LOCUS NC_015213 7197 bp DNA circular BCT 05-JUL-2011 DEFINITION Lactobacillus acidophilus 30SC plasmid pRKC30SC1, complete sequence. ACCESSION NC_015213 VERSION NC_015213.1 GI:325955697 DBLINK Project: 63605 KEYWORDS . SOURCE Lactobacillus acidophilus 30SC ORGANISM Lactobacillus acidophilus 30SC Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. REFERENCE 1 (bases 1 to 7197) AUTHORS Oh,S., Roh,H., Ko,H.J., Kim,S., Kim,K.H., Lee,S.E., Chang,I.S., Kim,S. and Choi,I.G. TITLE Complete genome sequencing of Lactobacillus acidophilus 30SC, isolated from swine intestine JOURNAL J. Bacteriol. 193 (11), 2882-2883 (2011) PUBMED 21478365 REFERENCE 2 (bases 1 to 7197) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (10-MAR-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 7197) AUTHORS Roh,H., Ko,H.-J., Kim,S.-H., Choi,I.-G. and Oh,S. TITLE Direct Submission JOURNAL Submitted (28-FEB-2011) Computational and Synthetic Biology Laboratory, Korea University, Anam Campus, Anam-dong 5-ga, Seongbuk-gu, Seoul 136-713, The Republic of Korea COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP002560. Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Bacteria available from Computational and Synthetic Biology Laboratory at Korea University in South Korea. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7197 /organism="Lactobacillus acidophilus 30SC" /mol_type="genomic DNA" /strain="30SC" /db_xref="taxon:891391" /plasmid="pRKC30SC1" gene complement(join(5827..7197,1..150)) /locus_tag="LAC30SC_10845" /db_xref="GeneID:10271886" CDS complement(join(5827..7197,1..150)) /locus_tag="LAC30SC_10845" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004286326.1" /db_xref="GI:325955698" /db_xref="GeneID:10271886" /translation="MVKKRKIENVADAKSLGEVGQIAKSLSDETWSKFPNFLITNPKY AGSKLSNDAKILYLLMRTAFTFAVKNKQMDDDGNPFIYYTIDKMMDMLGKSRKICTRA KQDLVDIGLIYPDPKSGHFDPRLKANTPKRYYLLVPDYTIGDLQVEKSPKPLGDMDSP KGNSDKNKNKKADKADKSTFPENDKNTTNAKSGSKPLGDMDSPKGNSDKNDNANLRSL ESTIPLEKNENSKSSKALSHMDSPKGNSDKNENKKAEKPDKSTFLKNENFNEVPSALL PLGQSKNELNKDRYIDNIYNSYSYFNTPINLLTNNLTNTFNHFNYFNSNNNNKVKAVK DIKDSTTLEDELNKDIPNMILNSGDYNVLREDSLTILSQWLRDHKKVEEYVERISYAV KQEVTKCSASDQKFYEANKERIMAQVSGLIKSRVNKITHPTPKFQVKKPEDFIFIGVR DKVADILHDHSLLTNPFKYSNKRVEKGTDWSKKHVDTNSNVTTEQLRELFKDLKNK" misc_feature complement(join(7030..7197,1..54)) /locus_tag="LAC30SC_10845" /note="Replication initiator protein A (RepA) N-terminus; Region: RepA_N; pfam06970" /db_xref="CDD:148536" gene 711..1208 /locus_tag="LAC30SC_10850" /db_xref="GeneID:10271881" CDS 711..1208 /locus_tag="LAC30SC_10850" /note="COG0840 Methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004286327.1" /db_xref="GI:325955699" /db_xref="GeneID:10271881" /translation="MAENVRKTKYEIMIDVMQALGVSSFDLHEVEKYLRKIGAKADDR