHPRKGSTPILWR HGEPLQRRGIRFQRAIQLAVNE" misc_feature complement(<2035802..2036368) /locus_tag="Alide2_1935" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" misc_feature complement(order(2035808..2035813,2035847..2035849, 2035853..2035858,2035868..2035870,2036177..2036188, 2036234..2036236,2036333..2036335,2036339..2036341)) /locus_tag="Alide2_1935" /note="active site" /db_xref="CDD:88612" misc_feature complement(order(2035808..2035813,2035847..2035849, 2035853..2035858,2035868..2035870,2036177..2036188, 2036234..2036236,2036333..2036335,2036339..2036341)) /locus_tag="Alide2_1935" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88612" gene complement(2036519..2038321) /locus_tag="Alide2_1936" /db_xref="GeneID:10482974" CDS complement(2036519..2038321) /locus_tag="Alide2_1936" /EC_number="3.6.3.44" /inference="protein motif:PRIAM:3.6.3.44" /note="PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: art:Arth_4258 ABC transporter-like protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Xenobiotic-transporting ATPase" /protein_id="YP_004387829.1" /db_xref="GI:330824526" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482974" /translation="MTATQSQPAPTTRRGLTTAQVGSLLAPQRRLLVAIAACVLAGAA LEVLPPLLVRQAVDAHLAVGRGDGLMLLGVLYLLVVAGQQALGFASAYGTAIAAQRAL RDLRARLFGHLQRLPARYFDTTPLGDTVSRCTADIDTIDRLFSSGIASLVADLVRLVT ITVTMLVLSPSLTLLCGLAVPPLLWFTRWFQLRVLAAERASREAVGSVNTALVETLGG AEVIRAFGRTEFFEHRFRGALQATQHAYLAATRYSTIYTPLMAILASLIVCGLLWAGA EGALAGWGVSIGTLTAFVLLFRRFFAPITTLGEEWQTVQSALSGAERVFQVLALPVEE TPVAHSVQQARSEPEPLIQLKDVIFGYVADRLVLNGVSLSVRAGEHVALVGRTGAGKS SLMHLAGGLYAPWSGEIRVAGADPRAMTDEERRQRLGVVPQTLQLFSGSVLDNLTMGD VLVTRTACEAAAKATGAHAFIRALPQGYDTPLDAGEAGAALSAGQRQLLALTRALVRQ PRVLLLDEATAAIDHASDAAFRAALRRDAHDSSRAVLIVAHRLSTALEADRVIVIEDG RILEQGAPDELIRCRGRFAALLAMETAGWDWHQR" misc_feature complement(2036561..2037994) /locus_tag="Alide2_1936" /note="ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]; Region: ATM1; COG5265" /db_xref="CDD:34862" misc_feature complement(2037410..>2037994) /locus_tag="Alide2_1936" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(2036576..2037268) /locus_tag="Alide2_1936" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2037146..2037169) /locus_tag="Alide2_1936" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(2036675..2036677,2036774..2036779, 2037023..2037025,2037143..2037151,2037155..2037160)) /locus_tag="Alide2_1936" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(2037023..2037034) /locus_tag="Alide2_1936" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(2036822..2036851) /locus_tag="Alide2_1936" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(2036774..2036791) /locus_tag="Alide2_1936" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(2036756..2036767) /locus_tag="Alide2_1936" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(2036669..2036689) /locus_tag="Alide2_1936" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(2038318..2040144) /locus_tag="Alide2_1937" /db_xref="GeneID:10482975" CDS complement(2038318..2040144) /locus_tag="Alide2_1937" /EC_number="3.6.3.44" /inference="protein motif:PRIAM:3.6.3.44" /note="PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: art:Arth_4257 ABC transporter-like protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="Xenobiotic-transporting ATPase" /protein_id="YP_004387830.1" /db_xref="GI:330824527" /db_xref="InterPro:IPR001140" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10482975" /translation="MAHYLWKLRPYYRQTAGQLVLGSLAGVVMNTAVVLPAVCLGRAI DAATHFAQGQATRATLLQAVALFAAATLATELPRLGKRWWLMTANARIRANLRADALR GVLAWPMAKLTATPVGDTMARVIGDVEVLGVGIREVIVETWDTLLFLVSFFVAMLVLD WSLTLQALIPVPFAMVLAWAAGRFIHQRTTAARQANGALTAGLQEQLSGIRVARLLGM KQAAQTRIERLADAQAHTNLAVARPRAGLPAVYTTLMAAGIVLVLWQGGEKVIAGAWT LGAFVTYLDLFLRFTGRGFRVPQLVNSVQAGGAAYARLAPLLAAALPARGEHRFASFR AGYLAGTTPRSTLTEPASRVERGLAVSLHNVSFSHGNADAAVTALNQVSLEISAGAFV AVTGPVGSGKSALAKALLGLYPLAGGTVSLDGDAPARHRGDIGYLPQEPFLFSGTVRE NITMGREQADLATMSALEIAALAKDVAGFEHGVDAEIGERGIRISGGQRQRVALARAA AAGPRLLVLDDPFSAVDVATEAQIIASLRAEFGRGAPAARQATIVLCSHRLAAFPQAD LVVVLDGGRIVERGSHEQLMLAGGLYARIYAAQVAMAQPEDA" misc_feature complement(2038348..2040132) /locus_tag="Alide2_1937" /note="ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132" /db_xref="CDD:31327" misc_feature complement(2039266..>2039898) /locus_tag="Alide2_1937" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(2038348..2039067) /locus_tag="Alide2_1937" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2038936..2038959) /locus_tag="Alide2_1937" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(2038474..2038476,2038588..2038593, 2038828..2038830,2038933..2038941,2038945..2038950)) /locus_tag="Alide2_1937" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(2038828..2038839) /locus_tag="Alide2_1937" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(2038636..2038665) /locus_tag="Alide2_1937" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(2038588..2038605) /locus_tag="Alide2_1937" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(2038570..2038581) /locus_tag="Alide2_1937" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(2038468..2038488) /locus_tag="Alide2_1937" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(2040191..2040550) /locus_tag="Alide2_1938" /db_xref="GeneID:10482976" CDS complement(2040191..2040550) /locus_tag="Alide2_1938" /inference="similar to AA sequence:KEGG:Bcep1808_7475" /note="KEGG: bvi:Bcep1808_7475 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387831.1" /db_xref="GI:330824528" /db_xref="GeneID:10482976" /translation="MRFIIAGAMFPALAATAREVPLTGPQIRATISGKYVTDERHWGH KYFADGRVERSENGRQRSARWSVKGNQLCLLQPEISKDEPICYSVLRDGQELQYKDDA QFVVYRGLVRPMPKREP" sig_peptide complement(2040497..2040550) /locus_tag="Alide2_1938" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.966) with cleavage site probability 0.707 at residue 18" gene complement(2040610..2041512) /locus_tag="Alide2_1939" /db_xref="GeneID:10482977" CDS complement(2040610..2041512) /locus_tag="Alide2_1939" /inference="protein motif:PFAM:PF07485" /note="PFAM: Uncharacterised protein family, LppY/LpqO; KEGG: pop:POPTR_594759 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387832.1" /db_xref="GI:330824529" /db_xref="InterPro:IPR011094" /db_xref="GeneID:10482977" /translation="MLRLTLSTLALAAGLLTTGAPAMAQAIDTAAIETATGLKGSYNQ AENVFKVSKPRDDVKINVDRWTMPPFMGLTSWAAFTPMGSSTMMMGDTVLFEDEVNPA MSAALDNGLEVTALHNHFFFDQPKVFFMHIGGMGDARKLATGVKAVYDRIAQVRAAQG TPASSFAGDIASPSHVTAAPIEEILGSKAQVKDGMVKVTLGRTAKMHGTTVGNEMGIN TWAAFAGDDEHAVVDGDFAMHENELQTVLKTMRGQSINIVAIHQHMTYEEPRYVFLHY WGKGKAVDLAQSVKKALDAQKAAK" sig_peptide complement(2041438..2041512) /locus_tag="Alide2_1939" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.865 at residue 25" misc_feature complement(2041057..2041428) /locus_tag="Alide2_1939" /note="Domain of Unknown Function (DUF1259); Region: DUF1529; pfam07485" /db_xref="CDD:148856" misc_feature complement(2040625..2040981) /locus_tag="Alide2_1939" /note="Domain of Unknown Function (DUF1259); Region: DUF1529; pfam07485" /db_xref="CDD:148856" gene complement(2041585..2041965) /locus_tag="Alide2_1940" /db_xref="GeneID:10482978" CDS complement(2041585..2041965) /locus_tag="Alide2_1940" /inference="similar to AA sequence:KEGG:Bxe_C1203" /note="KEGG: bxe:Bxe_C1203 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387833.1" /db_xref="GI:330824530" /db_xref="GeneID:10482978" /translation="MSAIPRLAFATLIQSLSLVAASAAPGPSELTGAQIKTVFVGNVI SEGAHWSAYLLPDGRTKSIELGRPHQGHWKIVGKELCVSISTGVEPECWTVLRKGKAY LLRAHGQDLYEVTPEPLSSKYPFD" sig_peptide complement(2041894..2041965) /locus_tag="Alide2_1940" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.853 at residue 24" gene complement(2041990..2042448) /locus_tag="Alide2_1941" /db_xref="GeneID:10482979" CDS complement(2041990..2042448) /locus_tag="Alide2_1941" /inference="protein motif:PFAM:PF09828" /note="PFAM: Chromate resistance exported protein; KEGG: bxe:Bxe_C1204 hypothetical protein" /codon_start=1 /transl_table=11 /product="chromate resistance exported protein" /protein_id="YP_004387834.1" /db_xref="GI:330824531" /db_xref="InterPro:IPR018634" /db_xref="GeneID:10482979" /translation="MKWITRERPKIDRIACPWLVARFIDQQAEFLYVPASEVLKTANA TGAIPYDIPNVELSHVGELCSFDSFLSKYHLDDPALRQLAEIVRGADTSRLDLTPQSA GLYALSLGLSHNFSDDHEMLQHGMVMYDALYAWCRACQAETHNWPPVMPA" misc_feature complement(2042038..2042442) /locus_tag="Alide2_1941" /note="Chromate resistance exported protein; Region: Chrome_Resist; cl01744" /db_xref="CDD:154566" gene complement(2042453..2043361) /locus_tag="Alide2_1942" /db_xref="GeneID:10482980" CDS complement(2042453..2043361) /locus_tag="Alide2_1942" /inference="protein motif:PFAM:PF02777" /note="KEGG: bxe:Bxe_C1205 putative superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; SMART: Rhodanese-like" /codon_start=1 /transl_table=11 /product="Manganese/iron superoxide dismutase" /protein_id="YP_004387835.1" /db_xref="GI:330824532" /db_xref="GO:0004784" /db_xref="GO:0046872" /db_xref="InterPro:IPR001763" /db_xref="InterPro:IPR019832" /db_xref="GeneID:10482980" /translation="MDLQLRPLTINLAALNGLSEELILSHHANNYTGAVKRLDAIRQQ LAHLDWPTAPVFMINGLKREELIAANSAWLHELYFDTLGGDGALPDSGLAVALARDFG SVDRWRTEFSALAKAMGGGSGWALLSWSTREARLINHWAADHTNLLAGATPLLALDMY EHAYHMDFGAKAAAYVDAFMQNIRWNAVMQRYAAAVEADALPWSAAPEEVGGDLQLID VRRTAGYAQAPDRIAGAIRRDPVQLANWSREIDTSKPVLVYCVHGHEVSQSVALALRA HGLDARFVAGGIEACRAAGVTFEAKE" misc_feature complement(2042777..2043361) /locus_tag="Alide2_1942" /note="Superoxide dismutase [Inorganic ion transport and metabolism]; Region: SodA; COG0605" /db_xref="CDD:30950" misc_feature complement(2042789..2043097) /locus_tag="Alide2_1942" /note="Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777" /db_xref="CDD:145761" misc_feature complement(2042483..2042770) /locus_tag="Alide2_1942" /note="GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a...; Region: GlpE_ST; cd01444" /db_xref="CDD:29075" misc_feature complement(2042582..2042584) /locus_tag="Alide2_1942" /note="active site residue [active]" /db_xref="CDD:29075" gene complement(2043423..2044619) /locus_tag="Alide2_1943" /db_xref="GeneID:10482981" CDS complement(2043423..2044619) /locus_tag="Alide2_1943" /inference="protein motif:TFAM:TIGR00937" /note="KEGG: bxe:Bxe_C1206 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter" /codon_start=1 /transl_table=11 /product="chromate transporter" /protein_id="YP_004387836.1" /db_xref="GI:330824533" /db_xref="InterPro:IPR003370" /db_xref="InterPro:IPR014047" /db_xref="GeneID:10482981" /translation="MNETTSAAAISSAAPRSYTLWQLIAYFLRLGALGFGGPVALAGY MDRDLVERRQWFTEADYKEGLALAQLAPGPLAAQLAIYLGFVHYSFLGATLVGLAFVL PSFLMVIGLGWAYTHFGGLGWMQAVFYGVSSAVIGIIAISTWKLSTKNIGKDKLQWAI FAVAAAVTIITQSEELWLFLGAGVLVWLLRAPPKFIKPSSTLHSSAIPLLALLGLSNV DWTKLWQITKYFFYAGSFVFGSGLAIVPFLYSGVVKEYGWLTDHQFLDAVAVAMITPG PVVVTTGFIGFLVADFWGAVAAALATFLPCYLLTVLPAPYFKKYGKKPGIVAFVDGVT AAAIGSLAGAVVVIGVRSIKDVPTALLALGTAALLWKFKKLPEPIVVAAAALIGLVVY PLVTRS" misc_feature complement(2044056..2044565) /locus_tag="Alide2_1943" /note="Chromate transporter; Region: Chromate_transp; pfam02417" /db_xref="CDD:190304" misc_feature complement(2043486..2044541) /locus_tag="Alide2_1943" /note="chromate transporter, chromate ion transporter (CHR) family; Region: 2A51; TIGR00937" /db_xref="CDD:162120" misc_feature complement(2043549..2043953) /locus_tag="Alide2_1943" /note="Chromate transporter; Region: Chromate_transp; pfam02417" /db_xref="CDD:190304" gene complement(2044676..2045638) /locus_tag="Alide2_1944" /db_xref="GeneID:10482982" CDS complement(2044676..2045638) /locus_tag="Alide2_1944" /inference="protein motif:PFAM:PF09828" /note="PFAM: Chromate resistance exported protein; KEGG: bxe:Bxe_C1207 putative chromate resistance protein" /codon_start=1 /transl_table=11 /product="chromate resistance exported protein" /protein_id="YP_004387837.1" /db_xref="GI:330824534" /db_xref="InterPro:IPR018634" /db_xref="GeneID:10482982" /translation="MTLTSDSWLTLIVSLPSASATARMRIWRAVKALGCAALRDGAYL LPAQAEQAAQLQMLADEALQEGGQAWLLQVQALDLAEQATFQALFDRTADYTPWLEEL AQARQTLSALSAAELQRTQRKHARAYEVIRKIDFFPGETSIRADAQWRDFANALESMQ SPGEPQPMAGRIARRDRMQYQGRVWATRRHLWVDRVASAWLIQRFIDPHARFLWLNTA ADCPSDALGFDFDGATFSHVGERVTFEVLLASFGLEDDRGLSRLGAMVHALDVGGATT PEASGFEAVLAGARKRWPDDDALLVDIGGVLDSLHAHFSSSRKT" misc_feature complement(2044694..2045086) /locus_tag="Alide2_1944" /note="Chromate resistance exported protein; Region: Chrome_Resist; cl01744" /db_xref="CDD:154566" gene 2046800..2047393 /locus_tag="Alide2_1945" /db_xref="GeneID:10482983" CDS 2046800..2047393 /locus_tag="Alide2_1945" /inference="protein motif:PFAM:PF00239" /note="KEGG: bxe:Bxe_C1209 putative resolvase; PFAM: Resolvase, N-terminal; Protein of unknown function DUF932; SMART: Resolvase, N-terminal" /codon_start=1 /transl_table=11 /product="resolvase domain-containing protein" /protein_id="YP_004387838.1" /db_xref="GI:330824535" /db_xref="GO:0000150" /db_xref="GO:0003677" /db_xref="InterPro:IPR006119" /db_xref="InterPro:IPR009276" /db_xref="GeneID:10482983" /translation="MLASRFASHSPALRSDYPLSDDQIRRVAPSIFADAPHESRSERY SYMALRPGDTLVVWKLDRLGRDLRHLINTVHDLTGRGIGLKVLTGHGAAIDTTTAAGK LVFGIFAALAEFERELIAERTVAGLASARARGRKGGRPFKMTAAKLRLAMAAMGQSET KVGDLCQELGITRQTLYRHISPKGELRPDGEKLLSRI" misc_feature <2046941..2047168 /locus_tag="Alide2_1945" /note="Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768" /db_xref="CDD:58117" misc_feature order(2046977..2046979,2047118..2047123,2047127..2047132, 2047142..2047144) /locus_tag="Alide2_1945" /note="Presynaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature order(2046980..2046985,2046992..2046994) /locus_tag="Alide2_1945" /note="catalytic residues [active]" /db_xref="CDD:58117" misc_feature order(2046995..2046997,2047010..2047015,2047106..2047108, 2047115..2047120,2047127..2047132,2047139..2047141, 2047148..2047150) /locus_tag="Alide2_1945" /note="Synaptic Antiparallel dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature order(2047064..2047066,2047076..2047081,2047106..2047111, 2047118..2047123,2047130..2047132,2047142..2047144, 2047151..2047153,2047163..2047165) /locus_tag="Alide2_1945" /note="Synaptic Flat tetramer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature order(2047064..2047066,2047121..2047123,2047130..2047132, 2047142..2047144,2047151..2047153,2047163..2047165) /locus_tag="Alide2_1945" /note="Synaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature order(2047145..2047147,2047163..2047168) /locus_tag="Alide2_1945" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:58117" misc_feature 2047217..2047339 /locus_tag="Alide2_1945" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569" /db_xref="CDD:119388" misc_feature order(2047217..2047222,2047319..2047324,2047328..2047336) /locus_tag="Alide2_1945" /note="DNA-binding interface [nucleotide binding]; DNA binding site" /db_xref="CDD:119388" gene complement(2047432..2047752) /locus_tag="Alide2_1946" /db_xref="GeneID:10482984" CDS complement(2047432..2047752) /locus_tag="Alide2_1946" /inference="similar to AA sequence:KEGG:Bxe_C1210" /note="manually curated; KEGG: bxe:Bxe_C1210 transposon modulator protein" /codon_start=1 /transl_table=11 /product="transposon modulator protein" /protein_id="YP_004387839.1" /db_xref="GI:330824536" /db_xref="GeneID:10482984" /translation="MDGLRRRAQAFERGQGFLFAKPMPAAAFAVFVSQWRGATMNAND PTATSCCVCCKEIPLDAAFTPEGAEYVEHFCGLECYQRFQARASTATETSGEPNACGS PPSN" misc_feature complement(2047669..>2047710) /locus_tag="Alide2_1946" /note="RNase II stability modulator; Provisional; Region: PRK10060" /db_xref="CDD:182215" misc_feature complement(2047438..2047644) /locus_tag="Alide2_1946" /note="Domain of unknown function (DUF3330); Region: DUF3330; pfam11809" /db_xref="CDD:152245" gene complement(2047768..2048004) /locus_tag="Alide2_1947" /db_xref="GeneID:10482985" CDS complement(2047768..2048004) /locus_tag="Alide2_1947" /inference="protein motif:PFAM:PF05052" /note="PFAM: MerE; KEGG: bxe:Bxe_C1211 putative mercury resistance protein" /codon_start=1 /transl_table=11 /product="MerE family protein" /protein_id="YP_004387840.1" /db_xref="GI:330824537" /db_xref="InterPro:IPR007746" /db_xref="GeneID:10482985" /translation="MNSPERMPAETHKPFTGYLWGTLAVLTCPCHLSILAAVLAGTTA GAFLVEYWVITALGLTGLFLLSLARALRAFRERS" misc_feature complement(<2047843..2048004) /locus_tag="Alide2_1947" /note="MerE protein; Region: MerE; cl04911" /db_xref="CDD:186639" gene complement(2048001..2048366) /locus_tag="Alide2_1948" /db_xref="GeneID:10482986" CDS complement(2048001..2048366) /locus_tag="Alide2_1948" /inference="protein motif:TFAM:TIGR02054" /note="TIGRFAM: Mercuric resistence transcriptional repressor protein MerD; PFAM: HTH transcriptional regulator, MerR; KEGG: bxe:Bxe_C1212 transcriptional regulator MerD; SMART: HTH transcriptional regulator, MerR" /codon_start=1 /transl_table=11 /product="mercuric resistance transcriptional repressor protein MerD" /protein_id="YP_004387841.1" /db_xref="GI:330824538" /db_xref="GO:0003677" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR011797" /db_xref="GeneID:10482986" /translation="MNAYTVSRLAFDAGVSVHIVRDYLLRGLLRPVACTTGGYGLFDD AALQRLCFVRAAFEAGIGLGALARLCRALDAANCDETAAQLAVLRQFVERRREALANL EVQLAAMPTAPAQHAESLP" misc_feature complement(2048004..2048366) /locus_tag="Alide2_1948" /note="transcriptional regulator MerD; Provisional; Region: PRK13749" /db_xref="CDD:184299" misc_feature complement(2048037..2048357) /locus_tag="Alide2_1948" /note="Helix-Turn-Helix DNA binding domain of the MerD transcription regulator; Region: HTH_MerD; cd01111" /db_xref="CDD:133386" misc_feature complement(order(2048247..2048255,2048304..2048306, 2048346..2048354)) /locus_tag="Alide2_1948" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133386" misc_feature complement(order(2048049..2048054,2048061..2048063, 2048073..2048075,2048091..2048093,2048103..2048105, 2048160..2048162,2048187..2048192,2048202..2048204, 2048211..2048213)) /locus_tag="Alide2_1948" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:133386" gene complement(2048384..2050069) /locus_tag="Alide2_1949" /db_xref="GeneID:10482987" CDS complement(2048384..2050069) /locus_tag="Alide2_1949" /EC_number="1.16.1.1" /inference="protein motif:TFAM:TIGR02053" /note="TIGRFAM: Mercury reductase, MerA; KEGG: bxe:Bxe_C1213 putative mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation" /codon_start=1 /transl_table=11 /product="mercuric reductase" /protein_id="YP_004387842.1" /db_xref="GI:330824539" /db_xref="GO:0016152" /db_xref="GO:0016491" /db_xref="GO:0045340" /db_xref="GO:0050660" /db_xref="GO:0050661" /db_xref="InterPro:IPR004099" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR013027" /db_xref="InterPro:IPR021179" /db_xref="GeneID:10482987" /translation="MTTLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAI EAGTSSDALTTAVAGLGYEATLADAPPTDNRAGLLDKMRGWIGAADKPSGNERPLQVV VIGSGGAAMAAALKAVEQGAHVSLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRES PFDGGIAATVPAIDRSKLLAQQQARVEELRHAKYEGILDGNPAITVVHGEARFKDEQS LVVRLNDGGERVVAFDRCLVATGASPAVPPIPGLKESPYWTSTEALVSDTLPERLAVI GSSVVALELAQAFARLGSQVTILARNTLFFRDDPSIGEAVTAAFRAEGIKVLEHTQAS QVAHVNGEFVLTTGHGEVRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDKGMR TSTPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAAINLTAMPAVVFTDPQVATV GYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQVVAPEA GELIQTAVLAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFSKDVKQLSCCAG" misc_feature complement(2048387..2050069) /locus_tag="Alide2_1949" /note="putative mercuric reductase; Provisional; Region: PRK13748" /db_xref="CDD:184298" misc_feature complement(2049875..2050063) /locus_tag="Alide2_1949" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature complement(order(2050028..2050030,2050037..2050045)) /locus_tag="Alide2_1949" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature complement(2049017..2049256) /locus_tag="Alide2_1949" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(2048432..2048761) /locus_tag="Alide2_1949" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene complement(2050108..2050533) /locus_tag="Alide2_1950" /db_xref="GeneID:10482988" CDS complement(2050108..2050533) /locus_tag="Alide2_1950" /inference="similar to AA sequence:KEGG:mma_1750" /note="KEGG: mms:mma_1750 putative mercury transport protein MerC" /codon_start=1 /transl_table=11 /product="putative mercury transport protein MerC" /protein_id="YP_004387843.1" /db_xref="GI:330824540" /db_xref="GeneID:10482988" /translation="MGLITRIAGKTGALGSVVSAMGCAACFPAIASFGAAIGLGFLSQ YEGLFIGILLPMFAGIALLANAIAWLNHRQWRRTALGTIGPILVLAAVFLMRAYGWQS GGLLYVGLALMVGVSVWDFISPAHRRCGPDSCELPEQRG" misc_feature complement(2050114..2050533) /locus_tag="Alide2_1950" /note="MerC mercury resistance protein; Region: MerC; cl03934" /db_xref="CDD:186606" sig_peptide complement(2050438..2050533) /locus_tag="Alide2_1950" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.736 at residue 32" gene complement(2050561..2050836) /locus_tag="Alide2_1951" /db_xref="GeneID:10482989" CDS complement(2050561..2050836) /locus_tag="Alide2_1951" /inference="protein motif:TFAM:TIGR02052" /note="KEGG: mms:mma_1751 mercuric transport periplasmic binding protein; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein" /codon_start=1 /transl_table=11 /product="mercuric transport protein periplasmic component" /protein_id="YP_004387844.1" /db_xref="GI:330824541" /db_xref="GO:0015097" /db_xref="GO:0045340" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR011795" /db_xref="GeneID:10482989" /translation="MKKLFASLALAAFVAPVFAATQTVTLSVPGMTCASCPITVKHAL SKVEGVSKTDVSFDKRQAVVTFDDAKTNVQKLTKATEDAGYPSSLKR" sig_peptide complement(2050777..2050836) /locus_tag="Alide2_1951" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 at residue 20" misc_feature complement(2050573..2050761) /locus_tag="Alide2_1951" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature complement(order(2050729..2050731,2050738..2050746)) /locus_tag="Alide2_1951" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" gene complement(2050850..2051200) /locus_tag="Alide2_1952" /db_xref="GeneID:10482990" CDS complement(2050850..2051200) /locus_tag="Alide2_1952" /inference="protein motif:PFAM:PF02411" /note="PFAM: Mercuric transport protein MerT; KEGG: bxe:Bxe_C1216 putative mercuric transport protein" /codon_start=1 /transl_table=11 /product="Mercuric transport protein MerT" /protein_id="YP_004387845.1" /db_xref="GI:330824542" /db_xref="GO:0015097" /db_xref="InterPro:IPR003457" /db_xref="GeneID:10482990" /translation="MSEPQNGRGALFAGGLAAILASACCLGPLVLVTLGFSGAWIGNL TVLEPYRPIFIGAALVALFFAWRRIVRPTAACKPGEVCAIPQVRTTYKLIFWFVAVLV LVALGFPYVMPFFY" misc_feature complement(2050853..2051200) /locus_tag="Alide2_1952" /note="MerT mercuric transport protein; Region: MerT; cl03578" /db_xref="CDD:186578" gene 2051272..2051706 /locus_tag="Alide2_1953" /db_xref="GeneID:10482991" CDS 2051272..2051706 /locus_tag="Alide2_1953" /inference="protein motif:TFAM:TIGR02051" /note="TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: bxe:Bxe_C1217 putative transcriptional regulator MerR; SMART: HTH transcriptional regulator, MerR" /codon_start=1 /transl_table=11 /product="MerR family transcriptional regulator" /protein_id="YP_004387846.1" /db_xref="GI:330824543" /db_xref="GO:0003677" /db_xref="GO:0045340" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR011794" /db_xref="InterPro:IPR015358" /db_xref="GeneID:10482991" /translation="MENNLENLTIGVFAKAAGVNVETIRFYQRKGLLPEPDKPYGSIR RYGEADVTRVRFVKSAQRLGFSLDEIAELLRLEDGTHCEEASSLAEHKLKDVREKMTD LARMESVLSELVCACHLRQGNVSCPLIASLQGKKEPRSTDAV" misc_feature 2051272..2051703 /locus_tag="Alide2_1953" /note="putative transcriptional regulator MerR; Provisional; Region: PRK13752" /db_xref="CDD:184302" misc_feature 2051293..2051670 /locus_tag="Alide2_1953" /note="Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator; Region: HTH_MerR1; cd04783" /db_xref="CDD:133410" misc_feature order(2051296..2051304,2051344..2051346,2051395..2051403) /locus_tag="Alide2_1953" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133410" misc_feature order(2051437..2051439,2051446..2051448,2051458..2051463, 2051488..2051490,2051515..2051520,2051527..2051529, 2051536..2051538,2051548..2051550,2051566..2051568, 2051578..2051580,2051587..2051592,2051611..2051613, 2051626..2051631,2051647..2051649,2051653..2051655) /locus_tag="Alide2_1953" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133410" misc_feature order(2051515..2051517,2051620..2051622,2051647..2051649) /locus_tag="Alide2_1953" /note="mercury binding site [ion binding]; other site" /db_xref="CDD:133410" gene 2051818..2052279 /locus_tag="Alide2_1954" /pseudo /db_xref="GeneID:10482992" gene 2052282..2055255 /locus_tag="Alide2_1955" /pseudo /db_xref="GeneID:10482993" gene 2055403..2055849 /locus_tag="Alide2_1956" /db_xref="GeneID:10482994" CDS 2055403..2055849 /locus_tag="Alide2_1956" /inference="protein motif:TFAM:TIGR03757" /note="KEGG: rpf:Rpic12D_0686 protein of unknown function DUF1525; TIGRFAM: Integrating conjugative element protein, PFL4709; PFAM: Integrating conjugative element protein, PFL4709" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387847.1" /db_xref="GI:330824544" /db_xref="InterPro:IPR011090" /db_xref="GeneID:10482994" /translation="MTAPLFNSIPRLRATRIACAGGVLLALCGQVASAADVLVVTDSR NPVQSTAGVRVIELDLPERIEAELAAGLPNDASRAATLVQQRLRDGGPALQRRIGSAY QGVADAWGLGIAKVPAVVVDRRYVVYGEPDVARALARIEAHRRTQP" sig_peptide 2055403..2055507 /locus_tag="Alide2_1956" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.978 at residue 35" misc_feature 2055502..2055840 /locus_tag="Alide2_1956" /note="Protein of unknown function (DUF1525); Region: DUF1525; cl06515" /db_xref="CDD:164086" gene 2055846..2056796 /locus_tag="Alide2_1957" /db_xref="GeneID:10482995" CDS 2055846..2056796 /locus_tag="Alide2_1957" /inference="protein motif:TFAM:TIGR03756" /note="KEGG: rpf:Rpic12D_0687 protein of unknown function DUF1527; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387848.1" /db_xref="GI:330824545" /db_xref="InterPro:IPR011092" /db_xref="GeneID:10482995" /translation="MKRLLSASSRRARLAIASVLLGGAASSFALNTATIVSSALSPDC IEYRVVGICYWLFCTWTGCTVRTSVKVRHYVPDAVVSSYSNTGENPWVEVRAMSTPNP TAQAGGDGTTNHDNENNLAKFKNADVIGHPGGYVFSQFASSFGYSCEGAGTAFMPYLL STLDTIAWRYNIPEAFYPEALIPGRREIGTRTGLNLWGNVYARGGFLHQTDDHKSGAV VAQRAGDVVTRRNQIHVYQPLLANSRDGYWPAGALMETDASTGKWQPLTPTLSNSCVV FPHSGSLTQAQQGDYAWALWRPYACCQRRGQVFLGSVDFN" sig_peptide 2055846..2055935 /locus_tag="Alide2_1957" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.713 at residue 30" misc_feature 2055933..2056787 /locus_tag="Alide2_1957" /note="TraU protein; Region: TraU; cl06067" /db_xref="CDD:195235" gene 2056807..2058207 /locus_tag="Alide2_1958" /db_xref="GeneID:10482996" CDS 2056807..2058207 /locus_tag="Alide2_1958" /inference="protein motif:TFAM:TIGR03755" /note="TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: rpf:Rpic12D_0688 hypothetical protein" /codon_start=1 /transl_table=11 /product="integrating conjugative element protein" /protein_id="YP_004387849.1" /db_xref="GI:330824546" /db_xref="InterPro:IPR021204" /db_xref="GeneID:10482996" /translation="MKTSISRCAQRAKPYTLSVALACAVTAGAGVAWAQTRINPTGVG VSGSVIGDDVLYSIGGGRAVSMGGAGNMQSIGVGIGWNSNLICGDMSITTTLQNQLNG ITNGFQQIMSNVIQSATSAVASLPALIIQRADPGLYNLLTNGVLQARLDFDRSKLTCK AMANRMADMAGGQAGWDQLAEGFALRDAVSSTDAVSAVEQAESNKGNNGVPWVGGGNA GGSGQGSIKVVGDVTRAGYNLLNSRGVTDTSSIPRASCGNRLTCQTWSSPQAAADFAT RVLGEREQRTCETCTKTQTTPGVGLTPVIQEEYETKLQALQGLVTGSTPMTVANLETA GSNSLPITRGVIEALRDEPDQDLLGKRLASEAALSSVLEKALLLQRTLLTGKKEPNVA ANELAVKAVDQENTALEQEINNLKTELELRRTLAGNSAMAIVQRHGTRAAGSRGIFEG DTTRDRLKEVQKPRNN" sig_peptide 2056807..2056911 /locus_tag="Alide2_1958" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 at residue 35" misc_feature 2057017..2058195 /locus_tag="Alide2_1958" /note="integrating conjugative element protein, PFL_4711 family; Region: conj_TIGR03755" /db_xref="CDD:163467" gene 2058207..2058566 /locus_tag="Alide2_1959" /db_xref="GeneID:10482997" CDS 2058207..2058566 /locus_tag="Alide2_1959" /inference="similar to AA sequence:KEGG:Rpic12D_0689" /note="KEGG: rpf:Rpic12D_0689 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387850.1" /db_xref="GI:330824547" /db_xref="GeneID:10482997" /translation="MAARAWTWLRPTWLFNRRVALALLWVLAVAGIAAGVNVVGLHVV GSIDGWERWLREHSVHFLAWRLLVYAATAYGWWWMRRRLREREPSPEAHQRLLRVEIA AVVTLVLLEGSQLLRGG" sig_peptide 2058207..2058308 /locus_tag="Alide2_1959" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.424 at residue 34" gene 2058590..2060107 /locus_tag="Alide2_1960" /db_xref="GeneID:10482998" CDS 2058590..2060107 /locus_tag="Alide2_1960" /inference="similar to AA sequence:KEGG:Rpic12D_0690" /note="KEGG: rpf:Rpic12D_0690 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387851.1" /db_xref="GI:330824548" /db_xref="GeneID:10482998" /translation="MTLYTTDYLEYYLTLVGWIVNNGIWNILVASGVFALPFVVIVVQ EWLRARAEGADEGNKGVLSSMRIENRVWVAIVVILFAGVPFIPVDLSTIRFDTTRSAQ CQVSVPQPNDTGWSTAYTTLNNQSALVPVWWFFMHAISKAVTGGAVAAIPCGTDLRQM RMDVDATRIDDPVLAQEVGDFVHDCYGPSRAKLFMSRPTLSDDDMNDVTWIGSSYFLD NAGFYDTYHSNTPRTAWPYDATRDAGLAQVDSGGGYPTCRQWWSDGNSGLRARLQAQV DPDLLTRIGRWAGFLSQGEVNDSVIRAVVSPRQQKMNQGSVYTDYGGQIEKTLPNIVT RGAGDLGMTMGSLGFFPAMDVVRQALPMVLSLLKMALVVCIPLVLVFGTYELKALVAV SCVQFALFFVDFWFQLARWLDSTILDALYGWGFGANRPHSNFDPLIGLNNAFGDMLLN FVMATMFIVLPTFWVASLGWVGVRAGNAIQGLAAGTRDAQAAGGKGAGVALKAVK" misc_feature 2058635..2060053 /locus_tag="Alide2_1960" /note="TraG-like protein, N-terminal region; Region: TraG_N; pfam07916" /db_xref="CDD:149152" gene complement(2060108..2060479) /locus_tag="Alide2_1961" /db_xref="GeneID:10482999" CDS complement(2060108..2060479) /locus_tag="Alide2_1961" /inference="similar to AA sequence:KEGG:Rpic12D_0691" /note="KEGG: rpf:Rpic12D_0691 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387852.1" /db_xref="GI:330824549" /db_xref="GeneID:10482999" /translation="MKTAAQTTFAERLGRALGRAWRGCARLDRQAQGWLRAQGLAPGA ARAASLGVKLAVIGILLYTAFWLALLLAFALAGAWLLRNDDGSYDEEEQTEWRHGPAG FGLYTSNDQRIDPHDPDDDQT" misc_feature complement(2060141..>2060236) /locus_tag="Alide2_1961" /note="Protein of unknown function (DUF3742); Region: DUF3742; pfam12553" /db_xref="CDD:152987" gene complement(2060602..2061066) /locus_tag="Alide2_1962" /db_xref="GeneID:10483000" CDS complement(2060602..2061066) /locus_tag="Alide2_1962" /inference="similar to AA sequence:KEGG:Daci_4188" /note="KEGG: dac:Daci_4188 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387853.1" /db_xref="GI:330824550" /db_xref="GeneID:10483000" /translation="MQQHGWTLLFHDNLIEQLTKLRAAVLRAQENDPEGFASNANVKF FRALVQLMQDVVPSDPARDEYRQGNTMGPAYRHWRRAKLGRRYRLFFRYDSKAKVIVY AWVNDEQTLRSAGSKSDPYAVFEKMLGRGNPPDDWAALVTASKADWQGERKG" misc_feature complement(2060626..2061048) /locus_tag="Alide2_1962" /note="Toxin with endonuclease activity YhaV; Region: Toxin_YhaV; pfam11663" /db_xref="CDD:152099" gene complement(2061066..2061383) /locus_tag="Alide2_1963" /db_xref="GeneID:10483001" CDS complement(2061066..2061383) /locus_tag="Alide2_1963" /inference="protein motif:TFAM:TIGR01439" /note="TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: dac:Daci_4189 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted" /codon_start=1 /transl_table=11 /product="AbrB family transcriptional regulator" /protein_id="YP_004387854.1" /db_xref="GI:330824551" /db_xref="InterPro:IPR006339" /db_xref="InterPro:IPR007159" /db_xref="GeneID:10483001" /translation="MPEIHEVATLTSKGQITLPKSIRQVLGLDTGGKVAFDLRGGEVV VTRADAEHEDPAIGAFLTLLARDIEAGRNIRGLPEDLARTMLEHAGHKVFLGDDFDED VEI" misc_feature complement(<2061141..2061383) /locus_tag="Alide2_1963" /note="SpoVT / AbrB like domain; Region: SpoVT_AbrB; cl00877" /db_xref="CDD:186236" gene 2061697..2063562 /locus_tag="Alide2_1964" /db_xref="GeneID:10483002" CDS 2061697..2063562 /locus_tag="Alide2_1964" /inference="protein motif:TFAM:TIGR03760" /note="KEGG: rpf:Rpic12D_0694 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal" /codon_start=1 /transl_table=11 /product="integrating conjugative element relaxase" /protein_id="YP_004387855.1" /db_xref="GI:330824552" /db_xref="InterPro:IPR011093" /db_xref="InterPro:IPR011119" /db_xref="InterPro:IPR022391" /db_xref="GeneID:10483002" /translation="MLSLFQRKRPPPASGAAPIPTPPADPGKGLMRPEPAASLLATPR RQRLLEHIWQRTSLSRCQFATLYLAPLERYAELVQQFPASESHHHAYPGGMLDHGLEI VAYALKLRQSHLLPAGTTPEAQAAQAEAWTAGTAYAALLHDVGKVAVDLHVEYADGTV WHPWHGPLRRPYRFRYRKEREYRLHSAATGLLYARLLDPGIFDWLADYPDLWAALLYV LAGQYEHAGTLGELVVQADQASVAQELGGDPSKALAAPKHALQRKLLDGLRFLLREEF KLNQPQASDGWLTQDALWLVSKTVSDKLRAHLLQQGIDGIPASNTAVFNVLQDHGIAL PTPDGKAIWKATVASDAGWSHSFTFLKLSPALIWEAAERPAPFAGQVRVEQEDAAQPE PAAPGAAQPGPAPSAAPPVLSTAADNGVGALLDLLDMAPAASAPPPMPPEPVADARAD AEGDSLASAAAPPPAPPALAPRPQAEPSGEDFMAWLTQGVGSRRLIVNDAKALVHTVA GTAYLVSPGVFQRYAQEHPQVAAVAKQEKLEEWQWVQKRFEKLGAHRKQASGLNIWTC DVTGPRKSRRLHGYLLARPEALFGDVPPDNPYLRLATKPPKRENPAVQNDNDEQG" misc_feature 2061781..2062722 /locus_tag="Alide2_1964" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature 2063179..2063499 /locus_tag="Alide2_1964" /note="Protein of unknown function (DUF1528); Region: DUF1528; pfam07515" /db_xref="CDD:191765" gene complement(2063589..2063894) /locus_tag="Alide2_1965" /db_xref="GeneID:10483003" CDS complement(2063589..2063894) /locus_tag="Alide2_1965" /inference="protein motif:PFAM:PF01381" /note="KEGG: rpf:Rpic12D_0695 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004387856.1" /db_xref="GI:330824553" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10483003" /translation="MQKRPIQRGRPTGTTTYEAEPAIAFGAAVRDERTSQGIAQETLA HLAGIERSHVGKIERGEHTPTLPLILKIARALKCSSAHLMALTEAKLAEPAPSKSED" misc_feature complement(2063646..2063819) /locus_tag="Alide2_1965" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature complement(order(2063718..2063720,2063793..2063795, 2063805..2063807)) /locus_tag="Alide2_1965" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(order(2063721..2063723,2063796..2063798)) /locus_tag="Alide2_1965" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature complement(order(2063715..2063720,2063730..2063732, 2063739..2063741,2063772..2063777)) /locus_tag="Alide2_1965" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene 2064013..2064633 /locus_tag="Alide2_1966" /db_xref="GeneID:10483004" CDS 2064013..2064633 /locus_tag="Alide2_1966" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; KEGG: rpf:Rpic12D_0696 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR substrate-binding protein" /protein_id="YP_004387857.1" /db_xref="GI:330824554" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10483004" /translation="MTSSDACTAIRVAVLGGWVPSQLADVLALQRAEEPETTATLVEC AGSTPAGEVSRGGFDFALSTADVDWPGWVCEPLWHDTLAVAVAKRSHLLVHRDVPCHE LQKQPLICAQSTADEPWQALVHLLIGDAPHEQVVSTFDMTMTLVAAGYGIAIAPAARL AGYQCRGIAVRPLAGAPPIVMAYLLHTCEALTEPQERFARRVRSVT" misc_feature 2064040..2064561 /locus_tag="Alide2_1966" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(2064082..2064087,2064091..2064096,2064103..2064105, 2064115..2064117,2064121..2064141,2064412..2064426, 2064442..2064447,2064451..2064456) /locus_tag="Alide2_1966" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(2064646..2066568) /locus_tag="Alide2_1967" /db_xref="GeneID:10483005" CDS complement(2064646..2066568) /locus_tag="Alide2_1967" /inference="protein motif:PFAM:PF00589" /note="PFAM: Integrase, catalytic core, phage; KEGG: dac:Daci_4139 integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004387858.1" /db_xref="GI:330824555" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10483005" /translation="MLSDLMVRQAKATGNTYTLADSDGLSLFVSANGAKAWHFRFTWG GKRDRMSFGSYPALSLKEARELRDEARNLLAKGVNPHSERKRKRHAIVLAGEHTFQAV YDQWLAHRRLSLEEGRQTSLEQIARVFKKDVFPVLRHLTIYDITRAHLLDIIGKVEKR GSLSVAEKLRTWFTQLFTYATVAIPNMHDNPSKDLEVVALPLPPVDHNPFLRMPELPI MLQTLRKYRGRLNTQLGLRLLMLTGVRTGELRFATPDQFDLEQGLWIIPVARLKQRAL LTKKKRKRLVDIPPYIVPLPVQAQEIVRHLLDQCKPAQVYLIPGDWCLKHPVSENTFN GALKRMGYEDQLTGHGIRATISTALNELGYPKKWVDAQLSHADPDKISATYNHAEYVE QRRVMMQDWADRLDLFEQNQVEVASRHLTITLQGLPTIAGQAAVQPPVVDLTAPQLIV TAPTPDMPAAPASVQRLSAVRMPEYARPRLSEVQRERLRVLETFEAPHNLSVADYAKL AGKSRRWITYEIQAGNLLSIHMGNRGQRMPDWQLDPLKRRLVQFVLKQVPRGLDTWAI YHALLQPYDALGGRSAIEAVNPKNLHLAARLVAAQSIAADDPEDSDIPVQVRRSVQRL VQDAITFDAAEDLMEP" misc_feature complement(2065360..2066565) /locus_tag="Alide2_1967" /note="integrase; Provisional; Region: PRK09692" /db_xref="CDD:170049" misc_feature complement(2065360..2066493) /locus_tag="Alide2_1967" /note="Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801" /db_xref="CDD:29502" misc_feature complement(order(2065414..2065416,2065444..2065446, 2065513..2065515,2065522..2065524,2065753..2065755, 2065834..2065836)) /locus_tag="Alide2_1967" /note="active site" /db_xref="CDD:29502" misc_feature complement(order(2065414..2065416,2065444..2065446, 2065513..2065515,2065522..2065524,2065753..2065755, 2065834..2065836)) /locus_tag="Alide2_1967" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29502" gene complement(2066808..2066881) /locus_tag="Alide2_R0026" /note="tRNA-Gly4" /db_xref="GeneID:10483006" tRNA complement(2066808..2066881) /locus_tag="Alide2_R0026" /product="tRNA-Gly" /db_xref="GeneID:10483006" gene complement(2066998..2067540) /locus_tag="Alide2_1968" /db_xref="GeneID:10483007" CDS complement(2066998..2067540) /locus_tag="Alide2_1968" /inference="protein motif:TFAM:TIGR00738" /note="KEGG: ajs:Ajs_1664 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2" /codon_start=1 /transl_table=11 /product="BadM/Rrf2 family transcriptional regulator" /protein_id="YP_004387859.1" /db_xref="GI:330824556" /db_xref="InterPro:IPR000944" /db_xref="GeneID:10483007" /translation="MRLTTRGKLAVTAITDVALHSHGHPVALPGISVRQGISLSYLED IFSALRRAGLVHSVRGPGGGYMLTRPPQSLSVAEIVMASEKYMAHANDKAGNAAPSPS SDDMTADLWASFHSRILEYLQSITVADLLAQHRTGADNAGSPAATAQPSQARPHHARE SQLPSRNVPNSVFALGLRAG" misc_feature complement(2067136..2067540) /locus_tag="Alide2_1968" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2067145..2067540) /locus_tag="Alide2_1968" /note="Rrf2 family protein; Region: rrf2_super; TIGR00738" /db_xref="CDD:129821" gene 2068159..2068419 /locus_tag="Alide2_1969" /db_xref="GeneID:10483008" CDS 2068159..2068419 /locus_tag="Alide2_1969" /inference="similar to AA sequence:KEGG:Dtpsy_2037" /note="KEGG: dia:Dtpsy_2037 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387860.1" /db_xref="GI:330824557" /db_xref="GeneID:10483008" /translation="MQASPAHPVTQEQPQAPWGWAKYFRMPVYKPGTRVRRAGSWETV SHVSLRRNDLAVFLVGYAEPVDPMDLELEPTVFTTVRVPERY" gene complement(2068431..2069306) /locus_tag="Alide2_1970" /db_xref="GeneID:10483009" CDS complement(2068431..2069306) /locus_tag="Alide2_1970" /inference="protein motif:HAMAP:MF_00662" /note="TIGRFAM: Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase; KEGG: dia:Dtpsy_2036 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related" /codon_start=1 /transl_table=11 /product="phosphatidylserine decarboxylase proenzyme" /protein_id="YP_004387861.1" /db_xref="GI:330824558" /db_xref="InterPro:IPR003817" /db_xref="InterPro:IPR005221" /db_xref="GeneID:10483009" /translation="MSDRLAVLPQYLLPKQLLTSLAGRFASARAGGLTTAAIRRFVAR YQVDMSEAAEPDIAGYSSFNDFFTRALRPGMRPLADAAATCPVDGAVSQLGPIERDQI LQAKGHRYSTTALLGGDAQLAAQFQDGQFATIYLSPRDYHRIHMPCDGRLLRMEHVPG ALFSVNPTTARGVPGLFARNERVVCLFETLLGLMGLVLVGATIVGSVATVWHGQVNPP RTRQPRRWDYQSQQITLRQGEEMGRFLLGSTVVLLFQNGAVEFNPDWAAAHPVRLGEA MAQRPGAWTNSSAPG" misc_feature complement(2068458..2069306) /locus_tag="Alide2_1970" /note="Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656" /db_xref="CDD:194662" gene 2069514..2070692 /locus_tag="Alide2_1971" /db_xref="GeneID:10483010" CDS 2069514..2070692 /locus_tag="Alide2_1971" /inference="protein motif:PFAM:PF00571" /note="manually curated; PFAM: Cystathionine beta-synthase, core; HPP; KEGG: ajs:Ajs_1669 CBS domain-containing protein; SMART: Cystathionine beta-synthase, core" /codon_start=1 /transl_table=11 /product="CBS domain-containing membrane protein" /protein_id="YP_004387862.1" /db_xref="GI:330824559" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR007065" /db_xref="GeneID:10483010" /translation="MLTTPNPSPGPHEAEAPGPLTRRALAWLRLFMPARVRINQRERL RMVSGIVLSVAVVAVFAHWLGAASPMPWMMASLGSSAVLIISLPSSPLAQPWPVLAGS ALSYLVGVACAALVPNLPLACGLGVGLAVMLMLALRCLHPPGGAMALFAVLHPQEATL MAVVPVSFNVLVLVLAGMAFNHLTGRGYPHAQLRKLTQPKDSDSGAFTSADLDAALSH YNQVLDVSRNDLEGLLHLAGKAAFQRTLGGLRCRQIMSMPVHAVAANTPLQEAWALMR KHAIKALPVVDAQRVVVGIVTMADFMRLANLEVHEGMGQRLRSLIMGRPKRPDQVQGL MSSPVLQVQADQHVMDLVPLFSEAGHHHIPVVDEARQLVGIITQSDLVKALAAAVARS " misc_feature 2069586..2070674 /locus_tag="Alide2_1971" /note="CBS-domain-containing membrane protein [Signal transduction mechanisms]; Region: COG3448" /db_xref="CDD:33251" misc_feature 2069727..2070083 /locus_tag="Alide2_1971" /note="HPP family; Region: HPP; pfam04982" /db_xref="CDD:191148" misc_feature 2070279..2070665 /locus_tag="Alide2_1971" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is...; Region: CBS_pair_HPP_assoc; cd04600" /db_xref="CDD:73100" gene 2070940..2071200 /locus_tag="Alide2_1972" /db_xref="GeneID:10483011" CDS 2070940..2071200 /locus_tag="Alide2_1972" /inference="protein motif:TFAM:TIGR00008" /note="KEGG: dia:Dtpsy_2034 translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="YP_004387863.1" /db_xref="GI:330824560" /db_xref="GO:0003743" /db_xref="InterPro:IPR004368" /db_xref="InterPro:IPR006196" /db_xref="InterPro:IPR022967" /db_xref="GeneID:10483011" /translation="MAKEELIEMQGSVTEVLPDSRFRVTLDNGHQLIAYTGGKMRKHH IRILAGDKVSLEMSPYDLTKGRITFRHLAGRGPGPGTSSGNR" misc_feature 2070958..2071149 /locus_tag="Alide2_1972" /note="S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451" /db_xref="CDD:88417" misc_feature order(2070982..2070990,2071006..2071008,2071042..2071044, 2071051..2071056,2071069..2071080,2071129..2071131, 2071135..2071137) /locus_tag="Alide2_1972" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:88417" misc_feature order(2071042..2071044,2071054..2071056,2071147..2071149) /locus_tag="Alide2_1972" /note="predicted 30S ribosome binding site; other site" /db_xref="CDD:88417" gene 2071264..2071340 /locus_tag="Alide2_R0027" /note="tRNA-Pro1" /db_xref="GeneID:10483012" tRNA 2071264..2071340 /locus_tag="Alide2_R0027" /product="tRNA-Pro" /db_xref="GeneID:10483012" gene 2071571..2072620 /locus_tag="Alide2_1973" /db_xref="GeneID:10483013" CDS 2071571..2072620 /locus_tag="Alide2_1973" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ajs:Ajs_4119 diguanylate cyclase; SMART: Diguanylate cyclase, predicted" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004387864.1" /db_xref="GI:330824561" /db_xref="InterPro:IPR000160" /db_xref="GeneID:10483013" /translation="MTVMAALLMLCCIAAMQLVAAAGLTKAGPVHWLSLVSAAGLVVV YVLIRSGYSQRWEDPALTLFQISSSILCTAVAYVIMGAARGIVLPILAVILFFGMFGL TPRQMLAVLFYGSMVFGIALAIAQWSPEYGGQPLALTVAYMVMIIVVLISCTFLNLRV LAARKKRNELTQAVASEHERAIRDELTGLYNRRFMLEVMHIEGARAQRSQQPLLVAQL DLDHFKVINDTHGHAVGDQALCAFVRTVTECIRPTDTLARWGGEEFVLLMANTTVENG ERLLERVRAAVQASPVVLASGAAIHLTVSVGAARLQAPQEMPVGLLRRADAALYAAKA QERNRVAWADDLIEA" sig_peptide 2071571..2071636 /locus_tag="Alide2_1973" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.722 at residue 22" misc_feature 2072117..2072518 /locus_tag="Alide2_1973" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(2072225..2072227,2072354..2072356) /locus_tag="Alide2_1973" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(2072240..2072242,2072249..2072254,2072264..2072266, 2072276..2072278,2072342..2072344,2072348..2072359) /locus_tag="Alide2_1973" /note="active site" /db_xref="CDD:143635" misc_feature order(2072330..2072332,2072414..2072416) /locus_tag="Alide2_1973" /note="I-site; other site" /db_xref="CDD:143635" gene 2072626..2073399 /locus_tag="Alide2_1974" /db_xref="GeneID:10483014" CDS 2072626..2073399 /locus_tag="Alide2_1974" /inference="protein motif:PFAM:PF07786" /note="PFAM: Protein of unknown function DUF1624; KEGG: ajs:Ajs_1672 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387865.1" /db_xref="GI:330824562" /db_xref="InterPro:IPR012429" /db_xref="GeneID:10483014" /translation="MPASSRHGERGAARYDLLDAWRGLAMLWMTVFHFCFDLSHFNYW PQDFRADPFWTVQRTLIVSLFLLCAGLGQAVAWQQGVGWGRFFRRWGRIVGCALLVTA GSYAMFPRSFIYFGVLHGMALMLLVVRLTAGWGRWLWLAGLLAVASPWLAAWALEGPL AGWARYFNGHALNWLGWVSRKPFTEDYVPVFPWIGVMWWGMACGQWLLARRAPWIAGP LPRAAAPLAALGRYSLGYYMLHQPVMIGALMLWGWLGRP" misc_feature 2072665..2073351 /locus_tag="Alide2_1974" /note="Protein of unknown function (DUF1624); Region: DUF1624; cl01394" /db_xref="CDD:154378" gene complement(2073411..2073713) /locus_tag="Alide2_1975" /db_xref="GeneID:10483015" CDS complement(2073411..2073713) /locus_tag="Alide2_1975" /inference="protein motif:TFAM:TIGR00988" /note="TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_1390 integration host factor, beta subunit; SMART: Histone-like bacterial DNA-binding protein" /codon_start=1 /transl_table=11 /product="integration host factor subunit beta" /protein_id="YP_004387866.1" /db_xref="GI:330824563" /db_xref="GO:0003677" /db_xref="InterPro:IPR000119" /db_xref="InterPro:IPR005685" /db_xref="GeneID:10483015" /translation="MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIE IRGFGSFSVSHRPPRMGRNPRSGEAVHIPEKRVPHFKPGKALREAVDQRSAKTAAQ" misc_feature complement(2073447..2073710) /locus_tag="Alide2_1975" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature complement(order(2073447..2073449,2073468..2073470, 2073474..2073476,2073486..2073491,2073555..2073557, 2073570..2073575,2073582..2073596,2073606..2073611, 2073618..2073623,2073630..2073632,2073675..2073677, 2073687..2073689,2073696..2073698,2073705..2073710)) /locus_tag="Alide2_1975" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" misc_feature complement(order(2073462..2073464,2073471..2073473, 2073477..2073479,2073489..2073491,2073519..2073530, 2073537..2073539,2073543..2073548,2073552..2073554, 2073564..2073566,2073573..2073578,2073582..2073584, 2073588..2073590,2073633..2073635,2073702..2073710)) /locus_tag="Alide2_1975" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" gene complement(2073833..2075518) /locus_tag="Alide2_1976" /db_xref="GeneID:10483016" CDS complement(2073833..2075518) /locus_tag="Alide2_1976" /inference="protein motif:TFAM:TIGR00717" /note="TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA-binding domain; KEGG: dia:Dtpsy_1391 30S ribosomal protein S1; SMART: RNA-binding domain, S1" /codon_start=1 /transl_table=11 /product="50S ribosomal protein S1" /protein_id="YP_004387867.1" /db_xref="GI:330824564" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR018032" /db_xref="InterPro:IPR022967" /db_xref="GeneID:10483016" /translation="MSESFAALFEESLQRTEMRPGEVITAEVVRVEHNFVVVNAGLKS EAYVPIDEFKNDQGEIEVQVGDFVSVAIGSIENGYGDTILSRDTAKRLASWLSLEKAL ESGEFVTGTTSGKVKGGLTVLVNGIRAFLPGSLIDTRPVKDLTPYENKTMEFKVIKLD RKRNNVVLSRRAVVEASMGEERAKLMETLKEGAIVNGVVKNITEYGAFVDLGGIDGLL HITDMAWRRVRHPSEVVQAGQEITAKILKFDTEKNRVSLGLKQMGDDPWMGVSRRYPS GTRLFGKVTNIADYGAFVELEPGIEGLVHVSEMDWTNKNVAPNKLVSLGDEVEVMVLE IDEDKRRISLGMKQCRANPWQEFAQNTKRGDRVKGPIKSITDFGVFVGLAAGIDGLVH LSDLSWNEPGESAVRNYKKGQEVEAIVLAVDVDRERISLGIKQLDGDPFTTFVTVNDK GQTVSGKVKTVDARGAEIDLGNDIVGYLRASEISRDRVEDARNVLKEGDEVTAVVVNV DRKTRNIQLSIKAKDQADQQEAMAHLSAQSAKENAGTTSLGALLRAKLDNSDK" misc_feature complement(2073842..2075518) /locus_tag="Alide2_1976" /note="30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299" /db_xref="CDD:180520" misc_feature complement(2075258..2075458) /locus_tag="Alide2_1976" /note="S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687" /db_xref="CDD:88442" misc_feature complement(order(2075372..2075374,2075378..2075380, 2075408..2075410,2075432..2075434)) /locus_tag="Alide2_1976" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88442" misc_feature complement(2075006..>2075149) /locus_tag="Alide2_1976" /note="S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec2_hs2; cd04465" /db_xref="CDD:88430" misc_feature complement(order(2075123..2075125,2075129..2075131)) /locus_tag="Alide2_1976" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88430" misc_feature complement(2074745..2074948) /locus_tag="Alide2_1976" /note="S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of...; Region: S1_RPS1_repeat_ec3; cd05688" /db_xref="CDD:88443" misc_feature complement(order(2074862..2074864,2074868..2074870, 2074895..2074897,2074919..2074921)) /locus_tag="Alide2_1976" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88443" misc_feature complement(2074484..2074699) /locus_tag="Alide2_1976" /note="S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of...; Region: S1_RPS1_repeat_ec4; cd05689" /db_xref="CDD:88444" misc_feature complement(order(2074604..2074606,2074610..2074612, 2074640..2074642,2074664..2074666)) /locus_tag="Alide2_1976" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88444" misc_feature complement(2074223..2074429) /locus_tag="Alide2_1976" /note="S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of...; Region: S1_RPS1_repeat_ec5; cd05690" /db_xref="CDD:88445" misc_feature complement(order(2074343..2074345,2074349..2074351, 2074379..2074381,2074403..2074405)) /locus_tag="Alide2_1976" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88445" misc_feature complement(2073950..2074168) /locus_tag="Alide2_1976" /note="S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of...; Region: S1_RPS1_repeat_ec6; cd05691" /db_xref="CDD:88446" misc_feature complement(order(2074082..2074084,2074088..2074090, 2074118..2074120,2074142..2074144)) /locus_tag="Alide2_1976" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88446" gene complement(2075699..2077723) /locus_tag="Alide2_1977" /db_xref="GeneID:10483017" CDS complement(2075699..2077723) /locus_tag="Alide2_1977" /EC_number="2.7.4.14" /EC_number="2.5.1.19" /inference="protein motif:HAMAP:MF_00238" /note="PFAM: Enolpyruvate transferase domain; Cytidylate kinase domain; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; Cytidylate kinase; HAMAP: Cytidylate kinase; 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: dia:Dtpsy_1392 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase" /codon_start=1 /transl_table=11 /product="Cytidylate kinase" /protein_id="YP_004387868.1" /db_xref="GI:330824565" /db_xref="InterPro:IPR001986" /db_xref="InterPro:IPR003136" /db_xref="InterPro:IPR006264" /db_xref="InterPro:IPR011994" /db_xref="GeneID:10483017" /translation="MFSTAFLDLPPLASAGGTVQLPGSKSISNRVLLLAALSQGTTEV HDLLSSDDTRVMLDALRAIGCTVDEAGGGRVRITGLGGPDGTLPRSPTKLFMGNAGTA MRPLTAALALLGGEFELSGVPRMHERPIGDLVDALRQLGCRIDFLGNEGYPPLSIRHA AGLPALRLHEPIRVRGDVSSQFLTALLMALPLVAKEQDVVIEVVGELISRPYIHITLE LLARFGIAVRHEEWQRFTIPAGSRYRSPGQIHVEADASSASYFIALGAIAESPKGQKG IKILGVGQDSIQGDIRFVEAARAMGAQITGGPNWLQIERGSWPLRAIDLDCNHIPDAA MTLAVMALYAQGTTTLRNIASWRVKETDRLAAMACELAKLGASVEEGADYLRITPPAR PADWKSASIHTYDDHRVAMCFSLAAFNPAGLPVRIEDPKCVAKTFPDYFEALFLVARA DTALIPVICIDGPTASGKGTVAASVARQLGYHFLDSGALYRITALAATRAGIAIDQAG EQRIADLARGLPVRFEGERIWLGQDDVTEAIRTEEAGMNASRVSALPAVRMALVALQH GFRRLPGLVADGRDMGTVIFPAAPLKVFLTASVECRAERRHKQLISKGISANIFDLRA QLEARDARDQSRAVAPLKPAQDALLLESSALTVEQAVAQVLDWWQARQPF" misc_feature complement(2075702..2077723) /locus_tag="Alide2_1977" /note="bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional; Region: PRK11860" /db_xref="CDD:183342" misc_feature complement(2076392..2077675) /locus_tag="Alide2_1977" /note="EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-...; Region: EPSP_synthase; cd01556" /db_xref="CDD:30129" misc_feature complement(order(2076962..2076973,2077652..2077663)) /locus_tag="Alide2_1977" /note="hinge; other site" /db_xref="CDD:30129" misc_feature complement(order(2076419..2076421,2076500..2076505, 2076635..2076637,2076644..2076649,2076659..2076661, 2076728..2076730,2077088..2077090,2077097..2077099, 2077181..2077189,2077340..2077342,2077421..2077426, 2077430..2077432,2077634..2077636,2077646..2077651)) /locus_tag="Alide2_1977" /note="active site" /db_xref="CDD:30129" misc_feature complement(2075765..2076355) /locus_tag="Alide2_1977" /note="Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020" /db_xref="CDD:73296" misc_feature complement(order(2075816..2075818,2075984..2075989, 2076050..2076052)) /locus_tag="Alide2_1977" /note="CMP-binding site; other site" /db_xref="CDD:73296" misc_feature complement(order(2075825..2075827,2075837..2075839)) /locus_tag="Alide2_1977" /note="The sites determining sugar specificity; other site" /db_xref="CDD:73296" gene complement(2077723..2078607) /locus_tag="Alide2_1978" /db_xref="GeneID:10483018" CDS complement(2077723..2078607) /locus_tag="Alide2_1978" /EC_number="1.3.1.12" /inference="protein motif:PRIAM:1.3.1.12" /note="KEGG: dia:Dtpsy_1393 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase" /codon_start=1 /transl_table=11 /product="Prephenate dehydrogenase" /protein_id="YP_004387869.1" /db_xref="GI:330824566" /db_xref="InterPro:IPR003099" /db_xref="GeneID:10483018" /translation="MFEQLGLIGCGLMGGSFALAMKKAGLVQRVVGYSKSPSTTERAR QLGVIDVEAPSALLAAAGADIVLLAVPVAATEATLKAIKHLVTPQMLVMDVGSTKADV VKAARSALQGQLGSFVPAHPITGREVSGVEHADAGLYHGRQVILTPTERTLTAQLRRA EDLWTQLGARVSSMSPESHDAAFAAVSHLPHMLAFAMLSSINAQPNANELLALAGPGF RDFTRIAASDPKMWRDILRANRDEVLAQSRLFKQALQGLEDAMQADSDQPLEDLITLA SHTRAHWRMGAQRGHKDA" misc_feature complement(2077765..2078607) /locus_tag="Alide2_1978" /note="cyclohexadienyl dehydrogenase; Validated; Region: PRK07502" /db_xref="CDD:181004" misc_feature complement(2077768..2078598) /locus_tag="Alide2_1978" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(2078618..2079718) /locus_tag="Alide2_1979" /db_xref="GeneID:10483019" CDS complement(2078618..2079718) /locus_tag="Alide2_1979" /inference="protein motif:TFAM:TIGR01807" /note="TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; KEGG: dia:Dtpsy_1394 chorismate mutase; SMART: Chorismate mutase" /codon_start=1 /transl_table=11 /product="chorismate mutase" /protein_id="YP_004387870.1" /db_xref="GI:330824567" /db_xref="GO:0004106" /db_xref="InterPro:IPR001086" /db_xref="InterPro:IPR002701" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR010957" /db_xref="InterPro:IPR020822" /db_xref="GeneID:10483019" /translation="MSTTPQASPALADLRVQIDSLDHQLLQLVNQRARVAEQVGELKK REGTPFFRPDRVAQVIEKIQGANPGPLKNAHVAAIWREIMSACLALESPQRVAVLGPE GTFCEQAAIEYFGGAADLMYCNSFDEVFHATAAGSAQYGVVGVENSNEGVVTRSLDMF LHTPCHVVGEVSLLIRHNLLRSVNSAEGIEAVLAHPQALAQCHAWLAKHLPHAERRPV SSNAEGARLAATNPAWAGISSERAAQQYGLHVVAHAIQDDAYNRTRFAIICLPHTLAT PAPTGRDCTSLIISVPNRPGAVHDLLVPLKKHGVSMTRFESRPARTGQWEYYFYIDLE GHPAEANVAAALAELQQLCAFYKLLGTYPVAA" misc_feature complement(2079467..2079688) /locus_tag="Alide2_1979" /note="Chorismate mutase type II; Region: CM_2; cl00693" /db_xref="CDD:186149" misc_feature complement(2078624..2079445) /locus_tag="Alide2_1979" /note="Prephenate dehydratase [Amino acid transport and metabolism]; Region: PheA; COG0077" /db_xref="CDD:30426" misc_feature complement(2078915..2079433) /locus_tag="Alide2_1979" /note="Prephenate dehydratase; Region: PDT; pfam00800" /db_xref="CDD:144409" misc_feature complement(2078630..2078866) /locus_tag="Alide2_1979" /note="C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905" /db_xref="CDD:153177" misc_feature complement(order(2078762..2078773,2078822..2078833)) /locus_tag="Alide2_1979" /note="putative L-Phe binding site [chemical binding]; other site" /db_xref="CDD:153177" gene complement(2079837..2080946) /locus_tag="Alide2_1980" /db_xref="GeneID:10483020" CDS complement(2079837..2080946) /locus_tag="Alide2_1980" /EC_number="2.6.1.52" /inference="protein motif:HAMAP:MF_00160" /note="PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Phosphoserine aminotransferase, subgroup; HAMAP: Phosphoserine aminotransferase; KEGG: dia:Dtpsy_1395 phosphoserine aminotransferase" /codon_start=1 /transl_table=11 /product="phosphoserine aminotransferase" /protein_id="YP_004387871.1" /db_xref="GI:330824568" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR003248" /db_xref="InterPro:IPR022278" /db_xref="GeneID:10483020" /translation="MNRPYNFSAGPAAIPEEVLQQAAAEMLDWHGSGMGVMEMSHRGK EFIAIYEQAEADLRELLAIPPGFRILFMQGGGIAENAIVPLNLSRAATVDFVVTGSWS QKSRKEAQKYAAEVRTAASSEEGGFTTLPDPATWQLSRGASYVHVCSNETIHGIEFQE LPDLRALGCDAPLVVDFSSHVASRPVDWSRVGLAFGGAQKNIGPAGLTLVVVREDLLG HALPICPSAFDYKIVADNQSMYNTPPTWGIYMAGLTFQWLKRQREGDATGVAAMERRN IAKAKLFYDYIDGSQFYVNKVAANCRSRMNVPFFLRDESRNEAFLAGAKERGLLQLKG HKSVGGMRASLYNAMPLAGVQALVDYMRDFERAAT" misc_feature complement(2079849..2080934) /locus_tag="Alide2_1980" /note="Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active...; Region: PSAT_like; cd00611" /db_xref="CDD:99736" misc_feature complement(order(2080218..2080226,2080332..2080334, 2080611..2080616,2080623..2080625,2080716..2080718, 2080725..2080730,2080905..2080907,2080911..2080916, 2080929..2080931)) /locus_tag="Alide2_1980" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99736" misc_feature complement(order(2079942..2079944,2080347..2080352, 2080419..2080421,2080491..2080493,2080644..2080646, 2080716..2080721,2080920..2080922)) /locus_tag="Alide2_1980" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:99736" misc_feature complement(order(2080347..2080352,2080413..2080415, 2080419..2080421,2080491..2080493,2080644..2080646, 2080716..2080724)) /locus_tag="Alide2_1980" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99736" misc_feature complement(2080347..2080349) /locus_tag="Alide2_1980" /note="catalytic residue [active]" /db_xref="CDD:99736" gene complement(2081013..2083703) /locus_tag="Alide2_1981" /db_xref="GeneID:10483021" CDS complement(2081013..2083703) /locus_tag="Alide2_1981" /EC_number="5.99.1.3" /inference="protein motif:TFAM:TIGR01063" /note="SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: ajs:Ajs_2464 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit A" /protein_id="YP_004387872.1" /db_xref="GI:330824569" /db_xref="GO:0003677" /db_xref="GO:0003918" /db_xref="GO:0005524" /db_xref="InterPro:IPR002205" /db_xref="InterPro:IPR005743" /db_xref="InterPro:IPR006691" /db_xref="GeneID:10483021" /translation="MVLHLKWLFPAVSTAVVMTQFAKETLPISLEEEMRRSYLDYAMS VIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAV YDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKIAHEMLADIDKETV DFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRNP ESSIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAI IVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVL NNLYKQTQLQDTFGMNMVALVDGQPKLCNLKELIEVFLQHRREVVTRRTVFELRKARE RGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTREDGGV VNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKDVMA VIENLLDILAKPARVSTIIGEELSALRQEFGQTRLGARRSTIEHSAQDLSTEDLITPT DMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSN RGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRYVFMA TSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSDSGKAVRFD ENDVRPMGRNARGVKGMQLEDGQSVIAMLVAEDENQSVLTATENGYGKRTSITEYTRH GRGTKGMIAIQQSERNGRVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGV TLISLDEGAKLSGLQRIVENDANTAEADGADTAPAADDPH" misc_feature complement(2081073..2083640) /locus_tag="Alide2_1981" /note="DNA gyrase subunit A; Validated; Region: PRK05560" /db_xref="CDD:180128" misc_feature complement(2082102..2083565) /locus_tag="Alide2_1981" /note="DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in...; Region: TOP4c; cd00187" /db_xref="CDD:29149" misc_feature complement(order(2083176..2083178,2083185..2083256, 2083260..2083316,2083320..2083469,2083482..2083565)) /locus_tag="Alide2_1981" /note="CAP-like domain; other site" /db_xref="CDD:29149" misc_feature complement(2083287..2083289) /locus_tag="Alide2_1981" /note="Active site [active]" /db_xref="CDD:29149" misc_feature complement(order(2082213..2082263,2082429..2082434, 2082465..2082476,2082483..2082491)) /locus_tag="Alide2_1981" /note="primary dimer interface [polypeptide binding]; other site" /db_xref="CDD:29149" misc_feature complement(2081862..2082005) /locus_tag="Alide2_1981" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(2081724..2081855) /locus_tag="Alide2_1981" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(2081538..2081672) /locus_tag="Alide2_1981" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(2081388..2081531) /locus_tag="Alide2_1981" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(2081232..2081378) /locus_tag="Alide2_1981" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(2081085..2081225) /locus_tag="Alide2_1981" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" gene 2083880..2084539 /locus_tag="Alide2_1982" /db_xref="GeneID:10483022" CDS 2083880..2084539 /locus_tag="Alide2_1982" /inference="protein motif:PFAM:PF00691" /note="PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_1397 OmpA/MotB domain protein" /codon_start=1 /transl_table=11 /product="OmpA/MotB domain-containing protein" /protein_id="YP_004387873.1" /db_xref="GI:330824570" /db_xref="InterPro:IPR006665" /db_xref="GeneID:10483022" /translation="MKKLNKLAMLLASAVIATSAGAQVKAADGGKVIDNWQNGSGELV WKNGTNELCWRDANWTPATAAEGCDGALVKAAAAPAPAPAPAPVAAPPAAPKPAPAVA SKVTYAADAFFDFDKSVLKPEGKAKLDDLVSKVKGINLEVIIAVGHTDSIGTDAYNQK LSVRRAEAVKAYLVSKGIEKNRVYTEGKGEKQPIADNKTKEGRAKNRRVEIEVVGTRT N" sig_peptide 2083880..2083948 /locus_tag="Alide2_1982" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.764 at residue 23" misc_feature 2084213..2084518 /locus_tag="Alide2_1982" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature order(2084222..2084227,2084324..2084329,2084336..2084338, 2084348..2084353,2084360..2084362,2084486..2084488, 2084498..2084500) /locus_tag="Alide2_1982" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene 2084619..2085332 /locus_tag="Alide2_1983" /db_xref="GeneID:10483023" CDS 2084619..2085332 /locus_tag="Alide2_1983" /EC_number="2.1.1.64" /inference="protein motif:TFAM:TIGR01983" /note="TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; KEGG: dia:Dtpsy_1398 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11" /codon_start=1 /transl_table=11 /product="ubiquinone biosynthesis O-methyltransferase" /protein_id="YP_004387874.1" /db_xref="GI:330824571" /db_xref="GO:0008425" /db_xref="InterPro:IPR010233" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10483023" /translation="MNEFVNADPAELAKFSELAHRWWDPDSEFRPLHQINPLRLEWIN QLSPLEGQKALDVGCGGGILSDSMARKGAEVTGIDLASKALRVARLHALEAQTPRVQY REISVEELAQESPGSFDTVTCMEMLEHVPDPQSVVTACAHLVKPGGWVFFSTINRNAK AFALAIVGAEYLLKMLPQGTHEYAKFIRPSELAGACRNAGLDVLQVRGMQYNPLTGRY WLSGDTSVNYMFAARRLST" misc_feature 2084634..2085320 /locus_tag="Alide2_1983" /note="bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional; Region: PRK05134" /db_xref="CDD:179944" misc_feature 2084775..2085077 /locus_tag="Alide2_1983" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2084787..2084807,2084853..2084858,2084931..2084939, 2084988..2084990) /locus_tag="Alide2_1983" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 