LOCUS NC_015183 2823930 bp DNA circular BCT 12-MAY-2011 DEFINITION Agrobacterium sp. H13-3 chromosome, complete genome. ACCESSION NC_015183 VERSION NC_015183.1 GI:325291453 DBLINK Project: 63403 KEYWORDS . SOURCE Agrobacterium sp. H13-3 ORGANISM Agrobacterium sp. H13-3 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium. REFERENCE 1 (bases 1 to 2823930) AUTHORS Wibberg,D., Blom,J., Jaenicke,S., Kollin,F., Rupp,O., Scharf,B., Schneiker-Bekel,S., Sczcepanowski,R., Goesmann,A., Setubal,J.C., Schmitt,R., Puhler,A. and Schluter,A. TITLE Complete Genome Sequencing of Agrobacterium sp H13-3, the former Rhizobium lupini H13-3, Reveals a Tripartite Genome Consisting of a Circular and a Linear Chromosome and an Accessory Plasmid but Lacking a Tumor-Inducing Ti-Plasmid JOURNAL J. Biotechnol. (2011) In press PUBMED 21329740 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 2823930) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (02-MAR-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2823930) AUTHORS Wibberg,D. TITLE Direct Submission JOURNAL Submitted (01-OCT-2010) Center for Biotechnology (CeBiTec), Bielefeld University, Universitaetstrasse 27, Bielefeld, NRW 33594, Germany COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to CP002248. The strain Agrobacterium sp. H13-3 is available from Ruediger Schmitt (Rudy.Schmitt@biologie.uni-regensburg.de), Institute for Biochemistry, Genetics and Microbiology, University of Regensburg, D-93040 Regensburg, Germany. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2823930 /organism="Agrobacterium sp. H13-3" /mol_type="genomic DNA" /strain="H13-3" /db_xref="taxon:861208" gene 224..1045 /locus_tag="AGROH133_02802" /db_xref="GeneID:10268556" CDS 224..1045 /locus_tag="AGROH133_02802" /note="Protein of unknown function DUF299; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277318.1" /db_xref="GI:325291454" /db_xref="GeneID:10268556" /translation="MENKKSFFHLHLISDSTGETLMSAGRAVSAQFHASMPVEHVYPM IRNQKQLAQVVDLIDKEPGIVLYTIVDQQLAEFLDLRCHAIGVPCVNVLEPIIGIFQT YLGAPSRRRVGAQHALNADYFARIEALNFAMDHDDGQMPESYDEADIVIIGISRTSKT PTSIYLANRGIKTANIPVVPNVPLPESLYAATRPLIVGLVATSDRISQVRENRELGTT GGFDSGRYTDRATIMEELKYARALCARNNWPLIDVTRRSIEETAAAILALRPRTR" misc_feature 233..1042 /locus_tag="AGROH133_02802" /note="Domain of unknown function (DUF299); Region: DUF299; cl00780" /db_xref="CDD:186186" gene 1077..1676 /gene="maf" /locus_tag="AGROH133_02803" /db_xref="GeneID:10265759" CDS 1077..1676 /gene="maf" /locus_tag="AGROH133_02803" /note="Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Nucleotide-binding protein implicated in inhibition of septum formation" /codon_start=1 /transl_table=11 /product="Maf-like protein" /protein_id="YP_004277319.1" /db_xref="GI:325291455" /db_xref="GeneID:10265759" /translation="MKQELILASSSASRQMLMRNAGLTFSAIPADIDERALDEQLEKN GAKPEEVALELAKAKALAVSALHPQALVLGCDQTMALGARVYHKPKTMAEAEGHLLSL SGKVHRLNSAAVLARGGDVVWQTISSAELLVRTLSAEFVSRHLQRVGEKALSSVGAYQ LEGEGIQLFTSIEGDYFTILGLPLLPLLMKLRDMDVIDG" misc_feature 1089..1613 /gene="maf" /locus_tag="AGROH133_02803" /note="Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555" /db_xref="CDD:29954" misc_feature order(1101..1103,1116..1118,1176..1178,1248..1250, 1302..1304,1338..1340) /gene="maf" /locus_tag="AGROH133_02803" /note="active site" /db_xref="CDD:29954" misc_feature order(1230..1232,1437..1454) /gene="maf" /locus_tag="AGROH133_02803" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29954" gene 1660..2529 /gene="aroE" /locus_tag="AGROH133_02804" /db_xref="GeneID:10265760" CDS 1660..2529 /gene="aroE" /locus_tag="AGROH133_02804" /EC_number="1.1.1.25" /note="AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate" /codon_start=1 /transl_table=11 /product="Shikimate 5-dehydrogenase" /protein_id="YP_004277320.1" /db_xref="GI:325291456" /db_xref="GeneID:10265760" /translation="MSSMADSRETLTINAFVVGYPIKHSRSPIIHSYWLKKFGIPGSY KAIEVAPDDFPDFITALKEQGPGAAVGGNVTIPHKEAAFKLADSPDELAEELGAANTV WMEEGRLHATNTDGYGFVSNLDERHPGWEKTDRAVVFGAGGASRAVVQSLRDRGIAEI HVLNRTVERAREMADRFGARVFSHPQGALHEVMQDAGLFVNTTSLGMDGTEAPEIDFS PLAASAVVTDIVYVPLRTPILQMAQTQGIATVDGLGMLLHQAKPGFKKWFGKTPEVDD TLRSLIIEDMEKH" misc_feature 1702..2511 /gene="aroE" /locus_tag="AGROH133_02804" /note="shikimate 5-dehydrogenase; Reviewed; Region: aroE; PRK00258" /db_xref="CDD:178949" misc_feature 1708..1965 /gene="aroE" /locus_tag="AGROH133_02804" /note="Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501" /db_xref="CDD:149523" misc_feature 1999..2466 /gene="aroE" /locus_tag="AGROH133_02804" /note="NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065" /db_xref="CDD:133443" misc_feature order(2002..2004,2350..2352,2425..2427,2434..2436) /gene="aroE" /locus_tag="AGROH133_02804" /note="shikimate binding site; other site" /db_xref="CDD:133443" misc_feature order(2080..2082,2089..2091,2149..2154,2263..2271, 2344..2346,2413..2415,2422..2427) /gene="aroE" /locus_tag="AGROH133_02804" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133443" gene 2529..3137 /gene="coaE" /locus_tag="AGROH133_02805" /db_xref="GeneID:10265761" CDS 2529..3137 /gene="coaE" /locus_tag="AGROH133_02805" /EC_number="2.7.1.24" /note="catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis" /codon_start=1 /transl_table=11 /product="Dephospho-CoA kinase" /protein_id="YP_004277321.1" /db_xref="GI:325291457" /db_xref="GeneID:10265761" /translation="MIVIGLTGSIGMGKTTTAKLFAAEGIPVLDSDAVVHDLYSAEAV PMIEAAFPGTTISGTVDRLELGNILRENPANFRKLEAIVHPLVRERQEAFLRKAREEN QNFAVLDIPLLFETGAETRVDKIVVVSCAPEIQRQRVLSRPDMTEEKFEMILARQMPD AEKRRRADFIIDSGNGVEAARDQVREILQRLSAGSGNGEKNA" misc_feature 2529..3107 /gene="coaE" /locus_tag="AGROH133_02805" /note="Dephospho-CoA kinase [Coenzyme metabolism]; Region: CoaE; COG0237" /db_xref="CDD:30586" misc_feature 2535..3065 /gene="coaE" /locus_tag="AGROH133_02805" /note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022" /db_xref="CDD:30195" misc_feature order(2547..2549,2622..2624,2778..2780,2859..2864, 2997..2999) /gene="coaE" /locus_tag="AGROH133_02805" /note="CoA-binding site [chemical binding]; other site" /db_xref="CDD:30195" misc_feature order(2550..2558,2565..2570,2940..2942,3045..3047) /gene="coaE" /locus_tag="AGROH133_02805" /note="ATP-binding [chemical binding]; other site" /db_xref="CDD:30195" gene 3130..3831 /gene="dnaQ" /locus_tag="AGROH133_02806" /db_xref="GeneID:10265762" CDS 3130..3831 /gene="dnaQ" /locus_tag="AGROH133_02806" /EC_number="2.7.7.7" /note="3'-5' exonuclease of DNA polymerase III; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases" /codon_start=1 /transl_table=11 /product="DNA polymerase III epsilon chain" /protein_id="YP_004277322.1" /db_xref="GI:325291458" /db_xref="GeneID:10265762" /translation="MREIIFDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINP EDRKVHPDALAVHGITDDFLKDKPKFAEVVDEIREFFEGARWVAHNATFDMGFINAEF ARLGIAPVSSELVTDTLSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLA EVYIEMIGGRQTALGFGSGSKQQAVTIEDDDVPHEPLQRPHPLPSRLDAETIAAHGKL VLGMGDKAIWNRYQN" misc_feature 3133..3807 /gene="dnaQ" /locus_tag="AGROH133_02806" /note="Proteobacterial; Region: dnaQ_proteo; TIGR01406" /db_xref="CDD:130473" misc_feature 3136..3630 /gene="dnaQ" /locus_tag="AGROH133_02806" /note="DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131" /db_xref="CDD:99835" misc_feature order(3148..3159,3163..3168,3283..3288,3295..3300, 3394..3399,3403..3411,3523..3528,3568..3570,3577..3579, 3592..3594) /gene="dnaQ" /locus_tag="AGROH133_02806" /note="active site" /db_xref="CDD:99835" misc_feature order(3148..3159,3163..3168,3283..3288,3295..3300, 3394..3399,3403..3408,3523..3528,3568..3570,3577..3579, 3592..3594) /gene="dnaQ" /locus_tag="AGROH133_02806" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99835" misc_feature order(3148..3150,3154..3156,3409..3411,3577..3579, 3592..3594) /gene="dnaQ" /locus_tag="AGROH133_02806" /note="catalytic site [active]" /db_xref="CDD:99835" gene complement(3952..4434) /gene="secB" /locus_tag="AGROH133_02807" /db_xref="GeneID:10265763" CDS complement(3952..4434) /gene="secB" /locus_tag="AGROH133_02807" /note="molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA" /codon_start=1 /transl_table=11 /product="Preprotein translocase subunit SecB" /protein_id="YP_004277323.1" /db_xref="GI:325291459" /db_xref="GeneID:10265763" /translation="MTAENGAQGAISPSLNILTQYIKDLSFENPGAPRSLQARDNAPS ININVNVNANPISGSDFDVVLTLNAEAKDGDKVLFAAELVYGGVFRIAGFPQEHMLPV LFIECPRLLFPFARQIIADVTRNGGFPPLMIDPIDFAQMFSQRVAEEQARAKVQAVPN " misc_feature complement(4009..4392) /gene="secB" /locus_tag="AGROH133_02807" /note="Preprotein translocase subunit SecB. SecB is a cytoplasmic component of the multisubunit membrane-bound enzyme termed Sec protein translocase, which is the main constituent of the General Secretory (type II) Pathway involved in translocation of nascent...; Region: Translocase_SecB; cl00251" /db_xref="CDD:185865" misc_feature complement(order(4189..4191,4195..4197,4351..4353, 4363..4365)) /gene="secB" /locus_tag="AGROH133_02807" /note="SecA binding site; other site" /db_xref="CDD:29643" misc_feature complement(order(4180..4182,4186..4188,4192..4194, 4198..4200)) /gene="secB" /locus_tag="AGROH133_02807" /note="Preprotein binding site; other site" /db_xref="CDD:29643" gene complement(4534..5091) /gene="fxsA" /locus_tag="AGROH133_02808" /db_xref="GeneID:10265764" CDS complement(4534..5091) /gene="fxsA" /locus_tag="AGROH133_02808" /note="F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; Protein affecting phage T7 exclusion by the F plasmid" /codon_start=1 /transl_table=11 /product="FxsA cytoplasmic membrane protein" /protein_id="YP_004277324.1" /db_xref="GI:325291460" /db_xref="GeneID:10265764" /translation="MRFSFLPIVILMMPILEIAGFIIVGKTIGLWLTLALVLFTSFLG LLILRLGGIGMVRNLQAAGRTGAQPADELVNGAMRVVAGILLIIPGFITDILGLLLLS KTVRRFFWKILGPRVVVAGSFRQSGQPGGQTGPQPGDFSGFSNGQGNKGSSKVVDLDE EEFHREGPKDSPWSQKPDDRNLPKP" misc_feature complement(4549..5088) /gene="fxsA" /locus_tag="AGROH133_02808" /note="FxsA cytoplasmic membrane protein; Region: FxsA; cl01148" /db_xref="CDD:186358" gene 5233..5931 /locus_tag="AGROH133_02812" /db_xref="GeneID:10265765" CDS 5233..5931 /locus_tag="AGROH133_02812" /note="Mitochondrial import inner membrane translocase, subunit Tim44; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277325.1" /db_xref="GI:325291461" /db_xref="GeneID:10265765" /translation="MGFSDFITLFFLVAAVLIFLQLRSVLGRRTGNEKPPFDPYTPRD VAKGPVTDDNKVVTLPKRSEAEDENRFAEADALAPVDTALNTSLRELMTKDPTFRPKE FLNGARMAYEMIVMGFADGDRKTLKNLLSKEVFDGFEAAISERESRGEVVKSTFVGIE KADITQAGIRDSEEQITLRIVSQLISATYDKDGKLVDGDPDAVAEVDDIWTFSRDVRS RDPNWKLIATESEQ" misc_feature 5233..5928 /locus_tag="AGROH133_02812" /note="Tim44-like domain; Region: Tim44; cl09208" /db_xref="CDD:195818" gene 5928..7040 /gene="mltA" /locus_tag="AGROH133_02814" /db_xref="GeneID:10265766" CDS 5928..7040 /gene="mltA" /locus_tag="AGROH133_02814" /EC_number="3.2.1.-" /note="MltA specific insert domain" /codon_start=1 /transl_table=11 /product="Membrane-bound lytic murein transglycosylase" /protein_id="YP_004277326.1" /db_xref="GI:325291462" /db_xref="GeneID:10265766" /translation="MNTPFSFEEVSFGDLPGWQEDDPRKLFPAMRTILSHLRNSKPYR TGALGLTAGELASLLELADEEQADSPQQARRFFETNCVPFKISPPGGKRGFVTAFYEP ELEVSSVRDDVWKYPVYRRPPELVDIDDENRPSGFDPSYAFGRKGEDGISYFPDRRAI DEGYLQGRGLEIAWARSKVDLFFVHVQGAARLLFPDGEVKRITYAAKAGHPFSPIGRL LLDRGELDPKTISMQTIRKWLADHPDEVDGVLWHNRSYIFFREADVAGLDMGPIAAAK VPLVAGRALAVDRLIHTFGFPFFIHAPSLTHLDNGKPFARLMLALDTGSAIVGPARGD IFTGSGFEAGELAGTVRNDADFYMLLPHVAAKRYRR" misc_feature 5928..7034 /gene="mltA" /locus_tag="AGROH133_02814" /note="Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]; Region: MltA; COG2821" /db_xref="CDD:32649" misc_feature 6234..6707 /gene="mltA" /locus_tag="AGROH133_02814" /note="MltA specific insert domain; Region: MltA; pfam03562" /db_xref="CDD:190674" misc_feature 6774..7007 /gene="mltA" /locus_tag="AGROH133_02814" /note="3D domain; Region: 3D; cl01439" /db_xref="CDD:194136" gene 7037..7606 /locus_tag="AGROH133_02815" /db_xref="GeneID:10265767" CDS 7037..7606 /locus_tag="AGROH133_02815" /note="Smr protein/MutS2 C-terminal; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277327.1" /db_xref="GI:325291463" /db_xref="GeneID:10265767" /translation="MKGSRKLGKEERILWGKVARTARPISGRLEDLLAFDDIEEAAAE PVVPQTANAVFPRMLAEPVDVSPFTPDKKPKIHQPMEKPVKRKLTRGRLPLEGRIDLH GMFQSEAHAVLLDFLLRAHERGLRHVLVITGKGRSIGSDGALKRAVPMWFAKPEYRYL ISSYEDASANHGGDGALYVRLARRKGEKS" misc_feature 7037..7597 /locus_tag="AGROH133_02815" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2840" /db_xref="CDD:32668" misc_feature 7331..7579 /locus_tag="AGROH133_02815" /note="Smr domain; Region: Smr; cl02619" /db_xref="CDD:194381" gene 7603..7968 /locus_tag="AGROH133_02816" /db_xref="GeneID:10265768" CDS 7603..7968 /locus_tag="AGROH133_02816" /note="Lambda repressor-like, DNA-binding, Helix-turn-helix; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_004277328.1" /db_xref="GI:325291464" /db_xref="GeneID:10265768" /translation="MTPFAEAVRLLRERKGVTQKEMAAAIGVSPAYLSALEHGKRGKP SFDLLQRIAGYFNIIWDEAEELFFLAGSSDPKVAIDTVGLPPQYTAFANRLARDIRKL PLSVIEELSAVLQKSRSCD" misc_feature 7612..7965 /locus_tag="AGROH133_02816" /note="Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396" /db_xref="CDD:31586" misc_feature 7615..7788 /locus_tag="AGROH133_02816" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(7627..7629,7639..7641,7714..7716) /locus_tag="AGROH133_02816" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(7636..7638,7711..7713) /locus_tag="AGROH133_02816" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(7657..7662,7693..7695,7702..7704,7714..7719) /locus_tag="AGROH133_02816" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene 8124..10559 /gene="gyrB" /locus_tag="AGROH133_02818" /db_xref="GeneID:10265769" CDS 8124..10559 /gene="gyrB" /locus_tag="AGROH133_02818" /EC_number="5.99.1.3" /note="negatively supercoils closed circular double-stranded DNA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit B" /protein_id="YP_004277329.1" /db_xref="GI:325291465" /db_xref="GeneID:10265769" /translation="MTETSSSEVGANTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGS GLHHMVYEVVDNAIDEALAGHADLVTVTLNADGSVTVTDNGRGIPTDIHSSEGVSAAE VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVA DAPLSVIGEYEGRSGTEVTFLASPDTFTMTDYDFGTLEHRLRELAFLNSGVRIVLTDK RHSDIKQEELLYDGGLEAFVRYLDRAKKPLVDKPVAIHGEKDGITVEVALWWNDSYHE NVLCFTNNIPQRDGGTHMAGFRAALTRQMTSYAETSGIMKREKVSLQGEDCREGLTAI LSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDAKILVGKVVEAAI AREAARKARELTRRKGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSR ETQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIIIM TDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYKVTRGKSVQYLKDEKALEE YLISMGIEDTSLTLGSGEVRIGADLREVILDAVRMRTLIDGLHSRYSRSIVEQAAIAG ALNPELSADAARAQETVAEVARRLDMIAEETERGWSGLVLEDGGLRFERMVRGVKEIS TLDMGLIGSVDARHIDQLAARTRDIYVTPPVLQRKDGTMELAGPRALLDAIFAAGRKG LSMQRYKGLGEMNAEQLWETTLDANVRSLLQVKVNDATDADGLFSRLMGDEVEPRRDF IQENALSVANLDI" misc_feature 8154..10556 /gene="gyrB" /locus_tag="AGROH133_02818" /note="DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939" /db_xref="CDD:184903" misc_feature 8247..>8483 /gene="gyrB" /locus_tag="AGROH133_02818" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" misc_feature 8817..9287 /gene="gyrB" /locus_tag="AGROH133_02818" /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are...; Region: TopoII_Trans_DNA_gyrase; cd00822" /db_xref="CDD:48467" misc_feature 8970..8972 /gene="gyrB" /locus_tag="AGROH133_02818" /note="anchoring element; other site" /db_xref="CDD:48467" misc_feature order(9144..9146,9153..9158,9162..9164) /gene="gyrB" /locus_tag="AGROH133_02818" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48467" misc_feature order(9162..9164,9168..9170) /gene="gyrB" /locus_tag="AGROH133_02818" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48467" misc_feature 9411..9755 /gene="gyrB" /locus_tag="AGROH133_02818" /note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of...; Region: TOPRIM_TopoIIA_GyrB; cd03366" /db_xref="CDD:173786" misc_feature order(9429..9434,9441..9443,9651..9653,9657..9659, 9663..9665) /gene="gyrB" /locus_tag="AGROH133_02818" /note="active site" /db_xref="CDD:173786" misc_feature order(9429..9431,9651..9653) /gene="gyrB" /locus_tag="AGROH133_02818" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173786" misc_feature 10332..10523 /gene="gyrB" /locus_tag="AGROH133_02818" /note="DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986" /db_xref="CDD:189792" gene complement(10663..11265) /locus_tag="AGROH133_02819" /db_xref="GeneID:10265770" CDS complement(10663..11265) /locus_tag="AGROH133_02819" /note="Nitroreductase" /codon_start=1 /transl_table=11 /product="NADPH-flavin oxidoreductase" /protein_id="YP_004277330.1" /db_xref="GI:325291466" /db_xref="GeneID:10265770" /translation="MTNSNSRQSEYPVDPLFLDRWSPRAFDGDAMPNEHLLTILDAAH WAPSASNQQPWRFVYAHKDSEDWPLFVELLMEGNQRWAKNASVLLFVLSRDHNISREG EKKPSATHSFDAGAAWFSLAMQAHLLGYHAHGMAGIFKDQIVEKLDVPDGYKVEAAVA IGTLTDKAVLPDDLAEREVPSKRLPLSDVAFKGRFTGKAD" misc_feature complement(10693..11241) /locus_tag="AGROH133_02819" /note="Nitroreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and...; Region: Nitroreductase_2; cd02138" /db_xref="CDD:48385" misc_feature complement(order(10855..10860,11116..11118,11194..11196, 11200..11202,11206..11208)) /locus_tag="AGROH133_02819" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:48385" gene 11393..12235 /gene="hpcE" /locus_tag="AGROH133_02820" /db_xref="GeneID:10265771" CDS 11393..12235 /gene="hpcE" /locus_tag="AGROH133_02820" /EC_number="4.1.1.68" /note="Fumarylacetoacetate (FAA) hydrolase family, HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene- 1,7-dioic acid hydratase (catechol pathway)" /codon_start=1 /transl_table=11 /product="2-hydroxyhepta-2,4-diene-1,7-dioate isomerase" /protein_id="YP_004277331.1" /db_xref="GI:325291467" /db_xref="GeneID:10265771" /translation="MKLMRVGQPGQEKPAILDAEGKVRDLSAHVKDIGGEAISPEGLK KIAAIDLGTLPIISEERIGACVAGTGKFICIGLNFSDHAAETGATVPPEPVIFMKATS AIVGPNDDVVIPRGSEKTDWEVELGVVIGKTAKYVSEADALDYVAGYCVSHDVSERAF QTERAGQWTKGKSCDTFGPIGPWLVTKDEITDPQNLGMWLRVNGQTMQDGSSKTMVYG VAHVVSYLSQFMSLHPGDVISTGTPPGVGMGQKPPRYLKTGDVVELGIEGLGSQKQTF VADI" misc_feature 11420..12226 /gene="hpcE" /locus_tag="AGROH133_02820" /note="2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179" /db_xref="CDD:30528" misc_feature 11603..12223 /gene="hpcE" /locus_tag="AGROH133_02820" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 12361..13593 /gene="depA" /locus_tag="AGROH133_02821" /db_xref="GeneID:10265772" CDS 12361..13593 /gene="depA" /locus_tag="AGROH133_02821" /note="PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular; Poly-beta-hydroxyalkanoate depolymerase" /codon_start=1 /transl_table=11 /product="intracellular PHB depolymerase" /protein_id="YP_004277332.1" /db_xref="GI:325291468" /db_xref="GeneID:10265772" /translation="MFYHLYEMNHAAMAPLRAGADMMRQACSNPLNPLSSTAFGRSLD AGFEVFERLTRRYIKPEFGLAATTVDNRTVAVTEEIIWSRPFCNLVHFKKELDAARKP DPKVLLVAPMSGHYATLLRGTVEALLPSADIYITDWIDARMVPVTEGTFDLDDYISYV IDMLREIGPGAHVVAVCQPSVPVLAAVSLMEADGDGFAPASMTLMGGPIDTRINPTAV NGLATAKPIEWFRDNVVMQVPWPQPAFGRNVYPGFLQLSGFMSMNLDKHMTAHKDFYL NLVKNDGDSAEKHRDFYDEYLAVMDLTAEFYLQTVETVFIEHALPKGNMQHRGRAVDP AAIRNVALFTVEGENDDISGVGQTKAAHDLCRNIPDEKRGHYMQPDVGHYGVFNGSRF RKEIVPRMVEFIRKNQTV" misc_feature 12361..13578 /gene="depA" /locus_tag="AGROH133_02821" /note="Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]; Region: DepA; COG4553" /db_xref="CDD:34198" misc_feature 12976..13581 /gene="depA" /locus_tag="AGROH133_02821" /note="PHB de-polymerase C-terminus; Region: PHB_depo_C; cl14907" /db_xref="CDD:196868" gene 13662..14429 /locus_tag="AGROH133_02822" /db_xref="GeneID:10265773" CDS 13662..14429 /locus_tag="AGROH133_02822" /note="Protein of unknown function DUF45; Predicted metal-dependent hydrolase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277333.1" /db_xref="GI:325291469" /db_xref="GeneID:10265773" /translation="MFSFLRKSVKSPAPKKVAPSQRTVEVAGRHVPITVKENPRATRI TLRIEPGGRALKLTIPMGLHHGQVDDFLERHQGWIEGKLSKITPDDGLRHGASVDIRG VSHRIHHTGSLRGLTHISKDEDGTAVLKVSGAPEHLRRRVAMFLKKEAKADLERLVAV HASAAGKPVRSISMKDTRSRWGSCSHDGNLSFSWRIVMAPEKVIDYLAAHEVAHLREM NHGPKFWALCEKLCPHTQEAKEWLKRHGSKLHAIDFD" misc_feature 13788..14396 /locus_tag="AGROH133_02822" /note="Protein of unknown function DUF45; Region: DUF45; cl00636" /db_xref="CDD:153902" gene 14532..15194 /gene="trpF" /locus_tag="AGROH133_02823" /db_xref="GeneID:10265774" CDS 14532..15194 /gene="trpF" /locus_tag="AGROH133_02823" /EC_number="5.3.1.24" /note="catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; Phosphoribosylanthranilate isomerase" /codon_start=1 /transl_table=11 /product="N-5'-phosphoribosyl anthranilate isomerase" /protein_id="YP_004277334.1" /db_xref="GI:325291470" /db_xref="GeneID:10265774" /translation="MKPDIKICGLKTPEALERAVRRGASHVGFIFFEKSPRNIEPDIA GRLAEAARGAAKVVAVTVNADNDDLDEIVDLLRPDILQLHGSESPERVLNIKALYGLP VMKALSVRDAADLAKIDPYIGIADRFLLDAKAPAGSDLPGGNGVTFDWTILRSLDGSI DYMLSGGLNKDNVAEALAETGAGGLDLSSGVESAPGVKDLAMIDAFFDVVNDWSKGPK GA" misc_feature 14544..15161 /gene="trpF" /locus_tag="AGROH133_02823" /note="Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric...; Region: PRAI; cd00405" /db_xref="CDD:73365" misc_feature order(14547..14549,14553..14555,14619..14621,14775..14777, 14781..14783,14922..14924,15087..15089,15093..15098) /gene="trpF" /locus_tag="AGROH133_02823" /note="active site" /db_xref="CDD:73365" gene 15163..16416 /gene="trpB" /locus_tag="AGROH133_02824" /db_xref="GeneID:10265775" CDS 15163..16416 /gene="trpB" /locus_tag="AGROH133_02824" /EC_number="4.2.1.20" /note="catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Tryptophan synthase beta chain" /codon_start=1 /transl_table=11 /product="tryptophan synthase subunit beta" /protein_id="YP_004277335.1" /db_xref="GI:325291471" /db_xref="GeneID:10265775" /translation="MIGRKAQRELEVNDAPTPNSFRAGPDEDGRFGIYGGRFVAETLM PLILDLQAEWEKAKTDPEFQAELKYLGAHYTGRPSPLYFAERLTAELGGAKIYFKREE LNHTGSHKINNCLGQILLAKRMGKTRIIAETGAGQHGVASATVAARFGLPCVVYMGAT DVARQAPNVFRMKLLGAEVKPVTAGHGTLKDAMNEALRDWVTNVDDTYYLIGTAAGPH PYPEMVRDFQAVIGEEAKAQMLEAEGRLPDMVIAAVGGGSNAIGIFHPFLDDKSVRIV GVEAGGRGLSGEEHCASITAGSPGVLHGNRTYLLQDADGQIKEGHSISAGLDYPGIGP EHSWLNDIGRVEYVPIMDHEALDAFQMLTRLEGIIPALEPSHALAEVIKRAPKMGKDE IILMNLSGRGDKDVHTVSKFLGMEM" misc_feature 15235..16401 /gene="trpB" /locus_tag="AGROH133_02824" /note="tryptophan synthase, beta chain; Region: PLN02618" /db_xref="CDD:178227" misc_feature 15307..16389 /gene="trpB" /locus_tag="AGROH133_02824" /note="Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446" /db_xref="CDD:107207" misc_feature order(15487..15492,15571..15573,15799..15801,15925..15939, 16279..16281,16357..16359) /gene="trpB" /locus_tag="AGROH133_02824" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107207" misc_feature 15490..15492 /gene="trpB" /locus_tag="AGROH133_02824" /note="catalytic residue [active]" /db_xref="CDD:107207" gene 16376..17260 /gene="trpA" /locus_tag="AGROH133_02825" /db_xref="GeneID:10265776" CDS 16376..17260 /gene="trpA" /locus_tag="AGROH133_02825" /EC_number="4.2.1.20" /note="catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; Tryptophan