GTYEGSSCKAVVDHFKLVKEISKSDKAMITSLRRQVKDLQEQNKQLTAELVILNHIKA DVKSIKADLIKRSDKAKPTNEHQEKPTYTSVSGARMNNYPYEPTNNATESRSQHQQIH PTTIN" gene complement(1346..2083) /locus_tag="LAC30SC_10855" /db_xref="GeneID:10271882" CDS complement(1346..2083) /locus_tag="LAC30SC_10855" /note="COG0030 Dimethyladenosine transferase (rRNA methylation)" /codon_start=1 /transl_table=11 /product="erythromycin resistance protein" /protein_id="YP_004286328.1" /db_xref="GI:325955700" /db_xref="GeneID:10271882" /translation="MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLT TKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGSIP YNLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAE CFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHA KVNNLSTVTYEQVLSIFNSYLLFNGRK" misc_feature complement(<1790..1990) /locus_tag="LAC30SC_10855" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1832..1840,1907..1912,1958..1978)) /locus_tag="LAC30SC_10855" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(2208..2291) /locus_tag="LAC30SC_10860" /db_xref="GeneID:10271883" CDS complement(2208..2291) /locus_tag="LAC30SC_10860" /codon_start=1 /transl_table=11 /product="leader peptide" /protein_id="YP_004286329.1" /db_xref="GI:325955701" /db_xref="GeneID:10271883" /translation="MLVFKMRNVDKTSTVLKQTKNSDYADK" misc_feature complement(2211..2291) /locus_tag="LAC30SC_10860" /note="23S rRNA methylase leader peptide (ErmC); Region: ErmC; pfam06308" /db_xref="CDD:114997" gene complement(3031..3309) /locus_tag="LAC30SC_10865" /db_xref="GeneID:10271884" CDS complement(3031..3309) /locus_tag="LAC30SC_10865" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="YP_004286330.1" /db_xref="GI:325955702" /db_xref="GeneID:10271884" /translation="MRDYNDLADRFNNNLEKIDSLEKENKSLKNEIKGIYRGFNQFME NTLGATVGQAKKLMNNLVSEIKEFVKGGEFEKIHRNETRTRDRDELSR" gene complement(3391..4464) /locus_tag="LAC30SC_10870" /db_xref="GeneID:10271885" CDS complement(3391..4464) /locus_tag="LAC30SC_10870" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004286331.1" /db_xref="GI:325955703" /db_xref="GeneID:10271885" /translation="MPKNLKNRFRTELIRQRKNARKFGGREKLKKLHDGKYTDYSHIY SDRSYMAHLGRARKFADFCREKGVRDFDQITPEFAKSYLFFERDRGLSASTIGSDALA LNHIMVGGGYWKNFQRLVKSKITGMPRRSTKIYQQREKPLNSTEWRERYPSYYHKYQG QIDTIRAFGLRRRELVGGSSYHGKDGLGKNSLYWSKNGRIMAVTIGKGGKYRQIECRL DLQPQMQKLYGDYIKPPSQMPKNKAEYMRVMRSNKPFYAPYSHSIPSHIFRSDYAQFK LRELASKTFTGQRVYSYAKRIKSPQSGKYHYVRAVKSHDLSKQYQIGIYKAPYGAFYK LSEYMGHNRLDVLQSYLGEGREN" misc_feature complement(<4177..4326) /locus_tag="LAC30SC_10870" /note="site-specific tyrosine recombinase XerC; Reviewed; Region: xerC; PRK00236" /db_xref="CDD:178942" ORIGIN 1 gcttagcttg ctcccagcgt atttaggatt ggtgatcaaa aaattgggga atttagacca 61 agtttcatca cttaaacttt tagcaatttg tcctacttca cccaaacttt tagcatcagc 121 aacgttttca atttttctct ttttgaccat