2085329..2086006 /locus_tag="Alide2_1984" /db_xref="GeneID:10483024" CDS 2085329..2086006 /locus_tag="Alide2_1984" /EC_number="3.1.3.18" /inference="protein motif:TFAM:TIGR01449" /note="TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: ajs:Ajs_2461 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="YP_004387875.1" /db_xref="GI:330824572" /db_xref="GO:0008967" /db_xref="GO:0016787" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006346" /db_xref="InterPro:IPR006402" /db_xref="InterPro:IPR006439" /db_xref="GeneID:10483024" /translation="MKTNPFRAARAVLFDLDGTLIDSAPDLGAAADRLRTDRGLQPLP LQAYRPMAGAGARGMLEVAFGIAPDHPDFPGLKDEFLANYERCIHDRTSVFDGVPELV DALTQRSLKWGVVTNKVTRFTSLIAQRVALFDSAGVIVSGDSTPYSKPHPAPLLEAVF RLGLAAHECIYVGDDARDIVAGRAAGMSTVAALYGYLGSGALPQQWGADAMIETPMDL LNLLGLD" misc_feature 2085356..2085997 /locus_tag="Alide2_1984" /note="Predicted phosphatases [General function prediction only]; Region: Gph; COG0546" /db_xref="CDD:30892" misc_feature 2085596..2085901 /locus_tag="Alide2_1984" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature 2085674..2085676 /locus_tag="Alide2_1984" /note="motif II; other site" /db_xref="CDD:119389" gene 2086019..2086395 /gene="ssrA" /locus_tag="Alide2_R0028" /db_xref="GeneID:10483025" tmRNA 2086019..2086395 /gene="ssrA" /locus_tag="Alide2_R0028" /note="tmRNA as predicted by Rfam (RF00023), score 196.22" /db_xref="GeneID:10483025" gene complement(2086706..2087590) /locus_tag="Alide2_1985" /db_xref="GeneID:10483026" CDS complement(2086706..2087590) /locus_tag="Alide2_1985" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bvi:Bcep1808_7210 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387876.1" /db_xref="GI:330824573" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10483026" /translation="MIDLERVATFIAVVKCGGFREAAKQTGLSQPTVTQHIKRLEQSL QARLIDRATMPQSLTLEGKIFFPYAEQLLRTSHKATAALHNKSLVVGASSNIGIYLLQ PYIKALQDKLANKIDVRIGKNIEIAALLETLEVDVAVMEWWDSRPGFVSTVWRRERMV VIVRPGHPWAAESTIPLKWLKSQNLLGGEAATGTGRLLQQYAGADSAEFTVGMQLGST EAVKHAVHAGLGISLVMESAVKHEQASGWLHAIPIEEDVYKDLYLVHRSETSLSGPVA SLADLILHSPDLGSIEYK" misc_feature complement(2086739..2087587) /locus_tag="Alide2_1985" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(2087402..2087581) /locus_tag="Alide2_1985" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2086745..2087332) /locus_tag="Alide2_1985" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(2086910..2086915,2086919..2086924, 2086940..2086957,2087231..2087248,2087252..2087254, 2087264..2087266,2087273..2087278,2087282..2087287)) /locus_tag="Alide2_1985" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(2087587..2088597) /locus_tag="Alide2_1986" /db_xref="GeneID:10483027" CDS complement(2087587..2088597) /locus_tag="Alide2_1986" /EC_number="1.20.1.1" /inference="protein motif:PRIAM:1.20.1.1" /note="KEGG: bvi:Bcep1808_7212 phosphonate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain" /codon_start=1 /transl_table=11 /product="phosphonate dehydrogenase" /protein_id="YP_004387877.1" /db_xref="GI:330824574" /db_xref="InterPro:IPR006139" /db_xref="InterPro:IPR006140" /db_xref="GeneID:10483027" /translation="MKPKVVLTHWVHPEIIELLSASADVIPNTTRETLPRSEVIARAK DADALMAFMPDSIDSAFLEECPKLRVIGAALKGYDNFDVNACTRHGVWLTIVPDLLTI PTAELTIGLLLGLTRHMLEGDRQIRSGHFQGWRPTLYGSGLTGKTLGIIGMGAVGRAI AQRLAGFEMNLLYCDPIPLNAEQEKAWHVQRVTLDELLEKCDYVVPMVPMAAETLHLI DATALAKMKTGSYLINACRGSVVDENAVIAALASGKLAGYAADVFEMEEWIRADRPQA IPKALLDNTAQTFFTPHLGSAVKEVRLEIERQAAMNIIQALAGEKPMGAINQPYPGVK AA" misc_feature complement(2087617..2088597) /locus_tag="Alide2_1986" /note="Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052" /db_xref="CDD:31252" misc_feature complement(2087713..2088273) /locus_tag="Alide2_1986" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(2088622..2089419) /locus_tag="Alide2_1987" /db_xref="GeneID:10483028" CDS complement(2088622..2089419) /locus_tag="Alide2_1987" /inference="protein motif:TFAM:TIGR01097" /note="KEGG: mms:mma_3042 phosphonate ABC-type transport system permease protein; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter inner membrane subunit" /protein_id="YP_004387878.1" /db_xref="GI:330824575" /db_xref="GO:0015604" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR005769" /db_xref="GeneID:10483028" /translation="MQADFGLILAERQRVWNRTILQFAVVLAIVIGCWYYVGLFDAER LKDGMPSLVKIAGEMFPPNFSQAGTWVKPVLDTLAMSIAGTAIAVLLSIPLGVLAARN TSPHPLVYQATRGLLNALRSIPELIMGILFVAAVGFGALPGVLALGLHSVGMIAKFFS ESIEHADPAPVEAAHAAGCTPLQVIFHGIFPQVLPQMADTAIYRWEYNFRASTVMGMV GAGGIGFELMGSLRIMQYQDVSAILLVILGMVTLVDAFSSFLRRKFK" misc_feature complement(2088628..2089386) /locus_tag="Alide2_1987" /note="phosphonate ABC transporter, permease protein PhnE; Region: PhnE; TIGR01097" /db_xref="CDD:188108" misc_feature complement(2088661..2089191) /locus_tag="Alide2_1987" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(2088661..2088663,2088670..2088675, 2088682..2088687,2088691..2088696,2088703..2088708, 2088736..2088741,2088769..2088774,2088781..2088792, 2088811..2088813,2088820..2088825,2088865..2088867, 2088916..2088918,2088925..2088930,2088940..2088942, 2088946..2088951,2088958..2088960,2088964..2088966, 2088970..2088975,2089021..2089023,2089027..2089032, 2089039..2089068,2089072..2089083,2089120..2089122, 2089135..2089140,2089147..2089152)) /locus_tag="Alide2_1987" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2088775..2088792,2089021..2089065)) /locus_tag="Alide2_1987" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(2088706..2088708,2088736..2088738, 2088745..2088747,2088772..2088774,2088988..2088990, 2089021..2089023)) /locus_tag="Alide2_1987" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(2088844..2088846,2088856..2088861, 2088877..2088915)) /locus_tag="Alide2_1987" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(2089432..2090292) /locus_tag="Alide2_1988" /db_xref="GeneID:10483029" CDS complement(2089432..2090292) /locus_tag="Alide2_1988" /inference="protein motif:TFAM:TIGR01098" /note="TIGRFAM: Phosphonate-binding periplasmic protein; KEGG: mms:mma_3041 phosphonate ABC-type transport system substrate-binding protein" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter periplasmic phosphonate-binding protein" /protein_id="YP_004387879.1" /db_xref="GI:330824576" /db_xref="GO:0015604" /db_xref="InterPro:IPR005770" /db_xref="GeneID:10483029" /translation="MKKLASALMSVLLAAVCSIGHASSNPDPETLKVALLPDENASTV IKYNKPLEIYLEKELGKKIELVVTTDYSSMIEAMRHGRIDMAYFGPLSYVLAKQKSDI EPFAAMKQKGGTTYQSVLIANTGAGIAKISDIVNKNVAYGDKASTSSHLIPKSILAEN GLKAGENYREHFAGAHDAVAMAVQNGHAQAGGLSKPIFESLVQRGLVDPNKVKVLAES KPYPQYPWTMRSNLKPELKEKIRAAFLNLKDPEVLKPFKADGFGPISDKDYDVVRSLG TLLKLDLSKF" sig_peptide complement(2090224..2090292) /locus_tag="Alide2_1988" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.941 at residue 23" misc_feature complement(2089552..2090244) /locus_tag="Alide2_1988" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(2089486..2090196) /locus_tag="Alide2_1988" /note="ABC transporter, phosphonate, periplasmic substrate-binding protein; Region: Phosphonate-bd; pfam12974" /db_xref="CDD:193447" gene complement(2090316..2091113) /locus_tag="Alide2_1989" /db_xref="GeneID:10483030" CDS complement(2090316..2091113) /locus_tag="Alide2_1989" /EC_number="3.6.3.28" /inference="protein motif:TFAM:TIGR02315" /note="SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, phosphonate import, PhnC; KEGG: mms:mma_3040 phosphonate ABC-type transport system ATP-binding protein; PFAM: ABC transporter-like" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter ATPase" /protein_id="YP_004387880.1" /db_xref="GI:330824577" /db_xref="GO:0005524" /db_xref="GO:0015416" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR012693" /db_xref="GeneID:10483030" /translation="MIELQNVSVSYGDAIALYPTTLKLHQGQFTVLLGSSGAGKSTLL RCINSLHASQRGATIVAGLGNLANSRALRMHRRQTGMVFQQHQLIGRLTALQNVSMGR MGYHTALRSLFPLPAKDQSICLQSLDRVGLLHKALSRVDALSGGQQQRIGIARALAQQ PKLVLADEPVASLDPATAERVLSLLHRICKEDGISAVVSLHQVDLAQRYADRIIGLSH GRVIFDAAPQTLDQASYDTLYEQVPRSSLSVPQDAREERLIDTSFPM" misc_feature complement(2090397..2091113) /locus_tag="Alide2_1989" /note="phosphonate ABC transporter, ATP-binding protein; Region: ABC_phnC; TIGR02315" /db_xref="CDD:131368" misc_feature complement(2090397..2091110) /locus_tag="Alide2_1989" /note="ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all...; Region: ABC_PhnC_transporter; cd03256" /db_xref="CDD:73015" misc_feature complement(2090991..2091014) /locus_tag="Alide2_1989" /note="Walker A/P-loop; other site" /db_xref="CDD:73015" misc_feature complement(order(2090511..2090513,2090610..2090615, 2090862..2090864,2090988..2090996,2091000..2091005)) /locus_tag="Alide2_1989" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73015" misc_feature complement(2090862..2090873) /locus_tag="Alide2_1989" /note="Q-loop/lid; other site" /db_xref="CDD:73015" misc_feature complement(2090658..2090687) /locus_tag="Alide2_1989" /note="ABC transporter signature motif; other site" /db_xref="CDD:73015" misc_feature complement(2090610..2090627) /locus_tag="Alide2_1989" /note="Walker B; other site" /db_xref="CDD:73015" misc_feature complement(2090592..2090603) /locus_tag="Alide2_1989" /note="D-loop; other site" /db_xref="CDD:73015" misc_feature complement(2090505..2090525) /locus_tag="Alide2_1989" /note="H-loop/switch region; other site" /db_xref="CDD:73015" gene 2091367..2092086 /locus_tag="Alide2_1990" /db_xref="GeneID:10483031" CDS 2091367..2092086 /locus_tag="Alide2_1990" /inference="protein motif:PFAM:PF01936" /note="PFAM: Domain of unknown function DUF88; KEGG: cvi:CV_0373 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387881.1" /db_xref="GI:330824578" /db_xref="InterPro:IPR021139" /db_xref="GeneID:10483031" /translation="MAQDALRLAVLIDADNASAAVIKELLEEVAKYGVATVKRSYGDW TTQNLVGWKDHLHRHAIQPMQQFAYTKGKNSTDSACIIDAMDLLYGGNVDGFCLVSSD SDFTRLATRLREAGKVVYGFGERKTPDAFIAACDKFVFVEVLKQPATGVDPGLPVQVK DVPPLHGLLSHAVKETQRDTGWSSLSAVGSFISKNHASFDPRNYGFSKLSDLVRKQHH YLEVKETTDAAGFNHLHIKLK" misc_feature 2091382..2091786 /locus_tag="Alide2_1990" /note="LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback...; Region: LabA_like; cd06167" /db_xref="CDD:100118" misc_feature order(2091403..2091405,2091412..2091414,2091595..2091597, 2091664..2091666,2091670..2091672,2091676..2091678) /locus_tag="Alide2_1990" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:100118" misc_feature 2091859..2092041 /locus_tag="Alide2_1990" /note="LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7; Region: LOTUS; cl14879" /db_xref="CDD:196840" gene complement(2092184..2092663) /locus_tag="Alide2_1991" /db_xref="GeneID:10483032" CDS complement(2092184..2092663) /locus_tag="Alide2_1991" /inference="similar to AA sequence:KEGG:RPSI07_0201" /note="KEGG: rsl:RPSI07_0201 putative bacteriophage-related protein" /codon_start=1 /transl_table=11 /product="putative bacteriophage-like protein" /protein_id="YP_004387882.1" /db_xref="GI:330824579" /db_xref="GeneID:10483032" /translation="MSKKHRGRFKGDPVTYQLPSPAGGVQLETFVPWTLVKRGLKKQV ITPLDAPQEFLSEATREREARSAAQDTALMRALGLAHHWQRLLDEQRAASVAEIAEAE GMDVTQVRRVMRLTLLAPEVVERLVGSPDAVLEKVMRRPLPNGWAAQKLVLHDTVQS" gene complement(2092660..2093031) /locus_tag="Alide2_1992" /db_xref="GeneID:10483033" CDS complement(2092660..2093031) /locus_tag="Alide2_1992" /inference="similar to AA sequence:KEGG:RPSI07_0202" /note="KEGG: rsl:RPSI07_0202 putative bacteriophage-related protein" /codon_start=1 /transl_table=11 /product="putative bacteriophage-like protein" /protein_id="YP_004387883.1" /db_xref="GI:330824580" /db_xref="GeneID:10483033" /translation="MNDTLETFVPLTFRRRGARRVAADDRHVHDVTLLEGVARGFYWQ HLVDTGEMKSGSEIARAEGLHPSVTNELMRLSLLAPDILELLMAGRQPRRMNLIWFQR NPLPVDWEAQRQIVKRFEEDA" gene complement(2093031..2094410) /locus_tag="Alide2_1993" /db_xref="GeneID:10483034" CDS complement(2093031..2094410) /locus_tag="Alide2_1993" /inference="protein motif:PFAM:PF00239" /note="KEGG: nde:NIDE0070 putative site-specific recombinase, resolvase family (phage related); PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal" /codon_start=1 /transl_table=11 /product="resolvase domain-containing protein" /protein_id="YP_004387884.1" /db_xref="GI:330824581" /db_xref="GO:0000150" /db_xref="GO:0003677" /db_xref="InterPro:IPR006119" /db_xref="InterPro:IPR011109" /db_xref="GeneID:10483034" /translation="MSEIASTKARKRCAVYCRVSSDERLDQEFNSIDAQKEAGHAYVA SQRSEGWIPVADDYDDPGFSGGNTERPGLKRLMADIERGQIDIVVVYKIDRLTRSLAD FSKMVEVFERHGVSFVSVTQQFNTTTSMGRLMLNVLLSFAQFEREVTGERIRDKIAAA KRKGMWMGGVPPLGYDVDNRLLIINEAEATVVRRIFEEMLTIGSPTQIAVNLTADGIT TKAWTTQEGQTRSGTRIDKKYLHKLLRNRIYLGELSHKGNWYPGAHPPIIELELWDKV HAVLARDGHARSVETKIRSRTDALLRGLLYAPSGERMYPTYSRKNGRKYHYYVSKSES RFGAPGKSYERLPAPEIEAAVVAQIRTVLTSPESIASVVRHIQRNGGQVDEATTVMAM GRLNDVWDQLFPVERHRIANLMIERIDLVHIGEVQGIKVKWRELGWDALIGEFAPRGI GAELVEVEA" misc_feature complement(2093685..2094380) /locus_tag="Alide2_1993" /note="Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961" /db_xref="CDD:32144" misc_feature complement(2093946..2094365) /locus_tag="Alide2_1993" /note="Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768" /db_xref="CDD:58117" misc_feature complement(order(2094117..2094119,2094126..2094131, 2094351..2094353,2094357..2094359)) /locus_tag="Alide2_1993" /note="catalytic residues [active]" /db_xref="CDD:58117" misc_feature complement(2094351..2094353) /locus_tag="Alide2_1993" /note="catalytic nucleophile [active]" /db_xref="CDD:58117" misc_feature complement(order(2093976..2093978,2093988..2093993, 2093997..2094002,2094132..2094134)) /locus_tag="Alide2_1993" /note="Presynaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(2093970..2093972,2093979..2093981, 2093988..2093993,2094000..2094005,2094012..2094014, 2094096..2094101,2094114..2094116)) /locus_tag="Alide2_1993" /note="Synaptic Antiparallel dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(2093955..2093957,2093967..2093969, 2093976..2093978,2093988..2093990,2093997..2094002, 2094009..2094014,2094039..2094047)) /locus_tag="Alide2_1993" /note="Synaptic Flat tetramer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(2093955..2093957,2093967..2093969, 2093976..2093978,2093988..2093990,2093997..2093999, 2094045..2094047)) /locus_tag="Alide2_1993" /note="Synaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(2093952..2093957,2093973..2093975)) /locus_tag="Alide2_1993" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:58117" misc_feature complement(2093565..2093855) /locus_tag="Alide2_1993" /note="Recombinase; Region: Recombinase; pfam07508" /db_xref="CDD:191763" gene complement(2094407..2094856) /locus_tag="Alide2_1994" /db_xref="GeneID:10483035" CDS complement(2094407..2094856) /locus_tag="Alide2_1994" /inference="similar to AA sequence:KEGG:Mfla_1156" /note="KEGG: mfa:Mfla_1156 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387885.1" /db_xref="GI:330824582" /db_xref="GeneID:10483035" /translation="MNEKQASVAARIAELACLPMSELWTVWDRYFPRRPDYPNRTHVE SRLAYKLQEEAFGGLAPETKQRLEAIGAKHSKIKLRAKPREFDFAPGTILLREWGERE HRVTVTAEGLFEYQGRNFKSLTAVARHITGAHWSGPLFFGLSKGGAR" misc_feature complement(2094425..2094835) /locus_tag="Alide2_1994" /note="Protein of unknown function (DUF2924); Region: DUF2924; pfam11149" /db_xref="CDD:192712" gene complement(2094856..2095047) /locus_tag="Alide2_1995" /db_xref="GeneID:10483036" CDS complement(2094856..2095047) /locus_tag="Alide2_1995" /inference="similar to AA sequence:KEGG:Mfla_1157" /note="KEGG: mfa:Mfla_1157 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387886.1" /db_xref="GI:330824583" /db_xref="GeneID:10483036" /translation="MKNLELASPSEMSASARAGEIAAILAAAIVRTLVADEPKQRAVG LGFLPDQRVHTTPYQEEKL" gene 2095228..2095506 /locus_tag="Alide2_1996" /db_xref="GeneID:10483037" CDS 2095228..2095506 /locus_tag="Alide2_1996" /inference="protein motif:PFAM:PF01381" /note="KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004387887.1" /db_xref="GI:330824584" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10483037" /translation="MPFGAFIRKKREEKGIQMNDFARQLEISPAYWSRIERDMEKPPK DELIRKAAEILGISADDAFVEASRLPPDIRDDVGSLVRMYRRNVTEKK" misc_feature 2095237..2095410 /locus_tag="Alide2_1996" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(2095249..2095251,2095261..2095263,2095336..2095338) /locus_tag="Alide2_1996" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(2095258..2095260,2095333..2095335) /locus_tag="Alide2_1996" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(2095279..2095284,2095315..2095317,2095324..2095326, 2095336..2095341) /locus_tag="Alide2_1996" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene 2095507..2096319 /locus_tag="Alide2_1997" /db_xref="GeneID:10483038" CDS 2095507..2096319 /locus_tag="Alide2_1997" /inference="similar to AA sequence:KEGG:NIDE0076" /note="KEGG: nde:NIDE0076 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387888.1" /db_xref="GI:330824585" /db_xref="GeneID:10483038" /translation="MAVLTLDYRCCDRKRPLYIKHIEVERIAATARQQLVADSIDAVS FDALRQISGMKINGIDFALEVSTDYAVHDEQGNHVFGVCEFDPAMPDAAMVSISPVGE SLSELLALSTLAHELGHAVFDAPGWVVQGSKGPGLFDDIEPTMQRAYRTTTPDSDHLS KSLSAKPATEEHFAELRANEFMGSLLVPRQRIIAAVEELALQHDITIHRHPSTDPDHP GTALRIKANGDLGVLEMDRFEKALATRFGVNPRFIQVRLNRYGLTTQEATMR" gene 2096420..2097844 /locus_tag="Alide2_1998" /db_xref="GeneID:10483039" CDS 2096420..2097844 /locus_tag="Alide2_1998" /inference="similar to AA sequence:KEGG:NIDE0077" /note="KEGG: nde:NIDE0077 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387889.1" /db_xref="GI:330824586" /db_xref="GeneID:10483039" /translation="MPADQASTTKKSTKLATSQPAAKRAREHRSDEGANILPNAENFV SLVRKVARPGLLVDLLERASATALPELKALAEAAKGKLPVESRQAFFHAVGKLAGTAQ YSIECAAERVMLLDDDYGAQAVLSLLNEERADDAAVLAAPSDRYSRALYLHLLQDFPA QGARRDERFDQAEHLQVMHRQWKSDHYSSHYLGPKGVVPKTGVDVQEVLRTRIAELFP KVPKDQILIEQFTRRDLSCEQGDDDDCEAGQSALLHTLTATFNGKTATFQQVANGHVV DHEEPAAMSARFSWEPETGSLSVFCEEREARRELATVFRDVALAHEGQIEDMPMRQFD LLGFATSKMLDRLKRDRVAGIDDISILQITVAKPFEQTSEYGGRDVVRQLSSKMQITR DRRDGRNIYQVAYEDYCAEDLSQYALVQVKLVMRMSKTPHRKAHNVAVQITAPNGLND KSRTDDDRKRVQEQLIKIGVLSQF" gene 2097856..2098794 /locus_tag="Alide2_1999" /db_xref="GeneID:10483040" CDS 2097856..2098794 /locus_tag="Alide2_1999" /inference="similar to AA sequence:KEGG:NIDE0078" /note="KEGG: nde:NIDE0078 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387890.1" /db_xref="GI:330824587" /db_xref="GeneID:10483040" /translation="MTSPYLSFFLALDNLPRLDASVLADRLGRDYQQFLQRRWVVPAG HLTHVMVPFLDSEQEVEIDVDEDAGRYSYCSPLNGRTIVQPLAGIALYSIQMDCWLAD LAALIGIEERRRSSQICRTPNHLWHLGEQRIVGTHDFAPVFVARAWSRAPQDKITAVL ADTVWPRGGVVLCPRRTNASLPRDHTLRGFDEFVRLTDGADAFDTDAFDRVLRGYATN VGEPEPVQFFNGKRLKLPHMASSIELTEARAKIIKLMWGTEGSAPPVMSWKEVNGSVT VNTGFQSFDDAFGDKVAREEVIELVSRGKYRVRRNT" gene 2098880..2099137 /locus_tag="Alide2_2000" /db_xref="GeneID:10483041" CDS 2098880..2099137 /locus_tag="Alide2_2000" /inference="similar to AA sequence:KEGG:MCA2640" /note="KEGG: mca:MCA2640 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387891.1" /db_xref="GI:330824588" /db_xref="GeneID:10483041" /translation="MQTHFTNATSGLIPAKPGAPQRIALDENELAIRWGLSVKTLRRW RQEQLGPVFCKLGARVTYLISEVEAFERRVSRHSTFTRAYQ" gene 2099149..2099631 /locus_tag="Alide2_2001" /db_xref="GeneID:10483042" CDS 2099149..2099631 /locus_tag="Alide2_2001" /inference="similar to AA sequence:KEGG:mma_2689" /note="KEGG: mms:mma_2689 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387892.1" /db_xref="GI:330824589" /db_xref="GeneID:10483042" /translation="MSDLTIFPADLAAMSTAQLVALPITDFVAAERNVDEATAYLKQL RAKLDAAKLQRYGEQARSALRDSGRDFGTAHVSDGALHVKYELPKKVTWSQTILKEMA ERIAASGDKVEDYIDIKLSVSESRYTNWPTALQEQFAAARTVEEGKPSITLTLDGGAA " gene 2099628..2100476 /locus_tag="Alide2_2002" /db_xref="GeneID:10483043" CDS 2099628..2100476 /locus_tag="Alide2_2002" /inference="similar to AA sequence:KEGG:NIDE0081" /note="KEGG: nde:NIDE0081 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387893.1" /db_xref="GI:330824590" /db_xref="GeneID:10483043" /translation="MKKLPIVSAIERMAERKGVKLLMLGKSGIGKTTRLKDLDPATTL FLDIEAGDLAVADWPGDTIRPASWPESRDFFVFLAGPDKSLPPESAFSQAHYDHVIEK FGDPTQLERYQTFFLDSITQLSRQCFAWCKTQPGAVSDRSGKPDLRAAYGLLGQEMIS ALTHLQHARGKNVVFVAILDERLDDYNRKVFVPQIEGSKTSLELPGIVDEVVTLAEIK AEDGSTYRAFVTHTVNPYGFPAKDRSGRLDLLEPPHLGALIAKCAGASAVPASAATSA HIESQE" misc_feature 2099691..2100293 /locus_tag="Alide2_2002" /note="phage nucleotide-binding protein; Region: phage_P_loop; TIGR01618" /db_xref="CDD:130679" gene 2100482..2101105 /locus_tag="Alide2_2003" /db_xref="GeneID:10483044" CDS 2100482..2101105 /locus_tag="Alide2_2003" /inference="similar to AA sequence:KEGG:Dtpsy_3225" /note="KEGG: dia:Dtpsy_3225 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387894.1" /db_xref="GI:330824591" /db_xref="GeneID:10483044" /translation="MTAWNDFNDADAQQSGFDLIPKGTVVPVRMTLKPGGYDDPSQGW AGGYATESFETGSIYLAAEFVVTAGDHAKRKMWSNIGLHSKKGPTWGQMGRSFIRAAL NSARNVHPQDNSPQASSARRIQGFHELDGLEFLARVDIEKDGKGQDRNVVKVAVEPDH PDYAKLMGVPTKASGGGSSGAPAQAAPAYQAPAPQRAPVTGKPAWAQ" gene 2101117..2101971 /locus_tag="Alide2_2004" /db_xref="GeneID:10483045" CDS 2101117..2101971 /locus_tag="Alide2_2004" /inference="protein motif:PFAM:PF10546" /note="PFAM: Uncharacterised protein domain P63C; KEGG: nde:NIDE0083 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387895.1" /db_xref="GI:330824592" /db_xref="InterPro:IPR018874" /db_xref="GeneID:10483045" /translation="MNASILTASHYGVVHFGDLDCEAVVLTTGERGYVRKELAKLLGF HESHKGGRFARFLADIAPNSLSLLEKSSGPILLPSGRQTQFFPAGIIADVATSVVDAA IAGTLHRARQGIVGNCLTIMRALATTGEVALIDEATGYQHHRAPDALQELISKLLRQS CASWERRFHPDYYRAIYRLFGWKYQGHDQNPPHVVGQITLRWVYGPVLPEDLLGEIRN RKGISQKHHQWLSDQGLAHLESQIHAVTAIARSSMSYPDFKRRCEAAFAGAALQLGLL LDELEEGA" misc_feature 2101570..2101812 /locus_tag="Alide2_2004" /note="P63C domain; Region: P63C; pfam10546" /db_xref="CDD:151091" gene 2101968..2102468 /locus_tag="Alide2_2005" /db_xref="GeneID:10483046" CDS 2101968..2102468 /locus_tag="Alide2_2005" /inference="similar to AA sequence:KEGG:NIDE0084" /note="KEGG: nde:NIDE0084 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387896.1" /db_xref="GI:330824593" /db_xref="GeneID:10483046" /translation="MKCWACKRQARGYGHTDNRHGVGDPRRYPIDWVFCSRRCQDAFH ALYGNWQRAKEGRIDKTEVAMIDPSDVELAAMRHCLKAFGEAAGEIGFTKPLGDYSEA EALRVIDAIVTCWSDAMVAHHESSKFPPVRGLPPTPDPLAPNAANPFADLEDDLPWEE PKGKKP" gene 2102465..2103199 /locus_tag="Alide2_2006" /db_xref="GeneID:10483047" CDS 2102465..2103199 /locus_tag="Alide2_2006" /inference="similar to AA sequence:KEGG:Dtpsy_3223" /note="KEGG: dia:Dtpsy_3223 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387897.1" /db_xref="GI:330824594" /db_xref="GeneID:10483047" /translation="MMDFNSSSSIAGQVSALVDAGLQQARARQSERQYLGASRLGVAC ERALQFEYAKAPIDHGRDTPGRMLRIFERGHVMEDCMVAWLRDAGFDLRTRKADGEQF GFSVADGRLQGHVDGVVVGGPEGFAYPALWECKCLGNKSWSDLEKKGLAISKPIYAAQ VAIYQAYLELHEHPAIFTALNADTMGIYTELVPFDAALAQRMSDRAVKVITATEAGEL LPRAFVDPTHFECRMCAWQDRCWRTT" gene 2103196..2103441 /locus_tag="Alide2_2007" /db_xref="GeneID:10483048" CDS 2103196..2103441 /locus_tag="Alide2_2007" /inference="similar to AA sequence:KEGG:NIDE0086" /note="KEGG: nde:NIDE0086 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387898.1" /db_xref="GI:330824595" /db_xref="GeneID:10483048" /translation="MSNDTQFIGGVEPMIDAKQAAAALRLPYYWFADPQMRSKYKIPH YLMGGLVRYRPSELSAWAARSTAAQGRNGDADVEEAE" gene 2103438..2105738 /locus_tag="Alide2_2008" /db_xref="GeneID:10483049" CDS 2103438..2105738 /locus_tag="Alide2_2008" /inference="protein motif:TFAM:TIGR01613" /note="TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; KEGG: dia:Dtpsy_3221 hypothetical protein; SMART: Phage/plasmid primase, P4, C-terminal" /codon_start=1 /transl_table=11 /product="phage/plasmid primase, P4 family" /protein_id="YP_004387899.1" /db_xref="GI:330824596" /db_xref="InterPro:IPR006500" /db_xref="InterPro:IPR014818" /db_xref="GeneID:10483049" /translation="MTLDFNDIAPLPDPTRRSLGDAEREELRAELLARLESVLITLFP AGKKRRGKFLIGDVLGSPGDSLEVVLDGEKAGLWTDRATGDGGDIYALIAAHLGIDVP GDFPRVLDAAADLIGRSRSAPVRKANKKDVPVDELGPATAKWDYLDAQGHLIAVVYRY DPPGQKKQFRPWDAKRRKMAPPDPRPLYNQSGMTSTAQVVLVEGEKCAQALIDAGIVA TTAMHGANAPVEKTDWSPLSGKAVLIWPDRDKPGWEYATQAAQAILSAGAKSCHVLYP PEEAAEGWDVADAIAEGFDVATFLTHGPRLQMHDVADDVDPVVSSDESVWGTEDALAL SFTRRYHRDWRYVAGWGKWLVWDGQRWRTEDTLAATDLIRSVCRQTAVRADNPKVAAK LASAGTVGGVERLARADRRHAATTDEWDADPWLLNTPGGVVDLKTGRMRTHERADRMT KITTATPSGDCPTWRQFIDEVTGGDQELQSYLQRMVGYALTGSTQEHALFFLYGTGAN GKSVFVNTLATILRDYATNAPMDTFMETRTDRHPTDMAGLRGARFVAAIETEQGKRWA ESKLKNLTGGDKISARFMRQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFT ITVPPERRDKNLQQKLLAERDGILAWAVQGCLDWQRHGRLSPPQRVVDATEEYFEAED ALGRWLDERCVREPNAKSLTAELFNDWKQWAEASGEFVGAQRRFSDLLITRGLDKWRN GMGVRGFQGIGLKHPPTPAYTPYADN" misc_feature 2103441..2105735 /locus_tag="Alide2_2008" /note="hypothetical protein; Validated; Region: PRK07078" /db_xref="CDD:180825" misc_feature 2104029..2104244 /locus_tag="Alide2_2008" /note="TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication...; Region: TOPRIM_primases; cd01029" /db_xref="CDD:173779" misc_feature order(2104044..2104049,2104056..2104058,2104176..2104178, 2104182..2104184,2104188..2104190) /locus_tag="Alide2_2008" /note="active site" /db_xref="CDD:173779" misc_feature order(2104044..2104046,2104176..2104178) /locus_tag="Alide2_2008" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173779" misc_feature order(2104050..2104055,2104071..2104076,2104101..2104103) /locus_tag="Alide2_2008" /note="interdomain interaction site; other site" /db_xref="CDD:173779" misc_feature 2104434..2104856 /locus_tag="Alide2_2008" /note="D5 N terminal like; Region: D5_N; pfam08706" /db_xref="CDD:149685" misc_feature 2104707..2105615 /locus_tag="Alide2_2008" /note="C-terminal domain; Region: primase_Cterm; TIGR01613" /db_xref="CDD:130674" gene 2105880..2106356 /locus_tag="Alide2_2009" /db_xref="GeneID:10483050" CDS 2105880..2106356 /locus_tag="Alide2_2009" /inference="similar to AA sequence:KEGG:Dtpsy_3220" /note="KEGG: dia:Dtpsy_3220 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387900.1" /db_xref="GI:330824597" /db_xref="GeneID:10483050" /translation="MITTILALDLGTTTGWALRGSDGHITSGSERFRPQRFEGGGMRF LRFKRWLSEIKQSCDGIDCLHFEEVRRHVSTDAAHAYGGFLATLTAWCEHHQIPYQGV PVGTIKKHATGKGNAGKEDVIASVTARGHAPVDDNEADALALLHWAIQHHDDGQEV" gene 2106358..2106561 /locus_tag="Alide2_2010" /db_xref="GeneID:10483051" CDS 2106358..2106561 /locus_tag="Alide2_2010" /inference="similar to AA sequence:KEGG:mma_2698" /note="KEGG: mms:mma_2698 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387901.1" /db_xref="GI:330824598" /db_xref="GeneID:10483051" /translation="MKVPTPQYRCPLGRLQPQATDLDAIKERGWRDQHILVVNASDER LDFIEREIVRRIGERLYGGARHG" gene 2106554..2106970 /locus_tag="Alide2_2011" /db_xref="GeneID:10483052" CDS 2106554..2106970 /locus_tag="Alide2_2011" /inference="similar to AA sequence:KEGG:Smlt1883" /note="KEGG: sml:Smlt1883 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387902.1" /db_xref="GI:330824599" /db_xref="GeneID:10483052" /translation="MAEWTIEDVAARFEEAASTGRRLPPVRVQGYFNTWPVIVRKEWE TFAADEHVYRPFPPTPDAIDRMLETMRWVQWLEIEQRHLVWMRAKRYGWRDITIRFAC DRTTAWRRWQRALEIVAEKLNSEDIRAPSKIVGQAG" gene 2107316..2108731 /locus_tag="Alide2_2012" /db_xref="GeneID:10483053" CDS 2107316..2108731 /locus_tag="Alide2_2012" /inference="protein motif:PFAM:PF01555" /note="KEGG: dia:Dtpsy_3217 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease" /codon_start=1 /transl_table=11 /product="DNA methylase N-4/N-6 domain-containing protein" /protein_id="YP_004387903.1" /db_xref="GI:330824600" /db_xref="GO:0003677" /db_xref="GO:0008170" /db_xref="InterPro:IPR002941" /db_xref="InterPro:IPR003115" /db_xref="GeneID:10483053" /translation="MNTLNVEYRKVEALIPYARNPRTHAESQIAKIAASIVEYGWTNP ILVDGDNGIIAGHGRLAAARKLGLDQVPVIELAHLTVAQKRALVIADNRLALDAGWDE EMLALELAELSDAGYDLALTGFEEAEIEALLTGAVAVADDESESEADESDAADDVPEV PVMAVSRPGDVWAIGPHRLICGDATDRDVVAALMQGDAARLCFTSPPYGNQRDYTSGG IADWDGLMRGVFAHLPMAGDGQVLVNLGLIHRDNEVIPYWDAWLGWMRQQGWRRFAWY VWDQGPGMPGDWAGRFAPSFEFVFHFNRESRKPNKIVPCKHAGQESHLRADGSSTAMR GKDGEVGGWTHKGLPTQDTRIPDSVIRVMRHKGKIGQDIDHPAVFPVALPEFVIEAYT DAGDIVFEPFGGSGTTMLAAERTGRICCSVEIAPQYVDVAIKRFQQNHPGIPVTLIAT GQSFEQVAVERATTPDAEVVA" misc_feature 2107334..>2107537 /locus_tag="Alide2_2012" /note="ParB-like nuclease domain; Region: ParBc; cl02129" /db_xref="CDD:154762" misc_feature 2107802..2108695 /locus_tag="Alide2_2012" /note="DNA modification methylase [DNA replication, recombination, and repair]; Region: COG0863" /db_xref="CDD:31203" misc_feature 2107916..2108617 /locus_tag="Alide2_2012" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 2108728..2109990 /locus_tag="Alide2_2013" /db_xref="GeneID:10483054" CDS 2108728..2109990 /locus_tag="Alide2_2013" /inference="protein motif:PFAM:PF01555" /note="KEGG: dia:Dtpsy_3216 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease" /codon_start=1 /transl_table=11 /product="DNA methylase N-4/N-6 domain-containing protein" /protein_id="YP_004387904.1" /db_xref="GI:330824601" /db_xref="GO:0003677" /db_xref="GO:0008170" /db_xref="InterPro:IPR002941" /db_xref="InterPro:IPR003115" /db_xref="GeneID:10483054" /translation="MNWLADKIEQWPTAKLLPYARNARTHSEEQVAQIAASIAEFGFT NPILAGSDGIIVAGHGRLAAAQKLGLERVPVVVLDHLTPTQRRALVIADNRIAENAGW DDAMLRIELEALQLEGFDLDITGFDADALAELIAGDEPDNEGQTDEDAVPEVSETPIS RPGDIWIMGQHRLLCGDSTVAESYDHLMQGAVADMVFTDPPYNVNYANSAKDKMRGKD RAILNDNLGDAFYDFLLAALTPTVAHCRGGIYVAMSSSELDVLQAAFRAAGGKWSTFI IWAKNTFTLGRADYQRQYEPILYGWPEGATRHWCGDRDQGDVWNIKKPQKNDLHPTMK PVELVERAIRNSSRPGNVVLDPFGGSGTTLIAAEKSGRVARLIELDPKYVDVIVRRWE EFTGKQATREADGALLDQAASDSSTISQ" misc_feature 2108761..2108964 /locus_tag="Alide2_2013" /note="ParB-like nuclease domain; Region: ParBc; cl02129" /db_xref="CDD:154762" misc_feature 2108797..>2109147 /locus_tag="Alide2_2013" /note="Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]; Region: Spo0J; COG1475" /db_xref="CDD:31664" misc_feature 2109307..2109894 /locus_tag="Alide2_2013" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(2109954..2110322) /locus_tag="Alide2_2014" /db_xref="GeneID:10483055" CDS complement(2109954..2110322) /locus_tag="Alide2_2014" /inference="similar to AA sequence:KEGG:mma_2759" /note="KEGG: mms:mma_2759 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387905.1" /db_xref="GI:330824602" /db_xref="GeneID:10483055" /translation="MNTTTQIPATQNEAWGFWGTMNEHASAAWPQAMTAISDATSQPL ESVRAFLDSRHGRHFADDVQNGRYEGKALADAINAATQRWMGWTIGRQTSKQYGIPRG LPYLTGFVIHCEIVDESLAA" gene complement(2110420..2110941) /locus_tag="Alide2_2015" /db_xref="GeneID:10483056" CDS complement(2110420..2110941) /locus_tag="Alide2_2015" /inference="similar to AA sequence:KEGG:mma_2762" /note="KEGG: mms:mma_2762 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387906.1" /db_xref="GI:330824603" /db_xref="GeneID:10483056" /translation="MTTTNLTPAQHAILAKAINTSSGKIDWFPDNIKGGARKKVLDGM FNRALITNDGTDWFVAAEGYDALGMKRPDVTPPIPEVDAELEHAVATAEATWTPAPAQ AKPRTRDNSKQAEVIRMLQRPEGATIGQICTATGWQAHTVRGTFAGTFKKKLGLTIVS DKPQGGERVYRIA" misc_feature complement(2110423..2110632) /locus_tag="Alide2_2015" /note="Protein of unknown function (DUF3489); Region: DUF3489; pfam11994" /db_xref="CDD:152429" gene complement(2111037..2111243) /locus_tag="Alide2_2016" /db_xref="GeneID:10483057" CDS complement(2111037..2111243) /locus_tag="Alide2_2016" /inference="similar to AA sequence:KEGG:Dtpsy_3211" /note="KEGG: dia:Dtpsy_3211 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387907.1" /db_xref="GI:330824604" /db_xref="GeneID:10483057" /translation="MSQIDTILTLIAQKHLGIETLQTRNADSLDFHDTAVWCLKDALE AAFKAGVEFGASSPKATEGEIAKD" gene 2111350..2111895 /locus_tag="Alide2_2017" /db_xref="GeneID:10483058" CDS 2111350..2111895 /locus_tag="Alide2_2017" /inference="similar to AA sequence:KEGG:Smlt1874" /note="KEGG: sml:Smlt1874 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387908.1" /db_xref="GI:330824605" /db_xref="GeneID:10483058" /translation="MGLSIRAYARHRGVSHVAVKKAIDTGRITPLPDGTIDPDTADAQ WAQNTLQPRKAAAPEKVSPSKARVLPEREVPEPGTPPLSTGGTSLLQARTVNEVLKAQ LNKVELAHRKKELVDRAQAVAHVFKLARIERDAWLNWPARISGQMASTLGVDAHQMHV ALEAAVREHLIELGELRPRVD" gene 2111895..2113853 /locus_tag="Alide2_2018" /db_xref="GeneID:10483059" CDS 2111895..2113853 /locus_tag="Alide2_2018" /inference="protein motif:PFAM:PF05876" /note="PFAM: Phage terminase GpA; KEGG: dia:Dtpsy_3209 terminase GpA" /codon_start=1 /transl_table=11 /product="terminase GpA" /protein_id="YP_004387909.1" /db_xref="GI:330824606" /db_xref="InterPro:IPR008866" /db_xref="GeneID:10483059" /translation="MTMDYEGAQEIERAWRDGLTPDPLLTVSEWSDRHRMLSSKASAE PGRWRTSRTPYLKAIMDCLSPTSPVERVVFMKAAQLGATEMGSNWIGYVIHHAPGPMM AVWPTVEMAKRNSKQRIDPLIEESAALAELIAPARSRDSGNTILAKEFRGGVLVMTGA NSAVGLRSMPVRYLFLDEVDGYPLDVEGEGDAISLAEARTRTFARRKIFIVSTPTISG ASAIEREYEASDQRRYFVPCPHCNHPQWLRFEQLRWDRGQPETAAYICESCDTAISEH HKTWMLERGEWRSMAQGKTAGFHLSSLYSPVGWRSWRDIAAAWEAAVNKESGSAAAIK TFKNTELGETWVEEGEAPDWQRLVERREDYSVGTVPLGGLLLVGAADVQKDRIEASIW AFGRGKESWLIEHRVLMGDTARDAVWKALAAMLAENWTHASGVAMPLARFALDTGFAT QEAYAFVRACHDPRVMAVKGVPRGAALIGTPTAIDVSQGGKKLRRGIKVFTVAVGIAK LEFYNNLRKSADVGEDGSTPVFPAGFVHLPKIDAEFIQQLCAEQLITRRDRNGFPVRE WQKMRERNEALDCYVYARAAASAAGLDRFEDRHWRELERQLGVAPPPDAPPPIHNIEL NEATPSGGLAASGTRNSGRRVIRSRWLR" misc_feature 2111901..2113700 /locus_tag="Alide2_2018" /note="Caudovirales tail fibre assembly protein; Region: Caudo_TAP; cl05448" /db_xref="CDD:187922" misc_feature 2112000..2113694 /locus_tag="Alide2_2018" /note="Phage terminase large subunit (GpA); Region: Terminase_GpA; pfam05876" /db_xref="CDD:147823" gene 2113883..2114374 /locus_tag="Alide2_2019" /db_xref="GeneID:10483060" CDS 2113883..2114374 /locus_tag="Alide2_2019" /inference="similar to AA sequence:KEGG:mma_2706" /note="KEGG: mms:mma_2706 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387910.1" /db_xref="GI:330824607" /db_xref="GeneID:10483060" /translation="MSLATRIESLVIRVAQEFNDVRATAGNLASLSTTDKSSLVAAIN ELKAAVLSATAIDDNQIATSTTYSSNKIVSLLDALKADILGGADAAYDTLVEIQQLLQ NGTTGLDALLAAVNLRVRYDAAQTLTVAEQLQARTNIGAVAAVDVGNTDTDFVVIFDG ALA" misc_feature 2113883..>2114359 /locus_tag="Alide2_2019" /note="Bacteriophage capsid protein [General function prediction only]; Region: COG5511" /db_xref="CDD:35070" gene 2114374..2114766 /locus_tag="Alide2_2020" /db_xref="GeneID:10483061" CDS 2114374..2114766 /locus_tag="Alide2_2020" /inference="similar to AA sequence:KEGG:mma_2767" /note="KEGG: mms:mma_2767 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387911.1" /db_xref="GI:330824608" /db_xref="GeneID:10483061" /translation="MSLASSIAALAARIGFEVKTKIDATHPGLARVWVSFGYVGGQIV IGSAHNVASVVRTAAGRYRVHFALAMPDANYCWTALARSSSNSGQQRVAVVRASSDLK TAQYVDISCATTATSFDDSSEINLVVYR" gene 2114766..2114987 /locus_tag="Alide2_2021" /db_xref="GeneID:10483062" CDS 2114766..2114987 /locus_tag="Alide2_2021" /inference="similar to AA sequence:KEGG:RPSI07_0240" /note="KEGG: rsl:RPSI07_0240 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387912.1" /db_xref="GI:330824609" /db_xref="GeneID:10483062" /translation="MAYTEIQLQALESALAKGERRVTFADKTVEYRSVDELMAAIREV RRGMLQQAAETGLLPGAPRQIRVTTRKGF" gene 2114989..2116503 /locus_tag="Alide2_2022" /db_xref="GeneID:10483063" CDS 2114989..2116503 /locus_tag="Alide2_2022" /inference="protein motif:TFAM:TIGR01539" /note="manually curated; TIGRFAM: Phage portal protein, lambda; KEGG: dia:Dtpsy_3207 phage portal protein, lambda family; PFAM: Phage portal protein, lambda" /codon_start=1 /transl_table=11 /product="phage portal protein, lambda family" /protein_id="YP_004387913.1" /db_xref="GI:330824610" /db_xref="GO:0003677" /db_xref="InterPro:IPR006429" /db_xref="GeneID:10483063" /translation="MAWFSQTVRRLFGASPVHEAAGRGRRSLAWMPGNPGAVAAMLTT NAELRGKSRDLVRRNAWAQAGIEAFVANAVGTGIKPQSLSGDERFKAEVQALWRDWVE EADAAGQTDFYGLQALACRAMLEGGECLIRLRPRRPEDGLSVPLQLQLLEPEHLPINL NTDLPSGNVVRSGIEFDNLGRRVAYHLYRSHPEDGRLAPMSGQGGMDTVRIDAKEIIH LFRVLRPGQIRGEPWLSRALVKLNELDQYDDAELVRKKTAAMFAGFVTRANPEDNLLG EGAADADGIALAGLEPGTLQILEPGEDIKFSDPADVGGSYSEFLRTQFRAVAAAIGIT YEQLTGDLTGVNYSSIRAGLLEFRRRCEMVQHGVLVHQMCRPVWAAWMKQAVLAGALD APGFTRGGPARRRQYLAVKWIPQGWQWVDPEKEFKAMLLAIRAGLMSRSEAISANGYD AEDVDREIAADNQRADDLGLIFDSDPRYTSKDGGGSEPNRSANAPDITGSQSLP" misc_feature 2114992..2116437 /locus_tag="Alide2_2022" /note="Bacteriophage capsid protein [General function prediction only]; Region: COG5511" /db_xref="CDD:35070" gene 2116537..2117778 /locus_tag="Alide2_2023" /db_xref="GeneID:10483064" CDS 2116537..2117778 /locus_tag="Alide2_2023" /inference="protein motif:PFAM:PF01343" /note="PFAM: Peptidase S49; KEGG: dia:Dtpsy_3206 peptidase S49" /codon_start=1 /transl_table=11 /product="peptidase S49" /protein_id="YP_004387914.1" /db_xref="GI:330824611" /db_xref="GO:0008233" /db_xref="InterPro:IPR002142" /db_xref="GeneID:10483064" /translation="MTLLPHLAARLFGVPLAIHRPKLDIILSVLGARIGLADLAASVG YTPAARAPGPPSGKVAVIPIHGTLVRRTSGLEAESGLASYTGIAAQLDAALTSPEVAA ILLDIDSPGGESGGVFDLADRIRVASQVKPVWAVANDMAFSAAYALASAATRVFVART GGVGSIGVIAMHIDQSVKDAKDGVRYTAVFAGERKNDLNPHEPLSDAAHAVLKAEVDR VYELFVETVARHRGLDADAVRATEAGLFFGPDAVATGLADAVGSLDDALTQLTQSLSP LPTQVAPASQAGFLRNHQTESSMNDRTDPAAPDRPLADPAGSPPQPSAASTATALSVA DAVEIAQTCTLAGRTDLIAGFLDAQSSPAKVRSQLLAAQAEASPEITSRIAPDAARPV ASNPLIDAAKQIAAQSTKKEI" misc_feature 2116711..2117349 /locus_tag="Alide2_2023" /note="Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_36K_type; cd07022" /db_xref="CDD:132933" misc_feature order(2116729..2116731,2116852..2116854,2116963..2116965, 2117008..2117010,2117014..2117016,2117038..2117049, 2117194..2117196,2117263..2117271,2117275..2117277, 2117284..2117286) /locus_tag="Alide2_2023" /note="tandem repeat interface [polypeptide binding]; other site" /db_xref="CDD:132933" misc_feature order(2116789..2116791,2116810..2116812,2116888..2116890, 2117086..2117088,2117092..2117106,2117188..2117190, 2117200..2117202) /locus_tag="Alide2_2023" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132933" misc_feature 2116963..2116965 /locus_tag="Alide2_2023" /note="active site residues [active]" /db_xref="CDD:132933" gene 2117780..2118157 /locus_tag="Alide2_2024" /db_xref="GeneID:10483065" CDS 2117780..2118157 /locus_tag="Alide2_2024" /inference="similar to AA sequence:KEGG:Dtpsy_3205" /note="KEGG: dia:Dtpsy_3205 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387915.1" /db_xref="GI:330824612" /db_xref="GeneID:10483065" /translation="MPALAEPLNLGDLLKYEAPNLYSRDRVTVASGQNLPLGTVVGIV TATAKFKQLDPSAEDGTQVAAGVLLQACDATLIDRDDGLVVARHAIVAHHALAWPDAI TTAEKLTAIAQLKALGVLVRQGA" gene 2118160..2119164 /locus_tag="Alide2_2025" /db_xref="GeneID:10483066" CDS 2118160..2119164 /locus_tag="Alide2_2025" /inference="similar to AA sequence:KEGG:Dtpsy_3204" /note="KEGG: dia:Dtpsy_3204 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387916.1" /db_xref="GI:330824613" /db_xref="GeneID:10483066" /translation="MNNPFSNPAFSMTALTAAINILPNRYGRLEELNLMPSKPVRQRQ IVVEEMNGVLNLLPTLPPGSPGTVGVRGKRKLRSFVVPHIPHDDVVLPEEVQGIRAFG SETETETVAGVIARHLETMRNKHAITLEHLRMGALKGVILDADGSVLYDLFDAFDITQ QAVAFELGTAGTNVKAKCTTVLATIEENLKGEFMNGVHCLCSPEFFAALTGHAKVEKA FENWQNGAILINDVRRGFTYGGITFEEYRGQATDASGTARRFIAAGEAHAFPLGTIDT FSTYFAPADFNETVNTVGQPLYAKQEPRKFDRGTDLHTQSNPLPMCHRPGVLVKLTVA " gene 2119164..2119466 /locus_tag="Alide2_2026" /db_xref="GeneID:10483067" CDS 2119164..2119466 /locus_tag="Alide2_2026" /inference="similar to AA sequence:KEGG:Dtpsy_3203" /note="KEGG: dia:Dtpsy_3203 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387917.1" /db_xref="GI:330824614" /db_xref="GeneID:10483067" /translation="MSLVEQIYESAANAGLLKDCLWCPSDGTTAQRHPVGFAAPDDTV FDGLASTTDYQMSYPASVFLGLAPRDTVEIDGVIYQVRSTRAVGDGSEMRAQLTRV" gene 2119471..2119917 /locus_tag="Alide2_2027" /db_xref="GeneID:10483068" CDS 2119471..2119917 /locus_tag="Alide2_2027" /inference="similar to AA sequence:KEGG:Dtpsy_3202" /note="KEGG: dia:Dtpsy_3202 signal peptide protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387918.1" /db_xref="GI:330824615" /db_xref="GeneID:10483068" /translation="MSGNSIREQILLAVMAAVRTPVESLGATLHRSPTVAISREQCPA LVVFPESESITERANDRVTRELTVRIVALARAVPPAIPETEADRLLTAAHAALLVDRN LGGLALGIREQECEWDVEDADAVAATIPARYAITYRTLDTDLSAKG" gene 2119923..2120144 /locus_tag="Alide2_2028" /db_xref="GeneID:10483069" CDS 2119923..2120144 /locus_tag="Alide2_2028" /inference="similar to AA sequence:KEGG:Dtpsy_3201" /note="KEGG: dia:Dtpsy_3201 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387919.1" /db_xref="GI:330824616" /db_xref="GeneID:10483069" /translation="MTSIVLTQPHTHAGQAHKAGERLDVDGSTADWLIANGTARHDRQ PVPEPQPQGDGTPIEPIRPITTQRKESKS" gene 2120141..2120893 /locus_tag="Alide2_2029" /db_xref="GeneID:10483070" CDS 2120141..2120893 /locus_tag="Alide2_2029" /inference="similar to AA sequence:KEGG:Dtpsy_3200" /note="KEGG: dia:Dtpsy_3200 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387920.1" /db_xref="GI:330824617" /db_xref="GeneID:10483070" /translation="MSTYASFQGRVFLGKRDESGLPIEVRSPGNVAELKLSLKTDVLE HYESQTGQRSLDHRMVKQKSATVNLTIEEFTKENLALALYGNHVTGSTGSVTAETIGG AAPVVGDRYFFAHPKVSALVVTDSAGTPATLTAGTHFTADTDFGALQFLDTTGFTAPF KAAYSYGVATEIGIFTQALPERFLRLEGVNTAQGNAKVLVELYRVAFDPLKEISFISD EYNKFELEGSLLADTTKPYDAVLGQFGRIVQL" gene 2120905..2121303 /locus_tag="Alide2_2030" /db_xref="GeneID:10483071" CDS 2120905..2121303 /locus_tag="Alide2_2030" /inference="similar to AA sequence:KEGG:Dtpsy_3199" /note="KEGG: dia:Dtpsy_3199 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387921.1" /db_xref="GI:330824618" /db_xref="GeneID:10483071" /translation="MSDLETLIPQAAELVIDGEPLAIKPLKVGQMPAFLRAITPVMQQ IGGDGIDWLALFGERGDDLLTAVSIAVGKPRAWVDELAADEAILLAAKVIEVNADFFT RTVMPRLDGLIARTGATAAIATGGSTPSST" gene 2121300..2121509 /locus_tag="Alide2_2031" /db_xref="GeneID:10483072" CDS 2121300..2121509 /locus_tag="Alide2_2031" /inference="similar to AA sequence:KEGG:RSc0865" /note="manually curated; KEGG: rso:RSc0865 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387922.1" /db_xref="GI:330824619" /db_xref="GeneID:10483072" /translation="MIAHGHRLPDILDYTLAQVRGFAAATAREDVARDARLLSLIAIG ARGDARHIDQTLDRLQDHAHLGSHR" gene 2121484..2122128 /locus_tag="Alide2_2032" /db_xref="GeneID:10483073" CDS 2121484..2122128 /locus_tag="Alide2_2032" /inference="similar to AA sequence:KEGG:Dtpsy_3198" /note="KEGG: dia:Dtpsy_3198 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387923.1" /db_xref="GI:330824620" /db_xref="GeneID:10483073" /translation="MRISVRIDSKAAQAQLRRWGGEFREKVQKAVARGIAGEAAELKE DVRSHVAGQMAVVKKSFVKGFTAKVLDKDRSRLPALYVGSRIPWSGIHERGGVIGGRM LIPLHGRVGRKRFKAQIAELMRGGNAYFIKNAKGNIVLMAENIKEHDRPLSGFKRRYR KAEGVKRLKRGADVPIAVLVPRVQLKKRLNVERIVAARIPRLSARIEKQLRLVD" gene 2122130..2126167 /locus_tag="Alide2_2033" /db_xref="GeneID:10483074" CDS 2122130..2126167 /locus_tag="Alide2_2033" /inference="protein motif:TFAM:TIGR02675" /note="TIGRFAM: Tape measure domain; KEGG: dia:Dtpsy_3197 phage tape measure protein" /codon_start=1 /transl_table=11 /product="phage tape measure protein" /protein_id="YP_004387924.1" /db_xref="GI:330824621" /db_xref="InterPro:IPR013491" /db_xref="GeneID:10483074" /translation="MANRISILVALEGADEGLKRAINNAERSLGGFGISAKSASDKAA AGVAEVKAGMNAFGDQVAKAKTQLLAFLTLNWAAGKVQEIVQIADAWNMMSARLKLAT AGQREYTVAQKELFAIAQRIGVPIQETATLYGKLQQAVRMLGGEQKDALSLTESISQA LRISGASATEAQSSLLQFGQALASGVLRGEEFNSVVENSPRLAKALADGLNVPIGRLR KLAEEGRLTADVVVNALMSQKDKLAAEYAQLPVTVSQAFTRLSNAFGQWISKLDESTG FTKKLAEALTWLSENLDTVMKWLGRIAEVGLAVLVYRLIPALIIAWQTAGAAAVTSAS TTAAAWATANLSLSNAIATVGKLRVAFGVLGAAIIGWEIGTWLSEKFEIVRKAGIFMV EVLMKGIEHLRFQWEVFAAIFTSDTIAEATKRHEQRLAEMNRIFAEMYADATEGANAA KGAMNTAATAAEEIAKRLEAVRQGTQEAVGRGIEAVHAALEKLKSRLGEVEQAVGKAQ GVVNDATAKMAEAYKGLTSIVEASLAQQVQAVKNRYDQEKAELDRTQQSETARITKST QLLTEALTQQATLRRQATTETLGLIDQETQARKDAAARQGQTEEERRANVQRVENDIL ATKRQTLTQALSEYRQHIDALNAEANRHLAEVQRIEEAKRQLSMSTEERIRDIRRQGM TEYEATEDRKRQIAEMQEQARRALANGELELARQLAQKAMDMAAQVATSQTNEAKRGE EARKQSEQAVSQVTQLEAQSREAYRRQEYQQATDLMRQADQLRAELAQKAKDADAQAA QGKQGVREAIDRIRQSEEILNQTLDAEAKAHQTAARSAITARDEIQRTLTETTRQIDD ITAKLKDGLKVTLDADTTRFDKAIADLDKALAEKEYLLQIQADLQEAEKKLKEYEQLL KEGKTLPVDADVSKAKEALDKLKTYADQNAQFELKVATEKAQAAITNVEGMIKALDRI QTESQHQVASNVGAVRAEIDSLNGRNTSSTHTIYVTKVETNATGGLVGGVRRFADGGA VAPAFPRMSGGSVPGSGHHDTVPRTLDAGAFVIRKAAVQKYGSGALSRLANGVAHFAV GGRVASLGGTGSTGSDPNDKPSRPKKNREAFEALKMIDLGLQGMNEYTSWLQWNYGAS VSLDMRSKTMDNYGKQAQQDRRTLEDFIGRKTLTGNERQNLERIKQTWRQAMAQPLLW GKDLERELIDYMEQNQGEFYRRGGLAKSDTVPAMLTPGEFVVNRQAVARYGAGFFEAI NNLSAPAQALAGRALAGIQGFASGGLVQPASRSLPRPSLSESTPTRTVRVELSSGQQK VNATVDARDEARLLQLLDAARARTA" misc_feature 2122556..2125630 /locus_tag="Alide2_2033" /note="Phage-related minor tail protein [Function unknown]; Region: COG5281" /db_xref="CDD:34878" misc_feature 2122598..2122822 /locus_tag="Alide2_2033" /note="Mu-like prophage protein [General function prediction only]; Region: COG3941; cl09192" /db_xref="CDD:142184" gene 2126204..2126614 /locus_tag="Alide2_2034" /db_xref="GeneID:10483075" CDS 2126204..2126614 /locus_tag="Alide2_2034" /inference="similar to AA sequence:KEGG:Dtpsy_3196" /note="KEGG: dia:Dtpsy_3196 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387925.1" /db_xref="GI:330824622" /db_xref="GeneID:10483075" /translation="MQLKNLDTGVALPLPDDLLWSDEHAWSPAVANASYLITGALLIQ SATRQAGRPITLVGAPDMAWVTRAAVEQLRAWAAIPVGGSTGRFELTFADGRVFTVAF RHAETAIEAEPVLGIPARSGNDFYRLTLRFLEIA" gene 2126614..2130222 /locus_tag="Alide2_2035" /db_xref="GeneID:10483076" CDS 2126614..2130222 /locus_tag="Alide2_2035" /inference="similar to AA sequence:KEGG:Dtpsy_3195" /note="KEGG: dia:Dtpsy_3195 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387926.1" /db_xref="GI:330824623" /db_xref="GeneID:10483076" /translation="MPIQSGDVKLLKSAVMADVPEGGGAPTGLVIADGVSNAIFPDIS ELDRAGGRVNLRKSFVQVATDDTDTYFGANVIVAEPPQDERVSVTLFSTRKTFDTREQ AQTRIEAYLNKGPEWAGYLFENHIAGQRVIQLFQRLSDAVPNVGQTLVLIENEGLPTQ KEQYIRATAVSVVERSFTYNTDQDYKAAVVTVAISDALRFDFTGSPASRTFTRATNST KTRDTVVADAGTYVGVVPLTQAANVGDFTIKGASIYTQLVPSAQTETPISFVPPYAAA GLPVPGAAPVSYTASHAWNTSIKFNLPGGCLPGSLSIVTDGVTIFDDAGLLKTASGTL GTIDYANGILSLNSGSMSNSKAITYTPAAQLQRAPQSAEIAVTPESRSQSYVGSVNPV PQPATLAISYMAQGRWYVLSDGGNGSLKGLDASYGAGTFNKNTGAFVVTLGALPDVGS SLILTWNVPTQETQQPTAALKASQALQLAPPEGKSVQPGTLTITWPHESGTGTRTASA ATSGTLSGAATGNLNVAQNLLSFAPNVLPPVGALLTVDYVAGPKQEDSFAHPSRDGQG KVPVTATLGSIEPGSLEIEWNTLTDTAVLGVYTLQQIQAMGLGLWNGVDPTQYARDDG AGNVLRAGQVIGSVNYATGAVQFQPDVTVKIPSPVYGAQRLGWASGVGQMFRLNYGGI SYVDAPSMYPNDESGYVKLRYNSAGSTSNHSETFAFSPSFRLVPGVNAQVVTGTVLLA IAGSQPWGDNGQGTLREFTPSGWVTRGSINYLSGAVTLISWSAGATNSITRASCVTTV GENISSEYVFRTGAAPLRPGSLSIQFARAVGGTQTVTAGIDGAISASGVSGNVDYDTG LVRVRFGTVVTAAGNESEPWFDAENVRPDAKIFRPEPVAASSLRYSAVAYSYLPLDAA LLGIDPVRLPSDGRVPIFRPGGFAVVGHTGRITASVSNGQTIDCARVRLSRVRVVGND GVVIHTGYVTDLEAGTVTFTDVTGYSQPVTIEHRIEDMAVVRDVQINGEISFTRPLTH AYPLASPGDPVSGSFVSSALVAGDLFARVNLVFDQSTWNGSWSDELVGSAATATFNHT QYPITVTNRGALTERWVVRMTNSTSFEVIGENVGVIATGNTSADCAPNNPATGVPYFR LPALGWGNGWATGNVLRFNTIGSQFPVWVVRTVQQGPESVPDDHFTLLIRGDVDTP" gene 2130270..2131535 /locus_tag="Alide2_2036" /db_xref="GeneID:10483077" CDS 2130270..2131535 /locus_tag="Alide2_2036" /inference="similar to AA sequence:KEGG:Dtpsy_3194" /note="KEGG: dia:Dtpsy_3194 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387927.1" /db_xref="GI:330824624" /db_xref="GeneID:10483077" /translation="MTDLSVKYFTSGMTGAPQIANNWGDLVTMLDACLINGFALKAID TLTFADGIATATISSGHAYRPFQVVEIAGAEQTEYNGQFRVLTATMTTFTYAVTGTPV SPATTATSLSAKVAPLGWEKPFSSTHKAAYRSKNPQSPQNILLIDNSLKTPNYTTGWA KWANVGIVEDLSDIDTIVGAQAPYDPNNPTQNWKQVTASQWGWYKWFHARGPQYESNG DSGGGGRNWVLIGDDRLFFLFCTNAAGYGWYGRNSYCFGDLISFKPGDNYATVLAADD NYSGMSNYWSYPGQFSGYGLVSSLDFTGKVLLRNHTQLGNPVRFGLTSLNTNNGQQIC GRGPTPFPNGADYSLWLLPTYVRQEDGHMRGILPGMLWMPQDRPYSDQTIVDNVVGQE GRRFLLVRTQYSSETEGAQIAFDITGPWR" gene 2131539..2132624 /locus_tag="Alide2_2037" /db_xref="GeneID:10483078" CDS 2131539..2132624 /locus_tag="Alide2_2037" /inference="similar to AA sequence:KEGG:MCA2674" /note="KEGG: mca:MCA2674 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387928.1" /db_xref="GI:330824625" /db_xref="GeneID:10483078" /translation="MSYPLSESFATAPATGYTAVLGGMSATHNSAQQSIDISAPNSQS ILRFNEAAHGDFWFEADIELLTDPSARKHIGLWMTTGNGSEGYRFAHLDGGWSVSRWN SGFGDGAGVTGGVNDGARPIAGLADVAPTFNVGQRSTLRCEVIVGALDANGVPWARLI QFKADGVLMFQVGDAAYRGKLIPGVFLYGATARVHAIAGDTPSGLPAFPTTVGVNADD DLLPLAGGSTSVPPNPAANIGVNAQVDLSRLNSPSSNHWNRGGGYDWQFHSIPNGRKN IHFSGHGFIVGTVKEKGQPDQPLARRVQLISENTRVLVAETWSDTGGNYQFELLDPAQ RYTVVSYDHKQMYRAVIADNLRPEMMP" gene 2132621..2133016 /locus_tag="Alide2_2038" /db_xref="GeneID:10483079" CDS 2132621..2133016 /locus_tag="Alide2_2038" /inference="similar to AA sequence:KEGG:MCA2675" /note="KEGG: mca:MCA2675 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387929.1" /db_xref="GI:330824626" /db_xref="GeneID:10483079" /translation="MTVAITVEHNEARLAGTLAFLDAGTNPARLRIYGGTRPATPATT PASAMLVEIRLTKPAGTIAGGLLTLTQQEDGLITSTGIATWARLVNGNEVTALDLDCS GTDGDGDVKLASTNLYLGGDARMVSAILG" gene 2133020..2135047 /locus_tag="Alide2_2039" /db_xref="GeneID:10483080" CDS 2133020..2135047 /locus_tag="Alide2_2039" /inference="similar to AA sequence:KEGG:Dtpsy_3191" /note="KEGG: dia:Dtpsy_3191 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387930.1" /db_xref="GI:330824627" /db_xref="GeneID:10483080" /translation="MPAVTNEVTLVATLPAPAVTVVVGPPLVDLLFDQPAATDANLVF GANYIAPRDDVTLWATLPLPVVTIKFIPPARAELLAQLPGLTVQSLVLRPSVPLNVEA GAGANLPGIVFTGEVRYESHTQRPTVGRTSHLWQVAKQTEDGAKQGQQDAAATPAGWK TFWRRTIAAPQGVDHRLPPVLASLPTQHRTGQQQARPFHDLTWFAHQDGTYLELARLS LFQNASRLRDATRFRHQDGDRTKRAGRVSLWQTARQLTQRQGSDFQSASAFVWGWRGR YQDAVPPPPGISFWVIPEPPAPQPCYTPSTHLLFATLAPADSHLLFVCENHIDPPPPD GEPVVVPVRRVYFVINNVTLHRLPDGLPVPVFNLSLSLDAASWTWGFDALLPAAATSL VAPGGNGGPVELVASVNGTQFRVLAESISRERVFGDASIRISGRGRNAVLAAPYAPVM NFQQPQARTARQLMDDALTLNGIPLGWSIDWGLTDWNVPAGVFTQQGTWMEALVAIAS AAGGYLIPHPSDQSIRVRHRYPVAPWEWNTVTPDFVLPVDAVARESLRWVEKPGYNRV FVSGQDVGVLGQVSRAGTAGDVLAPMVVDALITEAAAARQRGISVLADTGQQIEVSLR LPVLAETGIIEPGAFVEYQDGSVTRLGIVRSTQVEAGMPEVWQTLGVQSHA" gene 2135040..2135261 /locus_tag="Alide2_2040" /db_xref="GeneID:10483081" CDS 2135040..2135261 /locus_tag="Alide2_2040" /inference="similar to AA sequence:KEGG:Dtpsy_3190" /note="KEGG: dia:Dtpsy_3190 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387931.1" /db_xref="GI:330824628" /db_xref="GeneID:10483081" /translation="MHNLYEQFRQLIPDPPLQAGTVVGVGSGVVTVALPGGGLIRARG SAPIGQKVFVRDDVIEGVAPSLTLEIIEI" gene 2135328..2135633 /locus_tag="Alide2_2041" /db_xref="GeneID:10483082" CDS 2135328..2135633 /locus_tag="Alide2_2041" /inference="similar to AA sequence:KEGG:mma_2786" /note="KEGG: mms:mma_2786 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387932.1" /db_xref="GI:330824629" /db_xref="GeneID:10483082" /translation="MTEPEHQQPALIENMLLLRREDFDELLDRAAERGAERCLAHIGL ENGSAAKDIRELRDLLEAWRDARRTAWQTTIKVVTTGILAALLVGAAIKLKLMGGVQ" gene 2135630..2135857 /locus_tag="Alide2_2042" /db_xref="GeneID:10483083" CDS 2135630..2135857 /locus_tag="Alide2_2042" /inference="similar to AA sequence:KEGG:NIDE0123" /note="KEGG: nde:NIDE0123 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387933.1" /db_xref="GI:330824630" /db_xref="GeneID:10483083" /translation="MTAKPKICLLDDWRRVMRRAWSIRFSLLAAAFTAAEVVVPLFGD VLPRGAFVLLAFAASIGATVARIVAQPEMHR" gene 2135854..2136354 /locus_tag="Alide2_2043" /db_xref="GeneID:10483084" CDS 2135854..2136354 /locus_tag="Alide2_2043" /inference="protein motif:PFAM:PF00959" /note="PFAM: Glycoside hydrolase, family 24; KEGG: sml:Smlt1851 putative glycosidase" /codon_start=1 /transl_table=11 /product="glycoside hydrolase family 24" /protein_id="YP_004387934.1" /db_xref="GI:330824631" /db_xref="GO:0003796" /db_xref="InterPro:IPR002196" /db_xref="GeneID:10483084" /translation="MIRPPQRRTVTALTLSAAALVGIVLHEGYTDRAVIPVKGDVPTI GFGTTTDVKLGDTTTPPKALARALTDVQQFEGALKTCVTVPLAQHEYDALVSFSYNVG SRAFCQSTLVRKLNAEDYAGACSELLRWRFFQGKDCALPANVRLCGGLATRRQSEYRQ CVGEAP" misc_feature 2135920..2136324 /locus_tag="Alide2_2043" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" misc_feature 2135932..2135934 /locus_tag="Alide2_2043" /note="catalytic residue [active]" /db_xref="CDD:29558" gene 2136351..2136848 /locus_tag="Alide2_2044" /db_xref="GeneID:10483085" CDS 2136351..2136848 /locus_tag="Alide2_2044" /inference="similar to AA sequence:KEGG:NIDE0125" /note="KEGG: nde:NIDE0125 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387935.1" /db_xref="GI:330824632" /db_xref="GeneID:10483085" /translation="MNLIPWPYRLLTLAALSVALVGFGWIKGASHVQAQWDAAIQQQA LQAAAVRERQAQATVKVVTQYVDRVRVVREKGDTIIKEVPVYVPVQADAACTINRGFV RLHDAAAAGDLPEPARDADAAAAGIALSAVAGTLAANYQTCHENAEQLRALQAWVSEM ASTTK" sig_peptide 2136351..2136455 /locus_tag="Alide2_2044" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.883) with cleavage site probability 0.653 at residue 35" gene 2136957..2137247 /locus_tag="Alide2_2045" /db_xref="GeneID:10483086" CDS 2136957..2137247 /locus_tag="Alide2_2045" /inference="similar to AA sequence:KEGG:RSc3214" /note="KEGG: rso:RSc3214 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387936.1" /db_xref="GI:330824633" /db_xref="GeneID:10483086" /translation="MSNRFKHAVIDDVTSRNIDASLQEHLLDLFESAMKSVATTLVRE AKFDTTDFATAKGRGCEGFTLLVSRTRADSRDGWFGAFQRGDERLDVIGHLE" gene complement(2137252..2138199) /locus_tag="Alide2_2046" /db_xref="GeneID:10483087" CDS complement(2137252..2138199) /locus_tag="Alide2_2046" /inference="protein motif:PFAM:PF04373" /note="PFAM: Protein of unknown function DUF511; KEGG: dno:DNO_0218 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387937.1" /db_xref="GI:330824634" /db_xref="InterPro:IPR007468" /db_xref="GeneID:10483087" /translation="MALNLAKAVIGYLKERPEEKFTARQIAEWVFATYPDECQEKRAN SRGDYIKSDADLVQQLVAEISSQRPRMQTKHPELKTTEGRPRKYYYSERSDSAEVAAV ESEGTSAAADASALKIDEHALYPLLSQYLWEEFGVFSKRIDEKRSSNKRGPNGNRWLY PDVVGMEDLGKEWHREVRDCVTQYSDKRTKLWSFEVKLLINRSNVRECFFQAVSNSSW ANFGYLVAAELGGTDTLKELRMLFAAHGIGFIKLDVDNPADSQVLIPARERDEIDWDM ANRLATENRDFLEYVKLVKQFYQTGEARPADWDVPETGD" misc_feature complement(2137273..2138172) /locus_tag="Alide2_2046" /note="Protein of unknown function (DUF511); Region: DUF511; cl01114" /db_xref="CDD:154205" gene complement(2138212..2138988) /locus_tag="Alide2_2047" /db_xref="GeneID:10483088" CDS complement(2138212..2138988) /locus_tag="Alide2_2047" /inference="similar to AA sequence:KEGG:BAV0365" /note="KEGG: bav:BAV0365 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387938.1" /db_xref="GI:330824635" /db_xref="GeneID:10483088" /translation="MSVLSFLTDTASSAVLSTTEQSSITTSIITLQSRMALHFDSGVI AQHFRFGSSTRGTILPRSMDEQSDIDYMVVFSDGSATPQTYLNRLKTFVEKRYGSSEI YQSSPTIVLELNHIKFDLVPATKTWLGELQIPNGSGGWMTTNPNDFNATLEAKNKDNN SLIKPTIRLMKYWNAASGFPFDSFAMEKWICGQGFWFQSNQKDYLFSVIDNLSTDSSY SQRVNNEITRAKTIVAKVRQCEKDQMPVTAENEVKKLFRL" misc_feature complement(2138542..2138880) /locus_tag="Alide2_2047" /note="Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme; Region: NT_2-5OAS_ClassI-CCAase; cd05400" /db_xref="CDD:143390" misc_feature complement(order(2138548..2138550,2138557..2138559, 2138569..2138571,2138632..2138634,2138674..2138679, 2138779..2138781,2138785..2138787,2138812..2138820, 2138824..2138826,2138833..2138841)) /locus_tag="Alide2_2047" /note="active site" /db_xref="CDD:143390" misc_feature complement(order(2138548..2138550,2138557..2138559, 2138569..2138571,2138674..2138676,2138779..2138781, 2138785..2138787,2138833..2138838)) /locus_tag="Alide2_2047" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143390" misc_feature complement(order(2138632..2138634,2138779..2138781, 2138785..2138787)) /locus_tag="Alide2_2047" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143390" gene complement(2138993..2139532) /locus_tag="Alide2_2048" /db_xref="GeneID:10483089" CDS complement(2138993..2139532) /locus_tag="Alide2_2048" /inference="similar to AA sequence:KEGG:Bpro_1539" /note="manually curated; KEGG: pol:Bpro_1539 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387939.1" /db_xref="GI:330824636" /db_xref="GeneID:10483089" /translation="MVREYVMAGASPQDQAKISALCREAERLEEDALYSSKGHFNAED TWVRRNYWLGVPATALGAIAGAALIKSQPEWASAFTLLASLLTGLMTFLKPNERAAMH RAAAGQFLALRNEARFFREIELLETDRLGELPERLKALSSARNELNQKSPSIPRRAFV AARKGIEEGEATHKVDKEK" gene complement(2139540..2142611) /locus_tag="Alide2_2049" /db_xref="GeneID:10483090" CDS complement(2139540..2142611) /locus_tag="Alide2_2049" /inference="protein motif:PFAM:PF04313" /note="KEGG: xfm:Xfasm12_2267 type I restriction-modification system endonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal" /codon_start=1 /transl_table=11 /product="Restriction endonuclease, type I, EcoRI, R subunit/type III" /protein_id="YP_004387940.1" /db_xref="GI:330824637" /db_xref="GO:0003677" /db_xref="GO:0004519" /db_xref="GO:0005524" /db_xref="GO:0016787" /db_xref="InterPro:IPR006935" /db_xref="InterPro:IPR007409" /db_xref="InterPro:IPR014001" /db_xref="GeneID:10483090" /translation="MAKTDTSERWFEARVVRGLTGVPQPEYSHALAPTDFAATHNGYV QGKPTDYNRDVALDVAQLLAFLQATQPKAVETLELAADGIKRTQFLHRLQGEITKRGV VDVLRKGVSHGPVHVDLYKLLPTPGNAAAADAFGKNIFSVTRQVRYSNDSGNELDLAI FINGLPVLTFELKNSLTKQTLADAIVQYQTTRSPQELLFQLGRCVAHVAVDDAEAAFC TELKGKASWFLPFNQGWNSGAGNPPNPDGLKTDYLWKQVLNRESLANIIESYAQVVEE EEADASGKKRKKRKQIFPRFHQLRTVRALLRRAHTDGVGKRYLIQHSAGSGKSNTIAW LAHQLVELRRKDDPMTAQFDSIVVITDRRALDTQIARTIKGYDHVAAIFGHSDNAQEL REYLRRGKKIIVTTVQKFPFILDELGDLSGKSFALLIDEAHSSQGGKTTARMHEALGG KVAEEEFEEDSTQDAVNAEIEKRIASRKLLANASYFAFTATPKNKTLELFGEKTLVGD KVQFRSPEELTYTTKQAIQEKFILDVVENYTPYDSFYQVAKTVADDPEFDKVKALKKI RHYVESHDKAIRRKAEIMVDHFIAQVAGKQKIGGKARAMIVCNGIARAIDYWREVSDY LTQIKSPYKAIVAYSGDFEIGGQKKTEADLNGFPSKDIPANLKQDPYRFLIVANKFVT GFDEPLLHTMYVDKPLAGVLAVQTLSRLNRAHPQKHDTFVLDFADNAEAVKAAFQDYY RATIQTGETDANKLHDLKAELDGQQVYSWQQVEDLVALYLSGADRDKLDPILDACVVE YTDKLGEDDQVKFKGKAKAFVRSYGFLAAILSYGHPTWEKLSIFLNFLIPKLPAPKEE DLSKGVLETIDMDSYRVEAKAALKMAMADADATVEPVPPGGGGGKGEADIDKLSAIIK TFNDLFGNIEWKDEDKIRKVIAEEIPARVAQDKAYQNAQANSDKQNAKLEHDKALNRV VLELLSDHTELFKQFSDNPNFKRWLTDTVFDATYQQGTVPPKAPPQAGASA" misc_feature complement(2139573..2142536) /locus_tag="Alide2_2049" /note="Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]; Region: COG0610" /db_xref="CDD:30955" misc_feature complement(2142000..>2142206) /locus_tag="Alide2_2049" /note="Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N; pfam04313" /db_xref="CDD:190940" misc_feature complement(<2141313..2141657) /locus_tag="Alide2_2049" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature complement(2141625..2141639) /locus_tag="Alide2_2049" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature complement(2141313..2141324) /locus_tag="Alide2_2049" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" gene complement(2142598..2144022) /locus_tag="Alide2_2050" /db_xref="GeneID:10483091" CDS complement(2142598..2144022) /locus_tag="Alide2_2050" /inference="similar to AA sequence:KEGG:MCA0277" /note="KEGG: mca:MCA0277 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387941.1" /db_xref="GI:330824638" /db_xref="GeneID:10483091" /translation="MAVASPYPNYQPLRSRWVPRVPEHWSLLRAKNFLREIDDRSKAG EETLLSMRMQRGLVPHNDVSVKRIAPENLIGYKKAQPDELVLNRMQAGNAMFFRNRQP GLVSPDYAVFRLLRDDNPEYLGHLFRSWPMRGLFRSESKGLGTGTSGFLRLYSDRFTA LEIPLPPRPEQDQIVAYLRAQDAHIARFIQVKRDLIKLLTEQKLRIIDHAVTHGLDAS VTLKPSGIEWLGEVPEHWEVAFIKHIADVRFSGVDKHSHDHETPVRLCNYTDVYKNDR ITGDMDLMRATATEAEIARLTLKAGDVILTKDSETPDDIGVPAWVPEDLPGVVCAYHL GLLRPVPNRVLGEFLFRAIGSARTAQQFHVLATGVTRFALGKHDVKNAVVALPPVEEQ QSICRWITNECQPLDDAIARTEEEIKLIREYRDRLIADVVTGQVDVRGWQPDPDDVVD DAALAALGDDQEDVTEEEDGDGED" misc_feature complement(2142721..2143950) /locus_tag="Alide2_2050" /note="Restriction endonuclease S subunits [Defense mechanisms]; Region: HsdS; COG0732" /db_xref="CDD:31076" misc_feature complement(2143429..