synthase alpha chain" /codon_start=1 /transl_table=11 /product="tryptophan synthase subunit alpha" /protein_id="YP_004277336.1" /db_xref="GI:325291472" /db_xref="GeneID:10265776" /translation="MSTPSASSSEWKCKTMTARMDKRFADLRAENRPALITYFMGGDP DFETSLGIMKALPEAGADVIELGMPFSDPMADGPAIQLAGQRALKGGQTLKTTLDLAR EFRKEDDATPIVMMGYYNPIYIYGVDKFLDDALAAGVDGLIVVDLPPEMDDELCVPAL ARGVNFIRLATPTTDGKRLPTVLKNTSGFVYYVSMNGITGSALPDPSLISGAVGRIKA HTELPVCVGFGVKTADHAKAIGAVADGVVVGSAIVNQIAGSLTKDGQATADTVPSVTT LVKGLSTGVRASRLAAAE" misc_feature 16475..17080 /gene="trpA" /locus_tag="AGROH133_02825" /note="Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are...; Region: Tryptophan_synthase_alpha; cd04724" /db_xref="CDD:73386" misc_feature order(16568..16570,16601..16603,16613..16615,16946..16948, 16970..16975,17057..17062) /gene="trpA" /locus_tag="AGROH133_02825" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73386" misc_feature order(16568..16570,16601..16603,16727..16729,16970..16972) /gene="trpA" /locus_tag="AGROH133_02825" /note="active site" /db_xref="CDD:73386" misc_feature order(16568..16570,16601..16603,16727..16729) /gene="trpA" /locus_tag="AGROH133_02825" /note="catalytic residues [active]" /db_xref="CDD:73386" misc_feature order(16583..16594,16598..16600,16607..16609,16616..16621, 16733..16735,16742..16744,16808..16813,16817..16819, 16826..16828,16886..16888,16892..16900,16907..16909) /gene="trpA" /locus_tag="AGROH133_02825" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:73386" gene 17288..18181 /gene="accD" /locus_tag="AGROH133_02826" /db_xref="GeneID:10265777" CDS 17288..18181 /gene="accD" /locus_tag="AGROH133_02826" /EC_number="6.4.1.2" /note="catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; Acetyl-CoA carboxylase beta subunit" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase subunit beta" /protein_id="YP_004277337.1" /db_xref="GI:325291473" /db_xref="GeneID:10265777" /translation="MNWITNYVRPRINSMLGRRPEVPENLWIKCPETGEMVFHKDLED NKWVIPASGYHMKMPAKARLVDLFDGGVYEALPQPKVAQDPLKFRDSKKYTDRLRDSR TKTEQEDTILAGVGLLKGLKIVAVVHEFQFMGGSLGIAAGEAIVKAFERAISERCPLV MFPASGGARMQEGILSLMQLPRTTVAVNMLKEAGMPYIVVLTNPTTGGVTASYAMLGD VHIAEPGAEICFAGKRVIEQTIREKLPEGFQTSEYLLEHGMVDMVIDRREIPDTLASL LKIMTKAPAEANAVIPLAASA" misc_feature 17288..18154 /gene="accD" /locus_tag="AGROH133_02826" /note="acetyl-CoA carboxylase subunit beta; Validated; Region: PRK05654" /db_xref="CDD:180184" misc_feature 17291..18142 /gene="accD" /locus_tag="AGROH133_02826" /note="Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl00513" /db_xref="CDD:189112" gene 18267..19646 /gene="folC" /locus_tag="AGROH133_02827" /db_xref="GeneID:10265778" CDS 18267..19646 /gene="folC" /locus_tag="AGROH133_02827" /EC_number="6.3.2.12" /note="Folylpolyglutamate synthetase, folC: FolC bifunctional protein" /codon_start=1 /transl_table=11 /product="Folylpolyglutamate synthase" /protein_id="YP_004277338.1" /db_xref="GI:325291474" /db_xref="GeneID:10265778" /translation="MANTTPERRTEDMTKPAIGEAEQIIEKLMQLHPKGFDLSLDRIS RLLEKLGSPQKRLPPVIHVAGTNGKGSVTAFCRALLEAAGLSVHVHTSPHLVNWHERY RIGVSGEKGRYVDDAVFADALRRIEAANGGQMITVFEILTAAMFLLFAEHPADAAVVE VGLGGRFDATNVINNPAVSVIMPISLDHQAYLGDRVELIAAEKAGIMKSGFPVVIGHQ QYDAALDTLVSTAERLGCPASVYGQDFSAHEEFGRMVYQDEFGLTDAPLPRLPGRHQL ANAAAAIRAVKAAGFEVTERMIEKAMTTVEWPGRLQRVLTGKIAEIAPKDAEIWIDGG HNPGAGEVIAEAMAGFEEKTPRPLFIIAGMINTKDPVGYFKAFADIAEYVFTVPIGGT DAAIDPVVLAHAAFDAGLVAAPTSSLTEALDELSRRFDPEGPPPRILIGGSLYLAGNA LALNGTVPE" misc_feature 18309..19586 /gene="folC" /locus_tag="AGROH133_02827" /note="Folylpolyglutamate synthase [Coenzyme metabolism]; Region: FolC; COG0285" /db_xref="CDD:30633" misc_feature 18453..19094 /gene="folC" /locus_tag="AGROH133_02827" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" gene complement(19696..20016) /gene="trxA" /locus_tag="AGROH133_02828" /db_xref="GeneID:10265779" CDS complement(19696..20016) /gene="trxA" /locus_tag="AGROH133_02828" /note="Thioredoxin domain; Thiol-disulfide isomerase and thioredoxins" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="YP_004277339.1" /db_xref="GI:325291475" /db_xref="GeneID:10265779" /translation="MATVKVDAANFQSEVLESSEPVVVDFWAEWCGPCKMIAPSLEEI SSELAGKVKVAKLNIDENPELAAQFGVRSIPTLAIFKSGEVADIKVGAAPKTALSAWI SGAA" misc_feature complement(19708..19944) /gene="trxA" /locus_tag="AGROH133_02828" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:48496" misc_feature complement(order(19915..19917,19924..19926)) /gene="trxA" /locus_tag="AGROH133_02828" /note="catalytic residues [active]" /db_xref="CDD:48496" gene complement(20094..23651) /gene="addA" /locus_tag="AGROH133_02829" /db_xref="GeneID:10265780" CDS complement(20094..23651) /gene="addA" /locus_tag="AGROH133_02829" /EC_number="3.1.11.5" /note="DNA helicase (double-strand break repair), AddA type, UvrD/REP helicase; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase" /protein_id="YP_004277340.1" /db_xref="GI:325291476" /db_xref="GeneID:10265780" /translation="MMIDPIDHGPATDTPQSWIDWTSDRQRLASDPASSAWVSANAGS GKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMSSRVFDRLAEWATLPDNDLGDR VAAIEGKMPDRIKLAEARRLFAKALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFS VLDDRAATTLLAEARRSLLTAVSTEGDTDLTQSLAYVLDLADESGLESLLTAIIANRS ALRAFLIDAKQADGIDAQLRQAMQIDAGETEETAAAAFWPLPGLSGLSLDTYLTLADE VGGSRVIDVAYALREAKRQTDSVRRMEFIEAALLTAKGEKKSDAYVINKGMQKSAPDL VDALTLARDHVVACRNRYRLVRMLEATKCALVLAERLIGDFEDLKKQRSQLDFEDLIE RAANLLNRDTAGAWVHYKLDQGIDHILVDEAQDTSPVQWSIIQSLAADFFSGESARMG RRTLFAVGDEKQSIYSFQGARPERFSQERDETKRRVDSVEQAFHRIRLPLSFRSTEDV LAAVDQVFSDPKNASGLSADNEPVEHRSNRAGHPGTVEVWDMVAPETAEDEEDWTAPF DALRESAPATIVARRIAARIAGMIGNQTIIEKGVERAIEPGDILVLVRKRHAFVNALT RELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVLPEDDLSLAALLKSPLFNLSED DVFDVAATRSDTESVWQRLQTLSQDENSRFSVVANKLKNFIALSKTATVHDFFAAVLT LHDGRKKFLGRLGNEASDVLDEFLSFALDHERTGLPGLQAFLSVLETDSPEVKREQDK DRGEVRIMTVHASKGLEAPVVFVVDGGSKAFNHSHVPKLRFVEADGDAFPVWLPGSGF SNHLIRADEERLKTAAEDEYRRLLYVAMTRAADHLVVCGYRGQKENPECWHAIVKTAL ADNEKHCQPQQFMADGEEWQGLVWRKSDARSTPAPQRLPEPQTQEEYALPAGLLTPLP ALPSLPRPLSPSGAGTIIDDGADDLAVRSPLFGEKADVSSLALQRGRLVHRMLQALPD FAESEREEAARRYAERAARFWPSAEREHLIRAVLRVMSEPAVQPAFSPNSRAEVSIMG TMTIGRQHYAVSGRIDRLAVDGDRVILVDYKTNRVPPRDAHEIPFSHTAQLAIYREIL SPLYPGKEFVCALIYTENAAFMTVGDDAMMQALAAIKTK" misc_feature complement(20142..23582) /gene="addA" /locus_tag="AGROH133_02829" /note="double-strand break repair helicase AddA, alphaproteobacterial type; Region: addA_alphas; TIGR02784" /db_xref="CDD:188246" misc_feature complement(<23190..23558) /gene="addA" /locus_tag="AGROH133_02829" /note="UvrD/REP helicase; Region: UvrD-helicase; cl14126" /db_xref="CDD:196784" misc_feature complement(21423..>22661) /gene="addA" /locus_tag="AGROH133_02829" /note="UvrD/REP helicase; Region: UvrD-helicase; cl14126" /db_xref="CDD:196784" misc_feature complement(20154..>20357) /gene="addA" /locus_tag="AGROH133_02829" /note="CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641" /db_xref="CDD:193896" gene complement(23641..26826) /gene="addB" /locus_tag="AGROH133_02830" /db_xref="GeneID:10265781" CDS complement(23641..26826) /gene="addB" /locus_tag="AGROH133_02830" /note="addB_alphas: double-strand break repair protein AddB; Inactivated superfamily I helicase" /codon_start=1 /transl_table=11 /product="double-strand break repair protein AddB" /protein_id="YP_004277341.1" /db_xref="GI:325291477" /db_xref="GeneID:10265781" /translation="MTFTHHAKRVLTIAAGTPFLKTLAETLCDGTLTAGYKYDPADPL SLAKVTIYVPTRRSARVLRSEFVDLLGGRSAILPLIRPLGETDDDSGFFEIENPEIMD LAPPISGTGRQIELARLILAWRNSLPDAIRAIHSDSPLVAPASPADAIWLARALGEVI DAMDTEEKEWEALAHLDTGDHAQWWQLTADFLKIASVFWPARLAELNRTSAGRHRNGI LRAEANRLANLPDTGPIVVAGSTGSIPAAADLIASVASLPQGVVVLPGLDLTMPEEQW EAIAEDPTDPSSRTHSQYGLYMLLQKLDIMRDDVVQIGVIDSDLEKRAAVFSAALAPA KSTSDWNRWREDKQPGFFDDAFAAATLIEAANEREEATAIAVALRLALEAPGAGRPSQ AALITPDRGLARRVATELQRFGIEADDSAGTPLSATPQAGLTQLALEAILRPGDPVPV ISLLKHPLSRFGLSLEAFTKASKALELIALRGGRVETEIGNLEAVLDAQLAAQRDDRH PPAWRLALPEGSVDAARDLARRIAVSTEPLGSAFVRRDRSGRSFTDKLPLSDWAERTG RVIEAICADDNNDLATLWSGEAGDKLSGLFGELMESGEILDADGPQWADIFAALVAGE SIKPRSMRHPRIFIFGALEARLQSVDTVVIGGLNEGLWPGQTANNPFLSRNMKTAIGL EPPERRIGQLAHDFEMANGTRQIFYSRALRQGSTPAVASRWLQRLLALGGEDFADQLK KRGETYRHWAALMDASIDQEAAKRPAPKPPADLQPKSYSFSEVGRLRRDPYSIYARRI LKLNPLDGFNRDPNAADRGTLYHAIIERYSREGHIPGTPASLEAMQRILDESFDAEDL PAHVDVIWRPRFEAVARAFIDWEKERHPSIRRSFFEARAGQEIPEAGIRLTGIADRID IKTGGQADIIDYKTGLAPSVNQARALLDPQLALEAAALMRGAFREAGSQTPENLIYVR LRPGTRFFADQVNNEHSNRGGKKAPKSAIELATESIDQLAKFVRSLRDGENGFASRLV PEEQQSYGGEYDHLARVSEWSTAEPGDGDDD" misc_feature complement(24547..26805) /gene="addB" /locus_tag="AGROH133_02830" /note="Inactivated superfamily I helicase [DNA replication, recombination, and repair]; Region: COG3893" /db_xref="CDD:33681" misc_feature complement(23674..26802) /gene="addB" /locus_tag="AGROH133_02830" /note="double-strand break repair protein AddB, alphaproteobacterial type; Region: addB_alphas; TIGR02786" /db_xref="CDD:163020" misc_feature complement(23671..24495) /gene="addB" /locus_tag="AGROH133_02830" /note="CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641" /db_xref="CDD:193896" gene complement(26823..27560) /locus_tag="AGROH133_02831" /db_xref="GeneID:10265782" CDS complement(26823..27560) /locus_tag="AGROH133_02831" /EC_number="2.7.7.13" /note="Nucleotidyl transferase; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF- 2Bgamma/eIF-2Bepsilon)" /codon_start=1 /transl_table=11 /product="nucleotidyltransferase protein" /protein_id="YP_004277342.1" /db_xref="GI:325291478" /db_xref="GeneID:10265782" /translation="MTIKNAMVLAAGLGTRMRPITDTIPKPLVKIAGKPMIDYALDAL VEAGAEKIVVNVHHHADQMIAHLETRTDAEILISDERSQLMNSGGGLAKGLKLLEPGP VFVMNADLFWIGEQLNAVSNLRKLAQFFDATRMDMAMLCVDMDRTTGHNGKRDFNLSS DGRLARYRDGDTNPVVYAGAIAMDSHLLDDAPGDAFNLNIYFDRAIEKERLFGLSLDG HWITVGTPDAIDDAESIIRQFREKRSA" misc_feature complement(26865..27548) /locus_tag="AGROH133_02831" /note="NTP_transferase_like_1 is a member of the nucleotidyl transferase family; Region: NTP_transferase_like_1; cd06422" /db_xref="CDD:133044" misc_feature complement(order(27234..27236,27240..27242,27396..27398, 27528..27536)) /locus_tag="AGROH133_02831" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133044" misc_feature complement(order(26889..26891,26895..26897,27234..27236)) /locus_tag="AGROH133_02831" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:133044" gene complement(27584..29089) /locus_tag="AGROH133_02832" /db_xref="GeneID:10265783" CDS complement(27584..29089) /locus_tag="AGROH133_02832" /note="Bifunctional ATPase/phosphotransferase, cell wall biosynthesis, Uncharacterised P-loop hydrolase UPF0079; Predicted phosphotransferase related to Ser/Thr protein kinases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277343.1" /db_xref="GI:325291479" /db_xref="GeneID:10265783" /translation="MSDDILPITLSLNGEKDTIRLGEDLALALGAGDCLALIGDLGAG KSTLARAFIRAMADAPDLEVPSPTFTIIQTYPTRIPVAHLDLYRLSDVSELDELGIDE MLEDGICLIEWPDIAAAILPPNQTIRLRLEHSGDGRLAVIDAPAKQKARLERVFAIRE FLAKNGKGDATRHFLSGDASTRAYETISTDGPDLILMDWRRPLRGAIVADGKTYAEIA HLAQNARSFVAIGNYLRNSGFCAPEILAADTDQGILLLGDLGRDGVLAPDGTPIEERY LQSVACLAALHKAPEPRKLPVGDGSTYEVPPFDRPAMKIEVSLLVEWYLPHKRGKSLS DTEKRDYYALWDSLIDALSGCESGLLLRDFHSPNILWQEHNAGIRQVGLIDFQDAMIG PTAYDLASIVQDARVTISPELQERLLSHYLDIRRDEPSFDEASFLKAFAIMSAQRNCK LAGIWVRLLERDGKPGYMKHMPRTFRYLSAALSHPELAPLKDWCVHMGMEF" misc_feature complement(28622..29068) /locus_tag="AGROH133_02832" /note="Uncharacterised P-loop hydrolase UPF0079; Region: UPF0079; cl00520" /db_xref="CDD:186054" misc_feature complement(27587..28612) /locus_tag="AGROH133_02832" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" misc_feature complement(27821..28570) /locus_tag="AGROH133_02832" /note="Phosphotransferase enzyme family; Region: APH; pfam01636" /db_xref="CDD:190058" gene complement(29086..31668) /locus_tag="AGROH133_02833" /db_xref="GeneID:10265784" CDS complement(29086..31668) /locus_tag="AGROH133_02833" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Osmosensitive K+ channel histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004277344.1" /db_xref="GI:325291480" /db_xref="GeneID:10265784" /translation="MTVHNSDLREQTVQRVENTHAGVALGAAMARCRLAISAVRTGFS RLPVLMSGTVLAGSANVALAQDGLVAKTGARLFSSGETITYSLFVGMLSATLFSVVWL VRQRGNIEAESGEYRKALAESHHKIAKYEALISDKSRRIVIWDGVDKRPEFLGQLPVE TGAPQADHDFLAFGRWLKPSSASQLEKSLEKLRSHAQSFDLTIETQRGEVIEVQGRVS GGNAFARFVALNNLRAELAELQVERERLIASVSTFQELLDSIEQPVWRRNGEGELIWV NHAYAHAVDARDAEQTIQEKRELLNTVTRQKIRAAATPSSPYHDRISTVVSGNRTFFD VVDIKTAGGSAGIAIDATEAETTREEMKRVLKSHAETLDHLATPVAIFDGRQRLQFYN QAFASLWGFDLVFLESGPDNSELLDRLRTAGKLPEQLNWKNWKETALSVYRSLDTKTD LWHLPNGQTLRVIATAHPQGGATWVFENLTEQVDLQMRYNTLVKVQGETIDHLAEGVA VFGADGRIRLSNPAFRALWGVTAEQAETGTHIRAVEAACTQSYDKPDGWRSFSQFITS FDDERPSRQGTLELLSGLVLDYAIIPLPDAQTMLTFVNMTDSVRAERALKEKNDALLK ADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGIGELTDRQAEYLDHISTSSSVLLT IVNDILDLATVDAGIMQLNYSENDLNELLDDVSVQIADRLQESGISLEIVAPAHLGSL VADHQRLKQILIKLLTNAINFAPEGSSVQLSCQRSEGDFLFSVADKGPGIPEDMLKAV FDRFETRGNGGRRTGAGLGLSIVESFVSLHHGTVSIDSRPGNGTIVTCRIPSGVHPHS IAAE" misc_feature complement(30220..30555) /locus_tag="AGROH133_02833" /note="PAS fold; Region: PAS_7; pfam12860" /db_xref="CDD:193334" misc_feature complement(29125..30171) /locus_tag="AGROH133_02833" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature complement(29596..29793) /locus_tag="AGROH133_02833" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(29608..29610,29620..29622,29629..29631, 29641..29643,29650..29652,29662..29664,29719..29721, 29728..29730,29740..29742,29749..29751,29761..29763, 29773..29775)) /locus_tag="AGROH133_02833" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(29755..29757) /locus_tag="AGROH133_02833" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(29125..29430) /locus_tag="AGROH133_02833" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(29137..29139,29143..29148,29161..29163, 29167..29169,29215..29226,29299..29304,29308..29310, 29314..29316,29320..29322,29389..29391,29398..29400, 29410..29412)) /locus_tag="AGROH133_02833" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(29398..29400) /locus_tag="AGROH133_02833" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(29218..29220,29224..29226,29302..29304, 29308..29310)) /locus_tag="AGROH133_02833" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(31665..31832) /locus_tag="AGROH133_02834" /db_xref="GeneID:10265785" CDS complement(31665..31832) /locus_tag="AGROH133_02834" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277345.1" /db_xref="GI:325291481" /db_xref="GeneID:10265785" /translation="MRLTKRAASFLRAPFPQIYEDGIVIELDSDTPKGGGDEMGCLVE DAAHRTETDRG" gene complement(31877..33277) /gene="ahcY" /locus_tag="AGROH133_02835" /db_xref="GeneID:10265786" CDS complement(31877..33277) /gene="ahcY" /locus_tag="AGROH133_02835" /EC_number="3.3.1.1" /note="catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosylhomocysteine hydrolase" /codon_start=1 /transl_table=11 /product="S-adenosyl-L-homocysteine hydrolase" /protein_id="YP_004277346.1" /db_xref="GI:325291482" /db_xref="GeneID:10265786" /translation="MSLEKDYIIADINLAAFGRKELDIAETEMPGLMSCRKEFGESKP LKGARITGSLHMTIQTGVLIETLKELGADIRWASCNIFSTQDHAAAAIAAAGIPVFAV KGESLTEYWEYTDKIFQWTDGGLSNMILDDGGDATMYILLGARAEAGEDVLSNPGSEE EEILFAQINKRLKASPGWFTKQRDALKGVTEETTTGVHRLYDLAKKGLLPFPAINVND SVTKSKFDNKYGCKESLVDGIRRATDVMMAGKVAVVCGYGDVGKGSAASLQGAGARVK VTEIDPICALQAAMDGFEVVRLEDVVSSADIFITTTGNKDVIRIEHMREMKDMAIVGN IGHFDNEIQVASLRNLKWTNIKPQVDMIEFPKGNRIILLSEGRLLNLGNATGHPSFVM SASFTNQVLGQIELFTKPGEYKNEVYVLPKHLDEKVARLHLEKLGVRLTELSDLQADY IGISKQGPFKAEHYRY" misc_feature complement(31898..33277) /gene="ahcY" /locus_tag="AGROH133_02835" /note="S-adenosyl-L-homocysteine hydrolase; Provisional; Region: PRK05476" /db_xref="CDD:180110" misc_feature complement(31904..33244) /gene="ahcY" /locus_tag="AGROH133_02835" /note="S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado...; Region: AdoHcyase; cd00401" /db_xref="CDD:29522" misc_feature complement(order(31925..31930,31937..31942,31949..31951, 31955..31963,31967..31972,31979..31981,32021..32023, 32105..32107,32123..32125,32216..32218,32258..32260, 32291..32299,32330..32341,32390..32395,32402..32413, 32417..32443,32462..32467,32528..32542,32546..32548, 32555..32560,32579..32584,32591..32593,32603..32605, 32618..32620,32624..32626,32672..32677,32684..32686, 33194..33199,33218..33220)) /gene="ahcY" /locus_tag="AGROH133_02835" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:29522" misc_feature complement(order(32117..32119,32600..32602,32612..32614, 32699..32704,32882..32884,33101..33103,33107..33109, 33113..33115)) /gene="ahcY" /locus_tag="AGROH133_02835" /note="active site" /db_xref="CDD:29522" misc_feature complement(order(32117..32119,32138..32140,32144..32146, 32267..32275,32327..32329,32342..32347,32438..32446, 32498..32506,32510..32512,32597..32599,32693..32701)) /gene="ahcY" /locus_tag="AGROH133_02835" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:29522" gene complement(33406..33681) /gene="ptsH" /locus_tag="AGROH133_02836" /db_xref="GeneID:10265787" CDS complement(33406..33681) /gene="ptsH" /locus_tag="AGROH133_02836" /EC_number="2.7.11.-" /note="Phosphotransferase system, phosphocarrier HPr protein, PTS_HPr_family: phosphocarrier, HPr family; Phosphotransferase system, HPr-related proteins" /codon_start=1 /transl_table=11 /product="phosphocarrier protein HPr" /protein_id="YP_004277347.1" /db_xref="GI:325291483" /db_xref="GeneID:10265787" /translation="MSPHSRELPIINKRGLHARASAKFVQMVEGFDATITVSKDGMTV GGTSIMGLMMLAASPGCSVYVEASGNQAEEALAALEALVADRFGEEA" misc_feature complement(33469..33654) /gene="ptsH" /locus_tag="AGROH133_02836" /note="Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367" /db_xref="CDD:29444" misc_feature complement(order(33520..33525,33532..33543,33595..33597, 33604..33606,33616..33621,33625..33630,33634..33636)) /gene="ptsH" /locus_tag="AGROH133_02836" /note="regulatory protein interface [polypeptide binding]; other site" /db_xref="CDD:29444" misc_feature complement(33631..33633) /gene="ptsH" /locus_tag="AGROH133_02836" /note="active site" /db_xref="CDD:29444" misc_feature complement(33538..33540) /gene="ptsH" /locus_tag="AGROH133_02836" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:29444" gene complement(33694..34095) /locus_tag="AGROH133_02837" /db_xref="GeneID:10265788" CDS complement(33694..34095) /locus_tag="AGROH133_02837" /EC_number="2.7.1.69" /note="Phosphotransferase system, fructose subfamily IIA component, PTS system fructose IIA component; Phosphotransferase system, mannose/fructose- specific component IIA" /codon_start=1 /transl_table=11 /product="PTS system, IIA component" /protein_id="YP_004277348.1" /db_xref="GI:325291484" /db_xref="GeneID:10265788" /translation="MIGLVLVTHGKLAEEFRHALEHVVGPQKLIETVCIGPEDDMDQR RQDIIDAVTRVNDGNGVIILTDMFGGTPSNLAISVMNNGNVEVIAGVNLPMLIKLAGV RSEDNMDKALQDASDAGRKYINVASRVLSGK" misc_feature complement(33733..34092) /locus_tag="AGROH133_02837" /note="PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_man; cd00006" /db_xref="CDD:28890" misc_feature complement(order(33793..33795,33883..33885,33991..33993, 34024..34029,34069..34071)) /locus_tag="AGROH133_02837" /note="active pocket/dimerization site; other site" /db_xref="CDD:28890" misc_feature complement(order(33883..33885,33898..33900,34069..34071)) /locus_tag="AGROH133_02837" /note="active site" /db_xref="CDD:28890" misc_feature complement(34069..34071) /locus_tag="AGROH133_02837" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:28890" gene complement(34221..34685) /locus_tag="AGROH133_02838" /db_xref="GeneID:10265789" CDS complement(34221..34685) /locus_tag="AGROH133_02838" /EC_number="2.7.3.-" /note="HPr kinase/phosphorylase; HPrK/P; Serine kinase of the HPr protein, regulates carbohydrate metabolism" /codon_start=1 /transl_table=11 /product="HPr kinase" /protein_id="YP_004277349.1" /db_xref="GI:325291485" /db_xref="GeneID:10265789" /translation="MNAERFNLHATAIVVDNTGILFTGPSGSGKSELAFSFLTEAQRC GLPAALIADDQIFVYRDGENIIAERPEAIAGLLELRGSGIVNVNSVPSAGLNFAVTTV LSPENPRLPEDDEVLLLPCGGHLPLLRIPLSSLTPYGKFAALAQNLFKTNVK" misc_feature complement(<34416..34676) /locus_tag="AGROH133_02838" /note="HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-...; Region: HprK_C; cd01918" /db_xref="CDD:29833" misc_feature complement(order(34419..34421,34434..34442,34452..34454, 34470..34472,34515..34517,34521..34526,34569..34571, 34581..34583,34596..34598,34605..34610,34659..34661, 34665..34667)) /locus_tag="AGROH133_02838" /note="Hpr binding site; other site" /db_xref="CDD:29833" misc_feature complement(order(34446..34448,34452..34454,34524..34529, 34593..34601,34605..34607,34659..34661)) /locus_tag="AGROH133_02838" /note="active site" /db_xref="CDD:29833" misc_feature complement(order(34416..34421,34428..34436,34440..34442, 34458..34460,34470..34472,34557..34559,34566..34571, 34581..34583,34587..34589)) /locus_tag="AGROH133_02838" /note="homohexamer subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:29833" gene complement(34675..36465) /gene="chvG" /locus_tag="AGROH133_02839" /db_xref="GeneID:10265790" CDS complement(34675..36465) /gene="chvG" /locus_tag="AGROH133_02839" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004277350.1" /db_xref="GI:325291486" /db_xref="GeneID:10265790" /translation="MLKKTPETVSDSDDAEDRGSERRHRIHPLTIVRRIFGNAVFSSL TRRILFFNVAATVVLVGGILYLNQFREGLIDARVESLLTQGEIIAGAISASASVDTNS ITINPEKLLELQAGQSITPAPNDEDLSFPINPERVAPVLRRLISPTRTRARLFDADAN LLLDSRHLYSRGQVLRFDLPPVTPETQTWGEWFTSMFNRMLQPSSLPQYKEAPGGDGS IYPEVMNALTGVRGAVVRVTEKGELIVSVAVPVQRFRAVLGVLLLSTQAGDIDKIVHA ERLAIMRVFGIATLVNIVLSLLLSSTIATPLRRLSAAAIRVRRGARTREEIPDFSARQ DEIGNLSIALREMTTALYDRIDAIESFAADVSHELKNPLTSLRSAVETLPRAKTEESK QRLTEIIFHDVRRLDRLISDISDASRLDAELARVDASPLDLDVLMKGLVDISRQISTK KKSVAIDYVADRKAGAKTSFVVNGHDLRIGQIVTNLIENARSFVSEESGRITVRLSRH KDRCIVQVEDNGPGIQAEDIDRIFERFYTDRPASEGFGQNSGLGLSISRQIAEAHGGS LRAENVVDKYGVISGARFTLSLPAAETHER" misc_feature complement(34690..35727) /gene="chvG" /locus_tag="AGROH133_02839" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature complement(35413..35625) /gene="chvG" /locus_tag="AGROH133_02839" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(35212..35403) /gene="chvG" /locus_tag="AGROH133_02839" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(35227..35229,35239..35241,35248..35250, 35260..35262,35269..35271,35281..35283,35329..35331, 35338..35340,35350..35352,35359..35361,35371..35373, 35383..35385)) /gene="chvG" /locus_tag="AGROH133_02839" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(35365..35367) /gene="chvG" /locus_tag="AGROH133_02839" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(34702..35031) /gene="chvG" /locus_tag="AGROH133_02839" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(34714..34716,34720..34725,34753..34755, 34759..34761,34807..34818,34897..34902,34906..34908, 34912..34914,34918..34920,34990..34992,34999..35001, 35011..35013)) /gene="chvG" /locus_tag="AGROH133_02839" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(34999..35001) /gene="chvG" /locus_tag="AGROH133_02839" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(34810..34812,34816..34818,34900..34902, 