aataaaagcc tcctaaattt gctcgttact 181 aactcacaaa tttaagaggc ttatactttc gagattgttg aattttacgt ttgatttgat 241 ataatcaact tgtagttgaa taagcaactt aaagttcgtg atagggtacc aatctagcaa 301 cgagcttttt ttgtatctaa attttatttt tacaagattt atcttaacac atttaagcat 361 tagtaccgag tccaattcta aatgcttaaa gagctaaaaa atattgactt tcaaaaggca 421 aaaatggaat tggtacgatt gtgaaattcg aggaaacacc aaaaagggaa tccctttgga 481 ataggggttc cctttttgta tacggtcaaa atttcacaat agccattttt tgcctttttc 541 agcccttgcg agagtaaggc tcaaactact ttacataatg aaaaattata cgcagttgga 601 ttggtatagc tggttaattt aaatcatttt tgcgtatcaa aagtaacacc cccacggtct 661 taaaagtagc tctatcatgg tttcaaaatt gagtaaaagg aggtttcagc atggctgaaa 721 acgttagaaa aacgaaatat gaaatcatga ttgatgtgat gcaagcttta ggtgtatcaa 781 gctttgactt gcacgaagtt gaaaagtatt tgcgtaaaat cggcgcaaag gcagacgatc 841 gagggacata cgagggtagc tcttgtaagg cagttgtcga tcattttaag ctagtgaaag 901 agatcagcaa aagcgacaaa gcgatgatca ctagcttgcg cagacaagtc aaagacttgc 961 aagagcaaaa caagcaatta actgctgaac ttgtaatcct taaccacatc aaagcagatg 1021 ttaaaagcat taaggctgat ttaattaaac ggtctgataa ggcaaaacca acaaacgaac 1081 accaagagaa gcctacatac accagcgttt caggcgctcg aatgaataat tatccatacg 1141 aaccaacgaa caatgccaca gaatcgcgct ctcagcacca acaaatccat ccaacaacaa 1201 taaattaatg caaaaaagct tgctaccgta gcagtagcaa gctttttttg ttgctcattc 1261 gatttatata aatcttcata ataatttatc tacattccct ttagtaacgt gtaactttcc 1321 aaatttacaa aagcgactca tagaattatt tcctcccgtt aaataataga taactattaa 1381 aaatagacaa tacttgctca taagtaacgg tacttaaatt gtttactttg gcgtgtttca 1441 ttgcttgatg aaactgattt ttagtaaaca gttgacgata ttctcgattg acccattttg 1501 aaacaaagta cgtatatagc ttccaatatt tatctggaac atctgtggta tggcgggtaa 1561 gttttattaa gacactgttt acttttggtt taggatgaaa gcattccgct ggcagcttaa 1621 gcaattgctg aatcgagact tgagtgtgca agagcaaccc tagtgttcgg tgaatatcca 1681 aggtacgctt gtagaatcct tcttcaacaa tcagatagat gtcagacgca tggctttcaa 1741 aaaccacttt tttaataatt tgtgtgctta aattgtaagg aatactccca acaattttat 1801 acctctgttt gttagggaat tgaaactgta gaatatcttg gtgaattaaa gtgacacgag 1861 tattcagttt taatttttct gacgataagt tgaatagatg actgtctaat tcaatagacg 1921 ttacctgttt acttatttta gccagtttcg tcgttaaatg ccctttacct gttccaattt 1981 cgtaaacggt atcggtttct tttaaattca attgttttat tatttggttg agtacttttt 2041 cactcgttaa aaagttttga gaatatttta tatttttgtt catgtaatca ctcctgaagt 2101 gattacatct gtaaataaat acagaagtta aatgatttgt ttgtaatttt agttatctgt 2161 ttaaaaagtc ataagattag tcactggtag gaattaatct aacgtattta tttatctgcg 2221 taatcactgt ttttagtctg tttcaaaaca gtagatgttt tatctacatt acgcattttg 2281 aataccaaca tgacgaatcc ctccttctta attacaaatt tttagcatct aatttaactt 2341 caattcctat tatacaaaat tttaagataa tgcactatca acacactctt aagtttgctt 2401 ctaagtctta tttccataac tttagggtta accatacgca agaccaatca ctctcggaca 2461 atactcatga ttttaatgat aaaatccatg ttaaacccat agataagaaa