>2143590) /locus_tag="Alide2_2050" /note="Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420" /db_xref="CDD:189980" misc_feature complement(2142757..2143326) /locus_tag="Alide2_2050" /note="Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420" /db_xref="CDD:189980" gene complement(2144022..2146406) /locus_tag="Alide2_2051" /db_xref="GeneID:10483092" CDS complement(2144022..2146406) /locus_tag="Alide2_2051" /inference="protein motif:PFAM:PF02384" /note="PFAM: DNA methylase, adenine-specific; KEGG: xfn:XfasM23_2177 N-6 DNA methylase" /codon_start=1 /transl_table=11 /product="N-6 DNA methylase" /protein_id="YP_004387942.1" /db_xref="GI:330824639" /db_xref="GO:0003677" /db_xref="GO:0008170" /db_xref="InterPro:IPR003356" /db_xref="GeneID:10483092" /translation="MQKKQQQDQSQIKWISDFIWNIADDRLRDVYVRGKYRDVILPFT VLRRLDAVLEATKDAVLERKKFLDTHKVAEQDGALRMAAGQAFYNVSEFTLAKLKASA AGQRLRDDFIAYLDGFSPNVQEILTKFNFRNQIQKLVDSHVLGYLIDDFLDPEVNLAP LPVKDADGRIKLPALDNHGMGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFL PVADRIDSSTYSLYDGSCGTGGMLTVAEEALHELAEEHGKEVSIHLFGQEISDETYAI CKADLLLKGEGAEAENIVGGADKSTLSADQFRSREFDFMISNPPYGKSWKTDLERMGG KKEFNDPRFIVSHAGNAEFKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSA LFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLANKKAEARRGKV QLIDASGWFQPLRRNLGKKNCELADADIARILDLYLGEAQETAQSKWFDTQDFGYWKI TVERPLRLKSQLSDERIEPLRFATGDEALRAEIYATHGDALYTEFAKRKPAIEAWLKG EDENEDDDSEDSDSGDDSEAPAARKAVPAKRRKKLLDATTWQRDKGLMEVAQRAQQAL GSAVFDDHNEFRTRFDAALKARGEKLGAPEKKAIYKAVSWRDEAAPPVIAKRSKLKAG EHFEPGFDGAYLETVGKDRFMVEYEPDSELRDTEQVPLKEPGGIDAFFAREVLPHAPD AWIATDKTQIGYEISFARYFYKPAPLRTLAEIRADILALEQQSEGLLHKIVGGA" misc_feature complement(2144919..2146355) /locus_tag="Alide2_2051" /note="Type I restriction-modification system methyltransferase subunit [Defense mechanisms]; Region: HsdM; COG0286" /db_xref="CDD:30634" misc_feature complement(2145960..2146355) /locus_tag="Alide2_2051" /note="HsdM N-terminal domain; Region: HsdM_N; pfam12161" /db_xref="CDD:192949" gene complement(2146418..2148136) /locus_tag="Alide2_2052" /db_xref="GeneID:10483093" CDS complement(2146418..2148136) /locus_tag="Alide2_2052" /inference="protein motif:PFAM:PF03235" /note="PFAM: Domain of unknown function DUF262; Domain of unknown function DUF1524 RloF; KEGG: gca:Galf_1217 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387943.1" /db_xref="GI:330824640" /db_xref="InterPro:IPR004919" /db_xref="InterPro:IPR011089" /db_xref="GeneID:10483093" /translation="MAKTLEAHDKLIREIFEGSYQFEIPDYQRPYAWTIEQATELFDD LYAAMQDARISGASSQYFLGSIVLIKNDRDPKSSVVDGQQRLSTLTMLFAVLRTVMPD AAEDITDFLYKKGKVSLGEKNEYRLTAREEDADFFRTNIQEPGGIAQLVASTDKLKDS RLRYRENATLLLEKAKALPPAELIALWQFLANDCSLVVISTPDLEAAYRIFSVLNNRG LDLAPIDIIKAQVLGLIRTTAGDVKSRAYAKEWSRIESSLGRDAFGDLFGHIRSIYAK KKQKYILVKEFQEHVTEYKTPVDLVDKVIKPYAEVWDFVRDADFEATEHAETINEHLS WLNRVDFKDWVPPALVYFKRFRQQPKLLAEFFQSLERLTYFLLVTKVGINERIETYAA LTKEVEPETFKGDLAALTTLALTDAQKRKFVAALDGDVYDDLPKARMALVLRLESLVR APGVQLQDAVSLEHVLPQTPPDGSDWIKWFPDEDERDGWTHRLANLVPLDRNKNSSAS NYDFAKKKDAYFRGKGKASPFVLTQEVRAENEWTPTLLAERQKRLVGVLKDHWNLAVS TGTAPS" misc_feature complement(<2147852..2148103) /locus_tag="Alide2_2052" /note="Protein of unknown function DUF262; Region: DUF262; cl14890" /db_xref="CDD:196851" misc_feature complement(2146475..2146753) /locus_tag="Alide2_2052" /note="Protein of unknown function DUF262; Region: DUF262; cl14890" /db_xref="CDD:196851" gene complement(2148152..2149051) /locus_tag="Alide2_2053" /db_xref="GeneID:10483094" CDS complement(2148152..2149051) /locus_tag="Alide2_2053" /inference="similar to AA sequence:KEGG:Veis_2419" /note="KEGG: vei:Veis_2419 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387944.1" /db_xref="GI:330824641" /db_xref="GeneID:10483094" /translation="MHPQRVESLSHAQRERLAYIDFRLYFFGEIGRPDLIDRFGVAPA GATRDLALYREIAPQNITFDGSNKIYRIGQAFSPLFDHASQRVLSALALGFGDGVTGA TQPLLPCESPTALSNPRMDVLAPVCRAIHAKRPVAIRYHSMSSGESERVIVPFALVDT GLRWHVRAFDRKSGEFRDFVVTRIEAPTLLDEEPQAFERPDNDIQWTRIVELDFVPHP RLERPEVIKMDYGMTDGSIRMRVRAAVAGYMLLRWSVDCSPDHRLKEEQYRLWLSDPL ALYGVENAKLAPGYQAPSSPKKR" misc_feature complement(2148188..2148952) /locus_tag="Alide2_2053" /note="Predicted transcriptional regulator [Transcription]; Region: COG2378" /db_xref="CDD:32525" gene 2149260..2149664 /locus_tag="Alide2_2054" /db_xref="GeneID:10483095" CDS 2149260..2149664 /locus_tag="Alide2_2054" /inference="protein motif:PFAM:PF00959" /note="PFAM: Glycoside hydrolase, family 24; KEGG: mms:mma_2788 phage-related lysozyme" /codon_start=1 /transl_table=11 /product="glycoside hydrolase family 24" /protein_id="YP_004387945.1" /db_xref="GI:330824642" /db_xref="GO:0003796" /db_xref="InterPro:IPR002196" /db_xref="GeneID:10483095" /translation="MKRGIEITAIPYICPAGFWTIGYGHFCDPKHPPITEAEAEAYLA RDLQTALAATLRYCPVLATEPESRIATIVDFTFNLGAGRLQTSTLRRRINQRDWSAAA TELRRWVYGGGKVLPGLFARREAEISLLDTKV" misc_feature 2149287..2149637 /locus_tag="Alide2_2054" /note="Endolysins and autolysins are found in viruses and bacteria, respectively. The ds DNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell...; Region: endolysin_autolysin; cd00737" /db_xref="CDD:29561" misc_feature 2149317..2149319 /locus_tag="Alide2_2054" /note="catalytic residues [active]" /db_xref="CDD:29561" gene complement(2149746..2150900) /locus_tag="Alide2_2055" /db_xref="GeneID:10483096" CDS complement(2149746..2150900) /locus_tag="Alide2_2055" /inference="protein motif:PFAM:PF00089" /note="KEGG: mfa:Mfla_1158 DegP2 peptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF" /codon_start=1 /transl_table=11 /product="peptidase S1 and S6 chymotrypsin/Hap" /protein_id="YP_004387946.1" /db_xref="GI:330824643" /db_xref="GO:0004252" /db_xref="GO:0005515" /db_xref="InterPro:IPR001254" /db_xref="InterPro:IPR001478" /db_xref="GeneID:10483096" /translation="MAYHDPYPQRPAPDHFVRRWLFITACVAALMLFWQFLPAIEAWF SPRQAAERTVTPRGDLAADEQATIELFEKSRGSVVYITTSQLVRDVWTRNVFSVPRGT GSGFIWDDAGHVVTNFHVIQGASEATVKLADGRDYQAALVGVSPAHDIAVLKIGVGFQ RPPAVPVGTSADLKVGQKVFAIGNPFGLDWTLTNGIVSALDRSLPGESGGVTIEHLIQ TDAAINPGNSGGPLLDSAGRLIGINTAIYSPSGASAGIGFAVPVDTVMRVVPQLIKTG KYIRPALGIEVDEQLNRRLQALTSTQGVFVLRVAPGSAAQKAGLSGITVGPEGIVPGD RITGIDGAPVDDVAKLLARLDDQKVGDVVVLSVERAGKPREVRVELQPGA" misc_feature complement(2149758..2150807) /locus_tag="Alide2_2055" /note="Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265" /db_xref="CDD:30614" misc_feature complement(2150094..2150570) /locus_tag="Alide2_2055" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" misc_feature complement(2149767..2150060) /locus_tag="Alide2_2055" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature complement(order(2149848..2149853,2149860..2149865, 2150040..2150042,2150046..2150057)) /locus_tag="Alide2_2055" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" gene complement(2150924..2151889) /locus_tag="Alide2_2056" /db_xref="GeneID:10483097" CDS complement(2150924..2151889) /locus_tag="Alide2_2056" /inference="protein motif:PFAM:PF01435" /note="PFAM: Peptidase M48; KEGG: mfa:Mfla_1159 peptidase M48, Ste24p" /codon_start=1 /transl_table=11 /product="peptidase M48 Ste24p" /protein_id="YP_004387947.1" /db_xref="GI:330824644" /db_xref="GO:0004222" /db_xref="InterPro:IPR001915" /db_xref="GeneID:10483097" /translation="MTPYGLVGRHDARSRHRWLNRFQTALLVLTLVGIAAAAGSLLFG EIGLWLALATCALTLLIEPVAASAMTLRLYGARPLRPDEAPAIWSLLRALAARAGLPN TPVPYYVPSDIVNAFATGSRRLASIALTDGLLRSLSMRELQAVLAHEVAHIAQEDLRV MGLADSISRLTNLLALLGQVALLISMPALLVGAAEINWIGLLLLAASPQLALLAQLGL SRVREFDADRMAVELTGDPHGLASALAKIERVSRSWRAWLLPGWGNPEPSWLRTHPAT EDRIARLMALAPQPSQALPYQTEYLAPRSFAPMRPPRRGLSGLWR" misc_feature complement(2151023..2151835) /locus_tag="Alide2_2056" /note="Peptidase family M48; Region: Peptidase_M48; cl12018" /db_xref="CDD:187163" gene complement(2151897..2152367) /locus_tag="Alide2_2057" /db_xref="GeneID:10483098" CDS complement(2151897..2152367) /locus_tag="Alide2_2057" /inference="similar to AA sequence:KEGG:Mfla_1160" /note="KEGG: mfa:Mfla_1160 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387948.1" /db_xref="GI:330824645" /db_xref="GeneID:10483098" /translation="MNKESGHTALDEIRSQWRLMTVYERFEQFVAITLSGVIALVIVI SLIQLIRLVFTLLVMDALNPLDHKVFQLVFGATMTLLIAMEFKHSIVKVALRKESIIQ VKTVILIAILALARKFIILEPDVDPAKVAALAGTVLALGLTYWLMRERDDRKSE" gene complement(2152443..2152883) /locus_tag="Alide2_2058" /db_xref="GeneID:10483099" CDS complement(2152443..2152883) /locus_tag="Alide2_2058" /EC_number="1.8.1.8" /inference="protein motif:TFAM:TIGR01068" /note="TIGRFAM: Thioredoxin; KEGG: dde:Dde_3416 thioredoxin; PFAM: Thioredoxin domain" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="YP_004387949.1" /db_xref="GI:330824646" /db_xref="GO:0009055" /db_xref="GO:0015035" /db_xref="InterPro:IPR005746" /db_xref="InterPro:IPR013766" /db_xref="GeneID:10483099" /translation="MSDSIHIVCPHCQSINRVPANKLAEKPNCGRCQHPLFTGEPIDL TTATFARHLERSDLPLLVDFWAPWCGPCKMMAPQFEQAASLLEPKVRLAKVNTEAEPH LAAQFGIRSIPTLILFRGGHEVARQAGAMGAQDIMRWVASQLPR" misc_feature complement(2152452..2152871) /locus_tag="Alide2_2058" /note="thioredoxin 2; Provisional; Region: PRK10996" /db_xref="CDD:182889" misc_feature complement(2152461..2152745) /locus_tag="Alide2_2058" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature complement(order(2152668..2152670,2152677..2152679)) /locus_tag="Alide2_2058" /note="catalytic residues [active]" /db_xref="CDD:48496" gene complement(2152880..2154763) /locus_tag="Alide2_2059" /db_xref="GeneID:10483100" CDS complement(2152880..2154763) /locus_tag="Alide2_2059" /EC_number="3.6.4.3" /inference="protein motif:TFAM:TIGR01241" /note="SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: dde:Dde_3415 FtsH-2 peptidase; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular" /codon_start=1 /transl_table=11 /product="ATP-dependent metalloprotease FtsH" /protein_id="YP_004387950.1" /db_xref="GI:330824647" /db_xref="GO:0004222" /db_xref="InterPro:IPR000642" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR005936" /db_xref="InterPro:IPR011546" /db_xref="GeneID:10483100" /translation="MEKKDQWNIGYWIVAGLLLLTLQNYWQAAKTVEPVPYSEFEKAL AEGRVAEVLVSDRTVTGRLKSPDSRGKTTIVATRVEPDLAERLSKYDVPYARVVESTW LRDVLSWILPAVAFFGVWFFLFRRFAEKQGMGGFLSIGKSRAKVFMEKNTGVTFADVA GVDEAKAELVEIVDFLKNPQEYGRLGARIPKGVLLVGPPGTGKTLLTKAVAGEAGVPF FSISGSEFVEMFVGVGAARVRDLFEQARGQAPAIIFIDELDALGRARGVGGPIGGHDE REQTLNQLLTEMDGFDSSVGLIILAATNRPEILDQALLRAGRFDRQVLVDRPDKKGRL DILKVHVKKVTLAQDIDLEQVAALTTGFSGADLANLVNEAALAATRRKASAVELQDFT AAIERIVAGLEKKNRVLNPKERETVAYHEMGHALVALALPGTDPVHKISIVPRGIGAL GYTLQRPTEDRFLMTRADLEHKIAVLLGGRAAEKLVFGELSTGASDDLARATDIARDM ITRFGMDEGLGYVAFEAQRPRFLDAPELVQGGCRVAESTQTRIDQAIRDIVMGVFDRA YRILEINREVLERCARELLARETLDEYSIRQLTQGLQLESPCHSGPTAGAITSSVSQG APS" misc_feature complement(2154467..2154739) /locus_tag="Alide2_2059" /note="FtsH Extracellular; Region: FtsH_ext; pfam06480" /db_xref="CDD:191539" misc_feature complement(2152970..2154373) /locus_tag="Alide2_2059" /note="ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241" /db_xref="CDD:162266" misc_feature complement(2153786..2154286) /locus_tag="Alide2_2059" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2154152..2154175) /locus_tag="Alide2_2059" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2153852..2153854,2153996..2153998, 2154149..2154172)) /locus_tag="Alide2_2059" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2153993..2154010) /locus_tag="Alide2_2059" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2153810..2153812) /locus_tag="Alide2_2059" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(2152970..2153545) /locus_tag="Alide2_2059" /note="Peptidase family M41; Region: Peptidase_M41; pfam01434" /db_xref="CDD:144872" gene complement(2154791..2156221) /locus_tag="Alide2_2060" /db_xref="GeneID:10483101" CDS complement(2154791..2156221) /locus_tag="Alide2_2060" /inference="protein motif:PFAM:PF00614" /note="KEGG: rpf:Rpic12D_0625 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase" /codon_start=1 /transl_table=11 /product="phospholipase D/transphosphatidylase" /protein_id="YP_004387951.1" /db_xref="GI:330824648" /db_xref="GO:0003824" /db_xref="InterPro:IPR001736" /db_xref="GeneID:10483101" /translation="MSDPNGLTWAATLVSLAVAIPTAGHAIIYKRDPRSATLWVLLIA LLPLAGSLLYGLFGINRYQRRARRLFPGADPAVRQDLVPTMPQAVSAPFAGLAHLVGR ATGQSLTSGNRIEPLVDGEQAYPAMLAAIESARHSVALASYIFDSQGIGAQFVDALRR AHERGVQVRVLIDDVYARWSPRSAYRALQRAGVPAATFNPTLIPARLHAAHLRNHRKL LVIDGETGFTGGMNICSPYWRPDAPEQACHDLHFRLRGPVVAHLMRCFTDDWCDTTGE RLSKGFWGEPPATADEQGTSWARGIEAGPDEALDRMRWTFMGALSAAKHSVRIWTPYF VPDQPMIAALSTAALRGVRVEVLTPANGDHPTVQWAARAHYWQVLEHGVRIFERPGPF DHSKLMLIDGQWCCLGSANWDARSLRLNFEFNVEVYDTALSTRLESLFDAARDASNEI SAMALRARPLAIRLRDGVARLFTPIL" misc_feature complement(2154794..2156203) /locus_tag="Alide2_2060" /note="cardiolipin synthetase; Reviewed; Region: cls; PRK01642" /db_xref="CDD:179315" misc_feature complement(2155406..2155870) /locus_tag="Alide2_2060" /note="Putative catalytic domain, repeat 1, of uncharacterized proteins similar to bacterial cardiolipin synthase; Region: PLDc_CLS_unchar2_1; cd09157" /db_xref="CDD:197254" misc_feature complement(order(2155475..2155477,2155526..2155528, 2155532..2155534,2155571..2155573,2155577..2155579)) /locus_tag="Alide2_2060" /note="putative active site [active]" /db_xref="CDD:197254" misc_feature complement(2155577..2155579) /locus_tag="Alide2_2060" /note="catalytic site [active]" /db_xref="CDD:197254" misc_feature complement(2154794..2155321) /locus_tag="Alide2_2060" /note="Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase; Region: PLDc_CLS_unchar2_2; cd09163" /db_xref="CDD:197260" misc_feature complement(order(2154956..2154958,2154989..2154991, 2154995..2154997,2155034..2155036,2155040..2155042)) /locus_tag="Alide2_2060" /note="putative active site [active]" /db_xref="CDD:197260" misc_feature complement(2155040..2155042) /locus_tag="Alide2_2060" /note="catalytic site [active]" /db_xref="CDD:197260" gene complement(2156239..2159088) /locus_tag="Alide2_2061" /db_xref="GeneID:10483102" CDS complement(2156239..2159088) /locus_tag="Alide2_2061" /inference="protein motif:PFAM:PF07724" /note="KEGG: mfa:Mfla_1170 ATPase AAA-2; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="ATPase AAA-2 domain-containing protein" /protein_id="YP_004387952.1" /db_xref="GI:330824649" /db_xref="GO:0005515" /db_xref="GO:0005524" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR004176" /db_xref="InterPro:IPR013093" /db_xref="InterPro:IPR019489" /db_xref="GeneID:10483102" /translation="MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKR TVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSMAADTDEVVDASFGEPAPAGTGTAR RRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLA EEGEGLAANLLRRYGLTPQALRQQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMA REGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIVEGLAQRMVAGEVPE TLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQ GGGEGGLDVANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVA QTMMILRGLRDTFEAHHKVSITEDAIIAAAELSDRYITARFLPDKAIDLLDQAAARVK LSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKHIEAKEAELKKLVEEWE RERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRA VADAVRLSRAGLREGSKPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEY GERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLLLDEIEKAHPDVYNILLQVFD DGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKGEVMDVLRGH FRPEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLAFDQTLIDHFAEE GYKPEFGARELKRLIRSELETALAREMLGGGIGKADHASARWDDKAERVVFERQEPPA KPAEPEKPDAANVAETPPSDASKPARKKKSAGGES" misc_feature complement(2156368..2158752) /locus_tag="Alide2_2061" /note="ATP-dependent chaperone ClpB; Region: chaperone_ClpB; TIGR03346" /db_xref="CDD:163223" misc_feature complement(2158576..2158722) /locus_tag="Alide2_2061" /note="Clp amino terminal domain; Region: Clp_N; pfam02861" /db_xref="CDD:190453" misc_feature complement(2158345..2158503) /locus_tag="Alide2_2061" /note="Clp amino terminal domain; Region: Clp_N; pfam02861" /db_xref="CDD:190453" misc_feature complement(2157748..2158236) /locus_tag="Alide2_2061" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2158138..2158161) /locus_tag="Alide2_2061" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2157826..2157828,2157943..2157945, 2158135..2158158)) /locus_tag="Alide2_2061" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2157940..2157957) /locus_tag="Alide2_2061" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2157775..2157777) /locus_tag="Alide2_2061" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(2156770..2157171) /locus_tag="Alide2_2061" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2157118..2157141) /locus_tag="Alide2_2061" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2156797..2156799,2156923..2156925, 2157115..2157138)) /locus_tag="Alide2_2061" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2156920..2156937) /locus_tag="Alide2_2061" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2156374..2156643) /locus_tag="Alide2_2061" /note="C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431" /db_xref="CDD:192583" gene complement(2159182..2159751) /locus_tag="Alide2_2062" /db_xref="GeneID:10483103" CDS complement(2159182..2159751) /locus_tag="Alide2_2062" /inference="protein motif:PFAM:PF00011" /note="PFAM: Heat shock protein Hsp20; KEGG: rpf:Rpic12D_0629 heat shock protein HSP20" /codon_start=1 /transl_table=11 /product="heat shock protein Hsp20" /protein_id="YP_004387953.1" /db_xref="GI:330824650" /db_xref="InterPro:IPR002068" /db_xref="GeneID:10483103" /translation="MDIDFKKLAPWNWFKKEQEEQQSTASLPVQRNDLPVAGGPVSPI LQLHREIDRLFDDAFRGFGFPTLAMPRWPSDWPGMLKPALDIQETDKQYKIALEVPGI EEKDIQITLDNDVLLVRGEKRQEQETKDGGFHRVERSYGSFQRALNLPADANQDTIKA AFKNGVLTITMDKREASTPKQGRSIPING" misc_feature complement(2159233..2159499) /locus_tag="Alide2_2062" /note="Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are...; Region: ACD_sHsps-like; cd06464" /db_xref="CDD:107221" misc_feature complement(order(2159254..2159259,2159317..2159319, 2159449..2159454,2159458..2159460,2159464..2159466, 2159485..2159499)) /locus_tag="Alide2_2062" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107221" gene complement(2159784..2160065) /locus_tag="Alide2_2063" /db_xref="GeneID:10483104" CDS complement(2159784..2160065) /locus_tag="Alide2_2063" /inference="protein motif:TFAM:TIGR01764" /note="manually curated; TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: mfa:Mfla_1172 phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory" /codon_start=1 /transl_table=11 /product="excisionase family DNA binding domain-containing protein" /protein_id="YP_004387954.1" /db_xref="GI:330824651" /db_xref="GO:0003677" /db_xref="InterPro:IPR010093" /db_xref="InterPro:IPR010260" /db_xref="GeneID:10483104" /translation="MTARQQAIFTLDELATYLKVGKRTLYRLAAHGEIPAFKVGGTWR FRQSEIDQWINDQIQAGRKKEVIRTDEQPKSAKHPVLPGRAIHSRRQAD" misc_feature complement(2159895..2160044) /locus_tag="Alide2_2063" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene complement(2160293..2160457) /locus_tag="Alide2_2064" /pseudo /db_xref="GeneID:10483105" gene complement(2160805..2161476) /locus_tag="Alide2_2065" /db_xref="GeneID:10483106" CDS complement(2160805..2161476) /locus_tag="Alide2_2065" /inference="protein motif:PFAM:PF02586" /note="PFAM: Protein of unknown function DUF159; KEGG: tin:Tint_2914 protein of unknown function DUF159" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387955.1" /db_xref="GI:330824652" /db_xref="InterPro:IPR003738" /db_xref="GeneID:10483106" /translation="MCNRYVAPDPAAIERHWQARASQPSVWAASIHPRAPGPFIRAEG GARALVVGQWGLIPFFAKMAKLPYSTNNARSEELAAKPTFRDPWKRGQRCIIPAVSFD EPCWETGKNVWWRFRRVDGAPWGLAGLWNTWADKATGELVESYTMLTLNADAHPLMRR MHKPEPDLLPDAQDKRSVIPIDADDVEQWLRGTVDEAQSLLRLAPVETFDTGPVSAAS HSSLL" misc_feature complement(2160865..2161473) /locus_tag="Alide2_2065" /note="Uncharacterised ACR, COG2135; Region: DUF159; cl03646" /db_xref="CDD:194657" gene 2161532..2162017 /locus_tag="Alide2_2066" /db_xref="GeneID:10483107" CDS 2161532..2162017 /locus_tag="Alide2_2066" /inference="protein motif:PFAM:PF00717" /note="PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: tin:Tint_2913 peptidase S24/S26A/S26B, conserved region" /codon_start=1 /transl_table=11 /product="peptidase S24/S26A/S26B" /protein_id="YP_004387956.1" /db_xref="GI:330824653" /db_xref="InterPro:IPR019759" /db_xref="GeneID:10483107" /translation="MHSIKAHPTDTRARLLGPAQIDAHVLRLPVGAVHVALGFPSPAE DFEDDRVDLNEMLVRNPPATFLYRAEGWSMIQAGICDGDVLVVDRSVRPQHGDVVIAM WDGNAPVCKVLHVCGDHVELHGRNPAIASIVLPPDTEVEIFAVVGVARQMRREHGRVG R" misc_feature 2161724..2161972 /locus_tag="Alide2_2066" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature order(2161748..2161750,2161862..2161864) /locus_tag="Alide2_2066" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 2162017..2163303 /locus_tag="Alide2_2067" /db_xref="GeneID:10483108" CDS 2162017..2163303 /locus_tag="Alide2_2067" /EC_number="2.7.7.7" /inference="protein motif:PRIAM:2.7.7.7" /note="KEGG: tin:Tint_2912 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like" /codon_start=1 /transl_table=11 /product="DNA-directed DNA polymerase" /protein_id="YP_004387957.1" /db_xref="GI:330824654" /db_xref="InterPro:IPR001126" /db_xref="GeneID:10483108" /translation="MFALIDGNNFYASCERVFQPELRGRPLVVLSNNDGCAIARSDEA KALGVKMGQAIHQVAPDVRKQLAVRSANFALYGDMSARVLAILRDAAPRVEPYSIDES FLDLTGMRDREAFARELHERVHRWTGIPNCVGIGATKTLAKLGNFVAKSSVRKPGSYP ASLSGVADLAALSPQALAEVLTATPVGELWGVGPRWSARLRELGIATALQLRDAQRDL ILERFGVVLSRTQRELSGDPCLALEEVEPDRQQIMVSRSFGERVENHQSISEAFATFA VRACEKLRARGLVTGAIGIFANTDHFRLELRQHHPQRTTDLPRATSDTRVVLDTLRRM QRGFLKDGFAYKKAGVWLMDLGRPEQIQPDLFAPSTIGNDKLMSAMDAINRRYGRGTV GLGATGWRERPQWGMRQANLSLHFTTSLRDLPRAHC" misc_feature 2162017..2163294 /locus_tag="Alide2_2067" /note="DNA polymerase V subunit UmuC; Reviewed; Region: umuC; PRK03609" /db_xref="CDD:179607" misc_feature 2162023..2163078 /locus_tag="Alide2_2067" /note="umuC subunit of DNA Polymerase V; Region: PolY_Pol_V_umuC; cd01700" /db_xref="CDD:176454" misc_feature order(2162032..2162037,2162044..2162049,2162140..2162142, 2162149..2162151,2162314..2162319,2162464..2162466) /locus_tag="Alide2_2067" /note="active site" /db_xref="CDD:176454" misc_feature order(2162308..2162310,2162317..2162319,2162584..2162604, 2162689..2162691,2162764..2162781,2162860..2162862, 2162917..2162931,2162935..2162937) /locus_tag="Alide2_2067" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176454" gene complement(2163300..2163764) /locus_tag="Alide2_2068" /db_xref="GeneID:10483109" CDS complement(2163300..2163764) /locus_tag="Alide2_2068" /inference="similar to AA sequence:KEGG:MCA2632" /note="KEGG: mca:MCA2632 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387958.1" /db_xref="GI:330824655" /db_xref="GeneID:10483109" /translation="MSKKHRGRFEGESIVRHLPSPAGGVKLETFVPWRLVQRGVKKEV ITPLDAPQAFREQAEAERQTRAAARDTPMMRALGLAHHWQRLLDEQRAASVAEIAEAE GIDSSQVHRLMRLTLLAPDVVEKLVGQPGLTVEKVLGRPWPYGWREQVRLLP" gene complement(2163761..2164147) /locus_tag="Alide2_2069" /db_xref="GeneID:10483110" CDS complement(2163761..2164147) /locus_tag="Alide2_2069" /inference="similar to AA sequence:KEGG:MCA2633" /note="KEGG: mca:MCA2633 prophage LambdaMc01, site-specific recombinase resolvase family protein, truncation" /codon_start=1 /transl_table=11 /product="site-specific recombinase resolvase family protein, truncation" /protein_id="YP_004387959.1" /db_xref="GI:330824656" /db_xref="GeneID:10483110" /translation="MKDGQLETFVPMTLRRRGVQRLVQHPVVEEREAHDSALIEGVGR AFHWQRLLDTGEMESGSAIARSEGLHQSVINELLRLTLLAPDIIEQLMAGRQPRRMSL IWFQRHPLPVDWEAQRAIVRGFEGPA" gene complement(2164144..2165523) /locus_tag="Alide2_2070" /db_xref="GeneID:10483111" CDS complement(2164144..2165523) /locus_tag="Alide2_2070" /inference="protein motif:PFAM:PF00239" /note="KEGG: mca:MCA2634 prophage LambdaMc01, site-specific recombinase resolvase family protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal" /codon_start=1 /transl_table=11 /product="resolvase domain-containing protein" /protein_id="YP_004387960.1" /db_xref="GI:330824657" /db_xref="GO:0000150" /db_xref="GO:0003677" /db_xref="InterPro:IPR006119" /db_xref="InterPro:IPR011109" /db_xref="GeneID:10483111" /translation="MAETASPKARKRCAVYCRVSSDERLDQEFNSIDAQKEAGHAYIV SQRAEGWIPVADDYDDPGFSGGNTERPALKRLLADIQDGRIDIVVVYKIDRLTRSLTD FSKMVDVFERQSVSFVSVTQQFNTTTSMGRLTLNILLSFAQFEREVTGERIRDKIAAA KKKGMWMGGVPTIGYDVVNRLLVINKDEAAVVRRMFEEMLTIGSPTQIAARLSDEGVT TKAWTTQDGRVRTGTRIDKKYIHKVLRNRIYLGELSNRGTWYPGAHQPIIEQELWDKV HAVLARNSHERGVDTKIRSRNDALLRGLLYAPSGERMYPTYSRKNGRKYQYYVSKSES RFGAPGKSYERLPAAEIEAAVVAQIRTVLTSPESIASVVRHIQNNGGQVDEASTVMAM ARLNDVWDQLFPVERHRVANLMIERVDLVHTDEMQGIRVRWRELGWDTLIGEFAPRGV GAELLEVEA" misc_feature complement(2164792..2165493) /locus_tag="Alide2_2070" /note="Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961" /db_xref="CDD:32144" misc_feature complement(2165059..2165478) /locus_tag="Alide2_2070" /note="Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768" /db_xref="CDD:58117" misc_feature complement(order(2165230..2165232,2165239..2165244, 2165464..2165466,2165470..2165472)) /locus_tag="Alide2_2070" /note="catalytic residues [active]" /db_xref="CDD:58117" misc_feature complement(2165464..2165466) /locus_tag="Alide2_2070" /note="catalytic nucleophile [active]" /db_xref="CDD:58117" misc_feature complement(order(2165089..2165091,2165101..2165106, 2165110..2165115,2165245..2165247)) /locus_tag="Alide2_2070" /note="Presynaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(2165083..2165085,2165092..2165094, 2165101..2165106,2165113..2165118,2165125..2165127, 2165209..2165214,2165227..2165229)) /locus_tag="Alide2_2070" /note="Synaptic Antiparallel dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(2165068..2165070,2165080..2165082, 2165089..2165091,2165101..2165103,2165110..2165115, 2165122..2165127,2165152..2165160)) /locus_tag="Alide2_2070" /note="Synaptic Flat tetramer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(2165068..2165070,2165080..2165082, 2165089..2165091,2165101..2165103,2165110..2165112, 2165158..2165160)) /locus_tag="Alide2_2070" /note="Synaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:58117" misc_feature complement(order(2165065..2165070,2165086..2165088)) /locus_tag="Alide2_2070" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:58117" misc_feature complement(2164675..2164965) /locus_tag="Alide2_2070" /note="Recombinase; Region: Recombinase; pfam07508" /db_xref="CDD:191763" gene complement(2165523..2165969) /locus_tag="Alide2_2071" /db_xref="GeneID:10483112" CDS complement(2165523..2165969) /locus_tag="Alide2_2071" /inference="protein motif:PFAM:PF11149" /note="PFAM: Protein of unknown function DUF2924; KEGG: mca:MCA2635 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387961.1" /db_xref="GI:330824658" /db_xref="InterPro:IPR021322" /db_xref="GeneID:10483112" /translation="MNENPSSIAAQISDLGHLPMAELWTLWDRYFERRPPHPNRTHVE SRFAYKLQEQAFGGLAAETRQRLEAIGAKHSRIKLRAKPRALNFAPGTVLLREWATRD HRVTVTAEGLFEYEGRCFKSLTAVARQITGQHRSGPEFFGLLKGGN" misc_feature complement(2165541..2165948) /locus_tag="Alide2_2071" /note="Protein of unknown function (DUF2924); Region: DUF2924; pfam11149" /db_xref="CDD:192712" gene complement(2165966..2166160) /locus_tag="Alide2_2072" /db_xref="GeneID:10483113" CDS complement(2165966..2166160) /locus_tag="Alide2_2072" /inference="similar to AA sequence:KEGG:MCA2636" /note="KEGG: mca:MCA2636 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387962.1" /db_xref="GI:330824659" /db_xref="GeneID:10483113" /translation="MTTIELPSPSEMTPAARAAEVSSILAAAIVRTLVAPEATEGAVR LGFLPDQRVHATPSQPEKLS" gene 2166340..2166618 /locus_tag="Alide2_2073" /db_xref="GeneID:10483114" CDS 2166340..2166618 /locus_tag="Alide2_2073" /inference="protein motif:PFAM:PF01381" /note="KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004387963.1" /db_xref="GI:330824660" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10483114" /translation="MSFGQFIRKTREAKEIQMNDFARQLEISPAYWSRIERDMEKPPK DELIRKAAEILGISADDAFVEASRLPPDIRDDVGNLVRMYRRNVTEKK" misc_feature 2166349..2166528 /locus_tag="Alide2_2073" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene 2166619..2166882 /locus_tag="Alide2_2074" /db_xref="GeneID:10483115" CDS 2166619..2166882 /locus_tag="Alide2_2074" /inference="similar to AA sequence:KEGG:NIDE0076" /note="KEGG: nde:NIDE0076 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387964.1" /db_xref="GI:330824661" /db_xref="GeneID:10483115" /translation="MAVLTLDYRCCNRKLPLYIKHAEVERIAATARQQLVVDSIDSVS FDALRQISGLKINGIDFALEVSTVDFHAKLTHHFHRILTHPGS" gene complement(2166892..2167005) /locus_tag="Alide2_2075" /pseudo /db_xref="GeneID:10483116" gene 2167055..2167378 /locus_tag="Alide2_2076" /db_xref="GeneID:10483117" CDS 2167055..2167378 /locus_tag="Alide2_2076" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004387965.1" /db_xref="GI:330824662" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10483117" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADAQRIKELEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature 2167055..2167264 /locus_tag="Alide2_2076" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 2167375..2168289 /locus_tag="Alide2_2077" /db_xref="GeneID:10483118" CDS 2167375..2168289 /locus_tag="Alide2_2077" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004387966.1" /db_xref="GI:330824663" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10483118" /translation="MKNYIDRHRDDYGVEPICRVLQMAPSCYWRHAARQRNPQLRSQR VQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIAVARCTVERLMRAMGLQGARRG KTVRTTTPDTSAPCPLDHVNRQFKASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAVSDTSTEVST" misc_feature 2167435..2168271 /locus_tag="Alide2_2077" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature 2167750..2168106 /locus_tag="Alide2_2077" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(2168352..2169278) /locus_tag="Alide2_2078" /db_xref="GeneID:10483119" CDS complement(2168352..2169278) /locus_tag="Alide2_2078" /EC_number="3.5.1.2" /inference="protein motif:HAMAP:MF_00313" /note="PFAM: Glutaminase; TIGRFAM: Glutaminase; HAMAP: Glutaminase; KEGG: atu:Atu1859 glutaminase" /codon_start=1 /transl_table=11 /product="glutaminase" /protein_id="YP_004387967.1" /db_xref="GI:330824664" /db_xref="InterPro:IPR015868" /db_xref="GeneID:10483119" /translation="MGHAALETLQGFLVGLDARMKRAHKRGRVAHYIPQLASVDVHQF GISVCLASGERLSAGDAATPFSIQSISKVFSLAIALGRHGDRLWKRVGKEPSNYTFNS VIELEQEGGKPRNPFVNAGALVTTDAMLDAPDAGCGLDELMDFVRTAAGDDRISIDEQ VAASEYRTAYRNFSLAYFLRSCGNLHMECERLLQIYCRQCAITMNCEQLASAGRFLAG FDSAAHLLNPAQARSINALMLLAGHYDGSGDFAYSVGFPGKSGVGGGILAVVPGHASI AVWSPGLNAFGNSLLGTRALQELSEFTGWSVF" misc_feature complement(2168355..2169206) /locus_tag="Alide2_2078" /note="Glutaminase; Region: Glutaminase; cl00907" /db_xref="CDD:193972" gene complement(2169282..2170469) /locus_tag="Alide2_2079" /db_xref="GeneID:10483120" CDS complement(2169282..2170469) /locus_tag="Alide2_2079" /EC_number="3.5.1.32" /inference="protein motif:TFAM:TIGR01891" /note="TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004387968.1" /db_xref="GI:330824665" /db_xref="GO:0016787" /db_xref="InterPro:IPR002933" /db_xref="InterPro:IPR010168" /db_xref="InterPro:IPR011650" /db_xref="GeneID:10483120" /translation="MTVQDTLQAVRAHEDEFIALRRDIHQHPELPFEELRTSDLVAAR LRDWGYHVERGLGGTGVVGQLKRGDGTRTLGLRADMDALPIQETTGLQYASRNQGVMH ACGHDGHTAMLLAAAKVLAEQGDFSGTLNLIFQPAEEYGTSDCGAVRMMNDGLFDKYP CDAIFSMHNMPGWPQGHLIFREGPMMASSDKVYITLVGHGGHGAVPHKAADPVVAAAS LVMALQTVVSRNVDPLQAAVVTVGVLQSGRANNVIPDSAHLELSVRALDPEVRSLLQQ RITEIVHAQAQCFGVKAEIDYRRGYAALINSKDETDFARQIGTELVGAERVVPQAPPL TGSEDFAFMLEKRPGCYLLIGNGDGDKLGACMVHNPGYDFNDANLAIGAAYWALLARR YLA" misc_feature complement(2169324..2170460) /locus_tag="Alide2_2079" /note="Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473" /db_xref="CDD:31662" misc_feature complement(2169324..2170427) /locus_tag="Alide2_2079" /note="M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666" /db_xref="CDD:193542" misc_feature complement(order(2169366..2169368,2169966..2169968, 2170053..2170055,2170152..2170154,2170158..2170160)) /locus_tag="Alide2_2079" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193542" misc_feature complement(order(2169684..2169692,2169708..2169710, 2169714..2169719,2169729..2169749,2169798..2169800, 2169807..2169809,2169816..2169818,2169828..2169833, 2169897..2169899)) /locus_tag="Alide2_2079" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193542" gene complement(2170507..2171847) /locus_tag="Alide2_2080" /db_xref="GeneID:10483121" CDS complement(2170507..2171847) /locus_tag="Alide2_2080" /inference="protein motif:PFAM:PF00083" /note="PFAM: General substrate transporter; KEGG: rme:Rmet_5758 major facilitator protein family permease" /codon_start=1 /transl_table=11 /product="general substrate transporter" /protein_id="YP_004387969.1" /db_xref="GI:330824666" /db_xref="GO:0005215" /db_xref="InterPro:IPR005828" /db_xref="GeneID:10483121" /translation="MGIQNSSMGDVALSPTSQGASNISTAATSKVQPRVVAATVAGNA LEFFDFTTYAFFAVYIGQTFFPADEPLVTVMLSVAVFGVGFITRPLGGLLIGAFADRA GRKPAMLLTIALITVGTIGMALTPSYASIGLAAPIIVIACRLVQGLALGGEVGPSTTY LIEIAPQGRRGLYGSWQLASQGIASLAAGIVGIVLTLALSKEQMLAWGWRIPFLLGLA LIPIAVFLRRHMPESLEQPTHSGPIKSPLADIRHHLRPIMLALMVILGVTISTYAAIY MTTYAVTTLKLSATIAMSATIVFGVATWAGALLGGWLSDLYGRKPVMLWARVALFVLV YPAYMLLIEHTSVATLALATALLALLTGIGGAPTLVAIPELFPGHVRALGLSIAYAFG VALFGGTAQLVITWLIKVTDNPAAPALYVLITSLIAIVGILLMRETGGDKELQK" misc_feature complement(2170543..2171742) /locus_tag="Alide2_2080" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(2170564..2171724) /locus_tag="Alide2_2080" /note="metabolite-proton symporter; Region: 2A0106; TIGR00883" /db_xref="CDD:188094" misc_feature complement(order(2170657..2170659,2170666..2170668, 2170672..2170674,2170681..2170686,2170693..2170698, 2170729..2170731,2170738..2170743,2170753..2170755, 2170762..2170767,2170774..2170776,2170927..2170929, 2170939..2170941,2170948..2170950,2170960..2170962, 2170972..2170974,2171014..2171016,2171029..2171034, 2171041..2171043,2171293..2171295,2171311..2171316, 2171323..2171328,2171362..2171364,2171371..2171376, 2171383..2171388,2171395..2171400,2171560..2171565, 2171569..2171574,2171584..2171586,2171593..2171598, 2171605..2171607,2171674..2171679,2171683..2171691, 2171698..2171700)) /locus_tag="Alide2_2080" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 2171974..2172876 /locus_tag="Alide2_2081" /db_xref="GeneID:10483122" CDS 2171974..2172876 /locus_tag="Alide2_2081" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4525 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387970.1" /db_xref="GI:330824667" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10483122" /translation="MNLRHLEYLLAVADTGSFSRAAERCHITQSALSRSIQTLEDDFG ARLIDRMGKRNELTPFGQTVASRARRMVLDAVELKRSAQLLQDGYLGVIRIGLGAGPT ALLMQPFLRYMACMHPGVQVSLESGPPELQTRRLRERGFDALVVDLRSVTPADDLLIE DLGQMRGGFICRVGHPLTKFNTPITFAHLQRYPLASTSLNPELARLLITRYGPAADPQ VAVTLRCNDINSLLHAVHGSDAVFLGLISPAREAIANGSLVELPITPALNEGARFAFV TLADRTEAPAMGIFRQFVAEHLHD" misc_feature 2171974..2172867 /locus_tag="Alide2_2081" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 2171980..2172159 /locus_tag="Alide2_2081" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2172250..2172855 /locus_tag="Alide2_2081" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature order(2172292..2172297,2172301..2172306,2172313..2172315, 2172325..2172327,2172331..2172351,2172637..2172654, 2172670..2172675,2172679..2172684) /locus_tag="Alide2_2081" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(2172945..2173742) /locus_tag="Alide2_2082" /db_xref="GeneID:10483123" CDS complement(2172945..2173742) /locus_tag="Alide2_2082" /inference="similar to AA sequence:KEGG:Sde_2785" /note="KEGG: sde:Sde_2785 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387971.1" /db_xref="GI:330824668" /db_xref="GeneID:10483123" /translation="MRYPVMTEKHVADRWQVSLKTLRRWRLDGQGPIWHKLFRHVRYH EVDILEFERRSAQFLMTLLGIDREFKPADEDVGAAFDAQGSRYLTAKDTAEAASLPLH IFQDRAERERKQIPHLMLGGNLRFSLQAILEPVPVVRHQPGRQRRQQRLAIPLQPSSA QRWRLRPTCWACNTTASTSTLAFGSGLGMCRTSTPTSAACAAGCGASRAWPPSTWRLT WAGFACWIARPDLPRSPRQCWFWLSGLELIRTFREKSLTFLLLLSKR" misc_feature complement(2173581..2173730) /locus_tag="Alide2_2082" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:194374" gene complement(2173877..2174371) /locus_tag="Alide2_2083" /db_xref="GeneID:10483124" CDS complement(2173877..2174371) /locus_tag="Alide2_2083" /inference="similar to AA sequence:KEGG:AFE_1417" /note="manually curated; KEGG: afr:AFE_1417 acetyltransferase, GNAT family" /codon_start=1 /transl_table=11 /product="GNAT family acetyltransferase" /protein_id="YP_004387972.1" /db_xref="GI:330824669" /db_xref="GeneID:10483124" /translation="MSLDLVAPQPLTSDHHCIDFSCGEPVLDEWLKRRAMANQISGAS RTFVAADKEHRVYGYYAMAAGAVSHQLATGSVRRNMPDPVPVMVLARLAVDTQAQGIK LGGSLLQDAVNRAVNVAQNTGVRALLVHALHERAKLFYEYYGFQASPADPLVLMLRLS QAKP" misc_feature complement(2173934..>2174098) /locus_tag="Alide2_2083" /note="Acetyltransferases [General function prediction only]; Region: RimI; COG0456" /db_xref="CDD:30804" gene complement(2174368..2174634) /locus_tag="Alide2_2084" /db_xref="GeneID:10483125" CDS complement(2174368..2174634) /locus_tag="Alide2_2084" /inference="protein motif:PFAM:PF08681" /note="PFAM: Protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387973.1" /db_xref="GI:330824670" /db_xref="InterPro:IPR014795" /db_xref="GeneID:10483125" /translation="MRAAAINLRALPEQRDLIDHAANLLGKNRSDFMLEAACERAQSV VLDQVHFTLDADKFQQFVDLLDAPPQPNTGLERLFALKPVWNKV" misc_feature complement(2174374..2174634) /locus_tag="Alide2_2084" /note="Protein of unknown function (DUF1778); Region: DUF1778; cl01845" /db_xref="CDD:154623" gene complement(2174865..2176121) /locus_tag="Alide2_2085" /db_xref="GeneID:10483126" CDS complement(2174865..2176121) /locus_tag="Alide2_2085" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1692 major facilitator superfamily transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004387974.1" /db_xref="GI:330824671" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10483126" /translation="MTSPDTPRWYFGWNIVAAATVLTTLTVGLRLGLGPLFLPMAEDL GFSRSMLSSIVAVGMLCYGAATPLAGWLVARRGTRFVLLAGTVMLVGSTLWAVTARTP LQLLLSFGILMSIGAGFTSPVALTPVISRWFNRRRGMALFFLSTGSMAGIAIMTPALG LALQHASWQATLLGFAVLFAAITVPAALFLIRDEAPLDGDAPLPGAHRAANPVVPVGQ HYTVLQAMRTSTFLKITLGMFACGFSMNLLGTHGMPMLMDHGFDATTSALGIGLIGLV AIPSTLVLGRLADRLPRRKLLAAIYCVRGVGFFSLLLAGSTLELYGTSVIGGIAWAGS IALSSAILADVYGVRLVGVLYGWTYVGHQVGAMISSWLGGWGYEHFGTHWLAFGLSGA LLMMAAGVALLLPGRRPPLPAARATA" misc_feature complement(2174970..2176004) /locus_tag="Alide2_2085" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(2175024..2175026,2175033..2175038, 2175045..2175050,2175057..2175062,2175093..2175095, 2175102..2175107,2175117..2175119,2175126..2175131, 2175138..2175140,2175279..2175281,2175291..2175293, 2175300..2175302,2175312..2175314,2175324..2175326, 2175363..2175365,2175372..2175377,2175384..2175389, 2175396..2175398,2175666..2175668,2175684..2175689, 2175696..2175701,2175735..2175737,2175744..2175749, 2175756..2175761,2175768..2175773,2175912..2175917, 2175921..2175926,2175936..2175938,2175945..2175950, 2175957..2175959)) /locus_tag="Alide2_2085" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 2176305..2177096 /locus_tag="Alide2_2086" /db_xref="GeneID:10483127" CDS 2176305..2177096 /locus_tag="Alide2_2086" /EC_number="1.1.1.100" /inference="protein motif:PRIAM:1.1.1.100" /note="KEGG: dia:Dtpsy_2008 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-oxoacyl-(acyl-carrier-protein) reductase" /protein_id="YP_004387975.1" /db_xref="GI:330824672" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10483127" /translation="MARTVQQLFDLSGKTALVTGGSRGLGLQMAQALGEAGARIMLSS RKAEDLEQAVAELQAAGIDARWIAADCAREDDIQRLASETLQRMGDVDILVNNAGATW GAPAEDHPLAAWDKVMNLNVRGYFLLSQAIAKHSMIPRRGGRIINVASIAGLAGNPFE MKTIAYNTSKGAVLNFTRALAGEWGVYGICVNAICPGFFKTKMTTVLIETLSEEKMAT HAPLRRLGDDEDLKGITLLYASEAGKHITGQWLAVDGGVSAILGG" misc_feature 2176308..2177084 /locus_tag="Alide2_2086" /note="gluconate 5-dehydrogenase; Provisional; Region: PRK08213" /db_xref="CDD:181295" misc_feature 2176329..2177081 /locus_tag="Alide2_2086" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(2176362..2176364,2176368..2176373,2176377..2176379, 2176434..2176442,2176593..2176601,2176746..2176754, 2176800..2176802,2176812..2176814,2176890..2176901) /locus_tag="Alide2_2086" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(2176665..2176667,2176752..2176754,2176800..2176802, 2176812..2176814) /locus_tag="Alide2_2086" /note="active site" /db_xref="CDD:187535" gene 2177160..2177585 /locus_tag="Alide2_2087" /db_xref="GeneID:10483128" CDS 2177160..2177585 /locus_tag="Alide2_2087" /inference="protein motif:TFAM:TIGR00369" /note="KEGG: ajs:Ajs_1696 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily" /codon_start=1 /transl_table=11 /product="phenylacetic acid degradation-like protein" /protein_id="YP_004387976.1" /db_xref="GI:330824673" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10483128" /translation="MLDFGADIPFVKELGFTLRRMHGGESELHYQARPEHTNSFGVMH GGAVMTLLDVAMATAARSDTLDTGVVTIEMKTSFMRPARGPMVARGKLIQRTRSMAFA EAWVYDAEGRLCSQSTGTFKYVPRAQPAAGQGGGAISTD" misc_feature 2177199..2177525 /locus_tag="Alide2_2087" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature order(2177286..2177288,2177370..2177372,2177391..2177402) /locus_tag="Alide2_2087" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature order(2177289..2177291,2177295..2177297,2177304..2177306, 2177373..2177387,2177391..2177393) /locus_tag="Alide2_2087" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature order(2177292..2177294,2177316..2177321,2177328..2177333, 2177370..2177372) /locus_tag="Alide2_2087" /note="PHB binding site; other site" /db_xref="CDD:48038" gene 2177679..2178695 /locus_tag="Alide2_2088" /db_xref="GeneID:10483129" CDS 2177679..2178695 /locus_tag="Alide2_2088" /EC_number="1.3.1.74" /inference="protein motif:PRIAM:1.3.1.74" /note="PFAM: Alcohol dehydrogenase, C-terminal; KEGG: ajs:Ajs_1697 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase" /codon_start=1 /transl_table=11 /product="2-alkenal reductase" /protein_id="YP_004387977.1" /db_xref="GI:330824674" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR020843" /db_xref="GeneID:10483129" /translation="MPRNTQILLDNRPRGQASPDNFRLVVGDTPALRDGQVLVRHHYL SLDPYMRGRMNEGKSYAACQPLGEVMIGGTVGEVAESHHPAYAVGDKVVGMGGWQEWS VVDGDAPGMLRKVDTRHVPLSYYLGAVGMPGVTAWYGLVRIIDPRPGQTLVVSAASGA VGSAFGALAKARGCRVVGIAGGPDKCRYVTEELGFDACIDHRAHGDLASMSKALKQAC HDGIDGHFENVGGYILDAVLLRANAFARVALCGMIAGYDGQPLPLANPALILINRMRI EGFIVSEHMEVWPEALAELGGLVASGRLRPRETIAQGLAAAPQAFLDLLQGRNFGKQL VKLI" misc_feature 2177685..2178689 /locus_tag="Alide2_2088" /note="Putative NADP-dependent oxidoreductases [General function prediction only]; Region: COG2130" /db_xref="CDD:32313" misc_feature 2177688..2178683 /locus_tag="Alide2_2088" /note="Prostaglandin dehydrogenases; Region: PGDH; cd05288" /db_xref="CDD:176190" misc_feature order(2177820..2177822,2178069..2178071,2178081..2178083, 2178153..2178161,2178216..2178221,2178231..2178233, 2178279..2178281,2178360..2178365,2178426..2178440, 2178444..2178446,2178513..2178521,2178648..2178653, 2178657..2178659,2178663..2178665) /locus_tag="Alide2_2088" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176190" misc_feature order(2177823..2177825,2178444..2178446,2178522..2178524) /locus_tag="Alide2_2088" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176190" misc_feature order(2177832..2177834,2177844..2177846,2178408..2178410, 2178423..2178434,2178441..2178443,2178483..2178488, 2178495..2178518,2178525..2178527) /locus_tag="Alide2_2088" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176190" gene 2178772..2179695 /locus_tag="Alide2_2089" /db_xref="GeneID:10483130" CDS 2178772..2179695 /locus_tag="Alide2_2089" /inference="similar to AA sequence:KEGG:Ajs_1699" /note="KEGG: ajs:Ajs_1699 putative glutathione S-transferase-related protein" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase-like protein" /protein_id="YP_004387978.1" /db_xref="GI:330824675" /db_xref="GeneID:10483130" /translation="MTELILHHYPASPFAHKARCVLGFKRLAWRSVIVPSVMPKPDVV ALTGGYRRTPFLQIGADIYCDTALICDVLEHLRPEPTLYPPHLKGVSRVFAQWADTML FTAAMAYNLQPRAAEALFAGFPEGAAQAFSADRRAMGMAHPHPQDAAAAYRSYLRRIA NMVEEHDFLFGSEPCVADFAAYHPLWFTRQCVPVMADILSATPAVLEWMDRLAALGQG RAEKLSAQDAITVAAGAVPQPLLPEVFQDEHGIALGSHVSIAAESFGTEPTVGLLVAA TRTRYTLARTDPRAGDLHVHFPRIGYVLRPA" misc_feature 2178781..2179437 /locus_tag="Alide2_2089" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature 2178781..2178993 /locus_tag="Alide2_2089" /note="Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic...; Region: GST_N_family; cd00570" /db_xref="CDD:48493" misc_feature order(2178811..2178813,2178817..2178822,2178826..2178831, 2178838..2178843,2178970..2178972,2178979..2178984) /locus_tag="Alide2_2089" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48493" misc_feature order(2178811..2178813,2178925..2178933,2178964..2178969) /locus_tag="Alide2_2089" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48493" misc_feature order(2178925..2178927,2178961..2178966,2178970..2178975, 2178982..2178984) /locus_tag="Alide2_2089" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48493" misc_feature <2179207..2179407 /locus_tag="Alide2_2089" /note="Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and...; Region: GST_C_family; cd00299" /db_xref="CDD:48103" misc_feature order(2179297..2179299,2179306..2179311,2179318..2179320, 2179330..2179332) /locus_tag="Alide2_2089" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48103" gene complement(2179775..2180368) /locus_tag="Alide2_2090" /db_xref="GeneID:10483131" CDS complement(2179775..2180368) /locus_tag="Alide2_2090" /inference="protein motif:PFAM:PF07603" /note="PFAM: Protein of unknown function DUF1566; KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387979.1" /db_xref="GI:330824676" /db_xref="InterPro:IPR011460" /db_xref="GeneID:10483131" /translation="MFECRFALVLCAALALPAAAAPRGDAGAAAPAQAAQPPALSVSP DGTLVIDQRARLAWPRCVEGMRWTGSHCAGLARLLTYGEAQALARQRWKDSGVAWRLP RVNELRRLVNRSAQPPSVDQRLFPATPRDWHWTGTASVNTGSVNPYAYGNVMRGGAGE SSMTVQQSWAVDMASGQARGDVGRGTRLVVRLVRPAP" sig_peptide complement(2180306..2180368) /locus_tag="Alide2_2090" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.939 at residue 21" misc_feature complement(2180033..2180224) /locus_tag="Alide2_2090" /note="Protein of unknown function (DUF1566); Region: DUF1566; pfam07603" /db_xref="CDD:148943" gene 2180857..2182260 /locus_tag="Alide2_2091" /db_xref="GeneID:10483132" CDS 2180857..2182260 /locus_tag="Alide2_2091" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1703 major facilitator superfamily transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004387980.1" /db_xref="GI:330824677" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10483132" /translation="MSARPGIGPVIDDGLAPSARRQAMLVIILGLTLAVLDTSLVNLA LPDIARQLQSNAAQSIWVVNAYQLATLIVLLPLAALGERMGYRRVYLVGIALFSAASV GAMLASSMLALIVARALQGLGAAGVMAVNAALVRLIYPRAQLGQGMAINSLVVATASM AGPSVAAAILSVASWPWLFAMNLPLGLGIWWLGRRALPANPPSEHDGPRFSAIDVLLN GTMFTLIFLGGAQLGVRGQAQGAGGVAGGWLLAAGLAVGAVFLRRQWRLAAPLFPVDL LRIPVFALSMGSSVGAFCAQMLGFLALPFLLLEAQGRSHLEAGLLITAWPLATALVAP LAGRMIGRYPDGLLGGIGMAVFAAGLLSLGLLPAQPADWNVVWRMALCGAGFALFQSP NNHTIVSSAPLHRSGAASGMLGTARLTGQTLGAVVLAAIFALRPGHDGSAESLALLLA AGCAFAAGVCSSLRVRA" misc_feature 2180923..2182128 /locus_tag="Alide2_2091" /note="drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711" /db_xref="CDD:129794" misc_feature 2180926..>2181453 /locus_tag="Alide2_2091" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(2180968..2180970,2180977..2180985,2180989..2180994, 2181043..2181045,2181052..2181057,2181064..2181066, 2181076..2181081,2181085..2181090,2181226..2181231, 2181238..2181243,2181250..2181255,2181262..2181264, 2181298..2181303,2181310..2181315,2181331..2181333) /locus_tag="Alide2_2091" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 2182260..2183735 /locus_tag="Alide2_2092" /db_xref="GeneID:10483133" CDS 2182260..2183735 /locus_tag="Alide2_2092" /EC_number="4.1.99.3" /inference="protein motif:PRIAM:4.1.99.3" /note="KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal" /codon_start=1 /transl_table=11 /product="deoxyribodipyrimidine photo-lyase" /protein_id="YP_004387981.1" /db_xref="GI:330824678" /db_xref="InterPro:IPR005101" /db_xref="InterPro:IPR006050" /db_xref="GeneID:10483133" /translation="MQQGATASALVWLRRDLRCDDHAALYHALRRFGRVYCAFVFDTD ILDALPTRSDRRVEFIHASVLELHQGLAELAARSGAPGGGLIVRHGPAPECIVRLARS LGVQEVLANRDYEPQAIERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGV FTPYRRAWLQRLDAFQLTPYPVASHARHLAAPPAGECLPTLQELGFARTNLHELPLPT GMRGAQLLLQDFMPRMAAYHEARDYPGRKGVSYLSVHLRFGTVSIRQLAALAAAQAAQ GCEGAQAWLSELAWRDFYFMILWHHPQVATQSFKPVYDRVQWDDAPELWQAWCGARTG YPLVDAAMRQLHQTGYMHNRLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNG GWQWAASTGCDAQPWFRIFNPVTQSQRFDPQGRFIRCYLPELARVPDAHIHFPAAMGP LELAACGLRLGVDYPLPVVDHARARERTLMRFHFLGASEGG" misc_feature 2182275..2183714 /locus_tag="Alide2_2092" /note="Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]; Region: PhrB; COG0415" /db_xref="CDD:30764" misc_feature 2182284..2182805 /locus_tag="Alide2_2092" /note="DNA photolyase; Region: DNA_photolyase; pfam00875" /db_xref="CDD:189751" misc_feature 2182914..2183705 /locus_tag="Alide2_2092" /note="FAD binding domain of DNA photolyase; Region: FAD_binding_7; pfam03441" /db_xref="CDD:146197" gene complement(2183740..2184300) /locus_tag="Alide2_2093" /db_xref="GeneID:10483134" CDS complement(2183740..2184300) /locus_tag="Alide2_2093" /inference="similar to AA sequence:KEGG:Ajs_1629" /note="KEGG: ajs:Ajs_1629 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387982.1" /db_xref="GI:330824679" /db_xref="GeneID:10483134" /translation="MPAPARDTLYAGEEYHRGGTRTAAQLRVSHLAPLMLYNALKLTH VLSIIVWIGGMVFAHLFLRPAAQRLEPPQRVQLMHDVLQRFLGAVAVAIVVVLTSGLG MIGAVSVGSGGAFSMPLDWTIMATLGIVMMGIFAYIYFALLSRLEQAVATSDWSAGGQ ALGRIRAWVGVNLLIGVVVVAQTVLM" misc_feature complement(2183803..2184171) /locus_tag="Alide2_2093" /note="Copper resistance protein D; Region: CopD; cl00563" /db_xref="CDD:193872" gene complement(2184281..2186641) /locus_tag="Alide2_2094" /db_xref="GeneID:10483135" CDS complement(2184281..2186641) /locus_tag="Alide2_2094" /EC_number="2.1.1.14" /inference="protein motif:HAMAP:MF_00172" /note="PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; TIGRFAM: Cobalamin-independent methionine synthase; HAMAP: Cobalamin-independent methionine synthase; KEGG: ajs:Ajs_1630 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase" /codon_start=1 /transl_table=11 /product="5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase" /protein_id="YP_004387983.1" /db_xref="GI:330824680" /db_xref="InterPro:IPR002629" /db_xref="InterPro:IPR006276" /db_xref="InterPro:IPR013215" /db_xref="GeneID:10483135" /translation="MAATPVLTHTLGFPRMGAQRELKFALERHWRGEIDAAALEAVGA ELRTRHWQAQRDAGLAFVTVGDFAFYDHVANHIQLLGCESARFGFAPDTPELARYFAM ARGVQAQAHGAPGCGAGCTHAAHEGAGQSALEMTKWFDTNYHYLVPELHAGTAFSLAS ERLFGEVAQAQALGHRVKAVLVGPLTFLWLSKEKGDTPFDRLALLDRLLPVYAQILAR LKAQGVEWVQIDEPILGLDLPAAWSQAFEPAYWQLGKAGPQVLLATYFSPLEDHLRLA CQLPVAGLHVDAVRAPHELTGVADWLPGYKVLSVGVVDGRNIWRTDPDAALALLRPVA DKHQGPLWIAPSCSLLHVPVSLAGEDALDAELRSWLTFATEKLGELGLLAALLDGRAG DGDPRLADARAAAASRRASARVHRPEVTRRLAGAPEGADRRRAPFPARQAVQRTRLRL PLLPTTTIGSFPQTPAIRAARAAHRRGALDDAEYQARMRAEIAHAVRTQEALGLDVLV HGEAERNDMVEYFGEQLDGFAFTQNGWVQSYGSRCVKPPVLYGDVARPRPMTVDWTVY AQSLTPRPMKGMLTGPVTILQWSFVRDDQPRSRTCEQIAWAIRDEVADLERAGIGIVQ IDEPAIREGLPLRRAHWKPYLDWATRAFRIAACGVGDATQIHTHMCYSEFNDILPGIA AMDADVITIETSRSGMELLQGFGTFKYPNEIGPGVYDIHSPRVPGVDEMLRLLRRAAE VVPPGNLWVNPDCGLKTRAWPETEAALRNMVQAAGALRAEHAGAGT" misc_feature complement(2184326..2186626) /locus_tag="Alide2_2094" /note="5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional; Region: PRK05222" /db_xref="CDD:179966" misc_feature complement(2185505..2186623) /locus_tag="Alide2_2094" /note="N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by...; Region: CIMS_N_terminal_like; cd03312" /db_xref="CDD:48147" misc_feature complement(order(2186210..2186212,2186216..2186218, 2186231..2186233,2186573..2186575,2186582..2186584)) /locus_tag="Alide2_2094" /note="THF binding site; other site" /db_xref="CDD:48147" misc_feature complement(2184326..2185270) /locus_tag="Alide2_2094" /note="C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by...; Region: CIMS_C_terminal_like; cd03311" /db_xref="CDD:48146" misc_feature complement(order(2184380..2184385,2184632..2184634, 2184638..2184640,2184764..2184766,2184770..2184772, 2185091..2185093,2185109..2185111,2185262..2185270)) /locus_tag="Alide2_2094" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:48146" misc_feature complement(order(2184758..2184760,2184878..2184880, 2185010..2185018)) /locus_tag="Alide2_2094" /note="THF binding site; other site" /db_xref="CDD:48146" misc_feature complement(order(2184383..2184385,2184566..2184568, 2184632..2184634,2184638..2184640)) /locus_tag="Alide2_2094" /note="zinc-binding site [ion binding]; other site" /db_xref="CDD:48146" gene 2186750..2187676 /locus_tag="Alide2_2095" /db_xref="GeneID:10483136" CDS 2186750..2187676 /locus_tag="Alide2_2095" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_1631 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387984.1" /db_xref="GI:330824681" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10483136" /translation="MIQSILEIRHLRTLQALRDSGSLVRAAQLLNLTQSALSHQIKLL EDRYGTPLFERKSVPPQFSATGTRLLQLADAVLPQVEAAERDVARLSQGQGGQLRIAV ECHTCFDWLMPAMDAFRARWPEVELDIVSGFHADPVGLLHQGRADLAIVSEVDAQEQG VDYHPLFGFEIRALLANTHALLAKPYLVAQDFADQTVITYPVPDEMLDLVRQVLEPAG VRPPRRTTELTVAMLQLVASGRGVAALPLWAVQGYLDRGYVAARPIGTQGLRGELHAA CLPQLSSRPFLQDFVRVTRETSFVTLKGVELL" misc_feature 2186762..2187637 /locus_tag="Alide2_2095" /note="DNA-binding transcriptional regulator MetR; Provisional; Region: PRK15421" /db_xref="CDD:185319" misc_feature 2186771..2186947 /locus_tag="Alide2_2095" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2187038..2187625 /locus_tag="Alide2_2095" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold; Region: PBP2_MetR; cd08441" /db_xref="CDD:176132" misc_feature order(2187083..2187088,2187092..2187097,2187104..2187106, 2187116..2187118,2187122..2187142,2187416..2187433, 2187449..2187454,2187458..2187463) /locus_tag="Alide2_2095" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176132" gene 2187792..2187959 /locus_tag="Alide2_2096" /db_xref="GeneID:10483137" CDS 2187792..2187959 /locus_tag="Alide2_2096" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387985.1" /db_xref="GI:330824682" /db_xref="GeneID:10483137" /translation="MAASLAIHSRLHVALRIAAAVLGGYAFCWGFVARSLPRVWLVLA GAASLVQMGLA" gene 2187975..2189645 /locus_tag="Alide2_2097" /pseudo /db_xref="GeneID:10483138" gene 2189638..2189964 /locus_tag="Alide2_2098" /db_xref="GeneID:10483139" CDS 2189638..2189964 /locus_tag="Alide2_2098" /inference="similar to AA sequence:KEGG:Daci_3076" /note="KEGG: dac:Daci_3076 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387986.1" /db_xref="GI:330824683" /db_xref="GeneID:10483139" /translation="MRDALLLAAAMLAATAGMGWLALDVHWEQVRGADPLAPSTARLL HALGALGLAASLALCLTVDHASMASLVWVMALAAAALAVAFTLTWRPRWLGPLVVWRG LVRSVK" sig_peptide 2189638..2189688 /locus_tag="Alide2_2098" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.316 at residue 17" gene complement(2189983..2190504) /locus_tag="Alide2_2099" /db_xref="GeneID:10483140" CDS complement(2189983..2190504) /locus_tag="Alide2_2099" /inference="protein motif:PFAM:PF11454" /note="PFAM: Protein of unknown function DUF3016; KEGG: dac:Daci_0667 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387987.1" /db_xref="GI:330824684" /db_xref="InterPro:IPR021557" /db_xref="GeneID:10483140" /translation="MMMLRHHTLALALVLALAGCASHPPANPPSGTVSVTHADPAGFS EARNAPQESERARQAWIDALSQHLAERAARALPEGERLEVHITNIQRAGGFEPWRGPQ ATQLRMARDIYPPRIALEFKRLAPDGHVLETGSRTLRDTAFMMRPDMYPSDPLRHEKA LLDDWVRKELGGR" sig_peptide complement(2190388..2190504) /locus_tag="Alide2_2099" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.442 at residue 39" misc_feature complement(2189998..2190414) /locus_tag="Alide2_2099" /note="Protein of unknown function (DUF3016); Region: DUF3016; pfam11454" /db_xref="CDD:151893" gene complement(2190611..2191471) /locus_tag="Alide2_2100" /db_xref="GeneID:10483141" CDS complement(2190611..2191471) /locus_tag="Alide2_2100" /EC_number="4.1.3.30" /inference="protein motif:PRIAM:4.1.3.30" /note="KEGG: dac:Daci_3579 PEP phosphonomutase; PFAM: Isocitrate lyase/phosphorylmutase" /codon_start=1 /transl_table=11 /product="methylisocitrate lyase" /protein_id="YP_004387988.1" /db_xref="GI:330824685" /db_xref="InterPro:IPR000918" /db_xref="GeneID:10483141" /translation="MNTKQRLKQLVEARNGLIVPGAFNALSARVIADLGFQAIYVTGA GVTNMWFGMPDQGFMGLHEIAEHTARIRDAVDVPLIVDADTGFGNALNVVHTVRTLER AGADCIQLEDQVTPKRCGHFAGKEVISAEEAVGKIKAAADARRDPGFLIMARTDAAAT HGFEAAVERAQKFAEAGADILFVEAVTRAEEVRALPQRLAKPQLMNMVIGGKTPIFNA EQLGELGYGIVLYANAALQGAVAGMQKALTVLRDEKEVQESSGLVTPFAERQLLVGKP AWDALEKRYG" misc_feature complement(2190617..2191459) /locus_tag="Alide2_2100" /note="PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]; Region: PrpB; COG2513" /db_xref="CDD:32583" misc_feature complement(2190731..2191453) /locus_tag="Alide2_2100" /note="Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377" /db_xref="CDD:119340" misc_feature complement(order(2190731..2190736,2190740..2190748, 2190752..2190760,2191046..2191048,2191055..2191060, 2191067..2191069,2191076..2191081,2191166..2191168, 2191175..2191177,2191187..2191192,2191208..2191210, 2191250..2191255,2191262..2191267,2191271..2191276, 2191283..2191288,2191292..2191303,2191310..2191315, 2191325..2191330,2191340..2191342,2191361..2191369, 2191373..2191375,2191382..2191387,2191391..2191405, 2191409..2191420,2191424..2191426,2191445..2191447)) /locus_tag="Alide2_2100" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:119340" misc_feature complement(order(2190776..2190778,2190848..2190850, 2190854..2190856,2190920..2190922,2191010..2191012, 2191139..2191141,2191220..2191222,2191226..2191228, 2191307..2191309,2191340..2191348,2191352..2191354)) /locus_tag="Alide2_2100" /note="active site" /db_xref="CDD:119340" misc_feature complement(order(2191139..2191141,2191220..2191222, 2191226..2191228,2191307..2191309)) /locus_tag="Alide2_2100" /note="Mg2+/Mn2+ binding site [ion binding]; other site" /db_xref="CDD:119340" gene complement(2191633..2192796) /locus_tag="Alide2_2101" /db_xref="GeneID:10483142" CDS complement(2191633..2192796) /locus_tag="Alide2_2101" /inference="protein motif:TFAM:TIGR02334" /note="KEGG: dac:Daci_3586 AcnD-accessory protein PrpF; TIGRFAM: PrpF, AcnD-accessory; PFAM: PrpF protein" /codon_start=1 /transl_table=11 /product="AcnD-accessory protein PrpF" /protein_id="YP_004387989.1" /db_xref="GI:330824686" /db_xref="InterPro:IPR007400" /db_xref="InterPro:IPR012709" /db_xref="GeneID:10483142" /translation="MSNSPQTRIPATYMRGGTSKGVFFNAKDLPPPGPQRDAILLRVL GSPDPYGKQIDGLGNASSSTSKAVILSRSTRPGHDVDYLFGQVSIDQPFVDWSGNCGN LSAAVGPCAIHLGLIDPARIPIHGSVTVRIWQANIGKTIVAHVPIAGGQVQETGDFEL DGVAFPAAEVPLEFIEPSDDSGAMFPTGNVMDTLEVPGVGTFQATLINAGIPTIFLNA KDVGCTGTELQGDINEDKAALARFEAIRAHGAVRMGLIHDVAEAAQRQHTPKIVFIAP PASYTASSGKRIAAGDIDLLARALSMGKLHHAMMGTAAVAIGTAAAIPGTLVHLAAGG GTRNAVRFGHPSGTLRVGAEAAQANGQWQVTKALMSRSARILMEGWVRVPTPP" misc_feature complement(2191639..2192784) /locus_tag="Alide2_2101" /note="probable AcnD-accessory protein PrpF; Region: prpF; TIGR02334" /db_xref="CDD:131387" gene complement(2192824..2195427) /locus_tag="Alide2_2102" /db_xref="GeneID:10483143" CDS complement(2192824..2195427) /locus_tag="Alide2_2102" /EC_number="4.2.1.3" /inference="protein motif:TFAM:TIGR02333" /note="TIGRFAM: 2-methylisocitrate dehydratase AcnD, Fe/S-dependent; KEGG: dia:Dtpsy_2080 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel" /codon_start=1 /transl_table=11 /product="2-methylisocitrate dehydratase, Fe/S-dependent" /protein_id="YP_004387990.1" /db_xref="GI:330824687" /db_xref="InterPro:IPR000573" /db_xref="InterPro:IPR001030" /db_xref="InterPro:IPR012708" /db_xref="GeneID:10483143" /translation="MTMNIRYRKRLPGTALDYFDAREAVEALAPGAWARLPYTTRVHA ENLVRRADPAQLNDYLRQLIGRKREIDFPWYPVRVVCHDILGQTALVDLAGLRDAIAK EGGDPAAVNPVVPVQLIVDHSLAVECGGFDPDAFAKNRAIEDRRNEDRFHFIEWTKKA FANVDVIPAGNGIMHQINLEKMSPVVYVQDGVAFPDTCVGTDSHTPHVDALGVIAVGV GGLEAENVMLGRASWMRLPEIVGIKLTGRRQPGITATDMALALTEFLRQEKVVGAYVE FFGEGADSLSIGDRATISNMCPEYGATAALFTIDPQTIEYLRLTDRSPEQVRLVETYA RQAGFWHTDLQTAQYERVLAFDLSTVVRNMAGPSNPHRRLPTAALAERGIAAPWTEEP GRMPDGAVIIAAITSCTNTSNPRNVIAAALLARNASRLGLSRKPWVKTSLAPGSKAVE LYLKEAGLLGALEKLGFGIVAFACTTCNGMSGALDPAIQQEIIERDLYATAVLSGNRN FDGRIHPYARQAFLASPPLVVAYAIAGTVRFDIERDVFAVVDGKEIRLKDLWPSDEEI DAIVARAVKPEQFRKVYEPMFAIPARDDGARVSPQYGWRPQSTYIRRPPYWDTEGVGA LAANPRTLKGMRPLAILPDNITTDHLSPSNAILPDSAAGEYLARMGLPEEDFNSYATH RGDHLTAMRATFANPQLVNEMAGRKGSLARIEPEGQVVRMWEAIETYLNRRQPLIIIA GADYGQGSSRDWAAKGVRLAGVEVVVAEGFERIHRTNLIGMGVLPLEFQSGTNRLTLQ LDGTETYDVEGALTPRATLTLVIRRKNGELACVPMICRLDTAEEVSVYEAGGVLQRFA QDFLAKSASSA" misc_feature complement(2192845..2195418) /locus_tag="Alide2_2102" /note="2-methylisocitrate dehydratase, Fe/S-dependent; Region: 2met_isocit_dHY; TIGR02333" /db_xref="CDD:131386" misc_feature complement(2193817..2195196) /locus_tag="Alide2_2102" /note="Aconitase A catalytic domain; Region: AcnA_IRP; cd01586" /db_xref="CDD:153136" misc_feature complement(order(2193892..2193894,2193907..2193909, 2193994..2193996,2194819..2194824,2195173..2195175, 2195182..2195184)) /locus_tag="Alide2_2102" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153136" misc_feature complement(order(2193910..2193912,2193994..2193999, 2194006..2194008,2194204..2194206,2194816..2194818)) /locus_tag="Alide2_2102" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153136" misc_feature complement(2193001..2193510) /locus_tag="Alide2_2102" /note="Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme...; Region: Aconitase_swivel; cl00215" /db_xref="CDD:185833" misc_feature complement(2193178..2193186) /locus_tag="Alide2_2102" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73200" gene complement(2195447..2196607) /locus_tag="Alide2_2103" /db_xref="GeneID:10483144" CDS complement(2195447..2196607) /locus_tag="Alide2_2103" /EC_number="2.3.3.5" /inference="protein motif:TFAM:TIGR01800" /note="TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; KEGG: ajs:Ajs_1635 methylcitrate synthase; PFAM: Citrate synthase-like" /codon_start=1 /transl_table=11 /product="2-methylcitrate synthase/citrate synthase II" /protein_id="YP_004387991.1" /db_xref="GI:330824688" /db_xref="GO:0003824" /db_xref="InterPro:IPR002020" /db_xref="InterPro:IPR011278" /db_xref="GeneID:10483144" /translation="MTATTTLTPPPKAKKSVALSGVTAGNTALCTVGRTGNDLHYRGY DILDIAEVCEFEEIAHLLVHGKLPTRAELKTYKAKLKALRGLPGSVKTALEQLPAASH PMDVMRTGVSALGCALPEKDDHNIPGARDIADRLMASLGSMLLYWYHFSNSGRRIEVE TQDDSIGAHFLNLLHGDKPGAGWERAMHTSLNLYAEHEFNASTFTARVIAGTGSDMYS AISGAIGALRGPKHGGANEVAFEVQKRYDTPDEAEADIRRRVEAKEVVIGFGHPVYTV SDPRNVIIKGVARRLSIDAGSTKMYDIAERLESVMWEVKKMFPNLDWFSAVSYHMMQV PTAMFTPLFVIARTSGWAAHIIEQRQDNKIIRPSANYVGPEDQAFVPIEQRR" misc_feature complement(2195453..2196562) /locus_tag="Alide2_2103" /note="Citrate synthase [Energy production and conversion]; Region: GltA; COG0372" /db_xref="CDD:30721" misc_feature complement(2195462..2196559) /locus_tag="Alide2_2103" /note="Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (...; Region: Ec2MCS_like_1; cd06117" /db_xref="CDD:99870" misc_feature complement(order(2195489..2195521,2195792..2195794, 2195915..2195926,2195930..2195935,2195954..2195956, 2195963..2195974,2195981..2195983,2195993..2195998, 2196005..2196019,2196128..2196130,2196272..2196274, 2196281..2196283,2196293..2196295,2196305..2196307, 2196329..2196334,2196341..2196346,2196530..2196544, 2196551..2196559)) /locus_tag="Alide2_2103" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99870" misc_feature complement(order(2195510..2195512,2195519..2195521, 2195567..2195569,2195579..2195581,2195642..2195644, 2195648..2195650,2195657..2195659,2195663..2195665, 2195768..2195770,2195783..2195785,2195792..2195815, 2195894..2195896,2195903..2195905,2195909..2195917, 2196008..2196010,2196017..2196019,2196548..2196550)) /locus_tag="Alide2_2103" /note="active site" /db_xref="CDD:99870" misc_feature complement(order(2195567..2195569,2195648..2195650, 2195768..2195770,2195792..2195806,2195810..2195815, 2195912..2195917,2196008..2196010,2196017..2196019, 2196548..2196550)) /locus_tag="Alide2_2103" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99870" misc_feature complement(order(2195510..2195512,2195567..2195569, 2195579..2195581,2195642..2195644,2195768..2195770, 2195795..2195797,2195909..2195914,2196008..2196010, 2196017..2196019)) /locus_tag="Alide2_2103" /note="oxalacetate/citrate binding site [chemical binding]; other site" /db_xref="CDD:99870" misc_feature complement(order(2195519..2195521,2195642..2195644, 2195648..2195650,2195657..2195659,2195663..2195665, 2195783..2195785,2195792..2195794,2195798..2195815, 2195894..2195896,2195903..2195905,2195912..2195917)) /locus_tag="Alide2_2103" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99870" misc_feature complement(order(2195642..2195644,2195795..2195797, 2195912..2195914)) /locus_tag="Alide2_2103" /note="catalytic triad [active]" /db_xref="CDD:99870" gene complement(2196604..2196999) /locus_tag="Alide2_2104" /db_xref="GeneID:10483145" CDS complement(2196604..2196999) /locus_tag="Alide2_2104" /inference="protein motif:PFAM:PF03061" /note="KEGG: dia:Dtpsy_2078 thioesterase superfamily protein; manually curated; PFAM: Thioesterase superfamily" /codon_start=1 /transl_table=11 /product="thioesterase superfamily protein" /protein_id="YP_004387992.1" /db_xref="GI:330824689" /db_xref="InterPro:IPR006683" /db_xref="GeneID:10483145" /translation="MTRPPGTVETKDMVFPQDANHHGTLFAGQGLQRLARAALVAARE AAGCEVVMAAVTGVQFLAPVPVGRALVLRAWIGRMGSSSLTVCVHGLAEAPGCAPELV LQGVFELVAVDAKGRPRAIAAAYLKPETT" misc_feature complement(2196637..2196999) /locus_tag="Alide2_2104" /note="Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain...; Region: BFIT_BACH; cd03442" /db_xref="CDD:48037" gene 2197102..2198562 /locus_tag="Alide2_2105" /db_xref="GeneID:10483146" CDS 2197102..2198562 /locus_tag="Alide2_2105" /inference="protein motif:PFAM:PF09856" /note="KEGG: ajs:Ajs_1637 XRE family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="YP_004387993.1" /db_xref="GI:330824690" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR010359" /db_xref="InterPro:IPR018653" /db_xref="GeneID:10483146" /translation="MRKTFMGVRLRRLREERGLTQVALARALDISASYLNQIEQNQRP LTVPVLLKINAVFGVDVQRFSDDDEARLIAGLRDVLADMPAGAAADAVSLAEIRELAA SMPAVARALLALHRGQREAHERLEALSAHYGDERGGAAGAAHAPPMAYEEVRDFFFAR HNHIAELDDAAERLAGQWRLAPGASEAGLRQRLERAHGVRVSLPAEGLPGHGQDGAGE AMQRSFDAAARVLYLSPALRPAQRAFQMATQLAFLEVPQELQRIVDAAQLSGDAARAL ARIGLANYFAGALLLPYAPFLQSAEALHYDIERLGQRWGVGFETVCHRLSTLQRPGAR GVPFFFIRVDRAGNISKRQSATHFHFSKIGGTCPLWNVYEAFAQPGRIVRQLARMPDG RAYLWVARTVARSTGGWGAPGKTFSVALGCDVQHAPQLVYARGLDLADPDAPVPIGMG CKVCERTACPQRAFPPMGRALEVNENRSSLVPYRVA" misc_feature 2197153..2197308 /locus_tag="Alide2_2105" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" misc_feature 2197540..2198559 /locus_tag="Alide2_2105" /note="Predicted transcriptional regulator [General function prediction only]; Region: COG3800" /db_xref="CDD:33594" misc_feature 2197765..2198079 /locus_tag="Alide2_2105" /note="Domain of unknown function (DUF955); Region: DUF955; cl01076" /db_xref="CDD:154183" misc_feature 2198080..2198550 /locus_tag="Alide2_2105" /note="Predicted transcriptional regulator (DUF2083); Region: DUF2083; pfam09856" /db_xref="CDD:150518" gene complement(2198674..2199582) /locus_tag="Alide2_2106" /db_xref="GeneID:10483147" CDS complement(2198674..2199582) /locus_tag="Alide2_2106" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cti:RALTA_B2225 putative transcription regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004387994.1" /db_xref="GI:330824691" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10483147" /translation="MAGNPINPARIDFTTLRLFCAVAQTGSITKGAERCHLALSAASR RMADFEAASKACLMERTAQGIRLTPAGHVALQHAMRLFQGFELFSNELSEYSSGSRGH VRLWANMSALVEFLPAALAGFLQRYPETRVEVEEQLTGDIVRAVVEGMADVGIFVAGA PTHGLNVRPYRVDELVVLCSQAHPLAAHDRIGFRHCLAHDFVGLNRGSSLLNTITTAA QEAGFPLRLRVQVRSFDAMCEMIAANLGIGVLPLGTCARKLGPWGLKVVHLDDAWARR QLLIATSANRTLSGSASLLVEHLAKA" misc_feature complement(2198677..2199552) /locus_tag="Alide2_2106" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(2199367..2199537) /locus_tag="Alide2_2106" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2198686..2199279) /locus_tag="Alide2_2106" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(2198854..2198859,2198863..2198868, 2198884..2198901,2199175..2199195,2199199..2199201, 2199211..2199213,2199220..2199225,2199229..2199234)) /locus_tag="Alide2_2106" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene 2199712..2200095 /locus_tag="Alide2_2107" /db_xref="GeneID:10483148" CDS 2199712..2200095 /locus_tag="Alide2_2107" /inference="protein motif:PFAM:PF00903" /note="PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B2224 putative metallothiol transferase" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004387995.1" /db_xref="GI:330824692" /db_xref="InterPro:IPR004360" /db_xref="GeneID:10483148" /translation="MIHHLDHLVLTTADEQACIDFYVGLLGMTLETFGQGRKAFKFGG QKINLHVKGSEFEPKAHLPVPGALDLCFIAARPLDEVIARIRERGVRIVEGPVRRTGA SYPLRSIYLRDPDLNLIEISERAEA" misc_feature 2199715..2200077 /locus_tag="Alide2_2107" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_2; cd07253" /db_xref="CDD:176676" misc_feature order(2199715..2199738,2199787..2199792,2199835..2199849, 2199901..2199936,2199949..2199954,2199961..2199963, 2199988..2199990,2200009..2200020,2200045..2200047, 2200054..2200059,2200063..2200065,2200069..2200071) /locus_tag="Alide2_2107" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176676" misc_feature order(2199730..2199732,2199916..2199918,2200069..2200071) /locus_tag="Alide2_2107" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176676" gene 2200145..2201212 /locus_tag="Alide2_2108" /db_xref="GeneID:10483149" CDS 2200145..2201212 /locus_tag="Alide2_2108" /inference="similar to AA sequence:KEGG:Hsero_2301" /note="KEGG: hse:Hsero_2301 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004387996.1" /db_xref="GI:330824693" /db_xref="GeneID:10483149" /translation="MNRSMKSAAMAASLLALLGCAGAPIAPVAGQGPVAVAEIGSFHT GGRSVTLSGLPKKEVRFTPTSPPTLLDPNGEFEVEQMYTQYVKLAPQSRRARYPMLMW HGGGLTGVTWETKPDGQPGWQMYFVAAGHDVYVSDAVERGRASWARYPEIFKSEPVFR TKKEGWELFRIGPADSYDSAASRHAYPDTQFPIAAFDQFMKQGVPRWVTNDEPTLRAY DALVNKVCPCVITVHSQGSTFAYTLASRYPDKIKAVVGVEPSGALDPDKVDVAPLARV PLLFVWGDKIRETPRWQGIQAPMKKMIAAVKARGGQVDEIDLPAQGIRGNSHMIMMDR NSDQVAALVQDWLVRRGLATR" sig_peptide 2200145..2200237 /locus_tag="Alide2_2108" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.509 at residue 31" misc_feature <2200844..