34906..34908)) /gene="chvG" /locus_tag="AGROH133_02839" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(36518..37267) /gene="chvI" /locus_tag="AGROH133_02842" /db_xref="GeneID:10265791" CDS complement(36518..37267) /gene="chvI" /locus_tag="AGROH133_02842" /note="CheY-like, Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004277351.1" /db_xref="GI:325291487" /db_xref="GeneID:10265791" /translation="MTMETNYMQTIALVDDDRNILTSVSIALEAEGYRVETYTDGASA LDGLIARPPQLAIFDIKMPRMDGMELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGA DDFITKPFSQRLLVERVKAILRRASSREASAATGGSTLKPTADQQARTLERGQLAMDQ ERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDALMDAAYDEQVYVDDRTIDSHI KRLRKKFKLVDGDFDMIETLYGVGYRFREAA" misc_feature complement(36521..37237) /gene="chvI" /locus_tag="AGROH133_02842" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature complement(36899..37231) /gene="chvI" /locus_tag="AGROH133_02842" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(36941..36946,36953..36955,37010..37012, 37067..37069,37091..37093,37220..37225)) /gene="chvI" /locus_tag="AGROH133_02842" /note="active site" /db_xref="CDD:29071" misc_feature complement(37091..37093) /gene="chvI" /locus_tag="AGROH133_02842" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(37067..37075,37079..37084)) /gene="chvI" /locus_tag="AGROH133_02842" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(36938..36946) /gene="chvI" /locus_tag="AGROH133_02842" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(36533..36817) /gene="chvI" /locus_tag="AGROH133_02842" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(36542..36544,36557..36559,36593..36598, 36620..36622,36629..36631,36683..36688,36743..36745)) /gene="chvI" /locus_tag="AGROH133_02842" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 37586..39196 /gene="pckA" /locus_tag="AGROH133_02844" /db_xref="GeneID:10265792" CDS 37586..39196 /gene="pckA" /locus_tag="AGROH133_02844" /EC_number="4.1.1.49" /note="PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; Phosphoenolpyruvate carboxykinase (ATP)" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxykinase" /protein_id="YP_004277352.1" /db_xref="GI:325291488" /db_xref="GeneID:10265792" /translation="MNELGVHNPANGVAELGLGEASRVFYNLNESELYEEAIRNGEAE LTADGALRAVTGQHTGRSPKDKFVVRDASTEDTIWWDNNKPLSPENFELLRQDMLAHA AGKTLYVQDLIGGADEENALSTRVVTELAWHSLFIRNLLIRPKREKLAGFKQKLTIIN LPSFKADPARHGVRSETVIACDLTNGLVLIGGTSYAGENKKSVFTVLNYLLPAKGVMP MHCSANVGPEGDSAVFFGLSGTGKTTLSADPSRTLIGDDEHGWGEHGIFNFEGGCYAK AIKLSAEAEPEIYAATRRFGTVLENVVLDENRVPDFNDNSLTENTRSAYPLHFIPNAS ETGIAGHPKTIIMLTADAFGVLPPIARLTPEQAMYHFLSGYTAKVAGTEKGVTEPEAT FSTCFGAPFMPRHPAEYGNLLRELIGKHGVDCWLVNTGWTGGAYGIGKRMPIKATRAL LTAALTGELKGAEFRTDANFGFAVPLSLEGVDAAILDPRSTWADGAAYDAQAKKLVSM FVTNFTKFEDHVDSKVRDAAPGLLLAAE" misc_feature 37649..39166 /gene="pckA" /locus_tag="AGROH133_02844" /note="Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and...; Region: PEPCK_ATP; cd00484" /db_xref="CDD:29830" misc_feature order(37766..37768,38168..38170,38174..38176,38183..38188, 38243..38245,38297..38317,38351..38356,38405..38407, 38411..38413,38438..38440,38549..38551,38906..38908, 38915..38917,38924..38926) /gene="pckA" /locus_tag="AGROH133_02844" /note="active site" /db_xref="CDD:29830" misc_feature order(37766..37768,38168..38170,38174..38176,38183..38188, 38405..38407,38549..38551) /gene="pckA" /locus_tag="AGROH133_02844" /note="substrate-binding site [chemical binding]; other site" /db_xref="CDD:29830" misc_feature order(38186..38188,38243..38245,38312..38314,38351..38356, 38405..38407) /gene="pckA" /locus_tag="AGROH133_02844" /note="metal-binding site [ion binding]" /db_xref="CDD:29830" misc_feature order(38297..38317,38438..38440,38906..38908,38924..38926) /gene="pckA" /locus_tag="AGROH133_02844" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29830" gene 39309..39743 /locus_tag="AGROH133_02845" /db_xref="GeneID:10265793" CDS 39309..39743 /locus_tag="AGROH133_02845" /note="Class I peptide chain release factor, Peptidyl-tRNA hydrolase domain; Protein chain release factor B" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase domain protein" /protein_id="YP_004277353.1" /db_xref="GI:325291489" /db_xref="GeneID:10265793" /translation="MASAPLYISNRITIAGWELTEQFVLAGGPGGQNVNKVSTAVQLF FDIANSPSLPERVKANALRLGGRRVSKEGVLMIEASRFRSQERNREDARERLKELILE AAAPSPPVRKATKPTKGSVERRLKAKSGRSDVKKMRGKPSGD" misc_feature 39321..39740 /locus_tag="AGROH133_02845" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" gene 39829..40278 /locus_tag="AGROH133_02846" /db_xref="GeneID:10265794" CDS 39829..40278 /locus_tag="AGROH133_02846" /note="Transport-associated; Uncharacterized protein containing LysM domain" /codon_start=1 /transl_table=11 /product="LysM domain/BON superfamily protein" /protein_id="YP_004277354.1" /db_xref="GI:325291490" /db_xref="GeneID:10265794" /translation="MGLFNFIKEAGKKLGIGGDDAPDVEAVKKELASHDLGTDKVQVE VVNDKVVLKGEVADQSIFEKAVIAVGNTLGISKVEAGELTVAEAPAKEPVFYTVKKGD NLWKIAEAQYGKANGGKNNIIFEANKPMLTHPDKIYPGQVLRIPDLA" misc_feature 39829..40269 /locus_tag="AGROH133_02846" /note="LysM domain/BON superfamily protein; Provisional; Region: PRK11198" /db_xref="CDD:183034" misc_feature 40108..40266 /locus_tag="AGROH133_02846" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature order(40114..40116,40123..40125,40132..40134,40147..40149, 40171..40173) /locus_tag="AGROH133_02846" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" gene complement(40327..41295) /gene="panK" /locus_tag="AGROH133_02847" /db_xref="GeneID:10265795" CDS complement(40327..41295) /gene="panK" /locus_tag="AGROH133_02847" /EC_number="2.7.1.33" /note="catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; Panthothenate kinase" /codon_start=1 /transl_table=11 /product="pantothenate kinase" /protein_id="YP_004277355.1" /db_xref="GI:325291491" /db_xref="GeneID:10265795" /translation="MPSTLDHFRPDEYSPYHFFSSEEWAKFRADTPLTLSADEVKRLR SLDDPIDLDEVRRIYLSLSRLLSSHVEASQLLFEQRNRFLNMADVNKTPFVIGIAGSV AVGKSTTARILKELLARWPYSPKVDLITTDGFLYPNEVLRRENLMERKGFPESYDIGA LLRFLSAIKAGQPNVKAPRYSHLTYDVLPNEFTVIDQPDILIFEGINVLQSRDLPAGG RIVPIVSDFFDFSIYIDADEDFIHNWYVNRFMNLRQTAFRDPNSFFNRYASISEEAAL SIAEGLWQNINLKNLRQNIVPTRPRADLILRKGKNHLIDTVALRKL" misc_feature complement(40330..41277) /gene="panK" /locus_tag="AGROH133_02847" /note="pantothenate kinase; Provisional; Region: PRK05439" /db_xref="CDD:180082" misc_feature complement(40339..41013) /gene="panK" /locus_tag="AGROH133_02847" /note="Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in...; Region: PanK; cd02025" /db_xref="CDD:30198" misc_feature complement(order(40360..40362,40372..40374,40552..40554, 40564..40566,40969..40980,40987..40989)) /gene="panK" /locus_tag="AGROH133_02847" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:30198" misc_feature complement(order(40360..40362,40540..40542,40552..40554, 40750..40752,40963..40965,40975..40980)) /gene="panK" /locus_tag="AGROH133_02847" /note="CoA-binding site [chemical binding]; other site" /db_xref="CDD:30198" misc_feature complement(order(40684..40686,40975..40977)) /gene="panK" /locus_tag="AGROH133_02847" /note="Mg2+-binding site [ion binding]; other site" /db_xref="CDD:30198" gene complement(41325..41648) /gene="hisE" /locus_tag="AGROH133_02848" /db_xref="GeneID:10265796" CDS complement(41325..41648) /gene="hisE" /locus_tag="AGROH133_02848" /EC_number="3.6.1.31" /note="catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; Phosphoribosyl-ATP pyrophosphohydrolase" /codon_start=1 /transl_table=11 /product="phosphoribosyl-ATP pyrophosphatase" /protein_id="YP_004277356.1" /db_xref="GI:325291492" /db_xref="GeneID:10265796" /translation="MSAFSLSDLERIVATRAAASPDESWTAKLVAAGQERAAKKLGEE AVEAVIAAIAKDRDGLKNEAADLLYHLLVVLKIADIPLADVFAELERRTGQTGLAEKA ARPTS" misc_feature complement(41334..41645) /gene="hisE" /locus_tag="AGROH133_02848" /note="MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345" /db_xref="CDD:193780" gene complement(41665..42441) /gene="hisF" /locus_tag="AGROH133_02849" /db_xref="GeneID:10265797" CDS complement(41665..42441) /gene="hisF" /locus_tag="AGROH133_02849" /EC_number="4.1.3.-" /note="catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; Imidazoleglycerol-phosphate synthase" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisF" /protein_id="YP_004277357.1" /db_xref="GI:325291493" /db_xref="GeneID:10265797" /translation="MTLKARVIPCLDVKDGRVVKGVNFVDLIDAGDPVEAAKAYDAAG ADELCFLDITASSDNRDTIFDVVSRTADHCFMPLTVGGGVRAVADIRKLLLCGADKVS INSAAVNDPDFVAQAADKFGNQCIVVSIDAKRVSKDGEDGRWEIFTHGGRQPTGIDAV EFAIKMVERGAGELLVTSMDRDGTKSGYDIGLTRSIADQVRVPVIASGGVGTLDDLVA GVRDGHATAVLAASIFHFGTYSIGQAKSYMAEHGIAMRLD" misc_feature complement(41668..42438) /gene="hisF" /locus_tag="AGROH133_02849" /note="Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]; Region: HisF; COG0107" /db_xref="CDD:30456" misc_feature complement(41689..42426) /gene="hisF" /locus_tag="AGROH133_02849" /note="The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-; Region: HisF; cd04731" /db_xref="CDD:73393" misc_feature complement(order(41746..41751,41815..41823,41893..41898, 41911..41913,41992..41994,42049..42051,42055..42057, 42127..42132,42193..42195,42289..42291,42382..42384)) /gene="hisF" /locus_tag="AGROH133_02849" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73393" misc_feature complement(order(41764..41766,41839..41841,41923..41925, 42070..42072,42142..42147,42154..42156,42211..42213, 42217..42219,42226..42228,42238..42240,42304..42306, 42319..42321)) /gene="hisF" /locus_tag="AGROH133_02849" /note="glutamase interaction surface [polypeptide binding]; other site" /db_xref="CDD:73393" gene complement(42438..43181) /gene="hisA" /locus_tag="AGROH133_02850" /db_xref="GeneID:10265798" CDS complement(42438..43181) /gene="hisA" /locus_tag="AGROH133_02850" /EC_number="5.3.1.16" /note="catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase" /codon_start=1 /transl_table=11 /product="1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase" /protein_id="YP_004277358.1" /db_xref="GI:325291494" /db_xref="GeneID:10265798" /translation="MILFPAIDLKDGQCVRLKLGDMEQATVYNTDPGAQAKSFEDQGF EWLHVVDLNGAFAGQTVNGEAVDAILKATTNPVQLGGGIRTLDHIEAWLSRGLARVIL GTVAVRDPVLVIEACKRFPGQVAVGIDAKGGKVAVEGWAEASELGVIELAKRFEGAGV AAIIYTDIDRDGILAGINWASTLELADAVSIPVIASGGLASIEDIKRMLQPDAAKLEG AISGRALYDGRIDPAEALALIKAAKEISA" misc_feature complement(42486..43181) /gene="hisA" /locus_tag="AGROH133_02850" /note="Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]; Region: HisA; COG0106" /db_xref="CDD:30455" misc_feature complement(42489..43178) /gene="hisA" /locus_tag="AGROH133_02850" /note="HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-...; Region: HisA; cd04732" /db_xref="CDD:73394" misc_feature complement(order(42795..42797,43038..43040,43158..43160)) /gene="hisA" /locus_tag="AGROH133_02850" /note="catalytic residues [active]" /db_xref="CDD:73394" gene complement(43183..43848) /gene="hisH" /locus_tag="AGROH133_02851" /db_xref="GeneID:10265799" CDS complement(43183..43848) /gene="hisH" /locus_tag="AGROH133_02851" /EC_number="2.4.2.-" /note="with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; Glutamine amidotransferase" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisH" /protein_id="YP_004277359.1" /db_xref="GI:325291495" /db_xref="GeneID:10265799" /translation="MEGADMRVAIIDYGSGNLRSATKAFERAAREAGINATIDLTDKP DHVASADRIVLPGVGAYADCRAGLEAVPGMHEALIEAVEKKAHPFLGICVGMQLMSSR GLEKTVSTGLGWIEGDVIEMTPSDPTLKIPQIGWNTLEIRHQHPLFDGIRTGADGLHA YFVHSYHLAAKHPADVIATTNYGGAMTAFVGRDNMAGAQFHPEKSQTLGLALISNFLR WKP" misc_feature complement(43186..43833) /gene="hisH" /locus_tag="AGROH133_02851" /note="imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13146" /db_xref="CDD:183871" misc_feature complement(43198..43827) /gene="hisH" /locus_tag="AGROH133_02851" /note="Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748" /db_xref="CDD:153219" misc_feature complement(order(43240..43242,43246..43248,43564..43578, 43672..43695)) /gene="hisH" /locus_tag="AGROH133_02851" /note="putative active site [active]" /db_xref="CDD:153219" misc_feature complement(43672..43695) /gene="hisH" /locus_tag="AGROH133_02851" /note="oxyanion strand; other site" /db_xref="CDD:153219" misc_feature complement(order(43240..43242,43246..43248,43570..43572)) /gene="hisH" /locus_tag="AGROH133_02851" /note="catalytic triad [active]" /db_xref="CDD:153219" gene complement(43835..44329) /locus_tag="AGROH133_02852" /db_xref="GeneID:10265800" CDS complement(43835..44329) /locus_tag="AGROH133_02852" /note="Protein of unknown function (DUF2506)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277360.1" /db_xref="GI:325291496" /db_xref="GeneID:10265800" /translation="MTSYLVLEAPNGPDRDHKTTRFIADRFVWLALIAPWLWLAVNRL WLAAIVVFAVLVLAGWASMLPGFEPVGILCSVAIALITALEGRDFLVRHLIGKGWKMT SVISAPDLSSAEEIYFSDLSENTVPSGQLSQPVWTPSPQKSGDKNFVNDPSGSFLFDL NGRR" gene complement(44353..44949) /gene="hisB" /locus_tag="AGROH133_02856" /db_xref="GeneID:10265801" CDS complement(44353..44949) /gene="hisB" /locus_tag="AGROH133_02856" /EC_number="4.2.1.19" /note="catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis" /codon_start=1 /transl_table=11 /product="Imidazoleglycerol-phosphate dehydratase" /protein_id="YP_004277361.1" /db_xref="GI:325291497" /db_xref="GeneID:10265801" /translation="MAERKGEIIRKTNETSVSVRVDIDGTGKSTISTGVGFFDHMLDQ LSRHSLIDMDIEVQGDLHIDDHHTVEDTGIAIGQAIAKALGDRRGITRYASLDLAMDE TMTKAAVDISGRPFLVWNVNFSAPKIGTFDTELVREFFQALAQNAGITLHILNHYGAN NHHIAETCFKAVARVLRAATEIDPRQAGRVPSTKGMLA" misc_feature complement(44359..44934) /gene="hisB" /locus_tag="AGROH133_02856" /note="Imidazoleglycerol-phosphate dehydratase; Region: IGPD; cd07914" /db_xref="CDD:153419" misc_feature complement(order(44452..44454,44461..44466,44536..44538, 44608..44610,44647..44652,44674..44676,44740..44742, 44749..44754,44806..44811,44818..44820,44830..44832, 44908..44910)) /gene="hisB" /locus_tag="AGROH133_02856" /note="putative active site pocket [active]" /db_xref="CDD:153419" misc_feature complement(order(44461..44475,44536..44541,44548..44550, 44554..44556,44563..44577,44749..44754,44758..44766, 44830..44832,44839..44844)) /gene="hisB" /locus_tag="AGROH133_02856" /note="4-fold oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153419" misc_feature complement(order(44452..44454,44461..44466,44536..44538, 44740..44742,44749..44754,44830..44832)) /gene="hisB" /locus_tag="AGROH133_02856" /note="metal binding residues [ion binding]; metal-binding site" /db_xref="CDD:153419" misc_feature complement(order(44401..44403,44419..44421,44428..44430, 44482..44484,44488..44490,44494..44496,44500..44502, 44602..44604,44608..44610,44620..44628,44638..44643, 44647..44655,44659..44667,44671..44673,44677..44679)) /gene="hisB" /locus_tag="AGROH133_02856" /note="3-fold/trimer interface [polypeptide binding]; other site" /db_xref="CDD:153419" gene 45153..45677 /gene="hslV" /locus_tag="AGROH133_02857" /db_xref="GeneID:10265802" CDS 45153..45677 /gene="hslV" /locus_tag="AGROH133_02857" /EC_number="3.4.25.-" /note="heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease HslVU (ClpYQ), peptidase subunit" /codon_start=1 /transl_table=11 /product="heat shock protein HslV" /protein_id="YP_004277362.1" /db_xref="GI:325291498" /db_xref="GeneID:10265802" /translation="MTTIITVRKGGKVVMAGDGQVSLGQTVMKGNARKVRRIGKGEVI AGFAGATADAFTLLDRLEKKLEQYPGQLMRAAVELAKDWRTDKYLRNLEAMMLVADKS TTLAITGNGDVLEPEHGAIAIGSGGNYAFAAARAMMDTDKSAEEVARKSLDIAADICV YTNHNLVIETLDAE" misc_feature 45156..45665 /gene="hslV" /locus_tag="AGROH133_02857" /note="Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the...; Region: protease_HslV; cd01913" /db_xref="CDD:48442" misc_feature order(45156..45158,45204..45206,45210..45212,45252..45254, 45525..45527) /gene="hslV" /locus_tag="AGROH133_02857" /note="active site" /db_xref="CDD:48442" misc_feature order(45225..45233,45402..45404,45483..45485,45495..45497, 45534..45539,45546..45548,45600..45602,45612..45614, 45621..45626,45630..45632) /gene="hslV" /locus_tag="AGROH133_02857" /note="HslU subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48442" gene 45765..47072 /gene="hslU" /locus_tag="AGROH133_02858" /db_xref="GeneID:10265803" CDS 45765..47072 /gene="hslU" /locus_tag="AGROH133_02858" /note="heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease HslVU (ClpYQ), ATPase subunit" /codon_start=1 /transl_table=11 /product="ATP-dependent protease ATP-binding subunit HslU" /protein_id="YP_004277363.1" /db_xref="GI:325291499" /db_xref="GeneID:10265803" /translation="MTTFSPREIVSELDRHIIGQHDAKRAVAIALRNRWRRQQLDESL RDEVMPKNILMIGPTGVGKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRD LVEIGIGLVREKKRAEVQAKAHQSAEERVLDALVGSTASPATRESFRKKLRDGELDDK EIDIEVADSGSGMPGFEIPGMPGANIGVLNLSEMFGKAMGGRTKKVRTTVSKSYTDLV RDESDKLLDNDMIQREAVKSVENDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPL VEGTTVSTKYGPVKTDHVLFIASGAFHVAKPSDLLPELQGRLPIRVELKPLTKEDFRR ILTETEASLIRQYKALMATEELDLDFTDDAIDALADVAVHLNSSVENIGARRLQTVME RVLDEISFNAPDRGGSAVKIDQEYVKKHVGDLAADTDLSRYIL" misc_feature 45765..47069 /gene="hslU" /locus_tag="AGROH133_02858" /note="ATP-dependent protease ATP-binding subunit HslU; Provisional; Region: hslU; PRK05201" /db_xref="CDD:179962" misc_feature 45816..>46073 /gene="hslU" /locus_tag="AGROH133_02858" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 45933..45956 /gene="hslU" /locus_tag="AGROH133_02858" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature 45936..45959 /gene="hslU" /locus_tag="AGROH133_02858" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature <46431..46727 /gene="hslU" /locus_tag="AGROH133_02858" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 47261..48226 /locus_tag="AGROH133_02859" /db_xref="GeneID:10265804" CDS 47261..48226 /locus_tag="AGROH133_02859" /note="Protein of unknown function DUF1402" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277364.1" /db_xref="GI:325291500" /db_xref="GeneID:10265804" /translation="MRKTLLAFAAALTFTVVSSSYAEAATVVPPGNRNAEQPGIPGAS ARRTKGSNTSFERKYQKVIDLLSSDKALIGKIKSTAGRYGIDPIHMIGAIVGEHTYNV DAYDRLQSYYVKAASYAGSSFRFGYKDETIAQFLTHSQFARCQSKKDSYSLWNCREDV WDDSFRGKTVDGVAYPNNRFSAVFFQPFYAGQTFGLGQINPLTALMLSDMVSKTSGYE KLDENDATAVYTAIMDPDRSLAFMAASIRKSIDDYRSIADMDVSKNPGVTSTLYNVGG SAQRAAALAQKNRQRAAGGEQPLLPEENYYGWLVNDRIKDLQALL" misc_feature 47309..48223 /locus_tag="AGROH133_02859" /note="Protein of unknown function (DUF1402); Region: DUF1402; pfam07182" /db_xref="CDD:148658" gene 48348..50516 /gene="glcB" /locus_tag="AGROH133_02861" /db_xref="GeneID:10265805" CDS 48348..50516 /gene="glcB" /locus_tag="AGROH133_02861" /EC_number="2.3.3.9" /note="catalyzes the formation of malate from glyoxylate and acetyl-CoA; Malate synthase" /codon_start=1 /transl_table=11 /product="malate synthase G" /protein_id="YP_004277365.1" /db_xref="GI:325291501" /db_xref="GeneID:10265805" /translation="MSRTNKFGLSIDDRLYAFLTDDVLPGTGFDAETFFEGFSAIVHE LSPKNRELLEKRDALQEKLDGWYRQNGAPTDFDVYEGFLKEIGYLLPEGPGFKVETSN VDSEIAAVAGPQLVVPVMNARYALNAANARWGSLYDALYGTDAISDADGAEKGRGYNP KRGEKVIAWARNFLNESAPLETAGWSDVTGFKIVDGLLQLAIGDSKTGLKDAEQFKGF TGDAEKPATILLGKNGLHTEIVIDPSTEIGKGDKAGISDVILESALTTIMDCEDSVAA VDAEDKVLVYGNWLGLMRGDLTEKVSKGGNTFTRSLNPDRYYTAPDGGALTLPGRSLM LVRNVGHLMTNPAILDKDGREVPEGIMDAVVTALIALYDVGPSGRRQNSRAGSMYVVK PKMHGPEEVAFANEIFTRAEKLVGMAPNTMKMGIMDEERRTTVNLKESIRAAKDRVVF INTGFLDRTGDEIHTSMEAGPMIRKGDMKQAAWIAAYENWNVDIGLECGLSGNAQIGK GMWAMPDLMAAMLEQKIAHPKAGANTAWVPSPTAATLHATHYHKVDVAAVQDDLKSRG RAKLSDILSVPVVPRPNWTPEEIQRELDNNAQGILGYVVRWVDQGVGCSKVPDINNVG LMEDRATLRISAQHMANWLRHGVVTQEQIVETMKRMAAVVDSQNAGDPAYLPMASNFE GSVAFQAAVELVLKGREQPNGYTEPVLHRRRLELKAKQAA" misc_feature 48369..50498 /gene="glcB" /locus_tag="AGROH133_02861" /note="Malate synthase G (MSG), monomeric enzyme present in some bacteria. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate...; Region: malate_synt_G; cd00728" /db_xref="CDD:48434" misc_feature order(49356..49358,49632..49634,49710..49712,49716..49718, 50229..50231) /gene="glcB" /locus_tag="AGROH133_02861" /note="active site" /db_xref="CDD:48434" gene complement(50669..51442) /locus_tag="AGROH133_02862" /db_xref="GeneID:10265806" CDS complement(50669..51442) /locus_tag="AGROH133_02862" /note="ErfK/YbiS/YcfS/YnhG; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277366.1" /db_xref="GI:325291502" /db_xref="GeneID:10265806" /translation="MENNRFIQLSLLLRTIWRIFRENDMRIRTSLTALGLTAALALAG CAETTSQSSGQVAASVPVANPVPAKVETVQIFNDVYGPVTDAGYALPAIPINRVNEKF RRQIVEFQNNERPGTIIVNTRERFLYYILPGNRAVRYGIGVGKAGFAWAGEAYVAWKQ EWPMWHPPKEMADRKPEVAKYVEAGMGPGLSNPLGARAMYLFNEKGQDTLFRIHGSPE WASIGTAASSGCIRMINQDVIDLYSRVRPGRSTKVVVIQ" misc_feature complement(50672..51214) /locus_tag="AGROH133_02862" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: ErfK; COG1376" /db_xref="CDD:31566" misc_feature complement(50678..>50827) /locus_tag="AGROH133_02862" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene 51554..52039 /locus_tag="AGROH133_02864" /db_xref="GeneID:10265807" CDS 51554..52039 /locus_tag="AGROH133_02864" /note="Protein of unknown function DUF1052; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277367.1" /db_xref="GI:325291503" /db_xref="GeneID:10265807" /translation="MTILSLTNNNPLIDGRQSDKAMLVRRGVQVLLHEMRHSVLPELP LASGRRADLISLSAKGEIWIIEIKSSIEDFRVDRKWPEYRLHCDRLFFATHPEVPVEI FPEECGLILSDGYGAHMLRDAPEHKLPPATRKSVMLDFSRTAATRLMLAEWTTGRSFG E" misc_feature 51554..52027 /locus_tag="AGROH133_02864" /note="Protein of unknown function (DUF1052); Region: DUF1052; cl02197" /db_xref="CDD:121163" gene complement(52099..52683) /gene="actR" /locus_tag="AGROH133_02865" /db_xref="GeneID:10265808" CDS complement(52099..52683) /gene="actR" /locus_tag="AGROH133_02865" /note="CheY-like, Response regulator receiver domain; Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004277368.1" /db_xref="GI:325291504" /db_xref="GeneID:10265808" /translation="MTTEDQTPISATTDDDDPIGADRSLLIVDDDGPFLRRLARAMET RGFIVDTAETVSEGIARSKAAPPKYAVVDLRLTDGNGLEVIEAIRQYRDDTQIVVLTG YGNIATAVTAVKLGALDYLAKPADADDVFNALTQRKGEKTEVPENPMSADRVRWEHIQ RVYEMCERNVSETARRLNMHRRTLQRILAKRAPK" misc_feature complement(52102..52641) /gene="actR" /locus_tag="AGROH133_02865" /note="Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]; Region: COG4567" /db_xref="CDD:34205" misc_feature complement(52276..52608) /gene="actR" /locus_tag="AGROH133_02865" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(52312..52317,52324..52326,52381..52383, 52441..52443,52465..52467,52594..52599)) /gene="actR" /locus_tag="AGROH133_02865" /note="active site" /db_xref="CDD:29071" misc_feature complement(52465..52467) /gene="actR" /locus_tag="AGROH133_02865" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(52441..52449,52453..52458)) /gene="actR" /locus_tag="AGROH133_02865" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(52309..52317) /gene="actR" /locus_tag="AGROH133_02865" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(52751..54082) /gene="actS" /locus_tag="AGROH133_02867" /db_xref="GeneID:10265809" CDS complement(52751..54082) /gene="actS" /locus_tag="AGROH133_02867" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004277369.1" /db_xref="GI:325291505" /db_xref="GeneID:10265809" /translation="MKSTKEMKVAGHPIETTRLGRASRRIRLQTIVWLRWLAVAGQSA TILLVAFGLNFPLPLLACSLLIGALALANLFLTARFPSTYRLEPWEATLLLAFDLLQL TALIYITGGLSNPFAPLICVQVIIAFASQPLRHSLILLAFAVICSTAIAFSPFPVPWY PGEVLPIQLLLHVGTWVAIIATTSFAAFYAYRVSHEANQLADALAATELVLEREKHLS QLDGLAAAAAHELGTPLATISVVAKEMERELGNDERFGEDIALLRSQSERCRDILRRL TSLSTDDEEHMRRLPLSSLIEEVMAPHREFGIRLDLVEKNNRIDEPVGIRNAGVIYGL GNLIENGVDYAREKVTVTVDYDSQNVAVTIEDDGPGYAHDVLARIGEPYVTERHNDTR AGGLGLGLFIAKTLLERSGATVTFENRGLSGTGARVTIIWPRALMDDKRDR" misc_feature complement(52769..53761) /gene="actS" /locus_tag="AGROH133_02867" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature complement(53243..53434) /gene="actS" /locus_tag="AGROH133_02867" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(53255..53257,53267..53269,53276..53278, 53288..53290,53297..53299,53309..53311,53360..53362, 53369..53371,53381..53383,53390..53392,53402..53404, 53414..53416)) /gene="actS" /locus_tag="AGROH133_02867" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(53396..53398) /gene="actS" /locus_tag="AGROH133_02867" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(52793..53083) /gene="actS" /locus_tag="AGROH133_02867" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(52805..52807,52811..52816,52829..52831, 52835..52837,52883..52894,52970..52975,52979..52981, 52985..52987,52991..52993,53054..53056,53063..53065, 53075..53077)) /gene="actS" /locus_tag="AGROH133_02867" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(53063..53065) /gene="actS" /locus_tag="AGROH133_02867" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(52886..52888,52892..52894,52973..52975, 52979..52981)) /gene="actS" /locus_tag="AGROH133_02867" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(54088..56574) /gene="hrpB" /locus_tag="AGROH133_02872" /db_xref="GeneID:10265810" CDS complement(54088..56574) /gene="hrpB" /locus_tag="AGROH133_02872" /EC_number="3.6.1.