tacacctgca 2521 ataaccgtta cctgtttgtg ccaatttaaa aatgcaccac ttttttataa ttaaaacggt 2581 tgaaaactgt accactaata actcacaata gagagatgtc accgtcaagt taaatgtaca 2641 aaataacagc gaaattttta aatctatttc ttatcgatac aaattcctcg taggcgctcg 2701 ggacccctaa tagtatcaag ataagaagaa aagggtattt tgctccgcaa aaaccctttt 2761 aaaaaccgtg ggcttccgcc cacccctgac aaacgcaatg cgtttgatca tgcctctgaa 2821 aagtagcttt atcacgtaat tacttttcgt cgctcagcaa aagctaaatg cctaaaataa 2881 aaagacaagg gtaaacgttg ctcacgttgt tcgcccttgt ctttattatt tatagccatt 2941 ttaaacgctt atgccgacga aaagtaataa tcacgtgtaa aaaatatact cgaattgatt 3001 taaaacgtct tagaacgcaa atatgagctt ctaacgactt aattcatctc tatctcgtgt 3061 tcgagtttca tttctatgaa ttttttcaaa ctctccacct tttacaaact ctttaatttc 3121 gctcacaagg ttattcatga gctttttagc ttgtccaaca gttgcaccaa gggtattttc 3181 cataaactga ttaaaacctc tgtaaatgcc cttaatttcg tttttaagcg atttattctc 3241 tttctccaac gaatcaattt tctctaaatt attattaaat ctatctgcca aatcattgta 3301 atcacgcact acctctttgt atttgccttt tacgtaatca attctttttg gtaaatctgt 3361 ttctgcatat ttttttagtt gctcatttta tcaattttca cgtccctcac ccaaatagct 3421 ttgaagaacg tctaacctgt tgtgccccat gtactcactc aatttataaa atgctccgta 3481 aggtgcttta tagatgccaa tttgatactg tttgctaaga tcatggcttt taaccgctcg 3541 tacatagtga tattttccgc tctgtgggct tttaattcgc ttagcatacg aatatacacg 3601 ttgacctgta aacgtcttag aagccaattc tcgtagctta aattgagcat agtccgagcg 3661 aaaaatgtga gagggaatgg aatgactgta aggcgcatag aaaggcttgt ttgagcgcat 3721 aactcgcata tactctgcct tgttctttgg catttggcta ggcggtttga tgtaatcgcc 3781 ataaagcttc tgcatttgtg gttgtaaatc cagtctgcat tcgatttgac ggtactttcc 3841 gcctttacca atagtcactg ccatgattct gccattttta ctccaataca gcgagttttt 3901 acctagtccg tccttgccat gataactact accgccaact agttccctgc gtctaagtcc 3961 aaaggctcta atggtatcaa tttgcccttg atatttgtgg taataagagg ggtatctttc 4021 acgccattct gtagagttca aaggcttttc tctttgctga taaatctttg ttgatctgcg 4081 gggcattcct gtaattttgg acttcaccaa acgctgaaaa tttttccagt accctccccc 4141 aaccatgatg tgatttagag ctaaagcatc actaccaatc gttgacgcag aaagacctcg 4201 atcacgttca aaaaacaagt aactttttgc aaattctggc gtgatttgat caaagtcacg 4261 tacccctttt tctctgcaaa agtctgcaaa ttttctagca cgtcctaaat gagccatata 4321 agagcgatca gagtagatat gagagtagtc agtgtacttc ccatcgtgca atttttttaa 4381 cttctcacgc ccgccaaatt tgcgggcgtt tttgcgttga cgaataagct ctgtcctaaa 4441 gcgatttttc aaatttttag gcattgttgt acctcatttt tttgttaaat aaacttgggt 4501 caagatatgt cgcagggcta cagccacaag acattattag caagttcacg gattgccatt 4561 tccacgaccc agaaaacaca cttgatatac agccaatgag gggtaaaaac ctaagtatat 4621 caagcgccaa gcaaagatca ttttcttcac tttgacttgc ccaatgagag gtctctcatt 4681 gggctgaatc acccgaacag cagtgtcgca ggatcgttga tataccgatc tatgtccgtc 4741 tagcgccccg aattcgcaat attttttttg gctgatttat cagccaaaaa aataaagctc 4801 ataaggcgct agacggaccg tccactgctg ttcttcaact gcacaatatt