>2201065 /locus_tag="Alide2_2108" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(2201219..2201665) /locus_tag="Alide2_2109" /db_xref="GeneID:10483150" CDS complement(2201219..2201665) /locus_tag="Alide2_2109" /inference="protein motif:PFAM:PF01479" /note="KEGG: ajs:Ajs_1639 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4" /codon_start=1 /transl_table=11 /product="RNA-binding S4 domain-containing protein" /protein_id="YP_004387997.1" /db_xref="GI:330824694" /db_xref="GO:0003723" /db_xref="InterPro:IPR002942" /db_xref="GeneID:10483150" /translation="MTTPPDSMRLDKWLWCARFYKTRSLAVEEIGKGRVTVNGQAAKA ARELRAGDTVALRQGQVPRTVVVRGLSNFRGPAPVAQQLYEETPESIAERARAAEARR LAPEPAASLREGRPTKRDRRSMDDLRHGWGDRWSASLDDDGPPGKS" misc_feature complement(2201468..2201644) /locus_tag="Alide2_2109" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature complement(order(2201519..2201521,2201525..2201545, 2201564..2201566,2201570..2201575,2201582..2201587, 2201591..2201596,2201600..2201605,2201639..2201641)) /locus_tag="Alide2_2109" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" gene complement(2201688..2203091) /locus_tag="Alide2_2110" /db_xref="GeneID:10483151" CDS complement(2201688..2203091) /locus_tag="Alide2_2110" /inference="protein motif:PFAM:PF08521" /note="KEGG: dia:Dtpsy_2074 histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_004387998.1" /db_xref="GI:330824695" /db_xref="GO:0000155" /db_xref="GO:0004871" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR013727" /db_xref="GeneID:10483151" /translation="MTRQRSLRRQLLLGILLPTLLFIGLNTYSLYRQTLGALNTAYDR TLLASAKTISEQIDVRGYDERAELRVIVPYAALEAFEADNQSRMYYRVSNLRGELVSG FGELPMWRGSIAPRPPYAALVDFYDASFRGRPVRVAALLQPVASPQGRGMAVIQVAET LELRHAAALQILRDTLARQALLVALVAAIVVLVVQRATRPVRQLSADLQARAEGDLSP IAAPAAPRELQPLIDATNAVMRRLSHLLEHQKRFVRDASHQLRTPLAVLKTQVQSALR GDMPPGQALHEIGDTVERATQLANQMLALAKVEQLRQQGELPTTRLDEVLREVALDLS PLIAQGDLDFGIATDAAPIRAHAWMLRELCRNLLHNAIRHATPATELAVTLRAQGTHA ELTIADAGPGIDDELAARLFEPFSAGDVRKGSGLGLAICQEIVQALGGSIALSNRRQG ARVLGLDAVVRLPLAPA" misc_feature complement(2202576..2203016) /locus_tag="Alide2_2110" /note="Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521" /db_xref="CDD:149540" misc_feature complement(2202171..2202356) /locus_tag="Alide2_2110" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2202186..2202188,2202198..2202200, 2202207..2202209,2202219..2202221,2202228..2202230, 2202240..2202242,2202282..2202284,2202291..2202293, 2202303..2202305,2202312..2202314,2202324..2202326, 2202336..2202338)) /locus_tag="Alide2_2110" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2202318..2202320) /locus_tag="Alide2_2110" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2201733..2202014) /locus_tag="Alide2_2110" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2201733..2201735,2201739..2201744, 2201757..2201759,2201760..2201762,2201808..2201819, 2201883..2201888,2201892..2201894,2201898..2201900, 2201904..2201906,2201973..2201975,2201982..2201984, 2201994..2201996)) /locus_tag="Alide2_2110" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2201982..2201984) /locus_tag="Alide2_2110" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2201811..2201813,2201817..2201819, 2201886..2201888,2201892..2201894)) /locus_tag="Alide2_2110" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2203088..2203771) /locus_tag="Alide2_2111" /db_xref="GeneID:10483152" CDS complement(2203088..2203771) /locus_tag="Alide2_2111" /inference="protein motif:PFAM:PF00072" /note="KEGG: ajs:Ajs_1641 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal" /codon_start=1 /transl_table=11 /product="winged helix family two component transcriptional regulator" /protein_id="YP_004387999.1" /db_xref="GI:330824696" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="GeneID:10483152" /translation="MQLLLVEDDATMQATLQRSLARRGMAVTALADGRAALAEWRAHP PDAVVLDLTLPGLDGLQVLEQARAGGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKP FDLDELEARLRALVRRSGDAMEAKSAASALAMGAISYEKESGIIYAHGAPMDLTPREL ALLRALLAQPGHAVTKERLYELVFPGQSEVQYEAIEVVAYRLRKKLAGTGVVLMTLRG LGYLLKPEA" misc_feature complement(2203100..2203771) /locus_tag="Alide2_2111" /note="transcriptional regulatory protein TctD; Provisional; Region: PRK15479" /db_xref="CDD:185376" misc_feature complement(2203463..2203762) /locus_tag="Alide2_2111" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2203466..2203471,2203478..2203480, 2203535..2203537,2203595..2203597,2203619..2203621, 2203748..2203753)) /locus_tag="Alide2_2111" /note="active site" /db_xref="CDD:29071" misc_feature complement(2203619..2203621) /locus_tag="Alide2_2111" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2203595..2203603,2203607..2203612)) /locus_tag="Alide2_2111" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2203463..2203471) /locus_tag="Alide2_2111" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2203103..2203348) /locus_tag="Alide2_2111" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(2203112..2203114,2203127..2203129, 2203154..2203159,2203181..2203183,2203190..2203192, 2203244..2203249,2203304..2203306)) /locus_tag="Alide2_2111" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 2203914..2204873 /locus_tag="Alide2_2112" /db_xref="GeneID:10483153" CDS 2203914..2204873 /locus_tag="Alide2_2112" /inference="similar to AA sequence:KEGG:Dtpsy_2072" /note="KEGG: dia:Dtpsy_2072 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388000.1" /db_xref="GI:330824697" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10483153" /translation="MRRDTFLKSLAALAAAGSLPLSAQAAVAIKMMLPANPGGGWDTT GRALGKALQDAGVASSVTYDNKGGAAGAIGLAQFINGSKGDPNALMVMGAVMLGGIIT GKPPVNLSQATPIARLTSEYNVFVLPANSPFKTMADVVAQLKKDPGSVKWGGGSRGST EHIAAAMIAREVGVDPAKINYVAFRGGGEATAAILGGNVTVGGSGYSEFAEYITAGKM KPIGVTSPQRLKGLNIPTLKEQGINVEIGNWRGVYGAPGITAEQRKALTAMVEKAVKS KAWAEAIQKNDWTPAWLAGDEFANFVDQEFASLRATMVKSGMV" sig_peptide 2203914..2203991 /locus_tag="Alide2_2112" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.982 at residue 26" misc_feature 2203995..2204870 /locus_tag="Alide2_2112" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 2204046..2204864 /locus_tag="Alide2_2112" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2205010..2205564 /locus_tag="Alide2_2113" /db_xref="GeneID:10483154" CDS 2205010..2205564 /locus_tag="Alide2_2113" /inference="similar to AA sequence:KEGG:Dtpsy_2071" /note="KEGG: dia:Dtpsy_2071 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388001.1" /db_xref="GI:330824698" /db_xref="GeneID:10483154" /translation="MSELAPSSDPAAADAGSVPSPFWQAAVGAAVVLVAAGMAFGALQ IPGDAGYGGVGPNFLPWVCAAVLGLCGVLLIREALTGGYRQAADPGGAPRAALGPFAW VTAGLLLNAALIVDLGFILGCTLCYALAVQGLRRANGQTGRLAPRALAVDVLTGLAIS APVFWLFTQFLAINLPGLTNTGWL" misc_feature 2205160..2205537 /locus_tag="Alide2_2113" /note="Tripartite tricarboxylate transporter TctB family; Region: TctB; pfam07331" /db_xref="CDD:191726" gene 2205564..2207093 /locus_tag="Alide2_2114" /db_xref="GeneID:10483155" CDS 2205564..2207093 /locus_tag="Alide2_2114" /inference="protein motif:PFAM:PF01970" /note="PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_1644 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388002.1" /db_xref="GI:330824699" /db_xref="InterPro:IPR002823" /db_xref="GeneID:10483155" /translation="MEIFDALMAGFATAISPANLLWALVGCALGTAVGVLPGIGPAVA VAMLLPITSKVDMTASMIFFAGIYYGAMYGGSTTSILLNTPGETASMVTAMEGNKMAK SGRAGAALATAAIGSFVAGTVATVVVTLFAPSVAEFAVKLGPPEYFMLMVLAFTTVSA VLGQSSLRGMTALFIGLALGCVGMDQISGAARYTGGKMELLDGIDIVLVAVGLFAVAE VLYAALYEGRVEESQNKLTRVYMTARDWKRSVPAWLRGTLIGTPFGCIPAGGTEIPTF LSYATEKKLAKGEDKAEFGTKGAIEGVAGPEAANNATVTAALIPLLTLGIPTSNTTAV LLGAFQNYGINPGPQLFSSSAALVWALIASLYIGNIMLLVLNLPMVGLWVKLLKIPRP QLYAGILIFATVGAYGMRQSTFDLFLLYAIGLLGVLMRRFDFPTAPVVVGMILGPLAE AQMRNAVSIGEGSWWIFLQRPMSLALIVIVLAVLIVPRVLRRWAERNLARHHQSADDI V" misc_feature 2205564..2206982 /locus_tag="Alide2_2114" /note="Tripartite tricarboxylate transporter TctA family; Region: TctA; cl00772" /db_xref="CDD:153985" gene 2207159..2209348 /locus_tag="Alide2_2115" /db_xref="GeneID:10483156" CDS 2207159..2209348 /locus_tag="Alide2_2115" /EC_number="3.1.1.22" /inference="protein motif:PRIAM:3.1.1.22" /note="KEGG: dia:Dtpsy_2060 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; PFAM: D-(-)-3-hydroxybutyrate oligomer hydrolase, putative" /codon_start=1 /transl_table=11 /product="hydroxybutyrate-dimer hydrolase" /protein_id="YP_004388003.1" /db_xref="GI:330824700" /db_xref="InterPro:IPR016582" /db_xref="GeneID:10483156" /translation="MRSNERMGLARWAMAALAGVALAACGGGSSRPSNDLPQGIKEIS ATVYPATVAGTGATAQTQDLLTGGIGKTGLGAAAAPAYADPANPTAAELRRNALYSNY RGILDPMPGGGYGLLYGPNVTADGRVTAGEGLIPGREYVAVLDDGSGRKQTVIAVQVP DSFSASNPCIVLGASSGSRGVYGAIGTAGEWGLKKGCAVALTDAGKGVGLHNLADDTV NKIDGTRATRTAAGALGFFAAALSDAARAAYDAAFPNRIAIKHAHSQQNPEKDWGSDT LAAGRYALYVLNARYGTVANPVPFTKANTLVIAGSASNGGAASLRAAEQDGDGLIDGV VASEPVTEMPATAGYGIRFGGASVTGYGRTLAEYTTWGNIYQPCAALASAAALTEVSY YNFIGLAGMTARATARCDGLAAKGLVSGATTAERAADALAKLRAYGWTEDNDTMHNAH YGLGNGPILSAMYPMAYGRFGADANLCNTSFAAASPLTGDVAAAAPAALAQSFATANG TANGAPATVIYNDSQGGAKAWQFAVSASTGVADFGLDNALCQHALVSGRNPVTGAALT AASTPTKADSDKVRAGIAEVLHSANLRGKPAIIVAGRSDALVPVNNNARAYAALNRTI EGAASKLRYIEVVNGQHFDAFLPLPGFDTRFVPLHPYFNQAMDAMWAHLKSGAQLPAS QVVRTTPRGGAPGAAPAITAANVPPFVATPAAADQIGFSGTSITVPR" misc_feature 2207432..2209342 /locus_tag="Alide2_2115" /note="3HB-oligomer hydrolase (3HBOH); Region: 3HBOH; pfam10605" /db_xref="CDD:151132" gene complement(2209666..2210253) /locus_tag="Alide2_2116" /db_xref="GeneID:10483157" CDS complement(2209666..2210253) /locus_tag="Alide2_2116" /inference="similar to AA sequence:KEGG:CtCNB1_3704" /note="KEGG: ctt:CtCNB1_3704 putative lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388004.1" /db_xref="GI:330824701" /db_xref="InterPro:IPR007461" /db_xref="GeneID:10483157" /translation="MNQKISLRTAATAAMVAAASLSMMACTATKPDTQAAPRADSTSL DTRVNAALERLYQTAPGSRDQVRRAKGVLVFPSVIGGSFIVGVEHGRGVLRVQGRDRG QYSTTAASVGWQAGGQSRAVIYVFNTQEALDKFLASDGWSAGVDATVAVGRVGASGSV DTNTAETPVTGYVLNNLGLEAGISLQGSKITRIRD" sig_peptide complement(2210170..2210253) /locus_tag="Alide2_2116" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.826 at residue 28" misc_feature complement(2209669..2210178) /locus_tag="Alide2_2116" /note="Family of unknown function (DUF500); Region: DUF500; cl01109" /db_xref="CDD:194038" gene complement(2210438..2210605) /locus_tag="Alide2_2117" /db_xref="GeneID:10483158" CDS complement(2210438..2210605) /locus_tag="Alide2_2117" /inference="similar to AA sequence:KEGG:Dtpsy_2056" /note="KEGG: dia:Dtpsy_2056 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388005.1" /db_xref="GI:330824702" /db_xref="GeneID:10483158" /translation="MTRHTTLRLVFWAALAAFLAWDWSSSKPVDLRLEPPLIAAGSGQ AAAGGHCSMPD" sig_peptide complement(2210546..2210605) /locus_tag="Alide2_2117" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.618) with cleavage site probability 0.565 at residue 20" gene complement(2210619..2211716) /locus_tag="Alide2_2118" /db_xref="GeneID:10483159" CDS complement(2210619..2211716) /locus_tag="Alide2_2118" /inference="protein motif:PFAM:PF04143" /note="PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: ajs:Ajs_1649 protein of unknown function DUF395, YeeE/YedE" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388006.1" /db_xref="GI:330824703" /db_xref="InterPro:IPR007272" /db_xref="GeneID:10483159" /translation="MKRLPLAAVLAVFTGWLLWSVSARQAALFVVGLGLGAVLAGQRF GFTTGWRMLIEDKDASGVMGQLLLLALAAALAMPLLGHYPELTAALGPPSVSLLVGAF VFGLCMQIADGCGSGTLYKAGLGIPMNAAILPLFALGSFLGSLHLGFWLDLGRSQPVG LVGQFGWERALLITLAALAAVAVAVGWYVRRASAAAGQAPRPLVVRKWMVGAVLLAVL ATLNLVIAGQPWGVVYGFGLWAAKLAQASGAADLAHNWFWSQPGNAARLHETVLMDVT SITNIGILGGALWVSAGKPANARPLNGTQWAVALIAGLALGYSSRLAFGCNVGAMLSG ISTGSIHGWIWVPLAFAGTIFGLRIRRHFGF" sig_peptide complement(2211636..2211716) /locus_tag="Alide2_2118" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.599 at residue 27" misc_feature complement(<2210640..>2210876) /locus_tag="Alide2_2118" /note="putative inner membrane protein; Provisional; Region: PRK11099" /db_xref="CDD:182961" gene complement(2211811..2212755) /locus_tag="Alide2_2119" /db_xref="GeneID:10483160" CDS complement(2211811..2212755) /locus_tag="Alide2_2119" /inference="protein motif:PFAM:PF00581" /note="KEGG: dia:Dtpsy_2054 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like" /codon_start=1 /transl_table=11 /product="Rhodanese-like protein" /protein_id="YP_004388007.1" /db_xref="GI:330824704" /db_xref="InterPro:IPR001763" /db_xref="GeneID:10483160" /translation="MKKLFAIAVFAAAAHAGWAAQPLLTPAELSAQTAQPTPPRVIDI RDPASYGAQHIPGAVNAPYGKWRGPASNPGELPDTPKLTELVQSLGLTPGTHAVVVST GSDTTDFGAAARVYWTLKLLGLKELSILNGGMKAWSDAKLAQDAAVPQVARSAYQPQI DASLLATRDDVGQHVQLNNAALVDSRPDAFYQGKVRAPAAKLAGTLPGAQQLDFNQWF VPGTTTFVDKATAQKIAAKVKREQGQDMVAFCNTGHWAATDWFGLSEIAGLPGVKLYA GSMVDWTQSKDAPPMANQPSRFEALAYDAKQWWERKTK" sig_peptide complement(2212696..2212755) /locus_tag="Alide2_2119" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.902 at residue 20" misc_feature complement(2211889..2212695) /locus_tag="Alide2_2119" /note="Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Region: SseA; COG2897" /db_xref="CDD:32722" misc_feature complement(2212336..2212689) /locus_tag="Alide2_2119" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125" /db_xref="CDD:193666" misc_feature complement(2212441..2212443) /locus_tag="Alide2_2119" /note="active site residue [active]" /db_xref="CDD:29073" misc_feature complement(2211904..2212260) /locus_tag="Alide2_2119" /note="Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue; Region: TST_Repeat_2; cd01449" /db_xref="CDD:29080" misc_feature complement(2212006..2212008) /locus_tag="Alide2_2119" /note="active site residue [active]" /db_xref="CDD:29080" gene complement(2212870..2213865) /locus_tag="Alide2_2120" /db_xref="GeneID:10483161" CDS complement(2212870..2213865) /locus_tag="Alide2_2120" /EC_number="4.99.1.1" /inference="protein motif:TFAM:TIGR00109" /note="TIGRFAM: Ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; PFAM: Ferrochelatase" /codon_start=1 /transl_table=11 /product="ferrochelatase" /protein_id="YP_004388008.1" /db_xref="GI:330824705" /db_xref="GO:0004325" /db_xref="InterPro:IPR001015" /db_xref="GeneID:10483161" /translation="MPSPATAILLCNLGTPDAPTAPALRRYLAQFLSDPRVVEIPRAA WLPILHGIILRTRPAQSAAKYQTIWTPDGSPLAVWTNKQAVMLRGWLGEAGAQVQVLP AMRYGRPAIGAQLQALQAEGVKRVLVLPLYPQYSGTTTASVVDDVAAWTRRQRHFPEL RFVNDYHDDPGYVASLAASVRAHWQREGGPADKLVMSFHGIPERNVRLGDPYADQCRT TARLLAEALGLAPEQYQLTFQSRFGKARWLEPYTEPTLVALAQAGTRRVDVMCPGFTG DCLETLEEINQEARHAFLQAGGQEFRYIPCLNDSHAWITALSRIAQRHLAGWPDM" misc_feature complement(2212876..2213865) /locus_tag="Alide2_2120" /note="ferrochelatase; Reviewed; Region: hemH; PRK00035" /db_xref="CDD:178811" misc_feature complement(2213359..2213850) /locus_tag="Alide2_2120" /note="Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_N; cd03411" /db_xref="CDD:48638" misc_feature complement(order(2213365..2213367,2213371..2213373, 2213455..2213466,2213473..2213475,2213617..2213619, 2213629..2213631,2213662..2213664,2213674..2213676, 2213830..2213832)) /locus_tag="Alide2_2120" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48638" misc_feature complement(order(2213449..2213454,2213767..2213775, 2213785..2213787,2213827..2213829)) /locus_tag="Alide2_2120" /note="active site" /db_xref="CDD:48638" misc_feature complement(2212942..2213340) /locus_tag="Alide2_2120" /note="Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_C; cd00419" /db_xref="CDD:73203" misc_feature complement(order(2213026..2213028,2213125..2213127, 2213254..2213256,2213269..2213271)) /locus_tag="Alide2_2120" /note="active site" /db_xref="CDD:73203" misc_feature complement(order(2212942..2212944,2213017..2213019, 2213029..2213031,2213035..2213043,2213047..2213049, 2213209..2213211,2213221..2213223,2213230..2213238)) /locus_tag="Alide2_2120" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:73203" gene 2213884..2214609 /locus_tag="Alide2_2121" /db_xref="GeneID:10483162" CDS 2213884..2214609 /locus_tag="Alide2_2121" /inference="protein motif:TFAM:TIGR01509" /note="KEGG: dac:Daci_2563 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase" /codon_start=1 /transl_table=11 /product="HAD-superfamily hydrolase" /protein_id="YP_004388009.1" /db_xref="GI:330824706" /db_xref="GO:0008967" /db_xref="GO:0016787" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006402" /db_xref="InterPro:IPR006439" /db_xref="GeneID:10483162" /translation="MLHRLMTNAHTLDLPRIRAITLDLDDTLWPVWPAISRAEAALAG WLAAHAPATAALFSDAQALRAIRQRMETLRPDLRHDLSALRRESIRMALAQAGDDPLL AEPAFEFFFAERQRVDLFDDALAALDFMATRWPVVAVSNGNADVHRIGIGRYFKASLS ATQLGVAKPDARIFHAGAQAAGVAPGQVLHVGDDALLDARGALDAGMQAAWLNTVGAD WPHEGAPPHATVPSLSALCRLLA" misc_feature 2213923..2214606 /locus_tag="Alide2_2121" /note="Predicted hydrolase (HAD superfamily) [General function prediction only]; Region: COG1011" /db_xref="CDD:31215" misc_feature 2213923..2214603 /locus_tag="Alide2_2121" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene complement(2214581..2217337) /locus_tag="Alide2_2122" /db_xref="GeneID:10483163" CDS complement(2214581..2217337) /locus_tag="Alide2_2122" /EC_number="3.6.3.8" /inference="protein motif:TFAM:TIGR01494" /note="SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_2050 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal" /codon_start=1 /transl_table=11 /product="P-type (transporting) HAD superfamily ATPase" /protein_id="YP_004388010.1" /db_xref="GI:330824707" /db_xref="GO:0005524" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR004014" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006068" /db_xref="InterPro:IPR008250" /db_xref="GeneID:10483163" /translation="MRSRMPTTTPTEHRDTPWHALPASAIAERLATDARYGLPHAETA LRLARHGPNRLPAPPRRPAWRRLLAQFHNMLIYVMLASAAITGALGHWIDTGVLLGAV VINAVLGFVQEGKAESALDAIRRMLSPQATVLRGGERQLVAAEQLVPGDIVLLASGDK VPADLRILSAKSLRADEAALTGESVPSDKSEAAVAEDAPLGDRHCMLYSGTLVAAGTA VGAVAATGTRTELGRIGALLAQVEPGTTPLLSQIARFSRWLAAAILLFVAVTFVIGVL WRGQAPSDMFMMAVALAASAIPEGLPAIMTITLALGVRRMAHHHAIIRHLPAVETLGS VTVICSDKTGTLTCNEMTVQRAVTADRVYEVTGSGYAPQGGFQVGGMNASPAADPVLQ SMARVALLCNDSALNHGAEGWTLTGDPTEGALLAFALKAGLDGAATHAALPRIDAIPF ESEHRFMATLHHDHAGHALILVKGAPERVLDMCSTQSALQHGEQGCAPLDHDYWRRAA NDCAARALRVLAIAAKRVPAQQHALSWDDMEGGFTLLGILGSMDPPRPEAMAAVAECH AAGVRVKMITGDHGETARAIGAQLGIGLGRPALTGAEIELMDDSALREVVDSVHVFAR ASPEHKIRLVQALQARGEVVAMTGDGVNDAPALKRADVGVAMGRNGTEAAKDAAAMVL ADDNFATLGAAVREGRGVYDNVRKFILFMLPTNGGEALVVFFAIAFALQLPLTAAQVL WINLVTSGTLGLALAFEPTESDVMRRPPRDPRESLLSGPFIWRVVMVSLLMAGASLGL FLWELSRGSSLETARTMAVCAVVAAEMFYLFNSRHILRSALTREGLLGNPQVLMAIAA CALLQLAFVHAPWLQAVFGSTDLSPGEWLRVLLSGAVVFAAAELEKWAMRRSRSTPAA DTAR" misc_feature complement(2214611..2217337) /locus_tag="Alide2_2122" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: MgtA; COG0474" /db_xref="CDD:30822" misc_feature complement(2217065..2217256) /locus_tag="Alide2_2122" /note="Cation transporter/ATPase, N-terminus; Region: Cation_ATPase_N; cl02930" /db_xref="CDD:194483" misc_feature complement(2216345..2217049) /locus_tag="Alide2_2122" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature complement(<2215346..>2215492) /locus_tag="Alide2_2122" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature complement(2214629..2215144) /locus_tag="Alide2_2122" /note="Cation transporting ATPase, C-terminus; Region: Cation_ATPase_C; pfam00689" /db_xref="CDD:189671" gene complement(2217516..2218322) /locus_tag="Alide2_2123" /db_xref="GeneID:10483164" CDS complement(2217516..2218322) /locus_tag="Alide2_2123" /inference="protein motif:PFAM:PF00561" /note="PFAM: Alpha/beta hydrolase fold-1; KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004388011.1" /db_xref="GI:330824708" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10483164" /translation="MYVDVNGARTYCYTGGKPLEPGRPTVVFIHGVLNDHSVWALQSR YLAHNGWNVLAVDLPGHSKSAGEAPASVEQAAGFVVALLDALGIQRAALVGHSWGSLI ALEAAARLGARASHLALVGTAYPMKVSPALIESSLHEPEKALRMVNTFSRSTLAPPLG AGFWVYGAGMALGRRVLRSNPQVNVFHRGFVACDSYAGGEQAIAAIQCPVLFVLGTLD QMTHPKAAQGLIQAARAAGRQVQVAQLPVGHHQMSEAPDETLLALRDFLT" misc_feature complement(<2218122..2218304) /locus_tag="Alide2_2123" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" misc_feature complement(2217651..2218247) /locus_tag="Alide2_2123" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene complement(2218322..2219623) /locus_tag="Alide2_2124" /db_xref="GeneID:10483165" CDS complement(2218322..2219623) /locus_tag="Alide2_2124" /EC_number="2.5.1.47" /inference="protein motif:TFAM:TIGR01326" /note="TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: ajs:Ajs_1656 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme" /codon_start=1 /transl_table=11 /product="O-acetylhomoserine/O-acetylserine sulfhydrylase" /protein_id="YP_004388012.1" /db_xref="GI:330824709" /db_xref="GO:0003824" /db_xref="InterPro:IPR000277" /db_xref="InterPro:IPR006235" /db_xref="GeneID:10483165" /translation="MPGYTDPGFDTLALHAGARPDPATGARAVPIHLTTSFVFDSSDH AAALFNMERPGHVYSRISNPTNAVLEQRVAALEGGVGAIATASGQAALHLAVCTLMGA GGHIVASTALYGGSQNLLNYTLRRFGIETSFVKPGDLAGWRAAVRPNTRLFFGETVGN PGLEVLDIPAVSQIAHEAGVPLLVDSTLTSPWLIRPLEHGADLVYHSATKFLSGHGTV IGGVLVDGGSFDWEASGRFPELTQAYDGFHGMVFAEESTVGAFLLRARREGLRDFGAC MSPHTAWLILQGIETLPLRMERHMRNTERVVQFLASHPFVARVGHPLLESHPGHQLAQ RLLPRGAGSVFSFDLKGSRGQGKKFIEALKLFSHLANVGDCRSLVIHPASTTHHRLDD EALAAAGIGQGTIRLSIGLEDAGDLIDDLQRALKAAEKAGA" misc_feature complement(2218325..2219623) /locus_tag="Alide2_2124" /note="O-acetylhomoserine aminocarboxypropyltransferase; Validated; Region: PRK08134" /db_xref="CDD:181245" misc_feature complement(2218346..2219551) /locus_tag="Alide2_2124" /note="CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614" /db_xref="CDD:99738" misc_feature complement(order(2218541..2218543,2218781..2218786, 2218790..2218792,2218823..2218825,2218967..2218969, 2218973..2218975,2218997..2218999,2219261..2219263, 2219270..2219272,2219285..2219287,2219354..2219359, 2219363..2219368,2219444..2219446,2219450..2219452, 2219507..2219512,2219516..2219527)) /locus_tag="Alide2_2124" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99738" misc_feature complement(order(2218967..2218969,2218994..2218999, 2219003..2219005,2219069..2219071,2219156..2219158, 2219285..2219287,2219357..2219365)) /locus_tag="Alide2_2124" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:99738" misc_feature complement(order(2218994..2218999,2219003..2219005, 2219060..2219062,2219069..2219071,2219285..2219287, 2219357..2219365)) /locus_tag="Alide2_2124" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature complement(2218994..2218996) /locus_tag="Alide2_2124" /note="catalytic residue [active]" /db_xref="CDD:99738" gene 2219739..2220194 /locus_tag="Alide2_2125" /db_xref="GeneID:10483166" CDS 2219739..2220194 /locus_tag="Alide2_2125" /inference="protein motif:PFAM:PF00571" /note="KEGG: dia:Dtpsy_2047 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core" /codon_start=1 /transl_table=11 /product="CBS domain-containing protein" /protein_id="YP_004388013.1" /db_xref="GI:330824710" /db_xref="InterPro:IPR000644" /db_xref="GeneID:10483166" /translation="MKVSDILRLKGNTLYTVHPDEPLACAVQTMAERDIGSLVVMEHG DLVGMLTFREVIQVLVKNGGSVGTMLVRSAMDDAPLTCTLETDMDEVRRMMLGQHARY MPVMDKRMLMGVVSFYDVAKAVVDSQNFENKLLKAYIRDWPQEESPPAN" misc_feature 2219772..2220107 /locus_tag="Alide2_2125" /note="The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-...; Region: CBS_pair; cl10010" /db_xref="CDD:99705" misc_feature 2219778..2220098 /locus_tag="Alide2_2125" /note="FOG: CBS domain [General function prediction only]; Region: COG0517" /db_xref="CDD:30863" gene 2220288..2221382 /locus_tag="Alide2_2126" /db_xref="GeneID:10483167" CDS 2220288..2221382 /locus_tag="Alide2_2126" /EC_number="4.2.3.5" /inference="protein motif:TFAM:TIGR00033" /note="TIGRFAM: Chorismate synthase; KEGG: dia:Dtpsy_2046 chorismate synthase; PFAM: Chorismate synthase" /codon_start=1 /transl_table=11 /product="chorismate synthase" /protein_id="YP_004388014.1" /db_xref="GI:330824711" /db_xref="GO:0004107" /db_xref="InterPro:IPR000453" /db_xref="GeneID:10483167" /translation="MSGNTLGTLFCVTNFGESHGPAIGCVIDGCPPGMALCEADIQAD LDRRRPGTSRHVTQRNEPDAVEILSGVYEGRTTGTPIALLIRNQDQRSKDYGDIAQSF RPGHADYAYWHKYGLRDPRGGGRSSARLTAPTVAAGAVAKKWLAETYGTRFRACMAQL GELPIPFENWEHVPNNPFFAPVADVQAYEDYMDALRKSGDSCGARLRVQATGVPVGLG EPLYDKLDADIAHAMMGLNAVKGVEIGAGFASVAQRGTTHGDSLTPQGFAGNNAGGVL GGISTGQDIEVQLAIKPTSSIISPRESIDVHGRSTEVVTRGRHDPCVGIRAAPIAEAL LALVLMDHALRQRAQCGDVRQAVPPIPASI" misc_feature 2220321..2221313 /locus_tag="Alide2_2126" /note="Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304" /db_xref="CDD:143612" misc_feature order(2220321..2220338,2220357..2220359,2220363..2220365, 2220369..2220371,2220381..2220386,2220483..2220488, 2220492..2220497,2220516..2220521,2220525..2220527, 2220531..2220533,2220537..2220539,2220618..2220632, 2220660..2220665,2220687..2220689,2220870..2220872, 2220885..2220902,2220933..2220935,2220939..2220947, 2220957..2220959,2220963..2220968,2220975..2220983, 2220987..2220992,2220996..2220998,2221005..2221019, 2221026..2221031,2221035..2221040,2221050..2221055, 2221101..2221103,2221110..2221118,2221122..2221130, 2221149..2221151,2221155..2221166,2221173..2221175, 2221287..2221289) /locus_tag="Alide2_2126" /note="Tetramer interface [polypeptide binding]; other site" /db_xref="CDD:143612" misc_feature order(2220342..2220344,2220429..2220431,2220600..2220605, 2220663..2220674,2220681..2220683,2220996..2221001, 2221158..2221163,2221167..2221175,2221254..2221256, 2221266..2221268) /locus_tag="Alide2_2126" /note="Active site [active]" /db_xref="CDD:143612" misc_feature order(2220600..2220608,2220660..2220662,2220666..2220668, 2220993..2221001,2221161..2221163,2221167..2221175, 2221245..2221247,2221254..2221256,2221263..2221265) /locus_tag="Alide2_2126" /note="FMN-binding site [chemical binding]; other site" /db_xref="CDD:143612" gene complement(2221444..2221893) /locus_tag="Alide2_2127" /db_xref="GeneID:10483168" CDS complement(2221444..2221893) /locus_tag="Alide2_2127" /inference="protein motif:TFAM:TIGR00244" /note="KEGG: dia:Dtpsy_2045 transcriptional regulator NrdR; TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone" /codon_start=1 /transl_table=11 /product="ribonucleotide reductase regulator NrdR-like protein" /protein_id="YP_004388015.1" /db_xref="GI:330824712" /db_xref="GO:0008270" /db_xref="GO:0016564" /db_xref="InterPro:IPR003796" /db_xref="InterPro:IPR005144" /db_xref="GeneID:10483168" /translation="MKCPFCSHQDTQVIETRVSEDGDCIRRRRQCGACEKRFTTYERP EVNFPAVVKKDGRRVEYDRHKLLGSFKLALRKRPVSTVQIDSAIERIEEKLLHLGQRE VISSRIGELVMRELKKLDKVAYIRYASVYRSFEDIDEFRALVDEVRK" misc_feature complement(2221447..2221893) /locus_tag="Alide2_2127" /note="transcriptional regulator NrdR; Validated; Region: nrdR; PRK00464" /db_xref="CDD:179038" misc_feature complement(2221483..2221743) /locus_tag="Alide2_2127" /note="ATP cone domain; Region: ATP-cone; pfam03477" /db_xref="CDD:190653" gene complement(2221919..2223163) /locus_tag="Alide2_2128" /db_xref="GeneID:10483169" CDS complement(2221919..2223163) /locus_tag="Alide2_2128" /EC_number="2.1.2.1" /inference="protein motif:PRIAM:2.1.2.1" /note="KEGG: dia:Dtpsy_2044 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase" /codon_start=1 /transl_table=11 /product="glycine hydroxymethyltransferase" /protein_id="YP_004388016.1" /db_xref="GI:330824713" /db_xref="InterPro:IPR001085" /db_xref="GeneID:10483169" /translation="MYQRNILVEQTDPEVWAAIQAENRRQEEHIELIASENYASPAVM AAQGSQLTNKYAEGYPGKRYYGGCENVDVIEQLAIDRIKQLFGAEAANVQPNSGSQAN QAVLMAFLKPGDTILGMSLAEGGHLTHGMALNMSGKWFNVVSYGLNEKEEIDYDAFEA KAREHRPKLIIGGASAYALRIDFERMARVAKEVGAIFWVDIAHYAGLVVAGEYPNPVP HADVVTSTTHKSLRGPRGGIILMKAEHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEA LSPEFKAYQQQVAKNAKVFAETLTQRGLRIVSGRTESHVMLVDLRAKGITGKAAEAAL GKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEETRITANLLADVLENPDD EAHLAAVRAKVNALTSRFPVYR" misc_feature complement(2221946..2223139) /locus_tag="Alide2_2128" /note="Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of...; Region: SHMT; cd00378" /db_xref="CDD:99733" misc_feature complement(order(2222324..2222326,2222378..2222380, 2222747..2222752,2222855..2222857,2222876..2222878, 2222921..2222923,2222945..2222950,2223002..2223004, 2223056..2223058,2223071..2223073,2223098..2223103, 2223122..2223124,2223128..2223130)) /locus_tag="Alide2_2128" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99733" misc_feature complement(order(2222084..2222086,2222459..2222461, 2222477..2222482,2222555..2222557,2222564..2222566, 2222639..2222641,2222786..2222788,2222867..2222872, 2222969..2222971,2222999..2223001,2223059..2223061)) /locus_tag="Alide2_2128" /note="glycine-pyridoxal phosphate binding site [chemical binding]; other site" /db_xref="CDD:99733" misc_feature complement(order(2222084..2222086,2222477..2222479, 2222786..2222788,2223059..2223061)) /locus_tag="Alide2_2128" /note="active site" /db_xref="CDD:99733" misc_feature complement(order(2222132..2222134,2222402..2222404, 2222783..2222785,2222789..2222791,2222801..2222803, 2222972..2222974,2222993..2222995)) /locus_tag="Alide2_2128" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:99733" gene complement(2223405..2224217) /locus_tag="Alide2_2129" /db_xref="GeneID:10483170" CDS complement(2223405..2224217) /locus_tag="Alide2_2129" /inference="protein motif:PFAM:PF01464" /note="PFAM: Lytic transglycosylase-like, catalytic; KEGG: dia:Dtpsy_2043 lytic transglycosylase catalytic" /codon_start=1 /transl_table=11 /product="lytic transglycosylase catalytic subunit" /protein_id="YP_004388017.1" /db_xref="GI:330824714" /db_xref="InterPro:IPR008258" /db_xref="GeneID:10483170" /translation="MTASGKVIAGVRTVIADVVNGLLEVTHNGFALLGLVVVFAAVTL TARPDLRQIGEDELRGWLHARQVAEDGFPLEPAASDRAMAINPSELPREQAAVAYWLS KKYRVAPEPLAALVTEAYEIGSRTKLDPTLILAIIAVESSFNPFAQSAVGAQGLMQVM TRVHTDKYEGFGGQLAAFDPVANLRVGVKVLQECIARAGSLEGGLRYYVGAANLPDDG GYVAKVLAEHFRLRQVAGERKAAKPVLSTKAPAAPETAQPAGEKVALLDGGV" misc_feature complement(<2223618..>2224076) /locus_tag="Alide2_2129" /note="Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741" /db_xref="CDD:31084" misc_feature complement(2223540..2223830) /locus_tag="Alide2_2129" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature complement(order(2223648..2223650,2223738..2223740, 2223798..2223800)) /locus_tag="Alide2_2129" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature complement(2223798..2223800) /locus_tag="Alide2_2129" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 2224935..2228693 /locus_tag="Alide2_2130" /db_xref="GeneID:10483171" CDS 2224935..2228693 /locus_tag="Alide2_2130" /inference="protein motif:PFAM:PF05359" /note="PFAM: Protein of unknown function DUF748; Outer membrane protein, OmpA/MotB, C-terminal; KEGG: ajs:Ajs_1662 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388018.1" /db_xref="GI:330824715" /db_xref="InterPro:IPR006665" /db_xref="InterPro:IPR008023" /db_xref="GeneID:10483171" /translation="MIGYRVSQVIQTIKHHRWARRAAWLLACLLGLWLLAWLVVPPVA RSQIERHASEALGRKVTVSKVEFLPWTLEATVHGLSIASEDGKASQVQIARIYIDAEL QSLWRLAPVIDAVQVDEPVIHVTQTAPGHYDFDDVLDRLAQQPKTRDGEARPLRFALY NLALRGGALDFDDRTVGKVHMLRGLRIDVPFLSNFSADREVKVTPRLAFELNGSAFDT AAQTTPFAQNRQTEVNLHVDGFDLGPFSGYIPSRVPVRLKSGVLDADLKLGFEQEDAT PRLTISGGVRLHGVRTTDAAGEPLLDFDALQVALKDVRPLQRIVDVDAIDWHGVHVHL RRDVAGAVALPGLAQPADGADATAKPTPAPQDAAWQVRLGRVGLHDGVVDWTDASLPG GKAAWKAENLQAEAWAVALPFQQPLQFRLSTQLSGGAAKGDAARLAVQGQATDVQAQA AVSVRGLSMAMAAPYLAGVLKPSLAGMLDADLGLARNGDAMAAKVATLSLGKLALDCA AAEKKCRTLRTAGIADAAKTSLAEAGRLEVSDVLVQLPQRSVTLGRVLVKQPRVLVSR AAKGGWMFEEWLPDAPEAASKGKPAAAAPAPWKLKLAALEVEGASLAFRDDAAARPVA LNASGLQLRARNFSYDDGRITPVEVHLDARVAAGRAEPGRLSYEGTVAMAPALAVQGR VRAQHVPVHAFEPYVTSDLNVDILRAEGSFAGDLRYVQETAGPAVSVAGDMSLDEVRV RAKDDVAADDEGKGGRRIADRGEELLRWKSLGLRGVAVNLKPGRPLALDVRETALSDF FARIIVHENGRINLQDIRKGAATEEVAAAPPKDAAAAAVTGTAQAAAQPADPMAPVIR FGPVALTNGSVHFSDYFIKPNYSADLSELTGRLSAFSSVPSEAGGEPQMAELELRGRA QGTASLEVSGKLNPLAKPLALDIQARMRDLELPPLSPYSIKYAGHGIERGKLSMDVAY KVQPDGQLTATNKLVLHQLAFGDPVEGAPASLPVRLAVALLADRNGVIDVDLPISGSL NDPQFSLGGVILKVIGNLVMKAITAPFSLLAGVFSGADEQGSIAFAPGSAALDDKARQ QLDKIAQELNNRPALKVTVAGWAQPQAEEEAWKRLRLRDLVQAQKRRAAVRAGESAAD VAPVSDAEYPALLKEAYRRADMKKPRNLVGLAKDLPQGEMEALLLKSIEVPGNAMQDL ALARGVAVRDYLASRQVALDRLFVGASKLQPAGEGGWTPKAELTLAAR" misc_feature 2225049..>2225594 /locus_tag="Alide2_2130" /note="Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]; Region: AsmA; COG2982" /db_xref="CDD:32801" misc_feature 2225397..2225858 /locus_tag="Alide2_2130" /note="Domain of Unknown Function (DUF748); Region: DUF748; pfam05359" /db_xref="CDD:191261" misc_feature 2226039..>2226335 /locus_tag="Alide2_2130" /note="Domain of Unknown Function (DUF748); Region: DUF748; pfam05359" /db_xref="CDD:191261" misc_feature 2226750..2227247 /locus_tag="Alide2_2130" /note="Domain of Unknown Function (DUF748); Region: DUF748; pfam05359" /db_xref="CDD:191261" misc_feature 2227497..2227964 /locus_tag="Alide2_2130" /note="Domain of Unknown Function (DUF748); Region: DUF748; pfam05359" /db_xref="CDD:191261" misc_feature 2228148..>2228261 /locus_tag="Alide2_2130" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cl02931" /db_xref="CDD:194484" gene 2228917..2231514 /locus_tag="Alide2_2131" /db_xref="GeneID:10483172" CDS 2228917..2231514 /locus_tag="Alide2_2131" /inference="protein motif:PFAM:PF03993" /note="PFAM: Protein of unknown function DUF349; KEGG: dia:Dtpsy_2041 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388019.1" /db_xref="GI:330824716" /db_xref="InterPro:IPR007139" /db_xref="GeneID:10483172" /translation="MSDAPEATPVQNKTSEPHPLDALTGGAFSAATSGERSARIREWL ATQPATDKLQEVFKELSARDKGAARAVRERLDEIRRAQGQAAVAAEWTAKAEALLATA QLNIADALAWQRDAAKAGAPLSREPLSTLKAQLSERVKTIEDLQHRVQVQREAAVLLA QRIEVLSTKPWKDAQAALELLSADVGHWQEQAQELTGDAAWPSVDVRFPAQLESSRTQ LLVVWEAFQSALAQTAAAAEDENAPLPPVPVWADELRLARGLPAEAAAAKAAPRAAAK PKVDPEVREKAMQAVREALSKLEEETAQGHGKASVGAATALRAVLKVHGKLIDAELER KVHAALVAAGELEGWQRWSADQLREDLVARAEALLQRPEGQALGGRKMQESLRQLREQ WKQADQGAPANHALWKRFDDACNAAHKVVEAWLERVRAEGAEHRAQRMALVEEVKAWA QEQAGAAAADWRAVNRALYQFAERWRAGGHVSEKVFAELQPLWKQAMALAAAPLESAQ KASLERRQAMIEEAASLGAAASLRIDAIKALQQRWQAEAQSVPLDRKQEQKLWDAFRK PLDEAFNRKSAERERSAAELSARDRAVLDASKALEAANASNDAQRIREAVAALEAALK DQEGAGALGQKQPVTQEGQAQEAMDSGVNEANAKPVPAAAARPVVAVRGDDRPGMRRS EPAPQARAGRAAGDRREGRDGRAPRDAAPRGPRLGDTAFRAQRDAMEHAQLALRKLAA QAHGEALTRLMTAWKSRDAAQVPSVQELGGKVSAGVRSSWAQAIGAPAGAAAEQALLR LEIAAELPTPAEQLAARRAMQLQMLTRRNEPAPAETWGQDAALVFAGASDEASARRLQ GVLKVLLRK" misc_feature 2230129..2230371 /locus_tag="Alide2_2131" /note="Domain of Unknown Function (DUF349); Region: DUF349; pfam03993" /db_xref="CDD:190824" gene complement(2231627..2231711) /locus_tag="Alide2_R0029" /note="tRNA-Leu4" /db_xref="GeneID:10483173" tRNA complement(2231627..2231711) /locus_tag="Alide2_R0029" /product="tRNA-Leu" /db_xref="GeneID:10483173" gene complement(2231888..2231972) /locus_tag="Alide2_R0030" /note="tRNA-Leu3" /db_xref="GeneID:10483174" tRNA complement(2231888..2231972) /locus_tag="Alide2_R0030" /product="tRNA-Leu" /db_xref="GeneID:10483174" gene 2231992..2234283 /locus_tag="Alide2_2132" /db_xref="GeneID:10483175" CDS 2231992..2234283 /locus_tag="Alide2_2132" /inference="protein motif:TFAM:TIGR02063" /note="SMART: Ribonuclease II/R; Cold shock protein; RNA-binding domain, S1; manually curated; KEGG: dia:Dtpsy_1240 ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA-binding domain" /codon_start=1 /transl_table=11 /product="ribonuclease R" /protein_id="YP_004388020.1" /db_xref="GI:330824717" /db_xref="GO:0003723" /db_xref="GO:0004518" /db_xref="GO:0004540" /db_xref="InterPro:IPR001900" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR004476" /db_xref="InterPro:IPR011129" /db_xref="InterPro:IPR011805" /db_xref="InterPro:IPR013223" /db_xref="InterPro:IPR022967" /db_xref="GeneID:10483175" /translation="MYSKKKYAGASATQISSSDEIEGTVQGHRDGHGFVVRDDGEPDI YIPPNEMRAVLHKDRVRVRIVRQDRRGRPEGRVVEIVERPPQPIIGRLLQESGVWLVA PEDKRYGQDVLIPKGATGAAATGQVVVVELTEPPALFGQPVGRVVEVLGEVDDPGMEV EIAVRKYGVPHEFSEACLAQAKALPDKVRAQDKRHRVDLTDIPLVTIDGEDARDFDDA VYCEPAKIGRAKGWRLLVAIADVSHYVETGSAIDVDAYDRATSVYFPRRVIPMLPEKL SNGLCSLNPHVERLCMVCDMLVTAKGEVHAYQFYPAVMLSHARFTYNEVAAVLANTRG PEAARHEERVEDLLNLHDVYRALLAARQARGAVDFETTETQIVCDDNGRIEKIEPRVR TEAHRLIEEAMLAANVCSADFIAQAGRPALYRVHEGPTPEKQEILRAYLKAMGVGMSI GDEPRPQEFQAIAEATKDRPDAQQIHTMLLRSMQQAIYTPINSGHFGLAFEAYTHFTS PIRRYPDLLVHRVIKSILAGTKYMLPALPTPGEAQFKLAKRLASKAAEPTIRPAKAGA ASVRETQAWEAAGLHCSANERRADEASRDVEAWLKCQYMREHLGEEYSGVVSAVTSFG IFVTLDALYVEGLVHITELGGEYFKFDEARQELRGERTGIRYAIGARVRVQVSRVDLD GRRIDFRLVDEAGDVVPGKSSKAREPGKHQPHEKGRDQRMADARPFDKAGGLRRSKDQ APPSGGKKQGSGKSGHKGRRSRG" misc_feature 2231998..2234064 /locus_tag="Alide2_2132" /note="ribonuclease R; Region: RNase_R; TIGR02063" /db_xref="CDD:188196" misc_feature 2232058..2232231 /locus_tag="Alide2_2132" /note="S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain...; Region: S1_like; cl09927" /db_xref="CDD:195927" misc_feature 2232577..2233569 /locus_tag="Alide2_2132" /note="RNB domain; Region: RNB; pfam00773" /db_xref="CDD:189712" misc_feature 2233816..2234064 /locus_tag="Alide2_2132" /note="S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an...; Region: S1_RNase_R; cd04471" /db_xref="CDD:88436" misc_feature order(2233843..2233845,2233867..2233869,2233900..2233902, 2233906..2233908) /locus_tag="Alide2_2132" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88436" gene 2234306..2235061 /locus_tag="Alide2_2133" /db_xref="GeneID:10483176" CDS 2234306..2235061 /locus_tag="Alide2_2133" /inference="protein motif:PFAM:PF00106" /note="PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1241 short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_004388021.1" /db_xref="GI:330824718" /db_xref="GO:0016491" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10483176" /translation="MSDTTKIAIVTGAGTGIGKAAALALLRDGWSVALAGRREQPLLD VAQQARAGERALPVPTDVADPEAVRHLFDRTVERFGRVDLLFNNAGVGAPAIPLEDLS VQQWKTVVDINLNGMFFCIQNAFRVMKAQSPRGGRIINNGSISAHTPRPNSIAYTATK HAVMGMTKTASLDGRKYDIAVGQIDVGNAQTELAQRMTQGVQQANGQIAAEPLMDVAI VGQSVLYMANLPLEANVMFHTVMATKMPFAGRG" misc_feature 2234384..2234986 /locus_tag="Alide2_2133" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature order(2234411..2234419,2234483..2234491,2234567..2234575, 2234639..2234641,2234726..2234734,2234771..2234773, 2234783..2234785,2234861..2234872,2234876..2234881) /locus_tag="Alide2_2133" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature order(2234642..2234644,2234732..2234734,2234771..2234773, 2234783..2234785) /locus_tag="Alide2_2133" /note="active site" /db_xref="CDD:187544" gene 2235152..2235802 /locus_tag="Alide2_2134" /db_xref="GeneID:10483177" CDS 2235152..2235802 /locus_tag="Alide2_2134" /inference="similar to AA sequence:KEGG:Aave_3388" /note="KEGG: aav:Aave_3388 cytochrome c553-like protein" /codon_start=1 /transl_table=11 /product="cytochrome c553-like protein" /protein_id="YP_004388022.1" /db_xref="GI:330824719" /db_xref="GeneID:10483177" /translation="MRPRVLACTACHGKEGRATPGGYFPRIAGKPAGYLYNQLLNFRD GRRSYPQMSRLLEHLTDDYLREIAGYFSALDLPYVSAAPVPASRALIERGRQLVRHGD EGRKIPACVQCHGDAMTGVAPFVPGLLGLSREYVGSQLGAWQTGQRRAQAPDCMAEIA RQLTVEDVGAVSAWLAAQAVPGQGKPAMSFKGELTMPCGSVRPPHASAPATGRGAR" misc_feature <2235170..2235451 /locus_tag="Alide2_2134" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature 2235386..2235712 /locus_tag="Alide2_2134" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 2235799..2237088 /locus_tag="Alide2_2135" /db_xref="GeneID:10483178" CDS 2235799..2237088 /locus_tag="Alide2_2135" /EC_number="1.1.99.3" /inference="protein motif:PRIAM:1.1.99.3" /note="KEGG: aav:Aave_3387 cytochrome c, class I; PFAM: Cytochrome c, class I" /codon_start=1 /transl_table=11 /product="gluconate 2-dehydrogenase" /protein_id="YP_004388023.1" /db_xref="GI:330824720" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10483178" /translation="MSVARVLLGWAVGCVVLAVAVGGGVVALNRLDEAALPADDAPLP ATSEAIARGEYLARAGNCMSCHTRQGGPAYAGGRAIDTPFGAVHASNLTPDDATGIGL WSAGEFWRALHNGRSRDGRLLYPAFPYPSYTHITRADSDAIYAYLRSLPPVEQPNRPH ALRFPFNTQVALAAWRALFFRPGVLLEQPARSAEWNRGAYLVLGLGHCAACHTPRNAL GAPRADAAFRGGLIPVQNWYAPALTSPHEAAVGAWPVEEAVALLKTGVSPQATVSGPM AEVVFRSLQYLDDADLRAIVLYLRSLPQEDGPAPPTARPSGAVMEKGRDIYRQQCVQC HGEQGEGRRGAFPTLAGNRAVLLADTTNLVQVVLRGGYLPATAGNPRPHGMPPFTQSL RDEEIASVLSYIRNAWGNEAAKVDTIDVYRARERRGS" misc_feature 2236273..2236704 /locus_tag="Alide2_2135" /note="Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010" /db_xref="CDD:32193" misc_feature <2236657..>2236854 /locus_tag="Alide2_2135" /note="Cytochrome c [Energy production and conversion]; Region: COG3258" /db_xref="CDD:33069" misc_feature 2236759..2237022 /locus_tag="Alide2_2135" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 2237109..2237492 /locus_tag="Alide2_2136" /db_xref="GeneID:10483179" CDS 2237109..2237492 /locus_tag="Alide2_2136" /inference="protein motif:PFAM:PF00085" /note="PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1244 hypothetical protein" /codon_start=1 /transl_table=11 /product="thioredoxin domain-containing protein" /protein_id="YP_004388024.1" /db_xref="GI:330824721" /db_xref="InterPro:IPR013766" /db_xref="GeneID:10483179" /translation="MGMGSAAAPSSAHLPSSGPWWVVCLCAQWCGACREYRGVFEELA GDWPQVRFEWVDVEDEENVVGEVDVETFPTILIADGQVARFLGPVLPQAQVLGRMLQG MRGDPGAPAADAQAQALFRRIAASR" misc_feature 2237172..2237387 /locus_tag="Alide2_2136" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature order(2237196..2237198,2237205..2237207) /locus_tag="Alide2_2136" /note="catalytic residues [active]" /db_xref="CDD:48496" gene 2237693..2238283 /locus_tag="Alide2_2137" /db_xref="GeneID:10483180" CDS 2237693..2238283 /locus_tag="Alide2_2137" /inference="protein motif:HAMAP:MF_01077" /note="KEGG: dia:Dtpsy_1245 hypothetical protein; HAMAP: Ribosome maturation factor RimP; PFAM: Ribosome maturation factor RimP" /codon_start=1 /transl_table=11 /product="ribosome maturation factor rimP" /protein_id="YP_004388025.1" /db_xref="GI:330824722" /db_xref="InterPro:IPR003728" /db_xref="GeneID:10483180" /translation="MALQQIVEQTVAGLGYDLVEIERSAGGLLRITIDLMWAPPADGG EVQATGQFVTVEDCEKVTRQLQFALEVEGVDYKRLEVSSPGIDRLLRNEQDFTRFEGE VIDITLKEPLGAAAGGQVAANRKKFRGTLERVPAGGWQIVWSDEPPVKPGQRVSKKRV PAPLQALGFTLDELREARLAPIVDFKGRGARPGAAG" misc_feature 2237693..2238235 /locus_tag="Alide2_2137" /note="ribosome maturation protein RimP; Reviewed; Region: PRK00092" /db_xref="CDD:178857" misc_feature 2237699..>2238094 /locus_tag="Alide2_2137" /note="The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members...; Region: Sm_like; cl00259" /db_xref="CDD:193733" misc_feature 2237921..2238235 /locus_tag="Alide2_2137" /note="The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members...; Region: Sm_like; cl00259" /db_xref="CDD:193733" misc_feature order(2238002..2238022,2238065..2238103,2238110..2238124) /locus_tag="Alide2_2137" /note="Sm1 motif; other site" /db_xref="CDD:99752" misc_feature order(2238011..2238013,2238017..2238022,2238065..2238067, 2238071..2238073,2238089..2238091,2238116..2238118, 2238167..2238175,2238200..2238205,2238209..2238226) /locus_tag="Alide2_2137" /note="D3 - B interaction site; other site" /db_xref="CDD:99752" misc_feature order(2238011..2238013,2238017..2238019,2238068..2238070, 2238203..2238205,2238212..2238226) /locus_tag="Alide2_2137" /note="D1 - D2 interaction site; other site" /db_xref="CDD:99752" misc_feature order(2238014..2238022,2238095..2238097,2238170..2238175, 2238197..2238208,2238212..2238226) /locus_tag="Alide2_2137" /note="Hfq - Hfq interaction site; other site" /db_xref="CDD:99752" misc_feature order(2238095..2238097,2238101..2238103,2238200..2238202) /locus_tag="Alide2_2137" /note="RNA binding pocket [nucleotide binding]; other site" /db_xref="CDD:99752" misc_feature order(2238167..2238175,2238197..2238223) /locus_tag="Alide2_2137" /note="Sm2 motif; other site" /db_xref="CDD:99752" gene 2238352..2239836 /locus_tag="Alide2_2138" /db_xref="GeneID:10483181" CDS 2238352..2239836 /locus_tag="Alide2_2138" /inference="protein motif:TFAM:TIGR01953" /note="TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA-binding domain; KEGG: dia:Dtpsy_1246 NusA antitermination factor; SMART: RNA-binding domain, S1; K Homology" /codon_start=1 /transl_table=11 /product="NusA antitermination factor" /protein_id="YP_004388026.1" /db_xref="GI:330824723" /db_xref="GO:0003723" /db_xref="GO:0030528" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR010213" /db_xref="InterPro:IPR010214" /db_xref="InterPro:IPR013735" /db_xref="InterPro:IPR022967" /db_xref="GeneID:10483181" /translation="MNRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGDVD LRVSIDRDSGDYETFRRWLVVPDDAGLQNPDAEELLMDARERVPDIEVGEYIEEPVES VPIGRIGAMAAKQVILQKIRDAEREMLLNDFMSRGEKIFTGTVKRMDKGDLIIESGRV EGRLRRSEMIPKENLRNGDRVRAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEI EQGLLEIKSCARDPGSRAKIAVLSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIV LWSDDPAQFVIGALAPANVQSIVVDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELT GWKINIMDAAESAQKQADETDAARRLFMEKLDVDEEIADILIAEGFESLEEVAYVPLQ EMLEIESFDEDTVNELRVRAKDALLTMEIAREESMGSVSQDLRDLEGLTPELIAKLAD AGVNTRDDLADLAIDELTELTGQSAEDAKALIMKAREHWFTGQE" misc_feature 2238352..2239767 /locus_tag="Alide2_2138" /note="transcription elongation factor NusA; Validated; Region: nusA; PRK09202" /db_xref="CDD:181696" misc_feature 2238361..2238735 /locus_tag="Alide2_2138" /note="NusA N-terminal domain; Region: NusA_N; pfam08529" /db_xref="CDD:192057" misc_feature 2238754..2238954 /locus_tag="Alide2_2138" /note="S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and...; Region: S1_NusA; cd04455" /db_xref="CDD:88421" misc_feature order(2238787..2238789,2238811..2238813,2238838..2238840, 2238844..2238846) /locus_tag="Alide2_2138" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88421" misc_feature order(2238793..2238795,2238805..2238807,2238832..2238834, 2238838..2238840,2238937..2238939) /locus_tag="Alide2_2138" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:88421" misc_feature 2239195..2239374 /locus_tag="Alide2_2138" /note="NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134" /db_xref="CDD:48406" misc_feature 2239312..2239323 /locus_tag="Alide2_2138" /note="G-X-X-G motif; other site" /db_xref="CDD:48406" misc_feature 2239450..2239599 /locus_tag="Alide2_2138" /note="transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954" /db_xref="CDD:131009" misc_feature 2239678..2239818 /locus_tag="Alide2_2138" /note="transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954" /db_xref="CDD:131009" gene 2239861..2242692 /locus_tag="Alide2_2139" /db_xref="GeneID:10483182" CDS 2239861..2242692 /locus_tag="Alide2_2139" /inference="protein motif:TFAM:TIGR00487" /note="KEGG: dia:Dtpsy_1247 translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; Translation initiation factor IF- 2, domain 3" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-2" /protein_id="YP_004388027.1" /db_xref="GI:330824724" /db_xref="GO:0003743" /db_xref="GO:0005525" /db_xref="InterPro:IPR000178" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006847" /db_xref="InterPro:IPR013575" /db_xref="InterPro:IPR023115" /db_xref="GeneID:10483182" /translation="MSSNTVAEFAAELKKSPETLLDQLKSAGVAKSTATDLLNETDKQ KLLAYLQASHGTAAGDRKKITLVKKSTSEIKQADATGKARTIQVEVRKKRTFIKREDD AGAASESAVPSRSVEDLELARREEEARRQAELISRQEEELAAARREREAREQREREAE ERAAAYAAQQAEKKAQESAEKQEAQREAAAEAEARANAQAEARAKAEAESKARAAEEA ARAADLDERRRKALAEAEAIRAMMAAPKKVLVAKKPEEVKPAAAKTAAGADAKKGTLH KPAATAGGGARAGAPAAPGSGKEVKSAKLSSSWANDATKKKEIKTRGDSSGGVGRNNW RSGPRGRRGNDRNEQHQPQVAAEFRAIEVHVPETITVAELAHKMAIKASEVIKALMKM GQMVTINQPLDQDTAMIVVEEMGHKAVVAALDDPEAFTAEEVSSHQAEALPRAPVVTV MGHVDHGKTSLLDYIRRAKVAPGEAGGITQHIGAYHVKTPRGIVTFLDTPGHEAFTAM RARGAQATDIVILVCAADDGVMPQTREAIKHAKAAGVPIVVAITKADKHEANPEKVKQ ELVAEEVVPEEYGGDSPFVAVSSKTGMGIDELLEQVLLQAEVLELKAPVDAMAKGLVI EAQLDKGRGPVATVLVQSGTLKVGDVVLAGQTFGRVRAMTDENGRTTKDAGPSIPVEI QGLSEVPQAGDEFMVLSDERRAREIATYRAGKFRNTKLAKQQAAKLESVFSEMTAGEV QHLPIIIKADVQGSQEALAASLLKLSTDEIKVQLVYAGVGGISESDVNLAIASKAIVI GFNVRADAGARKTAEANGVQLHYYNIIYDAVDELKAAMSGMLAPEQREEVIGTAEIRT VFVATKIGTIAGSYITSGQVTRGCRFRLLRDNVVIYTGEVESVRRLKDDVKEVKEGFE CGIKLRNYTDIKEGDQLELFEIKEIARTL" misc_feature 2239861..2240010 /locus_tag="Alide2_2139" /note="Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760" /db_xref="CDD:147093" misc_feature 2240041..2240160 /locus_tag="Alide2_2139" /note="Bacterial translation initiation factor IF-2 associated region; Region: IF2_assoc; pfam08364" /db_xref="CDD:192015" misc_feature 2240953..2242689 /locus_tag="Alide2_2139" /note="translation initiation factor IF-2; Region: IF-2; TIGR00487" /db_xref="CDD:161900" misc_feature 2240956..2241111 /locus_tag="Alide2_2139" /note="Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760" /db_xref="CDD:147093" misc_feature 2241196..2241648 /locus_tag="Alide2_2139" /note="IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases...; Region: IF2_eIF5B; cd01887" /db_xref="CDD:133287" misc_feature 2241214..2241237 /locus_tag="Alide2_2139" /note="G1 box; other site" /db_xref="CDD:133287" misc_feature order(2241217..2241219,2241223..2241225,2241235..2241240, 2241247..2241249,2241256..2241261,2241307..2241312, 2241364..2241369,2241436..2241441,2241544..2241546, 2241556..2241558) /locus_tag="Alide2_2139" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133287" misc_feature order(2241220..2241240,2241367..2241369,2241514..2241519, 2241523..2241528,2241622..2241630) /locus_tag="Alide2_2139" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133287" misc_feature 2241289..2241309 /locus_tag="Alide2_2139" /note="Switch I region; other site" /db_xref="CDD:133287" misc_feature 2241295..2241297 /locus_tag="Alide2_2139" /note="G2 box; other site" /db_xref="CDD:133287" misc_feature 2241352..2241363 /locus_tag="Alide2_2139" /note="G3 box; other site" /db_xref="CDD:133287" misc_feature 2241358..2241414 /locus_tag="Alide2_2139" /note="Switch II region; other site" /db_xref="CDD:133287" misc_feature 2241514..2241525 /locus_tag="Alide2_2139" /note="G4 box; other site" /db_xref="CDD:133287" misc_feature 2241622..2241630 /locus_tag="Alide2_2139" /note="G5 box; other site" /db_xref="CDD:133287" misc_feature 2241715..2241996 /locus_tag="Alide2_2139" /note="This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the...; Region: IF2_mtIF2_II; cd03702" /db_xref="CDD:58093" misc_feature 2242036..2242362 /locus_tag="Alide2_2139" /note="Translation-initiation factor 2; Region: IF-2; pfam11987" /db_xref="CDD:152422" misc_feature 2242408..2242656 /locus_tag="Alide2_2139" /note="mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation...; Region: mtIF2_IVc; cd03692" /db_xref="CDD:58083" gene 2242696..2243076 /locus_tag="Alide2_2140" /db_xref="GeneID:10483183" CDS 2242696..2243076 /locus_tag="Alide2_2140" /inference="protein motif:TFAM:TIGR00082" /note="KEGG: aav:Aave_3382 ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A; PFAM: Ribosome-binding factor A" /codon_start=1 /transl_table=11 /product="ribosome-binding factor A" /protein_id="YP_004388028.1" /db_xref="GI:330824725" /db_xref="InterPro:IPR000238" /db_xref="GeneID:10483183" /translation="MAAKKSSTPNRGFKVADQIQRDLAELIRDLKDPRIGMCTLQAVE VTPDYAHAKVFFSVLVGDGQATQEALNQAAGFLRNGLFKRLSIHTVPTLHFVFDRTTE RASDMNALIARAVASRSKDDDVND" misc_feature 2242708..2243058 /locus_tag="Alide2_2140" /note="Ribosome-binding factor A; Region: RBFA; cl00542" /db_xref="CDD:186071" gene 2243069..2244073 /locus_tag="Alide2_2141" /db_xref="GeneID:10483184" CDS 2243069..2244073 /locus_tag="Alide2_2141" /inference="protein motif:HAMAP:MF_01080" /note="TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: ajs:Ajs_2559 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase B" /protein_id="YP_004388029.1" /db_xref="GI:330824726" /db_xref="InterPro:IPR002501" /db_xref="InterPro:IPR014780" /db_xref="GeneID:10483184" /translation="MTERAPRVRVQRRPVHGVLLLDKPLGFSSNDALQKVKWLLRAEK AGHTGTLDPLATGVLPLCFGAATKFSALQLDAPKTYEAIALLGTTTTTGDAEGEVLER RAVDPAQLTPERLAEVQRQFTGPIRQVPPMHSALKKDGKALYEYARAGVEVERPARDV TIHALNLALTLAGQAQAAIKITVTCSKGTYIRTLGEDIGGALGCGAHLTFLRRLDTGG LGVERCVTLAQIEALDEDARLGLLQPVQTLLAGHVVVTLGEQDAGRFLSGMRRRGPWP DAGAVAVYGERPHALLGVGHVLQGELIPDRLLSPLEIQQILQGAPRAHIERGTLETTL " misc_feature 2243114..2243998 /locus_tag="Alide2_2141" /note="tRNA pseudouridine synthase B; Provisional; Region: truB; PRK01851" /db_xref="CDD:179343" misc_feature 2243117..2243959 /locus_tag="Alide2_2141" /note="PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of...; Region: PseudoU_synth_EcTruB; cd02573" /db_xref="CDD:30022" misc_feature order(2243150..2243152,2243156..2243158,2243165..2243167, 2243201..2243209,2243213..2243227,2243267..2243269, 2243276..2243281,2243288..2243290,2243300..2243302, 2243306..2243308,2243465..2243479,2243540..2243542, 2243627..2243644,2243705..2243707) /locus_tag="Alide2_2141" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:30022" misc_feature order(2243213..2243224,2243642..2243644) /locus_tag="Alide2_2141" /note="active site" /db_xref="CDD:30022" gene 2244070..2245899 /locus_tag="Alide2_2142" /db_xref="GeneID:10483185" CDS 2244070..2245899 /locus_tag="Alide2_2142" /inference="protein motif:TFAM:TIGR01394" /note="KEGG: ajs:Ajs_2558 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal" /codon_start=1 /transl_table=11 /product="GTP-binding protein TypA" /protein_id="YP_004388030.1" /db_xref="GI:330824727" /db_xref="GO:0005525" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006298" /db_xref="GeneID:10483185" /translation="MSKQIRNIAIIAHVDHGKTTMVDQLLRQSGTFAAHEKVVDTVMD SNAIERERGITILAKNCAVSWEGTHINILDTPGHADFGGEVERALSMVDGVVLLIDAQ EGPMPQTRFVTKKALALGLKPIVVVNKVDKPGARPDYVVNAAFDLFDKLGATDEQLDF PVVYASGINGWSSLEQGAPGEQWGPDMSALFNTILKHVPSVKGDPAAPVQMQVSALDY STFVGRIGVGRITQGTLKAGQDVLVMAGPDGASYKGRINQIHQFQGLDRVQVSEAGPS EIVLINGIENVGIGETITDPANPQPLPMLKIDEPTLTMNFCVNTSPLAGREGKFVTSR QIWDRLQRELRSNVALRVKETDEDGIFEVSGRGELHLTILLEEMRREGYELAVSKPRV VFKDIDGVRCEPIELVTADIEEGHQGGVMQALGERKGELVNMEPDGRGRVRLEYRIPA RGLIGFTNEFLNLTRGSGLISNIFDSYEPHKGEIGGRKNGVLISMDDGEIFTYALGKL DDRGRMFVRAGDPVYEGMIVGVHNRDNDLVVNATRTKQLTNFRVSGKEDAIKVTPPIE LSLEYGVEFIEEDELVEITPKSIRLRKRHLKEHERKRASREGA" misc_feature 2244082..2245836 /locus_tag="Alide2_2142" /note="GTP-binding protein TypA/BipA; Region: TypA_BipA; TIGR01394" /db_xref="CDD:162336" misc_feature 2244082..2244669 /locus_tag="Alide2_2142" /note="TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella...; Region: TypA_BipA; cd01891" /db_xref="CDD:133291" misc_feature 2244103..2244126 /locus_tag="Alide2_2142" /note="G1 box; other site" /db_xref="CDD:133291" misc_feature order(2244106..2244108,2244112..2244114,2244124..2244129, 2244136..2244138,2244145..2244150,2244244..2244249, 2244301..2244306,2244373..2244378,2244484..2244486, 2244496..2244498) /locus_tag="Alide2_2142" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133291" misc_feature order(2244112..2244129,2244451..2244456,2244460..2244462, 2244565..2244573) /locus_tag="Alide2_2142" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133291" misc_feature 2244211..2244246 /locus_tag="Alide2_2142" /note="Switch I region; other site" /db_xref="CDD:133291" misc_feature 2244232..2244234 /locus_tag="Alide2_2142" /note="G2 box; other site" /db_xref="CDD:133291" misc_feature 2244289..2244300 /locus_tag="Alide2_2142" /note="G3 box; other site" /db_xref="CDD:133291" misc_feature 2244295..2244351 /locus_tag="Alide2_2142" /note="Switch II region; other site" /db_xref="CDD:133291" misc_feature 2244451..2244462 /locus_tag="Alide2_2142" /note="G4 box; other site" /db_xref="CDD:133291" misc_feature 2244565..2244573 /locus_tag="Alide2_2142" /note="G5 box; other site" /db_xref="CDD:133291" misc_feature 2244697..2244954 /locus_tag="Alide2_2142" /note="BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a...; Region: BipA_TypA_II; cd03691" /db_xref="CDD:58082" misc_feature 2245276..2245512 /locus_tag="Alide2_2142" /note="BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a...; Region: BipA_TypA_C; cd03710" /db_xref="CDD:58063" gene complement(2245967..2246845) /locus_tag="Alide2_2143" /db_xref="GeneID:10483186" CDS complement(2245967..2246845) /locus_tag="Alide2_2143" /inference="similar to AA sequence:KEGG:Vapar_3272" /note="KEGG: vap:Vapar_3272 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388031.1" /db_xref="GI:330824728" /db_xref="GeneID:10483186" /translation="MQSRPTQKALPPTSPAPAPAVAPRTLPLHAVPSTLLIPLAARAA GDACFPHLACGDAEASRQLRHLGVDVSTYLADRPTVLNVLWRTRRIRAAGRAFFARHP HAWGINLGCGLSHYFQWLDNGRNTWVDADLPEVMALRRALDPPLSPRLRRAILDITHP QWWQALHLPRRALAQPLFVVCEGVLMYLRPAQARQVLAQFATHAPAGSRLWVDVLPQC AVGHARWHSSVGRTGAEFQWGIRHPDELCASHPRLRLLQLHSVAECYGWLGRGLDALW NPWIGMPLYGLAELGV" misc_feature complement(2245976..2246758) /locus_tag="Alide2_2143" /note="Leucine carboxyl methyltransferase; Region: LCM; cl01306" /db_xref="CDD:194096" gene 2247179..2248270 /locus_tag="Alide2_2144" /db_xref="GeneID:10483187" CDS 2247179..2248270 /locus_tag="Alide2_2144" /EC_number="3.1.2.4" /inference="protein motif:PRIAM:3.1.2.4" /note="KEGG: ajs:Ajs_2556 3-hydroxyisobutyryl-CoA hydrolase; PFAM: Crotonase, core" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyryl-CoA hydrolase" /protein_id="YP_004388032.1" /db_xref="GI:330824729" /db_xref="InterPro:IPR001753" /db_xref="GeneID:10483187" /translation="MTEMATEVVAEVRGRVGCITLNRPKALNALSLGMVRDLMATLLA WQHDDKVLAVAIRGNGREGPFGAFCAGGDIRFLHAAGSVGNPQLEDFFTEEYALNHLI HNYGKPYIAFMDGIVMGGGMGISQGGSLRIVTERTKMAMPETAIGLFPDVGGGYFLSR CPGRVGEWLALTGDTIGAADAIAFGLADGFLPADQQAAVWEGLGTQAFADGAAAQQWV ASKFVAAGACQISARTQIDQYFALDGVSAIVAALERANDDWARATAATLRKRSPLMLH VVLEQIRRARAMGLADDLRMERDMVRHCFYLRPGESETLEGIRALAVDKDQNPAWRPA RIEDVSPELVQAFFKSPWPAHAHPLAALR" misc_feature 2247188..2248228 /locus_tag="Alide2_2144" /note="3-hydroxyisobutyryl-CoA hydrolase; Provisional; Region: PRK05617" /db_xref="CDD:180165" misc_feature 2247200..2247781 /locus_tag="Alide2_2144" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(2247257..2247259,2247263..2247265,2247359..2247361, 2247386..2247400,2247524..2247526,2247530..2247538, 2247602..2247607,2247614..2247616) /locus_tag="Alide2_2144" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(2247392..2247394,2247536..2247538) /locus_tag="Alide2_2144" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(2247476..2247478,2247500..2247502,2247563..2247574, 2247608..2247619,2247635..2247637,2247641..2247649, 2247653..2247658,2247668..2247673,2247677..2247682, 2247686..2247691,2247698..2247700,2247731..2247733, 2247740..2247742) /locus_tag="Alide2_2144" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(2248221..2249063) /locus_tag="Alide2_2145" /db_xref="GeneID:10483188" CDS complement(2248221..2249063) /locus_tag="Alide2_2145" /inference="similar to AA sequence:KEGG:Ajs_2555" /note="KEGG: ajs:Ajs_2555 putative transmembrane anti-sigma factor" /codon_start=1 /transl_table=11 /product="putative transmembrane anti-sigma factor" /protein_id="YP_004388033.1" /db_xref="GI:330824730" /db_xref="GeneID:10483188" /translation="MNSPRPPLPPNGAELHALVDGRLPPEHAERLRASLDARTREEAD DWERQRALLRTLHADWLERPVPDALRQAADQLQDTHDGRSRWALWGGIAASWVLAFGL GWGLHGPWGGGATLAVAPSSPPLRFAQQAAVAHAVYQPEQRHPVEVTAAQQDHLVQWL SKRLARPLTVPHLQAQGFDLVGGRLLPGGSGARAQFMYQDTAGKRITLYLGALEDAQA EAFHFYSQGPVSGFYWVEHGFGYALSGELPRPALQALATAVYQQLQLSAAPPEGERAP ARGS" misc_feature complement(2248275..2249027) /locus_tag="Alide2_2145" /note="Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]; Region: COG5662" /db_xref="CDD:35221" gene complement(2249088..2249612) /locus_tag="Alide2_2146" /db_xref="GeneID:10483189" CDS complement(2249088..2249612) /locus_tag="Alide2_2146" /inference="protein motif:TFAM:TIGR02937" /note="KEGG: dia:Dtpsy_1254 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2" /codon_start=1 /transl_table=11 /product="ECF subfamily RNA polymerase sigma-24 subunit" /protein_id="YP_004388034.1" /db_xref="GI:330824731" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0016987" /db_xref="InterPro:IPR007627" /db_xref="InterPro:IPR013249" /db_xref="InterPro:IPR014284" /db_xref="GeneID:10483189" /translation="MNRAQIVEQLPGLRRYARALTGDAWAADDLVQDTLERACRKWLL WRSGSDLRAWLFTLMHNLYLNQRRGLLAVQALDAESLAALPGADGAASDVAIDLDRCL QRLPAEQRAVLLLVTLEDMAYADVARVLDIPVGTVMSRLSRARSRMRELLEQAPAHAP AFPRDPSTPLRRMK" misc_feature complement(2249409..2249585) /locus_tag="Alide2_2146" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature complement(<2249202..2249321) /locus_tag="Alide2_2146" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cl01055" /db_xref="CDD:197420" gene complement(2249629..2249994) /locus_tag="Alide2_2147" /db_xref="GeneID:10483190" CDS complement(2249629..2249994) /locus_tag="Alide2_2147" /inference="similar to AA sequence:KEGG:Dtpsy_1255" /note="KEGG: dia:Dtpsy_1255 secreted repeat of unknown function" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388035.1" /db_xref="GI:330824732" /db_xref="InterPro:IPR005297" /db_xref="GeneID:10483190" /translation="MTKLGSLLVALALAGGYSMSHAQVSAQDGVLVGPNGMTLYVFDK DMAGSGKSVCNGPCATNWPPLAATAAPSGDGYSLIQRDDGTKQVAYKGKPLYYWSKDS KPGDKTGDGVNNVWHTATP" sig_peptide complement(2249926..2249994) /locus_tag="Alide2_2147" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.672 at residue 23" misc_feature complement(2249797..