-" /note="RNA helicase, ATP-dependent DEAH box, HrpB type, ATP-dependent helicase C-terminal; HrpA-like helicases" /codon_start=1 /transl_table=11 /product="helicase" /protein_id="YP_004277370.1" /db_xref="GI:325291506" /db_xref="GeneID:10265810" /translation="MTRTPAHIKIDLPVLPVSDVLAEIAQALDGSKRAVLSAPPGAGK TTLVPLHLLREEWRGDGKIILLEPRRLAARAAAGRMADLLQENVGETVGYRMRLDNRI SSRTRIEVVTEGVFARMVLDDPELAGVSTVIFDEFHERSLDGDFGLALALDVQEGLRD DLRILVMSATLDVERISALMGDAPVIQSLGRTYPIDIRYEDRWQGVAVEEKVTKAITE AHASETGSILAFLPGQAEITRTANRLEGRFSDDTDIIPLYGNLSQKEQDAAIKPAPAG RRKIVLATSIAETSITIDGVRVVIDSGLQRLPVFEPATGITRLETVRVSRASADQRAG RAGRTEPGVAIRLWHPGQTAALNAFTPPQILASDLSGLALDLAHWGVHDPSALSFLDA PPEAALKESIALLKNLGALDESGALTRRGHLMRSLSLPPRLAAMVIAAGSEGAGKKAA MLAVMLTEQGLGGTDIDLDERLRRFLSERSERAQAARKLASRLLDAIGDAQTMNEQPS EAGPLLLHAYPDRIALQRGARGRYVMANGRGAELAETERLAASRMLVVADITGRAAQP RILSAASIERTDIEERMPHLIVQQDQLLFDKASGQARARRVTRLGAIILDETPLPRPE GEQAAQALANGVREFGVGILPFTKETQQLRDRIGFLNASIGDPWPDVSDAALLLRLDE WFVPFQHGARSLQDIRPGSLSEGLLALVPYEVARDLGRLAPTHFEAPTGQRHPIRYDA SEPTLSIRVQELFGLTAHPAIAQGRLPLLLELTSPAHRPIQTTRDLPGFWAGSWKDVR ADMRGRYPRHPWPEDPASALPTSRAKPRGT" misc_feature complement(54103..56532) /gene="hrpB" /locus_tag="AGROH133_02872" /note="ATP-dependent RNA helicase HrpB; Provisional; Region: PRK11664" /db_xref="CDD:183267" misc_feature complement(56062..56481) /gene="hrpB" /locus_tag="AGROH133_02872" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature complement(56440..56454) /gene="hrpB" /locus_tag="AGROH133_02872" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature complement(56161..56172) /gene="hrpB" /locus_tag="AGROH133_02872" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature complement(55534..55989) /gene="hrpB" /locus_tag="AGROH133_02872" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature complement(order(55717..55725,55798..55803,55870..55881)) /gene="hrpB" /locus_tag="AGROH133_02872" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(order(55561..55563,55570..55572,55582..55584, 55699..55701)) /gene="hrpB" /locus_tag="AGROH133_02872" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(<55198..55377) /gene="hrpB" /locus_tag="AGROH133_02872" /note="Helicase associated domain (HA2); Region: HA2; cl04503" /db_xref="CDD:194889" misc_feature complement(54133..54528) /gene="hrpB" /locus_tag="AGROH133_02872" /note="ATP-dependent helicase C-terminal; Region: HrpB_C; pfam08482" /db_xref="CDD:149509" gene 57248..58727 /locus_tag="AGROH133_02873" /db_xref="GeneID:10265811" rRNA 57248..58727 /locus_tag="AGROH133_02873" /product="16S ribosomal RNA" /db_xref="GeneID:10265811" gene 59071..59147 /locus_tag="AGROH133_02874" /db_xref="GeneID:10265812" tRNA 59071..59147 /locus_tag="AGROH133_02874" /product="tRNA-Ile" /anticodon=(pos:59105..59107,aa:Ile) /db_xref="GeneID:10265812" gene 59207..59282 /locus_tag="AGROH133_02875" /db_xref="GeneID:10265813" tRNA 59207..59282 /locus_tag="AGROH133_02875" /product="tRNA-Ala" /anticodon=(pos:59240..59242,aa:Ala) /db_xref="GeneID:10265813" gene 59300..59458 /locus_tag="AGROH133_02876" /db_xref="GeneID:10265758" CDS 59300..59458 /locus_tag="AGROH133_02876" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277371.1" /db_xref="GI:325291507" /db_xref="GeneID:10265758" /translation="MSFVLTLLRSSIASLRTARATRRDGLSACVGGLIGKLNILLKKK NVCIVRKD" gene 59868..62683 /locus_tag="AGROH133_02877" /db_xref="GeneID:10265814" rRNA 59868..62683 /locus_tag="AGROH133_02877" /product="23S ribosomal RNA" /db_xref="GeneID:10265814" gene 62921..63040 /locus_tag="AGROH133_02878" /db_xref="GeneID:10265815" rRNA 62921..63040 /locus_tag="AGROH133_02878" /product="5S RNA" /db_xref="GeneID:10265815" gene 63296..63372 /locus_tag="AGROH133_02879" /db_xref="GeneID:10265816" tRNA 63296..63372 /locus_tag="AGROH133_02879" /product="tRNA-Met" /anticodon=(pos:63330..63332,aa:Met) /db_xref="GeneID:10265816" gene 63584..65377 /gene="recQ" /locus_tag="AGROH133_02880" /db_xref="GeneID:10265817" CDS 63584..65377 /gene="recQ" /locus_tag="AGROH133_02880" /EC_number="3.6.1.-" /note="DNA helicase, ATP-dependent, RecQ type; Superfamily II DNA helicase" /codon_start=1 /transl_table=11 /product="DNA helicase" /protein_id="YP_004277372.1" /db_xref="GI:325291508" /db_xref="GeneID:10265817" /translation="MQILKTVYGYDTFRGQQAEIIRHVMAGNNAFVLMPTGGGKSLCY QIPALARQGMGLVVSPLIALMVDQVAALRQAGVRAEALNSDLSPEERRVLWQDVRAGK VDILYAAPETLLKPDVLDALQPISLSLIAIDEAHCLSQWGHDFRPPYRQLDTLIERFP DTPRMALTATADEPTRAEILGHLGINGSDAFIAGFDRPNIRYAIMEKDNPRTQLKRFL TGREDESGIVYCLSKRKVDETAAWLREEGRDALPYHAGMDKAAREANQTHFQHGEAVI MVATVAFGMGIDKPDVRFVVHIDLPSSIEAYYQETGRAGRDGLPSDVLMLYGYEDIAL RNRFIEESDAGDQRKNMERRKLDALLGLAETAGCRRRVLLSYFGDYCEPCGNCDTCAE PPDLFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGMEDERISSFGHDRITTYGIGKE HDNRTWRAILRQMVALRLIEVDLAGHGGLSISEEGRRFLREKPSLMLRIPTAPRSARQ QTNRKPTAIVLPDADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLIELAAARPASVG EMAQIPGVGDTKLERYGPAFLAAIMEHAASE" misc_feature 63587..65362 /gene="recQ" /locus_tag="AGROH133_02880" /note="ATP-dependent DNA helicase RecQ; Region: recQ; TIGR01389" /db_xref="CDD:130456" misc_feature 63665..64093 /gene="recQ" /locus_tag="AGROH133_02880" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 63692..63706 /gene="recQ" /locus_tag="AGROH133_02880" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 63980..63991 /gene="recQ" /locus_tag="AGROH133_02880" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature 64178..64561 /gene="recQ" /locus_tag="AGROH133_02880" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(64274..64285,64343..64348,64421..64429) /gene="recQ" /locus_tag="AGROH133_02880" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(64445..64447,64508..64510,64520..64522,64529..64531) /gene="recQ" /locus_tag="AGROH133_02880" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 64775..65050 /gene="recQ" /locus_tag="AGROH133_02880" /note="RQC domain; Region: RQC; pfam09382" /db_xref="CDD:192276" misc_feature 65150..65353 /gene="recQ" /locus_tag="AGROH133_02880" /note="HRDC domain; Region: HRDC; cl02578" /db_xref="CDD:154997" gene complement(65432..66664) /gene="frcR" /locus_tag="AGROH133_02881" /db_xref="GeneID:10265818" CDS complement(65432..66664) /gene="frcR" /locus_tag="AGROH133_02881" /note="ROK family transcriptional regulator; Transcriptional regulator/sugar kinase" /codon_start=1 /transl_table=11 /product="ROK family transcriptional regulator" /protein_id="YP_004277373.1" /db_xref="GI:325291509" /db_xref="GeneID:10265818" /translation="MRQSVETAPPAPSTNMDMSGGANQIGVRAYNERLVLSLVRRHGG LSKAEISRLCGLSAQTVSVIMRSLESDGLLIRGERLRGKVGQPSTPMRLNPDAVFSFG VKIGRRSVDLVLMDFVGRIKLKLRRTYPYPMPEWILPFVIEGITELESKLSPAERQKI AGVGIAAPFELWNWAQEVGAPQNEMERWRDVDIRAEIADGVSYPVFLQNDATSACGAE LVFGAGQNYPDFLYIFIGSFIGGGVVLNSALFSGKTGTAGAIGPLPVQGQDGNTVQLL KIASIFVLENMLRERGIDPRPLWFSPDEWIDFGEPLESWIGKTAAALAQAVIAAASII DFSSVIIDGGFPDWVRARIVSATRLALKHHDLQGVTLPEIIEGAVGSQARAIGGASLP LFSRYLIDQNVLFKDTTG" misc_feature complement(66437..66571) /gene="frcR" /locus_tag="AGROH133_02881" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(65459..66388) /gene="frcR" /locus_tag="AGROH133_02881" /note="Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940" /db_xref="CDD:32123" misc_feature complement(65882..66361) /gene="frcR" /locus_tag="AGROH133_02881" /note="FGGY family of carbohydrate kinases, N-terminal domain; Region: FGGY_N; cl09121" /db_xref="CDD:195797" gene 66931..67953 /gene="frcB" /locus_tag="AGROH133_02883" /db_xref="GeneID:10265819" CDS 66931..67953 /gene="frcB" /locus_tag="AGROH133_02883" /note="ABC transporter substrate-binding protein (sugar); ABC-type sugar transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="sugar ABC transporter substrate-binding protein" /protein_id="YP_004277374.1" /db_xref="GI:325291510" /db_xref="GeneID:10265819" /translation="MKTTVSALLGALALGVSFASVASAADTSVCLITKTDTNPFFVKM KEGATAKAKELGVTLKSYAGKIDGDSESQVAAIETCIADGSKGILITASDTKGIVPAV QKARDAGLLVIALDTPLEPVDAADSTFATDNLLAGELIGKWAAGTLGDKAKDAKIAFL NLTPSQPTVDVLRNQGFMKGFGIDVKDINKIGDEDDKRIVGHDVTNGNEEGGRSAMEN LLQKDPTINVVHTINEPAAAGAYEALKAVGREKDVLIVSVDGGCPGVKNVAEGVIGAT SQQYPLLMAALGVEAVKKFADTGEKPKPTAGKNFFDTGVTLVTDKPVKGLDSIDTKEG LKKCWG" misc_feature 67015..67881 /gene="frcB" /locus_tag="AGROH133_02883" /note="Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_ABC_sugar_binding_like; cd01536" /db_xref="CDD:107249" misc_feature order(67048..67050,67276..67278,67447..67449,67705..67707, 67765..67767) /gene="frcB" /locus_tag="AGROH133_02883" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107249" gene 68177..69259 /gene="frcC" /locus_tag="AGROH133_02885" /db_xref="GeneID:10265820" CDS 68177..69259 /gene="frcC" /locus_tag="AGROH133_02885" /note="Branched-chain amino acid transport system / permease component; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components" /codon_start=1 /transl_table=11 /product="sugar ABC transporter transmembrane protein" /protein_id="YP_004277375.1" /db_xref="GI:325291511" /db_xref="GeneID:10265820" /translation="MSDQPVRAQPHNEFEKVLSGSSTQVAAFDTHNKSLLEKFQHFLH SSPAAVPLIVLVLSLAVFGMTLGGKFFSAFSLTLILQQVAIVGIVGAAQSLVILTAGI DLSVGAIMVLSSVVMGQFTFRYGLPAELSIICGLAVGAFCGFINGVLVSRMRLPPFIV TLGMWQIVLATNFLYSANETIRSQDIVQQAPILQFFGNNVRIGSAVFTYGVIAMVLLV ALLWYVLNRTAWGRHLYAVGDDPDAAELAGVNVKRMLTTVYTLSGLICAFAGWALIGR IGSVSPTAGQFANIESITAVVIGGISLFGGRGSIMGMIFGALIVGVFSLGLRLIGTDP QWTYLLIGVLIILAVAIDQWIRKVAG" misc_feature 68423..69190 /gene="frcC" /locus_tag="AGROH133_02885" /note="Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579" /db_xref="CDD:119321" misc_feature 68900..68956 /gene="frcC" /locus_tag="AGROH133_02885" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119321" gene 69259..70041 /gene="frcA" /locus_tag="AGROH133_02895" /db_xref="GeneID:10265821" CDS 69259..70041 /gene="frcA" /locus_tag="AGROH133_02895" /note="ABC transporter nucleotide-binding protein/ATPase (sugar); ABC-type sugar transport system, ATPase component" /codon_start=1 /transl_table=11 /product="sugar ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277376.1" /db_xref="GI:325291512" /db_xref="GeneID:10265821" /translation="MAKEPILTARNLVKRYGRVTALDNADFDLYPGEILAVIGDNGAG KSSLIKAISGAVTPDEGEIRLEGKPVQFRSPIEARKAGIETVYQNLALSPALSIADNM FLGREIRKPGIQGSLFRALDRPAMEKFAREKLSELGLMTIQNINQAVETLSGGQRQGV AVARAAAFGSKVVILDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVA DRIHIHRLGKRLCVINPKDYTMSDAVAFMTGAKEAPKETLAA" misc_feature 69268..69948 /gene="frcA" /locus_tag="AGROH133_02895" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411" /db_xref="CDD:30760" misc_feature 69277..69942 /gene="frcA" /locus_tag="AGROH133_02895" /note="This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and...; Region: ABC_Carb_Monos_I; cd03216" /db_xref="CDD:72975" misc_feature 69373..69396 /gene="frcA" /locus_tag="AGROH133_02895" /note="Walker A/P-loop; other site" /db_xref="CDD:72975" misc_feature order(69382..69387,69391..69399,69520..69522,69784..69789, 69883..69885) /gene="frcA" /locus_tag="AGROH133_02895" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72975" misc_feature 69511..69522 /gene="frcA" /locus_tag="AGROH133_02895" /note="Q-loop/lid; other site" /db_xref="CDD:72975" misc_feature order(69544..69570,69577..69579) /gene="frcA" /locus_tag="AGROH133_02895" /note="ABC transporter signature motif; other site" /db_xref="CDD:72975" misc_feature 69772..69789 /gene="frcA" /locus_tag="AGROH133_02895" /note="Walker B; other site" /db_xref="CDD:72975" misc_feature 69796..69807 /gene="frcA" /locus_tag="AGROH133_02895" /note="D-loop; other site" /db_xref="CDD:72975" misc_feature 69871..69891 /gene="frcA" /locus_tag="AGROH133_02895" /note="H-loop/switch region; other site" /db_xref="CDD:72975" gene 70038..70667 /gene="frcK" /locus_tag="AGROH133_02896" /db_xref="GeneID:10265822" CDS 70038..70667 /gene="frcK" /locus_tag="AGROH133_02896" /EC_number="2.7.1.33" /note="fructose transport system kinase" /codon_start=1 /transl_table=11 /product="Pantothenate kinase" /protein_id="YP_004277377.1" /db_xref="GI:325291513" /db_xref="GeneID:10265822" /translation="MTLKLETIVEDVLRRAEGKSRFIIAIAGPPGAGKSTLADALCGA LLARGEAAAVLPMDGFHMDNGILEERGLLPRKGAPETFDVRGFLDIVSAVRQGGQEVL VPVFDRSREIAIASARAIAPETRFILAEGNYLLLNEAPWTKLSGSFDLAVFVGPSVAV LEERLRDRWQGYGLDATEIHAKLFENDLPNGKRVIENSRPADIRIDIWE" misc_feature 70104..>70541 /gene="frcK" /locus_tag="AGROH133_02896" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature order(70119..70121,70134..70145) /gene="frcK" /locus_tag="AGROH133_02896" /note="Active site [active]" /db_xref="CDD:73295" gene 71279..71500 /gene="nrdH" /locus_tag="AGROH133_02897" /db_xref="GeneID:10265823" CDS 71279..71500 /gene="nrdH" /locus_tag="AGROH133_02897" /note="GlrX_NrdH: Glutaredoxin-like protein NrdH" /codon_start=1 /transl_table=11 /product="glutaredoxin protein" /protein_id="YP_004277378.1" /db_xref="GI:325291514" /db_xref="GeneID:10265823" /translation="MTVTVYSKPACVQCTATYRALDRIGVSYEIVDISEDADALDRVR GLGYMQVPVVVAGERHWAGFRPDMIGSIS" misc_feature 71282..71485 /gene="nrdH" /locus_tag="AGROH133_02897" /note="NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide...; Region: NrdH; cd02976" /db_xref="CDD:48525" misc_feature order(71309..71311,71318..71320) /gene="nrdH" /locus_tag="AGROH133_02897" /note="catalytic residues [active]" /db_xref="CDD:48525" gene 71585..71911 /gene="nrdI" /locus_tag="AGROH133_02898" /db_xref="GeneID:10265824" CDS 71585..71911 /gene="nrdI" /locus_tag="AGROH133_02898" /note="in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF" /codon_start=1 /transl_table=11 /product="ribonucleotide reductase stimulatory protein" /protein_id="YP_004277379.1" /db_xref="GI:325291515" /db_xref="GeneID:10265824" /translation="MLRLPLGAEEDVPHVSEPYVLVTPTYGGGGMKGAVPKPVIRFLN EPSNRNLIRGVIAAGNTNFGAAFASAGDIVSRKCAVPFLYRFELLGTEEDVANVNHGL ERFWTR" misc_feature 71588..71908 /gene="nrdI" /locus_tag="AGROH133_02898" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 71899..74088 /gene="nrdE" /locus_tag="AGROH133_02899" /db_xref="GeneID:10265825" CDS 71899..74088 /gene="nrdE" /locus_tag="AGROH133_02899" /EC_number="1.17.4.1" /note="Catalyzes the rate-limiting step in dNTP synthesis; Ribonucleotide reductase, subunit alpha" /codon_start=1 /transl_table=11 /product="ribonucleotide-diphosphate reductase subunit alpha" /protein_id="YP_004277380.1" /db_xref="GI:325291516" /db_xref="GeneID:10265825" /translation="MDTLTSSALRNTDAKQQVTAAQKHLDAGLDYHALNAMLNLYDEN GKIQLDKDRLAARQYFLQHVNQNTVFFHNLREKLDYLVTEGYYEQEVLDQYSFNFVRD LYDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALARGDEQLA RDLMDEIISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSALQLSKR GGGVALSLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHA HHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYG VPFTEISVSEKYQEMVADSRIRKKKIKAREFFQVIAEIQFESGYPYIMFEDTVNRANP IAGRISMSNLCSEILQVSEASEFNDDLSYSHMGKDISCNLGSLNIASAMDSADFGKTI ETSIRALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEEGIDF TNIYFYTVTYHAIRASNRLATERGQSFKGFENSKYASGDYFDKYTDREWLPATEKVRD LFEKAGISIPTQEDWKALKQAVMETGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKI EIRKEGKIGRVYYPASYLSNDNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFF RDTATTRDINRAQIYAWKKGIKTIYYIRLRQMALEGTQVQGCVSCTL" misc_feature 71953..74085 /gene="nrdE" /locus_tag="AGROH133_02899" /note="ribonucleotide-diphosphate reductase subunit alpha; Validated; Region: PRK08188" /db_xref="CDD:181278" misc_feature 71989..72234 /gene="nrdE" /locus_tag="AGROH133_02899" /note="Ribonucleotide reductase N-terminal; Region: RNR_N; pfam08343" /db_xref="CDD:192008" misc_feature 72319..74028 /gene="nrdE" /locus_tag="AGROH133_02899" /note="Class I ribonucleotide reductase; Region: RNR_I; cd01679" /db_xref="CDD:153088" misc_feature order(72424..72429,72472..72477,72559..72561,73099..73101, 73105..73107,73111..73113,73192..73194,73663..73665, 73705..73719) /gene="nrdE" /locus_tag="AGROH133_02899" /note="active site" /db_xref="CDD:153088" misc_feature order(72463..72465,72502..72507,72514..72516,72523..72528, 72535..72540,72547..72549,72592..72594,72628..72630, 72640..72645,72649..72654,72661..72666,72673..72687) /gene="nrdE" /locus_tag="AGROH133_02899" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153088" misc_feature order(72475..72477,73099..73101,73105..73107,73111..73113, 73186..73188,74017..74022) /gene="nrdE" /locus_tag="AGROH133_02899" /note="catalytic residues [active]" /db_xref="CDD:153088" misc_feature order(72496..72504,72511..72513,72547..72549,72586..72588, 72628..72630,72643..72645) /gene="nrdE" /locus_tag="AGROH133_02899" /note="effector binding site; other site" /db_xref="CDD:153088" misc_feature order(72823..72825,72832..72837,72841..72846,72985..72987, 72997..72999,73018..73020,73957..73965,73969..73974, 73984..73989,73993..73998) /gene="nrdE" /locus_tag="AGROH133_02899" /note="R2 peptide binding site; other site" /db_xref="CDD:153088" gene 74105..75079 /gene="nrdF" /locus_tag="AGROH133_02901" /db_xref="GeneID:10265826" CDS 74105..75079 /gene="nrdF" /locus_tag="AGROH133_02901" /EC_number="1.17.4.1" /note="B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; Ribonucleotide reductase, beta subunit" /codon_start=1 /transl_table=11 /product="ribonucleotide-diphosphate reductase subunit beta" /protein_id="YP_004277381.1" /db_xref="GI:325291517" /db_xref="GeneID:10265826" /translation="MNIAVKPASRIRAVNWNRIEDDKDLEVWNRLTSNFWLPEKVPLS NDIPSWGTLKPEEQTLTIRVFTGLTLLDTIQNGVGSVRLMADSATPHEEAVLSNISFM EAVHARSYSSIFSTLCSTPDVDDAYRWSEENEFLQRKSALIMREYDSGNPLKMKVASV FLESFLFYSGFYLPMFWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALERLGEA EKQEIKDFAFDLLLELYDNEAKYTQDLYDGVGLTEDVKQFLHYNANKALMNLGYEALF PPEACRVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWDF" misc_feature 74105..75076 /gene="nrdF" /locus_tag="AGROH133_02901" /note="ribonucleotide-diphosphate reductase subunit beta; Provisional; Region: nrdF2; PRK13966" /db_xref="CDD:140022" misc_feature 74144..74959 /gene="nrdF" /locus_tag="AGROH133_02901" /note="Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049" /db_xref="CDD:153108" misc_feature order(74144..74146,74177..74179,74198..74200,74393..74398, 74405..74407,74414..74419,74426..74428,74435..74437, 74483..74488,74495..74497) /gene="nrdF" /locus_tag="AGROH133_02901" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153108" misc_feature order(74210..74212,74318..74320,74411..74413,74420..74422, 74432..74434,74687..74692,74702..74704) /gene="nrdF" /locus_tag="AGROH133_02901" /note="putative radical transfer pathway; other site" /db_xref="CDD:153108" misc_feature order(74318..74320,74411..74413,74420..74422,74591..74593, 74693..74695,74702..74704) /gene="nrdF" /locus_tag="AGROH133_02901" /note="diiron center [ion binding]; other site" /db_xref="CDD:153108" misc_feature 74432..74434 /gene="nrdF" /locus_tag="AGROH133_02901" /note="tyrosyl radical; other site" /db_xref="CDD:153108" gene complement(75108..76310) /locus_tag="AGROH133_02902" /db_xref="GeneID:10265827" CDS complement(75108..76310) /locus_tag="AGROH133_02902" /note="Uncharacterised conserved protein UCP033909, Alpha/beta hydrolase of unknown function (DUF900); Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277382.1" /db_xref="GI:325291518" /db_xref="GeneID:10265827" /translation="MPPHRNPVSSSNFLSGRLLMRGPSLSVTPSMRLIFSLLLAFSLL SSCAGRPGADVLQAINTKTTDTKIVTAYVASTREKNNEAKKGFSAGRAAELNYARFDI SIPPSHKSGNIEWSKGKPNPSKDFVVTKADMLTKTRFNSDLGDVTRSGKQNALFVHGY NYSYQEALFRAAQMAADANMDGVPLVFSWPSQASVTGYVADKESATYSRDALATVLTD LTRQTPKKSIVVFGHSMGGWLVMEALRQLRFEGRNDVLSKLQVVLAAPDIDADVFRKQ IEVVGRLNPPLTILVSKDDRALKASSILGADVTRIGALDVTDPQVQEAALKEGVQFVD ISKLKASDPLNHDRYAALASLVPQLEASRNGNGENGIGRAGAFVFDAIGATVSSPFRL ASQVVNPQ" misc_feature complement(75111..76172) /locus_tag="AGROH133_02902" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4782" /db_xref="CDD:34393" misc_feature complement(75222..75905) /locus_tag="AGROH133_02902" /note="Alpha/beta hydrolase of unknown function (DUF900); Region: DUF900; pfam05990" /db_xref="CDD:147899" gene 76377..77504 /gene="recF" /locus_tag="AGROH133_02904" /db_xref="GeneID:10265828" CDS 76377..77504 /gene="recF" /locus_tag="AGROH133_02904" /note="Required for DNA replication; binds preferentially to single-stranded, linear DNA; Recombinational DNA repair ATPase (RecF pathway)" /codon_start=1 /transl_table=11 /product="recombination protein F" /protein_id="YP_004277383.1" /db_xref="GI:325291519" /db_xref="GeneID:10265828" /translation="MTNKVSLLRLKLTDFRNYAAASLALDDRHVVLTGDNGSGKTNLL EAVSFLSPGRGLRRATLSDVTRVGAEAAGFSIFADVDGMDGEVAIGTGIEGDGEVVSR RLRLNGTSVKSVDELTDHLRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPAHGRRA SDFEKAMRGRNRLLSEGRFDPVWLDGIEKQMAELGISMALARYEMLGLLKSLIEGRSG NAAFPSAALALSGFMDDTLNRPAVDLEDEYRLTLREGRYRDAAAGRTLDGPHRVDLFV RHAEKNMEAERCSTGEQKALLVGLVLAHAQLTANMTGHAPVLLLDEIAAHLDEGRRAA LFDLIHALGGQSFMTGTDAAMFSALGDRAQFFNVSHGGITA" misc_feature 76389..77501 /gene="recF" /locus_tag="AGROH133_02904" /note="recombination protein F; Reviewed; Region: recF; PRK00064" /db_xref="CDD:178835" misc_feature 76395..