cgttccaaga 4861 tcaaacgagc gttgctcgtt tgatcaagtc acttattccg ctcctatgat tttgtttggc 4921 agcaagctgc aaacaaaatc aaagtcgctt tccaacaccc atcaagatag agatagcagt 4981 cattatcatc taccctgttt catcgttaaa tctttcagct aatttagcca cttacaatca 5041 ctcctttcta aaacaataaa aaaagagttt gctttcaaac aaactcaata cctttgacta 5101 gatttgttgg tcagttacct agtactcata tcaacattta gtggcatttt acatttttgc 5161 catcaccttt tttcgcagag tctatccgct aaaaataaaa aacaaaatcg caaacacttg 5221 atttgcgtaa aagttaaaac aacagccata cagacaggct aaaaaggtaa aacaacagca 5281 taattttgct gtaagaaaaa acaagataaa tcaaataaaa tatttatcac taactattat 5341 accatctagc cattgggaga gtagcattta ggcacatttg ctaacaaaaa atctaacata 5401 aaaaacatgt ttttttagta aaaattatca acttttatca accgttgcca atagttaata 5461 ttttttatca aaaatctagt aaaaaatatc aacttttatc aattattatc aacggttagc 5521 aataattgat aactaattga taaaagttgg taacatttat caaatataaa aaaacaccag 5581 ctatccagtt gtagttggtg ttttattcta aatcgctctt atttgcattc taagacgttt 5641 ttatatgctt atgtatgatt atccataatt taattttaaa cgccatagag gggttaatat 5701 tgactaatac gagctaatat ttgctaattg ctaatattca aaatatatca gttaggattg 5761 cattcactct ggcgtgctag agtattttaa ataaaaaaga ctgtcaccat agggtaacag 5821 tcttttttat ttatttttta agtctttgaa taactcccta agttgctctg tagtcacatt 5881 agagttggta tcaacgtgtt ttttgctcca atcagtaccc ttttcgacac gcttattgga 5941 atatttgaat ggattagtta ataggctgtg gtcatgtaaa atatctgcta ccttgtctct 6001 tacaccgata aaaataaaat cctccggttt tttaacttgg aatttaggag taggatgggt 6061 aattttgttg actcttgatt taatcagacc agatacttga gccataatgc gctctttatt 6121 tgcttcatag aacttttgat ctgatgcact gcatttagtt acttcttgtt ttacggcata 6181 gctgatgcgt tcaacatatt cttcgacttt tttatgatct cttagccatt gagacagtat 6241 ggttaggcta tcttcacgca gtacattgta atcaccgctg tttagtatca tgtttggtat 6301 gtctttgttt aattcatctt ctagggttgt agagtcttta atatctttaa ctgctttaac 6361 tttattatta ttattactgt taaagtaatt aaagtgatta aaggtattag taagattatt 6421 agttaataaa ttaataggag tattaaagta actataactg ttatatatat tatctatata 6481 tctatcttta tttagttcat ttttggactg tccaagtggc agtaaggctg aaggcacctc 6541 attaaaattt tcatttttca agaatgttga tttatcgggt ttttcagctt ttttattttc 6601 gtttttatcg gagttccctt ttggactatc catgtggctc aaggcttttg agctttttga 6661 attttcattt ttttctaagg gtattgtaga ttcaaggctt cttagatttg cattatcgtt 6721 tttatcggag ttcccttttg gactatccat gtcccccaag ggtttggagc cactttttgc 6781 gtttgttgta tttttatcat tttctggaaa tgttgatttg tcagctttat cagctttttt 6841 atttttattt ttgtcggagt tcccttttgg actatccatg tctcccaagg gtttaggaga 6901 tttttcaact tgtaaatctc caattgtgta atctggtact aaaagataat aacgttttgg 6961 agtattagct tttaaacgtg gatcaaagtg accacttttt gggtctggat aaattaaccc 7021 aatatcaact aaatcctgct ttgctcgtgt gcagattttg cgacttttgc ccaacatatc 7081 catcattttg tcaatggtgt aataaataaa tggattaccg tcgtcgtcca tttgcttatt 7141 tttgactgca aatgtaaaag cggtgcgcat cagcaagtaa aggatttttg cgtcatt //