>2249907) /locus_tag="Alide2_2147" /note="Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640" /db_xref="CDD:112457" misc_feature complement(2249635..2249769) /locus_tag="Alide2_2147" /note="Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640" /db_xref="CDD:112457" gene complement(2250094..2250567) /locus_tag="Alide2_2148" /db_xref="GeneID:10483191" CDS complement(2250094..2250567) /locus_tag="Alide2_2148" /inference="protein motif:TFAM:TIGR00086" /note="KEGG: dia:Dtpsy_1256 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SsrA-binding protein" /codon_start=1 /transl_table=11 /product="SsrA-binding protein" /protein_id="YP_004388036.1" /db_xref="GI:330824733" /db_xref="GO:0003723" /db_xref="InterPro:IPR000037" /db_xref="GeneID:10483191" /translation="MAKKPETSSRIADNKKAAYNYFFEERHEAGMVLHGWEVKALREG KVQLTDGYVVIKDGELFLIGCQINPLKTASTHVNPDATRIKKLLLHKDEIRRLIGKVE QKGYTLVPLNLHWKDGRAKCDIALAKGKAEHDKRDTIKEREGKREVERAMKSRHR" misc_feature complement(2250178..2250528) /locus_tag="Alide2_2148" /note="Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294" /db_xref="CDD:187755" misc_feature complement(order(2250205..2250207,2250289..2250306, 2250391..2250393,2250442..2250444,2250451..2250456, 2250460..2250465,2250469..2250486)) /locus_tag="Alide2_2148" /note="SmpB-tmRNA interface; other site" /db_xref="CDD:187755" gene 2250714..2251154 /locus_tag="Alide2_2149" /db_xref="GeneID:10483192" CDS 2250714..2251154 /locus_tag="Alide2_2149" /inference="protein motif:PFAM:PF03364" /note="PFAM: Streptomyces cyclase/dehydrase; KEGG: dia:Dtpsy_1257 cyclase/dehydrase" /codon_start=1 /transl_table=11 /product="cyclase/dehydrase" /protein_id="YP_004388037.1" /db_xref="GI:330824734" /db_xref="InterPro:IPR005031" /db_xref="GeneID:10483192" /translation="MKTVNKSVLIWYSPEEMFALVTDVAKYPQFLPWCDHATVLERSE HGMKAEVGISLGGLHKSFVTRNTHEEGRRVKMELVEGPFSKLDGDWHFHPVGDGSQRA CKVELQLHYGFDSKALAALVGPVFDRIAATFVDAFIKRAEQVYG" misc_feature 2250723..2251145 /locus_tag="Alide2_2149" /note="Coenzyme Q-binding protein COQ10p and similar proteins; Region: COQ10p_like; cd07813" /db_xref="CDD:176855" misc_feature order(2250723..2250725,2250729..2250731,2250735..2250737, 2250762..2250770,2250774..2250779,2250822..2250824, 2250852..2250854,2250858..2250860,2250864..2250866, 2250870..2250872,2250903..2250905,2250909..2250911, 2250915..2250917,2250933..2250935,2250939..2250941, 2250972..2250977,2250981..2250983,2250987..2250989, 2251026..2251028,2251032..2251034,2251038..2251040, 2251044..2251046,2251077..2251091,2251095..2251103, 2251107..2251115,2251122..2251124) /locus_tag="Alide2_2149" /note="putative coenzyme Q binding site [chemical binding]; other site" /db_xref="CDD:176855" gene 2251164..2251490 /locus_tag="Alide2_2150" /db_xref="GeneID:10483193" CDS 2251164..2251490 /locus_tag="Alide2_2150" /inference="protein motif:PFAM:PF03658" /note="PFAM: Uncharacterised protein family UPF0125; KEGG: ajs:Ajs_2550 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388038.1" /db_xref="GI:330824735" /db_xref="InterPro:IPR005346" /db_xref="GeneID:10483193" /translation="MADMLRVTVAASLQASEVREWQLRLPAGASVADAVLACNIDVQH GRLACGIWGRAVELHERLRDGDRVECCRPLTVDPKLARRQRFASQGARAAGLFAKRRA GSKSGY" misc_feature 2251170..2251448 /locus_tag="Alide2_2150" /note="Uncharacterised protein family (UPF0125); Region: UPF0125; cl01096" /db_xref="CDD:186330" gene complement(2251499..2252002) /locus_tag="Alide2_2151" /db_xref="GeneID:10483194" CDS complement(2251499..2252002) /locus_tag="Alide2_2151" /inference="similar to AA sequence:KEGG:Ajs_2549" /note="KEGG: ajs:Ajs_2549 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388039.1" /db_xref="GI:330824736" /db_xref="GeneID:10483194" /translation="MKPYKLVLLALACTWAIGAFAQWQWVDKDGRKVFSDRPPPQDVP EKNILKQPHTGSPSRPAAAPQATAGSDASSPAQAAPGTGKDKQLEENKAKAEAAEAAK KKAEQERQAKVRADNCARAKLVKAQLAPGRLVSHTNANGERSFMDDATRAAELSRADA VIASDCQ" sig_peptide complement(2251937..2252002) /locus_tag="Alide2_2151" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 22" gene 2252096..2253571 /locus_tag="Alide2_2152" /db_xref="GeneID:10483195" CDS 2252096..2253571 /locus_tag="Alide2_2152" /EC_number="1.1.1.205" /inference="protein motif:TFAM:TIGR01302" /note="SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: dia:Dtpsy_1260 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core" /codon_start=1 /transl_table=11 /product="inosine-5'-monophosphate dehydrogenase" /protein_id="YP_004388040.1" /db_xref="GI:330824737" /db_xref="GO:0003938" /db_xref="InterPro:IPR000644" /db_xref="InterPro:IPR001093" /db_xref="InterPro:IPR005990" /db_xref="GeneID:10483195" /translation="MRLLGKALTFDDVLLVPAYSQVLPKDTSLSTRFTRNIQLNLPLV SAAMDTVTEARLAIAIAQEGGIGVIHKNMTAQQQAAEVSRVKRHESGVVHDPVVITPE HTVLQVLELSENLGISGFPVCDGGKVVGIVTSRDVRFETRYDVKVSQIMTPREKLITV NEKDHTSPAQAKALLNKHKLERLLVVNDGFELKGLITVKDINKQTTFPNAARDSEGRL RVAAAVGVGEGTEERVAALVKAGVDAIVVDTAHGHSKGVIERVRWVKQNYPQVDVIGG NIATGAAALALVEAGADAVKVGIGPGSICTTRIVAGVGVPQIMAIDNVATALKGTGVP LIADGGIRFSGDIAKAIAAGASTIMMGGMFAGTEEAPGEVILYQGRSYKSYRGMGSIG AMQQGSADRYFQEATTGNPNADKLVPEGIEGRVPYKGSMVSIVFQMAGGVRAAMGYCG CATIAEMNDKAEFVEITAAGIRESHVHDVQITKEAPNYRAD" misc_feature 2252096..2253568 /locus_tag="Alide2_2152" /note="inosine 5'-monophosphate dehydrogenase; Reviewed; Region: PRK05567" /db_xref="CDD:180134" misc_feature 2252114..>2252353 /locus_tag="Alide2_2152" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature 2252372..2252704 /locus_tag="Alide2_2152" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key...; Region: CBS_pair_IMPDH; cd04601" /db_xref="CDD:73101" misc_feature <2252738..2253493 /locus_tag="Alide2_2152" /note="IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the...; Region: IMPDH; cd00381" /db_xref="CDD:73364" misc_feature order(2253002..2253010,2253107..2253109,2253113..2253115, 2253176..2253181,2253248..2253250,2253254..2253262, 2253350..2253355) /locus_tag="Alide2_2152" /note="active site" /db_xref="CDD:73364" gene 2253645..2255261 /locus_tag="Alide2_2153" /db_xref="GeneID:10483196" CDS 2253645..2255261 /locus_tag="Alide2_2153" /EC_number="6.3.5.2" /inference="protein motif:TFAM:TIGR00884" /note="TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; KEGG: dac:Daci_3013 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; NAD/GMP synthase" /codon_start=1 /transl_table=11 /product="GMP synthase, large subunit" /protein_id="YP_004388041.1" /db_xref="GI:330824738" /db_xref="GO:0003922" /db_xref="GO:0005524" /db_xref="InterPro:IPR000991" /db_xref="InterPro:IPR001674" /db_xref="InterPro:IPR004739" /db_xref="InterPro:IPR022310" /db_xref="GeneID:10483196" /translation="MQHDKILILDFGSQVTQLIARRVREAHVYCEVHPCDVSSEWVRS FAADGRLKGVILSGSHASVYEVDDKAPEAVFELGVPVLGICYGMQTMANQLGGKVEGS HTREFGYAEVRAHGHTELLKGIEDFATPEGYGMLKVWMSHGDKVTGLPPGFKLMASTP SCPIAGMADEARRFYAVQFHPEVTHTVQGRALLERFVLGICAARPDWVMKDHIAEAVE AIRAQVGDEEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDMVMDMF EGKLHAKVIRVDASELFLSKLAGVSEPEQKRKIIGGLFVDVFKAEAAKLKAAGGGHKG ATFLAQGTIYPDVIESGGAKSKKAVTIKSHHNVGGLPEQLGLKLLEPLRDLFKDEVRE LGVALGLPREMVYRHPFPGPGLGVRILGEVKKEYADLLRRADAIFIAELRACIDPASG KSWYDLTSQAFTVFLPVKSVGVMGDGRTYDYVVALRAVQTSDFMTADWAELPYELLKK VSGRIINEVRGINRVTYDVSSKPPATIEWE" misc_feature 2253645..2255258 /locus_tag="Alide2_2153" /note="GMP synthase; Reviewed; Region: guaA; PRK00074" /db_xref="CDD:178842" misc_feature 2253660..2254235 /locus_tag="Alide2_2153" /note="Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase; Region: GATase1_GMP_Synthase; cd01742" /db_xref="CDD:153213" misc_feature order(2253681..2253686,2253816..2253824,2253897..2253902, 2254065..2254067,2254182..2254184) /locus_tag="Alide2_2153" /note="AMP/PPi binding site [chemical binding]; other site" /db_xref="CDD:153213" misc_feature order(2253819..2253821,2253900..2253902) /locus_tag="Alide2_2153" /note="candidate oxyanion hole; other site" /db_xref="CDD:153213" misc_feature order(2253897..2253899,2254182..2254184,2254188..2254190) /locus_tag="Alide2_2153" /note="catalytic triad [active]" /db_xref="CDD:153213" misc_feature order(2253909..2253911,2254068..2254070,2254176..2254178) /locus_tag="Alide2_2153" /note="potential glutamine specificity residues [chemical binding]; other site" /db_xref="CDD:153213" misc_feature 2254329..2255255 /locus_tag="Alide2_2153" /note="The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched...; Region: GMP_synthase_C; cd01997" /db_xref="CDD:30184" misc_feature order(2254329..2254400,2254404..2254436,2254440..2254472, 2254503..2254616,2254653..2254700,2254728..2254757, 2254770..2254844,2254860..2254904) /locus_tag="Alide2_2153" /note="ATP Binding subdomain [chemical binding]; other site" /db_xref="CDD:30184" misc_feature order(2254338..2254346,2254350..2254361,2254413..2254415, 2254419..2254421,2254803..2254805) /locus_tag="Alide2_2153" /note="Ligand Binding sites [chemical binding]; other site" /db_xref="CDD:30184" misc_feature order(2254929..2254967,2255013..2255042,2255049..2255081, 2255091..2255138,2255157..2255183,2255187..2255255) /locus_tag="Alide2_2153" /note="Dimerization subdomain; other site" /db_xref="CDD:30184" gene 2255650..2257176 /locus_tag="Alide2_2154" /db_xref="GeneID:10483197" CDS 2255650..2257176 /locus_tag="Alide2_2154" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004388042.1" /db_xref="GI:330824739" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10483197" /translation="MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLRVGEA EPHYAKRVSPSKLDPFALKLAGWLKTEAGRSRKQRRTVKQMYVDLQALGYGGSYNRVA AFARLWHEQRLVAQQTTGRGTFVPLAFGPGEAFQFDWSEDWAVLAGVRTKLQVAHFKL SHSRAFYLRAYPLQTHEMLFDAHNHAFAVLGGVPRRGIYDNMRTAVDRVRRGKERDVN ARFAAMVSHFLFEAEFCNPASGWEKGQVEKNVRDARHRLWQVVPPFPSLPDLNAWLEE RCVALWHEIEHGKLPGTVADIWTEEKNDLMPMPRPFDGFVEHTKRVSPTCLVHFERNR YSVPAPYANRPVSLRVYADRLVVAAEGQIVCEHQRLIERNHHGAGQTVYDWRHYLAVL QRKPGALRNGAPFLELPAAFKRLQAALLKQPGGDREMVEVLALVLHHDEQAVLAAVEL ALESGAASKTHILNVLHRLLDGKPAPAPVTSPQALKLSVEPQANVLRYDQLREVRYAS " misc_feature 2255671..2256516 /locus_tag="Alide2_2154" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584" /db_xref="CDD:34222" misc_feature 2256031..2256420 /locus_tag="Alide2_2154" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 2257166..2257969 /locus_tag="Alide2_2155" /db_xref="GeneID:10483198" CDS 2257166..2257969 /locus_tag="Alide2_2155" /inference="protein motif:PFAM:PF01695" /note="KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="IstB domain-containing protein ATP-binding protein" /protein_id="YP_004388043.1" /db_xref="GI:330824740" /db_xref="GO:0005524" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10483198" /translation="MRHDPAIASIVIMLRELKMHGMAQAVAELAEQGAPAFDAAQPIL SQLLKAETAEREVRSVAYQLKVARFPAYRDLAGFDFSHSEVNEALVRQLHRCEFLENA NNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEEEKAQGKPGQIAH RLAYADLVILDELGYLPFSTSGGALLFHLLSKLYERTSVVITTNLSFSEWANVFGDAK MTTALLDRLTHHCHILETGNDSYRFKNSSAQQPPQTTKKEKATKNLSTT" misc_feature 2257193..2257897 /locus_tag="Alide2_2155" /note="transposase/IS protein; Provisional; Region: PRK09183" /db_xref="CDD:181681" misc_feature 2257421..2257864 /locus_tag="Alide2_2155" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 2257490..2257513 /locus_tag="Alide2_2155" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(2257493..2257516,2257676..2257678,2257775..2257777) /locus_tag="Alide2_2155" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 2257664..2257681 /locus_tag="Alide2_2155" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 2257841..2257843 /locus_tag="Alide2_2155" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(2258020..2258808) /locus_tag="Alide2_2156" /db_xref="GeneID:10483199" CDS complement(2258020..2258808) /locus_tag="Alide2_2156" /inference="protein motif:PFAM:PF00589" /note="PFAM: Integrase, catalytic core, phage; KEGG: bpt:Bpet1499 putative integrase/recombinase" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004388044.1" /db_xref="GI:330824741" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10483199" /translation="MTALWNGFHSALAPHIEQYLRAKRAMGCKFACEDRQLRLLDRFL DDRGVECIEAIDGECLQAFLDSRHRTNPRSYNNLLGDVRRLFEWMVGQQVLVGSPLTA RAQPQTARRLPFLFSDDTIRRLLISARALPDNSRAQLRGASYEMILALLAGLGLRVGE VARLQWGDVDLVREVLEIRNTKFGKDRLVPFGPKLAARLRGYQAQREQRGYACAGAHY LFSWNGRTPISTNSIRNTFRDDLLPQLALVTPPGVFGLLISTQS" misc_feature complement(<2258137..2258775) /locus_tag="Alide2_2156" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" gene complement(2258805..2260064) /locus_tag="Alide2_2157" /db_xref="GeneID:10483200" CDS complement(2258805..2260064) /locus_tag="Alide2_2157" /inference="protein motif:PFAM:PF00589" /note="PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: bpt:Bpet1498 putative integrase/recombinase" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004388045.1" /db_xref="GI:330824742" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="InterPro:IPR004107" /db_xref="GeneID:10483200" /translation="MLERHFRSLKAIDRIKAQWLGPQIERYAQFLDELHTSNSTVRQH VRALGHFNDFVIGRGATCLDDLPDHVDAFVEHWQAGHGRWCKSAQDRAAVVAQSRVPV ERMLSLAVPGYTRPSNRPAMPFSTSVPGFFPFLLKEKGLRQTSIHNYTFTLRPFDSYL AQAGISLDKLTPACITEFINDRAKTLHKSGMLNTAEALRVFLRYLHREGIIANDLVRS VPRGRVYRQASIPRAIGWADVERLLASIDRRSDLGKRDYAILTLLTSYGLRAREIVAL CLDDLDWAHGQIGIPMRKGGHSTRYPLSAAVGEAIIAYLHVRRTDIDDRRIFLTVRSP YTPMNHWTVSSMVAGHLRSIGIQVARAGSHTLRHSCVQHLVEADLPFKVIGDYVGHRH PASTLVYGKVAVHKLREMVIGHGEDVL" misc_feature complement(2258823..2259674) /locus_tag="Alide2_2157" /note="tyrosine recombinase XerD; Region: recomb_XerD; TIGR02225" /db_xref="CDD:162772" misc_feature complement(2259438..2259674) /locus_tag="Alide2_2157" /note="Phage integrase, N-terminal SAM-like domain; Region: Phage_integr_N; cl12235" /db_xref="CDD:187201" misc_feature complement(2258832..2259377) /locus_tag="Alide2_2157" /note="pAE1 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal domain. This CD includes various bacterial integrases, including the predicted integrase of the deletion-prone region of plasmid pAE1 of Alcaligenes...; Region: INT_pAE1; cd01188" /db_xref="CDD:29509" misc_feature complement(order(2258868..2258870,2258895..2258897, 2258964..2258966,2258973..2258975,2259183..2259185, 2259258..2259260)) /locus_tag="Alide2_2157" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29509" gene 2260204..2260365 /locus_tag="Alide2_2158" /pseudo /db_xref="GeneID:10483201" gene 2260648..2260998 /locus_tag="Alide2_2159" /db_xref="GeneID:10483202" CDS 2260648..2260998 /locus_tag="Alide2_2159" /inference="similar to AA sequence:KEGG:Bpet2173" /note="KEGG: bpt:Bpet2173 putative transposon" /codon_start=1 /transl_table=11 /product="putative transposon protein" /protein_id="YP_004388046.1" /db_xref="GI:330824743" /db_xref="GeneID:10483202" /translation="MNNALITDEQRIVLLANGRESLDNPDFDPAPVIKLFTPDAGATW LLTEIDPDDHDHAFGLCDLGLGMPEIGWVSLGELATVRGGLGLPIERDLSFRAEKRLS AYARDARLAGRVDV" misc_feature 2260660..2260989 /locus_tag="Alide2_2159" /note="Protein of unknown function (DUF2958); Region: DUF2958; pfam11171" /db_xref="CDD:151613" gene 2261747..2262577 /locus_tag="Alide2_2160" /db_xref="GeneID:10483203" CDS 2261747..2262577 /locus_tag="Alide2_2160" /inference="protein motif:PFAM:PF06067" /note="PFAM: Protein of unknown function DUF932; KEGG: sml:Smlt1327 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388047.1" /db_xref="GI:330824744" /db_xref="InterPro:IPR009276" /db_xref="GeneID:10483203" /translation="MQIASRFASRSPSLRSDYPLSDDQIRRVAPSIFADAPHESRSER YSYIPTAAVLTELRKEGFQPFMVTQTRVRDEGKREHTKHMLRLRHASQINGEEANEIV LLNSHDGTSSYQMLAGMFRFVCSNGLVCGDTVADVRVPHKGDVSGHVIEGAYEVLRGF NRVKESRDAMRAITLDESEAEVFARSALALKYDPTDNKPAPITESQILMPRRFDDRRP DLWSVFNRTQENLTKGGLHGRSANGRRQQTRPVQGIDSDVRLNRALWMLADGLRQLKA " misc_feature 2261855..2262541 /locus_tag="Alide2_2160" /note="Domain of unknown function (DUF932); Region: DUF932; cl12129" /db_xref="CDD:164334" gene 2262658..2264724 /locus_tag="Alide2_2161" /db_xref="GeneID:10483204" CDS 2262658..2264724 /locus_tag="Alide2_2161" /inference="protein motif:PFAM:PF02195" /note="KEGG: dia:Dtpsy_3534 ParB domain protein nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease" /codon_start=1 /transl_table=11 /product="ParB domain-containing protein nuclease" /protein_id="YP_004388048.1" /db_xref="GI:330824745" /db_xref="GO:0003677" /db_xref="InterPro:IPR003115" /db_xref="GeneID:10483204" /translation="MNAITQTEARAIQAPELEAADPTKNLILVPLSRLVLRPTGRNVR KTPRMSISELAASIQRVGLLQNLIVIASADGEHYEVVAGGRRLAALKLLAKKHRIGKE WEVPCLLVADGTARTASLTENVQREAMHPADQFEAFAALVAEGRPIEDIAADFSVTPL VVQRRLKLANVSPRLMADYRADAVSLDQLMALAITDDHTMQEAAFYHAPQWQRHPSHL RERLTEREVDAYRHPLVRFVGLDTYEAAGGGIRRDLFAEDDAGVYLTDAALLERLAQD KLAGIAATVRAEGWAWVDATPGVTHADLHAFQPAPRERREPNKREAARIEKLQTKMHE LAEAVDAAMDADDEDKADALQEEGETLGEQLQALEDGLQDYGANVKAAAGAIVTIDRN GEAVIHRGLLREAEAKALRTLERLRQGFSSESEAENDDEGEDGDDERQPKIAAMSDRL AQRLSAHRTAALQIEVARHPQAALAAVVHSMVQTVLQESRYGFKRDSLPLGVSLKVQD RLEGMAPDWPHSTAAVALRELQQVAGEALPEDSAELFAALLAKPQDELVRLLAVCVAS TVDVVTPRATPRQPGVELAQAVGLDMTAWWQPTAEGYFKHVPKAAVLQAVGEYAPDQV SRLAKLKKADIASEAERLADGTGWMPAIFKAEGPQDAAQEAGPEQDAPEDAEAMADEP TEALAA" misc_feature 2262742..>2262900 /locus_tag="Alide2_2161" /note="ParB-like nuclease domain; Region: ParBc; cl02129" /db_xref="CDD:154762" misc_feature 2262775..>2263176 /locus_tag="Alide2_2161" /note="PRTRC system ParB family protein; Region: PRTRC_parB; TIGR03734" /db_xref="CDD:163446" gene 2264787..2264996 /locus_tag="Alide2_2162" /db_xref="GeneID:10483205" CDS 2264787..2264996 /locus_tag="Alide2_2162" /inference="similar to AA sequence:KEGG:Daci_2732" /note="KEGG: dac:Daci_2732 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388049.1" /db_xref="GI:330824746" /db_xref="GeneID:10483205" /translation="MTRTTTSRPRMAASYAPGTVRARRWHGDGDVRGYRPPSGWTARA DLTDIHPITGHALPRAVWWIIETKE" gene complement(2265201..2265428) /locus_tag="Alide2_2163" /db_xref="GeneID:10483206" CDS complement(2265201..2265428) /locus_tag="Alide2_2163" /inference="similar to AA sequence:KEGG:Rfer_0855" /note="KEGG: rfr:Rfer_0855 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388050.1" /db_xref="GI:330824747" /db_xref="GeneID:10483206" /translation="MIAGTPTLESVLTCPHCGHVRRETMPTDACQFFYECERCKTLLL PKAGDCCVFCSYGSVKCPPMQMQQSCSSCST" gene complement(2265425..2265703) /locus_tag="Alide2_2164" /db_xref="GeneID:10483207" CDS complement(2265425..2265703) /locus_tag="Alide2_2164" /inference="protein motif:TFAM:TIGR02052" /note="KEGG: psa:PST_3433 periplasmic transport protein; MerP; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein" /codon_start=1 /transl_table=11 /product="mercuric transport protein periplasmic component" /protein_id="YP_004388051.1" /db_xref="GI:330824748" /db_xref="GO:0015097" /db_xref="GO:0045340" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR011795" /db_xref="GeneID:10483207" /translation="MRKSVVSLLVALSPFAALAATPQTATLNVQNMTCELCPVTVKKS LEKVPGVSQVRIDFAKKTATVTFDAEQAQVSTLVKATTDAGYPTTVHK" sig_peptide complement(2265644..2265703) /locus_tag="Alide2_2164" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 at residue 20" misc_feature complement(2265437..2265622) /locus_tag="Alide2_2164" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature complement(order(2265593..2265595,2265602..2265610)) /locus_tag="Alide2_2164" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" gene complement(2265714..2266061) /locus_tag="Alide2_2165" /db_xref="GeneID:10483208" CDS complement(2265714..2266061) /locus_tag="Alide2_2165" /inference="protein motif:PFAM:PF02411" /note="PFAM: Mercuric transport protein MerT; KEGG: psa:PST_3432 mercuric transport protein" /codon_start=1 /transl_table=11 /product="Mercuric transport protein MerT" /protein_id="YP_004388052.1" /db_xref="GI:330824749" /db_xref="GO:0015097" /db_xref="InterPro:IPR003457" /db_xref="GeneID:10483208" /translation="MSTFNFKNSLVAGTLAAIGASVCCVVPLVLLMMGIGGAWIASLT ALEPLRPWFIAATFLFVGLAFQRLYFQQPACEPGAACAQSSVLKRQRLIFWAVALVLL ALLSVPWLAPLFF" sig_peptide complement(2265924..2266061) /locus_tag="Alide2_2165" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.418 at residue 46" misc_feature complement(2265780..2266037) /locus_tag="Alide2_2165" /note="MerT mercuric transport protein; Region: MerT; cl03578" /db_xref="CDD:186578" gene 2266135..2266530 /locus_tag="Alide2_2166" /db_xref="GeneID:10483209" CDS 2266135..2266530 /locus_tag="Alide2_2166" /inference="protein motif:TFAM:TIGR02051" /note="TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: rme:Rmet_5990 mercury resistance regulatory protein MerR; SMART: HTH transcriptional regulator, MerR" /codon_start=1 /transl_table=11 /product="MerR family transcriptional regulator" /protein_id="YP_004388053.1" /db_xref="GI:330824750" /db_xref="GO:0003677" /db_xref="GO:0045340" /db_xref="InterPro:IPR000551" /db_xref="InterPro:IPR011794" /db_xref="InterPro:IPR015358" /db_xref="GeneID:10483209" /translation="MSALTIGGLADEAGVNVETIRYYQRRGLMPEPDKPAHGYRRYDA TTVKRVRFIKRAQALGFTLEEIGGLLELDEAHACAETRELASHKLEAIETKLADLAAM RRALMTLLRQCDAGAMKGNCPIIHALGAD" misc_feature 2266144..2266518 /locus_tag="Alide2_2166" /note="Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator; Region: HTH_MerR1; cd04783" /db_xref="CDD:133410" misc_feature 2266147..2266518 /locus_tag="Alide2_2166" /note="Hg(II)-responsive transcriptional regulator; Region: MerR; TIGR02051" /db_xref="CDD:131106" misc_feature order(2266147..2266155,2266195..2266197,2266246..2266254) /locus_tag="Alide2_2166" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133410" misc_feature order(2266288..2266290,2266297..2266299,2266309..2266314, 2266339..2266341,2266366..2266371,2266378..2266380, 2266387..2266389,2266399..2266401,2266417..2266419, 2266429..2266431,2266438..2266443,2266462..2266464, 2266477..2266482,2266498..2266500,2266504..2266506) /locus_tag="Alide2_2166" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133410" misc_feature order(2266366..2266368,2266471..2266473,2266498..2266500) /locus_tag="Alide2_2166" /note="mercury binding site [ion binding]; other site" /db_xref="CDD:133410" gene complement(2266792..2267841) /locus_tag="Alide2_2167" /db_xref="GeneID:10483210" CDS complement(2266792..2267841) /locus_tag="Alide2_2167" /inference="protein motif:PFAM:PF00892" /note="PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2217 protein of unknown function DUF6 transmembrane" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388054.1" /db_xref="GI:330824751" /db_xref="InterPro:IPR000620" /db_xref="GeneID:10483210" /translation="MTGRSSILAALAAALLFGASTPFAKQMVGDVSPIMLAGLLYLGS GIGLWTVRLIRDRGFAAPSLPAWEWPWLLGAIASGGVLGPLLLMIGLTHTTAADASLM LNMEAVLTAVLAWVVFHENADRRIVLGMAFIVAGGLLLAWPQHDGMGHSSTLGSLAVV GACLCWAVDNNLTRKVSASDAVFIAGTKGLVAGVTNLALALALGATLPAWPRVAQAMS VGLAGYGVSLVLFVLALRGLGSARAGAYFSTAPFIGAAIAIVSLGEPTSGVFWLAAAL MGIGVWLHLTERHEHEHTHKPMAHAHRHVHDQHHRHTHDFPWDGVEPHAHPHRHEPLL HSHPHFPDVHHQHSH" sig_peptide complement(2267767..2267841) /locus_tag="Alide2_2167" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 25" misc_feature complement(2266996..2267793) /locus_tag="Alide2_2167" /note="Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:31041" misc_feature complement(2267416..2267793) /locus_tag="Alide2_2167" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene 2267945..2268709 /locus_tag="Alide2_2168" /db_xref="GeneID:10483211" CDS 2267945..2268709 /locus_tag="Alide2_2168" /inference="similar to AA sequence:KEGG:PA14_31180" /note="KEGG: pau:PA14_31180 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388055.1" /db_xref="GI:330824752" /db_xref="GeneID:10483211" /translation="MACRRKAPPGYWAAPRASFRVTAIRASIPHAYAPAALRATLASG GSAQGPSPPRRLGAPAIPPNRRRRIGQGQRPAVWAVLGGCAVACCGGLCECVPSPTLW QFVAYVSRMTVNRYATRPSLGLHTALQAWLPAWEGTCSCWSLGNGLAESGGVPLKPSC GDAELAMSPFGVWVRPKASLCCCESWRGHGCASDFMAATVRRKQFPLRCAHSSRAKFF SPPGAPLRCAHKRCSQPVPRRSDHNKDAMGANLVQP" gene 2268721..2269035 /locus_tag="Alide2_2169" /db_xref="GeneID:10483212" CDS 2268721..2269035 /locus_tag="Alide2_2169" /inference="protein motif:PFAM:PF05284" /note="PFAM: Protein of unknown function DUF736; KEGG: dac:Daci_0462 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388056.1" /db_xref="GI:330824753" /db_xref="InterPro:IPR007948" /db_xref="GeneID:10483212" /translation="MATIGTFTADKDGFTGTLRTLTLNVKAKLVPNDKGDNEHAPDFR VQAAGYDIGAAWRKVSKAERLYISVTLDDPSFPATVYARLIEEEGGTHNLIWSRSKPQ VA" misc_feature 2268721..2269026 /locus_tag="Alide2_2169" /note="Protein of unknown function (DUF736); Region: DUF736; cl02303" /db_xref="CDD:154848" gene complement(2269191..2269484) /locus_tag="Alide2_2170" /db_xref="GeneID:10483213" CDS complement(2269191..2269484) /locus_tag="Alide2_2170" /inference="protein motif:PFAM:PF01381" /note="KEGG: bpr:GBP346_A0950 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="YP_004388057.1" /db_xref="GI:330824754" /db_xref="GO:0043565" /db_xref="InterPro:IPR001387" /db_xref="GeneID:10483213" /translation="MAAKHTLSEALKTIRKARGLSQEAFSDVSSRTYMSSLERDLKSP TLNKLAELCEVMEVHPLTLLTLAYAGDDAQRAEQLLAQVRQEMDAVLKKDDAR" misc_feature complement(2269311..2269460) /locus_tag="Alide2_2170" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene 2269710..2270057 /locus_tag="Alide2_2171" /db_xref="GeneID:10483214" CDS 2269710..2270057 /locus_tag="Alide2_2171" /inference="similar to AA sequence:KEGG:Rmet_1482" /note="KEGG: rme:Rmet_1482 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388058.1" /db_xref="GI:330824755" /db_xref="GeneID:10483214" /translation="MNPLITEDERRQLLAHGQARSAGQAIDPLPVVRLFTPDAHATWL LAALDPADGDTAQGLIDLGISMPELGTVKLSDLAAIVGPRQQPVMRDRYFQAVRPLSE YLRLAQENGSVVD" misc_feature 2269719..2270054 /locus_tag="Alide2_2171" /note="Protein of unknown function (DUF2958); Region: DUF2958; pfam11171" /db_xref="CDD:151613" gene 2270314..2270637 /locus_tag="Alide2_2172" /db_xref="GeneID:10483215" CDS 2270314..2270637 /locus_tag="Alide2_2172" /inference="protein motif:PFAM:PF01527" /note="PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein" /codon_start=1 /transl_table=11 /product="transposase IS3/IS911 family protein" /protein_id="YP_004388059.1" /db_xref="GI:330824756" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002514" /db_xref="GeneID:10483215" /translation="MNKSPKFSPEVRERAVRMVQEHRADYPSLWAAIESIAPKIGCVP QTLNDWVKKAEVDSGQRPGTTTADAQRIKELEREVKELRRANDILKTASAFFAQAELD RRLKS" misc_feature 2270314..2270523 /locus_tag="Alide2_2172" /note="Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" /db_xref="CDD:186341" gene 2270634..2271548 /locus_tag="Alide2_2173" /db_xref="GeneID:10483216" CDS 2270634..2271548 /locus_tag="Alide2_2173" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004388060.1" /db_xref="GI:330824757" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10483216" /translation="MKNYIDRHRDDYGVEPICRVLQMAPSCYWRHAARQRNPQLRSQR VQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGIAVARCTVERLMRAMGLQGARRG KTVRTTTPDTSAPCPLDHVNRQFKASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQ PSVGSRGDSYDNALAETINGLYKAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTP IGGIPPAEAEANYWRQLAVSDTSTEVST" misc_feature 2270694..2271530 /locus_tag="Alide2_2173" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:177368" misc_feature 2271009..2271365 /locus_tag="Alide2_2173" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 2271720..2272472 /locus_tag="Alide2_2174" /db_xref="GeneID:10483217" CDS 2271720..2272472 /locus_tag="Alide2_2174" /inference="protein motif:PFAM:PF10074" /note="PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388061.1" /db_xref="GI:330824758" /db_xref="InterPro:IPR018754" /db_xref="GeneID:10483217" /translation="MGNPHHLAHWYPTAAYLYILGLDALALAWEYLRRHPDYRLDWRR RARRPDAAQRWGLRLLEDPALDARDAQPAWQPGHAAVVQLYPDADPPVDAELFSFWRI PGHKQLLHDGKGLVLIARSAGHWQRFVLASGLEDGMAVAYAYHGRGGVMHAPDTPAPM ARSRPPPAALLELHTLQALDATLAGASLREVGEGLFGVDAVADWYSDGGLRSKVRRLV RRGDALMRSGYRRLAQLAPLEKGRFESNAKRP" misc_feature 2272098..2272421 /locus_tag="Alide2_2174" /note="Uncharacterized conserved protein (DUF2285); Region: DUF2285; cl02246" /db_xref="CDD:154817" gene 2272556..2272837 /locus_tag="Alide2_2175" /db_xref="GeneID:10483218" CDS 2272556..2272837 /locus_tag="Alide2_2175" /inference="similar to AA sequence:KEGG:Ajs_2652" /note="KEGG: ajs:Ajs_2652 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388062.1" /db_xref="GI:330824759" /db_xref="GeneID:10483218" /translation="MRPAPLRPAAAVSTAAAQPQRYLTNDEAADYLRLSPRTLEKQRV IGGGPRFRKFGRRVMYAVADLDAWATDRSFETTSDPEYAEHHSADSRAR" gene 2272852..2273697 /locus_tag="Alide2_2176" /db_xref="GeneID:10483219" CDS 2272852..2273697 /locus_tag="Alide2_2176" /inference="protein motif:PFAM:PF10134" /note="PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein" /codon_start=1 /transl_table=11 /product="Replication initiator protein A" /protein_id="YP_004388063.1" /db_xref="GI:330824760" /db_xref="InterPro:IPR018777" /db_xref="GeneID:10483219" /translation="MASAVSKPSQEREQLDLFRALPGDMAPRDSQDLMAYPFFSLGKS KRVKPIDFRAGNVAIRVEGTAEHGIATIWDADVLIWAASQIVEAKDAGLRPSRLMRAT PYEILRFIGRGKSLRDYQRLKAALDRLQSTTVATSIRETTGRRLHRFSWINEWKELAD AKGTPLGLELILPDWFYAGVLDAALVLTIDPAYFRLTGGIERWLYRLVRKHGGRQQHG WQFDFRHLYRKSGSATRFSDFAYDLRVLVARQSLPGYVLGIERMPDNGMELLTFRPVP QTARE" misc_feature 2272933..2273622 /locus_tag="Alide2_2176" /note="Replication initiator protein A; Region: RPA; cl02339" /db_xref="CDD:154863" gene 2273951..2274589 /locus_tag="Alide2_2177" /db_xref="GeneID:10483220" CDS 2273951..2274589 /locus_tag="Alide2_2177" /inference="protein motif:PFAM:PF01656" /note="PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase" /codon_start=1 /transl_table=11 /product="Cobyrinic acid ac-diamide synthase" /protein_id="YP_004388064.1" /db_xref="GI:330824761" /db_xref="InterPro:IPR002586" /db_xref="GeneID:10483220" /translation="MIVALLNQKGGVGKTTLATHIAGELAMRGQHVVLLDADPQGSSL DWTQRRSQLSLPRLFSAAGLARETLHQEAPELARRADHVVIDGPPRIAALARSALLAA ERVLIPVQPSPYDLWASAEMVALIREAQVFRPALRAAFVINRRVSTTVIGREARQALA HQPLPALRAEVHQRIVFADSVATGRLARETAPDSAAAREITALVDELLRWPT" misc_feature 2273951..2274577 /locus_tag="Alide2_2177" /note="ParA-like protein; Provisional; Region: PHA02518" /db_xref="CDD:134018" misc_feature 2273954..2274379 /locus_tag="Alide2_2177" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature 2273975..2273995 /locus_tag="Alide2_2177" /note="P-loop; other site" /db_xref="CDD:73302" misc_feature order(2273993..2273995,2274206..2274208) /locus_tag="Alide2_2177" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene 2274586..2274870 /locus_tag="Alide2_2178" /db_xref="GeneID:10483221" CDS 2274586..2274870 /locus_tag="Alide2_2178" /inference="similar to AA sequence:KEGG:Bpet2187" /note="KEGG: bpt:Bpet2187 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388065.1" /db_xref="GI:330824762" /db_xref="GeneID:10483221" /translation="MTEKPLPNSKRTAKRVGIGARPPVNPHAEAWIRQGDADALGKGD LYTARLTLDITPAMRARIKVSAFTQGVTVADLLRGLLEREFPEHRRENTP" gene 2274867..2275412 /locus_tag="Alide2_2179" /db_xref="GeneID:10483222" CDS 2274867..2275412 /locus_tag="Alide2_2179" /inference="similar to AA sequence:KEGG:Rmet_1257" /note="KEGG: rme:Rmet_1257 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388066.1" /db_xref="GI:330824763" /db_xref="GeneID:10483222" /translation="MTASASLAPAPVAFAATAALAAPSAQPASAPLTRVALAYIEPRF NLYLRFGEPARTHQLDRWRRCAVFLPGAMFCRIRWQANDYGTIRWQLMVMQTCTPLDA AQRIPGVQPGARLLLHAEGENQVRTVLERIDAIEVLRIAPAAVSPAYWRTLANRLAAR LPLPEYTAERHAAWLAGRALP" sig_peptide 2274867..2274932 /locus_tag="Alide2_2179" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 at residue 22" misc_feature 2274966..2275406 /locus_tag="Alide2_2179" /note="Protein of unknown function (DUF2840); Region: DUF2840; pfam11000" /db_xref="CDD:192691" gene 2275409..2275996 /locus_tag="Alide2_2180" /db_xref="GeneID:10483223" CDS 2275409..2275996 /locus_tag="Alide2_2180" /inference="protein motif:PFAM:PF10502" /note="PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase" /codon_start=1 /transl_table=11 /product="peptidase S26" /protein_id="YP_004388067.1" /db_xref="GI:330824764" /db_xref="InterPro:IPR019533" /db_xref="GeneID:10483223" /translation="MTAVSNSGTAPRSRSRLRARLVLASLSACGLAALAWASFVQPLP RLIYNPSVSVAVGWYRVETLGRGTSSPPRPLSVGSIVLTTLPPDASALAAQRGYLPTR VPLLKRVGAVAPQEVCITGRIVRIDGVPSAAALPADRWGRPLPSWQQCRRLEPGELFL LSVTNSASFDSRYFGPVSASSVIGVARPVWLESRP" sig_peptide 2275409..2275522 /locus_tag="Alide2_2180" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.500 at residue 38" misc_feature 2275544..2275981 /locus_tag="Alide2_2180" /note="Peptidase S26; Region: Peptidase_S26; pfam10502" /db_xref="CDD:151062" misc_feature <2275577..2275975 /locus_tag="Alide2_2180" /note="The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88)...; Region: Peptidase_S24_S26; cl10465" /db_xref="CDD:186999" gene 2276445..2278442 /locus_tag="Alide2_2181" /db_xref="GeneID:10483224" CDS 2276445..2278442 /locus_tag="Alide2_2181" /inference="similar to AA sequence:KEGG:PA14_31070" /note="KEGG: pau:PA14_31070 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388068.1" /db_xref="GI:330824765" /db_xref="GeneID:10483224" /translation="MTDRRDDDFRIRPSAPKNRGKGQGQSFVSKVLKQTGKASGGKSS MRHSTASGGQGQRAGQRPGSRLGRGHTAARFAGAKLTPMSRRVTIKTLLVNQQRVSPQ SLAKHLRYIERDGVGRDGEPGQAYGPQTDAVDLDAFKERCADDRHHFRFILSPEDGAE LEDLRTYTRHLMGRMEADLGTGLDWVAVNHWNTDNPHTHIVVRGRDDTGKDLIIAGDY IADGFRHCAAELATEWLGPRTELEIQQALQREVEQERWTSLDRILQREVGEGGRVQIE RFNEPRLQRQRLLLIDRLQHLQRLGLADEVQPGTWAVHADAEKTLRALGERGDIIRTM QRAMRGQPRELAVFEPSDDGRTILGRVAAKGLADELRDRGYLVIDGVDGKAHYVALNA RDELANYPAGAVVEVKGSADVRAADRNIAALASGGLYRADHHLAIAQGQAVPGRDPQE VVATHVRRLEALRRAGIVERVAEGLWKVPGDLPEQGRRYDAQRLGGVAVELKSHLPIE RQARVIGATWLDQQLIGGGRGLGDLGFGGEAKEALQKRADFLAEQGLAEKRGQRVILA RNLLGTLRSREVAQAGKDIAADTGLEHRPVADGQRVAGIYRRSVMLASGPYAMIDDSL SFCLVPWRPVIEQRLGQQIAATVRGGGVSWEIGRRPGLSRG" misc_feature 2276676..2277614 /locus_tag="Alide2_2181" /note="Relaxase/Mobilisation nuclease domain; Region: Relaxase; cl01584" /db_xref="CDD:174650" misc_feature 2277345..2278436 /locus_tag="Alide2_2181" /note="Protein of unknown function (DUF3363); Region: DUF3363; pfam11843" /db_xref="CDD:152279" gene complement(2278637..2280316) /locus_tag="Alide2_2182" /db_xref="GeneID:10483225" CDS complement(2278637..2280316) /locus_tag="Alide2_2182" /EC_number="1.3.3.5" /inference="protein motif:PRIAM:1.3.3.5" /note="KEGG: net:Neut_0014 twin-arginine translocation pathway signal; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2" /codon_start=1 /transl_table=11 /product="Bilirubin oxidase" /protein_id="YP_004388069.1" /db_xref="GI:330824766" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR011706" /db_xref="InterPro:IPR011707" /db_xref="GeneID:10483225" /translation="MTNHESLTRRDFMNGVGMGTAALLAGLPQAEAAPAMQSASDTFE PDVALELIALPRSVSLRPGRATSLWSYQSRVLKGDPASVQALPDSYLGPILRLRRGQK VRIDFINRLDQPSTVHWHGLHVPDTMDGHPRFAIGPGELYRYEFEVRNRAGTYWYHPH PHGHTGEQVYFGLAGLLLVSDEEEQALPLPRGQYDLPIVIQDRSFDDGNQLRYLSGTG PTARGDASGAPSAPGNTMGGRGMMGGMMSRGAMMSGGMGDMMTRMMGFLGDTILVNGR PESLIEVATHPYRLRILNGSNSRIYKLAWQDGRPLTVIGTDGGLLERPVHKDYVMLAP AERVELWADFSKDDLGTQLTMMSLAFEGAMGRMMDMMGGSFMGGAMGGSSLAAGVRFP IFTVKVARKANGSLELPDRLSAISWPRLQDAVNRAKPRTFRITMAQMQWGFNGRSFEM TAVAPNEVVKLRTTEVWEFANDSGMMTMAHAIHVHDQQFQVPERRHGMGNNRVRDGYV DQGWKDTVLVMPGDRVKLLMRFADYPGLYLYHCHMLEHEDLGLMRNYRIEA" misc_feature complement(2278640..2280292) /locus_tag="Alide2_2182" /note="Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]; Region: SufI; COG2132" /db_xref="CDD:32315" misc_feature complement(2279765..2280052) /locus_tag="Alide2_2182" /note="Multicopper oxidase; Region: Cu-oxidase; cl14658" /db_xref="CDD:187412" misc_feature complement(2278646..2278954) /locus_tag="Alide2_2182" /note="Multicopper oxidase; Region: Cu-oxidase; cl14658" /db_xref="CDD:187412" gene complement(2280491..2280604) /locus_tag="Alide2_2183" /db_xref="GeneID:10483226" CDS complement(2280491..2280604) /locus_tag="Alide2_2183" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388070.1" /db_xref="GI:330824767" /db_xref="GeneID:10483226" /translation="MPCIPVGSPGMDAFADSCRRAPNGALRVLMDQSSPGI" gene complement(2280760..2281107) /locus_tag="Alide2_2184" /db_xref="GeneID:10483227" CDS complement(2280760..2281107) /locus_tag="Alide2_2184" /inference="similar to AA sequence:KEGG:Ajs_2700" /note="KEGG: ajs:Ajs_2700 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388071.1" /db_xref="GI:330824768" /db_xref="GeneID:10483227" /translation="MTQQRLSLSSMIAAAAAVAALGLPGMASAAYEHPANNEQGVIVH PEHFKSEKTREQVIAETKAAMQQGRLSYGESNYPIRTPDAGPGKTREQVINELRSESP AERDARLRLYSAG" sig_peptide complement(2281018..2281107) /locus_tag="Alide2_2184" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.690 at residue 30" gene complement(2281233..2282642) /locus_tag="Alide2_2185" /db_xref="GeneID:10483228" CDS complement(2281233..2282642) /locus_tag="Alide2_2185" /inference="protein motif:TFAM:TIGR01386" /note="TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_2202 heavy metal sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain" /codon_start=1 /transl_table=11 /product="heavy metal sensor signal transduction histidine kinase" /protein_id="YP_004388072.1" /db_xref="GI:330824769" /db_xref="GO:0000155" /db_xref="GO:0004673" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003660" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR006290" /db_xref="GeneID:10483228" /translation="MLFRIRWGRLPLTQRLTLLFTAVAASVVLGLGALFLVETERHFV ELDRMALQDKQHLIEEILRNTNSADDARRRLGEALSYHHDLHAQVQDGQGALIFQSRG FIPTMRGDKTPQVGENHVFGVLRHGDTRFHTLVFKAAPAYSSTPLTVWIAADTDHHTQ FLDGLRRSLALYVFAAIAICGLLSWFAARQGLAPLRDMKSRAAKVTGQKLGERMPVQA VPVEMADLAQELNRMLDRLQEDFQRLTDFASDLAHELRTPISNLLTQTQVALATKRDA ASYRDILASNAEEFQRLARMVSDMLFLAKTERGVDLPHKERFSARQDGLALLDFYEAV AEEKRIRLRVEGDGEIEGDRLMFRRAVSNLLSNALRYTPEAGDVTIRIATTVQATTVT VENTGADIDAKILPRLFDRFYRADASRTHLDTDGSGLGLAITRAIAEAHGGGVTASSD QGRTCFTLVFPHHIAKPSS" misc_feature complement(2281260..2282618) /locus_tag="Alide2_2185" /note="heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386" /db_xref="CDD:162333" misc_feature complement(2281926..2282138) /locus_tag="Alide2_2185" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(2281728..2281919) /locus_tag="Alide2_2185" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2281743..2281745,2281755..2281757, 2281764..2281766,2281776..2281778,2281785..2281787, 2281797..2281799,2281848..2281850,2281857..2281859, 2281869..2281871,2281878..2281880,2281890..2281892, 2281902..2281904)) /locus_tag="Alide2_2185" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2281884..2281886) /locus_tag="Alide2_2185" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2281263..2281574) /locus_tag="Alide2_2185" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2281275..2281277,2281281..2281283, 2281296..2281298,2281302..2281304,2281350..2281361, 2281443..2281448,2281452..2281454,2281458..2281460, 2281464..2281466,2281533..2281535,2281542..2281544, 2281554..2281556)) /locus_tag="Alide2_2185" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2281542..2281544) /locus_tag="Alide2_2185" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2281353..2281355,2281359..2281361, 2281446..2281448,2281452..2281454)) /locus_tag="Alide2_2185" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2282643..2283326) /locus_tag="Alide2_2186" /db_xref="GeneID:10483229" CDS complement(2282643..2283326) /locus_tag="Alide2_2186" /inference="protein motif:TFAM:TIGR01387" /note="TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: ajs:Ajs_2725 two component heavy metal response transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal" /codon_start=1 /transl_table=11 /product="two component heavy metal response transcriptional regulator" /protein_id="YP_004388073.1" /db_xref="GI:330824770" /db_xref="GO:0000156" /db_xref="GO:0003677" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="InterPro:IPR006291" /db_xref="GeneID:10483229" /translation="MKILIVEDEPKTGEYLRQGLSEAGYVADLVPHGTDGLHMALHGA YDLVILDVMLPGLNGWQVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKP FSFAELLARVRIILRRAPAGNEAMVLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLE LLMRRHGEVLPRSLIASQVWDMNFDSDTNVIEVAMRRLRMKIDEGHPIKLIQTVRGMG YVLDVPQEE" misc_feature complement(2282664..2283320) /locus_tag="Alide2_2186" /note="heavy metal response regulator; Region: cztR_silR_copR; TIGR01387" /db_xref="CDD:130454" misc_feature complement(2283012..2283317) /locus_tag="Alide2_2186" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2283021..2283026,2283033..2283035, 2283090..2283092,2283150..2283152,2283174..2283176, 2283303..2283308)) /locus_tag="Alide2_2186" /note="active site" /db_xref="CDD:29071" misc_feature complement(2283174..2283176) /locus_tag="Alide2_2186" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2283150..2283158,2283162..2283167)) /locus_tag="Alide2_2186" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2283018..2283026) /locus_tag="Alide2_2186" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2282664..2282945) /locus_tag="Alide2_2186" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(2282673..2282675,2282688..2282690, 2282721..2282726,2282748..2282750,2282757..2282759, 2282811..2282816,2282871..2282873)) /locus_tag="Alide2_2186" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 2283451..2285271 /locus_tag="Alide2_2187" /db_xref="GeneID:10483230" CDS 2283451..2285271 /locus_tag="Alide2_2187" /inference="protein motif:TFAM:TIGR01480" /note="KEGG: bmj:BMULJ_00903 copper resistance transmembrane protein; TIGRFAM: Copper-resistance protein CopA; Twin-arginine translocation pathway, signal sequence; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2" /codon_start=1 /transl_table=11 /product="copper-resistance protein, CopA family" /protein_id="YP_004388074.1" /db_xref="GI:330824771" /db_xref="GO:0005507" /db_xref="InterPro:IPR001117" /db_xref="InterPro:IPR006311" /db_xref="InterPro:IPR006376" /db_xref="InterPro:IPR011706" /db_xref="InterPro:IPR011707" /db_xref="GeneID:10483230" /translation="MRFKTPSFSVSPGQAIQRRRFLRALAAGTALGTLDAALPAWARQ DLPVAHTGTPPELRGPVFDLTLTETRVDFDGRTGIATTVNGSLPAPTLRMREGETVTI RVTNRLRETASIHWHGIILPFQMDGVPGVSFAGIAPGETFTYRFTLEQSGTYWYHSHS GMQEVTGLYGALIVEPRGGEAIRAEREHVVLLSDWTGSDPMRALAKLKAQGDVFNQHR PTFVKFMQDVRAKGMHAAMAERDMWNAMRMSPSDLADLSSTVLSYLVNGRTPGANWTA LFNPGERVRLRCINGSGNTFYDVRIPGLKLTVVQADGQDVEPVTVDEFRFGPGQTYDV IVQPKDDAYTLFAQSMDRTGYARATLAVRPGLSAPVPALDAVQWLTMADMMGGMAQGG GHDMAAMGHGSMVGMNHAGMASMQGMGGMPGMASNPLQKPGTTVRHARTEWGPGADMR VDMPRTNLDDPGVGLRDNGRRVLTLADLKTVGGSLYAGGPEREIELHLTGNMERYTWS FDGLDFTDSRPVHFRYGERLRVILQNDTMMTHPMHLHGMWQELENASGEFVARLHTIP VQSAQRVSFLVSADALGRWVWHCHLMFHMEMGMFREVVVA" misc_feature 2283595..2285268 /locus_tag="Alide2_2187" /note="copper-resistance protein, CopA family; Region: copper_res_A; TIGR01480" /db_xref="CDD:162383" misc_feature 2283643..2283981 /locus_tag="Alide2_2187" /note="Multicopper oxidase; Region: Cu-oxidase; cl14658" /db_xref="CDD:187412" misc_feature 2284171..2284545 /locus_tag="Alide2_2187" /note="Multicopper oxidase; Region: Cu-oxidase; cl14658" /db_xref="CDD:187412" misc_feature 2284918..2285268 /locus_tag="Alide2_2187" /note="Multicopper oxidase; Region: Cu-oxidase; cl14658" /db_xref="CDD:187412" gene 2285478..2286476 /locus_tag="Alide2_2188" /db_xref="GeneID:10483231" CDS 2285478..2286476 /locus_tag="Alide2_2188" /inference="protein motif:PFAM:PF05275" /note="KEGG: bmj:BMULJ_00902 copper resistance protein B; manually curated; PFAM: Copper resistance B precursor" /codon_start=1 /transl_table=11 /product="copper resistance B" /protein_id="YP_004388075.1" /db_xref="GI:330824772" /db_xref="GO:0005507" /db_xref="InterPro:IPR007939" /db_xref="GeneID:10483231" /translation="MPAGSAPTADEASAMNHGSMPMRGSVPAANPGAPTMDHGVMPGM DHGPAPSQGADSGPASAMEHGAAPASGGSMAGMDDGAMQMQGGSPPADARDPNGYSDG FERGSGKYSLTGVPRLQLGDQMSFATLKVNRLERAWARHGDNATTYDLQARIGRDFNH LVIKAEGDVAQGKLQDSRTELLWGHAIAAFWDSQLGVRFDHGTGKDRQWLAAGVQGLA PYWFELDATAYLGSGGRTALRLEGSYDWLLTQKLILQPRTEWNFYGKSDPANAIGSGL ANASAGLRMRYEITRQIAPYIGVEWQHSFGRTGDFVRASGGSATQTRWLAGLSFWF" misc_feature 2285841..2286473 /locus_tag="Alide2_2188" /note="Copper resistance protein B precursor (CopB); Region: CopB; cl01476" /db_xref="CDD:194144" gene 2286499..2287005 /locus_tag="Alide2_2189" /db_xref="GeneID:10483232" CDS 2286499..2287005 /locus_tag="Alide2_2189" /inference="protein motif:PFAM:PF00127" /note="PFAM: Blue (type 1) copper domain; KEGG: net:Neut_0023 blue (type1) copper domain-containing protein" /codon_start=1 /transl_table=11 /product="blue (type 1) copper domain-containing protein" /protein_id="YP_004388076.1" /db_xref="GI:330824773" /db_xref="GO:0005507" /db_xref="GO:0009055" /db_xref="InterPro:IPR000923" /db_xref="GeneID:10483232" /translation="MKKSILISLFAAAAFPLAALAAGTHAGGHDMPASHGNMSMSEHS AMFGQPGDPAKVTRTIDVVMNDNMRFEPSTIDVKEGETVRFMVRNAGKTRHEMVLGSL DELKEHAKKMRANPGMVHSEPNQVNLKPGQRGTMVWQFTQPGKVDFACTEPGHLEAGM AGQVEVAH" sig_peptide 2286499..2286564 /locus_tag="Alide2_2189" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 at residue 22" misc_feature 2286613..2286999 /locus_tag="Alide2_2189" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" gene 2287060..2287401 /locus_tag="Alide2_2190" /db_xref="GeneID:10483233" CDS 2287060..2287401 /locus_tag="Alide2_2190" /inference="similar to AA sequence:KEGG:Ajs_2667" /note="KEGG: ajs:Ajs_2667 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388077.1" /db_xref="GI:330824774" /db_xref="GeneID:10483233" /translation="MTTIQRLLTISALAMGLALPMAGHAQVSPSPGQVAAPASDSMTD GEVKKIDPDNGKVTLKHGDIKNLDMPGMTMVFTVRDKGQLTKLKLGDKVQFMVVQEGG KMVVTDIQPAR" sig_peptide 2287060..2287137 /locus_tag="Alide2_2190" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.958 at residue 26" misc_feature 2287192..2287371 /locus_tag="Alide2_2190" /note="Copper binding periplasmic protein CusF; Region: CusF_Ec; cl02363" /db_xref="CDD:186524" gene 2287476..2287955 /locus_tag="Alide2_2191" /db_xref="GeneID:10483234" CDS 2287476..2287955 /locus_tag="Alide2_2191" /inference="similar to AA sequence:KEGG:Dtpsy_2195" /note="KEGG: dia:Dtpsy_2195 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388078.1" /db_xref="GI:330824775" /db_xref="GeneID:10483234" /translation="MVHIRHALIGLCVAAASVGVLAQGSDEHKGHHPVETTAPAAAAP ASAAAPPSQAMSPDMMAAMEQRMRAMHEKMAAAKTPQERQALMAEHMKTMQDGMRMME SMHSQMASRNPRAGMAGMQHDPQMMERRMAMMESMMQMMMDRMSTPPASTPSMPSAK" sig_peptide 2287476..2287544 /locus_tag="Alide2_2191" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.982 at residue 23" gene 2287966..2288244 /locus_tag="Alide2_2192" /db_xref="GeneID:10483235" CDS 2287966..2288244 /locus_tag="Alide2_2192" /inference="similar to AA sequence:KEGG:Dtpsy_2194" /note="KEGG: dia:Dtpsy_2194 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388079.1" /db_xref="GI:330824776" /db_xref="GeneID:10483235" /translation="MTHDHASHPQSVQSGGFWRSRYALGLLVFGAVAGYFLWTEHRAH LAQWWPYAFLLACPLMHVFMHKGHGDHGGHGGGSGATGQGTGQNSDRS" misc_feature 2288041..>2288157 /locus_tag="Alide2_2192" /note="Protein of unknown function (DUF2933); Region: DUF2933; pfam11666" /db_xref="CDD:192791" gene 2288249..2288890 /locus_tag="Alide2_2193" /db_xref="GeneID:10483236" CDS 2288249..2288890 /locus_tag="Alide2_2193" /inference="similar to AA sequence:KEGG:Dtpsy_2193" /note="KEGG: dia:Dtpsy_2193 isoprenylcysteine carboxyl methyltransferase" /codon_start=1 /transl_table=11 /product="isoprenylcysteine carboxyl methyltransferase" /protein_id="YP_004388080.1" /db_xref="GI:330824777" /db_xref="GeneID:10483236" /translation="MEHTGSSYGLWTLVVLNVAIFVMFAFSFFKPASARDWRSFGAFT AFIVALFVEMYGFPLTIYFLSGWLGQKVPGVDLLNHNAGHLLELLFGWGGDPHLGPFH ILSYLFIGGGFWLLAAAWPVLYEAQRQKRLAHTGVYARVRHPQYIAFVLIMFGFLLQW PTLLTLLMFPVLVLMYARLARSEEQESARRFGQAWLDYACRVPRFIPRLGGGA" misc_feature 2288291..2288878 /locus_tag="Alide2_2193" /note="Isoprenylcysteine carboxyl methyltransferase (ICMT) family; Region: ICMT; cl00763" /db_xref="CDD:186178" gene 2288947..2289045 /locus_tag="Alide2_2194" /db_xref="GeneID:10483237" CDS 2288947..2289045 /locus_tag="Alide2_2194" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388081.1" /db_xref="GI:330824778" /db_xref="GeneID:10483237" /translation="MDDIPQYVADSLREQVQRTKQLGADIKAIEVR" gene 2289146..2289424 /locus_tag="Alide2_2195" /db_xref="GeneID:10483238" CDS 2289146..2289424 /locus_tag="Alide2_2195" /inference="protein motif:PFAM:PF00403" /note="PFAM: Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_1492 heavy metal transport/detoxification protein" /codon_start=1 /transl_table=11 /product="Heavy metal transport/detoxification protein" /protein_id="YP_004388082.1" /db_xref="GI:330824779" /db_xref="GO:0046872" /db_xref="InterPro:IPR006121" /db_xref="GeneID:10483238" /translation="METIELKVAGMTCASCAISVSKALKRVPGVDDVHVDLARGTASV TGGQTSQSTPALITALSVAGYEASASSPPASASGHGAGPKGHGGGCCR" misc_feature 2289158..2289343 /locus_tag="Alide2_2195" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature order(2289176..2289184,2289191..2289193) /locus_tag="Alide2_2195" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" gene 2289434..2291098 /locus_tag="Alide2_2196" /db_xref="GeneID:10483239" CDS 2289434..2291098 /locus_tag="Alide2_2196" /inference="similar to AA sequence:KEGG:Rpic12D_5298" /note="KEGG: rpf:Rpic12D_5298 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388083.1" /db_xref="GI:330824780" /db_xref="GeneID:10483239" /translation="MDTTTDSQRIAAPAALFAAYWGDMLWRAVATGEVLRQRANNMTE HEAAGMPVLLHFESEQVVDGHDMQPASNYRLLRVTRCGTDALEKHVRKGASPVLVVDP RAGHGPGIGGFKRDSEVGMALLEGHPVYFVVFDPEPVEGQTMGAVVQTLAAFIDIVAK RHRGKAPIVYGNCQGGWAITLALSHCEHRAALAVLNGSPLSYWAGERGINPMRLLGGF TGGIWPAHWVSDLGAGRFDGAWLVQNFEALRPEGVFKKYDTLFAQPESERDRFLEFER WWNGFYQIAREEMLSIAGDLFVGNHLEDGEVVVDDHCRADLRRVGAPLMIFCSNGDNI TPPHQALGWLKAVYPTTADLVAAGQRVVYLMHQHVGHLGIFVSAGVARREHRAILHHA ESIQALDPGLYEMVLDDSTSADLAAGARFEPRRLEDLPFDANPAGFDKVEVLSEATER FYAQWVSPWVRFAVTLESARELRALHPMRVSRKVWSEQVTPTLALLPWMQRWLEQCGA QGPHRVVNPWYQLERAGADAVEQAMESWRKGRDLWAELVFEQAYAS" misc_feature 2289512..2291095 /locus_tag="Alide2_2196" /note="PHB de-polymerase C-terminus; Region: PHB_depo_C; cl14907" /db_xref="CDD:196868" gene 2291107..2291610 /locus_tag="Alide2_2197" /db_xref="GeneID:10483240" CDS 2291107..2291610 /locus_tag="Alide2_2197" /inference="protein motif:PFAM:PF00034" /note="PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2192 cytochrome c class I" /codon_start=1 /transl_table=11 /product="cytochrome c class I" /protein_id="YP_004388084.1" /db_xref="GI:330824781" /db_xref="GO:0005506" /db_xref="GO:0009055" /db_xref="GO:0020037" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10483240" /translation="MALRNLHLGAAGLLTLLLVTGAGYFSLRAGGWQAPPLLHSLRPD DPQVLRTGARIYAQQCTACHGAKGEGQPNWRERGPDGLLPAPPHDASGHTWHHPDEQL FAITKYGLAKLIKQPDYRTAMPIYDGMLSDDEIVTTLSWIKAQWPPEVRRRHDEINNE YRKSLAR" sig_peptide 2291107..2291196 /locus_tag="Alide2_2197" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.518 at residue 30" misc_feature 2291260..2291544 /locus_tag="Alide2_2197" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 2291728..2294196 /locus_tag="Alide2_2198" /db_xref="GeneID:10483241" CDS 2291728..2294196 /locus_tag="Alide2_2198" /EC_number="3.6.3.4" /inference="protein motif:TFAM:TIGR01525" /note="TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2710 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase" /codon_start=1 /transl_table=11 /product="heavy metal translocating P-type ATPase" /protein_id="YP_004388085.1" /db_xref="GI:330824782" /db_xref="GO:0004008" /db_xref="GO:0005524" /db_xref="GO:0046873" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR005834" /db_xref="InterPro:IPR006403" /db_xref="InterPro:IPR006416" /db_xref="InterPro:IPR008250" /db_xref="GeneID:10483241" /translation="MNDHNHPHGKTDRAALNAIPTAPGAAHAIDGAKPGAPDAAISYV CPMHPEVRQDRPGRCPKCQMLLVPDGEAAQSHPHAHHHHHHHHHHHQHGHPAAGQAPA ASGAAPQETPTGTIYTCPMHPEIRQDHPGNCPICGMTLEPLIPLDEEDNSELVDFQRR FWWTLPLSVSVTVLAMFGHRLGWFAMATQSWIELVLSLPVVLWTGWPFFVRGWQSVMK RSPNMWTLIGLGTAAAFVYSVVATIAPGVFPESFVAMGRVAVYFEAAVVIISLTMLGQ ILELKARSQTSAAIKSLLGLAPKTARRINADGSEEDVPLSHVHVGDVLRVRPGEKVPV DGLVTEGHSAVDESMLTGEPIPVTKRAGDKLIGATLNTSGALVMRAEKVGAATMLSQI VQMVANAQRSKAPMQRMADVVAGKFVLVVVAIAVATFFVWGLFGPEPSWVFGLINAVA VLIIACPCALGLATPMSVMVATGRAATQGVLFRDAGAIEKLREVNTLIVDKTGTLTEG RPAFDTVIAAPGFASDEVLRLAASLDQGSEHPLADAIVSAARAKGLDLAKPTDFESGS GIGVRGTVEGRRLALGNSALMEQEGVDVAPLKLDAERLRGEGASVMHLAVDGHLAGLL AVTDPVKPSTPEAIRTLHASGLRIVMATGDGLTTARAVGTRLGIDEVHGEVKPADKLA LVERLQHDGHVVAMAGDGINDAPALARADVGVAMGTGTDVAMNSGQVTLVKGDLRGIA AAREISTSTVRNMRQNLLFAFVYNGIGVPIAAGVLYPITGWLLSPLIAALAMSLSSAS VIFNALRLRGEPQTAKIPSKEDAS" misc_feature 2292058..2294151 /locus_tag="Alide2_2198" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature 2292526..2293197 /locus_tag="Alide2_2198" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature 2293543..>2293869 /locus_tag="Alide2_2198" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 2294193..2294432 /locus_tag="Alide2_2199" /db_xref="GeneID:10483242" CDS 2294193..2294432 /locus_tag="Alide2_2199" /inference="similar to AA sequence:KEGG:Maqu_0130" /note="KEGG: maq:Maqu_0130 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388086.1" /db_xref="GI:330824783" /db_xref="GeneID:10483242" /translation="MMYGIEWNGWFGLHWLTMLLGAVLIVLPFWKIFAKAGFPGWFGL LMVVPLVNLIALYVLAFSEWPGSRRAAAETLPGPR" gene 2294452..2294910 /locus_tag="Alide2_2200" /db_xref="GeneID:10483243" CDS 2294452..2294910 /locus_tag="Alide2_2200" /inference="similar to AA sequence:KEGG:AXYL_01135" /note="KEGG: axy:AXYL_01135 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388087.1" /db_xref="GI:330824784" /db_xref="GeneID:10483243" /translation="MACIRSIVTHWGRRIVGGLVAALLFSQMALAMYACPTPDADAHA ASMQMAGMAMDEAAGMSAMPGCHAMPGTMDDESPQLCRVHCSGDAKPAPSPQGLDVPS TAAAHAVWIAYLLPGVFDPQSSTGARADPAWLDHRTGSLPLYLTFQVLRN" sig_peptide 2294452..2294547 /locus_tag="Alide2_2200" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.838) with cleavage site probability 0.825 at residue 32" gene 2294986..2296302 /locus_tag="Alide2_2201" /db_xref="GeneID:10483244" CDS 2294986..2296302 /locus_tag="Alide2_2201" /inference="similar to AA sequence:KEGG:AXYL_01137" /note="KEGG: axy:AXYL_01137 heavy metal RND efflux outer membrane protein, CzcC family" /codon_start=1 /transl_table=11 /product="heavy metal RND efflux outer membrane protein, CzcC family" /protein_id="YP_004388088.1" /db_xref="GI:330824785" /db_xref="GeneID:10483244" /translation="MLVFSSGAPGERRPALGRVVVRAISYRAWIHRLSILSIAVTGSM LASSGAYALSFAEAREIAEQQSPRVSAQRLQIDAAASAEKAAGTLPDPKLSVGLENFP VSGMDRWSLTRESMTGQRLALMQEVPNQAKREAKVASAQARVERERAALVLQRLQIRQ ELGLAWIAAQAVEQRDRLLVELLAENQRLQDSLPARVAGGSAQAGDLLAAQQEALALS DRRDDLQRDRAKARAMLRRWVGPRADETLRGDTGPLIRPVAQLRTDLSSHAELALYPA MQSMARAESHEAQSESRGDWSWEVAYTRRDRRWGDMVSFQVTFDLPWQKERRQTPMIQ AKQRELERLEAEQEDVARKHLQELDDSAAELQALDSQIERLKSTGLQLAQGRADLALS NYRAAKGDLGAVLSARVQVLEARLRLIDLQAQRDGVTTRLNSLIAD" misc_feature 2295148..>2295558 /locus_tag="Alide2_2201" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" misc_feature 2295778..2296293 /locus_tag="Alide2_2201" /note="Outer membrane efflux protein; Region: OEP; pfam02321" /db_xref="CDD:190278" gene 2296317..2297831 /locus_tag="Alide2_2202" /db_xref="GeneID:10483245" CDS 2296317..2297831 /locus_tag="Alide2_2202" /inference="protein motif:TFAM:TIGR01730" /note="TIGRFAM: Secretion protein HlyD; KEGG: axy:AXYL_01138 RND family efflux transporter MFP subunit 3" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_004388089.1" /db_xref="GI:330824786" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10483245" /translation="MHTSLKKSVAGLTLIALGVAAGWGLSQWRAGTTHAADGADSHAA ATTERKVLYWYDPMSPTQKFDKAGKSPFMDMDLVPKYADEDDKDGKGLSVSSQTVQAL GLRTAEVVRRAIAADVDVVGTVLLNDRDVSIVQARSAGFVERVYARAPGDVIAAGAPL ADLLLPEWVAAQREFLAVRGLRDESLTMAARQRLLLLGMPQALVVQVERTGEPRGIYT VTTPRGGLLAELMVRQGMTVSAGASLARVNGLATVWIEAAVPEAQSGPLQLGHEAQVR LAAFPGEVLKARIVSILPQANSDTRTVRVRLELGNPGQRLKAGMSGQITLKGREQPAL LVPSEAVIRTGRRALAYVVHGPGKFHPVDVQLGAEIGDQLVVQGGLEAGQQVVASAQF LIDSEASLRGVLPAQPSASTPVQGHGEHGVSAPPAAAANAFTVRGVIEEVSATELTLA HDAVPALKWPAMTMGFRLADPKLAVGLAPKQAVRFTFAKQGEDYVITAIERAKP" sig_peptide 2296317..2296424 /locus_tag="Alide2_2202" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.850) with cleavage site probability 0.630 at residue 36" misc_feature 2296458..2297528 /locus_tag="Alide2_2202" /note="copper/silver efflux system membrane fusion protein CusB; Provisional; Region: PRK09783" /db_xref="CDD:182073" misc_feature 2297625..2297789 /locus_tag="Alide2_2202" /note="Copper binding periplasmic protein CusF; Region: CusF_Ec; cl02363" /db_xref="CDD:186524" gene 2297828..2300947 /locus_tag="Alide2_2203" /db_xref="GeneID:10483246" CDS 2297828..2300947 /locus_tag="Alide2_2203" /inference="protein motif:TFAM:TIGR00914" /note="KEGG: axy:AXYL_01139 cation efflux system protein CusA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein" /codon_start=1 /transl_table=11 /product="CzcA family heavy metal efflux pump" /protein_id="YP_004388090.1" /db_xref="GI:330824787" /db_xref="GO:0008324" /db_xref="InterPro:IPR001036" /db_xref="InterPro:IPR004763" /db_xref="GeneID:10483246" /translation="MIAKLIRWSVANRFLVLLATAMLAAWGMWGVRSTPVDALPDLSD VQVIIRTSYPGQAPQIVENQVTYPLATTMLSVPGAKTVRGFSFFGDSFVYVLFEDGTD LYWARSRVLEYLNQVQGRLPATAKPALGPDATGVGWIFQYALLDRTGKNDLAQLRALQ DWFLKFELKSLPNVAEVASVGGMVRQYQVVLDPIRLASHGLSQGQVRDALVNANQETG GSVLELSGAEYMVRASGYLKSLDDFRAVPLVARGGVPIRLGDVATLQVGPEMRRGIAE LDGEGEVAGGVVILRSGKNAQETIAAVKAKLAQLQASLPQGVEIVTTYDRSALIERAI RNLTTKLGEEFLVVALVCALFLWHLRSALVAIISLPLGVMTAFLVMRYQGINANIMSL GGIAIAVGAMVDAAVVMIENAHKKLEAWQHAHPDKRLQGKERWEVITHAAQEVGPALF FSLLIITLSFIPVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLIPVLMGYWIRGRI PDEQKNPITRMLIAVYRPVLEWVLRRPRATLLIAVLALATTAWPLARLGGEFLPRLDE GDLLYMPSALPGLSAQRATELLQLSNRMIKTVPEVERVFGKAGRAETATDPAPLEMFE TTVKLKPREQWRAGMTPEKLVEELDHAVKIPGLSNIWIPPIRNRIDMLATGIKSPIGV KVTGNDLHVIDRIAAEVEQVAKNVPGVTSSLAERLTGGRYVDVQIDRVAAGRYGLNVA DVQAVVAGAIGGETVSETVEGLARFPINLRYPREWRDSPQRLAQLPISTPMGQQITLG TVAHIAITDGPPMLKSENARPSGWVYVDVRGRDLASVANELRDAIGRQVKLEPGVSIA YSGQFEYMERANARLKVVVPATLLIIFVLLYLTFGRVDEAGLIMATLPFALTGGIWFL YLMNYNLSIATGVGFIALAGVAAEFGVVMLIYLKHALDERCPDGRRPTQEELLDAIRE GAVLRVRPKAMTVAVILAGLVPIVWGSGTGSEVMSRIAAPMLGGMVTAPLLSLFVIPA AFVLMRRPR" misc_feature 2297828..2300944 /locus_tag="Alide2_2203" /note="heavy metal efflux pump (cobalt-zinc-cadmium); Region: 2A0601; TIGR00914" /db_xref="CDD:129992" gene 2300973..2301524 /locus_tag="Alide2_2204" /pseudo /db_xref="GeneID:10483247" gene complement(2301591..2302394) /locus_tag="Alide2_2205" /db_xref="GeneID:10483248" CDS complement(2301591..2302394) /locus_tag="Alide2_2205" /inference="protein motif:PFAM:PF01695" /note="KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="IstB domain-containing protein ATP-binding protein" /protein_id="YP_004388091.1" /db_xref="GI:330824788" /db_xref="GO:0005524" /db_xref="InterPro:IPR002611" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10483248" /translation="MRHDPAIASIVIMLRELKMHGMAQAVAELAEQGAPAFDAAQPIL SQLLKAETAEREVRSVAYQLKVARFPAYRDLAGFDFSHSEVNEALVRQLHRCEFLENA NNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEEEKAQGKPGQIAH RLAYADLVILDELGYLPFSTSGGALLFHLLSKLYERTSVVITTNLSFSEWANVFGDAK MTTALLDRLTHHCHILETGNDSYRFKNSSAQQPPQTTKKEKATKNLSTT" misc_feature complement(2301663..2302367) /locus_tag="Alide2_2205" /note="transposase/IS protein; Provisional; Region: PRK09183" /db_xref="CDD:181681" misc_feature complement(2301696..2302139) /locus_tag="Alide2_2205" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(2302047..2302070) /locus_tag="Alide2_2205" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2301783..2301785,2301882..2301884, 2302044..2302067)) /locus_tag="Alide2_2205" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2301879..2301896) /locus_tag="Alide2_2205" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2301717..2301719) /locus_tag="Alide2_2205" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(2302384..2303910) /locus_tag="Alide2_2206" /db_xref="GeneID:10483249" CDS complement(2302384..2303910) /locus_tag="Alide2_2206" /inference="protein motif:PFAM:PF00665" /note="PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10" /codon_start=1 /transl_table=11 /product="integrase catalytic subunit" /protein_id="YP_004388092.1" /db_xref="GI:330824789" /db_xref="GO:0003677" /db_xref="InterPro:IPR001584" /db_xref="GeneID:10483249" /translation="MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLRVGEA EPHYAKRVSPSKLDPFALKLAGWLKTEAGRSRKQRRTVKQMYVDLQALGYGGSYNRVA AFARLWHEQRLVAQQTTGRGTFVPLAFGPGEAFQFDWSEDWAVLAGVRTKLQVAHFKL SHSRAFYLRAYPLQTHEMLFDAHNHAFAVLGGVPRRGIYDNMRTAVDRVRRGKERDVN ARFAAMVSHFLFEAEFCNPASGWEKGQVEKNVRDARHRLWQVVPPFPSLPDLNAWLEE RCVALWHEIEHGKLPGTVADIWTEEKNDLMPMPRPFDGFVEHTKRVSPTCLVHFERNR YSVPAPYANRPVSLRVYADRLVVAAEGQIVCEHQRLIERNHHGAGQTVYDWRHYLAVL QRKPGALRNGAPFLELPAAFKRLQAALLKQPGGDREMVEVLALVLHHDEQAVLAAVEL ALESGAASKTHILNVLHRLLDGKPAPAPVTSPQALKLSVEPQANVLRYDQLREVRYAS " misc_feature complement(2303044..2303889) /locus_tag="Alide2_2206" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584" /db_xref="CDD:34222" misc_feature complement(2303140..2303529) /locus_tag="Alide2_2206" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene 2304015..2304365 /locus_tag="Alide2_2207" /pseudo /db_xref="GeneID:10483250" gene 2304823..2305845 /locus_tag="Alide2_2208" /db_xref="GeneID:10483251" CDS 2304823..2305845 /locus_tag="Alide2_2208" /inference="protein motif:PFAM:PF00589" /note="PFAM: Integrase, catalytic core, phage; KEGG: bam:Bamb_2021 phage integrase family protein" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004388093.1" /db_xref="GI:330824790" /db_xref="GO:0003677" /db_xref="InterPro:IPR002104" /db_xref="GeneID:10483251" /translation="MLTDTALRNLKPKSLTYKVSDRDGMYVTVSPAGTITFRYDYRLH GRRETLTIGRYGALGISLALAREKLLDAKKAVMAGRSPALEKQREKRRLTAAKNFGDL ALKWLADAKMADSTRAMRKHVVDRDILPVFQNRLLNEITADDLRALCNRVKARGAPAT AVHVRDIVKQIYAFAILHGEKVDNPANDVAAASIATFVPKDRALSPTEIRLAFHQLES IATYPTIRLALRMVLLTLVRKSELIEATWSEIDFENATWTIPKQRMKGRNPHVVYLSR QALDMHNCAGPAGLQHLPIHVVTQTKKPAGNWCLRACKRLNPLQAACAKAGAGRIRAR RGAASR" misc_feature 2304898..