>76901 /gene="recF" /locus_tag="AGROH133_02904" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 76476..76499 /gene="recF" /locus_tag="AGROH133_02904" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(76485..76490,76494..76502,76758..76760) /gene="recF" /locus_tag="AGROH133_02904" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 76749..76760 /gene="recF" /locus_tag="AGROH133_02904" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature <77166..77498 /gene="recF" /locus_tag="AGROH133_02904" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 77238..77267 /gene="recF" /locus_tag="AGROH133_02904" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 77325..77342 /gene="recF" /locus_tag="AGROH133_02904" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 77349..77360 /gene="recF" /locus_tag="AGROH133_02904" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 77418..77438 /gene="recF" /locus_tag="AGROH133_02904" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene 77527..78294 /gene="moeB" /locus_tag="AGROH133_02905" /db_xref="GeneID:10265829" CDS 77527..78294 /gene="moeB" /locus_tag="AGROH133_02905" /note="ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein MoeB" /protein_id="YP_004277384.1" /db_xref="GI:325291520" /db_xref="GeneID:10265829" /translation="MDPLSPDEIERYKRHILLPEIGGSGQQRLKAARVLVIGAGGLGA PVLHYLAAAGVGTLGLIDDDVVSLSNLQRQVIHDTGTIGELKTASARAAIARLNPHVR TLVFEERFSQVWAHTHLPSFDLLIDGSDNFDTRYAAADAAEAAKRPLVTGAVGRFDGS VTVLKPYEAGADGNLLPGYRDLFPEPPPQGLIPNCAETGIVGALTGVIGTIMAMEAIK VITAAGEPLVGRLLLYDALSARFETVRYKRRPAGKKT" misc_feature 77527..78279 /gene="moeB" /locus_tag="AGROH133_02905" /note="molybdopterin biosynthesis protein MoeB; Provisional; Region: PRK05690" /db_xref="CDD:180204" misc_feature 77557..78261 /gene="moeB" /locus_tag="AGROH133_02905" /note="ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of...; Region: ThiF_MoeB_HesA_family; cd00757" /db_xref="CDD:30111" misc_feature order(77638..77640,77644..77646,77650..77652,77710..77712, 77716..77718,77743..77745,77782..77784,77908..77910, 77926..77928) /gene="moeB" /locus_tag="AGROH133_02905" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:30111" misc_feature order(77650..77652,77911..77919,77929..77931,77983..77988, 77998..78000,78004..78006,78217..78219,78229..78231, 78250..78252,78256..78261) /gene="moeB" /locus_tag="AGROH133_02905" /note="substrate interface [chemical binding]; other site" /db_xref="CDD:30111" gene 78291..78767 /locus_tag="AGROH133_02906" /db_xref="GeneID:10265830" CDS 78291..78767 /locus_tag="AGROH133_02906" /note="Acetyltransferases" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_004277385.1" /db_xref="GI:325291521" /db_xref="GeneID:10265830" /translation="MTEITRIGEEFERWQELLALIMSSFAYMDGVIDPPSSAHRLTLE NLAEKARAETAFVALDGDEIVGCLFCRQEPPACLYVGKLCVSLKAQGKGIGKMLLERA EALARELALPALRLETRIELVGNHAKFAVWGFIKTAENAHPGYHRTTSIEMTKFLG" misc_feature 78456..>78581 /locus_tag="AGROH133_02906" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature order(78537..78545,78573..78578) /locus_tag="AGROH133_02906" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(78847..79851) /locus_tag="AGROH133_02907" /db_xref="GeneID:10265831" CDS complement(78847..79851) /locus_tag="AGROH133_02907" /EC_number="1.1.1.26" /note="D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Lactate dehydrogenase and related dehydrogenases" /codon_start=1 /transl_table=11 /product="D-isomer specific 2-hydroxyacid dehydrogenases family protein" /protein_id="YP_004277386.1" /db_xref="GI:325291522" /db_xref="GeneID:10265831" /translation="MTHKKRPTVYITRKLPDVVETRMRELFDAELNIDDTQRREEELV AAMQRVDVLVPTVTDRITAAMIEKAGPQLKLIASFSNGIDHVDVDAAARKGITVTNTP NVLTEDSADITMALVLAVPRRLIEGTRVLANGADEWLGWSPTWMLGRRISGKRIGIVG MGRIGTAVARRAKAFGLSIHYHNRKRVNPATEAELEATYWDSLDQMLARVDIVSVNCP STPATYHLISARRLALMQPTSYIVNTARGDIIDEAAMIQCLRDGKIAGAGLDVYENEP AINPKLIKLAREGKVVLLPHMGSATIEGRIEMGDKVIINIRTLFDGHRPPNRVLPGRN " misc_feature complement(78856..79839) /locus_tag="AGROH133_02907" /note="Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052" /db_xref="CDD:31252" misc_feature complement(78958..79512) /locus_tag="AGROH133_02907" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 80026..80565 /locus_tag="AGROH133_02908" /db_xref="GeneID:10265832" CDS 80026..80565 /locus_tag="AGROH133_02908" /note="Bacterial SH3-like region; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277387.1" /db_xref="GI:325291523" /db_xref="GeneID:10265832" /translation="MGMRSVVSMVCIALSLGLFGVANEAMAQGAAKGASGLPLPRFVS LKSKRVNMRIGPSTDYAVSWMYMKSGMPVEIIQEYENWRRIRDADGTEGWVNQALLSG ERTAVAAPWMRGKGKDVYVNMRRDAQSGASVIARLEPGVVFRIGECNGDWCRAEAGQA SGWVSQGEIWGAYPGEAFK" misc_feature 80044..80562 /locus_tag="AGROH133_02908" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3807" /db_xref="CDD:33601" misc_feature 80161..80331 /locus_tag="AGROH133_02908" /note="Bacterial SH3 domain; Region: SH3_3; cl02551" /db_xref="CDD:141512" misc_feature 80374..80538 /locus_tag="AGROH133_02908" /note="Bacterial SH3 domain; Region: SH3_3; cl02551" /db_xref="CDD:141512" gene complement(80558..81550) /locus_tag="AGROH133_02910" /db_xref="GeneID:10265833" CDS complement(80558..81550) /locus_tag="AGROH133_02910" /EC_number="2.7.1.4" /note="pfkB family carbohydrate kinase; Sugar kinases, ribokinase family" /codon_start=1 /transl_table=11 /product="carbohydrate kinase, PfkB family" /protein_id="YP_004277388.1" /db_xref="GI:325291524" /db_xref="GeneID:10265833" /translation="MTKFDVLTVGNAIVDIISRCDDRFLNDNAITKGAMNLIDAERAE LLYSLMGPALEASGGSAGNTAAGVANFGGRAAYFGKVAEDQLGEIFQHDIRAQGVYFE TKPEGTFPPTARSMIFVTEDGERSMNTYLGACVDLGPEDVEEDVVANTKVTYFEGYLW DPPRAKDAIRDCARIAHENGREVSMTLSDSFCVGRYREEFLDLMRSGTVDIVFANKQE ALSLYETDDFELALTKIAADCKIAAVTMSEEGAVILRGTERVKVEAYPVYDVVDTTGA GDLFAAGFLFGYTQDRSLEDCGKLGCLAAAAVIQQVGPRPMSSLKALGEKNGLI" misc_feature complement(80603..81544) /locus_tag="AGROH133_02910" /note="Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular...; Region: adenosine_kinase; cd01168" /db_xref="CDD:29352" misc_feature complement(order(80717..80719,80726..80731,80978..80980, 81077..81079,81158..81160,81164..81166,81170..81172, 81206..81208,81362..81364,81371..81379,81446..81448, 81506..81508,81512..81514,81518..81520)) /locus_tag="AGROH133_02910" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29352" misc_feature complement(order(80624..80626,80636..80638,80711..80713, 80720..80725,80732..80734,80741..80743,80759..80761, 80765..80767,80798..80800,80807..80812,80816..80818)) /locus_tag="AGROH133_02910" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29352" gene 82086..83030 /locus_tag="AGROH133_02911" /db_xref="GeneID:10265834" CDS 82086..83030 /locus_tag="AGROH133_02911" /note="Auxin efflux carrier, Membrane transport protein; Predicted permeases" /codon_start=1 /transl_table=11 /product="Auxin Efflux Carrier" /protein_id="YP_004277389.1" /db_xref="GI:325291525" /db_xref="GeneID:10265834" /translation="MSAVAANVAPIFILILIGWLTVKAGLFRADAGEILSDFVFKIAV PTLIFRTLAEANFHGASPFRLWLTYFAGVAVTWTVGHIVTRYIFKQDSRIAVIAGISS AFANNIFIGLPLVGRSIGDEGLVALSILLAIHLPVMMIAGTILMENATHKAVGGEKRS MASVFRQVGRNLITNPLVIGLFIGLSTNVSGVTLTPILKTVVDQIASMAGPAALISLG MALTKYTIRGNLGIAVTMTVFKLLLLPACVWAMGHALGLSREWTAALVLTSSVPTGVN AWLIANRFGIGHSVAASTISISTATGVLSVSLWAWLLS" misc_feature 82086..82955 /locus_tag="AGROH133_02911" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene complement(83046..84062) /gene="rsmC" /locus_tag="AGROH133_02921" /db_xref="GeneID:10265835" CDS complement(83046..84062) /gene="rsmC" /locus_tag="AGROH133_02921" /EC_number="2.1.1.171" /note="16S RNA G1207 methylase RsmC" /codon_start=1 /transl_table=11 /product="ribosomal RNA small subunit methyltransferase" /protein_id="YP_004277390.1" /db_xref="GI:325291526" /db_xref="GeneID:10265835" /translation="MSRDAVKTLFHPFAAEMLDLPKEGERVLFLGAEAGPRLDGFNAD IVSVQNFRPLYRALQAQNAEVTPDISGEDYDAALLLCGKHRGENENRVAEALSRVKAG GLIVAAGSKEDGILTLRKTLAKLGIEAESTPKYHGVALWFKRPEDVASAVSKLAQHSV TVAGRFTAMPGMFSHDRVDDGSELLASRLPTDFDGNAADFGAGWGYLSVMLAEKSPRT ARIDLFEADWNALEFAKTNLLENNPRLTARFFWQDLANEPPKEKYDLIIMNPPFHAAG QAAEPALGQAFIKTAAGALRNGGKLLMVANRGMPYEPVLAAEFRTSTEVCRNARFKIL SAQK" misc_feature complement(83049..83936) /gene="rsmC" /locus_tag="AGROH133_02921" /note="16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; Region: RsmC; COG2813" /db_xref="CDD:32642" misc_feature complement(83151..83468) /gene="rsmC" /locus_tag="AGROH133_02921" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(83256..83258,83301..83309,83385..83390, 83445..83465)) /gene="rsmC" /locus_tag="AGROH133_02921" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(84138..86285) /gene="pnpA" /locus_tag="AGROH133_02922" /db_xref="GeneID:10265836" CDS complement(84138..86285) /gene="pnpA" /locus_tag="AGROH133_02922" /EC_number="2.7.7.8" /note="polynucleotide phosphorylase/polyadenylase; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)" /codon_start=1 /transl_table=11 /product="polynucleotide phosphorylase" /protein_id="YP_004277391.1" /db_xref="GI:325291527" /db_xref="GeneID:10265836" /translation="MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATV VSAKSPKPGQDFFPLTVNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPL FPEGYKNDTQVVVTVIQHDLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGE YVLNPHLDEMDESVLDLVVAGTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDA IIKLAEVAAKEPREFEPEDFSALENEMLGLAETELRTAYKITEKAARYAAVDAVKAKV KAHFLPEEGEAKYSPEEIGAVFKHLQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGI LPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETG RMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSEITESNGSSSMATVCGTSLA LMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTADGITSLQM DIKIAGITEEIMKIALEQAQGGRKHILGEMANAITESRGQLGEFAPRIEVMNIPVDKI REVIGSGGKVIREIVEKTGAKINIEDDGTVKIASASGKEIEAARKWIHSIVAEPEVGQ IYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTSDVVKEGDKVWVKLMGFDE RGKVRLSMKVVDQATGKEVAADKKREDGEAAAE" misc_feature complement(84204..86285) /gene="pnpA" /locus_tag="AGROH133_02922" /note="polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824" /db_xref="CDD:183327" misc_feature complement(85854..86249) /gene="pnpA" /locus_tag="AGROH133_02922" /note="3' exoribonuclease family, domain 1; Region: RNase_PH; pfam01138" /db_xref="CDD:189854" misc_feature complement(85653..85847) /gene="pnpA" /locus_tag="AGROH133_02922" /note="3' exoribonuclease family, domain 2; Region: RNase_PH_C; pfam03725" /db_xref="CDD:190728" misc_feature complement(85323..85568) /gene="pnpA" /locus_tag="AGROH133_02922" /note="Polyribonucleotide nucleotidyltransferase, RNA binding domain; Region: PNPase; pfam03726" /db_xref="CDD:146390" misc_feature complement(84915..85310) /gene="pnpA" /locus_tag="AGROH133_02922" /note="3' exoribonuclease family, domain 1; Region: RNase_PH; pfam01138" /db_xref="CDD:189854" misc_feature complement(84702..84905) /gene="pnpA" /locus_tag="AGROH133_02922" /note="3' exoribonuclease family, domain 2; Region: RNase_PH_C; pfam03725" /db_xref="CDD:190728" misc_feature complement(84447..84626) /gene="pnpA" /locus_tag="AGROH133_02922" /note="Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393" /db_xref="CDD:29003" misc_feature complement(order(84516..84527,84540..84545,84552..84557, 84564..84578,84582..84590,84594..84596)) /gene="pnpA" /locus_tag="AGROH133_02922" /note="putative nucleic acid binding region [nucleotide binding]; other site" /db_xref="CDD:29003" misc_feature complement(84564..84575) /gene="pnpA" /locus_tag="AGROH133_02922" /note="G-X-X-G motif; other site" /db_xref="CDD:29003" misc_feature complement(84216..84419) /gene="pnpA" /locus_tag="AGROH133_02922" /note="S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA...; Region: S1_PNPase; cd04472" /db_xref="CDD:88437" misc_feature complement(order(84333..84335,84339..84341,84369..84371, 84393..84395)) /gene="pnpA" /locus_tag="AGROH133_02922" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88437" misc_feature complement(84273..84278) /gene="pnpA" /locus_tag="AGROH133_02922" /note="domain interface; other site" /db_xref="CDD:88437" gene complement(86556..86825) /gene="rpsO" /locus_tag="AGROH133_02923" /db_xref="GeneID:10265837" CDS complement(86556..86825) /gene="rpsO" /locus_tag="AGROH133_02923" /note="primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; Ribosomal protein S15P/S13E" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S15" /protein_id="YP_004277392.1" /db_xref="GI:325291528" /db_xref="GeneID:10265837" /translation="MSITAERKAALIKEYATNEGDTGSPEVQVAILTERINNLTGHFK DHKKDNHSRRGLLTLVSSRRSLLDYLKKKDEARYSKLIGALGIRR" misc_feature complement(86568..86807) /gene="rpsO" /locus_tag="AGROH133_02923" /note="Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole...; Region: Ribosomal_S15p_S13e; cd00353" /db_xref="CDD:48353" misc_feature complement(order(86619..86621,86631..86633,86670..86675, 86679..86684,86688..86690,86700..86702,86709..86711, 86721..86723,86742..86744,86751..86753,86802..86804)) /gene="rpsO" /locus_tag="AGROH133_02923" /note="16S/18S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:48353" misc_feature complement(order(86574..86576,86586..86588,86706..86708, 86715..86717,86724..86729,86736..86738)) /gene="rpsO" /locus_tag="AGROH133_02923" /note="S13e-L30e interaction site [polypeptide binding]; other site" /db_xref="CDD:48353" misc_feature complement(order(86568..86573,86634..86636,86646..86648)) /gene="rpsO" /locus_tag="AGROH133_02923" /note="25S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:48353" gene complement(86989..87936) /gene="truB" /locus_tag="AGROH133_02924" /db_xref="GeneID:10265838" CDS complement(86989..87936) /gene="truB" /locus_tag="AGROH133_02924" /EC_number="4.2.1.70" /note="catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; Pseudouridine synthase" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase B" /protein_id="YP_004277393.1" /db_xref="GI:325291529" /db_xref="GeneID:10265838" /translation="MSKPRKQQNRKPKGRPISGWLILDKPLDFGSTEAVSKIKWLFNA QKAGHAGTLDPLASGMLPIALGDATKTVPYVMDGRKIYEFTVTWGEERATDDLEGEVV NSSDQRPDEQAIRDILPNYTGVIMQTPPQFSAIKIAGERAYDLAREGETVEIPAREVE IHRLTLLACPDADTAHFEVECGKGTYVRALARDMGRDLGCFGHISQLRRTMVAPFGED MMVPLETLTALEAIEDRDERLEALDAFLIDTAEALSSLPHLIINDDQAHRLKMGNPIL LRGRDAPANHPEAYATAHGKLIAIGEIGEGEFRPKRVFG" misc_feature complement(86992..87909) /gene="truB" /locus_tag="AGROH133_02924" /note="tRNA pseudouridine synthase B; Provisional; Region: truB; PRK05389" /db_xref="CDD:180052" misc_feature complement(87028..87882) /gene="truB" /locus_tag="AGROH133_02924" /note="PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of...; Region: PseudoU_synth_EcTruB; cd02573" /db_xref="CDD:30022" misc_feature complement(order(87310..87312,87373..87390,87466..87468, 87529..87543,87691..87693,87697..87699,87709..87711, 87718..87723,87730..87732,87772..87786,87790..87798, 87832..87834,87841..87843,87847..87849)) /gene="truB" /locus_tag="AGROH133_02924" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:30022" misc_feature complement(order(87373..87375,87775..87786)) /gene="truB" /locus_tag="AGROH133_02924" /note="active site" /db_xref="CDD:30022" gene complement(87940..88356) /gene="rbfA" /locus_tag="AGROH133_02925" /db_xref="GeneID:10265839" CDS complement(87940..88356) /gene="rbfA" /locus_tag="AGROH133_02925" /note="associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock" /codon_start=1 /transl_table=11 /product="Ribosome-binding factor A" /protein_id="YP_004277394.1" /db_xref="GI:325291530" /db_xref="GeneID:10265839" /translation="MAKATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVIS ISEVRMSPDLKIATAYVTPLGVADHTDIITALNRHAKFMRGRLGPQLRQMKYMPELRF RDDTSFDNYQKIDALLRSPEVQRDLGPSNEKDDEQN" misc_feature complement(87976..88341) /gene="rbfA" /locus_tag="AGROH133_02925" /note="Ribosome-binding factor A; Region: RBFA; cl00542" /db_xref="CDD:186071" gene complement(88432..91179) /gene="infB" /locus_tag="AGROH133_02926" /db_xref="GeneID:10265840" CDS complement(88432..91179) /gene="infB" /locus_tag="AGROH133_02926" /note="Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Translation initiation factor 2 (IF-2; GTPase)" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-2" /protein_id="YP_004277395.1" /db_xref="GI:325291531" /db_xref="GeneID:10265840" /translation="MTDNNDDKTLNAPAKKTLTLKPGGMNQGTVRQDMGRGRTNAVVV ETRKRRPLRPEDEKPVQPVVAAAPAPKPAAPAPSAPRPQAPQQRIQQPSNQQQRPGSS HSQQRPGSSAPQQRQPDRPRGNVLHDLSAGEMEARRRALIEAQARDVIEAKQRAEDEA RRKVEEEQRIAAEKIEAENRAAEEAAAAKIAASQPVTEAKSDLSGEKPAATAAPAPRA DARPQPVAPRSAPATPDAAAPRGRRTGGDDEDDRGAVRRGSSLPARGKVVAPVPAKPA ARLKTEEERRRGKLTVTAANLEEDGTPRGRSMASMRRRQEKFRRSQMQETREKVLREV ILPETITIQELSQRMSERAVDVIKFLMKEGQMLKPGDVIDADLAELIAVEFGHTVKRV SESDVEEGLFNKADDEGEMVSRPPVVTIMGHVDHGKTSLLDAIRQANVVAGEAGGITQ HIGAYQVEKNGQKITFIDTPGHAAFTAMRARGAQATDIAVLVVAADDSVMPQTIESIN HAKAAGVPIVVAINKIDKHEANPEKVRQQLLQHEVFVESMGGEVLDVEVSAKNKLNLD KLLEAILLQAEILDLKADPSRTAEGTVIEAELDRGRGAVATVLVQKGTLKPGQIIVAG DQWGRVRALVNDKGDHVKEAGPAMPVEILGLSGTPSAGDRFAVVENEGRAREISEYRQ RLARDKAVARQTGQRGSLEQMMSQLQTSGLKEFPLVIKADVQGSVEAIIASLDKLGTD EVRARVVHSGAGAITESDISLAEASNAAIIGFNVRANAQARTASERAGIEIRYYNIIY DLVDDVKAAMSGLLSPERRETFLGNAEILEVFNITKVGKVAGCRVVEGKVERGAGVRL VRDNVVIHEGKLKTLKRFKDEVNEVPVGQECGMAFENYEDIRAGDTIECFRVEHITRT L" misc_feature complement(91012..91140) /gene="infB" /locus_tag="AGROH133_02926" /note="Bacterial translation initiation factor IF-2 associated region; Region: IF2_assoc; pfam08364" /db_xref="CDD:192015" misc_feature complement(88435..90186) /gene="infB" /locus_tag="AGROH133_02926" /note="translation initiation factor IF-2; Region: IF-2; TIGR00487" /db_xref="CDD:161900" misc_feature complement(90016..90171) /gene="infB" /locus_tag="AGROH133_02926" /note="Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760" /db_xref="CDD:147093" misc_feature complement(89479..89934) /gene="infB" /locus_tag="AGROH133_02926" /note="IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases...; Region: IF2_eIF5B; cd01887" /db_xref="CDD:133287" misc_feature complement(89893..89916) /gene="infB" /locus_tag="AGROH133_02926" /note="G1 box; other site" /db_xref="CDD:133287" misc_feature complement(order(89572..89574,89584..89586,89689..89694, 89761..89766,89818..89823,89869..89874,89881..89883, 89890..89895,89905..89907,89911..89913)) /gene="infB" /locus_tag="AGROH133_02926" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133287" misc_feature complement(order(89500..89508,89602..89607,89611..89616, 89761..89763,89890..89910)) /gene="infB" /locus_tag="AGROH133_02926" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133287" misc_feature complement(89821..89841) /gene="infB" /locus_tag="AGROH133_02926" /note="Switch I region; other site" /db_xref="CDD:133287" misc_feature complement(89833..89835) /gene="infB" /locus_tag="AGROH133_02926" /note="G2 box; other site" /db_xref="CDD:133287" misc_feature complement(89767..89778) /gene="infB" /locus_tag="AGROH133_02926" /note="G3 box; other site" /db_xref="CDD:133287" misc_feature complement(89716..89772) /gene="infB" /locus_tag="AGROH133_02926" /note="Switch II region; other site" /db_xref="CDD:133287" misc_feature complement(89605..89616) /gene="infB" /locus_tag="AGROH133_02926" /note="G4 box; other site" /db_xref="CDD:133287" misc_feature complement(89500..89508) /gene="infB" /locus_tag="AGROH133_02926" /note="G5 box; other site" /db_xref="CDD:133287" misc_feature complement(89131..89415) /gene="infB" /locus_tag="AGROH133_02926" /note="This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the...; Region: IF2_mtIF2_II; cd03702" /db_xref="CDD:58093" misc_feature complement(88762..89085) /gene="infB" /locus_tag="AGROH133_02926" /note="Translation-initiation factor 2; Region: IF-2; pfam11987" /db_xref="CDD:152422" misc_feature complement(88465..88716) /gene="infB" /locus_tag="AGROH133_02926" /note="mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation...; Region: mtIF2_IVc; cd03692" /db_xref="CDD:58083" gene complement(91282..91983) /locus_tag="AGROH133_02927" /db_xref="GeneID:10265841" CDS complement(91282..91983) /locus_tag="AGROH133_02927" /note="Protein of unknown function DUF448; Predicted nucleic-acid-binding protein implicated in transcription termination" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277396.1" /db_xref="GI:325291532" /db_xref="GeneID:10265841" /translation="MTSQVHEPDELPETDEDGRLEGNVNGRMCIVTRQSGSPDELIRF VAGPDGNVVPDLKRQLPGRGCWVKPERALIEKAIAKKIFARALKRDVKAGPELLALLD RLMSQQLAGMMNMARKAGQFISGATKVDAAVRSGNAIAVFHATDAAADGVRKLDQARK AWELGSDAGNEIPSFRLFSEAEMDELMGQNAFIHACALAGQAGEGVVKRAKMLKQYRL GGQPEAERDAARTVQ" misc_feature complement(91288..91950) /locus_tag="AGROH133_02927" /note="hypothetical protein; Provisional; Region: PRK09190" /db_xref="CDD:181685" misc_feature complement(<91720..91905) /locus_tag="AGROH133_02927" /note="Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation; Region: YlxR; cd00279" /db_xref="CDD:29345" misc_feature complement(order(91786..91788,91855..91857,91903..91905)) /locus_tag="AGROH133_02927" /note="putative RNA binding cleft [nucleotide binding]; other site" /db_xref="CDD:29345" misc_feature complement(91384..91668) /locus_tag="AGROH133_02927" /note="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; Region: Ribosomal_L7Ae; cl00600" /db_xref="CDD:189122" gene complement(91980..93596) /gene="nusA" /locus_tag="AGROH133_02928" /db_xref="GeneID:10265842" CDS complement(91980..93596) /gene="nusA" /locus_tag="AGROH133_02928" /note="modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; Transcription elongation factor" /codon_start=1 /transl_table=11 /product="transcription elongation factor NusA" /protein_id="YP_004277397.1" /db_xref="GI:325291533" /db_xref="GeneID:10265842" /translation="MAVSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRY GSETNIRADINSKTGEIRLQRLLEVVETAEDYSTQIPLELARDRNPDAKLGDFIADPL PPMDFGRIAAQSAKQVIVQKVREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLG RGEGIIRRDEMIPRENMRYGDRVRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVP EIYDGIIQIKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVGELQGEKID IIPWSQEPASFIVNALQPAEVAKVVLDEESERIEVVVPDEQLSLAIGRRGQNVRLASQ LTGWDIDIMTEQEESERRQKEFNERTALFMDALDVDEMVGQVLASEGFAQVEELAYVD LGEISSIDGFDDDTADEIQTRAREYLERLEAEMDAKRKELGVADELRQIEGLTSQMMV ALGEDGIKTIEDFAGCAADDLVGWSERKDGETKKFEGIFSKLDVSRVEAENMVVQARL LAGWITAEDLASEEEVDAEATEEADTAEQE" misc_feature complement(92160..93581) /gene="nusA" /locus_tag="AGROH133_02928" /note="transcription elongation factor NusA; Validated; Region: nusA; PRK09202" /db_xref="CDD:181696" misc_feature complement(93207..93572) /gene="nusA" /locus_tag="AGROH133_02928" /note="NusA N-terminal domain; Region: NusA_N; pfam08529" /db_xref="CDD:192057" misc_feature complement(92988..93188) /gene="nusA" /locus_tag="AGROH133_02928" /note="S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and...; Region: S1_NusA; cd04455" /db_xref="CDD:88421" misc_feature complement(order(93096..93098,93102..93104,93129..93131, 93153..93155)) /gene="nusA" /locus_tag="AGROH133_02928" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88421" misc_feature complement(order(93003..93005,93102..93104,93108..93110, 93135..93137,93147..93149)) /gene="nusA" /locus_tag="AGROH133_02928" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:88421" misc_feature complement(92568..92747) /gene="nusA" /locus_tag="AGROH133_02928" /note="NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134" /db_xref="CDD:48406" misc_feature complement(92619..92630) /gene="nusA" /locus_tag="AGROH133_02928" /note="G-X-X-G motif; other site" /db_xref="CDD:48406" misc_feature