>2305665 /locus_tag="Alide2_2208" /note="Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801" /db_xref="CDD:29502" gene complement(2305814..2307109) /locus_tag="Alide2_2209" /db_xref="GeneID:10483252" CDS complement(2305814..2307109) /locus_tag="Alide2_2209" /inference="protein motif:TFAM:TIGR01798" /note="KEGG: dia:Dtpsy_2288 type II citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like" /codon_start=1 /transl_table=11 /product="citrate synthase I" /protein_id="YP_004388094.1" /db_xref="GI:330824791" /db_xref="GO:0004108" /db_xref="InterPro:IPR002020" /db_xref="InterPro:IPR010953" /db_xref="GeneID:10483252" /translation="MKLADNKATLSFSNGSPSVELPVYQGSIGPDVIDIRKLYGQTGM FTYDPGFLSTASCQSAITYIDGDKGELLYRGYPIEQLATKCDYLDTCYLLLNGELPNA GQRDDFHKLVLKHTMVHEQMQFFLRGFRRDAHPMAVLTGLIGALSAFYHDSTDINNPE HRHISAIRLISKLPTLVAMAYKYGVGQPFMYPRNELSYAGNFLRMMFGTPCEDYKVNP VIERAMDRIFILHADHEQNASTSTVRLCGSSGTNPFAAIAAGVACLWGPAHGGANEAC LNMLEHLQANGGVAKVGEFMEQVKDKNSGVKLMGFGHRVYKNYDPRAKLMQETCNEVL AELGLEKDPLFALAKQLEKIALEDDYFVQRKLYPNVDFYSGIVQRAIGIPVNLFTGIF ALARTVGWIAQLNEMIGDPEYKIGRPRQLFTGSPRRDVP" misc_feature complement(2305838..2307049) /locus_tag="Alide2_2209" /note="Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS...; Region: EcCS_like; cd06114" /db_xref="CDD:99867" misc_feature complement(order(2305838..2305864,2305868..2305870, 2306165..2306170,2306291..2306296,2306300..2306317, 2306321..2306326,2306345..2306347,2306354..2306365, 2306372..2306374,2306384..2306389,2306396..2306410, 2306663..2306671,2306678..2306680,2306687..2306689, 2306699..2306701,2306711..2306713,2306723..2306731, 2306735..2306740,2306747..2306749,2306780..2306785, 2306792..2306797,2306804..2306806,2306810..2306821, 2306843..2306845,2306858..2306860,2306870..2306872, 2306879..2306890,2306924..2306926,2306930..2306980)) /locus_tag="Alide2_2209" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99867" misc_feature complement(2305856..2306962) /locus_tag="Alide2_2209" /note="Citrate synthase; Region: Citrate_synt; pfam00285" /db_xref="CDD:189486" misc_feature complement(order(2305859..2305861,2305868..2305870, 2305922..2305924,2305934..2305936,2305997..2305999, 2306003..2306005,2306012..2306014,2306018..2306020, 2306144..2306146,2306159..2306161,2306168..2306191, 2306285..2306287,2306294..2306296,2306300..2306308, 2306399..2306401,2306408..2306410,2306954..2306956)) /locus_tag="Alide2_2209" /note="active site" /db_xref="CDD:99867" misc_feature complement(order(2305922..2305924,2306003..2306005, 2306144..2306146,2306168..2306182,2306186..2306191, 2306303..2306308,2306399..2306401,2306408..2306410, 2306954..2306956)) /locus_tag="Alide2_2209" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(2306528..2306530,2306594..2306596, 2306606..2306608,2306660..2306662,2306753..2306773, 2306777..2306779)) /locus_tag="Alide2_2209" /note="NADH binding [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(2306480..2306485,2306525..2306563, 2306714..2306731,2306738..2306764)) /locus_tag="Alide2_2209" /note="cationic pore residues; other site" /db_xref="CDD:99867" misc_feature complement(order(2305859..2305861,2305922..2305924, 2305934..2305936,2305997..2305999,2306144..2306146, 2306171..2306173,2306300..2306305,2306399..2306401, 2306408..2306410)) /locus_tag="Alide2_2209" /note="oxalacetate/citrate binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(2305868..2305870,2305997..2305999, 2306003..2306005,2306012..2306014,2306018..2306020, 2306159..2306161,2306168..2306170,2306174..2306191, 2306285..2306287,2306294..2306296,2306303..2306308)) /locus_tag="Alide2_2209" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(2305997..2305999,2306171..2306173, 2306303..2306305)) /locus_tag="Alide2_2209" /note="catalytic triad [active]" /db_xref="CDD:99867" gene complement(2307156..2307428) /locus_tag="Alide2_2210" /db_xref="GeneID:10483253" CDS complement(2307156..2307428) /locus_tag="Alide2_2210" /inference="protein motif:PFAM:PF03937" /note="PFAM: Protein of unknown function DUF339; KEGG: ajs:Ajs_2797 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388095.1" /db_xref="GI:330824792" /db_xref="InterPro:IPR005631" /db_xref="GeneID:10483253" /translation="MTDDALLDARDVAVLRWRSRRGLVENDLFIERFFERHGANLTVG QGRAVTMLMNLPDNDLLDLLLRRKEPEGEIDTDQVRAVLEQMRQRA" misc_feature complement(<2307294..2307380) /locus_tag="Alide2_2210" /note="Flavinator of succinate dehydrogenase; Region: Sdh5; cl01110" /db_xref="CDD:186339" gene complement(2307449..2308153) /locus_tag="Alide2_2211" /db_xref="GeneID:10483254" CDS complement(2307449..2308153) /locus_tag="Alide2_2211" /EC_number="1.3.5.1" /inference="protein motif:TFAM:TIGR00384" /note="TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; KEGG: dac:Daci_2424 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: Ferredoxin" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase and fumarate reductase iron-sulfur protein" /protein_id="YP_004388096.1" /db_xref="GI:330824793" /db_xref="GO:0016491" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR004489" /db_xref="GeneID:10483254" /translation="MQRTFKIYRYDPDKDAKPYMQTLQVELDGHERMLLDALLKLKKQ DPSLSFRRSCREGVCGSDAMNINGKNGLACLTNMKTLQGDIVLKPLPGLPVIRDLIVD MTQFFNQYHSIKPYLQNDEPTSPSKERLQSPEEREELDGLYECILCASCSTSCPSFWW NPDKFVGPAGLLQAYRFIADSRDKVTGERLDNLEDPYRLFRCHTIMNCVDVCPKGLKP AAAISKIKELMVRRAI" misc_feature complement(2307452..2308144) /locus_tag="Alide2_2211" /note="succinate dehydrogenase iron-sulfur subunit; Reviewed; Region: sdhB; PRK05950" /db_xref="CDD:180322" gene complement(2308182..2309987) /locus_tag="Alide2_2212" /db_xref="GeneID:10483255" CDS complement(2308182..2309987) /locus_tag="Alide2_2212" /EC_number="1.3.5.1" /inference="protein motif:TFAM:TIGR01816" /note="TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: dia:Dtpsy_2285 succinate dehydrogenase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, flavoprotein subunit" /protein_id="YP_004388097.1" /db_xref="GI:330824794" /db_xref="GO:0016491" /db_xref="GO:0050660" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR004112" /db_xref="InterPro:IPR011281" /db_xref="InterPro:IPR014006" /db_xref="GeneID:10483255" /translation="MSYTKKDIAVRKFDVVIVGAGGSGMRASLELSRAGLSVACLSKV FPTRSHTVAAQGGVSASLGNMSEDNWHYHFYDTIKGGDWLSDQDAVEFMCREAPNVVI ELEHFGMPFDRNPDGTIYQRPFGGHTANYGEKPVQRACAAADRTGHAMLHTLYQKNVE SKTNFFVEWMALDLIRNSAGDVVGVTALELETGDLYELHAKAVLLATGGAGRIFAAST NAFINTGDGLGMAARAGIPLQDLEFWQFHPTGVAGAGVLLTEGCRGEGAILLNSNGER FMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNKDYILMKLDHLGADTIRKRLPSV EEIGHNFANVDITKEPIPVVPTIHYQMGGIPTNVHGQVVVWDGEKNNVVNGLYAVGEC AAVSVHGANRLGTNSLLDLLVFGKSAGKHIVEFVKGFGDHHAVPADASDRTLARLNQL EDSKDGVYAQDLANDIRQTMQSHAGVFRTQKGMDEGVEKIAAIRERVSSIGLKDKSKV WNTARMEALEVDNLIEVAQATMVSAAARKECRGAHTVDDYEHPADHPTAPLGRDDVNW LKHTLWHSQTNSLTYKPVNMKPLTVDSIPPKVRTF" misc_feature complement(2308185..2309987) /locus_tag="Alide2_2212" /note="succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK07057" /db_xref="CDD:180814" misc_feature complement(2308722..2309948) /locus_tag="Alide2_2212" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(2308185..2308598) /locus_tag="Alide2_2212" /note="domain; Region: Succ_DH_flav_C; pfam02910" /db_xref="CDD:190472" gene complement(2310038..2310403) /locus_tag="Alide2_2213" /db_xref="GeneID:10483256" CDS complement(2310038..2310403) /locus_tag="Alide2_2213" /inference="protein motif:TFAM:TIGR02968" /note="KEGG: aav:Aave_2203 succinate dehydrogenase subunit D; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, hydrophobic membrane anchor protein" /protein_id="YP_004388098.1" /db_xref="GI:330824795" /db_xref="GO:0000104" /db_xref="GO:0020037" /db_xref="InterPro:IPR000701" /db_xref="InterPro:IPR014312" /db_xref="GeneID:10483256" /translation="MSATYGYKRTVVGAHYGWRDFLVQRITAVLIGVFTLLVLCKLLF TSGPIGYDTWAGIFAPQWMKALTFSVIVAVIWHAWVGVCSVWYDYAKPAGLRLVLQAL SIIWLVSCGGWAVQVLWRL" misc_feature complement(2310047..2310346) /locus_tag="Alide2_2213" /note="Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the...; Region: SQR_TypeC_SdhD; cd03494" /db_xref="CDD:48055" misc_feature complement(order(2310065..2310067,2310074..2310076, 2310140..2310142,2310242..2310244,2310251..2310253, 2310329..2310331)) /locus_tag="Alide2_2213" /note="SdhC subunit interface [polypeptide binding]; other site" /db_xref="CDD:48055" misc_feature complement(order(2310161..2310163,2310173..2310175, 2310182..2310184,2310308..2310310,2310320..2310322)) /locus_tag="Alide2_2213" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:48055" misc_feature complement(order(2310257..2310259,2310266..2310268, 2310278..2310280)) /locus_tag="Alide2_2213" /note="cardiolipin binding site; other site" /db_xref="CDD:48055" misc_feature complement(order(2310131..2310133,2310140..2310145, 2310152..2310154)) /locus_tag="Alide2_2213" /note="Iron-sulfur protein interface; other site" /db_xref="CDD:48055" misc_feature complement(2310137..2310139) /locus_tag="Alide2_2213" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:48055" gene complement(2310428..2310859) /locus_tag="Alide2_2214" /db_xref="GeneID:10483257" CDS complement(2310428..2310859) /locus_tag="Alide2_2214" /inference="protein motif:TFAM:TIGR02970" /note="KEGG: dia:Dtpsy_2283 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, cytochrome b556 subunit" /protein_id="YP_004388099.1" /db_xref="GI:330824796" /db_xref="GO:0000104" /db_xref="InterPro:IPR000701" /db_xref="InterPro:IPR014314" /db_xref="GeneID:10483257" /translation="MTQLAKKRPEFRNIHAFKDLPSYRWPLAALVSGMHRISGLILFL LLPFIIWLFDKSVSSEISFGSFTAAFTTGIGFVPAWFVKLVVLALIWSYLHHLAAGVR HLVLDVTHKTTKDFGRHSAAATLVFSIMLTVILGAKLFGLY" misc_feature complement(2310449..2310805) /locus_tag="Alide2_2214" /note="Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the...; Region: SQR_TypeC_SdhC; cd03499" /db_xref="CDD:48060" misc_feature complement(order(2310536..2310538,2310542..2310544, 2310551..2310553,2310752..2310754,2310773..2310775, 2310782..2310784,2310788..2310796)) /locus_tag="Alide2_2214" /note="Iron-sulfur protein interface; other site" /db_xref="CDD:48060" misc_feature complement(order(2310752..2310754,2310761..2310766, 2310785..2310787)) /locus_tag="Alide2_2214" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:48060" misc_feature complement(order(2310455..2310457,2310539..2310541, 2310602..2310604,2310671..2310673,2310698..2310703, 2310710..2310712,2310719..2310721,2310752..2310754)) /locus_tag="Alide2_2214" /note="SdhD (CybS) interface [polypeptide binding]; other site" /db_xref="CDD:48060" misc_feature complement(order(2310569..2310574,2310731..2310736, 2310752..2310754)) /locus_tag="Alide2_2214" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:48060" gene complement(2311010..2311801) /locus_tag="Alide2_2215" /db_xref="GeneID:10483258" CDS complement(2311010..2311801) /locus_tag="Alide2_2215" /inference="protein motif:PFAM:PF07702" /note="KEGG: dia:Dtpsy_2282 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator with UTRA sensor domain" /protein_id="YP_004388100.1" /db_xref="GI:330824797" /db_xref="GO:0003677" /db_xref="GO:0003700" /db_xref="GO:0030528" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011663" /db_xref="GeneID:10483258" /translation="MPPPPPPSTEDPPSMSGSVGSVTPAFSPLYQQIKGLILHSLQHG EWKPGEAIPSEIELAARFRVSQGTVRKAIDELAAENLVTRRQGKGTFVSTHTERQVQY RFLKLLPDEGDASVEGPAQRTILECRRARASVEVARILALRAGDPVIQIKRILSFTGV PTILEDIWLPGQAFKGLTAEQMAHYQGPTYAMFEIDFGVRMVRAEEKIRAVLPDETQA QWLNVTCSTPLLSVERLAYTYNDAPMELRRGLYRTDTHHYYNELS" misc_feature complement(2311016..2311735) /locus_tag="Alide2_2215" /note="Transcriptional regulators [Transcription]; Region: PhnF; COG2188" /db_xref="CDD:32371" misc_feature complement(2311523..2311720) /locus_tag="Alide2_2215" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(2311532..2311543,2311547..2311552, 2311580..2311582,2311589..2311594,2311598..2311612, 2311634..2311639,2311643..2311645,2311712..2311714, 2311718..2311720)) /locus_tag="Alide2_2215" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(2311034..2311444) /locus_tag="Alide2_2215" /note="UTRA domain; Region: UTRA; cl06649" /db_xref="CDD:195338" gene 2311984..2312970 /locus_tag="Alide2_2216" /db_xref="GeneID:10483259" CDS 2311984..2312970 /locus_tag="Alide2_2216" /inference="protein motif:TFAM:TIGR01759" /note="KEGG: dia:Dtpsy_2281 malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD/NADP; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal" /codon_start=1 /transl_table=11 /product="malate dehydrogenase" /protein_id="YP_004388101.1" /db_xref="GI:330824798" /db_xref="GO:0016615" /db_xref="InterPro:IPR001236" /db_xref="InterPro:IPR010945" /db_xref="InterPro:IPR022383" /db_xref="GeneID:10483259" /translation="MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEI PDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERA DLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLR LDHNRAASQIAAKIGCSVGDIEKLCVWGNHSPTMYADYRFATVDGKSVKDAINDHDWN ANVFLPTVGKRGAAIIAARGLSSAASAANAAIDHMRDWALGTNGKWVTMGIPSNGEYG IPKDVMFGYPVTTEGGKYKIVEGLPIDAFSQECINKTLAELQGEQDGVKHLL" misc_feature 2311987..2312967 /locus_tag="Alide2_2216" /note="malate dehydrogenase; Provisional; Region: PRK05442" /db_xref="CDD:180084" misc_feature 2311993..2312961 /locus_tag="Alide2_2216" /note="Chloroplast-like malate dehydrogenases; Region: MDH_choloroplast_like; cd01338" /db_xref="CDD:133423" misc_feature order(2312017..2312019,2312026..2312034,2312110..2312115, 2312257..2312259,2312377..2312379,2312383..2312385, 2312455..2312457,2312551..2312553) /locus_tag="Alide2_2216" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133423" misc_feature order(2312038..2312040,2312050..2312055,2312062..2312064, 2312068..2312070,2312134..2312139,2312146..2312148, 2312155..2312160,2312164..2312172,2312473..2312478, 2312485..2312487,2312497..2312499,2312668..2312670, 2312686..2312694,2312704..2312715,2312722..2312724) /locus_tag="Alide2_2216" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133423" misc_feature order(2312266..2312268,2312284..2312286,2312467..2312469, 2312476..2312478,2312551..2312553,2312704..2312706) /locus_tag="Alide2_2216" /note="malate binding site [chemical binding]; other site" /db_xref="CDD:133423" gene 2312983..2313774 /locus_tag="Alide2_2217" /db_xref="GeneID:10483260" CDS 2312983..2313774 /locus_tag="Alide2_2217" /EC_number="2.1.1.144" /inference="protein motif:PRIAM:2.1.1.144" /note="KEGG: dac:Daci_2430 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 11" /codon_start=1 /transl_table=11 /product="trans-aconitate 2-methyltransferase" /protein_id="YP_004388102.1" /db_xref="GI:330824799" /db_xref="InterPro:IPR013216" /db_xref="GeneID:10483260" /translation="MLDWNPALYLRFAAERTRPAAELLARVPLAQARHVVDLGCGPGN STELLAQRFPEACITGIDNSQAMLAAARQRLPQAGFALADIATWTPNSGDAPDLIYAN AALQWVGAHETLLPRLFALLAPGGVLAVQMPDNLDEPTHRLMREVAGLPRFACHIGDA ARVRTGILPVGSYYDLLAAPEAGAASVDIWHTVYQHPMDSAGAIVQWLQGTGLKPFVE GLEPALRDGFLAEYKRRVDAAYGMRADGRRLLAFPRLFIVAQRQS" misc_feature 2312983..2313771 /locus_tag="Alide2_2217" /note="trans-aconitate 2-methyltransferase; Provisional; Region: PRK01683" /db_xref="CDD:179319" misc_feature 2313085..2313375 /locus_tag="Alide2_2217" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2313094..2313114,2313166..2313171,2313229..2313237, 2313286..2313288) /locus_tag="Alide2_2217" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 2313982..2314626 /locus_tag="Alide2_2218" /db_xref="GeneID:10483261" CDS 2313982..2314626 /locus_tag="Alide2_2218" /inference="similar to AA sequence:KEGG:Dtpsy_2278" /note="KEGG: dia:Dtpsy_2278 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388103.1" /db_xref="GI:330824800" /db_xref="GeneID:10483261" /translation="MKTLIASALLLAAPAWALAQTAPQPAGKPAAQAEAKKSASKAST KPAAAKSAAAKSNKAAGEAHRAVAKASPTSSRTQLHSGAMQVAAGISAAETALTPQEL AIAENVYTGRMACELGAFVEVEADAQSPGRFYVHGKGFRYHMSPVVSVTSAVRLEDQR AGAVWIQIANKSMLMNQKLGQRMADECMSPQQVTVAEAIRKNPPPSLLETPAAK" sig_peptide 2313982..2314041 /locus_tag="Alide2_2218" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.608 at residue 20" gene 2314744..2317335 /locus_tag="Alide2_2219" /db_xref="GeneID:10483262" CDS 2314744..2317335 /locus_tag="Alide2_2219" /inference="protein motif:TFAM:TIGR00117" /note="KEGG: ajs:Ajs_2787 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: Aconitase B, bacterial; PFAM: Aconitase B, N-terminal, bacterial; Aconitase B, HEAT-like, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha" /codon_start=1 /transl_table=11 /product="aconitate hydratase 2" /protein_id="YP_004388104.1" /db_xref="GI:330824801" /db_xref="GO:0003994" /db_xref="GO:0005515" /db_xref="InterPro:IPR001030" /db_xref="InterPro:IPR004406" /db_xref="InterPro:IPR015929" /db_xref="InterPro:IPR015933" /db_xref="GeneID:10483262" /translation="MLQAYRDHVAERAALGIPPLPLDAKQVAELIELIKNPPAGEAEF LLDLLTHRVPPGVDDAAKVKASFLAAVAHGDIQVGLISKARATELLGTMVGGYNVHPL IELLDDAEVAGVAAEALKKTLLMFDYFNDVAARAKAGNAKAQEVMQSWADAEWFTSRP EVEKKITVTVFKVPGETNTDDLSPAPDATTRPDIPLHYLAMLKNTRPDAAFKPEQDGV RGPMQFIEDLKKKGHLVAYVGDVVGTGSSRKSATNSVIWATGQDIPYVPNKRFGGVTL GGKIAPIFFNTQEDSGALPIEVDVSKMEMGDVVDIFPYEGRIEKNGEKIADFQLKSDV LLDEVRAGGRINLIIGRSLTAKARETLGLPASTAFRLPQAPAESKAGFTLAQKMVGRA CGLPEGQGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDLACLGFSADMVMQSFCHTAA YPKPVDVKTHRELPAFISNRGGVALRPGDGVIHSWLNRLLLPDTVGTGGDSHTRFPIG ISFPAGSGLVAFGAATGVMPLDMPESVLVRFKGELQPGVTLRDLVHAIPLYAIKAGLL TVAKAGKKNIFSGKILEIEGLPDLKVEQAFELSDASAERSAAGCTIKLNPEPIKEYLR SNIVLMKNMIADGYQDAKTLQRRIEKVEAWLAKPELLEADKDAEYAAVIEIDMNEIKE PIVCCPNDPDDAKFLSEVAGTKIDEAFIGSCMTNIGHFRAAAKLLGGQRDIPVKLWVA PPTKMDQNELIKEGHYAAFGTAGARTEMPGCSLCMGNQAQVREGATVISTSTRNFPNR LGKNTNVFLGSAELAAIASRLGKLPTREEYLKEMGVIDADKASVYRYMNFDQIEEYAE VAKGVTA" misc_feature 2314744..2317287 /locus_tag="Alide2_2219" /note="bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated; Region: PRK09238" /db_xref="CDD:181718" misc_feature 2315254..2315682 /locus_tag="Alide2_2219" /note="Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change...; Region: AcnB_Swivel; cd01576" /db_xref="CDD:29525" misc_feature 2315479..2315487 /locus_tag="Alide2_2219" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29525" misc_feature 2315893..2317209 /locus_tag="Alide2_2219" /note="Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle; Region: AcnB; cd01581" /db_xref="CDD:153131" misc_feature order(2315992..2315994,2316001..2316003,2316241..2316246, 2317066..2317068,2317120..2317122,2317135..2317137) /locus_tag="Alide2_2219" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153131" misc_feature order(2316247..2316249,2316880..2316882,2317054..2317056, 2317063..2317068,2317117..2317119) /locus_tag="Alide2_2219" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153131" gene 2317441..2317516 /locus_tag="Alide2_R0031" /note="tRNA-Ala2" /db_xref="GeneID:10483263" tRNA 2317441..2317516 /locus_tag="Alide2_R0031" /product="tRNA-Ala" /db_xref="GeneID:10483263" gene complement(2317555..2318448) /locus_tag="Alide2_2220" /db_xref="GeneID:10483264" CDS complement(2317555..2318448) /locus_tag="Alide2_2220" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_3364 transcriptional regulator, LysR family" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004388105.1" /db_xref="GI:330824802" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10483264" /translation="MELRLLHYFATLAEELHFGRAAQRLCISQPPLSVAIKQLEQELQ AQLFERSSKGVRLTAAGEHLLGKARQLLALSHQAAQETRDVAQGTRGHLRLGFVGSSL YRGLPQALAQLQLSHPQVRVDMLEANSAEQILGLQQMRLDVALVHSIQPPEGISSQLI VEEPFVVCLPDHHPLCDGESIDLAELRDDRLILFSNLVSPTYHQRIYEMCLAHGFAPE VRHEVRHWLSVISLVSLGQGVALVPAALERVGLPRLVFRPLLGEHPRSEMLAMWRSAP ANPLVQTLLAHLQQAAQMLDI" misc_feature complement(2317612..2318442) /locus_tag="Alide2_2220" /note="DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986" /db_xref="CDD:182183" misc_feature complement(2318263..2318442) /locus_tag="Alide2_2220" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2317612..2318175) /locus_tag="Alide2_2220" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(2317744..2317749,2317753..2317758, 2317774..2317791,2318071..2318091,2318095..2318097, 2318107..2318109,2318116..2318121,2318125..2318130)) /locus_tag="Alide2_2220" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 2318555..2320261 /locus_tag="Alide2_2221" /db_xref="GeneID:10483265" CDS 2318555..2320261 /locus_tag="Alide2_2221" /inference="protein motif:PFAM:PF00441" /note="PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: ctt:CtCNB1_3363 acyl-CoA dehydrogenase-like protein" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase domain-containing protein" /protein_id="YP_004388106.1" /db_xref="GI:330824803" /db_xref="GO:0003995" /db_xref="InterPro:IPR006090" /db_xref="InterPro:IPR006091" /db_xref="GeneID:10483265" /translation="MSANDQTQMTALAQASAAAHPVPDRGHVNYYTGDGELQSLLALY LPADLHAHLQPYFERMGELAGGAVDDWAQEADRNPPTLEMRSRAGKEQQRIVKHPAYV EMEKVAFQQFGLAAISHREDMLGWKGKMPPIVKYALTYLFVQSEFGLCCPLSMTDSLT RTLKKYGAPELVNKYLPRLLAMDFDSSVQGSMFMTEQAAGSDIANTLTMAYPQEDGSW RLYGEKWFCSNPDAGFSMVLARVDGGPPGMKGISLFLLPRIKDDGSTNHYHIVRLKDK MGTRSMASGEIRMEGAVAYLVGEQGRGFVQIADMVNNSRLSNGMRSAGMMRRAVAEAE FIARERWAFGRRLQDLPLMRVQLDKLRVPAEQARTMVFQTAATLARSDAGDKSAYALL RILTPMIKFRACRDARKVAGDAMEVRGGCGYIEEWADPRLVRDAHLGSIWEGTSNIVA LDVVRAIKREGSLPVLNDYLHGLLADTAAITPAYRQALGDALARAAKLAERAAAEGGE KLARQAASGLYHCTTAIAMAWEAGKTGSSERLRLSQLVLAHRVLPRDPLAEAAVPADW RQ" misc_feature 2318645..2319931 /locus_tag="Alide2_2221" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature 2318813..2319925 /locus_tag="Alide2_2221" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature order(2319026..2319028,2319128..2319130,2319134..2319136, 2319230..2319232,2319236..2319238,2319875..2319883, 2319887..2319889,2319893..2319895) /locus_tag="Alide2_2221" /note="active site" /db_xref="CDD:173838" gene 2320368..2321360 /locus_tag="Alide2_2222" /db_xref="GeneID:10483266" CDS 2320368..2321360 /locus_tag="Alide2_2222" /inference="similar to AA sequence:KEGG:CtCNB1_3361" /note="KEGG: ctt:CtCNB1_3361 AccB" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388107.1" /db_xref="GI:330824804" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10483266" /translation="MTMTKRSLLGLIAGAAMLAALPVQAQDKFPDRPIMFVVPFPPGG PTDAMARILATELTRELGQAVVVENRAGAGGNIGADFVARANPDGYTIMFGTSGPLAI NHSLYKGLKYDPRISFEPVIYVGYLPNVLVVRPGLGVNSVQELIAKEKAKPGTLNYAS SGNGASSHLAGVLFNGMAGTQLVHVPYKGTGPALNDLLAGQVDMTFTDILTAMPYIKS DKVKALGVATAKRSSAMPDIPTIAEQGGKELKGYDVSVFFGVVAPKGTPADRVKLLNQ AFTRALATDKVRQTFAAQGLEASPDHSPAYLGRFIKAEVDKWAKVVQQSGVQLD" sig_peptide 2320368..2320445 /locus_tag="Alide2_2222" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 26" misc_feature 2320431..2321351 /locus_tag="Alide2_2222" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 2320512..2321345 /locus_tag="Alide2_2222" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2321367..2322527 /locus_tag="Alide2_2223" /db_xref="GeneID:10483267" CDS 2321367..2322527 /locus_tag="Alide2_2223" /EC_number="2.8.3.16" /inference="protein motif:PRIAM:2.8.3.16" /note="KEGG: ctt:CtCNB1_3358 L-carnitine dehydratase/bile acid-inducible; PFAM: CoA-transferase family III" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase" /protein_id="YP_004388108.1" /db_xref="GI:330824805" /db_xref="InterPro:IPR003673" /db_xref="GeneID:10483267" /translation="MNFMTQGQDPRQAASKAGALAGIKVLDLSRILGGPLCGQILGDH GADVLKVEPPQGDDTRAWGPPFNKDGVASYYFGLNRNKRIQFLDLSAPDGQQRVRELM ARADVVVENFKAGTMEKWGIGYEQVRHEFPHLVWCRVTGFGTDGPLGALPGYDAAIQA MAGLMSINGDAQGDPLRVGLPVVDMVTGMNAAIGVLLALHERARSGQGQLVDAALYDS GLSLLHPHAANWFMSGKVPGRTGNAHPNIYPYDVVHTGGAPIFLAVGNDRQFALLCDY IGQGALAQDERFATAGQRSVNRHELKPLLTQAFADRDGQELADALMAIGVPAAPVLDV AQALRHPHTAHREMVVAMDGGYQGLGAPVKLSRTPASYRLAPLSEGQDFLHD" misc_feature 2321409..2322512 /locus_tag="Alide2_2223" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene complement(2322538..2323887) /locus_tag="Alide2_2224" /db_xref="GeneID:10483268" CDS complement(2322538..2323887) /locus_tag="Alide2_2224" /EC_number="1.8.1.7" /inference="protein motif:TFAM:TIGR01421" /note="TIGRFAM: Glutathione reductase, eukaryote/bacterial; KEGG: dac:Daci_2356 glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation" /codon_start=1 /transl_table=11 /product="glutathione-disulfide reductase" /protein_id="YP_004388109.1" /db_xref="GI:330824806" /db_xref="GO:0004362" /db_xref="GO:0050660" /db_xref="GO:0050661" /db_xref="InterPro:IPR004099" /db_xref="InterPro:IPR006322" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10483268" /translation="MKHYDYIVIGGGSGGIASANRAAMHGRRCALIEAGELGGTCVNV GCVPKKVMWHAAQIADAIRQYGPDYGFDATINRFDWDTLVRNRGAYIGRIHASYAVGL EKNKVDVIRGFARFVDARTIEVGGERLTAGHILIATGGHPVRPDIPGAEHGLDSDGFF ALPALPRRTAVVGAGYIAVELAGVLNALGSQTHLFVRKHAPLRNFDPLLSDTLVEAMR AEGPQLHTHASPTALRKNADGSLTLELGNGERHTTDCVIWAIGRAPHTAGLRPEAAGV MLDERGYVRVDKYQDTNVPGIHAVGDVTGQVELTPVAVAAGRRLAERLFNGRPDAHLD YGNIPSVVFSHPPIGTVGLTEPEAREQYGDDAVRVYQSAFTAMYSAVTRHRQSARMKL VCVGPDERIVGIHGIGHGMDEILQGFAVALKMGATKRDFDDTVAIHPTAAEEFVTMR" misc_feature complement(2322541..2323887) /locus_tag="Alide2_2224" /note="glutathione reductase; Validated; Region: PRK06116" /db_xref="CDD:180410" misc_feature complement(2323144..2323386) /locus_tag="Alide2_2224" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(2322541..2322876) /locus_tag="Alide2_2224" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene 2324055..2324522 /locus_tag="Alide2_2225" /db_xref="GeneID:10483269" CDS 2324055..2324522 /locus_tag="Alide2_2225" /EC_number="1.2.99.2" /inference="protein motif:PRIAM:1.2.99.2" /note="KEGG: vei:Veis_4544 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin" /codon_start=1 /transl_table=11 /product="carbon-monoxide dehydrogenase" /protein_id="YP_004388110.1" /db_xref="GI:330824807" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR002888" /db_xref="GeneID:10483269" /translation="MQIQLKVNGRAITADVPPNTLLVQFLREHLRLTGTHQGCDTAQC GACTVIADGRSIKACNALAVQMQGADITTIEGLAAADGTLHPMQAAFKECHGLQCGFC TPGMVMSAVDLLAHNPRASEAEIREQLEGNICRCTGYQNIVHAVQTAQKALAA" misc_feature 2324055..2324519 /locus_tag="Alide2_2225" /note="Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]; Region: CoxS; COG2080" /db_xref="CDD:32263" misc_feature 2324271..2324495 /locus_tag="Alide2_2225" /note="[2Fe-2S] binding domain; Region: Fer2_2; pfam01799" /db_xref="CDD:190116" gene 2324556..2326928 /locus_tag="Alide2_2226" /db_xref="GeneID:10483270" CDS 2324556..2326928 /locus_tag="Alide2_2226" /EC_number="1.2.99.2" /inference="protein motif:PRIAM:1.2.99.2" /note="KEGG: vap:Vapar_1594 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead" /codon_start=1 /transl_table=11 /product="carbon-monoxide dehydrogenase" /protein_id="YP_004388111.1" /db_xref="GI:330824808" /db_xref="InterPro:IPR000674" /db_xref="InterPro:IPR008274" /db_xref="GeneID:10483270" /translation="MGATEFAKLPHIGESVKRKEDLRFLTGAGNYTDDIVQPGQKYAV FVRSPYAHANIKSVDTAAAAAMPGVAAVFTGKDIEGKVNGLPCGWLISNPDGSPMKEP PHPVLASTKVRYVGDHVAMVVADTLEQAKNAAEAVAVDYEELAPVIDMRTASQGPALH AEAPDNHCYKWTLGDKAAVDAAFAGAAHVTAIDLTNNRLIPNAMEPRAANASYNRATD EYQLYVANQNPHVERLLMTAFVLGLPEHKVRVIAPDVGGGFGSKIFLYAEDVALTWAA RQLNCPIKWTAERSESFVSDAHGRDHISHAEMAMDKDGKFLAMRVHTHANLGAYLSTF ASAIPTILYGTLLAGQYATPQIYVEVDGWFTSTAPVDAYRGAGRPEAAYLVERLVTRC AWELGLPQDEIRKRNFIASFPYQTPVALQYDTGDFHACMNESQKLADVAGFEARRKAS EARGLRRGMGYSCYIEACGLAPSNIAGALGARAGLFEAGEVRVHPTGSVTVFTGSHSH GQGHETTFAQLVAARLGLDPGQVDIVHGDTGRVPFGMGTYGSRSLSVGGTAIMKALDK IEAKAKKIAAHLMEASDADIEFAGGEFTVKGTDKKVPFAQVALTAYVPHNYPLDKLEP GLNETAFYDPTNFTYPAGTYICEVEVDPQTGVVRVDRFTAVDDFGVIVNPMIVEGQVH GGVVQGMGQALMEHGVYDPDSGQLLTGSYMDYTMPRAADFPEFKLGHVCTPCTHNPIG SKGCGEAGAIGSPPAVINAVLDALRPLGVTDIDMPATPHRVWQAIQSAAA" misc_feature 2324613..2326907 /locus_tag="Alide2_2226" /note="carbon-monoxide dehydrogenase, large subunit; Region: CO_dehy_Mo_lg; TIGR02416" /db_xref="CDD:131469" misc_feature 2324631..2324987 /locus_tag="Alide2_2226" /note="Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; pfam01315" /db_xref="CDD:144787" misc_feature 2325156..2326724 /locus_tag="Alide2_2226" /note="Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738" /db_xref="CDD:145733" gene 2326942..2327733 /locus_tag="Alide2_2227" /db_xref="GeneID:10483271" CDS 2326942..2327733 /locus_tag="Alide2_2227" /EC_number="1.2.99.2" /inference="protein motif:PRIAM:1.2.99.2" /note="KEGG: pol:Bpro_0576 molybdopterin dehydrogenase, FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal" /codon_start=1 /transl_table=11 /product="carbon-monoxide dehydrogenase" /protein_id="YP_004388112.1" /db_xref="GI:330824809" /db_xref="InterPro:IPR002346" /db_xref="InterPro:IPR005107" /db_xref="GeneID:10483271" /translation="MYAFTYERPTSEADALRLAQAGARPLAGGQTLLASMKLRLAAPE QIVDLGAVPELKGIRRDGDALVIGAMTRHCDVAESAEARAAIPALAALAGGIGDKQVR ARGTIGGSVANNDPAADYPAALLALGATVHTTARAIAADDFFQGLFATALEEGELITA VRFPIAAKAAYVKFAQPASLFALIGVFVAQTAQGVRVAVTGGGNGVFRHQAMEKALDA RFAPEAIAGVPTEEAGMSSDLHASSAYRAHLVGVMAQRAVARALA" misc_feature 2326942..2327730 /locus_tag="Alide2_2227" /note="Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]; Region: CoxM; COG1319" /db_xref="CDD:31510" gene 2327863..2328777 /locus_tag="Alide2_2228" /db_xref="GeneID:10483272" CDS 2327863..2328777 /locus_tag="Alide2_2228" /inference="protein motif:PFAM:PF07728" /note="KEGG: dac:Daci_2251 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="ATPase" /protein_id="YP_004388113.1" /db_xref="GI:330824810" /db_xref="GO:0005524" /db_xref="GO:0016887" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011704" /db_xref="GeneID:10483272" /translation="MNASTPPCVCNSIDELAAALQAVGYFADRRLATAVFLALKLQRP LLLEGEPGVGKTELAKALAQALGRQLLRLQCFDGMEQREALYEWNYAAQLLHLRANEG TASASALEQEVYQPRYLVRRPLLQALEALEPGALLLIDEVDRADEPFEAFLLEYLGEY QVSIPELGTIRAAVPPVTILTSNRTRELNDAVKRRCLYHWLDYPGRERELAIVHALVP QAGQRLAAQVAAFVQQLRSSPYADRFQRAPGIAETVEWARALVALDTLVLDPEVVADT AGILFKQRDDVAALDAALARDVLQAAQD" misc_feature 2327932..>2328654 /locus_tag="Alide2_2228" /note="MoxR-like ATPases [General function prediction only]; Region: COG0714" /db_xref="CDD:31058" gene 2328780..2330021 /locus_tag="Alide2_2229" /db_xref="GeneID:10483273" CDS 2328780..2330021 /locus_tag="Alide2_2229" /inference="protein motif:PFAM:PF05762" /note="KEGG: vei:Veis_4536 VWA containing CoxE family protein; PFAM: vWA containing CoxE-like; SMART: von Willebrand factor, type A" /codon_start=1 /transl_table=11 /product="VWA containing CoxE family protein" /protein_id="YP_004388114.1" /db_xref="GI:330824811" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR008912" /db_xref="GeneID:10483273" /translation="MTISTSPATPRRASQLGDARSGKLAANLVAFGRALRRAGVPVDG ARIALAQQAIEAVGVARREDMAAALEAVLLSRAQDRAVFAELFDAFFRDPELAHKLLA QMLPRAEGHAEPPRQRPRVREALAPPKPQAQQAAGPDQAVDLDAAMTASAAQRLRHAD FNLLSASEYRLVERLVRDIPLPLPSVASRRTRGGARGARVHWARTLRRAARSGGDLVS LARLRRRRQPLPLLLLVDVSGSMERYARLLLAFLHAATARTRLDGANLRVRRDVFAFG TALTDLTPAFAQADTDAMLADAGRAIHDFAGGTRLGDSLAQLRQRHGRRLVGRRTLVL IVSDGLDTGEPGALAEELAWLGRRCRRMLWLNPLLRFDGYAPSARGAAQLHRACDGML AVHNVSKLQELAGAIAALLER" misc_feature 2328834..2330012 /locus_tag="Alide2_2229" /note="Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]; Region: CoxE; COG3552" /db_xref="CDD:33354" misc_feature 2329383..2329967 /locus_tag="Alide2_2229" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:197401" gene 2330035..2330586 /locus_tag="Alide2_2230" /db_xref="GeneID:10483274" CDS 2330035..2330586 /locus_tag="Alide2_2230" /inference="protein motif:PFAM:PF06240" /note="PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G" /codon_start=1 /transl_table=11 /product="carbon monoxide dehydrogenase subunit G" /protein_id="YP_004388115.1" /db_xref="GI:330824812" /db_xref="InterPro:IPR010419" /db_xref="GeneID:10483274" /translation="MDMQGARQLAIGQQQAWDALNDPGVLKICIPGCDSIEATGEGAY ALVNAIKVGPVAAKFKGAIHLADVNAPHGYTLNFEGNGGVAGFGKGSARVTLTPQDEG CELAYTVHATVGGKIAQVGQRLIDGVARSMAESFFKRFDEEMQRRHGPPPEEAAEAGE KPGALKKMWSRLKGGDKPAADGD" misc_feature 2330035..2330466 /locus_tag="Alide2_2230" /note="Carbon monoxide dehydrogenase subunit G (CoxG); Region: CoxG; cd05018" /db_xref="CDD:176853" misc_feature order(2330041..2330043,2330047..2330049,2330053..2330055, 2330080..2330088,2330092..2330097,2330110..2330112, 2330122..2330124,2330140..2330142,2330158..2330160, 2330164..2330166,2330170..2330172,2330176..2330178, 2330182..2330184,2330197..2330199,2330209..2330211, 2330221..2330229,2330236..2330238,2330254..2330256, 2330260..2330262,2330266..2330268,2330302..2330310, 2330314..2330316,2330320..2330322,2330347..2330349, 2330353..2330355,2330359..2330361,2330365..2330367, 2330407..2330421,2330425..2330433,2330437..2330445, 2330452..2330454) /locus_tag="Alide2_2230" /note="putative hydrophobic ligand binding site [chemical binding]; other site" /db_xref="CDD:176853" gene 2330596..2331636 /locus_tag="Alide2_2231" /db_xref="GeneID:10483275" CDS 2330596..2331636 /locus_tag="Alide2_2231" /inference="protein motif:PFAM:PF02625" /note="PFAM: XdhC- CoxI; KEGG: pol:Bpro_0572 hypothetical protein" /codon_start=1 /transl_table=11 /product="XshC-Cox1 family protein" /protein_id="YP_004388116.1" /db_xref="GI:330824813" /db_xref="InterPro:IPR003777" /db_xref="GeneID:10483275" /translation="MENIDVTVLRALRDWRQAGHGAILVTVVRTWGSSPRPVGSIMAL RADGAVTGSVSGGCIEDDMIARYTQPGVADALPHAGPPQFAKYGVTADEAHRFGLPCG GTLELLIEFDPDAASLAALVDRLDAGQLVQRSVRLADGGVALTPAQAPAELVLDAQQL VNTFGPEYRMLIIGAGQMSEYLATMALFCGFAVTVCDPREEYRSGFAVPGARLLATMP DDTVAAFAPDARSCVVALTHDPKLDDLALLQALETPAFYIGAIGSRRNNQARRQRMIE HLGQTGESLARLRGPVGIYIGSKTPPEIAVSIMAEVLAVKNGVALPPGVDVAHVKDSQ GLAGPGSACLAD" misc_feature 2330617..2331582 /locus_tag="Alide2_2231" /note="Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]; Region: XdhC; COG1975" /db_xref="CDD:32158" misc_feature 2330659..2330859 /locus_tag="Alide2_2231" /note="XdhC and CoxI family; Region: XdhC_CoxI; pfam02625" /db_xref="CDD:190370" gene 2331636..2332283 /locus_tag="Alide2_2232" /db_xref="GeneID:10483276" CDS 2331636..2332283 /locus_tag="Alide2_2232" /inference="protein motif:PFAM:PF01128" /note="PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2C-methyl-D-erythritol synthase" /protein_id="YP_004388117.1" /db_xref="GI:330824814" /db_xref="GO:0003824" /db_xref="InterPro:IPR001228" /db_xref="GeneID:10483276" /translation="MRESQQRIGAVVMAAGAGRRMGHVPKGLLRRGGEPLLLRQIRLL AEAGVDEAVVVLGHHAERLEPVLRQAGSAPRGMALRWVANPAPDEGPGASLRCGLAAL PDGLTTLLVMLADQPLLELQDVQAMLAAWRARAAGVELAVPQHAGQPGHPIVFGPLVR GQVLRAQGGAGVREWRRAHGDQVLLVPLSHARCTTDVDTPDDVQRLGRDFGVWLE" misc_feature 2331756..2332247 /locus_tag="Alide2_2232" /note="GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function; Region: GT_2_like_f; cd04182" /db_xref="CDD:133025" misc_feature order(2331978..2331980,2332221..2332223,2332227..2332229) /locus_tag="Alide2_2232" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:133025" gene complement(2332291..2333166) /locus_tag="Alide2_2233" /db_xref="GeneID:10483277" CDS complement(2332291..2333166) /locus_tag="Alide2_2233" /inference="similar to AA sequence:KEGG:Dtpsy_2274" /note="KEGG: dia:Dtpsy_2274 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388118.1" /db_xref="GI:330824815" /db_xref="GeneID:10483277" /translation="MNPEDIVVLPELKAYIDPLTPDEHDALERSILEEGCRDALVLWG NVLVDGHNRYGICRKHGLPFKTVQNTRFQNMEDVHLWMIDQHLGRRSVSEFQRGVLAL RKREIIAERRAAAAAAVVAAKAEAGQSPEAQAPWEGDTDPVVAKALASVPKVPEDALD TREALARAARLTAAQVKMIEAIHQNAAPEVVAAVKSGELSLNAAAVVATLPVDEQKSV AAGGAQELKQAARRVRDAKKKPKAEAPAATAQEGGGPAASPDELRQRVAELEAENERL RQQVKALQDLLAEQG" gene complement(2333269..2335293) /locus_tag="Alide2_2234" /db_xref="GeneID:10483278" CDS complement(2333269..2335293) /locus_tag="Alide2_2234" /inference="similar to AA sequence:KEGG:GOX2135" /note="KEGG: gox:GOX2135 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388119.1" /db_xref="GI:330824816" /db_xref="GeneID:10483278" /translation="MERISNNYQDASGKPYIRTFAIVLAIFGVLIFLARAKASLNMFE FGDETEKLVAAQMIKAGMRLYHDIFAHHGPVAYIISHAYVNLVDPTNFSHIRWFMVGL ALLASLSIYTSPIFKNTTSRLIATGAFLVLLSSIWAVQGIHMMLYHQIGGFLFIIPIT QVFLPLLYGHKPTAFGFASAGFSCAIICFTAYAFGPSVILISTSSIILIITNRHYTEI FKQIIPVFWGALFATSIVAIWIALNADFEGYFIYHFYFNQAVYSKFIEFNLGAIKNLF FIDFSRPAIVHTFILFGLIASLFFLAKTEKPQIFKKNNKLTAFSVVLFFLSLIMLNPR GSTGFHDAGLDVAGLAVFSVLGSYYIDEINGKLSTKKIALIILGILCTILLFELASRK AISSPYGVRKSDFKSYSNTRNATADYGLITELVENDKDLLALIFRPSIYIDTGKSPTS GHYYYLPWQAAYNKNPVDGYKIDICKDLELHRPSVIWFDNWKVWERYSIQDYEPCVME IINSSYRAITKGSYFYIKSDRLMQDHAALNVDEGKISATRPLDESTPIALKIFSPKND DNGTLKRIGIKFETHTRDNPGDAQLELSASDGKVFRQNFPLSELKNNHYKYFDVPNDI GANFASGKILSGSGSGISTLEIQSTDGNSLTCINYIYSDNKIAVTPGCPQ" gene complement(2335308..2336639) /locus_tag="Alide2_2235" /db_xref="GeneID:10483279" CDS complement(2335308..2336639) /locus_tag="Alide2_2235" /inference="protein motif:PFAM:PF01593" /note="PFAM: Amine oxidase; KEGG: xal:XALc_2703 protoporphyrinogen oxidase protein" /codon_start=1 /transl_table=11 /product="amine oxidase" /protein_id="YP_004388120.1" /db_xref="GI:330824817" /db_xref="InterPro:IPR002937" /db_xref="GeneID:10483279" /translation="MANNFQQTEITIIGGGFTGLTAAYELVKSGIKVTVLESEPEIGG LAAAFDVGGEKLDRFYHHWFTNDLEVMTLIEELGLQNKVEINPTNTGVYYANNFFKLS TPWDLLNFTPLAFLDRIRLGLLALRARRVKNWKNLEAKTAHEWLKSLGGENVYRVVWQ PLLKGKFGPYAEDVSAVWFWNKLKLRGGSRGKGGEERLAYFKGGFVALAEALAQRIRD LGGIIAVNTPVSSVTKEGGDWIVKTTDGTISSKRIIFTTALPIISEMIKSWAPSEYLD SLNRIQYIGNVCLVLELDRPLSETYWLNVNDPSFPFVGVIEHTNFERPETYGGRHIVY LSKYLPHTDRLYSMTADEFLDYAIPFIQKMFPRFDRTWIQKHHLWRARWSQPVVEKYY STLIPDEDGPAEGLHICTMAQIYPEDRGTNYAIREGRRIGRKISRSPSVVN" misc_feature complement(2335329..2336576) /locus_tag="Alide2_2235" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(2335335..2336576) /locus_tag="Alide2_2235" /note="Protoporphyrinogen oxidase [Coenzyme metabolism]; Region: HemY; COG1232" /db_xref="CDD:31425" gene complement(2336645..2337610) /locus_tag="Alide2_2236" /db_xref="GeneID:10483280" CDS complement(2336645..2337610) /locus_tag="Alide2_2236" /inference="protein motif:PFAM:PF03706" /note="KEGG: reh:H16_A2892 hypothetical protein; manually curated; PFAM: Lysylphosphatidylglycerol synthetase/UPF0104" /codon_start=1 /transl_table=11 /product="Lysylphosphatidylglycerol synthetase/UPF0104" /protein_id="YP_004388121.1" /db_xref="GI:330824818" /db_xref="InterPro:IPR005242" /db_xref="InterPro:IPR022791" /db_xref="GeneID:10483280" /translation="MNRIFRIIIGPGLAIFFIWLALKDINTRELIESIHQTEISYIVI AIFVFFAGYSCRIERWRLMLINENTKLNWKECAGPLMASVAANNVLPFRAGDIFRAIK FNKQLRISAATSITTLFVERLLDLLMVVLFLGIALAYFGMDSSRLIGIGGSALLSGGA IILFLLIFPSIFKPFAHWLSKVISKAFPKFGQKLDAEFTKIFTALEHTSKGSTMIKLI CWSFAAWLSEGLVFWFIALSIPTISYDLAAWLALPVGTLATIIPSTPGYVGTFDYFTS QAMIALGNREESSIAFAFIVHAVLWLPPTVVGGLYFLINPMKKTK" misc_feature complement(2336648..2337601) /locus_tag="Alide2_2236" /note="Predicted integral membrane protein [Function unknown]; Region: COG0392" /db_xref="CDD:30741" misc_feature complement(2336684..2337571) /locus_tag="Alide2_2236" /note="Uncharacterised protein family (UPF0104); Region: UPF0104; cl04219" /db_xref="CDD:194802" gene complement(2337607..2338620) /locus_tag="Alide2_2237" /db_xref="GeneID:10483281" CDS complement(2337607..2338620) /locus_tag="Alide2_2237" /inference="protein motif:PFAM:PF00535" /note="KEGG: cph:Cpha266_0350 glycosyl transferase family protein; manually curated; PFAM: Glycosyl transferase, family 2" /codon_start=1 /transl_table=11 /product="family 2 glycosyl transferase" /protein_id="YP_004388122.1" /db_xref="GI:330824819" /db_xref="InterPro:IPR001173" /db_xref="GeneID:10483281" /translation="MTAIPKAEKKQELISIIVPCYNEEEVISETLKRLKIFCSELTEL DVELIFVDDGSRDRTRELLRNYASEDTRIKVICFARNFGHQIAVTAGIDAAVGNAVVL IDADLQDPPEVVHEMIAKWKEGYDVVYGTRTERPGESAFKLATARGFYRLLNKLSDVP IPLDTGDFRLMSRAVVDTLRAMPERDRFVRGMVSWVGFKQVALPYKRAERFAGESKYP LRKMLRFATDGILSFSTKPLQLSVALGMASAALSLIGIAYALFLRIFTNTWVEGWTAL MIAVLFIGGVQLVSIGILGEYVGRIYSEIKKRPLYVVQEYLGFSNEGPKMSRSPVVNI TNT" misc_feature complement(2337667..2338581) /locus_tag="Alide2_2237" /note="undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714" /db_xref="CDD:182669" misc_feature complement(2338027..2338575) /locus_tag="Alide2_2237" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature complement(order(2338303..2338305,2338558..2338560, 2338564..2338566)) /locus_tag="Alide2_2237" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133030" misc_feature complement(order(2338303..2338308,2338462..2338464)) /locus_tag="Alide2_2237" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature complement(2338303..2338311) /locus_tag="Alide2_2237" /note="DXD motif; other site" /db_xref="CDD:133030" gene complement(2338719..2340092) /locus_tag="Alide2_2238" /db_xref="GeneID:10483282" CDS complement(2338719..2340092) /locus_tag="Alide2_2238" /inference="protein motif:PFAM:PF01136" /note="PFAM: Peptidase U32; KEGG: dia:Dtpsy_2273 peptidase U32" /codon_start=1 /transl_table=11 /product="peptidase U32" /protein_id="YP_004388123.1" /db_xref="GI:330824820" /db_xref="GO:0008233" /db_xref="InterPro:IPR001539" /db_xref="GeneID:10483282" /translation="MTPKAPELLLPAGSLDKMRAAYDFGADAVYAGQPRYSLRARNNE FRLEQIAQGIQEAHARGKKFFVTSNLIAHNDKVRTYLRDIEPVIDCKPDALIMADPGL IMMVKEKWPETEVHLSVQANTTNWATVKFWQKAGVSRIILSRELSLDEIEKIRQECPD MEIEVFVHGALCIAYSGRCLLSGYFNHRDPNQGTCTNACRWEYKTHDAAVDPNTGEAL ATGMDKGFNFEQAREAADAQFSSTCGSGQRHPKADQVYLIEEIGRPGELMPIMEDEHG TYIMNSKDLRAVEHVERLVKIGVDSLKIEGRTKSLYYVARTAQVYRRAIDDAVAGRPF NPHLITELEGLANRGYTGGLLERRPANDYQNYETGNSVLQRAHFVGEVRGWADGLAEV ETKNRFQVGDMLEIIHPQGNRQVRLEKMFNLDGEPVQVAQGSPVRVCIPLDGPVEGAL IARLLQI" misc_feature complement(2338725..2340086) /locus_tag="Alide2_2238" /note="putative protease; Provisional; Region: PRK15452" /db_xref="CDD:185349" misc_feature complement(2339016..2339870) /locus_tag="Alide2_2238" /note="Peptidase family U32; Region: Peptidase_U32; cl03113" /db_xref="CDD:194534" gene complement(2340141..2341511) /locus_tag="Alide2_2239" /db_xref="GeneID:10483283" CDS complement(2340141..2341511) /locus_tag="Alide2_2239" /inference="similar to AA sequence:KEGG:Daci_1894" /note="KEGG: dac:Daci_1894 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388124.1" /db_xref="GI:330824821" /db_xref="GeneID:10483283" /translation="MRHASRLGGLSLAALLGVTGCGTGPAALRGPAASAEVAPRATAC PAALPTGTTCLSGRDSQGAYYLIARPADWNGVLVLHAHGGPLLSAPSPQRAVEDLERW AIMVRAGYAWAGSTFRQGGVAVRAAAEDTERLRGIFRSHVGQPRRTLLHGQSWGAGVA AKAAEMFTAQTVGEQPYDGVLLTSGVLGGGTHAYDFRLDLRVVYQYLCGNHPRLTEPQ YALNLGLPAGAHMTAADVAGRVNECLALDRPAAGRSTQQRAKARTISQVIRIPESSIT SHLAWGTLHFQDISSRRTGGRSPFGNEGAVYTGSADDAALNAGVLRYRADPAAYRQFA DDTDPTGRIPVPVLSTKWISDPTAFVELDARFRSVMRQGGSGRRLVQTFTTRGTHSYI SDATYATLASALLRWVETGAKPTPAGIAAACPAFEARLGAGCSFDPAYQPAPLQTRVP PRQRPE" sig_peptide complement(2341407..2341511) /locus_tag="Alide2_2239" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.802) with cleavage site probability 0.481 at residue 35" gene complement(2341539..2342420) /locus_tag="Alide2_2240" /db_xref="GeneID:10483284" CDS complement(2341539..2342420) /locus_tag="Alide2_2240" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004388125.1" /db_xref="GI:330824822" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10483284" /translation="MPFDLTDLRLFVHVHEAGSITGGAARSHLALPSASERIRGMESA LGAALLVRGQRGVRLTAAGHTLLHHARLVLRQMEHLRGDLADHGAGLAGHVHLLCNTS ALGEHLPPLLPAFLAAHPRVSVELEERTSQDIADTVRAGLADLGVVSDATDLQGLSTL PFRPDPLALAVPVGHALAAQRCVALAQLQDQDFVGLPHGSALQALVSRHLGPRARYRA RLQHLEAVCRLVGLGAGVAVVPLAAARRHARALRIRPVPLSDAWARRSLVLCLRDAHA LPPFTQQLVHHLRAEAH" misc_feature complement(2342229..2342408) /locus_tag="Alide2_2240" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2341557..2342126) /locus_tag="Alide2_2240" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(2341725..2341730,2341734..2341739, 2341755..2341772,2342037..2342057,2342061..2342063, 2342073..2342075,2342082..2342087,2342091..2342096)) /locus_tag="Alide2_2240" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 2342519..2344786 /locus_tag="Alide2_2241" /pseudo /db_xref="GeneID:10483285" gene complement(2343034..2344389) /locus_tag="Alide2_2242" /db_xref="GeneID:10483286" CDS complement(2343034..2344389) /locus_tag="Alide2_2242" /inference="protein motif:PFAM:PF01609" /note="PFAM: Transposase, IS4-like; KEGG: pna:Pnap_4647 transposase, IS4 family protein" /codon_start=1 /transl_table=11 /product="transposase IS4 family protein" /protein_id="YP_004388126.1" /db_xref="GI:330824823" /db_xref="GO:0003677" /db_xref="GO:0004803" /db_xref="InterPro:IPR002559" /db_xref="GeneID:10483286" /translation="MGPKPSQPQTAELFRPRLDEQINMKHPLVKLAALIDWAEIERTF AVSFTSGRGRPALAPRLVAGLLYLQHTFDASDEAVVNTWVENPYWQFFCGETYLQTEL PIDPSSLTRWRKRVGEEGVETLLAASIDAARRGGVIHKASTQQVIVDTTVMPKAIAHP TDSRLLDKSRQHLVKAAEDNGLRLRQNYNRVAPRLAAQIGRYAHAKQFKRMRKAVRTL RTRVGRVHREVQRQLHVLPEAAKAKIQDLLQRTGRILTQRTKDKNKLYALHAPEVECI SKGKARTPYEFGVKVSIATTLKEGLVVGMRSMPGNPYDGHTLGETLEQVGILTGTDRP PATAIVDKAYRGVEIEGVRILRSGQRRGVTRTLKAMIKRRSAIEPAIGHMKMDGRLGR NPLKGALGDALHAVMCGAGHNLRMILAALRLYCARFGLSMQAVIAALLAAPVENRPAC G" misc_feature complement(2344003..2344233) /locus_tag="Alide2_2242" /note="Transposase domain (DUF772); Region: DUF772; cl12084" /db_xref="CDD:196330" gene complement(2344806..2345339) /locus_tag="Alide2_2243" /db_xref="GeneID:10483287" CDS complement(2344806..2345339) /locus_tag="Alide2_2243" /inference="protein motif:PFAM:PF00072" /note="KEGG: dia:Dtpsy_2271 two component transcriptional regulator, fis family; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain" /codon_start=1 /transl_table=11 /product="two component Fis family transcriptional regulator" /protein_id="YP_004388127.1" /db_xref="GI:330824824" /db_xref="GO:0000156" /db_xref="GO:0003700" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR002197" /db_xref="GeneID:10483287" /translation="MDAERLLLLVEDDEAFARTLARSFERRGYRVLRADSLARVRELL GAHSPGYAVVDLKLKGEATGLACVRELHAHDEGMLIVVLTGYASIATAVEAVKLGACH YLAKPSNTDDIEAAFGLTEGNADVELTNRCSSIKTLEWERIHEVLAETGFNITEAARR LGMHRRTLARKLDKRRV" misc_feature complement(2344809..2345339) /locus_tag="Alide2_2243" /note="Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]; Region: COG4567" /db_xref="CDD:34205" misc_feature complement(2344992..2345318) /locus_tag="Alide2_2243" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2345019..2345024,2345031..2345033, 2345088..2345090,2345148..2345150,2345175..2345177, 2345304..2345309)) /locus_tag="Alide2_2243" /note="active site" /db_xref="CDD:29071" misc_feature complement(2345175..2345177) /locus_tag="Alide2_2243" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2345148..2345153,2345157..2345159, 2345163..2345168)) /locus_tag="Alide2_2243" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2345016..2345024) /locus_tag="Alide2_2243" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2344818..2344940) /locus_tag="Alide2_2243" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(2345340..2346656) /locus_tag="Alide2_2244" /db_xref="GeneID:10483288" CDS complement(2345340..2346656) /locus_tag="Alide2_2244" /inference="protein motif:PFAM:PF02518" /note="KEGG: ajs:Ajs_2780 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain" /codon_start=1 /transl_table=11 /product="integral membrane sensor signal transduction histidine kinase" /protein_id="YP_004388128.1" /db_xref="GI:330824825" /db_xref="GO:0000155" /db_xref="GO:0005524" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="GeneID:10483288" /translation="MTPGTPATLKARSADAAAGLKNLQQLIQLRWIAVVGQIFTIEVA HYGLQLPLPLREMLMVVGCLALYNVTSLLRWRTGRGVRNVELFLALLVDVAVLTVQLY LSGGTGNPFALLFLLQIALGAALLRSGYIWAMVCITALCLALLAHYRVPLQLSPDFSR GLASPYVLGLLVCFMLNAALVVIFISRINHNLRERDARLAAARQRAAEQQHVLRMGLL ASGAAHELGTPLSTMAVILGDWRRDPALADNAALQQDVAEMQVQLQRCKTIVSGILLS AGEARAEASAQTTVRQFLDALAREWRATRAVDRFDYDNRFGQDGPMVSDVTLQQMVFN VLDNARDASPHWVGLVAEREQDMLRIAISDDGPGFAPTMLARLGAPYQSSKGQPGGGL GLFLSLNVARTLGGSVHAENLPGGGARVTITLPLAAIALDTGHETF" misc_feature complement(2345826..2346017) /locus_tag="Alide2_2244" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2345838..2345840,2345850..2345852, 2345859..2345861,2345871..2345873,2345880..2345882, 2345892..2345894,2345949..2345951,2345958..2345960, 2345970..2345972,2345979..2345981,2345991..2345993, 2346003..2346005)) /locus_tag="Alide2_2244" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2345985..2345987) /locus_tag="Alide2_2244" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2345385..2345675) /locus_tag="Alide2_2244" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2345397..2345399,2345403..2345408, 2345421..2345423,2345427..2345429,2345475..2345486, 2345550..2345555,2345559..2345561,2345565..2345567, 2345571..2345573,2345634..2345636,2345643..2345645, 2345655..2345657)) /locus_tag="Alide2_2244" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2345643..2345645) /locus_tag="Alide2_2244" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2345478..2345480,2345484..2345486, 2345553..2345555,2345559..2345561)) /locus_tag="Alide2_2244" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2346653..2347462) /locus_tag="Alide2_2245" /db_xref="GeneID:10483289" CDS complement(2346653..2347462) /locus_tag="Alide2_2245" /inference="protein motif:PFAM:PF02104" /note="PFAM: Surfeit locus 1; KEGG: ajs:Ajs_2779 surfeit locus 1 family protein" /codon_start=1 /transl_table=11 /product="Surfeit locus 1 family protein" /protein_id="YP_004388129.1" /db_xref="GI:330824826" /db_xref="InterPro:IPR002994" /db_xref="GeneID:10483289" /translation="MTLRAPAADQPNAPRSGRTLALLALAGVALALAFAALGAWQVER RVWKLALMQRVEQRLHAEPVPLPPRADWPRVDAAGHEYLPVLAQGRWLAGKTVLTQAA TELGAGFWVLTALQLDAGGQVLVNRGFIPEAQRGAWAAGTAFPLAREGAAAQVRGLLR MTEPGGGFLRSNDPARQRWHSRDVAAIARALGLEDAAPFFIDAGIPDPRAGNASPGAG PWPRPGMTVVRFHNSHLVYAITWFGLAAMAAAATVFVTRHELRLRAAASAR" sig_peptide complement(2347346..2347462) /locus_tag="Alide2_2245" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.939 at residue 39" misc_feature complement(2346731..2347345) /locus_tag="Alide2_2245" /note="SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring...; Region: SURF1; cd06662" /db_xref="CDD:119401" gene complement(2347459..2347833) /locus_tag="Alide2_2246" /db_xref="GeneID:10483290" CDS complement(2347459..2347833) /locus_tag="Alide2_2246" /inference="protein motif:TFAM:TIGR02847" /note="KEGG: ajs:Ajs_2778 cytochrome c oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit IV" /protein_id="YP_004388130.1" /db_xref="GI:330824827" /db_xref="GO:0008827" /db_xref="InterPro:IPR005171" /db_xref="InterPro:IPR014210" /db_xref="GeneID:10483290" /translation="MSAHELHAGHGGHHQDDHHHDDIHVTRGDYVKGFVLAVILTAIP FWLVMNGAIQDRTTGALVLGLFAAVQIVVHMVYFLHMNGKIQGGWTMLSTLFTIVFLA VTIAGTLWVMFHMNAAMMPSHP" misc_feature complement(2347474..2347752) /locus_tag="Alide2_2246" /note="Prokaryotic Cytochrome C oxidase subunit IV; Region: COX4_pro; cl01204" /db_xref="CDD:194066" gene complement(2347834..2348466) /locus_tag="Alide2_2247" /db_xref="GeneID:10483291" CDS complement(2347834..2348466) /locus_tag="Alide2_2247" /inference="protein motif:TFAM:TIGR02842" /note="KEGG: dia:Dtpsy_2267 cytochrome o ubiquinol oxidase, subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit III" /protein_id="YP_004388131.1" /db_xref="GI:330824828" /db_xref="GO:0050661" /db_xref="InterPro:IPR000298" /db_xref="InterPro:IPR014206" /db_xref="GeneID:10483291" /translation="MSDTHTLPASAAAQAERQYHLAHEPHPENGTSLGFWLYLMSDCL IFAVLFATYGVLGRNYAGGPTGAELFDLKLVAINTAFLLLSSITFGFAMLQKQQRDVR GTLAWLAVTGLLGLAFLAVELYEFAHLLHEGAGPQRSAFLSSFFTLVGTHGLHVTFGT IWLVTLMIQIGKHGLIPENARRLNCLSMFWHFLDVVWIGVFTFVYLMGVL" misc_feature complement(2347843..2348400) /locus_tag="Alide2_2247" /note="Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously...; Region: Ubiquinol_oxidase_III; cd02863" /db_xref="CDD:29487" misc_feature complement(order(2348311..2348313,2348320..2348325, 2348332..2348337,2348356..2348358,2348365..2348367, 2348377..2348382)) /locus_tag="Alide2_2247" /note="Subunit I/III interface [polypeptide binding]; other site" /db_xref="CDD:29487" misc_feature complement(order(2347894..2347896,2347915..2347917, 2348200..2348205,2348215..2348217,2348224..2348226, 2348335..2348337,2348359..2348361)) /locus_tag="Alide2_2247" /note="Subunit III/IV interface [polypeptide binding]; other site" /db_xref="CDD:29487" gene complement(2348459..2350465) /locus_tag="Alide2_2248" /db_xref="GeneID:10483292" CDS complement(2348459..2350465) /locus_tag="Alide2_2248" /EC_number="1.9.3.1" /inference="protein motif:TFAM:TIGR02843" /note="TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; KEGG: ajs:Ajs_2776 cytochrome-c oxidase; PFAM: Cytochrome c oxidase, subunit I" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit I" /protein_id="YP_004388132.1" /db_xref="GI:330824829" /db_xref="GO:0020037" /db_xref="InterPro:IPR000883" /db_xref="InterPro:IPR014207" /db_xref="GeneID:10483292" /translation="MPEHTIPPAHWLLGRITWDSIPMAHEPIVLWTFIAVVLGGLVVV AALFKFRLWGPLWRDWFCSIDHKKIGIMYMVLGLVMFLRGFADAAMMRLQQSMAFGEN MGYLPPHHYDQIFTAHGVIMIFFVAMPFVTGLMNYLVPLQIGARDVSFPFLNNFSFWM TTGGAVLVMLSLFLGEFSTAGWLALSNLGAQDPGVGLDYYIWGLQVAGVGTTLSGINL IVTIIKMRAPGMQLMKMPVFSWTALCTNALIVATFPILTAALVLMSLDRYAGTNFFTN DLGGNSMLYVNLIWIWGHPEVYILVLPAFGVFSEVVATFSRKRLFGYTSMVYATVCIT VLSYLVWLHHFFTMGSGATVNTFFGITTMIISIPTGAKIFNWLFTMYKGRIRFELPML WTVGFMVTFAIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVVFAVFAGINYWF PKAFGYKLDEFWGRCSFWFWLVGFWVAFTPLYILGLMGATRRVNHFEDPSLQIWFVIA ACGAALIALGIASFLIQLAVSYARREQLRDVTGDPWDARTLEWATSSPPPQYNFAFTP VAHEIDAWWDMKKHGYQRPLAGFQPIHMPANTGAGVVIAGLSTLFGFAMIWHMWPLAI ASFAATVLASIIHTFNYQRDYHIPAAEVAATEEARTQQLAAAHV" misc_feature complement(2348615..2350318) /locus_tag="Alide2_2248" /note="Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]; Region: CyoB; COG0843" /db_xref="CDD:31185" misc_feature complement(2348780..2350288) /locus_tag="Alide2_2248" /note="Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons...; Region: Ubiquinol_Oxidase_I; cd01662" /db_xref="CDD:29933" misc_feature complement(order(2349803..2349805,2349815..2349817, 2349833..2349838,2349995..2349997,2350004..2350006, 2350025..2350027,2350055..2350057,2350247..2350249)) /locus_tag="Alide2_2248" /note="D-pathway; other site" /db_xref="CDD:29933" misc_feature complement(order(2350121..2350129,2350136..2350138, 2350193..2350198,2350205..2350207,2350217..2350219)) /locus_tag="Alide2_2248" /note="Putative ubiquinol binding site [chemical binding]; other site" /db_xref="CDD:29933" misc_feature complement(order(2348921..2348923,2349035..2349037, 2349161..2349163,2349173..2349175,2350112..2350114)) /locus_tag="Alide2_2248" /note="Low-spin heme (heme b) binding site [chemical binding]; other site" /db_xref="CDD:29933" misc_feature complement(order(2348993..2348995,2349200..2349205, 2349215..2349217,2349605..2349610,2349623..2349625)) /locus_tag="Alide2_2248" /note="Putative water exit pathway; other site" /db_xref="CDD:29933" misc_feature complement(order(2349179..2349181,2349434..2349439, 2349584..2349586)) /locus_tag="Alide2_2248" /note="Binuclear center (heme o3/CuB) [ion binding]; other site" /db_xref="CDD:29933" misc_feature complement(order(2349350..2349352,2349359..2349361, 2349434..2349439,2349539..2349541,2349572..2349574, 2349584..2349586)) /locus_tag="Alide2_2248" /note="K-pathway; other site" /db_xref="CDD:29933" misc_feature complement(order(2348990..2348995,2349200..2349205, 2349434..2349436)) /locus_tag="Alide2_2248" /note="Putative proton exit pathway; other site" /db_xref="CDD:29933" gene complement(2350490..2351479) /locus_tag="Alide2_2249" /db_xref="GeneID:10483293" CDS complement(2350490..2351479) /locus_tag="Alide2_2249" /inference="protein motif:TFAM:TIGR01433" /note="KEGG: ajs:Ajs_2775 ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal" /codon_start=1 /transl_table=11 /product="ubiquinol oxidase subunit II" /protein_id="YP_004388133.1" /db_xref="GI:330824830" /db_xref="GO:0050661" /db_xref="InterPro:IPR002429" /db_xref="InterPro:IPR006333" /db_xref="InterPro:IPR010514" /db_xref="GeneID:10483293" /translation="MIHMKKLRGPAWLAAAAAVAGLAGCGKTVVLNPAGDIAAQQGDL VVTATLLMLIVIVPVILLTLLFAWKYRQGNADAKYDPDWHHSTVLELVIWTVPLMIII ALGALTWIATHKLDPYRPLDRIDAQRALAADARPLEVEVVAMDWKWLFFYPEQGIATV NELAAPVDRPIRFKLTATSTMNAFYVPDLAGMIYAMPGMQTELNAVINKPGVFQGLAS HYSGKGFSGMTFKFHGLSDAEFAQWIDKAKAEGKPLDKAAYLQLARPSERDPVQRFSS VEPDLYHRVLNRCVEDGQPCMHETMAKDARRGAAAAPAEAPAHAQHGAGGHHQ" sig_peptide complement(2351399..2351479) /locus_tag="Alide2_2249" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.742) with cleavage site probability 0.236 at residue 27" misc_feature complement(2350616..2351395) /locus_tag="Alide2_2249" /note="cytochrome o ubiquinol oxidase subunit II; Provisional; Region: PRK10525" /db_xref="CDD:182518" misc_feature complement(2350796..