complement(92361..92492) /gene="nusA" /locus_tag="AGROH133_02928" /note="transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954" /db_xref="CDD:131009" gene complement(93661..94257) /locus_tag="AGROH133_02929" /db_xref="GeneID:10265843" CDS complement(93661..94257) /locus_tag="AGROH133_02929" /note="Protein of unknown function DUF150; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277398.1" /db_xref="GI:325291534" /db_xref="GeneID:10265843" /translation="MADTVHEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQN GMTLQVMAEREDGTMTVEGCEAVSMAISPVLDVEDPVDKAYHLEVSSPGIDRPMVRKS DFTRWQGHLVKAETSILVENRKRFRGKIVEVDADGFKLERDQIAYGDEPTVTIPFSAL SDAKLILTDDLIRDALRADKAAKAAAANQNDENEADED" misc_feature complement(<93862..94227) /locus_tag="AGROH133_02929" /note="The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members...; Region: Sm_like; cl00259" /db_xref="CDD:193733" misc_feature complement(93757..94224) /locus_tag="AGROH133_02929" /note="ribosome maturation protein RimP; Reviewed; Region: PRK00092" /db_xref="CDD:178857" misc_feature complement(93760..94005) /locus_tag="AGROH133_02929" /note="The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members...; Region: Sm_like; cl00259" /db_xref="CDD:193733" misc_feature complement(order(93835..93888,93904..93924)) /locus_tag="AGROH133_02929" /note="Sm1 motif; other site" /db_xref="CDD:99752" misc_feature complement(order(93766..93783,93787..93792,93796..93804, 93841..93843,93862..93864,93880..93882,93886..93888, 93904..93909,93913..93915)) /locus_tag="AGROH133_02929" /note="D3 - B interaction site; other site" /db_xref="CDD:99752" misc_feature complement(order(93766..93780,93787..93789,93883..93885, 93907..93909,93913..93915)) /locus_tag="AGROH133_02929" /note="D1 - D2 interaction site; other site" /db_xref="CDD:99752" misc_feature complement(order(93766..93780,93784..93801,93856..93858, 93904..93912)) /locus_tag="AGROH133_02929" /note="Hfq - Hfq interaction site; other site" /db_xref="CDD:99752" misc_feature complement(order(93790..93792,93850..93852,93856..93858)) /locus_tag="AGROH133_02929" /note="RNA binding pocket [nucleotide binding]; other site" /db_xref="CDD:99752" misc_feature complement(93769..93804) /locus_tag="AGROH133_02929" /note="Sm2 motif; other site" /db_xref="CDD:99752" gene 94545..96173 /locus_tag="AGROH133_02930" /db_xref="GeneID:10265844" CDS 94545..96173 /locus_tag="AGROH133_02930" /note="Protein of unknown function DUF894, DitE; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004277399.1" /db_xref="GI:325291535" /db_xref="GeneID:10265844" /translation="MPDRKSPLAPLRHLTYRRIWIASLASNFGGLIQAVGAAWMMTSL SSSENMIALVQASTSLPIMMFSLISGALADSFDRRRIMISAQILMLTASVLLTVFAWS GWLTPWLLLFFTFMIGCGTALNNPSWQASVGEMVPREDLPAAVTLNSVGFNITRSVGP AIGGIIVAAAGAAAAFFVNALSYFALIYALVRWQPPKYASTLPREQLLAAISAGMRYV AMSPNIGKVLVRGFLFGLSASAILALMPIVARDLVEGGPLTYGVMLGAFGVGAIAGAL VSARLREVLSSEWIVRVAFLGFAFSSGVTAVSTNAIVTSLVLTIAGACWVLALSLFNT IVQLSAPRWVVGRALSLYQTLTFGGIAVGSWLWGELAEDYGISYSLLGSCVLMLLGVV VGLKLAMPAFASLNLDPLNRFVEPPLRLDIKPRSGPIAILIDYEIHDEDLGEFLPLMA ERRRIRLRDGARNWNLMRDLENPDIWTESYHVLTWVEYVRHNHRRTQADAEAWDRLLA LHRGKTRPRVHRMIERQTIPPTDDIFHKPHTDQH" misc_feature 94560..96122 /locus_tag="AGROH133_02930" /note="Bacterial protein of unknown function (DUF894); Region: DUF894; pfam05977" /db_xref="CDD:147889" misc_feature 94599..95681 /locus_tag="AGROH133_02930" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(94632..94634,94641..94649,94653..94658,94707..94709, 94716..94721,94728..94730,94740..94745,94749..94754, 94905..94910,94917..94922,94929..94934,94941..94943, 94977..94982,94989..94994,95010..95012,95247..95249, 95256..95261,95268..95273,95280..95282,95322..95324, 95334..95336,95346..95348,95355..95357,95367..95369, 95508..95510,95517..95522,95529..95531,95541..95546, 95553..95555,95586..95591,95598..95603,95610..95615, 95622..95624) /locus_tag="AGROH133_02930" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(96264..97586) /gene="mltB" /locus_tag="AGROH133_02941" /db_xref="GeneID:10265845" CDS complement(96264..97586) /gene="mltB" /locus_tag="AGROH133_02941" /EC_number="3.2.1.-" /note="Membrane-bound lytic murein transglycosylase B" /codon_start=1 /transl_table=11 /product="lytic murein transglycosylase" /protein_id="YP_004277400.1" /db_xref="GI:325291536" /db_xref="GeneID:10265845" /translation="MRNRFDSLFWRISRRKTGLHFSWKSLKALAAILSVFSATDALAQ SAPTGAAAARYDAGFNAWLKKEIWPEARKAGISQKTLEAALSGLSINWSLPDLVIPGQ KPPKEQSQSQAEFSSPGAYFSEKRLQGLAATGRSLAATHAATLRRIEAKYGVPGDVVL AIWGRESGFGRAKLPHSVVDVLATKAYMSTRKEMFRTELIDALKIVESGDIAASRMMG SWAGALGQPQFMPSSYLKYAVDFDGDGHRDIWNSVPDALASIANYLSQRGWQRDRDWG FEVSIPGNVSCAQEGPDLARPVSAWAKMGITRISGKAFPSNDLSADGMMLVPAGRHGP EFVVTPNFYVIKEYNNSDLYALFIGNLADRISHGAGPFKGEWGNVGSMLRSDVLAMQK ALVAKGYDVGKADGLAGFKTRRSLGDWQAKNGLSPTCFPDATLKAKLK" misc_feature complement(96486..97415) /gene="mltB" /locus_tag="AGROH133_02941" /note="lytic murein transglycosylase; Region: MltB_2; TIGR02283" /db_xref="CDD:162796" misc_feature complement(<96756..96995) /gene="mltB" /locus_tag="AGROH133_02941" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature complement(order(96798..96800,96897..96899,96966..96968)) /gene="mltB" /locus_tag="AGROH133_02941" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature complement(96966..96968) /gene="mltB" /locus_tag="AGROH133_02941" /note="catalytic residue [active]" /db_xref="CDD:29556" misc_feature complement(96276..96437) /gene="mltB" /locus_tag="AGROH133_02941" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene complement(97626..98231) /gene="recR" /locus_tag="AGROH133_02943" /db_xref="GeneID:10265846" CDS complement(97626..98231) /gene="recR" /locus_tag="AGROH133_02943" /note="involved in a recombinational process of DNA repair, independent of the recBC complex; Recombinational DNA repair protein (RecF pathway)" /codon_start=1 /transl_table=11 /product="recombination protein RecR" /protein_id="YP_004277401.1" /db_xref="GI:325291537" /db_xref="GeneID:10265846" /translation="MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLG PLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRRDQSVIIVVEDVSDLWALERAGA MNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT DHLADLGIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI" misc_feature complement(97665..98216) /gene="recR" /locus_tag="AGROH133_02943" /note="recombination protein RecR; Reviewed; Region: recR; PRK00076" /db_xref="CDD:178844" misc_feature complement(97989..98111) /gene="recR" /locus_tag="AGROH133_02943" /note="RecR protein; Region: RecR; pfam02132" /db_xref="CDD:145340" misc_feature complement(97665..97985) /gene="recR" /locus_tag="AGROH133_02943" /note="TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a...; Region: TOPRIM_recR; cd01025" /db_xref="CDD:173775" misc_feature complement(order(97779..97781,97785..97787,97791..97793, 97953..97955,97962..97967)) /gene="recR" /locus_tag="AGROH133_02943" /note="putative active site [active]" /db_xref="CDD:173775" misc_feature complement(order(97791..97793,97965..97967)) /gene="recR" /locus_tag="AGROH133_02943" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173775" misc_feature complement(order(97668..97670,97683..97685,97689..97724, 97752..97754,97788..97790,97797..97799,97803..97805, 97809..97811,97932..97937,97941..97949)) /gene="recR" /locus_tag="AGROH133_02943" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:173775" gene 98269..98904 /locus_tag="AGROH133_02944" /db_xref="GeneID:10265847" CDS 98269..98904 /locus_tag="AGROH133_02944" /note="Molybdenum cofactor sulphurase, C-terminal-like; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277402.1" /db_xref="GI:325291538" /db_xref="GeneID:10265847" /translation="MKREGQSMKIRAVCRGEAKALPGKTAKTGIFKHAVQGAVMVDAQ GIVSDAVCNRKHHGGPDQAIYAMGSADLDFWSRTLGFVVEPGFFGENLVLEGVDSAKL HVGDRFSAEEVVLEVTAARIPCATLSARLGDPGFAPRFRQAGQPGFYCRVLKGGMLSA GEGIAFEPYQGTKLPIPVILHRFRPMQLTRDERAAYLGTPLASRFRAMLEV" misc_feature 98290..98898 /locus_tag="AGROH133_02944" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2258" /db_xref="CDD:32439" misc_feature 98401..98766 /locus_tag="AGROH133_02944" /note="MOSC domain; Region: MOSC; pfam03473" /db_xref="CDD:146227" gene complement(98918..99241) /locus_tag="AGROH133_02945" /db_xref="GeneID:10265848" CDS complement(98918..99241) /locus_tag="AGROH133_02945" /note="Conserved hypothetical protein CHP00103, Uncharacterised BCR, YbaB family COG0718; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277403.1" /db_xref="GI:325291539" /db_xref="GeneID:10265848" /translation="MRDIMGMMGKVKEMQAKMEKMQADIAALEVEGKSGGGLVTVKLN GKGSLLGLKIDPSLFKEDDVEILEDLIVAAHNDAKERAEAITAEKTKEITAGLPIPPG MKLPF" misc_feature complement(98933..99241) /locus_tag="AGROH133_02945" /note="Uncharacterised BCR, YbaB family COG0718; Region: DUF149; cl00494" /db_xref="CDD:186034" gene complement(99269..101146) /gene="dnaX" /locus_tag="AGROH133_02946" /db_xref="GeneID:10265849" CDS complement(99269..101146) /gene="dnaX" /locus_tag="AGROH133_02946" /EC_number="2.7.7.7" /note="catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III, gamma/tau subunits" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunits gamma and tau" /protein_id="YP_004277404.1" /db_xref="GI:325291540" /db_xref="GeneID:10265849" /translation="MSDTLPTTSSESQGGTGYRVLARKYRPKDFSDLMVGQEPMVRTL TNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTDTIDKPTIDLRIPGEHCQAI MEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLL KTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRISAADLVGLFTAIAGKEGFEA EPQALSMIARAAEGSARDGLSLLDQAIAHGGGRVEAEAVRGMLGLADRARIVDLFQHI IKGDVAAALSEFNGQYEAGANPVVVLNDLADFTHLVTRMKYVPDAAEDPSLSEIERVR GAEFAETIAVTALSRIWQMLLKGIPETENASRPAGAAEMVLIRLSHAANLPAPEDAAR RLLELSNSDGGYSNGAPSGGGNGGGARAYSSGQTVAAGRPVELPAQRPASSQPSTMLR AVPDSRPQEMQVAAPKTEERPEPKVPVNSLQDIADLCQKNRDPVMRAKVRNFVRLVRL EPGRLDMRLGDGAPGSLPGELGVKLKEWTGIHWIVSLSKEQGQPTLVEAEGSARDARL VDARQDPDVAAILQQFPGAKITDVRIRVTQQDEPDEIAPPPSVAESSEGDILPGDDIE F" misc_feature complement(99281..101122) /gene="dnaX" /locus_tag="AGROH133_02946" /note="DNA polymerase III subunits gamma and tau; Validated; Region: PRK09111" /db_xref="CDD:181656" misc_feature complement(100571..101044) /gene="dnaX" /locus_tag="AGROH133_02946" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(100943..100966) /gene="dnaX" /locus_tag="AGROH133_02946" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(100616..100618,100709..100711, 100940..100963)) /gene="dnaX" /locus_tag="AGROH133_02946" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(100706..100723) /gene="dnaX" /locus_tag="AGROH133_02946" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(100580..100582) /gene="dnaX" /locus_tag="AGROH133_02946" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(99965..100393) /gene="dnaX" /locus_tag="AGROH133_02946" /note="DNA polymerase III subunits gamma and tau domain III; Region: DNA_pol3_gamma3; pfam12169" /db_xref="CDD:152604" misc_feature complement(99374..99724) /gene="dnaX" /locus_tag="AGROH133_02946" /note="DNA polymerase III gamma and tau subunits C terminal; Region: DUF3646; pfam12362" /db_xref="CDD:152797" gene 101495..101899 /locus_tag="AGROH133_02947" /db_xref="GeneID:10265850" CDS 101495..101899 /locus_tag="AGROH133_02947" /note="Histidine triad-like motif; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277405.1" /db_xref="GI:325291541" /db_xref="GeneID:10265850" /translation="METFRLDDRLARDSALVMRLGLCELRLQNDSRWPWLVLVPQRGG ASELFDLTPLDQAVLTFETNLVASALKDVTGATKINVGALGNIVRQLHVHIIARNEGD TCWPGPIWGHGTPVPYGPGEKESLMKKISGAL" misc_feature 101531..101797 /locus_tag="AGROH133_02947" /note="HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the...; Region: HIT_like; cl00228" /db_xref="CDD:193721" gene 101899..102861 /locus_tag="AGROH133_02948" /db_xref="GeneID:10265851" CDS 101899..102861 /locus_tag="AGROH133_02948" /EC_number="3.6.1.-" /note="NADH pyrophosphatase-like rudimentary NUDIX domain; NTP pyrophosphohydrolases containing a Zn- finger, probably nucleic-acid-binding" /codon_start=1 /transl_table=11 /product="mutT/nudix family protein" /protein_id="YP_004277406.1" /db_xref="GI:325291542" /db_xref="GeneID:10265851" /translation="MISMTIFETTAPHPEASLLTAFSKNALNRFAEKRTEDCVADALK VDGTHIFAFSGNRLVLKHDEQVIDPLFSAYELAELQPDFDNAVLLGYRETGEPRIAVP VAVTEDTLASHYKLADARTLYRDHLLDEELLSEVAQAVSLTHWNADNRFCGRCGGTME LRIGGYKRICAACNHTIFPRTDPVVIMMTIDIERDLCLLGRGAHFAPGMYSCLAGFVE PGETIEQAVRRETHEESGVEIGRVRYHASQPWPMPHTLMIGCYAEALSFDISRDEIEL EDCRWFTRAEVATMLEAAAGEGFSAPPGGAIAHRLMRDWVEWTK" misc_feature 101977..102849 /locus_tag="AGROH133_02948" /note="NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]; Region: NPY1; COG2816" /db_xref="CDD:32645" misc_feature 102037..102333 /locus_tag="AGROH133_02948" /note="NADH pyrophosphatase-like rudimentary NUDIX domain; Region: NUDIX-like; pfam09296" /db_xref="CDD:150083" misc_feature 102337..102432 /locus_tag="AGROH133_02948" /note="NADH pyrophosphatase zinc ribbon domain; Region: zf-NADH-PPase; pfam09297" /db_xref="CDD:150084" misc_feature 102445..102849 /locus_tag="AGROH133_02948" /note="NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for...; Region: NADH_pyrophosphatase; cd03429" /db_xref="CDD:72887" misc_feature order(102448..102450,102538..102546,102646..102648, 102655..102657,102661..102663,102667..102669) /locus_tag="AGROH133_02948" /note="putative NADH binding site [chemical binding]; other site" /db_xref="CDD:72887" misc_feature order(102541..102546,102550..102552,102586..102588, 102595..102600,102646..102648,102655..102657, 102661..102663,102667..102669) /locus_tag="AGROH133_02948" /note="putative active site [active]" /db_xref="CDD:72887" misc_feature 102541..102609 /locus_tag="AGROH133_02948" /note="nudix motif; other site" /db_xref="CDD:72887" misc_feature order(102586..102588,102595..102600,102721..102723) /locus_tag="AGROH133_02948" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:72887" gene complement(102877..103764) /gene="pheA" /locus_tag="AGROH133_02949" /db_xref="GeneID:10265852" CDS complement(102877..103764) /gene="pheA" /locus_tag="AGROH133_02949" /EC_number="4.2.1.51" /note="catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis" /codon_start=1 /transl_table=11 /product="Prephenate dehydratase" /protein_id="YP_004277407.1" /db_xref="GI:325291543" /db_xref="GeneID:10265852" /translation="MDNSMTLSTNRIAFQGEFGANSDMACRDMFPDMEPLPCPTFEDA FNAVENGEADLGMIPIENTLAGRVADIHHLLPESRLHIIGEYFMPIRFQLMVIPGVKK DEIRTVHSHIHALGQCRKIIRSNGWKPVVAGDTAGAARLVSEKGDRSMAALAPRLAAG LYGLDIMAENVEDSENNITRFVILSRDENWARRQSQGEAPDETIVTTFVFNVRNIPAA LYKAMGGFATNGINMTKLESYQLGGRFVATQFYADIEGHPDDEPVRHALDELRFFSEK VRILGVYKGHAMRGKLNQS" misc_feature complement(102895..103740) /gene="pheA" /locus_tag="AGROH133_02949" /note="prephenate dehydratase; Provisional; Region: PRK11899" /db_xref="CDD:183367" misc_feature complement(103198..103731) /gene="pheA" /locus_tag="AGROH133_02949" /note="Prephenate dehydratase; Region: PDT; pfam00800" /db_xref="CDD:144409" misc_feature complement(102913..103149) /gene="pheA" /locus_tag="AGROH133_02949" /note="C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905" /db_xref="CDD:153177" misc_feature complement(order(103045..103056,103105..103116)) /gene="pheA" /locus_tag="AGROH133_02949" /note="putative L-Phe binding site [chemical binding]; other site" /db_xref="CDD:153177" gene complement(103764..104519) /gene="kdsB" /locus_tag="AGROH133_02950" /db_xref="GeneID:10265853" CDS complement(103764..104519) /gene="kdsB" /locus_tag="AGROH133_02950" /EC_number="2.7.7.38" /note="CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; CMP-2-keto-3-deoxyoctulosonic acid synthetase" /codon_start=1 /transl_table=11 /product="3-deoxy-manno-octulosonate cytidylyltransferase" /protein_id="YP_004277408.1" /db_xref="GI:325291544" /db_xref="GeneID:10265853" /translation="MKNREFEKAVVLIPARMASTRLPGKPLADIGGKPMIVQVALRAR EAGATRIVVAVDDEQVFSAVKNAGFDVMMTRDDHQSGSDRIFEALQKADPYGNAEYVI NVQGDLPTIEAETIRASLRPLENAAVDIATLTVEITDEEEKTNPNVVKVVGSPLSETR LRALYFTRATAPYGDGPLYHHIGLYTYRRAALETFVRLQPSPLEKRERLEQLRALEAG MRIDAEIVHSVPLGVDTPHDLEKARTILANRTL" misc_feature complement(103785..104498) /gene="kdsB" /locus_tag="AGROH133_02950" /note="CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide; Region: CMP-KDO-Synthetase; cd02517" /db_xref="CDD:133010" misc_feature complement(order(104199..104201,104205..104207, 104277..104279,104358..104360,104472..104480)) /gene="kdsB" /locus_tag="AGROH133_02950" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133010" misc_feature complement(order(103866..103877,103896..103904, 103911..103916,103989..103991,104001..104021, 104025..104030,104058..104066,104082..104084, 104133..104135)) /gene="kdsB" /locus_tag="AGROH133_02950" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:133010" gene 104670..105242 /gene="cycM" /locus_tag="AGROH133_02951" /db_xref="GeneID:10265854" CDS 104670..105242 /gene="cycM" /locus_tag="AGROH133_02951" /note="Cytochrome c, class IA/ IB; Cytochrome c2" /codon_start=1 /transl_table=11 /product="cytochrome c" /protein_id="YP_004277409.1" /db_xref="GI:325291545" /db_xref="GeneID:10265854" /translation="MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPTPEKEGYAIVA EASGGEAAGEPAAAATPIAKLLASADAAKGEAVFKKCTSCHTGESGGANKVGPNLFDI VNRPIASHAGFSYSAAMKDFSKGGSVHWDYDHLSYFIEAPKKHVPGTAMGFAGVKKET ERADLIAYLRTLSANPAPLPDPAAAPVPIN" misc_feature <104877..105188 /gene="cycM" /locus_tag="AGROH133_02951" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene complement(105321..106049) /locus_tag="AGROH133_02954" /db_xref="GeneID:10265855" CDS complement(105321..106049) /locus_tag="AGROH133_02954" /note="Bacterial sugar transferase; Sugar transferases involved in lipopolysaccharide synthesis" /codon_start=1 /transl_table=11 /product="exopolysaccharide production protein" /protein_id="YP_004277410.1" /db_xref="GI:325291546" /db_xref="GeneID:10265855" /translation="MLGTKSSSHAVFYGAPYPAAVTFDAAETQPSISETNTSVFLRSQ FVLKRTIDIAGASIALVALAPVLLTVAALVKLDSKGPVLFSQVRWGMNGRKIRVYKFR SMRTELGDATGVAQTVKNDPRITRIGAVLRRTNVDELPQLINVLKGDMSLVGPRCHAI GMLAAGRLYEELVPHYHLRHRMRPGITGLAQMRGLRGPTDRSDKARARIVSDLYYVDN FSVWLDIKIMIGTVISELRGGKGF" misc_feature complement(105333..105908) /locus_tag="AGROH133_02954" /note="Bacterial sugar transferase; Region: Bac_transf; cl00939" /db_xref="CDD:193981" gene complement(106352..108655) /gene="pbpC" /locus_tag="AGROH133_02956" /db_xref="GeneID:10265856" CDS complement(106352..108655) /gene="pbpC" /locus_tag="AGROH133_02956" /EC_number="2.4.1.129" /note="Membrane carboxypeptidase (penicillin-binding protein)" /codon_start=1 /transl_table=11 /product="penicillin-binding protein" /protein_id="YP_004277411.1" /db_xref="GI:325291547" /db_xref="GeneID:10265856" /translation="MAGKGKSRDRVEPSFGDFHESGDDLRLDASERIGGTAKQPARKP KSTSGRAKPQKREKRTRSSGGGATGFIRSLVYWCIVLGIWGGIGVAGLVLYYGARMPS ASSWTIPERPPNVKIVSVNGSVLANRGTTGGEALALEDMSPYLPQAVMAIEDRRFYSH FGVDPLGLARAIVTNVMTGRTVQGGSTLTQQLAKNLFLSQDRTLERKVQEVLLAFWLE HKYTKDQILAMYLNRVYFGSNAFGVEAASRRYFNKSARDVNLGEAATLAGLLKAPSRL SPARDPQAAEERAQVVLRSMRDVGFITDDEIKTAMSQPPTKAKRFWSGAEHYAADMVM EEVRGLIGDVKQDIVVDTTIDPNLERDAEKALTHVLQGDGKKQGASQAALVSIDGTGA IRAVVGGADYAESQFNRAAKAKRQPGSAFKPFVYVAALESGLTPSTIRNDGPVRIGNW TPENYEKKYRGEVTLATALANSLNTIAAQLVMEVGPERVTQVAHRMGIESELQNNASI ALGTSEVSLMELTASYAPFMNGGYKATPHIVKRISDADGKVLYENRYDNPPRVLSEEI AATMNGMLSRVITEGTGKAARLQGWQAAGKSGTTQSFRDALFVGYTSNLTTGVWFGND DGTSMKKVTGGGLPAKAWKDFMTAAHSGLSPSPLFGLGAGGVPPLGEIQQPAPESAPS SIGDIISNALGGGGTTNTRAYPEAPVSPNAGQPGVPMPPGNIPSRDIEPGYSADNGPV PPADIGGRAPATSGPKQTTLLDILMGN" misc_feature complement(107765..108295) /gene="pbpC" /locus_tag="AGROH133_02956" /note="Transglycosylase; Region: Transgly; cl07896" /db_xref="CDD:195645" misc_feature complement(106700..108259) /gene="pbpC" /locus_tag="AGROH133_02956" /note="penicillin-binding protein, 1A family; Region: PBP_1a_fam; TIGR02074" /db_xref="CDD:188197" misc_feature complement(106718..107512) /gene="pbpC" /locus_tag="AGROH133_02956" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene complement(108794..109252) /locus_tag="AGROH133_02958" /db_xref="GeneID:10265857" CDS complement(108794..109252) /locus_tag="AGROH133_02958" /note="YbaK/prolyl-tRNA synthetase associated region; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277412.1" /db_xref="GI:325291548" /db_xref="GeneID:10265857" /translation="MTIESVRAFFTENSPEVTVIETETSSATVALAAEAHGVDPDQIA KTICLKAGDTILLVVAAGTKRLDNRKFRDHFGAKPRMLGAEEVVAVTSHPVGGVCPFG LPSPLPVFCDISLKNYPEVVPAAGATNAAVRISPDAMARLTGAEWVDVCQ" misc_feature complement(108803..109246) /locus_tag="AGROH133_02958" /note="This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro)...; Region: ProX_deacylase; cd04333" /db_xref="CDD:88584" misc_feature complement(order(108881..108883,108962..108967, 109118..109120)) /locus_tag="AGROH133_02958" /note="putative deacylase active site [active]" /db_xref="CDD:88584" gene complement(109262..109456) /locus_tag="AGROH133_02959" /db_xref="GeneID:10265858" CDS complement(109262..109456) /locus_tag="AGROH133_02959" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277413.1" /db_xref="GI:325291549" /db_xref="GeneID:10265858" /translation="MKLTDNWEEEYCQSNRATLGGGVRRFDDLKIQDLRSKNRRFIAA QHCIKRIAISRHLEASWHAA" gene 109733..109942 /gene="cspA" /locus_tag="AGROH133_02961" /db_xref="GeneID:10265859" CDS 109733..109942 /gene="cspA" /locus_tag="AGROH133_02961" /note="'Cold-shock' DNA-binding domain; Cold shock proteins" /codon_start=1 /transl_table=11 /product="cold shock protein" /protein_id="YP_004277414.1" /db_xref="GI:325291550" /db_xref="GeneID:10265859" /translation="MATGTVKWFNATKGYGFIQPDDGSQDVFVHISAVERAGMTSLND GQKLSYELTQDRRSGKMSAGELVAS" misc_feature 109739..109903 /gene="cspA" /locus_tag="AGROH133_02961" /note="Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein...; Region: CSP_CDS; cd04458" /db_xref="CDD:88424" misc_feature order(109754..109756,109781..109783,109814..109816, 109901..109903) /gene="cspA" /locus_tag="AGROH133_02961" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:88424" misc_feature order(109772..109792,109811..109822) /gene="cspA" /locus_tag="AGROH133_02961" /note="RNA-binding motif; other site" /db_xref="CDD:88424" gene complement(110357..111763) /gene="dapE" /locus_tag="AGROH133_02962" /db_xref="GeneID:10265860" CDS complement(110357..111763) /gene="dapE" /locus_tag="AGROH133_02962" /note="Peptidase family M20/M25/M40; Acetylornithine deacetylase/Succinyl- diaminopimelate desuccinylase and related deacylases" /codon_start=1 /transl_table=11 /product="succinyl-diaminopimelate desuccinylase" /protein_id="YP_004277415.1" /db_xref="GI:325291551" /db_xref="GeneID:10265860" /translation="MTGSAMTDVSPILSTADDNLTSSLERLFELVRIPSISTDPAYKA ECRKAAEWLVRTLESLGFAASVRDTAGHPMVVAHHDAATKDAPHVLFYGHYDVQPVDP LNLWENDPFEPAVKDIGGGRQVITGRGTADDKGQLMTFVEACRAYKAVNGSLPVRVTI LFEGEEESGSPSLKPFLDANADELKADYALVCDTSMWDRDTPAIAAALRGLVGEEITI TAADRDLHSGLFGGAAANPIHILTDILAGLHDETGRVTLAGFYDGVEETPANIKASWE TLGRTAEAFLGEVGLSIPSGEKGRSVLEQTWARPTAEVNGIIGGYTGDGFKTVIAAKA SAKVSFRLVGEQDPKAVRESFRNYVRSKIPADCSVEFHEHGASPAIQLSYDSPVLTKA KNALSEEWPKPAVVIGMGGSIPIVGDFQKMLGMDSLLVGFGLTDDRIHSPNEKYDLQS FHKGIRSWIRILDALAAK" misc_feature complement(110360..111730) /gene="dapE" /locus_tag="AGROH133_02962" /note="Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]; Region: ArgE; COG0624" /db_xref="CDD:30969" misc_feature complement(110369..111694) /gene="dapE" /locus_tag="AGROH133_02962" /note="Uncharacterized M20 Dipeptidases; Region: M20_dipept_like_3; cd05680" /db_xref="CDD:193555" misc_feature complement(order(110444..110446,111185..111187, 111263..111268,111368..111370,111482..111484)) /gene="dapE" /locus_tag="AGROH133_02962" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193555" misc_feature complement(order(110438..110449,110531..110536, 110741..110743,110747..110749,110753..110755, 110774..110797,110810..110833,110846..110851, 110858..110860,110939..110941,111017..111019, 111026..111031,111038..111040,111044..111052, 111068..111088,111092..111109,111119..111121, 111125..111127,111137..111139)) /gene="dapE" /locus_tag="AGROH133_02962" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193555" gene complement(111988..112422) /locus_tag="AGROH133_02963" /db_xref="GeneID:10265861" CDS complement(111988..112422) /locus_tag="AGROH133_02963" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_004277416.1" /db_xref="GI:325291552" /db_xref="GeneID:10265861" /translation="MGFSRDESAIYLAAKMAREFTMALQKRAAALGFSPGQFPILIEL WHEEGLTQRQLLDRIDVEQATLANTLSRMERDGLIVRKSHPSDRRAQIIELTQRGRDL EANAIAASEATEDTLLADFRRFEKQLLLEYMRRAIDRAKKAK" misc_feature complement(112006..112350) /locus_tag="AGROH133_02963" /note="Transcriptional regulators [Transcription]; Region: MarR; COG1846" /db_xref="CDD:32031" misc_feature complement(112060..112338) /locus_tag="AGROH133_02963" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 112837..115824 /gene="polA" /locus_tag="AGROH133_02965" /db_xref="GeneID:10265862" CDS 112837..115824 /gene="polA" /locus_tag="AGROH133_02965" /EC_number="2.7.7.7" /note="has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I - 3'-5' exonuclease and polymerase domains" /codon_start=1 /transl_table=11 /product="DNA polymerase I" /protein_id="YP_004277417.1" /db_xref="GI:325291553" /db_xref="GeneID:10265862" /translation="MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNM LWKLLKDARNTDVGVTPTHFAVIFDYSSKTFRNELYDLYKANRTAPPEDLVPQFGLIR EATRAFNLPCIETEGFEADDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDA MKDKQIGVPDVVEKWGVAPEKMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLD TLLARAGEIKQQKRRENIIANADLARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLI AFLKAMEFTTLTRRVAEATDSDASAIEAANVPVQWGADAHGPDLDAAPAVAAADDKTA VPASTNAPARKVTGEGSAPTDLATARQTVFSAAKIDTTAYTTIRDLAELDRWVAAARE TGVVAFDTETTSLDPMQAELVGFSLAIADNGKDASGTDIRAAYVPLTHKTGSGGDLFS DGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRHGVVMQSFDDTMLI SYVLEAGKTTHGMDTLSERWLGHTPIAYKDVAGSGKSSITFDFVDIDKATAYAAEDAD VTLRLWMVLKPRLAAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQK AAAFEEEVYQLAGERFNIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQVLEDLAAE GAELPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYALASTTTGRLSSSEPNLQ NIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRSAFENGIDIHA MTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSEAGEYIKKYFE RFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPSMKAFNERAAINAPIQGS AADIIRRAMVRIEPVLEAEKLSARMLLQVHDELIFEVEEGEIEKTLPIVVSVMENAAM PAISMRVPLKVDARAADNWDEAH" misc_feature 112855..115821 /gene="polA" /locus_tag="AGROH133_02965" /note="DNA polymerase I; Region: pola; TIGR00593" /db_xref="CDD:161944" misc_feature 112855..113355 /gene="polA" /locus_tag="AGROH133_02965" /note="PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859" /db_xref="CDD:189029" misc_feature order(112867..112869,113041..113043,113191..113193, 113197..113202,113266..113268,113272..113274) /gene="polA" /locus_tag="AGROH133_02965" /note="active site" /db_xref="CDD:189029" misc_feature order(112867..112869,113197..113199,113266..113268) /gene="polA" /locus_tag="AGROH133_02965" /note="metal binding site 1 [ion binding]; metal-binding site" /db_xref="CDD:189029" misc_feature 113059..113097 /gene="polA" /locus_tag="AGROH133_02965" /note="putative 5' ssDNA interaction site; other site" /db_xref="CDD:189029" misc_feature order(113191..113193,113200..113202) /gene="polA" /locus_tag="AGROH133_02965" /note="metal binding site 3; metal-binding site" /db_xref="CDD:189029" misc_feature order(113266..113268,113272..113274) /gene="polA" /locus_tag="AGROH133_02965" /note="metal binding site 2 [ion binding]; metal-binding site" /db_xref="CDD:189029" misc_feature 113371..113592 /gene="polA" /locus_tag="AGROH133_02965" /note="H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898" /db_xref="CDD:188618" misc_feature order(113401..113424,113428..113457,113461..113472) /gene="polA" /locus_tag="AGROH133_02965" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:188618" misc_feature order(113407..113409,113416..113418) /gene="polA" /locus_tag="AGROH133_02965" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:188618" misc_feature 114004..114639 /gene="polA" /locus_tag="AGROH133_02965" /note="DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139" /db_xref="CDD:176651" misc_feature order(114031..114042,114049..114051,114283..114288, 114292..114300,114394..114399,114442..114447, 114514..114516,114526..114528) /gene="polA" /locus_tag="AGROH133_02965" /note="active site" /db_xref="CDD:176651" misc_feature order(114031..114033,114037..114039,114298..114300, 114514..114516,114526..114528) /gene="polA" /locus_tag="AGROH133_02965" /note="catalytic site [active]" /db_xref="CDD:176651" misc_feature order(114034..114042,114049..114051,114283..114288, 114292..114297,114394..114399,114442..114447, 114514..114516,114526..114528) /gene="polA" /locus_tag="AGROH133_02965" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176651" misc_feature 114664..115812 /gene="polA" /locus_tag="AGROH133_02965" /note="Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637" /db_xref="CDD:176474" misc_feature order(114916..114918,114928..114930,114937..114942, 115015..115023,115027..115029,115033..115044, 115138..115143,115225..115227,115285..115287, 115297..115299,115549..115551,115570..115572, 115663..115671) /gene="polA" /locus_tag="AGROH133_02965" /note="active site" /db_xref="CDD:176474" misc_feature order(114916..114918,114928..114930,114937..114942, 115015..115023,115027..115029,115033..115044, 115321..115323,115546..115551,115558..115560, 115570..115572,115663..115671) /gene="polA" /locus_tag="AGROH133_02965" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176474" misc_feature order(115138..115143,115147..115149,115225..115227, 115285..115287,115297..115299,115669..115671) /gene="polA" /locus_tag="AGROH133_02965" /note="catalytic site [active]" /db_xref="CDD:176474" gene 115910..116629 /locus_tag="AGROH133_02966" /db_xref="GeneID:10265863" CDS 115910..116629 /locus_tag="AGROH133_02966" /note="Domain of unknown function (DUF1868); Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277418.1" /db_xref="GI:325291554" /db_xref="GeneID:10265863" /translation="MHAPLVSKDLESFSAASHDQPPRHLGRRYNTDGEFLLEPGNTVV CHLVEGSKAESAIIGTRQRFLDMPEASQLAFTPVSSLHMTVFQGIIEYRRAFPYWPED MPLDTPIDTMTEYYCDRLADFPGLPGFNMQVTGLKPTGLVLKGATAEDDRIIALWRDT FAEAFGYRHPDHDTYQFHITLAYVTRWFDPECLPRWQAMLDEELEKLRAAAPIIDMRA PAFCEFRDMNHFRELVVFDRK" misc_feature 115910..116620 /locus_tag="AGROH133_02966" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5255" /db_xref="CDD:34852" misc_feature 115991..116335 /locus_tag="AGROH133_02966" /note="Domain of unknown function (DUF1868); Region: 2H-phosphodiest; pfam08975" /db_xref="CDD:192188" gene 116823..117008 /gene="rpmF" /locus_tag="AGROH133_02967" /db_xref="GeneID:10265864" CDS 116823..117008 /gene="rpmF" /locus_tag="AGROH133_02967" /note="some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Ribosomal protein L32" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L32" /protein_id="YP_004277419.1" /db_xref="GI:325291555" /db_xref="GeneID:10265864" /translation="MAVPKRKTSPSKRGMRRSADGLKASTYVEDKNSGELRRPHHIDL KTGMYRGRQVLTPKESA" misc_feature 116823..117005 /gene="rpmF" /locus_tag="AGROH133_02967" /note="Ribosomal L32p protein family; Region: Ribosomal_L32p; cl09115" /db_xref="CDD:195795" gene 117186..118997 /gene="dctB" /locus_tag="AGROH133_02968" /db_xref="GeneID:10265865" CDS 117186..118997 /gene="dctB" /locus_tag="AGROH133_02968" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase regulating C4-dicarboxylate transport system" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004277420.1" /db_xref="GI:325291556" /db_xref="GeneID:10265865" /translation="MLLTLLSLGLGYGAVTKGSGIIAESYFGEVSDQGRTTLRLAVSA LGGLLSRFEPLPALIADHDDIEELVAHPQDEAMRQRANIYLKSINTLLESSDIYIITL DGVTIAASNYDGPTSFVGENFSYRPYFQDAAKGFPSRFFALGTTSHKRGYYFSAPILF NEEIKGVIVFKVDIEGIEASFGDGENRILVSDPEGIIFMTGTPQWLYSGLMPLTPERL ARTAASRRYANADLKELPLKNGNFGSHQLMTISQNDGDREYLVLSQPMPDAGWTVSVL MDTGSLRTQVKTAMIAIILCLCLAAAVVAAMLQRRRRVRERLTHQAEAQAELERRVEE RTADLARVNREIEHEIAERRQTEKQLRKMQNDLVQAGKLAALGQMSAALSHEFNQPLA AAKNYAENASLLVERGRLEEVTENLRRISGLIDRMASISRHLRNFARKPNEKMAAVAL DAVLRDTLEIVGARLKAADAVLDVDLGPVPLAVKAGPVRLQQVLVNIISNAADAVEGR EDRRIALKAVLHGQTVSIFIRDRGPGVPPAISERIFDPFFTTKGVGRGLGLGLSITYN IIKDFGGQLRVRNHEDGGAEFEIELPAAAYRVEVAAE" misc_feature 117225..118970 /gene="dctB" /locus_tag="AGROH133_02968" /note="Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]; Region: COG4191" /db_xref="CDD:33926" misc_feature 118302..118502 /gene="dctB" /locus_tag="AGROH133_02968" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(118320..118322,118332..118334,118344..118346, 118353..118355,118365..118367,118374..118376, 118431..118433,118443..118445,118452..118454, 118464..118466,118473..118475,118485..118487) /gene="dctB" /locus_tag="AGROH133_02968" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 118338..118340 /gene="dctB" /locus_tag="AGROH133_02968" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 118653..118958 /gene="dctB" /locus_tag="AGROH133_02968" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(118671..118673,118683..118685,118692..118694, 118767..118769,118773..118775,118779..118781, 118785..118790,118857..118868,118914..118916, 118920..118922,118935..118940,118944..118946) /gene="dctB" /locus_tag="AGROH133_02968" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 118683..118685 /gene="dctB" /locus_tag="AGROH133_02968" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(118779..118781,118785..118787,118857..118859, 118863..118865) /gene="dctB" /locus_tag="AGROH133_02968" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 118994..120340 /gene="dctD" /locus_tag="AGROH133_02970" /db_xref="GeneID:10265866" CDS 118994..120340 /gene="dctD" /locus_tag="AGROH133_02970" /note="RNA polymerase sigma factor 54, interaction, Sigma-54 interaction domain; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004277421.1" /db_xref="GI:325291557" /db_xref="GeneID:10265866" /translation="MTMSRVLLIDDEEELRFSTAQALELSGFAVTMLASAEHALELIG YSFDGVVVSDIRMPGMDGMTLLQKVRELDPEIPVILMTGHGDVQLAVNAMRNGAYDFI EKPFTPQYLAGIIKRANDRRALVLENRRLKAVAGKHDDLETRLPGRTQVMVDLRYRIR AIGATDADTLIVGDTGAGKEVVARALHDISARANRPFVAINCAALPQTLIESELFGHE AGAFPGALRPRYGKFEHARGGTILLDEIGSMPFELQGRFLRVLQERVITRLGSNETVE LDVRFIATSKVDLEQEVAAGRFRADLLYRLNVATILVPSLSQRSADIPLLFLHLVREA AARYGREDMDVPQHLLSVISLREWPGNVRELRNAADRFVLGLESDVSETSLPFEGDGK AALAARVAAYEKSLIARAIAAHGGNLKSVYESLGISRKTLYEKMQKYELHRHMTEV" misc_feature 118994..120334 /gene="dctD" /locus_tag="AGROH133_02970" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 119012..119347 /gene="dctD" /locus_tag="AGROH133_02970" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(119021..119026,119153..119155,119177..119179, 119237..119239,119294..119296,119303..119308) /gene="dctD" /locus_tag="AGROH133_02970" /note="active site" /db_xref="CDD:29071" misc_feature 119153..119155 /gene="dctD" /locus_tag="AGROH133_02970" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(119162..119167,119171..119179) /gene="dctD" /locus_tag="AGROH133_02970" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 119303..119311 /gene="dctD" /locus_tag="AGROH133_02970" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 119501..119914 /gene="dctD" /locus_tag="AGROH133_02970" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 119510..119533 /gene="dctD" /locus_tag="AGROH133_02970" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(119513..119536,119723..119725,119849..119851) /gene="dctD" /locus_tag="AGROH133_02970" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 119711..119728 /gene="dctD" /locus_tag="AGROH133_02970" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 119906..119908 /gene="dctD" /locus_tag="AGROH133_02970" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 120185..120310 /gene="dctD" /locus_tag="AGROH133_02970" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene 120358..121521 /locus_tag="AGROH133_02972" /db_xref="GeneID:10265867" CDS 120358..121521 /locus_tag="AGROH133_02972" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277422.1" /db_xref="GI:325291558" /db_xref="GeneID:10265867" /translation="MDEPVWVEIHPLLPMMAIKARLAARPPLLNGNPGSQMAHPGRHG GACAAEVANIFIREESMKILKTVTGLAAAAAVSLFALSASAQNYPERNITMVVPFAAG GPTDTVARLVAESMSKDLGQQIIVENVGGAGGTLGAGRVAASDPDGYTVLLHHIGMAT SATLYRKLAYDTLNAFEYVGLVTEVPMTILSRKTLETKDLKGLIDYAKANKDKVTVAN AGIGAASHLCGMLFMSAIETPLVTVPYKGTGPAMTDLLGGQVDIMCDQTTNTTKQIQG GTVKAYAVTSAKRLDVLPDVPTVAESGLPKLEVGIWHGIYTPKGTPAEINEKLSKSLQ VALKDKNVAARFAELGTTPSPEADATPAALKTKLESEIARWKPVIEGAGQYAD" misc_feature 120613..121515 /locus_tag="AGROH133_02972" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 120679..121506 /locus_tag="AGROH133_02972" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 121622..122083 /locus_tag="AGROH133_02973" /db_xref="GeneID:10265868" CDS 121622..122083 /locus_tag="AGROH133_02973" /note="Protein of unknown function DUF1468" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277423.1" /db_xref="GI:325291559" /db_xref="GeneID:10265868" /translation="MKSFFIDPAEAACGAIFIGFGAFFALQSFGLDIGTAFRMGPGYF PLVLAIVLILLGAVIFIRATRVQGDALGAIAWRGIFFILPAPIFFGFTVRGLGFVPAL FFSALIAAFASHKMSPLMAVIISAAITVFSVAVFNYGLGLPFQRFGPWLKF" misc_feature 121697..122053 /locus_tag="AGROH133_02973" /note="Tripartite tricarboxylate transporter TctB family; Region: TctB; pfam07331" /db_xref="CDD:191726" gene 122093..123598 /locus_tag="AGROH133_02979" /db_xref="GeneID:10265869" CDS 122093..123598 /locus_tag="AGROH133_02979" /note="Protein of unknown function DUF112, transmembrane; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277424.1" /db_xref="GI:325291560" /db_xref="GeneID:10265869" /translation="MELLDNLALGFVTATSLANLFFCLIGVLLGTLIGVLPGIGATAT IAMLLPITFQLEPVSSLIMLAGIYYGAQYGGSTTAILINMPGESSSAVTAIDGYQMAR KGKAGAALAIAAIGSFFAGTVSTFLVAVFAPPLTAIALEFGAAEYFSLMVVGLVSSIA LAHGSIVKALAMVVLGLLLGLVGTDIYSGAPRFTLGIREYADGLNFVAVAVGVFGIAE ILRNLENERTRSVLIAKVSSLMPSKEDFKAMVGPVLRGTVIGSALGILPGGGAILAAF ASYTVEKRVSKHPEEFGHGAVAGVAGPESANNAGAQTSFIPLLTLGIPANPVMALMIG AMIIQGIVPGPNVATEQPALFWGIIASMWIGNLMLVILNLPLIGLWVKLLTVPYYVLF PIIMAFCAIGVYSVNSNVFDLYAVAFFGFIGYVLVKLRCEPAPLLLGFVLGPLLEENL RRAMILSRGDPTTFVTRPISATLLFIALAVLIIVFLPSVKKKREEVFVEED" misc_feature 122093..123508 /locus_tag="AGROH133_02979" /note="Tripartite tricarboxylate transporter TctA family; Region: TctA; cl00772" /db_xref="CDD:153985" gene 123752..123964 /locus_tag="AGROH133_02993" /db_xref="GeneID:10265870" CDS 123752..123964 /locus_tag="AGROH133_02993" /note="SlyX" /codon_start=1 /transl_table=11 /product="SlyX protein" /protein_id="YP_004277425.1" /db_xref="GI:325291561" /db_xref="GeneID:10265870" /translation="MTSETEKRIIALEETIAHQAKTIEELSDQLTEQWKVVEQTRAKL DRLTERFLSLEEQSLDAPAITRPPHY" misc_feature 123758..123961 /locus_tag="AGROH133_02993" /note="SlyX; Region: SlyX; cl01090" /db_xref="CDD:186326" gene 123978..124529 /locus_tag="AGROH133_02994" /db_xref="GeneID:10265871" CDS 123978..124529 /locus_tag="AGROH133_02994" /note="Protein of unknown function DUF924, bacterial; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277426.1" /db_xref="GI:325291562" /db_xref="GeneID:10265871" /translation="MRSDTAALAAEIVDFWKQAGPEKWFDKDAAFDDHFHDRFRDAHF AAARRELDGWLDGAESSLALMLLLDQFPRNCFRETAHMYATDPLARMFASEAIRRGHD QAVTEDLRVFFYLPFSHSESIEDQERACTLNRPLGGLYLHHAEEHRDIVARFGRFPHR NDILLRETTPEERQYLDAGGFTG" misc_feature 124011..124520 /locus_tag="AGROH133_02994" /note="Bacterial protein of unknown function (DUF924); Region: DUF924; cl01561" /db_xref="CDD:194164" gene complement(124597..125730) /gene="dnaJ" /locus_tag="AGROH133_02995" /db_xref="GeneID:10265872" CDS complement(124597..125730) /gene="dnaJ" /locus_tag="AGROH133_02995" /note="DnaJ C terminal region; DnaJ-class molecular chaperone with C-terminal Zn finger domain" /codon_start=1 /transl_table=11 /product="DnaJ family molecular chaperone" /protein_id="YP_004277427.1" /db_xref="GI:325291563" /db_xref="GeneID:10265872" /translation="MAKADFYETLGVSKTADEKELKSAFRKLAMKYHPDKNPDDADSE RKFKEINEAYETLKDPQKRAAYDRFGHAAFENGGMGGGGMGGGGFANGGFSDIFEDIF GEMMGGGRARRSSGGRERGADLRYNMEITLEEAFAGKTAQIRVPTSITCDVCSGSGAK PGTQPKTCGTCQGSGRVRAAQGFFSVERTCPTCHGRGQTISDPCSKCHGQGRVTEERS LSVNIPSGIEDGTRIRLQGEGEAGMRGGPAGDLYIFLSVRPHEFFQRDGADLYCTVPI SMTTAALGGTFDVTTLDGTKSRVTVPEGTQPGKQFRLKGKGMPVLRSAQTGDLYIQIQ IETPQKLSKRQRELLQEFEQLSSQENNPESTGFFARMKEFFDG" misc_feature complement(124603..125730) /gene="dnaJ" /locus_tag="AGROH133_02995" /note="chaperone protein DnaJ; Provisional; Region: PRK10767" /db_xref="CDD:182712" misc_feature complement(125554..125718) /gene="dnaJ" /locus_tag="AGROH133_02995" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cd06257" /db_xref="CDD:99751" misc_feature complement(order(125575..125580,125587..125592, 125599..125601,125626..125634)) /gene="dnaJ" /locus_tag="AGROH133_02995" /note="HSP70 interaction site [polypeptide binding]; other site" /db_xref="CDD:99751" misc_feature complement(125098..125280) /gene="dnaJ" /locus_tag="AGROH133_02995" /note="DnaJ central domain; Region: DnaJ_CXXCXGXG; cl14908" /db_xref="CDD:196869" misc_feature complement(124960..>125088) /gene="dnaJ" /locus_tag="AGROH133_02995" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" misc_feature complement(124687..124926) /gene="dnaJ" /locus_tag="AGROH133_02995" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" gene complement(125821..127722) /gene="dnaK" /locus_tag="AGROH133_02996" /db_xref="GeneID:10265873" CDS complement(125821..127722) /gene="dnaK" /locus_tag="AGROH133_02996" /EC_number="3.6.1.-" /note="heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; Molecular chaperone" /codon_start=1 /transl_table=11 /product="molecular chaperone DnaK" /protein_id="YP_004277428.1" /db_xref="GI:325291564" /db_xref="GeneID:10265873" /translation="MAKVIGIDLGTTNSCVAVMDGKDTKVIENAEGARTTPSMVAFSD DGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKALVPFEIVKGDNGDAW VKAQDKNYSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGRI AGLDVLRIINEPTAAALAYGLDKKDGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNG DTFLGGEDFDMRLVEYLAGEFKKDQGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEI NLPFITADASGPKHLTLKLTRAKFESLVDDLVQRTVAPCKAALKDAGVTAAEIDEVVL VGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVAMGAAIQAGVLQGDVKDVLLLDVTPL SLGIETLGGVFTRLIDRNTTIPTKKSQTFSTAEDSQSAVTIRVSQGEREMAQDNKLLG QFDLVGLPPAPRGVPQIEVTFDIDANGIVQVSAKDKGTGKEQQIRIQASGGLSDADIE KMVKDAEANAEADKKRRAGVEAKNQAESLVHSTEKSVKEYGDKVSETDRKAIEDAIAS LKTAVEASEPDADDIQAKTQTLMEVSMKLGQAIYEAQQAEAGANGEGGKDDVVDADYE EIKDDKKSA" misc_feature complement(125833..127722) /gene="dnaK" /locus_tag="AGROH133_02996" /note="molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290" /db_xref="CDD:178963" gene 127787..127888 /locus_tag="AGROH133_02997" /db_xref="GeneID:10265874" CDS 127787..127888 /locus_tag="AGROH133_02997" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277429.1" /db_xref="GI:325291565" /db_xref="GeneID:10265874" /translation="MDLQYSLLLCGVYKERFFLLQGAREGEALQKSG" gene complement(128010..128099) /locus_tag="AGROH133_02998" /db_xref="GeneID:10265875" tRNA complement(128010..128099) /locus_tag="AGROH133_02998" /product="tRNA-Ser" /db_xref="GeneID:10265875" gene 128320..128637 /locus_tag="AGROH133_02999" /db_xref="GeneID:10265876" CDS 128320..128637 /locus_tag="AGROH133_02999" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277430.1" /db_xref="GI:325291566" /db_xref="GeneID:10265876" /translation="MKAFLRFLSFLLLIAAVFLGVLDSIRSVSTSSVNITGILSVWNY LLPASRTMVETALAHYIHPEAWRFIENALSGLPAFAFFLALSLLCWMAGYRKRKVMRR SSV" gene 128715..129365 /gene="msrA" /locus_tag="AGROH133_03003" /db_xref="GeneID:10265877" CDS 128715..129365 /gene="msrA" /locus_tag="AGROH133_03003" /EC_number="1.8.4.11" /note="this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; Peptide methionine sulfoxide reductase" /codon_start=1 /transl_table=11 /product="methionine sulfoxide reductase A" /protein_id="YP_004277431.1" /db_xref="GI:325291567" /db_xref="GeneID:10265877" /translation="MFLFDTLSKKTTMPTEETALPGREEALAVPETHFVNGRPLKGPY PDGLEIIYLGMGCFWGAERLFWQTPGVWVTAVGYAGGFTRNPTYQETTTGQTGHAEVV KVIYDPAVISLSGLFKIFFEEHDPTQGMRQGNDVGTTYRSAIYANTEGQLQQAQKARD TFQQALDEAGHGRAITTEIGPLETFYYAEDYHQQYLAKNPGGYCGLRGTGVSCNIG" misc_feature 128724..129362 /gene="msrA" /locus_tag="AGROH133_03003" /note="Peptide methionine sulfoxide reductase; Region: PMSR; cl00366" /db_xref="CDD:185944" gene 129580..130572 /locus_tag="AGROH133_03004" /db_xref="GeneID:10265878" CDS 129580..130572 /locus_tag="AGROH133_03004" /note="Basic membrane lipoprotein; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein" /codon_start=1 /transl_table=11 /product="membrane lipoprotein" /protein_id="YP_004277432.1" /db_xref="GI:325291568" /db_xref="GeneID:10265878" /translation="MKKSLLTLFALAAMSASALAADIKPALVYGTGGKFDKSFNEAAA AGAEKFKAETGIEFRDFEPTSDTQGEQAIRNFASKGFNPVVAVSFAWTSAMEKVAAEF PDTKFVIVDSVVELPNVRSVVYKEHEGSYLVGLLAGMASKTGKVGFIGGMDIPLIRKF ACGYAQGAKAANDKIEVFQNMTGTTGAAWNDPVRGGELTKNQIDQGADVIYAAAGATG IGVLQTAADNKKFSIGVDSNQNHLHPGSVLTSMVKRVDLAVYNAYKDAKDDKFTPGIV ALGVKEDGVAYALDDNNKALITPEMTAAVDKAKADIIAGTIKVHDYMADNSCPK" misc_feature 129643..130569 /locus_tag="AGROH133_03004" /note="Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]; Region: Med; COG1744" /db_xref="CDD:31930" misc_feature 129649..130440 /locus_tag="AGROH133_03004" /note="Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea; Region: PBP1_BmpA_PnrA_like; cd06354" /db_xref="CDD:107349" misc_feature order(129667..129672,129697..129699,129910..129912, 130048..130050,130144..130146,130222..130224, 130285..130287,130336..130338) /locus_tag="AGROH133_03004" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107349" gene 130656..132161 /locus_tag="AGROH133_03006" /db_xref="GeneID:10265879" CDS 130656..132161 /locus_tag="AGROH133_03006" /note="ABC transporter nucleotide-binding protein/ATPase (sugar/ribonucleotide); ABC-type uncharacterized transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="sugar/ribonucleotide ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277433.1" /db_xref="GI:325291569" /db_xref="GeneID:10265879" /translation="MDPAIELVGIDKKFGAVHANKNINLTVAKGTIHGIIGENGAGKS TLMSILYGFYQADAGEIRVNGAPVSIRDSQAAISAGIGMVHQHFMLVENFTVLENVML GAEGGASLAKGRAAARKELKRLEDDYGLEVDPDAVIEELPVGLQQRVEILKAMYRGAE ILILDEPTGVLTPAEADHLFKILGVLREQGKTVILITHKLREIMAITDSVSVMRRGEM VATRKTSETSVEELAELMVGRRVLLRVEKGETTPGEVLLSIRNLTVKDSRGVTMVDDV