>2350999) /locus_tag="Alide2_2249" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" misc_feature complement(2350601..2350738) /locus_tag="Alide2_2249" /note="COX Aromatic Rich Motif; Region: COX_ARM; pfam06481" /db_xref="CDD:148220" gene 2351781..2353112 /locus_tag="Alide2_2250" /db_xref="GeneID:10483294" CDS 2351781..2353112 /locus_tag="Alide2_2250" /inference="protein motif:PFAM:PF00083" /note="PFAM: General substrate transporter; KEGG: ajs:Ajs_2774 general substrate transporter" /codon_start=1 /transl_table=11 /product="general substrate transporter" /protein_id="YP_004388134.1" /db_xref="GI:330824831" /db_xref="GO:0005215" /db_xref="InterPro:IPR005828" /db_xref="GeneID:10483294" /translation="MSSASIAYPVYGHEDAASLSRAHTDEDVTPGEIAVGVVIGRASE YFDFFVFGIACVLVFPSLLFPFLSHLDGTLAAFAIFAIAFVARPFGTAISMAVQRRWG RGTKLTLALFVLGVCTVGMAFLPGYRTAGAAAIVALAALRFGQGLALGGSWDGLPSLL AMAAPPERRGWYAMVGQLGAPLGFVLAASLFAYLYGSLSLAEFLDWGWRYPFCVAFAI NVVALFARLRLVVGQSYAELLEEKELEPVGVARLMQDEGGNVVLGAFAALASFALFHV VTVFPLSWMSLYSGRSMTGVLGVQIVGALLAIAAVALSGRLADRVGRRNLLGSMAVLI GLFSLATPWLLGGGELGGNVFLLAGFVLLGLSYGQASGTVTANFSARYRYTGAALSAD LAWLIGAAFAPLVALGLSARFGLGAVTLYLLSGVACTLAALRINRMIEQRS" misc_feature 2351898..2353070 /locus_tag="Alide2_2250" /note="metabolite-proton symporter; Region: 2A0106; TIGR00883" /db_xref="CDD:188094" gene complement(2353221..2354183) /locus_tag="Alide2_2251" /db_xref="GeneID:10483295" CDS complement(2353221..2354183) /locus_tag="Alide2_2251" /inference="protein motif:TFAM:TIGR02794" /note="KEGG: dia:Dtpsy_2263 protein TolA; TIGRFAM: Tol-Pal system, TolA; TonB, C-terminal; PFAM: Tol-Pal system, TolA" /codon_start=1 /transl_table=11 /product="protein TolA" /protein_id="YP_004388135.1" /db_xref="GI:330824832" /db_xref="GO:0005215" /db_xref="GO:0008565" /db_xref="InterPro:IPR006260" /db_xref="InterPro:IPR014161" /db_xref="GeneID:10483295" /translation="MHATNDRDQFAPPRPPGRMRAIALAVLAHAILIGALTWGVNWKS SADQPAVEAELWAAVPQQAAPRAAEPPPPPEPEPEPQPTPAPPPPPPPPPPPRQAEPD THEADIALQKQKKREEELKKKREQQLEQEKKDKERRERLEQEKKERQLAQQKAEHEKA ERAKKLAEQKRLEQQKAEQEKQKKLAEEKRKAELEAKRAEEFRKDQMRRIAGLAGATG GETATGTAQRSAGPSGGYAGKVAAKVKPNIVYPDLVEGNPRAEVEVRAAPDGTIVGTR ILHSSGNKAWDDAVIRALQRTETLPRDVDGRVPSSLVIGFRPKD" misc_feature complement(2353233..2353448) /locus_tag="Alide2_2251" /note="Gram-negative bacterial tonB protein; Region: TonB; cl10048" /db_xref="CDD:195954" gene complement(2354205..2354630) /locus_tag="Alide2_2252" /db_xref="GeneID:10483296" CDS complement(2354205..2354630) /locus_tag="Alide2_2252" /inference="protein motif:PFAM:PF02472" /note="PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR" /codon_start=1 /transl_table=11 /product="Biopolymer transport protein ExbD/TolR" /protein_id="YP_004388136.1" /db_xref="GI:330824833" /db_xref="GO:0005215" /db_xref="InterPro:IPR003400" /db_xref="GeneID:10483296" /translation="MPAMASRSGTRRRSMNEINMVPFIDVMLVLLIIFMVTAPMLTPS SVNLPSVGKGTKMPKTRADVIVDKDGGIRFKADGNERTVPLQNLGSTARNWLKDQPED TPVLISADKNVSYDSVMKAMSALQAAGIPRVALAVKSGG" misc_feature complement(2354217..2354588) /locus_tag="Alide2_2252" /note="Biopolymer transport protein ExbD/TolR; Region: ExbD; cl00537" /db_xref="CDD:193858" gene complement(2354644..2355345) /locus_tag="Alide2_2253" /db_xref="GeneID:10483297" CDS complement(2354644..2355345) /locus_tag="Alide2_2253" /inference="protein motif:TFAM:TIGR02796" /note="KEGG: dia:Dtpsy_2261 protein TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel" /codon_start=1 /transl_table=11 /product="protein TolQ" /protein_id="YP_004388137.1" /db_xref="GI:330824834" /db_xref="InterPro:IPR002898" /db_xref="InterPro:IPR014163" /db_xref="GeneID:10483297" /translation="MNSQDMSILSLVLNASWVVQLVMLLLLAVSVASWAAIFRKLFAL KRVKALNEDFERDFWSGTSLNELFAAAAHNAKSAGPMERIFASGMREYQKLRERRITD PGTLLDGARRAMRASFQREMDVIESSLSFLGSVASVSPYVGLFGTVWGIMHAFTGFAG MEQVTLATVAPGIAEALVATAIGLFAAIPAVIAYNRFARDIDRVAIHQETFIEEFSNI LQRNLGAHPASPSGH" sig_peptide complement(2355238..2355345) /locus_tag="Alide2_2253" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.932) with cleavage site probability 0.928 at residue 36" misc_feature complement(2354683..2355327) /locus_tag="Alide2_2253" /note="MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568" /db_xref="CDD:186086" gene complement(2355342..2355764) /locus_tag="Alide2_2254" /db_xref="GeneID:10483298" CDS complement(2355342..2355764) /locus_tag="Alide2_2254" /inference="protein motif:TFAM:TIGR02799" /note="KEGG: dia:Dtpsy_2260 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily" /codon_start=1 /transl_table=11 /product="tol-pal system-associated acyl-CoA thioesterase" /protein_id="YP_004388138.1" /db_xref="GI:330824835" /db_xref="GO:0005515" /db_xref="GO:0016787" /db_xref="GO:0016790" /db_xref="InterPro:IPR006683" /db_xref="InterPro:IPR006684" /db_xref="InterPro:IPR014166" /db_xref="GeneID:10483298" /translation="MFEWPVRIYWEDTDAGGIVFYANYLKFFERARTEWLRSLDLGQQ RLRELTGGMFVVTDARLRYLRPARLDDELIVTARLQECGRASLTIEQQALLKPEQMNP EFPPALLCEGSIRIGWVEAATLRPARIPGPLLERLSSS" misc_feature complement(2355408..2355761) /locus_tag="Alide2_2254" /note="4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active...; Region: 4HBT; cd00586" /db_xref="CDD:48031" misc_feature complement(order(2355507..2355518,2355597..2355599, 2355603..2355605,2355678..2355680)) /locus_tag="Alide2_2254" /note="active site" /db_xref="CDD:48031" gene complement(2355767..2356951) /locus_tag="Alide2_2255" /db_xref="GeneID:10483299" CDS complement(2355767..2356951) /locus_tag="Alide2_2255" /EC_number="2.6.1.1" /inference="protein motif:PRIAM:2.6.1.1" /note="KEGG: dia:Dtpsy_2259 aminotransferase; PFAM: Aminotransferase, class I/classII" /codon_start=1 /transl_table=11 /product="aspartate transaminase" /protein_id="YP_004388139.1" /db_xref="GI:330824836" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10483299" /translation="MKFSTRAERIEPFYVMEVAKAAQGLAREVAGTREPMIFLNIGEP DFTAPPLVRQAADRAVRDGLTQYTNALGLDELRERISGWYAARFGVNVPARRIVVTAG ASAALQLACLALIDAGDEILMPDPSYPCNRHFVSAADGRAVLVPTTAEERFQLSAAKV EAAWGARTRGVLLASPSNPTGTSIAPDELRRIHEAVRARGGITVIDEIYLGLSYEEAF GHTALALGEDVISINSFSKYFNMTGWRLGWMVVPEAMVSVVERLAQNLFICASTISQH AALACFEAESIAEYERRRAEFKARRDFFIPALNRLGLTVPVPPDGAFYAWADCGEAAR RLGVQGSWDFAFELMRRAHLAITPGRDFGTADTARFVRFSTANSMAQLQEAVARMQAL IG" misc_feature complement(2355782..2356870) /locus_tag="Alide2_2255" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature complement(2355779..2356843) /locus_tag="Alide2_2255" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(2356217..2356219,2356241..2356246, 2356250..2356252,2356325..2356327,2356418..2356420, 2356568..2356570,2356640..2356648)) /locus_tag="Alide2_2255" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(2356121..2356123,2356130..2356132, 2356217..2356225,2356346..2356348,2356538..2356540, 2356637..2356639)) /locus_tag="Alide2_2255" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(2356241..2356243) /locus_tag="Alide2_2255" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(2357023..2357568) /locus_tag="Alide2_2256" /db_xref="GeneID:10483300" CDS complement(2357023..2357568) /locus_tag="Alide2_2256" /inference="protein motif:HAMAP:MF_00073" /note="TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: dia:Dtpsy_2258 NusB antitermination factor; PFAM: NusB/RsmB/TIM44" /codon_start=1 /transl_table=11 /product="NusB antitermination factor" /protein_id="YP_004388140.1" /db_xref="GI:330824837" /db_xref="InterPro:IPR006027" /db_xref="InterPro:IPR011605" /db_xref="GeneID:10483300" /translation="MSEASTPGQPMPSKRPPRQPRTGLTATGARKAGSKSGRSRAREF ALQALYQHLVGGNDATAIDLFTRDLSGFHKADAAHYDALLHGCIETAQHMDALIAPLL DRKMAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAKEFGGTDGHKYVNGILN GLAPQLRAAEVAADKAAGKAG" misc_feature complement(2357071..2357457) /locus_tag="Alide2_2256" /note="Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus...; Region: Terminator_NusB; cd00619" /db_xref="CDD:29565" misc_feature complement(order(2357443..2357445,2357455..2357457)) /locus_tag="Alide2_2256" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:29565" gene complement(2357565..2358029) /locus_tag="Alide2_2257" /db_xref="GeneID:10483301" CDS complement(2357565..2358029) /locus_tag="Alide2_2257" /inference="protein motif:TFAM:TIGR00114" /note="KEGG: ajs:Ajs_2767 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase" /codon_start=1 /transl_table=11 /product="6,7-dimethyl-8-ribityllumazine synthase" /protein_id="YP_004388141.1" /db_xref="GI:330824838" /db_xref="InterPro:IPR002180" /db_xref="GeneID:10483301" /translation="MFGADKGTADRLDGRKLHIGIVQARFNENITNALAAACRAELLR LGVQEQHIRHVLVPGALEVPLALQAMAERGGYDALIALGCIIRGETYHFELVANESGA GVTRIGLDYQIPIANAILTTENLEQAIARQSEKGVDAARVAVEMANLQEELS" misc_feature complement(2357589..2357975) /locus_tag="Alide2_2257" /note="lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209" /db_xref="CDD:187742" misc_feature complement(order(2357592..2357597,2357604..2357606, 2357616..2357618,2357625..2357627,2357637..2357639, 2357649..2357651,2357661..2357663,2357667..2357669, 2357673..2357675,2357679..2357681,2357691..2357696, 2357703..2357717,2357721..2357729,2357733..2357741, 2357745..2357750,2357754..2357756,2357760..2357765, 2357769..2357771,2357802..2357804,2357814..2357816, 2357820..2357828,2357832..2357840,2357844..2357849, 2357856..2357867,2357952..2357954,2357970..2357972)) /locus_tag="Alide2_2257" /note="homopentamer interface [polypeptide binding]; other site" /db_xref="CDD:187742" misc_feature complement(order(2357616..2357618,2357625..2357627, 2357637..2357639,2357670..2357684,2357751..2357756, 2357760..2357762,2357766..2357783,2357844..2357855, 2357949..2357954)) /locus_tag="Alide2_2257" /note="active site" /db_xref="CDD:187742" gene complement(2358033..2359154) /locus_tag="Alide2_2258" /db_xref="GeneID:10483302" CDS complement(2358033..2359154) /locus_tag="Alide2_2258" /inference="protein motif:TFAM:TIGR00506" /note="KEGG: dia:Dtpsy_2256 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA" /codon_start=1 /transl_table=11 /product="3,4-dihydroxy-2-butanone 4-phosphate synthase" /protein_id="YP_004388142.1" /db_xref="GI:330824839" /db_xref="GO:0008686" /db_xref="InterPro:IPR000422" /db_xref="InterPro:IPR000926" /db_xref="GeneID:10483302" /translation="MNTPLTPAPISPVQDIVAELAAGRIVILVDEEDRENEGDLVIAA DHVTPEAINFMARFGRGLVCLTLTRERCERLQLPPMVARNGTKMGTAFTVSIEAAEGV TTGISAADRARTVQAAVAPHAQASDLVQPGHIFPLQAVDGGVLMRAGHTEAGCDLAAM AGCSPAAVICEVMKDDGTMARLPDLQLFAAEHGLKIGTIADLIEHRSRTESLVHKAGS RPMQTAFGEFTAHAFRDEPSQGVHLALVKGQWDAQESVPVRVHEPLSVLDTLESSRAM HSWSLDASLRYIAAQGRGVAVLLNCGETGEQLLAQFEGRARAAQAPERGRMDLRTYGV GAQILREVGVARMQLMGQPRRMPSMAGYGLEITGYIPKE" misc_feature complement(2358036..2359127) /locus_tag="Alide2_2258" /note="bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional; Region: PRK14019" /db_xref="CDD:184457" misc_feature complement(2358537..2359118) /locus_tag="Alide2_2258" /note="3,4-dihydroxy-2-butanone 4-phosphate synthase; Region: DHBP_synthase; cl00336" /db_xref="CDD:185917" misc_feature complement(2358042..2358521) /locus_tag="Alide2_2258" /note="GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cl00522" /db_xref="CDD:193852" misc_feature complement(order(2358186..2358188,2358195..2358200, 2358204..2358206,2358222..2358224,2358261..2358263, 2358300..2358302,2358309..2358314,2358333..2358335, 2358339..2358353,2358357..2358362,2358366..2358368, 2358420..2358422,2358426..2358428,2358432..2358434, 2358453..2358461,2358465..2358467,2358489..2358509)) /locus_tag="Alide2_2258" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:88311" misc_feature complement(order(2358090..2358092,2358099..2358104, 2358165..2358167,2358171..2358173,2358189..2358191, 2358198..2358200,2358210..2358221,2358315..2358317, 2358324..2358326,2358330..2358332,2358357..2358359, 2358363..2358380)) /locus_tag="Alide2_2258" /note="active site" /db_xref="CDD:88311" gene complement(2359292..2359579) /locus_tag="Alide2_2259" /db_xref="GeneID:10483303" CDS complement(2359292..2359579) /locus_tag="Alide2_2259" /inference="protein motif:PFAM:PF00111" /note="PFAM: Ferredoxin; KEGG: dia:Dtpsy_2255 ferredoxin" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="YP_004388143.1" /db_xref="GI:330824840" /db_xref="GO:0009055" /db_xref="GO:0051536" /db_xref="InterPro:IPR001041" /db_xref="GeneID:10483303" /translation="MSTPPFFTARVGDDGTQCDAWPDQPLLVSLEQGGIDWPSSCRNG TCRTCICLLVQGQVRYEVEWPGLSAEEKAEGWVLPCVARPVSDVTLEAPAV" misc_feature complement(2359307..2359558) /locus_tag="Alide2_2259" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature complement(order(2359340..2359345,2359433..2359444, 2359448..2359450,2359457..2359459,2359466..2359471)) /locus_tag="Alide2_2259" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature complement(order(2359340..2359342,2359433..2359435, 2359442..2359444,2359457..2359459)) /locus_tag="Alide2_2259" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" gene complement(2359937..2360818) /locus_tag="Alide2_2260" /db_xref="GeneID:10483304" CDS complement(2359937..2360818) /locus_tag="Alide2_2260" /inference="protein motif:PFAM:PF00293" /note="PFAM: NUDIX hydrolase domain; KEGG: pna:Pnap_2699 NUDIX hydrolase" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="YP_004388144.1" /db_xref="GI:330824841" /db_xref="GO:0016787" /db_xref="InterPro:IPR000086" /db_xref="GeneID:10483304" /translation="MQPVPHPSTPEIPRDAASVVLLRDTPAGIETLLLRRHAQMANMG GLYVFPGGKLDAADRDGAALLDQPAQTLHEGLGESALDPATAAGLHVAALREALEECG LLLAEPAQAQAPVDAPRARAMLREGQPLAQVLAALQLRLSTRRMCAWSRWITPETPAM ATRRFDTRFFVAQAPDGQEAGHDDEETTASVWIAPRTALEQYRDGQIDLAPPQIMGLA HLARHASVRSVMEQARLRRPPTVLPEAFEHEGARVICYPGDPLHSVRDRALPGPTRLY QREQRFFPGDGFESLFA" gene 2360949..2361857 /locus_tag="Alide2_2261" /db_xref="GeneID:10483305" CDS 2360949..2361857 /locus_tag="Alide2_2261" /EC_number="1.1.1.35" /inference="protein motif:PRIAM:1.1.1.35" /note="KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-CoA dehydrogenase" /protein_id="YP_004388145.1" /db_xref="GI:330824842" /db_xref="InterPro:IPR002198" /db_xref="GeneID:10483305" /translation="MELDFKGRVAIVTGAGGGLGRQHALALAARGASVLVNDLGGAVD GSGGSAGAAQAVVDEIRAAGGQALANGASVTDFAAVQAMVQQAIDAWGRVDVLVNNAG ILRDKSFAKMDMADFQLVVQVHLMGAAHCCKAVWPHMQAQKYGRIVMTTSSTGLYGNF GQANYGAAKLAQVGLMQTLAIEGAKYGIHVNALAPTAATRMTAGLMPDEVLARLAPEA VVPAMLALAHESAPTRTILCAGAGSFEAAHITLTRGIHLGQGPDVPEQLAARLAEVCD RAGEQVPQNGSDQGANELRLAMAVAA" misc_feature 2360955..2361674 /locus_tag="Alide2_2261" /note="(3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs; Region: hydroxyacyl-CoA-like_DH_SDR_c-like; cd05353" /db_xref="CDD:187611" misc_feature order(2360955..2360957,2361036..2361038,2361270..2361278, 2361282..2361290,2361297..2361302,2361309..2361311, 2361321..2361326,2361333..2361335,2361342..2361347, 2361354..2361359,2361405..2361431,2361435..2361437, 2361444..2361449,2361456..2361461,2361465..2361473, 2361477..2361485,2361489..2361494,2361498..2361503, 2361507..2361509,2361576..2361578,2361585..2361590, 2361600..2361602,2361609..2361614,2361618..2361626, 2361642..2361644,2361654..2361662,2361666..2361674) /locus_tag="Alide2_2261" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187611" misc_feature 2360976..2361641 /locus_tag="Alide2_2261" /note="3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830" /db_xref="CDD:162551" misc_feature order(2360988..2360990,2360997..2361005,2361057..2361065, 2361069..2361071,2361165..2361170,2361246..2361257, 2361315..2361320,2361396..2361404,2361441..2361443, 2361453..2361455,2361531..2361539,2361543..2361554) /locus_tag="Alide2_2261" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187611" misc_feature order(2361318..2361320,2361402..2361404,2361441..2361443, 2361453..2361455) /locus_tag="Alide2_2261" /note="active site" /db_xref="CDD:187611" gene 2361965..2363497 /locus_tag="Alide2_2262" /db_xref="GeneID:10483306" CDS 2361965..2363497 /locus_tag="Alide2_2262" /EC_number="6.3.2.2" /inference="protein motif:TFAM:TIGR01434" /note="TIGRFAM: Glutamate--cysteine ligase, monofunctional; KEGG: dia:Dtpsy_1339 glutamate/cysteine ligase; PFAM: Glutamate--cysteine ligase" /codon_start=1 /transl_table=11 /product="glutamate/cysteine ligase" /protein_id="YP_004388146.1" /db_xref="GI:330824843" /db_xref="GO:0004357" /db_xref="InterPro:IPR006334" /db_xref="InterPro:IPR007370" /db_xref="GeneID:10483306" /translation="MSTLQQRIAALPAERLAGMRRGIEKEGLRVLPAGGLALTPHPLA LGSALTHPCITTDYSESQIELITGAHVGVEDCLDELTQIHQYVLRTLRDAGGEMLWVS SMPCGLPTDETIPIGRYGNSHIGRAKSIYRMGLAHRYGRRMQTISGIHYNWSLPGVTS EEYFALIRNFRRHAFVLLYLFGASPALCPCFVQGRTHGLQPMGDGREALYLPHATSLR MGRLGYQSDAQASLNVSYNGLSGYADSLHEALTRPYPAYEAIGIRNIGGDYNQLGTSL LQIENEFYGTIRPKRTVRRGERPLHALRERGVEYVEVRLMDLDPFESVGITAATMRLL DVFLLHCLLTDSPPDTPQEIAECKHNQHQTAERGREPGLLLQRRGQSVALADWAAQVL DECAPIAAALDQAQPGQDYAAALRQARAVLADSALAPSARVLAAMQAQPGCGFEAFSF AQSAKARDRLLALPWSARQQAHYEALAARSLAEQKDIEAQDQLPFEEWRQQYMDPRQL QA" misc_feature 2361965..2363470 /locus_tag="Alide2_2262" /note="Glutamate-cysteine ligase; Region: Glu_cys_ligase; cl01099" /db_xref="CDD:186333" gene 2363540..2365723 /locus_tag="Alide2_2263" /db_xref="GeneID:10483307" CDS 2363540..2365723 /locus_tag="Alide2_2263" /inference="similar to AA sequence:KEGG:Vapar_3567" /note="KEGG: vap:Vapar_3567 protein of unknown function DUF893 YccS/YhfK" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388147.1" /db_xref="GI:330824844" /db_xref="GeneID:10483307" /translation="MSIPLAFRLRTARRVLLSHYVANGTAGALGLLLISALVHLWLGS AAASAATVGAIVAIPPDMPAPRRGKLLHMLPAPLLALPLFLVVQRLHDAPWMLGLLIV PASFLAFLAMAWGKRGAPVAIAAVLALVFSMAVPAPAEGEGWRAALATTFHFGLGALL YQPWAVLSNRLLNGRYRVQLIADVLLSLADLMRLQALQFTPVLALGERDNPLMGALLL RQATLADQLQSARDIVLESPTSARQQRLAGMLLCALEMRDHLLASALDLEQLRRQPEQ AGALERLRDELLAQAGVLERLADALLLGRKPESQARPRLDLGALEEPAHAGFTPARLV RGLAYRIGHVQDEVGQLVALARGEREPDLALVRVYWQMFVSSTGWGWKPFWGLWRWRA APLRHAMRAALAIGVGYAVSQLLPWREHAYWIVLTIIVVLRGSLAQTLERRNERVAGT LLGCLIASALLAADMPHWALLACVTLAQAVAHSFTLRRYLFTAVAATVLGLVQAHLLG AGGSTGFVLLERMADTLIGAGLAWAFAYVLPSWERQQIPALVARTLAAQMRHAREALA LGQLQAVDNHPELAWRLARREAYDSLGALVQATARAWKEPRAVRPPLAPLERMQAHCY QLLAQLTAVKSMLLLRRGHLRGEDVHAPLQAAAQRIEAILSGQDMPAPPEHGADDGLA AEPLPALVETDLTPWLLRRLRLAEGLARQMRAEAGQVVAPLSEAA" misc_feature 2363795..2364517 /locus_tag="Alide2_2263" /note="FUSC-like inner membrane protein yccS; Region: FUSC-like; pfam12805" /db_xref="CDD:193281" misc_feature 2364008..2365438 /locus_tag="Alide2_2263" /note="integral membrane protein, YccS/YhfK family; Region: YCCS_YHJK; TIGR01667" /db_xref="CDD:130728" gene complement(2365720..2365932) /locus_tag="Alide2_2264" /db_xref="GeneID:10483308" CDS complement(2365720..2365932) /locus_tag="Alide2_2264" /inference="similar to AA sequence:KEGG:Aave_2269" /note="KEGG: aav:Aave_2269 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388148.1" /db_xref="GI:330824845" /db_xref="GeneID:10483308" /translation="MPATPPHKQNAEMLFKGVVCALIGAVILLAPYIARSPSVQELMR QAALVGWFSLVLGVAFIVRALWQRWR" gene complement(2366030..2366395) /locus_tag="Alide2_2265" /db_xref="GeneID:10483309" CDS complement(2366030..2366395) /locus_tag="Alide2_2265" /inference="protein motif:PFAM:PF01042" /note="PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_4413 endoribonuclease L-PSP" /codon_start=1 /transl_table=11 /product="endoribonuclease L-PSP" /protein_id="YP_004388149.1" /db_xref="GI:330824846" /db_xref="InterPro:IPR006175" /db_xref="GeneID:10483309" /translation="MEIKRIATDNRRSRAVVYNNMVFVGGQTADDRSQDIRGQTAQTL AKIEKFLAEAGTDKSRLLTAQIWIKDLERDFAGMNEVWDAWTAPNAAPTRATAQCEMG AQDILVEIVVTAAVDQPMA" misc_feature complement(2366051..2366365) /locus_tag="Alide2_2265" /note="This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_2; cd06150" /db_xref="CDD:100007" misc_feature complement(order(2366057..2366059,2366063..2366065, 2366069..2366071,2366099..2366125,2366138..2366140, 2366150..2366152,2366159..2366161,2366195..2366197, 2366201..2366203,2366207..2366212,2366216..2366218, 2366318..2366323,2366327..2366329,2366333..2366335, 2366342..2366344,2366348..2366350,2366357..2366362)) /locus_tag="Alide2_2265" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100007" misc_feature complement(order(2366069..2366071,2366114..2366116, 2366159..2366161,2366171..2366173,2366360..2366362)) /locus_tag="Alide2_2265" /note="putative active site [active]" /db_xref="CDD:100007" gene complement(2366430..2367818) /locus_tag="Alide2_2266" /db_xref="GeneID:10483310" CDS complement(2366430..2367818) /locus_tag="Alide2_2266" /inference="protein motif:PFAM:PF04324" /note="PFAM: BFD-like [2Fe-2S]-binding domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_4414 BFD-like (2Fe-2S)-binding region" /codon_start=1 /transl_table=11 /product="BFD domain-containing protein (2Fe-2S)-binding domain-containing protein" /protein_id="YP_004388150.1" /db_xref="GI:330824847" /db_xref="InterPro:IPR007419" /db_xref="InterPro:IPR013027" /db_xref="GeneID:10483310" /translation="MATGVEVFDLVVIGAGPAGLSAAIEARRFGLSAVVLDEQRRVGG QIYRAIEESSPRRREVLGADYAAGAKLAQDFASCGAVHVGGAAVWNVDRDKTVSYLLD GGSRKVRGRSLVLASGAMERPFPVPGWTLPGVMGAGAAQILYKSSGAVPTEPVVLAGG GPLLFLLAQQYLEAGVKIKALIHTTGADDYLRAAPHVLGALRGWKDLSKGTRMLKKIR SHGVQTFAGASSFAIEGSEKAESIAFTHNGQRKRVETSLVLLHQGVVPNTQLSWSLRA EHRWDERQLCWIPITDAYGQIEETGIYIAGDSRGIVGAKASACQGRLAALSIANRLQP IAPGAFKQREQAILDEIRAHVQIRPFLDALYRPQNEHRIPEHDEVMVCRCEEVKAGQI RKYVEVGCLGPNQTKAFGRCGMGPCQGRLCGLTVTEIIASERKVSPQDVGYYRIRPPI KPITLGELASSE" misc_feature complement(<2367690..2367797) /locus_tag="Alide2_2266" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(<2366439..2367794) /locus_tag="Alide2_2266" /note="sarcosine oxidase, alpha subunit family, heterotetrameric form; Region: soxA; TIGR01372" /db_xref="CDD:162324" misc_feature complement(2366517..2366678) /locus_tag="Alide2_2266" /note="BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; cl01093" /db_xref="CDD:194032" gene complement(2367820..2368164) /locus_tag="Alide2_2267" /db_xref="GeneID:10483311" CDS complement(2367820..2368164) /locus_tag="Alide2_2267" /inference="similar to AA sequence:KEGG:Bpro_4415" /note="KEGG: pol:Bpro_4415 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388151.1" /db_xref="GI:330824848" /db_xref="GeneID:10483311" /translation="MHTKTQESRISLFMPEENAGGRKIRIYFDDQQLTVPEGVSVASA LLMSGVRTFRATPVSGSPRAPYCMMGVCFECLVEIDGRPSRQSCLTQVQEGMVIKRQD GASGLNIPSAEG" misc_feature complement(<2367859..2368098) /locus_tag="Alide2_2267" /note="NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]; Region: NuoG; COG1034" /db_xref="CDD:31237" gene complement(2368154..2369290) /locus_tag="Alide2_2268" /db_xref="GeneID:10483312" CDS complement(2368154..2369290) /locus_tag="Alide2_2268" /inference="protein motif:PFAM:PF01266" /note="KEGG: pol:Bpro_4416 FAD dependent oxidoreductase; manually curated; PFAM: FAD dependent oxidoreductase" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_004388152.1" /db_xref="GI:330824849" /db_xref="GO:0016491" /db_xref="InterPro:IPR006076" /db_xref="GeneID:10483312" /translation="MSSNGIIVVGGGLVGAAIAYGAAKSGSAVTLLDQGDVAYRASRG NFGLVWLQSKGAGFPRYARWSRDAVDHWGPLASELRELTGVDVDLQQNGGFWIGFSEK EVAEREAMLAKINAADGRTPFEMLDHRELKARLPAIGPKVAGGSWCSLDGHANPLKLL HALHAGIQALGGRICNGADVAEVCPLGEGQGFRARSSDGRQWIGEKIVLAAGLSNSVL APQLGLHAPVVPNRGQVLITERLKKFLPHPTNKARQTAEGTVQLGFSVEDVGLDDGTT VAAIEWIAKRAVATFPILSSVKLVRAWGALRVMTPDGSPIYQESARYPGAFTATSHSG VSLAGSHAYEIGPWITGVKSAPEGIEEFAGERFLDPDRKFSNAH" misc_feature complement(2368391..2369206) /locus_tag="Alide2_2268" /note="FAD dependent oxidoreductase; Region: DAO; pfam01266" /db_xref="CDD:189916" gene complement(2369335..2370318) /locus_tag="Alide2_2269" /db_xref="GeneID:10483313" CDS complement(2369335..2370318) /locus_tag="Alide2_2269" /inference="similar to AA sequence:KEGG:Daci_0779" /note="KEGG: dac:Daci_0779 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388153.1" /db_xref="GI:330824850" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10483313" /translation="MSSRIARRPFLASAIFTLLFSLGSAAQAEWPEKPIRFIVNAAAG GAADGTARVLADGLSKRLGQPIIIDNKPGASGVIGLDTVAKAAPDGYTIGNSNLATYI VTALTAKSLPYDPAKSFTPIAKQWTQPNLLGVSPTIPVKSVADLVNYAKTHPGEIFYG STGNGTALHVLGALFANLTGAQITHVPYKSAPAAELDLAAGQIQMMFSNFTSMEPQVK AGRINALAITGPNRSPMLPNVPTIREAGYPDLEMETWGGVVGPANMPPAIVEKLHREI NAVLSDPEVIKKHEKLGAKVAPVSIADYRQMLNADSARWGEVVRRNNITLN" sig_peptide complement(2370232..2370318) /locus_tag="Alide2_2269" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.881 at residue 29" misc_feature complement(2369347..2370291) /locus_tag="Alide2_2269" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2369347..2370165) /locus_tag="Alide2_2269" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2370393..2371316) /locus_tag="Alide2_2270" /db_xref="GeneID:10483314" CDS complement(2370393..2371316) /locus_tag="Alide2_2270" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004388154.1" /db_xref="GI:330824851" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10483314" /translation="MTSRNVTYRMIEAFRAAMLHNGISAGADSLGITQPAMSRLIADL QKSTGILLFAKSGRTIKPTEEAHALMAKVQQSFLGLEQIIDFSDQLRKQKLGQLSISA IPSIGHSIIPAVVRQLREKFPDVLISLRVASYIDVARHVKTRQADIGLTADTLSLGDL ETVAEFSSECVCIGTGKWLDPKASHIHVSEFAGKPFIASTGTFQTRLDAWLGANGVQV DAMVEASLFQSISDLCLEGLGIAVVDPMTAAKHQRRGGVALPLRPSIGYTVYATAMSD ARLSAPAKELIRLVAAASSGKHITPMHESMI" misc_feature complement(2370438..2371298) /locus_tag="Alide2_2270" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(2371116..2371292) /locus_tag="Alide2_2270" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2370450..2371025) /locus_tag="Alide2_2270" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(2370609..2370614,2370618..2370623, 2370639..2370656,2370924..2370944,2370948..2370950, 2370960..2370962,2370969..2370974,2370978..2370983)) /locus_tag="Alide2_2270" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 2371489..2372448 /locus_tag="Alide2_2271" /db_xref="GeneID:10483315" CDS 2371489..2372448 /locus_tag="Alide2_2271" /inference="protein motif:TFAM:TIGR03596" /note="KEGG: ajs:Ajs_2510 GTP-binding protein, HSR1-related; TIGRFAM: GTP-binding protein, ribosome biogenesis, YlqF; PFAM: GTP-binding protein, HSR1-related" /codon_start=1 /transl_table=11 /product="ribosome biogenesis GTP-binding protein YlqF" /protein_id="YP_004388155.1" /db_xref="GI:330824852" /db_xref="InterPro:IPR002917" /db_xref="InterPro:IPR019991" /db_xref="GeneID:10483315" /translation="MSIQWFPGHMHLTRKAIGERIKDIDVVIELLDARLPGSSGNPLL AELTGHKPTLKVLNKQDVADPARTPAWLDWYNARPGTRAIALDASDAAPARRLVEACR QLAPNRRGLSRPMRVLICGIPNVGKSTLINTLSAKREAKTGDEAGVTKQEQRIVLDDD FYLWDTPGMLWPRIIVPESGYRLAASGAVGRNAYDEEEVALELLAYVKRHYASLLDAR YKLGLDAQAIGASHDDELLALIAKKRGAVMSGGRLNLQKAAEIVLTDLRSAALGRVTL EIPEEFESWLAAARLKEKERAERKAEQRKRDERRARNAPRDDG" misc_feature 2371495..2372319 /locus_tag="Alide2_2271" /note="ribosome biogenesis GTP-binding protein YlqF; Region: GTPase_YlqF; TIGR03596" /db_xref="CDD:188348" misc_feature 2371501..2371998 /locus_tag="Alide2_2271" /note="YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases...; Region: YlqF; cd01856" /db_xref="CDD:57927" misc_feature order(2371660..2371665,2371669..2371674,2371747..2371755, 2371855..2371875,2371990..2371992) /locus_tag="Alide2_2271" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:57927" misc_feature 2371660..2371671 /locus_tag="Alide2_2271" /note="G4 box; other site" /db_xref="CDD:57927" misc_feature 2371747..2371755 /locus_tag="Alide2_2271" /note="G5 box; other site" /db_xref="CDD:57927" misc_feature 2371849..2371872 /locus_tag="Alide2_2271" /note="G1 box; other site" /db_xref="CDD:57927" misc_feature 2371924..2371947 /locus_tag="Alide2_2271" /note="Switch I region; other site" /db_xref="CDD:57927" misc_feature 2371933..2371935 /locus_tag="Alide2_2271" /note="G2 box; other site" /db_xref="CDD:57927" misc_feature 2371981..2371992 /locus_tag="Alide2_2271" /note="G3 box; other site" /db_xref="CDD:57927" misc_feature 2371987..2371995 /locus_tag="Alide2_2271" /note="Switch II region; other site" /db_xref="CDD:57927" gene complement(2372530..2374359) /locus_tag="Alide2_2272" /db_xref="GeneID:10483316" CDS complement(2372530..2374359) /locus_tag="Alide2_2272" /inference="similar to AA sequence:KEGG:Dtpsy_1352" /note="KEGG: dia:Dtpsy_1352 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388156.1" /db_xref="GI:330824853" /db_xref="GeneID:10483316" /translation="MPATPPIDSAEPGTDALCEDGLPEDATLCPGEAMDATALRQLLK AALPDSSRHKAAGWFGQTDFLFTRSHVDEDQDTYHNGLFITIWKRWDFWLALPHDDPA AHASLFTQAWALLRQPAAPTVTDGLVRQYRGYGATGGPGPWQGLHDAPPEALQACAEA WRGVIGYWRRAEAQRRAGRPLRARLHAALTPERVRALTLLPVFTGRYNDWWNPERNGW WEGDVWIGARQPGQQSGRSWGRALKLSWRNGSEAPGDAEDDAHACYQIDLVDDDAPHE GTSHPPGLRLSYAQRQSDARQSLPNDAVDHMARLLRLFTTLEQRLYAEHACAQQAPPP DDQPAPPLPRTPPFAPDEPDAEVFGAQIMALSNDWQRAGRAHAALVRERWALQAERMA EPPAQDDGGAAAMPAIVDPRGAQAGAVLQLARAVHAWADADLSARFHRRFAFAPGALA YRAAHVGRAVGPVLWQADGRLLAHVSAAHGAQAGAWWEVGADGLHIAPAPQAAPAAHG NEAQDAVTAAAHGLTVRGDADGDLHGLAEDGRTLWRHHIGGAIRSIAMAPDGHALAVG TAGGYLVLLRKGSGIDPYLPGTSRYAEVRRFIFWDDAPAPLAW" gene complement(2374406..2375176) /locus_tag="Alide2_2273" /db_xref="GeneID:10483317" CDS complement(2374406..2375176) /locus_tag="Alide2_2273" /inference="protein motif:PFAM:PF00849" /note="KEGG: dia:Dtpsy_1355 pseudouridine synthase; manually curated; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F" /codon_start=1 /transl_table=11 /product="pseudouridine synthase" /protein_id="YP_004388157.1" /db_xref="GI:330824854" /db_xref="GO:0003723" /db_xref="GO:0009982" /db_xref="InterPro:IPR006145" /db_xref="GeneID:10483317" /translation="MTPDATPPLHLLWQDEHMVALYKPAGWLVHRTGLDAGETRFVVQ ALRDQIGRHVYPVHRLDKGTCGVLVMGLHPAAARALAGSFARHAVHKRYLALVRGWAP PLADVDHPLRPDDAPQDAPAQPAHTLLTRLARLELPESSDPRFATTRASLVLAEPTTG RRHQIRRHLKHAAHPILGDATHGKGPLNRWWAERLGLQRLWLHAWRLRLPHPQDGRMV TIDSGLPWPPAAAPLPCAPDAPWRDWQARVLALPWMAA" misc_feature complement(2374505..2375152) /locus_tag="Alide2_2273" /note="PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of...; Region: PseudoU_synth; cl00130" /db_xref="CDD:193668" misc_feature complement(order(2374679..2374681,2374994..2375005)) /locus_tag="Alide2_2273" /note="active site" /db_xref="CDD:73252" gene complement(2375173..2375466) /locus_tag="Alide2_2274" /db_xref="GeneID:10483318" CDS complement(2375173..2375466) /locus_tag="Alide2_2274" /inference="similar to AA sequence:KEGG:Dtpsy_1356" /note="KEGG: dia:Dtpsy_1356 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388158.1" /db_xref="GI:330824855" /db_xref="GeneID:10483318" /translation="MGLDQIAIALLGATAAWLSQTRSALLRRWACIFGLLGQPFWFYA SWKAGQWGIFALSIVYLGAWLHGLKVYWLTPRRNRDAPDTGLSTIQFTPGRDS" gene 2375570..2376496 /locus_tag="Alide2_2275" /db_xref="GeneID:10483319" CDS 2375570..2376496 /locus_tag="Alide2_2275" /inference="protein motif:PFAM:PF02272" /note="PFAM: Phosphoesterase, DHHA1; KEGG: ajs:Ajs_2502 phosphoesterase, DHHA1" /codon_start=1 /transl_table=11 /product="phosphoesterase DHHA1" /protein_id="YP_004388159.1" /db_xref="GI:330824856" /db_xref="GO:0003676" /db_xref="InterPro:IPR003156" /db_xref="GeneID:10483319" /translation="MMMSPRSAILPLPLLAAPRADDPRPLVLYHGRCADGFAAALAAW RFYGGQVQCLGLSHGQAATVDDLPPLEGRAVYVLDFSFAPALLAEIDARAARLVLLDH HKSAAEQLAGFACRCGAVHFDMAKSGARLAWEFFHPDAPLPDLVRHVEDRDLWTWQYP ETAGFVAALDMEPFDFARWSAIADFSPAETAAFVARGQAMDEKFRHLAQDVAGGARPL AFNGEAGLMVNAPGAFHSLVGELLSRQSGTYALMWAVGGDGQVKVGLRSQRGYDCSPL AVSMGGGGHAQACGFRMPAERLAELLSGSFDS" misc_feature 2375648..2376448 /locus_tag="Alide2_2275" /note="Predicted phosphohydrolase (DHH superfamily) [General function prediction only]; Region: COG2404" /db_xref="CDD:32540" gene complement(2376547..2377782) /locus_tag="Alide2_2276" /db_xref="GeneID:10483320" CDS complement(2376547..2377782) /locus_tag="Alide2_2276" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: aav:Aave_2285 major facilitator superfamily transporter" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004388160.1" /db_xref="GI:330824857" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10483320" /translation="MTDSPADSNVYRHAGFIAFLTARLVAVFATQVQAVVVAWQVYDL TRAPMALAYVGLAQFLPMLVLLLPAGDLIDRFSRKPILAASWAAGTVCSALLWWLAGH GAAGVDGIYAVLVLFGCSRAFSAPALSSLLPQIVPRGQLAQAVAANGMIMRMATIGGP FLGGVLYAVGGARLAYAVCMACFALGTLLLARVAVDHAAPIGPALGSMFQRFGAGIRF IRSRPIILGTISLDLFAVLLGGVVALLPIYAQEVLHVGPQGLGALRSAMAIGEVGAGL YLSMRPFDHRVGRTMFAAVAVFGLANLVFSLSTVFALSFAALMVAGAADMVSVYIRGA LVQFSTPDEMRGRVNAVNMLFIGSSNELGEFRAGTSAAWVGAVPAAVLGGLCTLGVVG LWARLFPTLRRVDKFEEAA" misc_feature complement(2376568..2377749) /locus_tag="Alide2_2276" /note="enterobactin exporter EntS; Provisional; Region: PRK10489" /db_xref="CDD:182495" misc_feature complement(2376694..2377659) /locus_tag="Alide2_2276" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(2376703..2376705,2376712..2376717, 2376724..2376729,2376736..2376741,2376772..2376774, 2376781..2376786,2376796..2376798,2376805..2376810, 2376817..2376819,2376961..2376963,2376970..2376972, 2376979..2376981,2376991..2376993,2377003..2377005, 2377045..2377047,2377054..2377059,2377066..2377071, 2377078..2377080,2377315..2377317,2377333..2377338, 2377345..2377350,2377384..2377386,2377393..2377398, 2377405..2377410,2377417..2377422,2377573..2377578, 2377582..2377587,2377597..2377599,2377606..2377611, 2377618..2377620)) /locus_tag="Alide2_2276" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(2377824..2378249) /locus_tag="Alide2_2277" /db_xref="GeneID:10483321" CDS complement(2377824..2378249) /locus_tag="Alide2_2277" /inference="protein motif:PFAM:PF00565" /note="KEGG: ajs:Ajs_2501 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like)" /codon_start=1 /transl_table=11 /product="nuclease" /protein_id="YP_004388161.1" /db_xref="GI:330824858" /db_xref="GO:0003676" /db_xref="InterPro:IPR006021" /db_xref="GeneID:10483321" /translation="MPAAASALLCLVIAIGDGDSLTVRCGEHRPMRVRVAAIDAPERR QAFGQRARQNLALLCFRQQARLHTLGHDAYGRTLAHVRCSGQDVAAAQVRAGLAWVYR AGNRDLEQLERHARESRAGLWSQKRPMAPWDYRRRHQRD" misc_feature complement(2377875..2378222) /locus_tag="Alide2_2277" /note="Staphylococcal nuclease homologues; Region: SNc; smart00318" /db_xref="CDD:128613" misc_feature complement(2377875..2378207) /locus_tag="Alide2_2277" /note="Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds; Region: SNc; cl00140" /db_xref="CDD:193675" misc_feature complement(order(2378022..2378024,2378028..2378033, 2378124..2378126,2378133..2378135,2378151..2378153, 2378193..2378195)) /locus_tag="Alide2_2277" /note="Catalytic site; other site" /db_xref="CDD:29137" gene 2378348..2379223 /locus_tag="Alide2_2278" /db_xref="GeneID:10483322" CDS 2378348..2379223 /locus_tag="Alide2_2278" /inference="protein motif:TFAM:TIGR00688" /note="TIGRFAM: RarD protein; KEGG: dia:Dtpsy_1360 RarD protein, DMT superfamily transporter" /codon_start=1 /transl_table=11 /product="RarD protein, DMT superfamily transporter" /protein_id="YP_004388162.1" /db_xref="GI:330824859" /db_xref="GO:0005215" /db_xref="InterPro:IPR004626" /db_xref="GeneID:10483322" /translation="MFKGLAASVAASVLFGALYYLAPLLAPLDGEQIFGWRVLCTLPF TTVLLLAQGQWPRVRLLALRAWREPLLALGLAGSAAMLGVQLWLFLWAPLHGRALPVS LGYFLLPLVMVLAGRVLYRERLSRLQWLATLLAAAGVAHEVLRAGGMSWETWLVALGY TVYFVARRRMRTDHLGGHWLDMLLLVPAALWFVLRAPSSLPLVADNAHLWALVPVLGV VSAVALALYMAASRLLPLGLFGLLSYVEPVLLALVALLLGESIGAAQWPTYGPIFAAV AVLVVDGALRLRQRG" misc_feature 2378348..2379163 /locus_tag="Alide2_2278" /note="Predicted permeases [General function prediction only]; Region: RarD; COG2962" /db_xref="CDD:32782" gene complement(2379257..2379823) /locus_tag="Alide2_2279" /db_xref="GeneID:10483323" CDS complement(2379257..2379823) /locus_tag="Alide2_2279" /inference="protein motif:TFAM:TIGR00093" /note="KEGG: dia:Dtpsy_1363 pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F" /codon_start=1 /transl_table=11 /product="pseudouridine synthase Rsu" /protein_id="YP_004388163.1" /db_xref="GI:330824860" /db_xref="GO:0003723" /db_xref="GO:0016866" /db_xref="InterPro:IPR000748" /db_xref="InterPro:IPR006145" /db_xref="GeneID:10483323" /translation="MKARARLIRFNKPYGVLSQFTPEGRWRGLKDFIDLPGVYVAGRL DADSEGLLLLTDSGPLQARISDPRHKMEKTYWVQVEGIPDDAALAALQRGITLNDGPT RPARVHRLEPPPALCPRDPPIRVRRNIPDSWIELVIREGRNRQVRRMTAAVGHPTLRL VRTAIGPYTLDGLAPGAWDDIETIAAGA" misc_feature complement(2379305..2379805) /locus_tag="Alide2_2279" /note="PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of...; Region: PseudoU_synth; cl00130" /db_xref="CDD:193668" misc_feature complement(order(2379383..2379385,2379689..2379700)) /locus_tag="Alide2_2279" /note="active site" /db_xref="CDD:73252" gene complement(2379820..2380650) /locus_tag="Alide2_2280" /db_xref="GeneID:10483324" CDS complement(2379820..2380650) /locus_tag="Alide2_2280" /inference="protein motif:PFAM:PF01551" /note="PFAM: Peptidase M23; KEGG: ajs:Ajs_2496 peptidase M23B" /codon_start=1 /transl_table=11 /product="peptidase M23" /protein_id="YP_004388164.1" /db_xref="GI:330824861" /db_xref="InterPro:IPR016047" /db_xref="GeneID:10483324" /translation="MLRGLGLALLPGPAVLARAATAPDAWPQALQVPGGVARLQLGPA PERPVVHAGDVPVLVLGDSIAWMALVGIPLSAPVGQAHVTVQAAAGAPGRRIAYRVAP KQYREQRLTVAPRTVDLAPEDLARHERERAHQQQIMATFSTPLPDELQMRQPVPGPRS SSFGLRRVFNGQARNPHSGMDIAAATGTPIVAPLPGRVIDVGDYFFNGGTVWLDHGGG LLTMYCHLSRVDCQVGDRLRTGDAFCKVGATGRVTGPHLHWGVMLNRTMVDPALFLPA " sig_peptide complement(2380591..2380650) /locus_tag="Alide2_2280" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.982 at residue 20" misc_feature complement(2379826..>2380413) /locus_tag="Alide2_2280" /note="Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739" /db_xref="CDD:31082" misc_feature complement(2379841..2380125) /locus_tag="Alide2_2280" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene 2380923..2382326 /locus_tag="Alide2_2281" /db_xref="GeneID:10483325" CDS 2380923..2382326 /locus_tag="Alide2_2281" /EC_number="4.3.1.1" /inference="protein motif:PRIAM:4.3.1.1" /note="KEGG: dia:Dtpsy_1365 fumarate lyase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal" /codon_start=1 /transl_table=11 /product="aspartate ammonia-lyase" /protein_id="YP_004388165.1" /db_xref="GI:330824862" /db_xref="InterPro:IPR018951" /db_xref="InterPro:IPR022761" /db_xref="GeneID:10483325" /translation="MRQEHDFIGIKTIPPDAYWGVHTARAVENFPITGHTVAQMPALI RAFAFVKKAAAHANLQLGAISTTQADAIAKACDDLIAGQLHEQFVTDVIQGGAGTSTN MNANEVIANRALEHLGLPKGSYDVIHPNDHVNASQSTNDTYPTAVKIATYFGIQELLG ALAALRGAFEAKALEFAGILKIGRTQLQDAVPMTLGQEFAAFASMIADDERRLRESAY LMAEVNMGGTAIGTGINAPLGYVDAVVPKLAELSGVPVRAAANLIAATSDTGAFVDIS GVLKRIAAKLSKISNDLRLLSSGPQAGVADIRLPARQAGSSIMPGKVNPVIPEAMNQV CFEVIGNDAAITMACEAGQLQLNAFEPLVAWALHKSLHHLARACRTLQVNCVEGIAAN QGLLDERIAASVTLVTALNPVIGYEKAAAIAKAAIATGKPIAEVAEDLGIMGRAEMQK LLVAERLTQAGAIKAVH" misc_feature 2380923..2382305 /locus_tag="Alide2_2281" /note="aspartate ammonia-lyase; Provisional; Region: aspA; PRK12273" /db_xref="CDD:183393" misc_feature 2380926..2382278 /locus_tag="Alide2_2281" /note="Aspartase; Region: Aspartase; cd01357" /db_xref="CDD:176462" misc_feature order(2381208..2381219,2381334..2381342,2381475..2381480, 2381886..2381888,2381892..2381894,2381907..2381909) /locus_tag="Alide2_2281" /note="active sites [active]" /db_xref="CDD:176462" misc_feature order(2381472..2381483,2381493..2381495,2381511..2381516, 2381532..2381534,2381544..2381546,2381556..2381558, 2381610..2381612,2381700..2381705,2381712..2381714, 2381721..2381726,2381730..2381732,2381739..2381744, 2381751..2381753,2381760..2381765,2381772..2381777, 2381781..2381786,2381793..2381798,2381946..2381948, 2381970..2381972,2381979..2381987,2382144..2382146) /locus_tag="Alide2_2281" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176462" gene complement(2382399..2383205) /locus_tag="Alide2_2282" /db_xref="GeneID:10483326" CDS complement(2382399..2383205) /locus_tag="Alide2_2282" /inference="protein motif:PFAM:PF03724" /note="PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: dac:Daci_2483 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388166.1" /db_xref="GI:330824863" /db_xref="InterPro:IPR005184" /db_xref="GeneID:10483326" /translation="MNDKQALKTLAALALAALVGACASAPPQTPAPMPSTTAQNGAPS LASHDWNLTAAFDAQGRSDGSWLLAGHTPMQLHFEGQRLSVRNLCNMLGASFGTQGGD MQLGRPVSTMRACADKDLMRLEQRVGAQLPTVTRYQLNAGGTPQLQLFFADGSRWELA GQPTPQTQYGGPGERMFLEVAPERVACSHGVMKNAQCLRVREIRYGDNGAKTHVGQWQ VFYDEVQGYTHEPGMRNVLRINRFKRQNPPADASAYVYMLDMVVESERMK" sig_peptide complement(2383131..2383205) /locus_tag="Alide2_2282" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.626 at residue 25" misc_feature complement(2382756..2383073) /locus_tag="Alide2_2282" /note="META domain; Region: META; cl01245" /db_xref="CDD:194076" gene complement(2383271..2383810) /locus_tag="Alide2_2283" /db_xref="GeneID:10483327" CDS complement(2383271..2383810) /locus_tag="Alide2_2283" /inference="protein motif:PFAM:PF06041" /note="PFAM: Protein of unknown function DUF924; KEGG: hel:HELO_3084 protein of unknown function DUF924" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388167.1" /db_xref="GI:330824864" /db_xref="InterPro:IPR010323" /db_xref="GeneID:10483327" /translation="MTPESILHFWFEELSAPQHFAKDAALDAAIARRFGATLQAAASG ELSGWRQSARGRLAEIVVLDQFSRNVYRDTPRAFAQDGMALVLAQELVASGQAGALPP AQRAFAYMPYMHSESRVVQAQSVRLFAEPGLEGNLPFALQHRAIIERFGRYPHRNAIL GRESSGEELAFLREPGSSF" misc_feature complement(2383280..2383795) /locus_tag="Alide2_2283" /note="Bacterial protein of unknown function (DUF924); Region: DUF924; cl01561" /db_xref="CDD:194164" gene complement(2383828..2385639) /locus_tag="Alide2_2284" /db_xref="GeneID:10483328" CDS complement(2383828..2385639) /locus_tag="Alide2_2284" /EC_number="6.1.1.18" /inference="protein motif:TFAM:TIGR00440" /note="TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; KEGG: ajs:Ajs_1608 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain" /codon_start=1 /transl_table=11 /product="glutaminyl-tRNA synthetase" /protein_id="YP_004388168.1" /db_xref="GI:330824865" /db_xref="GO:0000166" /db_xref="GO:0004819" /db_xref="GO:0005524" /db_xref="InterPro:IPR004514" /db_xref="InterPro:IPR020058" /db_xref="InterPro:IPR020059" /db_xref="GeneID:10483328" /translation="MSTPVHNDSTDTVKPSNFLRQIIEADLAQGTHARNRWAGSPGDA AHQGAGPADPAKIRTRFPPEPNGYLHVGHAKSICLNFGLARDYGGVCHLRFDDTNPEK EDQEYVDGIIDAVHWLGFDWKDPDGHENLYYASNYFGFMYRAAEYLIEAGHAYVDEQT PEEMRANRGDFGRPGVDSPYRSRTPAENLARFRDMKDGKLPDGAAVLRAKIDMASPNI NLRDPAIYRIKHAEHHNTGNAWCIYPMYTFAHPVEDALECITHSICTLEFEDQRPFYD WLLDRLAEGGLIATPQPRQYEFARLNLTYVVTSKRKLKHLVDNGIVSGWDDPRMPTIV GLRRRGYTPESIQMFCERIGVTKDYSWIDYATLEGCLREDLEAKAHRAMVALDPLRLE LTNWAEVFGSADHLEHCSLPALPHSHDGAHEGAPERRFTLGREVWIEREDFEEVPPKG YKRLFPGNRVRLKGGYVIECTGCEKDAEGRVAKVLATVVPDTKSGTPGADSVKVKAAI TWVGVQDGLQAEVRLYDRLFTDAQPDAGGKDFLALLNPDSLKVVNAYVEPSLAAARPD GKFQFERFGYFVADRKDHAPGRPVFNRITGLKDSWGK" misc_feature complement(2383831..2385621) /locus_tag="Alide2_2284" /note="glutaminyl-tRNA synthetase; Provisional; Region: PRK05347" /db_xref="CDD:180031" misc_feature complement(<2385106..2385474) /locus_tag="Alide2_2284" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(2385421..2385432) /locus_tag="Alide2_2284" /note="active site" /db_xref="CDD:173912" misc_feature complement(2385421..2385432) /locus_tag="Alide2_2284" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature complement(order(2385421..2385423,2385430..2385432)) /locus_tag="Alide2_2284" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(2384497..>2384943) /locus_tag="Alide2_2284" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(2384704..2384715) /locus_tag="Alide2_2284" /note="active site" /db_xref="CDD:173912" misc_feature complement(2384704..2384715) /locus_tag="Alide2_2284" /note="KMSKS motif; other site" /db_xref="CDD:173912" misc_feature complement(2383900..2384505) /locus_tag="Alide2_2284" /note="tRNA synthetases class I (E and Q), anti-codon binding domain; Region: tRNA-synt_1c_C; pfam03950" /db_xref="CDD:190806" gene 2385779..2386117 /locus_tag="Alide2_2285" /db_xref="GeneID:10483329" CDS 2385779..2386117 /locus_tag="Alide2_2285" /inference="similar to AA sequence:KEGG:Dtpsy_2105" /note="KEGG: dia:Dtpsy_2105 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388169.1" /db_xref="GI:330824866" /db_xref="GeneID:10483329" /translation="MTQRRSWFAVAASAGVALALMAGAGAAQARSDVYWSVGVGAPGV ALGVGNAAPVYYAPPPPVYYAPPPVVYAPPRPVYYAPPPPVVYVPPVGYYQRGWGGHH HHHHGRRDWR" sig_peptide 2385779..2385868 /locus_tag="Alide2_2285" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.774 at residue 30" gene 2386226..2386675 /locus_tag="Alide2_2286" /db_xref="GeneID:10483330" CDS 2386226..2386675 /locus_tag="Alide2_2286" /EC_number="4.2.1.10" /inference="protein motif:TFAM:TIGR01088" /note="TIGRFAM: Dehydroquinase, class II; KEGG: ajs:Ajs_1610 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II" /codon_start=1 /transl_table=11 /product="3-dehydroquinate dehydratase" /protein_id="YP_004388170.1" /db_xref="GI:330824867" /db_xref="GO:0003855" /db_xref="InterPro:IPR001874" /db_xref="GeneID:10483330" /translation="MTTKTVYVLNGPNLNLLGTREPQVYGSQTLADVEQICAAACTRH GLALVFRQSNHEGALVDWIHEAGRLHAEGKLAGVVLNAAAYTHTSVALLDAVKGTGVP LVELHISNVHARESFRHRSYLAGAARAVMCGFGVQGYALAIAGVAQW" misc_feature 2386238..2386669 /locus_tag="Alide2_2286" /note="Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway...; Region: DHQase_II; cd00466" /db_xref="CDD:63885" misc_feature order(2386262..2386264,2386268..2386270,2386385..2386399, 2386406..2386408,2386415..2386417,2386475..2386477, 2386496..2386498,2386505..2386510,2386517..2386519, 2386577..2386579) /locus_tag="Alide2_2286" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:63885" misc_feature order(2386283..2386285,2386298..2386300,2386466..2386468, 2386472..2386477,2386484..2386486,2386505..2386507, 2386544..2386552,2386577..2386579) /locus_tag="Alide2_2286" /note="active site" /db_xref="CDD:63885" misc_feature order(2386553..2386555,2386559..2386564,2386595..2386600, 2386604..2386615,2386619..2386627,2386634..2386636, 2386646..2386648,2386658..2386660,2386667..2386669) /locus_tag="Alide2_2286" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:63885" gene 2386669..2387562 /locus_tag="Alide2_2287" /db_xref="GeneID:10483331" CDS 2386669..2387562 /locus_tag="Alide2_2287" /inference="protein motif:PFAM:PF00561" /note="PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_2103 alpha/beta hydrolase fold protein" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004388171.1" /db_xref="GI:330824868" /db_xref="InterPro:IPR000073" /db_xref="GeneID:10483331" /translation="MVTARALATLPVPAQVLALERQARRETTPCGAGDMVWHAWGTPR DGVPPLVLLHGGSGSWTHWVRNIADLMDAGRELWIPDLPGFGDSASPASGGDADALAG PMAEGLRTLFGPRQCDLVGFSFGGLTAGLLLAAHPEVARQLVVVGAPAMGVVPQRQVA LKAWRHLPEAAQIAAHRYNLAALMLKDEALIDALDGLALGLHVANVVRDRMPRRRLAH TDALARALSRVDCPVHAIYGRSDALYKEWIGALEGAYAAAAPDFRGLALIDDAGHWVQ FERPQAFMQALLAALRAGAGK" misc_feature 2386816..2387517 /locus_tag="Alide2_2287" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 2387559..2387984 /locus_tag="Alide2_2288" /db_xref="GeneID:10483332" CDS 2387559..2387984 /locus_tag="Alide2_2288" /inference="protein motif:PFAM:PF00472" /note="PFAM: Peptide chain release factor class I/class II; KEGG: dia:Dtpsy_2102 class I peptide chain release factor" /codon_start=1 /transl_table=11 /product="Class I peptide chain release factor" /protein_id="YP_004388172.1" /db_xref="GI:330824869" /db_xref="GO:0003747" /db_xref="InterPro:IPR000352" /db_xref="GeneID:10483332" /translation="MTERHCPPALRVDPAEVELTAMRAQGAGGQNVNKVSSAVHLRFD IVASSLPGDVKQRLLALRDSRITQQGVLVIKAQQYRTQEANRLDALARLQALVDSVAR PPRVRRATRPTLGSQQRRLEAKSRRAGIKALRGRTAAPD" misc_feature 2387580..2387966 /locus_tag="Alide2_2288" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" gene 2388086..2388922 /locus_tag="Alide2_2289" /db_xref="GeneID:10483333" CDS 2388086..2388922 /locus_tag="Alide2_2289" /inference="protein motif:PFAM:PF02900" /note="PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B" /codon_start=1 /transl_table=11 /product="extradiol ring-cleavage dioxygenase class III protein subunit B" /protein_id="YP_004388173.1" /db_xref="GI:330824870" /db_xref="GO:0008198" /db_xref="GO:0016491" /db_xref="InterPro:IPR004183" /db_xref="GeneID:10483333" /translation="MTTDTVSPSTGPGALPALFVSHGAPLFALEPGSTGPALARWAAG LRRSHPGLRGVVIMSPHWMERGATVMTGARPATWHDFGGFPPALYALQYPAAGDPALA GQVLDLLRQAGIAAQGDAERPFDHGAWVPLMHLFPQADLPVVQVALPVGAGPAEVHAM GAALHGLRAQGVLVVGSGSMTHNLREFFGGGHERAPYVLEFSRWIEAAVERGDLPALL DYRRQAPHAQRAHPTEDHFLPLFFALGVAGEGWGAEYLSREVMYGMLAMDAFALHAPA AA" misc_feature 2388131..2388901 /locus_tag="Alide2_2289" /note="The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine; Region: 45_DOPA_Dioxygenase; cd07363" /db_xref="CDD:153375" misc_feature 2388131..2388829 /locus_tag="Alide2_2289" /note="Catalytic LigB subunit of aromatic ring-opening dioxygenase; Region: LigB; pfam02900" /db_xref="CDD:111754" misc_feature order(2388149..2388157,2388266..2388268,2388461..2388463, 2388629..2388631,2388791..2388793,2388875..2388880) /locus_tag="Alide2_2289" /note="putative active site [active]" /db_xref="CDD:153375" misc_feature order(2388149..2388151,2388266..2388268,2388791..2388793) /locus_tag="Alide2_2289" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:153375" gene 2388919..2389614 /locus_tag="Alide2_2290" /db_xref="GeneID:10483334" CDS 2388919..2389614 /locus_tag="Alide2_2290" /inference="protein motif:PFAM:PF02230" /note="PFAM: Phospholipase/carboxylesterase; KEGG: vei:Veis_2297 phospholipase/carboxylesterase" /codon_start=1 /transl_table=11 /product="phospholipase/carboxylesterase" /protein_id="YP_004388174.1" /db_xref="GI:330824871" /db_xref="GO:0016787" /db_xref="InterPro:IPR003140" /db_xref="GeneID:10483334" /translation="MIAPLHRDTPAMLDLPFTCLHRPANSAVRHPWLLVLMHGVGSNE HDLFGLTPQIPEHFHVLSLRAPFRMGPGAFAWFDFSIEPGGERTIDEAQEAHSRALLE QAVPSAARQLGVEPGRTVVGGFSQGGIMALSLLLTRPGLMHAGLVWHGRLLAQAVPYI ASADAFHGKHLRVSHGTHDNVIPLAHAQAIRRQVQALPLHLSYEEFAGAHEIRQAELA HTVAWLQGLSGAA" misc_feature 2389015..2389605 /locus_tag="Alide2_2290" /note="Predicted esterase [General function prediction only]; Region: COG0400" /db_xref="CDD:30749" misc_feature 2389015..>2389509 /locus_tag="Alide2_2290" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 2389795..2390673 /locus_tag="Alide2_2291" /db_xref="GeneID:10483335" CDS 2389795..2390673 /locus_tag="Alide2_2291" /inference="similar to AA sequence:KEGG:Ajs_1615" /note="KEGG: ajs:Ajs_1615 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388175.1" /db_xref="GI:330824872" /db_xref="GeneID:10483335" /translation="MPERDPAEYRPRPESSTSWAVAAVVAAAVAAGAAWWFWWRLAQA PAPVVAPPPDAAASAPMAEASGPQHPIAAQADAGPLPPLAESDAWVAKALGELLGAER VGRFLLTDGFVRRAVATVDNLPRAQAPARLWPVQPAPQRFLVEGPPGAQAIAPANAAR YQAFVAFAEAVPPDAAVALYARLYPLFQAAYEELGYPGKYFNDRLVAVLDHLLAAPAP QGPLAVQLTQVRGEVPSTRPWVRYEFADPQLEALSSGQKMLVRMGPDNARRLKAVLAE LRRRVVTGEVARRPAE" misc_feature 2390125..2390631 /locus_tag="Alide2_2291" /note="Protein of unknown function (DUF3014); Region: DUF3014; pfam11219" /db_xref="CDD:151661" gene complement(2390692..2391162) /locus_tag="Alide2_2292" /db_xref="GeneID:10483336" CDS complement(2390692..2391162) /locus_tag="Alide2_2292" /inference="protein motif:PFAM:PF01037" /note="KEGG: ajs:Ajs_1616 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type" /codon_start=1 /transl_table=11 /product="AsnC family transcriptional regulator" /protein_id="YP_004388176.1" /db_xref="GI:330824873" /db_xref="GO:0003700" /db_xref="GO:0043565" /db_xref="InterPro:IPR019887" /db_xref="InterPro:IPR019888" /db_xref="GeneID:10483336" /translation="MKLDALDLRILAELQADGSLSNVELARRVHLSPSPCLARVKALE AAGVIQRYVALANPAALGLGLNVFISISLKSQSKEALAAFEQRIAEHDPVMECYLMTG DSDYLIRVALPDIAALERFILEQLTPIPGIEKIRTSFTLKQVRYKTALPLPAAR" misc_feature complement(2390707..2391162) /locus_tag="Alide2_2292" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(2390830..2391156) /locus_tag="Alide2_2292" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 2391266..2393893 /locus_tag="Alide2_2293" /db_xref="GeneID:10483337" CDS 2391266..2393893 /locus_tag="Alide2_2293" /EC_number="1.2.4.1" /inference="protein motif:TFAM:TIGR00759" /note="TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; Alpha-ketoglutarate dehydrogenase; KEGG: ajs:Ajs_1617 2-oxoacid dehydrogenase subunit E1; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain" /codon_start=1 /transl_table=11 /product="2-oxo-acid dehydrogenase E1 subunit" /protein_id="YP_004388177.1" /db_xref="GI:330824874" /db_xref="GO:0016491" /db_xref="InterPro:IPR004660" /db_xref="InterPro:IPR005474" /db_xref="InterPro:IPR005475" /db_xref="InterPro:IPR017600" /db_xref="GeneID:10483337" /translation="MNAPHPPFALRDDADPQETAEWRDAFLALVAAEGPGRARFVLDE LARLARAQRVGWRPDLNTPYVNTVAAQDQPAFPGDLAIEERLASIMRWNALAMVVRAN QAYGELGGHIASYASAADLFETGFNHFFHAREGLGAGQHRGDLVFFQPHSAPGVYARA FLEGRLSEQDLMHYRQEITAPQARARGLSSYPHPWLMPDFWQFPTGSMGIGPISSIYH ARFMRYLTHRNLLDCTGRKVWGVFGDGEMDEPESMSALTLAAREGLDNLVWVVNCNLQ RLDGPVRGNGRIVDELERLFAGAGWNVVKLLWGSDWDGLFARDLTGTLARTLGTTVDG QMQTFAAKDGRFNRDHFFGQNPELAALAQGLTDEQIDRLKRGGHDLVKIHAAYAAAAA HRGQPTVILAHTKKGYGMGQAGQGKMTTHSQKKLDDADLIEFRNRFNLPLTDEQATGL AFYKPLDDSPEMQYLRSHRRRLGGWLPRRETACDALPVPPLEQYAQFALAADGKEMST TMAFVRMLGALLKDATLGPRIVPIVADEARTFGMANLFKQVGIYSSVGQRYAPEDIGS VLSYREALDGQILEEGISEAGAIASWTAAATSYSVHGLAMLPFYIYYSMFGFQRVGDA IWAAADQRARGFLLGATSGRTTLGGEGLQHQDGSSHLVAATIPNCKAYDPAHAGELSV ILDAGMREMMVEQKDVFYYVTLMNENYAQPDLPAAAHEGVLRGCYVLNSCQRLLDKPE SPISCEKHVTLLGSGAILTEAARAAALLAAEGIAATVVSVTSWSELARDGMACEQGGG TPWIARVLAGTRGPIVAATDYVRAVPESVRAYLPEGRRYRTLGTDGFGRSDTRAALRG FFGVDAARIAQAAREALAS" misc_feature 2391266..2393848 /locus_tag="Alide2_2293" /note="2-oxoacid dehydrogenase subunit E1; Provisional; Region: PRK13012" /db_xref="CDD:183840" misc_feature 2391503..2392687 /locus_tag="Alide2_2293" /note="Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative...; Region: TPP_E1_EcPDC_like; cd02017" /db_xref="CDD:48180" misc_feature order(2391581..2391589,2391788..2391799,2391833..2391838, 2391842..2391844,2391848..2391850,2391875..2391877, 2391881..2391889,2392007..2392018,2392025..2392027, 2392034..2392036,2392046..2392048,2392094..2392102, 2392112..2392114,2392136..2392138,2392145..2392150, 2392157..2392159) /locus_tag="Alide2_2293" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48180" misc_feature order(2391605..2391607,2391710..2391712,2391716..2391718, 2391881..2391883,2391887..2391889,2391995..2392003, 2392010..2392012,2392085..2392087,2392091..2392093, 2392481..2392483) /locus_tag="Alide2_2293" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48180" gene complement(2393910..2395193) /locus_tag="Alide2_2294" /db_xref="GeneID:10483338" CDS complement(2393910..2395193) /locus_tag="Alide2_2294" /inference="protein motif:PFAM:PF01425" /note="PFAM: Amidase; KEGG: bpt:Bpet0082 putative amidase" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="YP_004388178.1" /db_xref="GI:330824875" /db_xref="GO:0003747" /db_xref="InterPro:IPR000120" /db_xref="GeneID:10483338" /translation="MESPNRLSVLQALRAMAEGSLTSEALTQACLERIEERNGQVLAF TAVDAGWALAQARAADRGGGAPLRGIPFAVKDVLDTRHLATAYGSPIYAGHRPVADAA CVARVREFGGLVLGKAATSEFATQTPSRTRNPLNLEHTPGGSSSGSAAAVADFMAPVA FGTQTTASTVRPASYCGIVGYKPTFGFLNTAGLKPLSPSQDTITLLARTVQDAALCAF GLHGMRVQAGPLERPRLAVCLSSQWDAVRPEMAEAIERIAAAAQRAGATVRRMRLPAA LEPLIGMQGRLFAFEARQSLAYERQNHAAQFSPRLQARLAGGEGIDAAQYLAMRQRAL AGRQALADLFGDVDAILYPPAQGEADEGIADSGSAQFGALWSLMHVPCVCVPIARGPR GLPMGVQAIGAYGDDLRTLQAAAFIHHVAQQAELA" misc_feature complement(2393940..2395193) /locus_tag="Alide2_2294" /note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154" /db_xref="CDD:30503" misc_feature complement(2393961..2395121) /locus_tag="Alide2_2294" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene complement(2395202..2396194) /locus_tag="Alide2_2295" /db_xref="GeneID:10483339" CDS complement(2395202..2396194) /locus_tag="Alide2_2295" /inference="similar to AA sequence:KEGG:Aave_3937" /note="KEGG: aav:Aave_3937 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388179.1" /db_xref="GI:330824876" /db_xref="InterPro:IPR005064" /db_xref="GeneID:10483339" /translation="MPLPHSTHRRALLASAILALAATVHAQAPAPADYPVKPVTMVVP FAAGSVTDLLARIVAQRLGDALGQPVVVDNRAGADGNIGAAYAAAAAPDGYTLMMGAA STNAINPSLHKNLKFNAIKDFAPITNVASMPNVLVVGPQVTARSVRDFIQAAKTEKYS FASSGAGGSMHLSGELFKSMAQIPDFLHIPYKGGSAPVTDVMGGRVSAMFCNLPLCLQ HIRAGKLQALGVTSSRRTPLLPEVPTIAESGVPGYEVEGWFGLFAPTGVPRPIIQRLN HEVVRILQDPKVKESLLAQGAEPIGDSPEAFAAFVKKEHDRWARTIREAGIAPQ" sig_peptide complement(2396114..2396194) /locus_tag="Alide2_2295" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 27" misc_feature complement(2395214..2396098) /locus_tag="Alide2_2295" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature complement(2395214..2396032) /locus_tag="Alide2_2295" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2396305..2397222 /locus_tag="Alide2_2296" /db_xref="GeneID:10483340" CDS 2396305..2397222 /locus_tag="Alide2_2296" /inference="protein motif:PFAM:PF03466" /note="PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hmg:100212933 similar to lysR transcriptional regulator" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="YP_004388180.1" /db_xref="GI:330824877" /db_xref="GO:0003700" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="GeneID:10483340" /translation="MLLSRNLLAFIAVAEELHFGRAAQRLHISQPPLSQQIRQFEEEV GAPLLVRTTRSVQLTPAGRLMLERAHLLLAEAGAALHSVRRHAVGDEGVLTLGFTHST VYRVLPKVLHAFRQACPNVVLELRQLTSDLLVQEVRSGRLDVAMLRFSSSMESADLMS RVITHDPMVLVLPLGHPLAAHRRVPVRLLQGLPWVGYEIEGARYFHELEEKVLAGARV RPSVQHRSLLPTLLALVEAGMGAALAPASAAQGGAGRIEWRELSLPEGCAPLDAVLSC VWAADNCNPVVQRFLDCLSDAVLQDEGAG" misc_feature 2396317..2396487 /locus_tag="Alide2_2296" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2396332..2397186 /locus_tag="Alide2_2296" /note="DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986" /db_xref="CDD:182183" misc_feature 2396581..2397186 /locus_tag="Alide2_2296" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature order(2396596..2396598,2396617..2396619,2396626..2396631, 2396635..2396640,2396647..2396649,2396671..2396673, 2396677..2396679,2396683..2396685,2396821..2396823, 2396923..2396928,2396980..2396985,2397001..2397006, 2397010..2397015,2397067..2397069) /locus_tag="Alide2_2296" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature order(2396599..2396601,2396746..2396748,2396893..2396898, 2396917..2396919) /locus_tag="Alide2_2296" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene 2397257..2398036 /locus_tag="Alide2_2297" /db_xref="GeneID:10483341" CDS 2397257..2398036 /locus_tag="Alide2_2297" /inference="protein motif:PFAM:PF07729" /note="KEGG: vap:Vapar_5148 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR" /codon_start=1 /transl_table=11 /product="GntR domain-containing protein" /protein_id="YP_004388181.1" /db_xref="GI:330824878" /db_xref="GO:0003700" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR011711" /db_xref="GeneID:10483341" /translation="MTLQFQPVASGARLADQVADALEAEIRGGRLAPGARLPTEAVLA TQFAVSRTVVREAVSRLKSLGMVDSRQGSGVYVRAAGAEPLRFEAAHLASRDAVVQMA ELRRPLESEVAALAAERRTPQDLARIRAAIGALDEAVAAGQGGAEQDLAFHLAVAEAA HNPFLIGTLQYLHGLLQGAIRVTRANEARRDDFAREVAREHERIAQAIEAGDPVAARE AAKTHMDNAIRRIGQADPAFWRQEGARLAQPLVEGRATRQR" misc_feature 2397284..2397958 /locus_tag="Alide2_2297" /note="Transcriptional regulators [Transcription]; Region: FadR; COG2186" /db_xref="CDD:32369" misc_feature 2397296..2397490 /locus_tag="Alide2_2297" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(2397299..2397301,2397368..2397370,2397374..2397379, 2397401..2397415,2397419..2397424,2397431..2397433, 2397461..2397466,2397470..2397481) /locus_tag="Alide2_2297" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 2397554..2397934 /locus_tag="Alide2_2297" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene 2398189..2399511 /locus_tag="Alide2_2298" /db_xref="GeneID:10483342" CDS 2398189..2399511 /locus_tag="Alide2_2298" /inference="protein motif:PFAM:PF07690" /note="PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1" /codon_start=1 /transl_table=11 /product="major facilitator superfamily protein" /protein_id="YP_004388182.1" /db_xref="GI:330824879" /db_xref="InterPro:IPR011701" /db_xref="GeneID:10483342" /translation="MSSSVSAVLPAAGAEGALEKRAYGKVFWRLVPFLMLCYVVAYLD RVNVGFAKLQMAQDLGFSETVFGLGAGIFFLGYFLFEVPSNLLLHRVGARMWIARIMI TWGILSGCFMFVESPTGFYVLRFLLGVAEAGFYPGVILYLTYWYPAHRRARIIAVFMS AIPVAGIFGNPLSGWIMDAFHGASSLQGWQWMFLIEAVPAVLVGIMVLLYLDNGIQKA RWLTAEEKALLEREIEADHAQGGAQGPHSVAGVFRDMRVWWMALIYFAFVMGQYALTF WMPTLVKATGVQGNFHIGLLSAIPFLCAIVAMNLFGRSADTRRERRWHLIVPSLMGAV GFTVAASYTQNTVVALAFLSLAAAGVLTCAPLFWSLPTAFLSGTAAAAGIAAINSVGN LAGFVSPYLIGYLKDLTGSTQIGMYVLSAVLVLGAIGVWLVPRKLVNR" misc_feature 2398261..2399463 /locus_tag="Alide2_2298" /note="4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332" /db_xref="CDD:131385" misc_feature 2398279..2399490 /locus_tag="Alide2_2298" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(2398321..2398323,2398330..2398338,2398342..2398347, 2398396..2398398,2398405..2398410,2398417..2398419, 2398429..2398434,2398438..2398443,2398579..2398584, 2398591..2398596,2398603..2398608,2398615..2398617, 2398651..2398656,2398663..2398668,2398684..2398686, 2398990..2398992,2398999..2399004,2399011..2399016, 2399023..2399025,2399065..2399067,2399077..2399079, 2399089..2399091,2399098..2399100,2399110..2399112, 2399257..2399259,2399266..2399271,2399278..2399280, 2399290..2399295,2399302..2399304,2399335..2399340, 2399347..2399352,2399359..2399364,2399371..2399373) /locus_tag="Alide2_2298" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 2399523..2400413 /locus_tag="Alide2_2299" /db_xref="GeneID:10483343" CDS 2399523..2400413 /locus_tag="Alide2_2299" /EC_number="1.1.1.31" /inference="protein motif:PRIAM:1.1.1.31" /note="KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="YP_004388183.1" /db_xref="GI:330824880" /db_xref="InterPro:IPR006115" /db_xref="GeneID:10483343" /translation="MSASQPTVGLVGLGAMGLGMAQSLRRAGHAPHVFDLRREVAQDF ARDGGTACETLAELGARCDVVVSVVVNAAQTESVLFGDDGVAATMRPGSLFVMCSTVD PNWSVALESRLAKQGILYLDAPISGGAAKAASGQITMMTAGTPEAYTRAGGVLDAMAA KVYRLGDKAGAGSKVKIINQLLAGVHIAAAAEAMALGLREGVDPAALYEVITHSAGNS WMFENRMAHVLAGDYTPLSAVDIFVKDLGLVLDVARASKFPLPLSSTAHQMFMQASTA GFAREDDSAVIKIFPGITLP" misc_feature 2399586..2400392 /locus_tag="Alide2_2299" /note="3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]; Region: MmsB; COG2084" /db_xref="CDD:32267" misc_feature 2399592..>2400056 /locus_tag="Alide2_2299" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 2400484..2401497 /locus_tag="Alide2_2300" /db_xref="GeneID:10483344" CDS 2400484..2401497 /locus_tag="Alide2_2300" /inference="protein motif:PFAM:PF01370" /note="PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_004388184.1" /db_xref="GI:330824881" /db_xref="GO:0003824" /db_xref="GO:0050662" /db_xref="InterPro:IPR001509" /db_xref="GeneID:10483344" /translation="MNILITGGSGFLGARLARTLLAQGSLALAGAPAQPIERVVLVDR VAPPADLAADARVQPLLGDLVEQLAAGALPLAEVQAVFHLAAAVSGECEADFDLGMRS NLDATRQLLEGCRRAGHAPVFVFSSSVAVFGDSPEQPLPAVIEDTTLPTPQNSYGIQK FIGEQLVADCTRKGFVQGRNVRLMTVSVRPGRPNGAASSFLSGMLREPLAGERARCPV APGTAVALSSPGNTVRGIIRASTASAAEWGARTAVNLPALTTTVGEMAQALERVAGKE ATALIDWEPDAQIARIITGWPSRFAPKRAQALGLAADESFEAILRDYVRENPQAVKLA VKG" misc_feature 2400484..2401461 /locus_tag="Alide2_2300" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature 2400484..2401443 /locus_tag="Alide2_2300" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(2400502..2400504,2400508..2400513,2400517..2400519, 2400604..2400612,2400733..2400741,2400859..2400867, 2400949..2400951,2400961..2400963,2401030..2401041) /locus_tag="Alide2_2300" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(2400790..2400792,2400865..2400867,2400949..2400951, 2400961..2400963) /locus_tag="Alide2_2300" /note="active site" /db_xref="CDD:187535" gene 2401501..2402763 /locus_tag="Alide2_2301" /db_xref="GeneID:10483345" CDS 2401501..2402763 /locus_tag="Alide2_2301" /inference="protein motif:PFAM:PF07005" /note="PFAM: Protein of unknown function, DUF1537; KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers" /codon_start=1 /transl_table=11 /product="type III effector Hrp-dependent outer protein" /protein_id="YP_004388185.1" /db_xref="GI:330824882" /db_xref="InterPro:IPR010737" /db_xref="GeneID:10483345" /translation="MGKLLLGCIADDFTGATDLANNLVRAGMRVVQAIGVPDGPLAAD VDAVVVALKSRTNPVDEAVAQSLAALRWLQGQGAHQIYFKYCSTFDSTPAGNIGPVTE ALMDALGTEFTIATPAFPDNKRTVFKGYLFVGDVLLSESGMQNHPLTPMADPNLVRVM QSQCRRKVGLIDHAVVARGAAAVTERIAQLKAEGVAIAIVDAVSNDDLLRMGPALAAL PLVTAGSGVAMALPANFGFAPSPAASVLPFGSGLRAVVSGSCSLATNRQVQDFIARGG AALAIDPLRIADGADVAAEALAWATPLLARGPVLVYSTADSGAVKSVQSRLGAEEAGA MVERTIASIARGLVERGVRQLVVAGGETSGACVQALGITQMQIGPQIDPGVPWCHAQA LGAGLHITLKSGNFGGDDFFTRAFEVLA" misc_feature 2401510..2402760 /locus_tag="Alide2_2301" /note="Protein of unknown function, DUF1537; Region: DUF1537; cl01345" /db_xref="CDD:194106" gene 2402760..2403425 /locus_tag="Alide2_2302" /db_xref="GeneID:10483346" CDS 2402760..2403425 /locus_tag="Alide2_2302" /inference="protein motif:PFAM:PF00596" /note="PFAM: Class II aldolase/adducin, N-terminal; KEGG: vap:Vapar_5143 putative aldolase" /codon_start=1 /transl_table=11 /product="class II aldolase/adducin family protein" /protein_id="YP_004388186.1" /db_xref="GI:330824883" /db_xref="GO:0046872" /db_xref="InterPro:IPR001303" /db_xref="GeneID:10483346" /translation="MTEAQAREEICRVGRSLFERGYAHATAGNISVRLDDGGFLITPT DACLGFLDPARLARLDAQGRQVSGDRASKTIALHTRIYAAARAFDAQTACVIHTHSTH CVALTLQPAEGELLPAITPYFVMKVGHVPVIPYHRPGAPGAAEAVAQAIARYGAQGTP LRAVMLERLGPNVWHDTPAAAMATLEELEETARLWLLSSPKPAALDAAQIDELRAAFG ARW" misc_feature 2402784..>2403293 /locus_tag="Alide2_2302" /note="Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II)...; Region: Aldolase_II; cl00214" /db_xref="CDD:193713" misc_feature order(2402793..2402795,2402805..2402807,2402829..2402831, 2402898..2402900,2402904..2402909,2403054..2403056, 2403060..2403065,2403078..2403083,2403090..2403092, 2403114..2403116,2403117..2403122,2403162..2403164, 2403261..2403263) /locus_tag="Alide2_2302" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:29521" misc_feature order(2402844..2402846,2402889..2402894,2402973..2402981, 2403048..2403050,2403054..2403056,2403264..2403266) /locus_tag="Alide2_2302" /note="active site" /db_xref="CDD:29521" misc_feature order(2403048..2403050,2403054..2403056,2403264..2403266) /locus_tag="Alide2_2302" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:29521" gene 2403435..2404244 /locus_tag="Alide2_2303" /db_xref="GeneID:10483347" CDS 2403435..2404244 /locus_tag="Alide2_2303" /EC_number="5.3.1.22" /inference="protein motif:PRIAM:5.3.1.22" /note="KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain" /codon_start=1 /transl_table=11 /product="hydroxypyruvate isomerase" /protein_id="YP_004388187.1" /db_xref="GI:330824884" /db_xref="InterPro:IPR012307" /db_xref="GeneID:10483347" /translation="MPRFAANLSMLYGEHAFLDRFAAAAADGFKGVEYLFPYEFPAAE IARRLKDNGLAQVLFNAPPGDWAAGERGLACLPGREAEFREGFARALDYAAALDCPRI HVMAGLVPAGQTREALRPLYIDNLRWAAEQAAQAGRNVLIEPINTRNIPGFFLNRQDD AHAIVQAVGAPNLQVQFDLYHCQIVEGDVAMKIRQYLPTGRVGHFQIAGVPERHEPDI GELNHPYLFSVIDEVAAQCGWQGWVGCEYLPARGAVPGGTTAGLGWVRGLL" misc_feature 2403435..2404232 /locus_tag="Alide2_2303" /note="Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]; Region: Hfi; COG3622" /db_xref="CDD:33421" gene complement(2404286..2405119) /locus_tag="Alide2_2304" /db_xref="GeneID:10483348" CDS complement(2404286..2405119) /locus_tag="Alide2_2304" /inference="protein motif:PFAM:PF06167" /note="PFAM: Protein of unknown function DUF980; KEGG: ajs:Ajs_1618 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388188.1" /db_xref="GI:330824885" /db_xref="InterPro:IPR010384" /db_xref="GeneID:10483348" /translation="MPRFLSRLARRVRSAVAPIPDIGADLWLQTLNRYPFLAALPLAD QAKLRALSALFLHRKEFSGAHGLVVTDAMAVAIAAQACLPLLHWGEPGKALAWYDDFV GIVVHPAEALARRKAVDEAGVVHHYDEVLLGEAMENGPVMLSWPAVQGAGREGHATSV VIHEFVHKIDMKNGGADGCPPLPPGFLGTANARAAHAAWRAAWEPAYEQFRERVIIAE RFGGEWPWLDAYGATAPAEFFAVACEAYFVHRERFAQEFPALLPVLDALFRPTQELQA K" misc_feature complement(2404313..2405068) /locus_tag="Alide2_2304" /note="Phosphoenolpyruvate:glucose-phosphotransferase regulator; Region: MtfA; cl01267" /db_xref="CDD:186408" gene complement(2405124..2405906) /locus_tag="Alide2_2305" /db_xref="GeneID:10483349" CDS complement(2405124..2405906) /locus_tag="Alide2_2305" /inference="protein motif:PFAM:PF00149" /note="PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_2095 UDP-2,3-diacylglucosamine hydrolase" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004388189.1" /db_xref="GI:330824886" /db_xref="GO:0016787" /db_xref="InterPro:IPR004843" /db_xref="GeneID:10483349" /translation="MAATVPPIAELAAPAAWRTVDFVSDLHLEGSHPATVQAFARYLA ATPADAVFLLGDLFEVWVGDDAIDERGSFESECCELLAQAARRRPLFFMHGNRDFLVG VGFTRRTDIPVLADPTALTFAGRHWLLSHGDALCLQDVEYQRFRALARDPQWQAQLLA RPLHERRAQGRSARSESEARKQAGTAPYADVDNAAAIEWLRAARAGALIHGHTHLPAN HVLAPGLARHVLTDWDLEATPPRAGVLRLTDAGLQRIPLAPT" misc_feature complement(2405208..2405843) /locus_tag="Alide2_2305" /note="Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398" /db_xref="CDD:163641" misc_feature complement(order(2405265..2405267,2405271..2405273, 2405514..2405516,2405616..2405621,2405739..2405741, 2405826..2405828,2405832..2405834)) /locus_tag="Alide2_2305" /note="putative active site [active]" /db_xref="CDD:163641" misc_feature complement(order(2405265..2405267,2405271..2405273, 2405514..2405516,2405619..2405621,2405739..2405741, 2405826..2405828,2405832..2405834)) /locus_tag="Alide2_2305" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163641" gene complement(2405911..2406438) /locus_tag="Alide2_2306" /db_xref="GeneID:10483350" CDS complement(2405911..2406438) /locus_tag="Alide2_2306" /EC_number="5.2.1.8" /inference="protein motif:PRIAM:5.2.1.8" /note="KEGG: dia:Dtpsy_2094 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="YP_004388190.1" /db_xref="GI:330824887" /db_xref="InterPro:IPR002130" /db_xref="GeneID:10483350" /translation="MSNPQVELHVTINVAETATPGVITLELDSANAPKSTENFLAYVN KGHYDGTIFHRVIKGFMIQGGGFTPDMKQKPTDTPIENEAANGLKNDQYTIAMARTGD PHSATAQFFINVVDNGFLNHTAPTPQGWGYAVFGKVVKGQDVVDAIKKVRTTRKGFHD DVPFDAVVIDKAVAL" misc_feature complement(2405923..2406378) /locus_tag="Alide2_2306" /note="cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920" /db_xref="CDD:29391" misc_feature complement(order(2406043..2406045,2406079..2406084, 2406106..2406108,2406130..2406147,2406250..2406252, 2406256..2406261,2406268..2406270,2406274..2406276)) /locus_tag="Alide2_2306" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29391" gene complement(2406460..2407047) /locus_tag="Alide2_2307" /db_xref="GeneID:10483351" CDS complement(2406460..2407047) /locus_tag="Alide2_2307" /EC_number="5.2.1.8" /inference="protein motif:PRIAM:5.2.1.8" /note="KEGG: dia:Dtpsy_2093 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="YP_004388191.1" /db_xref="GI:330824888" /db_xref="InterPro:IPR002130" /db_xref="GeneID:10483351" /translation="MISRRTSALALAGAMLGTLLGTPPALAQTAAAPQVKLATSMGDI VLQLDAAKAPRTVENFLSYVRDKHYDGTIFHRVIDGFMIQGGGFTPDMQQKPTKAPIQ NEAANGLKNDRYTIAMARTADPNSATAQFFINVKDNAMLNAPSPDGHGYAVFGKVVSG TEVVDKIKAVATGNRGPYQNVPTTPVIIQSATLVK" sig_peptide complement(2406964..2407047) /locus_tag="Alide2_2307" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 28" misc_feature complement(2406475..2406939) /locus_tag="Alide2_2307" /note="cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920" /db_xref="CDD:29391" misc_feature complement(order(2406595..2406597,2406625..2406630, 2406652..2406654,2406676..2406693,2406796..2406798, 2406802..2406807,2406814..2406816,2406820..2406822)) /locus_tag="Alide2_2307" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29391" gene complement(2407044..2408414) /locus_tag="Alide2_2308" /db_xref="GeneID:10483352" CDS complement(2407044..2408414) /locus_tag="Alide2_2308" /inference="protein motif:PFAM:PF03734" /note="PFAM: YkuD domain; KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG" /codon_start=1 /transl_table=11 /product="ErfK/YbiS/YcfS/YnhG family protein" /protein_id="YP_004388192.1" /db_xref="GI:330824889" /db_xref="InterPro:IPR005490" /db_xref="GeneID:10483352" /translation="MPLSPFPFGHALATAVMAGLLAAPAAAAQGEKKARQPSGKKAQQ RKPVRAAAPAPLRDGDAERRLLEIYRLTAEGHARQALPLAERLVRDHPNFQLAQLALG DLLAARARPVGRVGDVAMPPPAAAARPMPAQIPGISLASAAAAPTPQALPPAAIDTLS DLRAESRLRVDALKARPPQGSIPAQFLELSARTRHAIAMDASRSRLYLFENTDKGLVL VADYYASVGKLGTEKQAEGDQRTPLGVYYITSRLDPATLKDFYGAGALPINYPNPLDL RRGKTGSGIWLHGTPPSQFSRAPLATDGCLVLANPDLERLLKTVEPRTTPVVIARELR WVKPQALQAERQSFHDVLEAWRSAKSQGDTQRLLGFYAPEFQSHRNQDLQQWSQALQA EAQALQGRAVALKDKSVLRWTDSSDTMVVTFGEVTEGTRTGPVKRQYWTRKGARWQIF FEGVIG" sig_peptide complement(2408331..2408414) /locus_tag="Alide2_2308" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.545 at residue 28" misc_feature complement(2407428..2407835) /locus_tag="Alide2_2308" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene complement(2408493..2409563) /locus_tag="Alide2_2309" /db_xref="GeneID:10483353" CDS complement(2408493..2409563) /locus_tag="Alide2_2309" /inference="protein motif:PFAM:PF00515" /note="PFAM: Tetratricopeptide TPR-1; KEGG: aav:Aave_2319 TPR repeat-containing protein" /codon_start=1 /transl_table=11 /product="tetratricopeptide TPR_1 repeat-containing protein" /protein_id="YP_004388193.1" /db_xref="GI:330824890" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR019734" /db_xref="GeneID:10483353" /translation="MKHASCPLSRLLRIATLSALLGMPLAHAADDYSEITQLLRTGKA QEALVKADQRIAANPRDPQLRFLRGVAQADTGKQADAIATFTKLTEDYPELPEPYNNL AVLYANQNQLDKARAALEMAIRTNPSYATAHENLGDIYAKLAGQAYNKALQLDATQAN SLRPKLALIRELFSADAKATVSKVASSARAPAPAPAPAAAPTPAPAAAPAPAPTPAPA AAPQAAPAAPADAPAPAAPKAAASSSAEKDVAKAVHAWAAAWESQDMNAYLGAYAKNF RPQNQSSRAAWEKERRERIVGRAKITVDISDLRVHVDGDKAQARFRQQYSSGSMNVSS RKTLDMVNQSGHWSIVRESTGG" sig_peptide complement(2409477..2409563) /locus_tag="Alide2_2309" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 at residue 29" misc_feature complement(2409099..2409368) /locus_tag="Alide2_2309" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(2409135..2409140,2409147..2409152, 2409159..2409164,2409240..2409245,2409252..2409257, 2409261..2409266,2409351..2409356,2409363..2409368)) /locus_tag="Alide2_2309" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(2409111..2409113,2409120..2409122, 2409132..2409134,2409153..2409155,2409198..2409200, 2409207..2409209,2409219..2409221,2409255..2409257, 2409300..2409302,2409309..2409311,2409321..2409323, 2409357..2409359)) /locus_tag="Alide2_2309" /note="TPR motif; other site" /db_xref="CDD:29151" gene 2409787..2411163 /locus_tag="Alide2_2310" /db_xref="GeneID:10483354" CDS 2409787..2411163 /locus_tag="Alide2_2310" /EC_number="6.1.1.16" /inference="protein motif:TFAM:TIGR00435" /note="SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR" /codon_start=1 /transl_table=11 /product="cysteinyl-tRNA synthetase" /protein_id="YP_004388194.1" /db_xref="GI:330824891" /db_xref="GO:0000166" /db_xref="GO:0004817" /db_xref="GO:0005524" /db_xref="InterPro:IPR015273" /db_xref="InterPro:IPR015803" /db_xref="GeneID:10483354" /translation="MSLRIYNTLSRALEDFSPLEAGHVRMYVCGMTVYDLCHLGHARS MIAFDVVQRWLRASGLAVTYVRNITDIDDKIIRRAVENGETIRSLTDRMIDALHEDAD ALGIERPTHEPRATEYVPQMLSMIGTLQSRGLAYQAANGDVNYAVRKFPGYGRLSGKS LDELNAGERVAVQDGKLDPLDFVLWKGAKPEEPAEVKWQSAYGEGRPGWHIECSAMGC TLLGESFDIHGGGADLAFPHHENEIAQSEGATGKPFARVWMHNGFINVDNEKMSKSLG NFFTIRDVLKEYDAETVRFFVVRSHYRSPLNYSDVHLDDARAALKRLYTALSLVAPAP VAIDWAEPHAARFKAAMDEDFGTPEAVAVLFDLAGEVNRSKSPGAAGLLKALGGHLGL LQGDPQAFLKAGAGLDEPAIQARIAARAAAKAAKNFAEADRIRADLLAQGIVLKDSAA GTTWEAAQ" misc_feature 2409787..2411151 /locus_tag="Alide2_2310" /note="cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260" /db_xref="CDD:178951" misc_feature 2409796..>2410131 /locus_tag="Alide2_2310" /note="catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672" /db_xref="CDD:173899" misc_feature order(2409871..2409882,2409898..2409900,2409904..2409909, 2409916..2409921,2409985..2409987,2409991..2409993) /locus_tag="Alide2_2310" /note="active site" /db_xref="CDD:173899" misc_feature 2409898..2409909 /locus_tag="Alide2_2310" /note="HIGH motif; other site" /db_xref="CDD:173899" misc_feature <2410411..2410713 /locus_tag="Alide2_2310" /note="catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672" /db_xref="CDD:173899" misc_feature 2410594..2410608 /locus_tag="Alide2_2310" /note="KMSKS motif; other site" /db_xref="CDD:173899" misc_feature 2410714..2411148 /locus_tag="Alide2_2310" /note="Anticodon-binding domain of cysteinyl tRNA synthetases; Region: Anticodon_Ia_Cys; cd07963" /db_xref="CDD:153417" misc_feature order(2410720..2410722,2410729..2410731,2410741..2410743, 2410750..2410752,2410759..2410761,2410768..2410770, 2410852..2410854,2410858..2410863,2410870..2410872, 2410879..2410884,2410891..2410893,2410900..2410902, 2411041..2411043,2411053..2411055,2411068..2411070, 2411080..2411082,2411089..2411091,2411116..2411127) /locus_tag="Alide2_2310" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153417" misc_feature order(2411041..2411043,2411053..2411055,2411068..2411070, 2411080..2411082,2411089..2411091,2411119..2411127) /locus_tag="Alide2_2310" /note="anticodon binding site; other site" /db_xref="CDD:153417" gene 2411209..2411856 /locus_tag="Alide2_2311" /db_xref="GeneID:10483355" CDS 2411209..2411856 /locus_tag="Alide2_2311" /EC_number="3.2.2.21" /inference="protein motif:PRIAM:3.2.2.21" /note="SMART: HhH-GPD domain; manually curated; KEGG: dia:Dtpsy_2090 HhH-GPD family protein; PFAM: HhH-GPD domain" /codon_start=1 /transl_table=11 /product="DNA-3-methyladenine glycosylase II" /protein_id="YP_004388195.1" /db_xref="GI:330824892" /db_xref="InterPro:IPR003265" /db_xref="GeneID:10483355" /translation="MAAIKKTAEATPPDYWAEACKHLTKRDRVMRRLIPQVGDVAPYP RGDAFSTLARSIVGQQVSVASAQRVWDQFAALPRSMTPRSVLKLKVDDMRAAGLSARK VEYLVDLALHFDSGQLHVKQWGQMDDAAIVAELVAIRGISRWTADMFLIFHLARPNVL PLDDTTLIQGISRHYFSGDPVSRSDAREVAEAWKPWCSVASWYIWRSLAPLPVDY" misc_feature 2411353..2411826 /locus_tag="Alide2_2311" /note="endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056" /db_xref="CDD:28938" misc_feature 2411383..2411823 /locus_tag="Alide2_2311" /note="endonuclease III; Region: ENDO3c; smart00478" /db_xref="CDD:128754" misc_feature order(2411386..2411394,2411401..2411403,2411512..2411514) /locus_tag="Alide2_2311" /note="minor groove reading motif; other site" /db_xref="CDD:28938" misc_feature 2411620..2411643 /locus_tag="Alide2_2311" /note="helix-hairpin-helix signature motif; other site" /db_xref="CDD:28938" misc_feature order(2411650..2411652,2411809..2411811,2411821..2411823) /locus_tag="Alide2_2311" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:28938" misc_feature 2411698..2411700 /locus_tag="Alide2_2311" /note="active site" /db_xref="CDD:28938" gene 2411908..2412885 /locus_tag="Alide2_2312" /db_xref="GeneID:10483356" CDS 2411908..2412885 /locus_tag="Alide2_2312" /EC_number="6.4.1.2" /inference="protein motif:HAMAP:MF_00823" /note="PFAM: Acetyl-CoA carboxylase, alpha subunit; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: ajs:Ajs_1625 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha" /codon_start=1 /transl_table=11 /product="acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha" /protein_id="YP_004388196.1" /db_xref="GI:330824893" /db_xref="InterPro:IPR001095" /db_xref="GeneID:10483356" /translation="MAKKTFLDFEQPIAELESKIEELRYVQNESAVDISEEIDQLSKK SHQLTKDIYSDLTPWQITKIARHPERPYTMDYVREIFTDFVELHGDRHFADDQSIVGG LARFNGHACMVLGHQKGRDTKERAARNFGMSKPEGYRKALRLMKTAEKFRLPVFTFVD TPGAFPGIDAEERGQSEAIGRNIYEMAQLEVPIVTTVIGEGGSGGALAISVADQVIML QYSIYSVISPEGCASILWKTSDKAQDAADAMGITAHRLKALGLVDKIVNEPVGGAHRD HKQMAAFLKRALGDAYRQLSDLKPKELLERRYERLQSYGRFTDTKADSR" misc_feature 2411911..2412864 /locus_tag="Alide2_2312" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 2412953..2413960 /locus_tag="Alide2_2313" /db_xref="GeneID:10483357" CDS 2412953..2413960 /locus_tag="Alide2_2313" /inference="protein motif:TFAM:TIGR02432" /note="KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; Lysidine-tRNA(Ile) synthetase, substrate-binding domain" /codon_start=1 /transl_table=11 /product="tRNA(Ile)-lysidine synthetase" /protein_id="YP_004388197.1" /db_xref="GI:330824894" /db_xref="GO:0000166" /db_xref="GO:0005524" /db_xref="InterPro:IPR011063" /db_xref="InterPro:IPR012795" /db_xref="InterPro:IPR015262" /db_xref="GeneID:10483357" /translation="MTQSFDAAMHAFAPRLPLAVGLSGGADSTALLLACAGRWPGQVH AFHVHHGLQAAADGFEQHCVALCARLQVPLSVRRVDARHASGQSPEDAARQARYKAFE ALALDNQARAAIGTIALAQHADDQVETLLLALSRGAGVAGLAAMPAQWERGGLHWSRP LLRVAGADVRAWLQQQGEHWVEDPTNADERYTRNRIRRRLLPALQQAFPHFRDTFARS CAHAAQASELLQELARADLAAVGQPPRIAALRLLSRARQANVLRHWLRSAHGTTPASA QLDALLDQIAACATRGHRIHLKVGSGHVVREAGALGWYNRPVLDLISARDGGAPKQPS Q" misc_feature 2413001..2413558 /locus_tag="Alide2_2313" /note="N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992" /db_xref="CDD:30179" misc_feature order(2413013..2413021,2413025..2413036,2413091..2413093, 2413097..2413099) /locus_tag="Alide2_2313" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30179" gene 2413997..2415268 /locus_tag="Alide2_2314" /db_xref="GeneID:10483358" CDS 2413997..2415268 /locus_tag="Alide2_2314" /inference="protein motif:TFAM:TIGR00657" /note="KEGG: aav:Aave_2324 aspartate kinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT" /codon_start=1 /transl_table=11 /product="aspartate kinase" /protein_id="YP_004388198.1" /db_xref="GI:330824895" /db_xref="GO:0004072" /db_xref="InterPro:IPR001048" /db_xref="InterPro:IPR001341" /db_xref="InterPro:IPR002912" /db_xref="InterPro:IPR005260" /db_xref="GeneID:10483358" /translation="MALFVHKYGGTSMGSTERIRNVAKRVAKWARAGHQVVVVPSAMS GETNRLLALAKDLAPARASAAFHREQDMLAATGEQASSALLAIALQAEGMEAVSYAGW QVPIRTDSSYTKARIESIDDKRVRADLDAGRVVIITGFQGIDDEGNITTLGRGGSDTS AVAVAAAMKADECLIYTDVDGVYTTDPRVVSQARRLKSVSFEEMLEMASLGSKVLQIR SVEFAGKYKVPMRVLSSFTPWDIDINEEAKSGTLITFEEDEQMEQAVVSGIAFNRDET KISVLGVPDKPGIAYQILGPVADANIEVDVIIQNISKDGRTDFSFTVNHNDHARTLEL LREKVVPALGAQEVVGDTAICKVSIVGIGMRSHVGVAAKMFRVLSEEGINIQMISTSE IKTSVVIEDKYLELAVRALHKAFDLDQPAAA" misc_feature 2413997..2415250 /locus_tag="Alide2_2314" /note="aspartate kinase; Reviewed; Region: PRK06635" /db_xref="CDD:180641" misc_feature 2414003..2414758 /locus_tag="Alide2_2314" /note="AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive...; Region: AAK_AKii-LysC-BS; cd04261" /db_xref="CDD:58627" misc_feature order(2414015..2414017,2414021..2414029,2414528..2414533, 2414540..2414545) /locus_tag="Alide2_2314" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58627" misc_feature order(2414015..2414017,2414135..2414137,2414228..2414230) /locus_tag="Alide2_2314" /note="putative catalytic residues [active]" /db_xref="CDD:58627" misc_feature order(2414117..2414119,2414135..2414137,2414468..2414470, 2414552..2414554) /locus_tag="Alide2_2314" /note="putative Mg ion binding site [ion binding]; other site" /db_xref="CDD:58627" misc_feature order(2414117..2414122,2414135..2414137,2414228..2414230) /locus_tag="Alide2_2314" /note="putative aspartate binding site [chemical binding]; other site" /db_xref="CDD:58627" misc_feature 2414819..2415046 /locus_tag="Alide2_2314" /note="ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins; Region: ACT_AKii-LysC-BS-like_1; cd04913" /db_xref="CDD:153185" misc_feature 2414930..2414935 /locus_tag="Alide2_2314" /note="putative allosteric regulatory site; other site" /db_xref="CDD:153185" misc_feature 2415062..2415247 /locus_tag="Alide2_2314" /note="ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains; Region: ACT_AKii-LysC-BS-like_2; cd04936" /db_xref="CDD:153208" gene complement(2415315..2416670) /locus_tag="Alide2_2315" /db_xref="GeneID:10483359" CDS complement(2415315..2416670) /locus_tag="Alide2_2315" /inference="protein motif:PFAM:PF00654" /note="PFAM: Chloride channel, voltage gated; KEGG: aav:Aave_4712 Cl-channel, voltage-gated family protein" /codon_start=1 /transl_table=11 /product="Cl- channel voltage-gated family protein" /protein_id="YP_004388199.1" /db_xref="GI:330824896" /db_xref="GO:0005247" /db_xref="InterPro:IPR001807" /db_xref="GeneID:10483359" /translation="MHQEPDFFHNLRQEFADGWRWVERSIVLAYAAAAGLCVVAFTLL SNLAFEWFMRLYHWHGGWAVLLWTPALTAAIVWATRRWAPGAAGSGIPQVMAAQEAAL TGAQRSGLVSLRLSIAKIVLAGFGFLAGLSIGREGPSVQVAAGVMHHARRWFGPRTGI TGHALLVAGGAAGIAAAFNAPLAGVLFAIEELARKLESRASGLILSAIVLAGLMGVSA FGNLTYFGRIQVTALGWDALLPGLCVALACGVLGGLFAKVMAASLTGAPNRFNRLRER FPIRFAAAGGLVLAAIGLVTEGATFGAGSEAVKHMLAGHAEVPAFFVTLKFIATWLSA WVGAPGGIFAPSLSIGAGIGHNVSLFAGAAIAPALIAMGMAAFLAAVTQAPLTAFIIV MEMVDGHAMVLSLMAAAMLASLVSRMLARPLYGALAQHMLKMALPAPEEAQGGPARQR Q" misc_feature complement(2415474..2416550) /locus_tag="Alide2_2315" /note="ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a...; Region: EriC_like; cd01034" /db_xref="CDD:79362" misc_feature complement(2415474..2416460) /locus_tag="Alide2_2315" /note="Voltage gated chloride channel; Region: Voltage_CLC; pfam00654" /db_xref="CDD:189656" misc_feature complement(order(2415636..2415650,2416257..2416271, 2416395..2416409)) /locus_tag="Alide2_2315" /note="putative ion selectivity filter; other site" /db_xref="CDD:79362" misc_feature complement(2416263..2416265) /locus_tag="Alide2_2315" /note="putative pore gating glutamate residue; other site" /db_xref="CDD:79362" misc_feature complement(2416098..2416100) /locus_tag="Alide2_2315" /note="putative H+/Cl- coupling transport residue; other site" /db_xref="CDD:79362" gene 2416746..2416838 /locus_tag="Alide2_R0032" /note="tRNA-Ser3" /db_xref="GeneID:10483360" tRNA 2416746..2416838 /locus_tag="Alide2_R0032" /product="tRNA-Ser" /db_xref="GeneID:10483360" gene 2417121..2417729 /locus_tag="Alide2_2316" /db_xref="GeneID:10483361" CDS 2417121..2417729 /locus_tag="Alide2_2316" /inference="protein motif:PFAM:PF00440" /note="PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_1833 TetR family transcriptional regulator" /codon_start=1 /transl_table=11 /product="regulatory protein TetR" /protein_id="YP_004388200.1" /db_xref="GI:330824897" /db_xref="GO:0003700" /db_xref="InterPro:IPR001647" /db_xref="GeneID:10483361" /translation="MTEHSRYLPADERRNATVEAVIALAAQQNPVDITTTAIAQKMGV TQGALFRHFPSKDAILQAVMSWVAQRLLSRVDRAAQAAASPAAALEAVFMAHIDFVSE HPGVPRLIFGELQRQEQTVPKQLVQTLLVHYGERLRGLLEAGKARGELDEGLDVQAAA VLFIGTVQGLVMQSLLAGDVARMRRDAAQVFAIYRRGIGRAR" misc_feature 2417154..2417639 /locus_tag="Alide2_2316" /note="division inhibitor protein; Provisional; Region: slmA; PRK09480" /db_xref="CDD:181894" misc_feature 2417172..2417309 /locus_tag="Alide2_2316" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 2417726..2418877 /locus_tag="Alide2_2317" /db_xref="GeneID:10483362" CDS 2417726..2418877 /locus_tag="Alide2_2317" /inference="protein motif:TFAM:TIGR01730" /note="KEGG: dia:Dtpsy_1685 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD" /codon_start=1 /transl_table=11 /product="RND family efflux transporter MFP subunit" /protein_id="YP_004388201.1" /db_xref="GI:330824898" /db_xref="GO:0008565" /db_xref="InterPro:IPR006143" /db_xref="GeneID:10483362" /translation="MKVPHLQRRTLALIAAIVPLAALFVYVVLRSGPLAPVAVTLGTV QSRAVAPALAGIGTVQARYIYKIGPTAAGRVQRLDVHVGDMVRAGQVLGEMDPVDLDE RIRAQQAAIKSAEAGLRQAEARQSYALDQARRYGQLVSVRATSEENLATRQQELAVAD AALAAAREDASRLRSELQALRAQRGNLRLVAPVAGLVAARDADPGTTVVAGQAVIRLM DPASLWVDARFDQISAQGLAAGLPAEVVLRSRHGQPLAARVLRTEPLADAVTEELLAK VIFDALPRPLPPIGELAEVTVHLPPLPEAPTIPNAALRTVDGQRGVWKFKDGELAFAP LRLGRADLDGQVQVREGLAVGDAIVVYSERTLGPKSRVHVVERIAGVSP" misc_feature 2417840..2418850 /locus_tag="Alide2_2317" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 2418874..2420073 /locus_tag="Alide2_2318" /db_xref="GeneID:10483363" CDS 2418874..2420073 /locus_tag="Alide2_2318" /inference="protein motif:PFAM:PF02687" /note="PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_1686 protein of unknown function DUF214" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388202.1" /db_xref="GI:330824899" /db_xref="InterPro:IPR003838" /db_xref="GeneID:10483363" /translation="MISLAGRDILHAWGKFVFTGIGLGLLIGVTLTMAGVYRGMVDDG RVLLDNSGADLWVVQRDTLGPYAESSSVPDDLWRSLRAMPGVAQAANVTYLTMQVGHG DKDVRAMVVGVAAGGPGVPGWPPQLVAGRQITRGHYEAVADAAAGVRLGDVLKIRRNR YTVVGLTRRMVSSAGDPMVFIPLKDAQAAQFLKDNDAVLMQRRRTEANPAFNRPAVPD LLDAVIASQTSNGQVNAVLVRLRPGFTPQEVADPIRLWLRLTVYDRAQMEGILVGKLI ATSAKQIGMFLVILALVSAAIVAFLIYTLTMDKIREIAVLKLIGTRNRTIAAMIVQQA LVLGLIGFVVGKITATFAAPLFPKYVLLVPFDTVAGFAAVMAICVLSSVVAIRVALRV DPAQAIG" misc_feature 2419792..2420055 /locus_tag="Alide2_2318" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 2420078..2420788 /locus_tag="Alide2_2319" /db_xref="GeneID:10483364" CDS 2420078..2420788 /locus_tag="Alide2_2319" /EC_number="3.6.3.28" /inference="protein motif:PRIAM:3.6.3.28" /note="PFAM: ABC transporter-like; KEGG: ajs:Ajs_1836 ABC transporter related; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="phosphonate-transporting ATPase" /protein_id="YP_004388203.1" /db_xref="GI:330824900" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="GeneID:10483364" /translation="MKRQGIRIERLSKRYGAGDTAFLALKDVNMQVAPGEVVGLIGPS GSGKSTLLKCLGAVIDPTSGRMTLDDRVIYDDGWKVRDLGALRRDQIGFVFQAPYLIP FLDATDNVALLPMLAGVPNDEARRRALELLTALDVQHRAKAMPSQLSGGEQQRVAIAR GLVNRPPVILADEPTAPLDSQRAMAVIRILNDMARRLQTAVIVVTHDEKIIPTFKRIY HIRDGVTHEEAGEGRGFE" misc_feature 2420093..2420761 /locus_tag="Alide2_2319" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature 2420093..2420746 /locus_tag="Alide2_2319" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature 2420201..2420224 /locus_tag="Alide2_2319" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature order(2420210..2420215,2420219..2420227,2420363..2420365, 2420591..2420596,2420693..2420695) /locus_tag="Alide2_2319" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature 2420354..2420365 /locus_tag="Alide2_2319" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature 2420519..2420548 /locus_tag="Alide2_2319" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature 2420579..2420596 /locus_tag="Alide2_2319" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature 2420603..2420614 /locus_tag="Alide2_2319" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature 2420681..2420701 /locus_tag="Alide2_2319" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene complement(2420859..2422187) /locus_tag="Alide2_2320" /db_xref="GeneID:10483365" CDS complement(2420859..2422187) /locus_tag="Alide2_2320" /inference="protein motif:TFAM:TIGR02283" /note="KEGG: ajs:Ajs_1837 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like" /codon_start=1 /transl_table=11 /product="lytic murein transglycosylase" /protein_id="YP_004388204.1" /db_xref="GI:330824901" /db_xref="InterPro:IPR002477" /db_xref="InterPro:IPR011970" /db_xref="GeneID:10483365" /translation="MARAVTMGAMRSLLLPTAIGLAVLAGCASQPTPPAAPAPIPATP PPAAATPAPLPAPEPEPAASGTADTIAGFHAWLEAFAREALAAGIHTQTVDAMLARAQ WQPRVVELDRAQPEFTRTPWAYLDSAVSPQRVAQGREQRRLHAAALEAAEQRYGVPAS IITAIWGMESNYGRNFGSFSTIDALATLAYDGRRRDWARGELLATLRIVDQGDMAADA LVGSWAGAMGHTQFLPSVFLRFAVDADGDGRRDIWGSVPDVAASTANFLAHSGWKSGQ PWGVEVRLPPGFDYARAELGVRQTSDAWAAEGVRGIDGAALPQLPDASILTPAGARGP AILVGPNFRALLRYNNSVNYALAVGLLARRIDGGAGLSTPWPRDLQPLSRSDVKTLQE LLNARGLDAGTPDGVAGPATRAGVRRYQQSLGLPADGYATRELLQQLQEP" misc_feature complement(2421069..2421989) /locus_tag="Alide2_2320" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" misc_feature complement(2421087..2421974) /locus_tag="Alide2_2320" /note="lytic murein transglycosylase; Region: MltB_2; TIGR02283" /db_xref="CDD:162796" misc_feature complement(2420871..2421041) /locus_tag="Alide2_2320" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene 2422234..2423670 /locus_tag="Alide2_2321" /db_xref="GeneID:10483366" CDS 2422234..2423670 /locus_tag="Alide2_2321" /EC_number="3.1.11.1" /inference="protein motif:PRIAM:3.1.11.1" /note="KEGG: ajs:Ajs_1838 exonuclease I; PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease I" /protein_id="YP_004388205.1" /db_xref="GI:330824902" /db_xref="InterPro:IPR013520" /db_xref="InterPro:IPR013620" /db_xref="GeneID:10483366" /translation="MHTFLWHDYETFGTDTRRDRPAQFAAIRTDAQLNEIGEPLMLYC RPANDYLPDPQSCLITGITPQLCLEKGVPEHQFAARIEAELALPGTIGVGYNTIRFDD EITRFMFWRNLMDPYAREWQNQCGRWDLLDVVRLAYALRPDGIEWPVADGKTSFRLEN LTKANGLAHEAAHDALSDVRATIALARLVRARNPRLFDFALGLRKKDRVAAELRLPAT AQTARPFLHVSGMFGAERGCLAVMWPLASHPTNKNELLAWDLAHDPAELATLSADEIR QRLFTRAADLPEGVTRLPLKSVHLNKSPMVVGNVNTLTPAVAQRWGLDMAQAARHAEA ARRLPDMSAIWAQVFQRPQEGPVDVDQDLYGGFLGNEDRRRLNRLRALSPEELARERP GFDDERLAELVWRYRARNFPQTLSPEEHERWEAHRVAMLVEGEGGGLTFDALFERLDE LGEQADDERTEAILGAIYDYAEGIAPGM" misc_feature 2422234..2423667 /locus_tag="Alide2_2321" /note="exonuclease I; Provisional; Region: sbcB; PRK11779" /db_xref="CDD:183310" misc_feature 2422246..2422794 /locus_tag="Alide2_2321" /note="N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins; Region: ExoI_N; cd06138" /db_xref="CDD:99841" misc_feature order(2422255..2422266,2422270..2422275,2422408..2422413, 2422516..2422521,2422528..2422536,2422750..2422752, 2422765..2422767) /locus_tag="Alide2_2321" /note="active site" /db_xref="CDD:99841" misc_feature order(2422255..2422266,2422270..2422272,2422516..2422521, 2422528..2422533,2422750..2422752,2422765..2422767) /locus_tag="Alide2_2321" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99841" misc_feature order(2422255..2422257,2422261..2422263,2422534..2422536, 2422750..2422752,2422765..2422767) /locus_tag="Alide2_2321" /note="catalytic site [active]" /db_xref="CDD:99841" misc_feature 2422843..2423655 /locus_tag="Alide2_2321" /note="Exonuclease C-terminal; Region: Exonuc_X-T_C; pfam08411" /db_xref="CDD:149465" gene 2423642..2424490 /locus_tag="Alide2_2322" /db_xref="GeneID:10483367" CDS 2423642..2424490 /locus_tag="Alide2_2322" /inference="protein motif:PFAM:PF02146" /note="PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; KEGG: ajs:Ajs_1839 silent information regulator protein Sir2" /codon_start=1 /transl_table=11 /product="Silent information regulator protein Sir2" /protein_id="YP_004388206.1" /db_xref="GI:330824903" /db_xref="GO:0008270" /db_xref="GO:0070403" /db_xref="InterPro:IPR003000" /db_xref="GeneID:10483367" /translation="MPKASPPACDPGLAIGPLRDWLRLHPRLFVVTGAGCSTGAGIPD YRDENGDWKRPQPVTYQAFMGDAATRRRYWARSLAGWPVMGGARPGAAHHALARLERQ GRIELLLTQNVDGLHHAAGSRRVIDLHGRIDTVRCMDCEARTPRAELQRELLRRNPAW AALQASAAPDGDADLEGRDFQSFDVPPCPRCGTGLLKPDVVFFGESVPRGRVDAAHAA LARADAVLVAGSSLMVYSGYRFVQAAAQRGLPVAAINRGRTRADGLLALKLEADVGQT LEQLSY" misc_feature 2423657..2424481 /locus_tag="Alide2_2322" /note="NAD-dependent deacetylase; Provisional; Region: PRK05333" /db_xref="CDD:180022" misc_feature 2423693..2424472 /locus_tag="Alide2_2322" /note="SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/...; Region: SIRT4; cd01409" /db_xref="CDD:29377" misc_feature order(2423744..2423746,2423750..2423755,2423774..2423779, 2423918..2423920,2423972..2423977,2423981..2423983, 2424026..2424028,2424326..2424328,2424341..2424343, 2424407..2424412,2424467..2424469) /locus_tag="Alide2_2322" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:29377" misc_feature order(2423978..2423980,2424026..2424028,2424242..2424244, 2424248..2424262,2424338..2424346) /locus_tag="Alide2_2322" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29377" misc_feature order(2424050..2424052,2424059..2424061,2424203..2424205, 2424212..2424214) /locus_tag="Alide2_2322" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:29377" gene 2424623..2426986 /locus_tag="Alide2_2323" /db_xref="GeneID:10483368" CDS 2424623..2426986 /locus_tag="Alide2_2323" /inference="protein motif:PFAM:PF01594" /note="KEGG: dia:Dtpsy_1696 putative phytochrome sensor protein; PFAM: Uncharacterised protein family UPF0118; GAF; SMART: GAF" /codon_start=1 /transl_table=11 /product="putative phytochrome sensor protein" /protein_id="YP_004388207.1" /db_xref="GI:330824904" /db_xref="InterPro:IPR002549" /db_xref="InterPro:IPR003018" /db_xref="GeneID:10483368" /translation="MNRGEPDPSLPPHRALALESLVPSLRLMVGLVIAALIIAGLYFG RTILVPLVLAFLLSFVLAPLVDRLRRLRVPDVAAVLAVVLATLLVLGAGATLVANEAR ALSAELPSYQSTIRGKLRNLRKQMRAPGMFDGAKRTLDIVQREVDAATPATPAAVQKV QVLPPPVSPAQQAMAALGSVSGPLADAALVLVFVVFILLDRVDLRDRLLRLWGRDLHR ATDAMDEAGGRITRYLTMQLLVNATYGIPLAAGLWFIGVPGALLWGVLAAVMRFVPYV GPLISSAFPVALAFAVDPGWSLVLWTIGLIAVLELISNNVVEPWLYGASTGLSVMSLI VSATFWTALWGPVGLVMSTPLTVCLLVVGRYLPQLAFLDVLLGSQPALDGPTRVYQRL LAGDADEAIELSAQQIDAAQGGVREFYAGTGLSVLRMAVGDHARAATPHHRLRVVEGM DELLDELAEQYPPPPAIAAARPGVACIGGKWEVDQLAARMLAHALQLQGCPAQAHSRG AQHEAGPALDGAQVVCLAWLAPDPAAVSASARHLCRRVKRRWPHVQVVLALLNGTEGL PDEGVLGQFGADAVVTSFEETLLCITRIQGASASNHYENAPVPEGDAARVAALHASGA LHSDALAALCQGAAQRAADIFDVPTAMISLVDAGTQHVRCVHGVHGGGAMPRALSLCG HVVAGGGPLVVPDLARDARFAGNPLLRERALRFYAGVPLRDGEGHVLGTLCLMDAEPR SFDEREARLLQAMADDLMASWRGERAPGQGGTDAPPPSATVGQPVPQ" misc_feature <2425271..2425708 /locus_tag="Alide2_2323" /note="Domain of unknown function DUF20; Region: UPF0118; cl00465" /db_xref="CDD:186015" misc_feature <2426642..2426902 /locus_tag="Alide2_2323" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" gene complement(2426968..2427537) /locus_tag="Alide2_2324" /db_xref="GeneID:10483369" CDS complement(2426968..2427537) /locus_tag="Alide2_2324" /inference="protein motif:PFAM:PF00583" /note="PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aav:Aave_3219 GCN5-related N-acetyltransferase" /codon_start=1 /transl_table=11 /product="GCN5-like N-acetyltransferase" /protein_id="YP_004388208.1" /db_xref="GI:330824905" /db_xref="GO:0008080" /db_xref="InterPro:IPR000182" /db_xref="GeneID:10483369" /translation="MIESNRLSTPRLRLRQWTAADREPFAALNADPEVMRHFPAPLTR TQSDAMAVRIEALIAERGWGFWAADSLEDGLPRFMGFVGLHTPAPDLPFSPCVEIGWR LARPFWGRGLATEAARLALRTGFEGLGLEEIVSFTAVGNQRSRAVMRRLGMRECPHEA FDHPALPAGHPLRAHCLYRLARADYWGTG" misc_feature complement(2426983..2427531) /locus_tag="Alide2_2324" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" gene complement(2427534..2428163) /locus_tag="Alide2_2325" /db_xref="GeneID:10483370" CDS complement(2427534..2428163) /locus_tag="Alide2_2325" /inference="protein motif:TFAM:TIGR01091" /note="KEGG: xtr:100496255 uracil phosphoribosyltransferase-like; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="uracil phosphoribosyltransferase" /protein_id="YP_004388209.1" /db_xref="GI:330824906" /db_xref="GO:0004845" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR005765" /db_xref="GeneID:10483370" /translation="MSNVHVIDHPLVQHKLTLMRKKDASTNSFRRLLGELSTLMAYEV TRDMPLQDVRIETPLETMTARMIDGKKLVLVSILRAGNGFLDGMLNVVPGARVGHIGL YRDPATLQPVEYYFKMPSEMAERDVIVVDPMLATGNSAAAAVDRLKKLQPRSIKFVCL LAAPEGVATMQKAHPDVPIFTAAIDRELNDHGYILPGLGDAGDRIFGTK" misc_feature complement(2427537..2428163) /locus_tag="Alide2_2325" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene complement(2428252..2429238) /locus_tag="Alide2_2326" /db_xref="GeneID:10483371" CDS complement(2428252..2429238) /locus_tag="Alide2_2326" /EC_number="4.3.1.16" /inference="protein motif:PRIAM:4.3.1.16" /note="KEGG: dia:Dtpsy_1698 pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit" /codon_start=1 /transl_table=11 /product="Threo-3-hydroxyaspartate ammonia-lyase" /protein_id="YP_004388210.1" /db_xref="GI:330824907" /db_xref="InterPro:IPR001926" /db_xref="GeneID:10483371" /translation="MDLPRPPLPTYEDVAEAAHRLKGMAHHTPVLRSSTADALLGAEL FFKCENLQRMGAFKFRGAFNALVQFSDAQRARGVLAFSSGNHAQAIALSARLLQMPAV IVMPEDAPAAKIAATRGYGAEVVTYDRFTEDREAISQRLASERGMTLIPPFDHAHVIA GQGTVAKELFEEVPHLDYLFVPLGGGGLLSGSLLAAQRLAPQCRVIGVEPEAGNDAQQ SLRAGKIVRIGTPRTIADGAQSQALGSLTFPIIHAGVSDIVTATDAQLIEAMHFFAER MKIVVEPTGALGLAGARHGGVALRGRRVGVVISGGNVDMARYAQLLGTALAG" misc_feature complement(2428270..2429223) /locus_tag="Alide2_2326" /note="serine/threonine dehydratase; Validated; Region: PRK07048" /db_xref="CDD:180808" misc_feature complement(2428387..2429208) /locus_tag="Alide2_2326" /note="Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562" /db_xref="CDD:107205" misc_feature complement(order(2428399..2428407,2428417..2428419, 2428426..2428431,2428438..2428440,2428645..2428650, 2429086..2429091,2429182..2429187,2429194..2429196, 2429203..2429208)) /locus_tag="Alide2_2326" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:107205" misc_feature complement(order(2428675..2428689,2428984..2428986, 2429065..2429067)) /locus_tag="Alide2_2326" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107205" misc_feature complement(2429065..2429067) /locus_tag="Alide2_2326" /note="catalytic residue [active]" /db_xref="CDD:107205" gene 2429489..2430193 /locus_tag="Alide2_2327" /db_xref="GeneID:10483372" CDS 2429489..2430193 /locus_tag="Alide2_2327" /inference="protein motif:PFAM:PF01709" /note="PFAM: Protein of unknown function DUF28; KEGG: dia:Dtpsy_1700 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388211.1" /db_xref="GI:330824908" /db_xref="InterPro:IPR002876" /db_xref="GeneID:10483372" /translation="MGAQWKAKGKALVADAKGRLFGKLVKEIIVAARAGADPAGNSRL RLAIEAARKASMPKDTLERAVKKGSGVGGDAVNYERVIYEGFAPHQVPVMVECLTDNV NRTAPEMRVCFRKGQMSAVAWDFDHVGMIEGEPAQPGADAELAAIEAGAQDFEPGEED GQTLFLTDPTDLDAVAKALPEFGFKVLSAKLGYKARNPVSMASLPPEAQEEVQAFLAG IENNDDVQNVFVGLVD" misc_feature 2429489..2430184 /locus_tag="Alide2_2327" /note="Domain of unknown function DUF28; Region: DUF28; cl00361" /db_xref="CDD:193787" gene 2430327..2430481 /locus_tag="Alide2_2328" /pseudo /db_xref="GeneID:10483373" gene 2430857..2432281 /locus_tag="Alide2_2329" /db_xref="GeneID:10483374" CDS 2430857..2432281 /locus_tag="Alide2_2329" /inference="protein motif:TFAM:TIGR02745" /note="TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase accessory protein CcoG" /protein_id="YP_004388212.1" /db_xref="GI:330824909" /db_xref="InterPro:IPR014116" /db_xref="GeneID:10483374" /translation="MPDPMHSNDRQPKKVIPIVPESVSLYEARKKIQPRSISGKFTSW RWIMVWVTQLVFYGLPWLEWGQRQTVLFDLGGLRFYLFGLVLYPQDFIYLTGLLVISA LALFLFTATAGRLWCGFACPQTVYTEIFLWLERRIEGERSARLRLDASGWTFEKLWKR TAKHGAWIFVSLWTGFTFVGYFVPIRQLGGELLALRGWQIFWTLFYGLATYGNAGFLR EQVCKYMCPYARFQSAMFDKDTLIVTYDAQRGEPRGARGKNGAPAGQGDCIDCTLCVQ VCPVGIDIRDGLQYECIGCGLCIDACNSVMDKVGLPLGLIRLATTNGMAGRWSSARML RRVVRPRVVMYTAVLVALSAAMIVSLAARTPLKVNVVRDRAALSRIVPGGKLENVYRL QVMNATEAPQRYRIGARGIDGIEVASEPEIAVGATESQWVAVRLRIPYGAAPEGAHPV YFEVESLGPALARVSEKASFLVPR" misc_feature 2430977..2432269 /locus_tag="Alide2_2329" /note="cytochrome c oxidase accessory protein FixG; Region: ccoG_rdxA_fixG; TIGR02745" /db_xref="CDD:162996" misc_feature 2431922..2432275 /locus_tag="Alide2_2329" /note="Ubp3 associated protein Bre5; Region: Bre5; pfam11614" /db_xref="CDD:152050" gene 2432308..2433726 /locus_tag="Alide2_2330" /db_xref="GeneID:10483375" CDS 2432308..2433726 /locus_tag="Alide2_2330" /inference="protein motif:PFAM:PF01654" /note="PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: ara:Arad_12230 cytochrome bd-type quinol oxidase subunit 1" /codon_start=1 /transl_table=11 /product="cytochrome bd ubiquinol oxidase subunit I" /protein_id="YP_004388213.1" /db_xref="GI:330824910" /db_xref="GO:0016491" /db_xref="InterPro:IPR002585" /db_xref="GeneID:10483375" /translation="MLGFTALELARIQFGFTISFHIVFPAITIGLASYLAVLEGLWLW RKDPVYRDLYHFWSRIFAVNFAMGVVSGLVMAYQFGTNWSHYSSFAGSITGPLLAYEV LTAFFLEAGFLGVMLFGWNKVGSGLHFFSTVMVALGTLVSATWILASNSWMQTPQGFE IVDNVVVPVNWFEVIFNPSFSYRLAHMTMAAFISTALFVGASGAWHLLRGNDNPCVRT MLSMALWMLIAAAPLQIAIGDMHGLNTLEHQPAKLAAMEGHWENKPGEGAPLLLFGWP DMQAEATRYAVEVPRLGSLILTRSWDGQYRALKEFAPQDRPNVLLVFWSFRVMVGLGM LILLLALWGAWLRWRGRLYGSQAFLRFTAWMGPAGLIALLAGWFTTEVGRQPWIVYGV LRTQDAVSNHSAQVMGATLIVFIVAYFAVFGIGVRYMLKLVSQGPQAHEGASDAEAPG HRPARPLSAAPGAASRTHHQEG" misc_feature 2432332..2433618 /locus_tag="Alide2_2330" /note="Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; cl00562" /db_xref="CDD:193871" gene 2433730..2434740 /locus_tag="Alide2_2331" /db_xref="GeneID:10483376" CDS 2433730..2434740 /locus_tag="Alide2_2331" /inference="protein motif:TFAM:TIGR00203" /note="KEGG: msl:Msil_2643 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II" /codon_start=1 /transl_table=11 /product="cytochrome d ubiquinol oxidase subunit II" /protein_id="YP_004388214.1" /db_xref="GI:330824911" /db_xref="InterPro:IPR003317" /db_xref="GeneID:10483376" /translation="MGIDLPVIWFVIIVFGLMMYVIMDGFDLGIGILFPFVRNRESRD VMVNTVAPVWDGNETWLVLGGASLMAAFPLAYAVVLSALYLPLLLMLLGLIWRGVAFE FRFKADESHRHFWDVAFTAGSYMATFFQGVALGAFLNGFEVHNGNYIGGAFDWLSPFS LFAGLGLVVAYALLGATWLIIKTEGSLHDRMVSLARPVTLALLVAIGIVSLWTPLTHP GIAQRWFDWPNIALFAPVPVLVLLTGYGLLRSLRGGDPSVTPFMLTLCLLFLGYTGLG ISVWPHIIPPDITIHEAAAPPQSMGFALVGALLIIPVILTYTAWSYYVFRGKVRQGEG YH" misc_feature 2433739..2434707 /locus_tag="Alide2_2331" /note="Cytochrome oxidase subunit II; Region: Cyto_ox_2; pfam02322" /db_xref="CDD:190279" misc_feature 2433742..2434716 /locus_tag="Alide2_2331" /note="cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219" /db_xref="CDD:187194" gene 2434740..2434886 /locus_tag="Alide2_2332" /db_xref="GeneID:10483377" CDS 2434740..2434886 /locus_tag="Alide2_2332" /inference="protein motif:PFAM:PF10617" /note="PFAM: Protein of unknown function DUF2474; KEGG: ara:Arad_12232 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388215.1" /db_xref="GI:330824912" /db_xref="InterPro:IPR018895" /db_xref="GeneID:10483377" /translation="MASSTSRRTVSWWRRVGWLVLIWAASVAALAVMALFFRVLMRLA GMSS" sig_peptide 2434740..2434835 /locus_tag="Alide2_2332" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.920 at residue 32" gene complement(2435301..2435996) /locus_tag="Alide2_2333" /db_xref="GeneID:10483378" CDS complement(2435301..2435996) /locus_tag="Alide2_2333" /inference="protein motif:PFAM:PF04172" /note="PFAM: LrgB-like protein; KEGG: dia:Dtpsy_2405 LrgB family protein" /codon_start=1 /transl_table=11 /product="LrgB family protein" /protein_id="YP_004388216.1" /db_xref="GI:330824913" /db_xref="InterPro:IPR007300" /db_xref="GeneID:10483378" /translation="MIAPSAFAIALAATLLTVAAYAVALWAYQRSGWGLLLPVLTGAA TVVALLVAMDVPYGVYREGTGLLSWLAGPATVALAFPLYRQWGRLRGIWWPVMGALLA GSVTAVVSAIGIAWLLDADWPLMMSLAPKSATMPVAMPVAESTGGAASLSAVAVALTG IAAAVLSGGLFGLLGVRSGMVRGFALGAAAHAIGTARAFQIGETAIGFAALAMSLNAI ATSLLVPLIVGLL" sig_peptide complement(2435928..2435996) /locus_tag="Alide2_2333" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.821 at residue 23" misc_feature complement(2435304..2435840) /locus_tag="Alide2_2333" /note="LrgB-like family; Region: LrgB; cl00596" /db_xref="CDD:186096" gene complement(2435993..2436394) /locus_tag="Alide2_2334" /db_xref="GeneID:10483379" CDS complement(2435993..2436394) /locus_tag="Alide2_2334" /inference="protein motif:PFAM:PF03788" /note="PFAM: Uncharacterised protein family LrgA/YohJ; KEGG: dac:Daci_2210 LrgA family protein" /codon_start=1 /transl_table=11 /product="LrgA family protein" /protein_id="YP_004388217.1" /db_xref="GI:330824914" /db_xref="InterPro:IPR005538" /db_xref="GeneID:10483379" /translation="MSRTELRIGAMASRTLQFSLGFVVLAALLSAGGRLVRWLHLPIP PAIVGMVLLLAVLACFGRLVAAVEAASTPLLKHMMLFFIPTVAGVMEQFQTLRTGWLP FVVACVAGAALTLAVTALTLQKLLKRQGAAG" misc_feature complement(<2436086..2436313) /locus_tag="Alide2_2334" /note="LrgA family; Region: LrgA; cl00608" /db_xref="CDD:186103" gene 2436603..2438030 /locus_tag="Alide2_2335" /db_xref="GeneID:10483380" CDS 2436603..2438030 /locus_tag="Alide2_2335" /EC_number="2.6.1.57" /inference="protein motif:PRIAM:2.6.1.57" /note="PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: mpt:Mpe_A0752 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator with aminotransferase domain" /protein_id="YP_004388218.1" /db_xref="GI:330824915" /db_xref="InterPro:IPR000524" /db_xref="InterPro:IPR004839" /db_xref="GeneID:10483380" /translation="MKRYEQLAGDIAESIANGTLPPGARLPSVRQTTANRGVSPSTVF QAYYLLEARGLIQARPRSGYYVASGAAGVSEPEPSRPSGEQQDVEVSELVFQVLEHMR DRDLIPLGSAFPDPSLFPLDKLAMAQSKAMRGLDPWRTVEHLSPGNPELRRQITLRYL ATAFAIDSNELIVTNGAMEALNLSLEVTTRPGDLVAVESPTFYGALQALERLNLRAIE VPTHPRTGVDVPVLATILERHLVKACWFMPNFQNPLGSLMPDEAKQALVQLLAERQIP LIEDDVYGDLYFGTHKPRPAKAWDTQGLVLHCSSFSKTLAPGYRIGWVAAGRFAEAIA RRKLMSSLAAAVPSQEALSRYLQQGGYDRHLRRLRLTLLGNRAAALRSIAKHFPAGTR ASPPEGGYFLWIELPLGVDALALHWLALANHVSSAPGHLFSADHRFRRHLRINFGQAD SSELEMALKLLGKLAGSLVQRTPRS" misc_feature 2436603..2437955 /locus_tag="Alide2_2335" /note="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:31361" misc_feature 2436606..2436803 /locus_tag="Alide2_2335" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(2436606..2436608,2436612..2436614,2436681..2436683, 2436687..2436692,2436714..2436728,2436732..2436737, 2436744..2436746,2436774..2436779,2436783..2436794) /locus_tag="Alide2_2335" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 2436921..2437943 /locus_tag="Alide2_2335" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(2437128..2437136,2437206..2437208,2437356..2437358, 2437449..2437451,2437530..2437532,2437536..2437541, 2437560..2437562) /locus_tag="Alide2_2335" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(2437137..2437139,2437236..2437238,2437428..2437430, 2437554..2437562,2437644..2437646,2437653..2437655) /locus_tag="Alide2_2335" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 2437539..2437541 /locus_tag="Alide2_2335" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(2438119..2438820) /locus_tag="Alide2_2336" /db_xref="GeneID:10483381" CDS complement(2438119..2438820) /locus_tag="Alide2_2336" /inference="protein motif:PFAM:PF00043" /note="PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: dia:Dtpsy_1701 glutathione S-transferase domain protein" /codon_start=1 /transl_table=11 /product="glutathione S-transferase domain-containing protein" /protein_id="YP_004388219.1" /db_xref="GI:330824916" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="GeneID:10483381" /translation="MIDLYYWTTPNGHKITLFLEEAGLPYRIHPVNIGRGEQFAPEFL RIAPNNRIPAIVDQAPADGGAPLSIFESGAILLYLADKTGRFIPQDLRGRNEALQWLF WQMGGLGPMAGQNHHFGQYAPEQIPYAIDRYVKETARLYGVLDKHLAGGRDYIAGEYS IADMACYPWIVPHERQRQDLTDFPHLQAWFERIRARPATERAYALAQTINTAPTVDEA AKKVLFGQDAGTMRR" misc_feature complement(2438200..2438820) /locus_tag="Alide2_2336" /note="GSH-dependent disulfide bond oxidoreductase; Provisional; Region: PRK13972" /db_xref="CDD:172475" misc_feature complement(2438566..2438820) /locus_tag="Alide2_2336" /note="GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen...; Region: GST_N_Ure2p_like; cd03048" /db_xref="CDD:48597" misc_feature complement(order(2438590..2438592,2438758..2438763, 2438770..2438772,2438779..2438781,2438788..2438793)) /locus_tag="Alide2_2336" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48597" misc_feature complement(order(2438605..2438610,2438662..2438670, 2438788..2438790)) /locus_tag="Alide2_2336" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48597" misc_feature complement(order(2438599..2438601,2438608..2438613, 2438617..2438619,2438668..2438670,2438674..2438679)) /locus_tag="Alide2_2336" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48597" misc_feature complement(2438209..2438541) /locus_tag="Alide2_2336" /note="GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen...; Region: GST_C_Ure2p_like; cd03178" /db_xref="CDD:48105" misc_feature complement(order(2438392..2438394,2438404..2438406, 2438422..2438427,2438437..2438439,2438443..2438445, 2438455..2438457,2438467..2438472,2438479..2438481, 2438503..2438508,2438512..2438517,2438521..2438526, 2438533..2438538)) /locus_tag="Alide2_2336" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48105" misc_feature complement(order(2438218..2438220,2438227..2438229, 2438233..2438235,2438314..2438319,2438326..2438328, 2438506..2438511,2438527..2438529)) /locus_tag="Alide2_2336" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48105" misc_feature complement(order(2438305..2438307,2438314..2438316, 2438473..2438475,2438479..2438484,2438491..2438496, 2438506..2438508)) /locus_tag="Alide2_2336" /note="putative substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48105" gene complement(2438891..2440396) /locus_tag="Alide2_2337" /db_xref="GeneID:10483382" CDS complement(2438891..2440396) /locus_tag="Alide2_2337" /inference="protein motif:PFAM:PF05872" /note="KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative; PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; SMART: ATPase, AAA+ type, core" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388220.1" /db_xref="GI:330824917" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR008571" /db_xref="GeneID:10483382" /translation="MAEPLLIAQRDSTQCHLLPGLANRHGLITGATGTGKTVTLQTLA EQFSRIGVPVFMADVKGDLTGISQKGSIGDKLAKTLADRGLATPEPVACPTTLWDVFG EQGHPVRATVSDMGPLLLGRMLNLNETQLGVLNLVFKIADDNGLLLLDLKDLRAMLQH VGDNAKDFTTEYGNISSASVGAIQRGLLQIETQGGDRFFGEPMLNIQDFMQTVDGKGV VNILAADKLMNSPRLYATFLLWMLSDLFEQLPEIGDPEQPKLVFFFDEAHLLFNEAPK VLVERIELVVRLVRSKGVGVYFVTQNPLDIPDSVLGQLGNRVQHALRAFTPRDQKAVK ATATTMRPKAGLDIEAAITELAVGEALVSFLDPKGRPSETERVYVLPPGSQIGPITDG QRRALIAGSLVAGAYDQAVDRESAYEKLRGRADAAATNAAAAQGNAGAQNGGLMDGLN DVLFGSTGPRGGKKDGLVQTMAKSAVRTMGTSLGREILRGVLGGILGGRKR" misc_feature complement(2438951..2440390) /locus_tag="Alide2_2337" /note="Bacterial protein of unknown function (DUF853); Region: DUF853; pfam05872" /db_xref="CDD:114590" misc_feature complement(<2440214..2440324) /locus_tag="Alide2_2337" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 2440469..2441188 /locus_tag="Alide2_2338" /db_xref="GeneID:10483383" CDS 2440469..2441188 /locus_tag="Alide2_2338" /inference="protein motif:HAMAP:MF_00693" /note="TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: dia:Dtpsy_1703 hypothetical protein; PFAM: Protein of unknown function DUF28" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388221.1" /db_xref="GI:330824918" /db_xref="InterPro:IPR002876" /db_xref="GeneID:10483383" /translation="MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARQGGGDPA ANPRLRLAIDKAKAANMPADRIKYNIDKASGTLEGINYEEIRYEGYGIGGAAIIVDTM TDNRVRTVAEVRHAFSKYGGNMGTEGSVAFQFKHAGQLIFAPGTSEDKVMEVALEAGA EDVVTDDDGAIEVLTAPGDFEAVKNALEARGLKAEVAEVTMRPENTVALEGDDAARMQ KLLDVIEDLDDVQEVYHNAEL" misc_feature 2440469..2441185 /locus_tag="Alide2_2338" /note="Domain of unknown function DUF28; Region: DUF28; cl00361" /db_xref="CDD:193787" gene 2441185..2442471 /locus_tag="Alide2_2339" /db_xref="GeneID:10483384" CDS 2441185..2442471 /locus_tag="Alide2_2339" /EC_number="6.3.4.13" /inference="protein motif:TFAM:TIGR00877" /note="TIGRFAM: Phosphoribosylglycinamide synthetase; KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain" /codon_start=1 /transl_table=11 /product="phosphoribosylamine/glycine ligase" /protein_id="YP_004388222.1" /db_xref="GI:330824919" /db_xref="GO:0004637" /db_xref="InterPro:IPR000115" /db_xref="InterPro:IPR020560" /db_xref="InterPro:IPR020561" /db_xref="InterPro:IPR020562" /db_xref="GeneID:10483384" /translation="MKILVIGGGGREHALAWKLSQSPRTTKVYVAPGNGGTALSPRYE NLPITDVVALREWAQANKIGLTVVGPEAPLAAGVVDEFRAHGLRIFGPTKAAAQLESS KAFSKAFMRRHGIPTADYDTFTDPAAAHAFVDRLGAPIVVKADGLAAGKGVVVAMTLQ EAHDAVDFMLVDNKYGVTHNEGGARVVIEEFLEGEEASFIVLCDGKNVLALATSQDHK RLKDGDQGPNTGGMGAYSPAPVVTADVHARAMREVILPTVRGMEKDGIPYTGFLYAGL MIDATGHPKTLEFNCRMGDPETQPILMRLKSDLVEVLGAAVDGRLDQVELQWDRRTAL GVVMAAHGYPDSPRKGDAITGLPQDEDDAMVFHAGTQLGDDGVVRTSGGRVLCVTALA DNVKQAQQRVYDVARGIYFDGAQYRRDIGHRAVKGG" misc_feature 2441185..2442465 /locus_tag="Alide2_2339" /note="phosphoribosylamine--glycine ligase; Provisional; Region: PRK00885" /db_xref="CDD:179154" misc_feature 2441188..2441484 /locus_tag="Alide2_2339" /note="Phosphoribosylglycinamide synthetase, N domain; Region: GARS_N; pfam02844" /db_xref="CDD:190449" misc_feature 2441485..2442078 /locus_tag="Alide2_2339" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 2442178..2442456 /locus_tag="Alide2_2339" /note="Phosphoribosylglycinamide synthetase, C domain; Region: GARS_C; pfam02843" /db_xref="CDD:190448" gene 2442471..2443397 /locus_tag="Alide2_2340" /db_xref="GeneID:10483385" CDS 2442471..2443397 /locus_tag="Alide2_2340" /EC_number="1.3.3.3" /inference="protein motif:HAMAP:MF_00333" /note="HAMAP: Coproporphyrinogen III oxidase; KEGG: dia:Dtpsy_1705 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase" /codon_start=1 /transl_table=11 /product="Coproporphyrinogen-III oxidase" /protein_id="YP_004388223.1" /db_xref="GI:330824920" /db_xref="InterPro:IPR001260" /db_xref="GeneID:10483385" /translation="MAQALNPAATAARVRGYLEGLQARITGALEEVEGEGGARFRSDA WRREAGSPLQGDGITRILEGGRVFERAGCGFSHVSGPQLPPSATQHRPELAGAPFEAM GVSLVFHPRNPYVPTVHMNVRMIAAGDACWFGGGMDLTPYYGFEEDAVHFHRACRDAL APFGEGQYPRFKTWCDEYFFLKHRGEQRGVGGIFFDDFSELGFEQSLAMTQSVGDAFL GAYLPIVQRRMDMPWGERERDFQLYRRGRYVEFNLVWDRGTHFGLQSGGRTESILLSM PPLAAWSYQRESEPGSPEAELTARFLQRRDWV" misc_feature 2442489..2443394 /locus_tag="Alide2_2340" /note="Coproporphyrinogen III oxidase; Region: Coprogen_oxidas; cl00433" /db_xref="CDD:193817" gene 2443481..2444161 /locus_tag="Alide2_2341" /db_xref="GeneID:10483386" CDS 2443481..2444161 /locus_tag="Alide2_2341" /inference="protein motif:TFAM:TIGR00090" /note="KEGG: dia:Dtpsy_1706 iojap-like protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Ribosome-associated, Iojap-like" /codon_start=1 /transl_table=11 /product="iojap-like protein" /protein_id="YP_004388224.1" /db_xref="GI:330824921" /db_xref="InterPro:IPR004394" /db_xref="GeneID:10483386" /translation="MTTTSKSESAAKKDVTKLQRAIVDGLEDVKAQDIQVFNTEYLSP LFERVIVATGGSNRQTKALASSVRDAVREAGFPKPRTEGEDNGEWIIVDCGQAVAHIM QPAIRQYYRLEEIWGEKPVRMKLGAAKPRKITASEDASAAPAKKAAAKKAPAKTAPAK AAAKAPAAKKAAPAAKKPAAKKPAAKKAAVKTVVVNKPVAKKATAKAPAKKAAAKAPA RKAPARKG" misc_feature 2443532..2443828 /locus_tag="Alide2_2341" /note="Domain of unknown function DUF143; Region: DUF143; cl00519" /db_xref="CDD:193850" gene 2444161..2444628 /locus_tag="Alide2_2342" /db_xref="GeneID:10483387" CDS 2444161..2444628 /locus_tag="Alide2_2342" /inference="protein motif:HAMAP:MF_00658" /note="TIGRFAM: Ribosomal RNA large subunit methyltransferase H; HAMAP: SPOUT methyltransferase, predicted; KEGG: aav:Aave_3199 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted" /codon_start=1 /transl_table=11 /product="ribosomal RNA large subunit methyltransferase H" /protein_id="YP_004388225.1" /db_xref="GI:330824922" /db_xref="InterPro:IPR003742" /db_xref="InterPro:IPR016051" /db_xref="GeneID:10483387" /translation="MKLLIVAVGQRVPDWAASAYEDYAKRFPPELKVEFKAVKTEPRG SKTLETLYAAERERIEAAIPRGARVVALDERGTSLTTKALAERLKGWQLAGDDVALVI GGPDGLDPAFRQAAHERIRLSDLTLPHAMVRVLLIEQLYRAWSVNAGHPYHRE" misc_feature 2444161..2444625 /locus_tag="Alide2_2342" /note="Predicted SPOUT methyltransferase; Region: SPOUT_MTase; cl00679" /db_xref="CDD:186141" gene 2444696..2445301 /locus_tag="Alide2_2343" /db_xref="GeneID:10483388" CDS 2444696..2445301 /locus_tag="Alide2_2343" /inference="protein motif:TFAM:TIGR00172" /note="KEGG: xtr:100495456 hypothetical protein LOC100495456; TIGRFAM: Maf-like protein; PFAM: Maf-like protein" /codon_start=1 /transl_table=11 /product="maf protein" /protein_id="YP_004388226.1" /db_xref="GI:330824923" /db_xref="InterPro:IPR003697" /db_xref="GeneID:10483388" /translation="MADFIYLASQSPRRRQLLEQLGVRHELLLPGPDEDAEGLEAVQP GESPAVYVQRVTALKLDAAVLRHARRGLAPAPILCSDTTVALDGRIYGKPEGAQDAAR MLSELAGREHQVLTAVALQAGARRLAALSVSRVRFAAMTPAQIAAYVASGEPIGKAGA YAIQGPAAQYVENMDGSYTGIMGLPLFETAGLLREAGVLRD" misc_feature 2444708..2445274 /locus_tag="Alide2_2343" /note="Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555" /db_xref="CDD:29954" misc_feature order(2444720..2444722,2444735..2444737,2444795..2444797, 2444870..2444872,2444936..2444938,2444972..2444974) /locus_tag="Alide2_2343" /note="active site" /db_xref="CDD:29954" misc_feature order(2444852..2444854,2445071..2445085) /locus_tag="Alide2_2343" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29954" gene complement(2445307..2446026) /locus_tag="Alide2_2344" /db_xref="GeneID:10483389" CDS complement(2445307..2446026) /locus_tag="Alide2_2344" /inference="protein motif:PFAM:PF00027" /note="KEGG: dia:Dtpsy_1709 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp" /codon_start=1 /transl_table=11 /product="Crp/Fnr family transcriptional regulator" /protein_id="YP_004388227.1" /db_xref="GI:330824924" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR001808" /db_xref="GeneID:10483389" /translation="MDIQQFDIPRYLAALPLFQEMTPAELQRLATGCRLRRYARGDTV FRVGMPCEEFHVTVTGQIKLFAISPTGQEKVIELAGPGVSFAEALMFTDKPYIINAQA LADALVLSVGKAAVVREIEDDPRFAMHMLAGISRRLHGLVHDVQAYSLHSGMQRVIGY LLHSLPEDGSSSGHADCREAVALNVSLPVSKATIASRLSITPEYFSRVLHELEEAGLI RIDKRDIHIPNAARLASHTLQ" misc_feature complement(2445340..2445996) /locus_tag="Alide2_2344" /note="cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:31008" misc_feature complement(2445634..2445978) /locus_tag="Alide2_2344" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature complement(order(2445733..2445741,2445766..2445771)) /locus_tag="Alide2_2344" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature complement(order(2445649..2445657,2445667..2445675)) /locus_tag="Alide2_2344" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature complement(2445346..2445483) /locus_tag="Alide2_2344" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(2446233..2447828) /locus_tag="Alide2_2345" /db_xref="GeneID:10483390" CDS complement(2446233..2447828) /locus_tag="Alide2_2345" /EC_number="1.7.99.1" /inference="protein motif:PRIAM:1.7.99.1" /note="KEGG: dia:Dtpsy_1710 cytochrome d1 heme region; PFAM: Cytochrome c, class I" /codon_start=1 /transl_table=11 /product="hydroxylamine reductase" /protein_id="YP_004388228.1" /db_xref="GI:330824925" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10483390" /translation="MPDLPCPALRAAAILALALAGPLHTAARAQAPDAPALYQQHCAS CHGAQRTGLMGPALLPESLERTRPAEVLRVIREGRQATQMAGYAGQLSGAEIQALADW VRTPVVPAPRWGEADIRASRIATPLPADEPVKPKWDADPMNLFVVVEGGDHHVSLLDG DRFTVITRFASRYALHGGPKFTPDGRYVFFGSRDGWITKYDLWRLQVVAEVRAGLNMR NVAVSGDGRWVMAANYLPHSLALFDADLNLVKTYEAATLDGKASSRVSAVYDAAPRNS FVVALKDIPELWEISYDKQAAPIYDGLVHDYKMGEAIAKPGYLGVRRTPLSEPLDDFF FDQGYRHVLGATRPQAGKSEAASAQVVNLDVRRKIADLPIAGMPHLGSGITFAWRGTT VLASPNLGGTGVDVIDMRSWKNLRTIPTPGAGFFMRSHENTPYAWTDSMMSKDAKDRL TIIDKRTLEPVAEVREPGKTLAHIEFTRDGRYALASVWEMDGALIVYDAATFREVKRL PMAKPVGKYNVWNKITRSEGTSH" misc_feature complement(2447514..2447720) /locus_tag="Alide2_2345" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature complement(2446263..2447417) /locus_tag="Alide2_2345" /note="Cytochrome D1 heme domain; Region: Cytochrom_D1; pfam02239" /db_xref="CDD:190255" misc_feature complement(2447133..>2447411) /locus_tag="Alide2_2345" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues...; Region: WD40; cl02567" /db_xref="CDD:194362" gene complement(2447821..2449041) /locus_tag="Alide2_2346" /db_xref="GeneID:10483391" CDS complement(2447821..2449041) /locus_tag="Alide2_2346" /inference="protein motif:PFAM:PF04055" /note="KEGG: dia:Dtpsy_1711 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB" /codon_start=1 /transl_table=11 /product="Radical SAM domain-containing protein" /protein_id="YP_004388229.1" /db_xref="GI:330824926" /db_xref="GO:0003824" /db_xref="GO:0051536" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="GeneID:10483391" /translation="MFRISQYMRELAQAQATGEYPITKDRKARGPVVIWNLIRRCNLT CKHCYALSADHDYAGELSLSEVFTVMDDLKAFGVPALILSGGEPLLRADIFEISARAR QMGFYTGLSTNGTLIDAPMARRIADAGFDYVGISLDGLKATHDKFRRLEGAFDRSLAA IGHLDEVGVKVGLRYTMTAMNGHDLPALLDLMQEVGAHKFYFSHLNYAGRGNIHRDKD ARHQATRAAMDMLFDRAWAAAQAGSMDDYVSGNNDADGPYLLQWVRQHLPQWEEPLRQ RLVAWGGNASGQQIANIDNLGHVHPDTMWWHHDLGCVRDRPFSEIWNDVSDPLMAGLK QRPRPVQGRCGGCRHLAICNGNTRVRAQQLTGDFWFEDPGCYLTDAEVGAASTPFEPV AKRRTGRTIEIAHA" misc_feature complement(2447893..2448954) /locus_tag="Alide2_2346" /note="heme d1 biosynthesis radical SAM protein NirJ; Region: rSAM_NirJ; TIGR04051" /db_xref="CDD:188566" misc_feature complement(2448436..2448939) /locus_tag="Alide2_2346" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(2448514..2448516,2448634..2448636, 2448703..2448711,2448781..2448786,2448790..2448792, 2448895..2448903,2448907..2448909,2448913..2448915, 2448919..2448921)) /locus_tag="Alide2_2346" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature complement(2447917..>2448114) /locus_tag="Alide2_2346" /note="radical SAM additional 4Fe4S-binding domain; Region: rSAM_more_4Fe4S; TIGR04085" /db_xref="CDD:188600" gene complement(2449044..2449523) /locus_tag="Alide2_2347" /db_xref="GeneID:10483392" CDS complement(2449044..2449523) /locus_tag="Alide2_2347" /inference="similar to AA sequence:KEGG:Ajs_1907" /note="KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative AsnC family transcriptional regulator" /protein_id="YP_004388230.1" /db_xref="GI:330824927" /db_xref="GeneID:10483392" /translation="MALDAFDRALIAATQGGLPLVARPYEAVGAMLGVPGEQVRERLA QMLAQGLIRRIGAVPNHYRLGYTANGMSVWDVADERVSELGPLVAQLPGVSHCYRRPR HLPGWPYNLFAMLHGTSREAVEHQAQDIVALLGDACRGHDILYSTAILKKTGLRLKD" misc_feature complement(2449053..2449523) /locus_tag="Alide2_2347" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(2449227..2449517) /locus_tag="Alide2_2347" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(2449504..2451006) /locus_tag="Alide2_2348" /db_xref="GeneID:10483393" CDS complement(2449504..2451006) /locus_tag="Alide2_2348" /inference="similar to AA sequence:KEGG:Dtpsy_1714" /note="KEGG: dia:Dtpsy_1714 putative transcriptional regulator, AsnC family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388231.1" /db_xref="GI:330824928" /db_xref="GeneID:10483393" /translation="MHTAQHHLDLALLNPWQRGFPLCREPFAVIGERLCMDAEDVLSR YQRLQRQGSLSRIGAVFAPGAGGTSLLAAMAVPPERLEAVAAIVSSHAGVNHNYEREH TTNLWFVATGPDAAQVEELLRGIEMDTGLPVQRLPMLRPYRIDTGFDLRASQSPSSGA THWAQTPLQAHDQPLAALAERGLPLVQRPYDHWAEQLQQPVEAVLHTLQRWLDERTVS RFGVVVRHHELGFTANAMTVFDVPKGEVDACGEALARVPGVTLAYQRARTRDWPYNLY CMVHGRDRDSVRATVARAVAQAGLADKPQAMLFSLRRFKQTGARRFTPPAMPRTLPIH QKERCMLTPEDARLIDHLHGGFPLVDRPFAAVGEQLGWSEERVIERLHQLLAQGVLTR FGPLFQIERAGGQFVLAALAVPEERFDVVNAVVNSFPEVAHNYRRTHRLNMWFVVAAE SPALAQDAIARIQDAVGLEVFAFPKEEEYFVELRLPALPQTGERHGAGCL" misc_feature complement(2450557..2450985) /locus_tag="Alide2_2348" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(<2450164..2450490) /locus_tag="Alide2_2348" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(2449621..2449989) /locus_tag="Alide2_2348" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" gene complement(2451010..2452218) /locus_tag="Alide2_2349" /db_xref="GeneID:10483394" CDS complement(2451010..2452218) /locus_tag="Alide2_2349" /inference="similar to AA sequence:KEGG:Ajs_1910" /note="KEGG: ajs:Ajs_1910 cytochrome d1, heme region" /codon_start=1 /transl_table=11 /product="cytochrome d1, heme region" /protein_id="YP_004388232.1" /db_xref="GI:330824929" /db_xref="GeneID:10483394" /translation="MKRRSLLSFAAAAPLLAGGCAATSASSATSKAPALLGTGDLGVV IERAQGALTLVNTSRREAMGRVEGLGDLSHASVVFSRDERFAYVFGRDGALTRVDILE QRITHRVMQAGNSIGGAISADGSLVVAQNYTPGGIKVFDAATLELLSDIPALMPNGER SRVVGLADLPQRRFIYSLFDAEAICIADCSNPRKPQVTTLAGIGRQPYDALLSPNGRH YIAGLFGEDGLAMVDLWDATPRARRILAGYGRGEKPLPVYKMPHLRGWAMAGGRAYLP AIGRHEVLVVDTATWAEVGRIPVAGQPVFVMARPDGRQVWVNFSVPDYNRVQVIDTPS GQVIDTIAPGKAVLHMEFTPRGESVWISCRDDDRVQVYDTHTRQLQASLAVDAPSGIF FTARAQRMGF" sig_peptide complement(2452135..2452218) /locus_tag="Alide2_2349" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.546 at residue 28" misc_feature complement(2451028..2452110) /locus_tag="Alide2_2349" /note="Cytochrome D1 heme domain; Region: Cytochrom_D1; pfam02239" /db_xref="CDD:190255" gene complement(2452215..2452568) /locus_tag="Alide2_2350" /db_xref="GeneID:10483395" CDS complement(2452215..2452568) /locus_tag="Alide2_2350" /inference="similar to AA sequence:KEGG:Dtpsy_1716" /note="KEGG: dia:Dtpsy_1716 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004388233.1" /db_xref="GI:330824930" /db_xref="GeneID:10483395" /translation="MARNAFLSLTLALAAAAAGAQTLAAAPAPERAAQLVRMVRQDCG SCHGMRLTGGLGPALTRQALAAKPPEYLAAVIIHGIPGTPMPPWSALLSGTEALWIAQ QLASGFPEEMRSQAP" sig_peptide complement(2452491..2452568) /locus_tag="Alide2_2350" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.599 at residue 26" misc_feature complement(2452272..>2452451) /locus_tag="Alide2_2350" /note="putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional; Region: PRK14486" /db_xref="CDD:184704" gene complement(2452591..2454315) /locus_tag="Alide2_2351" /db_xref="GeneID:10483396" CDS complement(2452591..2454315) /locus_tag="Alide2_2351" /EC_number="1.7.99.1" /inference="protein motif:PRIAM:1.7.99.1" /note="KEGG: dia:Dtpsy_1717 hydroxylamine reductase; PFAM: Cytochrome c, class I" /codon_start=1 /transl_table=11 /product="hydroxylamine reductase" /protein_id="YP_004388234.1" /db_xref="GI:330824931" /db_xref="InterPro:IPR003088" /db_xref="GeneID:10483396" /translation="MTAKRIARLVALAAATLVSATAMAQGSKPVSEAEKNYQAGSSPL VNEPMYQSMNPKAPPMTQAEFDLARKIYFERCAGCHGVLRKGATGKPLTPDITLAKGT DYLKVFIAYGSPAGMPNWLTSGEMDEKQVDLMARYIQQDPPTPPEWSLADAKNTWKVI IPPEKRPTKKMNKYNIDNLFSTTLRDTGEVALIDGDTKEIINIVKTGYAVHISRMSAS GRYLFVIGRDAKINMIDLWMEKPDNVAEIRVGLEARSVDTSKFKGYEDKLAIAGSYWP PQFTIMDGNTLEPLKIVSTRGMVVGTQEYHPEPRVASIVASHYKPEFVVNVKETGKTM MVDYSNLNALKMTEIGSAPFLHDGGWDSSKRYFMVAANNSNKVAAIDAKDGKLAGLTE VGKIPHPGRGANFIHPKYGPVWATGHLGDETISLIGTDPKKNKQYAFKEVAKLTGPGG GALFIKTHPKSKNLWSDAPLNPDPKVSQAVVVFDINNLDKGYKTLPIAEWADLPNDGG AKRVTQPEYNKAGDEVWFAVWSAKDKASALVVVDDKTLKLKKVIKDPRLITPTGHFNV YNTQHDVY" sig_peptide complement(2454241..2454315) /locus_tag="Alide2_2351" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 at residue 25" misc_feature complement(2453896..2454114) /locus_tag="Alide2_2351" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature complement(2452609..2453799) /locus_tag="Alide2_2351" /note="Cytochrome D1 heme domain; Region: Cytochrom_D1; pfam02239" /db_xref="CDD:190255" gene 2454527..2455354 /locus_tag="Alide2_2352" /db_xref="GeneID:10483397" CDS 2454527..2455354 /locus_tag="Alide2_2352" /EC_number="2.1.1.107" /inference="protein motif:TFAM:TIGR01469" /note="TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: dia:Dtpsy_1718 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase" /codon_start=1 /transl_table=11 /product="uroporphyrin-III C-methyltransferase" /protein_id="YP_004388235.1" /db_xref="GI:330824932" /db_xref="GO:0008168" /db_xref="InterPro:IPR000878" /db_xref="InterPro:IPR006366" /db_xref="GeneID:10483397" /translation="MSFIEDARWFTAAPAAGAPGMPTPPGRVTLVGAGPGDPELLTLR AVKALRGARLVLYDHLVGKEVLRYVAEDADLIYVGKESSHHTLPQESIIDLMVRLARS GRNLVRLKGGDGFIFGRGGEEAQALAEAGIAFDVVPGITAAQGAGACAGIPLTHRDHA ATLVFATGHLRGDNEVALDWEALARPRQTVVIYMGMGTLPVICEQLVRHGLPASMPAA LVEQASLPGQRCITGTLQELPALAQQHRVRPPALIVVGEVVALQPQLMRGMQAATML" misc_feature 2454605..2455321 /locus_tag="Alide2_2352" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene 2455436..2456923 /locus_tag="Alide2_2353" /db_xref="GeneID:10483398" CDS 2455436..2456923 /locus_tag="Alide2_2353" /inference="protein motif:TFAM:TIGR00757" /note="TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: ajs:Ajs_1914 ribonuclease G; SMART: RNA-binding domain, S1" /codon_start=1 /transl_table=11 /product="Rne/Rng family ribonuclease" /protein_id="YP_004388236.1"