SLDVRAGEIVGIAGVAGNGQSELLEAIAGIRKPYSGEIWVAGQKVDRPDPSILRELGL AHIPEDRHHMGLVLKFEEYENSILGYHHDERYGKGPFLNPEAIRKDAVEKIEKYDIRP PNPQLKTANFSGGNQQKIVVAREIERDPKMLIIGQPTRGVDIGAIEFIHRRIIEMRDA GKAILLVSVELDEIRSLSDRIMVMFAGRVVGEKTAEAEEQTLGLMMAGIAA" misc_feature 130656..132149 /locus_tag="AGROH133_03006" /note="ABC-type uncharacterized transport systems, ATPase components [General function prediction only]; Region: COG3845" /db_xref="CDD:33636" misc_feature 130668..131318 /locus_tag="AGROH133_03006" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 130764..130787 /locus_tag="AGROH133_03006" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(130773..130778,130782..130790,130911..130913, 131148..131153,131247..131249) /locus_tag="AGROH133_03006" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 130902..130913 /locus_tag="AGROH133_03006" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 131076..131105 /locus_tag="AGROH133_03006" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 131136..131153 /locus_tag="AGROH133_03006" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 131160..131171 /locus_tag="AGROH133_03006" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 131235..131255 /locus_tag="AGROH133_03006" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature 131412..132092 /locus_tag="AGROH133_03006" /note="This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (; Region: ABC_Carb_Monos_II; cd03215" /db_xref="CDD:72974" gene 132169..133272 /locus_tag="AGROH133_03007" /db_xref="GeneID:10265880" CDS 132169..133272 /locus_tag="AGROH133_03007" /note="ABC transporter transmembrane protein (sugar/ribonucleotide); ABC-type uncharacterized transport system, permease component" /codon_start=1 /transl_table=11 /product="sugar/ribonucleotide ABC transporter transmembrane protein" /protein_id="YP_004277434.1" /db_xref="GI:325291570" /db_xref="GeneID:10265880" /translation="MSTASVPLPNWITYGLLPFLNVVTAFLISGLVVWSIGENPLAAL RLLIEGALGRGDAIGFTLFYTTSFIFTGLSVAVAFHAGLFNIGSEGQAYIGGLGAALV ALALDRYVPWYVTMPFAIIGAAVFGAAWAFIPAWLQAKRGSHVVITTIMFNFIAAALM VYLLVNVLIVPGKMAPETRTFLPGGQLPKLDWLMALFGLKLGPAPFNVSFIIALVMCF LVWVLIWRTKLGYEMRTLGVSPSAAVYAGIPYARTVIIAMLISGGLAGMMALNPVMGA SARLQVEFVGGAGFVGIAVSLMGRSHPLGILFSALLFGILYQGGADLSFEMPNITREM IVVIQGLVILFAGALEYMYRPAIVRIYQRLAKG" misc_feature 132361..133206 /locus_tag="AGROH133_03007" /note="Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (; Region: TM_PBP1_transp_TpRbsC_like; cd06580" /db_xref="CDD:119322" misc_feature 132889..132945 /locus_tag="AGROH133_03007" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119322" gene 133279..134250 /locus_tag="AGROH133_03017" /db_xref="GeneID:10265881" CDS 133279..134250 /locus_tag="AGROH133_03017" /note="ABC transporter transmembrane protein (sugar/ribonucleotide); Uncharacterized ABC-type transport system, permease component" /codon_start=1 /transl_table=11 /product="sugar/ribonucleotide ABC transporter transmembrane protein" /protein_id="YP_004277435.1" /db_xref="GI:325291571" /db_xref="GeneID:10265881" /translation="MDFFDMLVSILGSTVRLTIPLLFTALAGLFSERAGVFDIGLEGK MLAAAFASACVAYLTANPWAGLLAGIAVSILFSLIHGFAVITNRGNQIVSGVALNFIA AGLTVVLGQAWFGQGGRTPQLPGEGRFAPIILPGADAMREVPFIGPLYANVISGNNIL TYLAFLAVPLSWWVLYRTRFGLRLRAVGENPGAVDTAGISVTWMRYRAVIVAGFLCGF SGAYLAVAQSAAFIANMSAGKGYIALAALIFAKWKPVPVMFACLLFGFLDAFANFMQG KSVPGIGEVPVQIFQAMPYILTCILLAGFIGVAKPPKAGGVAYAKER" misc_feature 133330..134184 /locus_tag="AGROH133_03017" /note="Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (; Region: TM_PBP1_transp_TpRbsC_like; cd06580" /db_xref="CDD:119322" misc_feature 133852..133908 /locus_tag="AGROH133_03017" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119322" gene 134255..134659 /gene="cdd" /locus_tag="AGROH133_03025" /db_xref="GeneID:10265882" CDS 134255..134659 /gene="cdd" /locus_tag="AGROH133_03025" /EC_number="3.5.4.5" /note="Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis" /codon_start=1 /transl_table=11 /product="Cytidine deaminase" /protein_id="YP_004277436.1" /db_xref="GI:325291572" /db_xref="GeneID:10265882" /translation="MSREPMSHQLFEAAVEAMAFAHAPYSKFPVGAAIRAEDGKIYKG ANIENLSFPQGWCAEPSAISAMIMGGAKKISEIAVIAEKLALCPPCGGCRQKIAEFAS PDTKVYLCDETGVQKVMTMDELLPFSFKTELP" misc_feature 134324..134620 /gene="cdd" /locus_tag="AGROH133_03025" /note="Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...; Region: cytidine_deaminase; cd01283" /db_xref="CDD:29826" misc_feature order(134336..134338,134342..134344,134390..134392, 134396..134398,134423..134431,134522..134524, 134531..134533) /gene="cdd" /locus_tag="AGROH133_03025" /note="active site" /db_xref="CDD:29826" misc_feature order(134423..134431,134519..134524,134531..134533) /gene="cdd" /locus_tag="AGROH133_03025" /note="catalytic motif [active]" /db_xref="CDD:29826" misc_feature order(134423..134425,134429..134431,134522..134524, 134531..134533) /gene="cdd" /locus_tag="AGROH133_03025" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:29826" gene 134659..135459 /gene="deoD" /locus_tag="AGROH133_03026" /db_xref="GeneID:10265883" CDS 134659..135459 /gene="deoD" /locus_tag="AGROH133_03026" /EC_number="2.4.2.1" /note="catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation" /codon_start=1 /transl_table=11 /product="Purine nucleoside phosphorylase" /protein_id="YP_004277437.1" /db_xref="GI:325291573" /db_xref="GeneID:10265883" /translation="MPDTLIDILVERLNGLMPRIAIVLGSGLGSLVDEVSDAIRVPYT ELPGFPASGVSGHAGELVAGYLGGEPVMMLSGRVHYYEKGDPAAMRAVIEALAGLGVQ SLILTNSAGSVRQDIPPGSVMQITDHINYSGMNPLIGEESDNRFVGMTTAYDPDLMLA MRNAAIRATVPLFGGVYMWFSGPSFETPAEIRMARLLGADAVGMSTVPEVILARFFGM RVAAASVITNYGAGMTGAELSHEETKDMAPVGGKRLAAILKEMIAGGA" misc_feature 134674..135450 /gene="deoD" /locus_tag="AGROH133_03026" /note="Phosphorylase superfamily; Region: PNP_UDP_1; cl00303" /db_xref="CDD:193757" gene 135462..136235 /gene="deoC" /locus_tag="AGROH133_03027" /db_xref="GeneID:10265884" CDS 135462..136235 /gene="deoC" /locus_tag="AGROH133_03027" /EC_number="4.1.2.4" /note="catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate" /codon_start=1 /transl_table=11 /product="Deoxyribose-phosphate aldolase" /protein_id="YP_004277438.1" /db_xref="GI:325291574" /db_xref="GeneID:10265884" /translation="MELQRPREAAALTLSLLDLTNLKEDCTPEQIAALCQRAHTEYGN TAAICIWPRFVAQARAAFGKDHAIRIATVVNFPSGDLDVATVVAETEAAIRDGADEID LVIPYRKFIAGDETAVSEMVAAVRKVCVAPVLLKVILETGELKDKALIRRASELAIAE GADFIKTSTGKVAINATLEAADIMLQAIRDSRQKVGFKPAGGVGTVEDATLYLRLAET IMAPDWAMPSTFRFGASGVLDDVLNVLAGGEPAKAASGY" misc_feature 135528..136166 /gene="deoC" /locus_tag="AGROH133_03027" /note="2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family; Region: DeoC; cd00959" /db_xref="CDD:188646" misc_feature order(135531..135533,135537..135539,135615..135623, 135687..135689,135711..135713,135726..135728, 135741..135752,135777..135779,135783..135785, 135840..135845,135888..135890) /gene="deoC" /locus_tag="AGROH133_03027" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:188646" misc_feature order(135957..135959,135966..135968,136059..136067, 136158..136166) /gene="deoC" /locus_tag="AGROH133_03027" /note="active site" /db_xref="CDD:188646" misc_feature 135957..135959 /gene="deoC" /locus_tag="AGROH133_03027" /note="catalytic residue [active]" /db_xref="CDD:188646" gene 136238..137548 /gene="deoA" /locus_tag="AGROH133_03028" /db_xref="GeneID:10265885" CDS 136238..137548 /gene="deoA" /locus_tag="AGROH133_03028" /EC_number="2.4.2.4" /note="Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate" /codon_start=1 /transl_table=11 /product="Thymidine phosphorylase" /protein_id="YP_004277439.1" /db_xref="GI:325291575" /db_xref="GeneID:10265885" /translation="MIPQEIIRRKRDGLSLAPQEIAAFIEALSKDGISEGQAAAFAMA VFFRGMNRDEMVALTLAMRDSGDVLSWNDIGRPVADKHSTGGVGDNVSLMLAPIVAAC GLAVPMISGRGLGHTGGTLDKLEAIPGYDVMPDEALFRRTVKTVGCAIIGQTGDLAPA DKRLYAIRDVTATVDSIPLITASILSKKLAAGLQTLVLDVKVGNGAFMQSVEDARNLA VALVDVANGAGLPTTALITDMNQPLGDAAGNAVEIVNCLDFLAGRKAGTRLEKVVLAF AAEMLVQAGSAATLDEGEALAEAALSSGRAMEVFAKMVAALGGPADFVDHPSRYLPSA PVILPVSAERSGWLASCATRDLGMVVVELGGGRRMPSDKIDPSVGISDILPLGTKVEK GEPIACVHAASKQEAELAVKRITACYGVADTAMETSTVVLERIT" misc_feature 136238..137542 /gene="deoA" /locus_tag="AGROH133_03028" /note="thymidine phosphorylase; Region: T_phosphoryl; TIGR02643" /db_xref="CDD:131691" misc_feature 136247..136438 /gene="deoA" /locus_tag="AGROH133_03028" /note="Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885" /db_xref="CDD:145834" misc_feature 136466..>136993 /gene="deoA" /locus_tag="AGROH133_03028" /note="Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591" /db_xref="CDD:144256" misc_feature 137276..137500 /gene="deoA" /locus_tag="AGROH133_03028" /note="Pyrimidine nucleoside phosphorylase C-terminal domain; Region: PYNP_C; pfam07831" /db_xref="CDD:116444" gene complement(137541..138062) /locus_tag="AGROH133_03029" /db_xref="GeneID:10265886" CDS complement(137541..138062) /locus_tag="AGROH133_03029" /note="Conserved hypothetical protein CHP02281; Predicted aspartyl protease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277440.1" /db_xref="GI:325291576" /db_xref="GeneID:10265886" /translation="MLARTIFLLIGLSVSATQIPALVEKFQPRPEAKVEKAEVKSEAV KPEPVSLGGVNLKADARGHFNAAFRINGKSFDGLVDTGASMVAINETIARRLGFGVNS LDFKYPISTANGQTMAAYLKLDRVEIGTIRVQNVDAMVLKDNALSNMLVGMSFLKQLS SFKVSGGEMRLVR" misc_feature complement(137592..137879) /locus_tag="AGROH133_03029" /note="Bacterial aspartate proteases, retropepsin-like protease family; Region: retropepsin_like_bacteria; cd05483" /db_xref="CDD:133150" misc_feature complement(137817..137825) /locus_tag="AGROH133_03029" /note="catalytic motif [active]" /db_xref="CDD:133150" misc_feature complement(137823..137825) /locus_tag="AGROH133_03029" /note="Catalytic residue [active]" /db_xref="CDD:133150" gene complement(138197..138826) /gene="upp" /locus_tag="AGROH133_03030" /db_xref="GeneID:10265887" CDS complement(138197..138826) /gene="upp" /locus_tag="AGROH133_03030" /EC_number="2.4.2.9" /note="Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate" /codon_start=1 /transl_table=11 /product="Uracil phosphoribosyltransferase" /protein_id="YP_004277441.1" /db_xref="GI:325291577" /db_xref="GeneID:10265887" /translation="MDGVTVIEHPLVRHKLTIMRKKETSTAGFRRLLREISTLLCYEV TRDLEMTMETIDTPLETIEAPVLEGKKLVFASILRAGNGLLEGMLELVPSARVAHIGV YRDHDTLEAVEYYFKAPESLDARLIIVVDPMLATGNSSIAAVEKLKERGAKNIRFLCL LAAPEGIKNFREAHPDVPIYTAAIDKQLNEKGYIVPGLGDAGDRMYGTK" misc_feature complement(138200..138826) /gene="upp" /locus_tag="AGROH133_03030" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene complement(138923..139900) /gene="add" /locus_tag="AGROH133_03031" /db_xref="GeneID:10265888" CDS complement(138923..139900) /gene="add" /locus_tag="AGROH133_03031" /EC_number="3.5.4.4" /note="catalyzes the formation of inosine from adenosine" /codon_start=1 /transl_table=11 /product="Adenosine deaminase" /protein_id="YP_004277442.1" /db_xref="GI:325291578" /db_xref="GeneID:10265888" /translation="MTSHLLKAEIHCHLEGAAPPALVAKQAEKYGIDTSSFLRDGQYV WSDFAQFIQCYDAVAQVFKTDEDYAVLTQTYLTELAEANTIYSELIISPDHGDRIGLG ADAYLSGIAEGIRIAKEKTGIETRIIVTGERHFGPERVIAAAEYAARTKHPLVTGFNM AGEERMGRVADYARAFDIARDAGLGLTIHAGEVCGPESVVDALDLVKPSRIGHGVRAI EDAALVARLVEAGTVLEVCPGSNIALNVYPDFGSHPLRALRDAGVRVCISSDDPPFFF TSLAREYALAADAFGFSDAEINRMTRTALESAFVDEVTRARLLAKLDSH" misc_feature complement(138935..139891) /gene="add" /locus_tag="AGROH133_03031" /note="Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in...; Region: ADA; cd01320" /db_xref="CDD:30063" misc_feature complement(order(139088..139093,139262..139264, 139325..139327,139334..139336,139862..139864, 139868..139870)) /gene="add" /locus_tag="AGROH133_03031" /note="active site" /db_xref="CDD:30063" misc_feature complement(order(139088..139093,139325..139327, 139415..139417,139856..139858,139862..139864)) /gene="add" /locus_tag="AGROH133_03031" /note="purine riboside binding site [chemical binding]; other site" /db_xref="CDD:30063" gene complement(139897..141117) /gene="deoB" /locus_tag="AGROH133_03032" /db_xref="GeneID:10265889" CDS complement(139897..141117) /gene="deoB" /locus_tag="AGROH133_03032" /EC_number="5.4.2.7" /note="catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose" /codon_start=1 /transl_table=11 /product="Phosphopentomutase" /protein_id="YP_004277443.1" /db_xref="GI:325291579" /db_xref="GeneID:10265889" /translation="MARAFLLVLDSFGVGGAPDAEHYGDLGANTLGHIAEFCAAGAAD RPGLRAGPLKLPNMSSLGLLEIARQASGDIPAGMEPPERIFGLHGSASEISKGKDTPS GHWEIAGTPVTFDWGYFPTEGDAFSPELVEAICTQADIPGILGNCHASGTEIIATFGE EHIRSGKPICYTSSDSVFQIAAHETHFGLQRLVTICETVRKLLDPLNIGRVIARPFIG ETVATFERTGNRRDFSVPPPESTLLDRLVEAGRKVHAIGKIGDIYAHKGVSRVIKANG NSALMDATLHAIDEAENGDLVFTNFVDFDMLYGHRRDVAGYAAALEAFDARIPEIHRK MAPGDIAILTADHGCDPTWRGTDHTRERVPIMAFGPGIRSRDVGIRSSYADIGESIAH HLGIEAGSHGRSFI" misc_feature complement(139900..141117) /gene="deoB" /locus_tag="AGROH133_03032" /note="Sulfatase; Region: Sulfatase; cl10460" /db_xref="CDD:195965" misc_feature complement(139903..141114) /gene="deoB" /locus_tag="AGROH133_03032" /note="Metalloenzyme superfamily; Region: Metalloenzyme; pfam01676" /db_xref="CDD:145035" gene complement(141232..142002) /gene="surF" /locus_tag="AGROH133_03033" /db_xref="GeneID:10265890" CDS complement(141232..142002) /gene="surF" /locus_tag="AGROH133_03033" /note="Surfeit locus 1; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="surfeit 1" /protein_id="YP_004277444.1" /db_xref="GI:325291580" /db_xref="GeneID:10265890" /translation="MTDPSTTAPHTRRVRPAAIVVLLLTIVLTGFLLALGTWQVQRLF WKLDLIERVEARAHAAPVDAPAAREWPALADPAEYEYRRVKLSGTFLNDKEVQVYTVS DLGPGYWVMTPLRRDDGSNIIVNRGFVPSDKRDPSSRREGEPTGQVEIVGLMRAPETG GLFLRTNDPENRRWYSRNIPQISQASGLSGVAPFYVDADATPNPGGLPVGGKTMLTFP NNHLSYAITWYILAAMVIAAGWYVLRNLNAPKSKREED" misc_feature complement(141292..141897) /gene="surF" /locus_tag="AGROH133_03033" /note="SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring...; Region: SURF1; cd06662" /db_xref="CDD:119401" gene complement(142190..142585) /gene="cyoD" /locus_tag="AGROH133_03036" /db_xref="GeneID:10265891" CDS complement(142190..142585) /gene="cyoD" /locus_tag="AGROH133_03036" /EC_number="1.10.3.-" /note="Heme/copper-type cytochrome/quinol oxidase, subunit 4" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit IV" /protein_id="YP_004277445.1" /db_xref="GI:325291581" /db_xref="GeneID:10265891" /translation="MSSEAHAHHDAHGDDHHHHDGASHGTFKSYMIGFVMSVILTAIP FWLVMGDVLENKTLLVIAIMGLGVIQIFVHMIYFLHMDTKSEGGWTFMALIFTVVVLL ITLSGSLWVMYNMNKNMMPLHIEDVKNLP" misc_feature complement(142226..142510) /gene="cyoD" /locus_tag="AGROH133_03036" /note="Prokaryotic Cytochrome C oxidase subunit IV; Region: COX4_pro; cl01204" /db_xref="CDD:194066" gene complement(142585..143211) /gene="cyoC" /locus_tag="AGROH133_03040" /db_xref="GeneID:10265892" CDS complement(142585..143211) /gene="cyoC" /locus_tag="AGROH133_03040" /EC_number="1.10.3.-" /note="CyoC: cytochrome o ubiquinol oxidase, subunit III; Heme/copper-type cytochrome/quinol oxidase, subunit 3" /codon_start=1 /transl_table=11 /product="cytochrome ubiquinol oxidase subunit III" /protein_id="YP_004277446.1" /db_xref="GI:325291582" /db_xref="GeneID:10265892" /translation="MAHTPAQSAAGAETPVFYLKEDHHPENGTSLGFWLYLMSDCLIF ATLFATYAVVGRNYAAGPSGADLFDLKLVAINTAFLLFSSITYGFAMLEMEKQKVKTT LIWLGITGLFGLAFLAVELYEFHHLIEEGAGPQRSAFLSAFFALVGTHGLHVTFGVIW LVTLMFQVAKHGLIAANKRRLMCLSMFWHFLDVIWIGVFSFVYLMGVL" misc_feature complement(142594..143151) /gene="cyoC" /locus_tag="AGROH133_03040" /note="Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously...; Region: Ubiquinol_oxidase_III; cd02863" /db_xref="CDD:29487" misc_feature complement(order(143062..143064,143071..143076, 143083..143088,143107..143109,143116..143118, 143128..143133)) /gene="cyoC" /locus_tag="AGROH133_03040" /note="Subunit I/III interface [polypeptide binding]; other site" /db_xref="CDD:29487" misc_feature complement(order(142645..142647,142666..142668, 142951..142956,142966..142968,142975..142977, 143086..143088,143110..143112)) /gene="cyoC" /locus_tag="AGROH133_03040" /note="Subunit III/IV interface [polypeptide binding]; other site" /db_xref="CDD:29487" gene complement(143217..145220) /gene="cyoB" /locus_tag="AGROH133_03046" /db_xref="GeneID:10265893" CDS complement(143217..145220) /gene="cyoB" /locus_tag="AGROH133_03046" /EC_number="1.10.3.-" /note="Cytochrome o ubiquinol oxidase, subunit I; Heme/copper-type cytochrome/quinol oxidases, subunit 1" /codon_start=1 /transl_table=11 /product="cytochrome ubiquinol oxidase subunit I" /protein_id="YP_004277447.1" /db_xref="GI:325291583" /db_xref="GeneID:10265893" /translation="MIVNSDQTSFLFGKLTWESIPLHEPILVATFAAVALGGIAVVGA LTYFRLWGYLWNEWFTSIDHKKIGIMYIILALVMLLRGFADAIMMRVQQAIASGGSEG YLPPHHYDQIFTAHGVIMIFFMAMPMITGLMNFVVPLQIGARDVSFPFLNNFSFWMTT AGAVITMISLFIGEYAQTGWLAYPPLSGIDGSPGVGVDYYIWGLQIAGVGTTLSGINL IVTIIKMRAPGMTMMRLPIFVWTSLCSNILIVASFPILTGTLALLTLDRYVGTNFFTN DLGGNPMMYVNLIWIWGHPEVYILVLPAFGVFSEIVSTFSNKRLFGYASMVYATGVIT ILAYIVWLHHFFTMGSGASVNAFFGITTMIISIPTGAKIFNWLFTMYKGRIKFDVPML WTIGFMITFVIGGMTGVLLAVPPADFVLHNSLFLIAHFHNTIIGGVVFGVLAGIVYWF PKAFGYRLDPFWGKLSFWFWFIGFYFAFMPLYILGLMGVTRRISQFEDNSLQIWFLIA AFGAFLIALGIASFVIQLIVSFLKRDQLRDVTGDPYHGRTLEWSTSSPPPAYNFAFTP VVHDVDAWADMKKRGYDRPKEGFIPIHMPKNTGAGVIISAISVVLGFALVWHIWWLAA LSMLAIIAVSIAHTFNYNREYYIPASDVSTVEAERTKLLAEQA" misc_feature complement(143370..145079) /gene="cyoB" /locus_tag="AGROH133_03046" /note="Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]; Region: CyoB; COG0843" /db_xref="CDD:31185" misc_feature complement(143535..145049) /gene="cyoB" /locus_tag="AGROH133_03046" /note="Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons...; Region: Ubiquinol_Oxidase_I; cd01662" /db_xref="CDD:29933" misc_feature complement(order(144558..144560,144570..144572, 144588..144593,144756..144758,144765..144767, 144786..144788,144816..144818,145008..145010)) /gene="cyoB" /locus_tag="AGROH133_03046" /note="D-pathway; other site" /db_xref="CDD:29933" misc_feature complement(order(144882..144890,144897..144899, 144954..144959,144966..144968,144978..144980)) /gene="cyoB" /locus_tag="AGROH133_03046" /note="Putative ubiquinol binding site [chemical binding]; other site" /db_xref="CDD:29933" misc_feature complement(order(143676..143678,143790..143792, 143916..143918,143928..143930,144873..144875)) /gene="cyoB" /locus_tag="AGROH133_03046" /note="Low-spin heme (heme b) binding site [chemical binding]; other site" /db_xref="CDD:29933" misc_feature complement(order(143748..143750,143955..143960, 143970..143972,144360..144365,144378..144380)) /gene="cyoB" /locus_tag="AGROH133_03046" /note="Putative water exit pathway; other site" /db_xref="CDD:29933" misc_feature complement(order(143934..143936,144189..144194, 144339..144341)) /gene="cyoB" /locus_tag="AGROH133_03046" /note="Binuclear center (heme o3/CuB) [ion binding]; other site" /db_xref="CDD:29933" misc_feature complement(order(144105..144107,144114..144116, 144189..144194,144294..144296,144327..144329, 144339..144341)) /gene="cyoB" /locus_tag="AGROH133_03046" /note="K-pathway; other site" /db_xref="CDD:29933" misc_feature complement(order(143745..143750,143955..143960, 144189..144191)) /gene="cyoB" /locus_tag="AGROH133_03046" /note="Putative proton exit pathway; other site" /db_xref="CDD:29933" gene complement(145297..146370) /gene="cyoA" /locus_tag="AGROH133_03061" /db_xref="GeneID:10265894" CDS complement(145297..146370) /gene="cyoA" /locus_tag="AGROH133_03061" /EC_number="1.10.3.-" /note="CyoA: ubiquinol oxidase, subunit II; Heme/copper-type cytochrome/quinol oxidases, subunit 2" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit II" /protein_id="YP_004277448.1" /db_xref="GI:325291584" /db_xref="GeneID:10265894" /translation="MIKKITSALLAIPALLLLSGCNLVVMNPSGDVAIQQRDLIITST VLMLLIIVPVIALTLFFAWKYRESAKAEDYDPEWHHSTRLEMVIWSAPVAIILMLGTV TWISTHRLDPYRPLERIDENRQVTAETKPLTVEVVAMDWKWLFFYPELGIGSVNEFAA PVDVPINFKITGTTAMNSFFVPALAGQIYAMGGMQTKLHAVINKEGVYDGFSANFSGP GFSHMRFKFHGLSQQGFDQWVAKIKDGGKGFGRQEYLDFAKPSEREPVQYFASVDPQL YDAILNRCVEPNKLCMRDMMHIDAKGGGGKEGIDIAKALNSVVCTPLSPYGVASGPQS TPAAIEGQTFEPAALPETKQVAG" misc_feature complement(145642..146316) /gene="cyoA" /locus_tag="AGROH133_03061" /note="cytochrome o ubiquinol oxidase subunit II; Region: CyoA; TIGR01433" /db_xref="CDD:130500" misc_feature complement(145702..>145905) /gene="cyoA" /locus_tag="AGROH133_03061" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" misc_feature complement(145504..145644) /gene="cyoA" /locus_tag="AGROH133_03061" /note="COX Aromatic Rich Motif; Region: COX_ARM; pfam06481" /db_xref="CDD:148220" gene 146677..148005 /locus_tag="AGROH133_03066" /db_xref="GeneID:10265895" CDS 146677..148005 /locus_tag="AGROH133_03066" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004277449.1" /db_xref="GI:325291585" /db_xref="GeneID:10265895" /translation="MSYTDAAPSFGQAPEAKGHGTDPVKVDPDRITIAVILARMTEFF DFFIYAIASALVFPHVFFSFVDPLTATLYSFAVFSLAFIARPIGSLIFLQIDRKFGRA VKLMAALFTLCGSTMAISFLPSYAEAGMLAPCLLAVFRIGQGLGLGGAWDGLVSLLAM NAPPKQRGWYAMMPQIGAAMGFGLASAFFIVFVTQLSSAEFLAWGWRFPFFVALALNV LALFARLRMIVTPEFQSMLAQHELEPRPVFKMLRSQFPVVLTGAFVPLASFALFHLVT VFPLSWVSLNTTQRVSDFLFVQFVSAIIAGGMIVVSGILADKIGRRKLLAFAAVLIGL FSLVAPLLLSSGDIGRYLFVLVGFALLGLSFGQAGGALASRFSREYRYTGASLTSDIS WLIGAGFAPLVALGFSSKFGLFAVGIYLMSGAVCTLVALWFSRTLDMPSE" misc_feature 146794..147960 /locus_tag="AGROH133_03066" /note="metabolite-proton symporter; Region: 2A0106; TIGR00883" /db_xref="CDD:188094" gene complement(148161..148430) /locus_tag="AGROH133_03079" /db_xref="GeneID:10265896" CDS complement(148161..148430) /locus_tag="AGROH133_03079" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277450.1" /db_xref="GI:325291586" /db_xref="GeneID:10265896" /translation="MLRHAQGSLLSLRIPRGIALFPKPGASAGTLRAEPQATWLLLFF SAYRRLMARTVVLRPPNGVAALAAFSQIMIVIVRIAFPDGRHFRQ" gene 148413..153917 /gene="gltB" /locus_tag="AGROH133_03081" /db_xref="GeneID:10265897" CDS 148413..153917 /gene="gltB" /locus_tag="AGROH133_03081" /EC_number="1.4.1.13" /note="Conserved region in glutamate synthase; Glutamate synthase domain 2" /codon_start=1 /transl_table=11 /product="glutamate synthase large subunit" /protein_id="YP_004277451.1" /db_xref="GI:325291587" /db_xref="GeneID:10265897" /translation="MSVTEQKFGLYDAAFEKSSCGVGFITRKDGVQTHDVLKRGHEAL CAVPHRGGMSAEGVGDGAGVSLDLSLSFFRKLTDNDSLQAGRFGVGNFFLPQNPAFHD QAIGIIGSALEEQGFSILLVRNVPVNDAAIRAAAISYQLPIRQWVFSAPAECATLAEF DWRIHKALLAIEALAYTAPELAGFYPLSLSARTQVLKGRLNSHEVMPYFCDLTDPRHE VHTMYFHTRFSTNTDPHPSMAQPFRLMAHNGELNTDKKNRLSEAAVALAKNASIIRPK GQSDSCRLDQTLQARVMEDGLDLVTAVVSMMPPAWENDDTLSPGVKAMLEYFSLYEEK NDGPAALIFGDGTIVGARLDRLGLRPLRTIETDDYLCVMSEAGQIAFPAESVIRRGRI EAGGMLYYDHAERRAFSTVEALELLAARRDYPSLLSEARVMLADLPEVPAEKQGSPLR YNGDLERHQRYVAYSHNQESFKFLMDPMLASGAEKISAMGYGNAINALSDQEGGVAKY FSQRFAQVTNPPLDSIREADGMTLRVALGAKPNSGAKAARQIVVRSPILTHLDMLRIR EQSETPVRRFEMLYTPIFDAASANEAALRQAIDGLCGEVVAFAAGEGGIAVVTDRHVS AGRAALPMIMVLSAINQRLIEEGLRLRVSLIVESGQFSSSHHIAAGLGFGASAVYPLG VQFRAEEKFGADADKAFKRFAKAAEKSLMKTMGKVGLCTAESYIGGEFFEPNFLDTND PVLKRYFPNVKTPVGGVTFAVIAQAVVDWHRKALSVKGENDIPLLGLFKERAEGAGHS YGTTAVRGFVDMTEEKIGFDKGTDNEEALRLLPLNRLEDAFGLNDAAYYHNSFDRLTP EAIDAFEVTPGYRAFARMMAEERARRPAALRDVLELPADVTFAGSAEEFRREMGRFSR RGNNSFMVRGLLCESGGEGAFRLQLTGPQGHELSRLAALGQSLLDRFGEDIAGHWLEG GALLVQAKGEAFTYLSLIRTAPDSIALDAVQKASEITKTLASGAMSHGALVAAAHEAV AHGTNMVGGMSNSGEGGEHISRYGTIRASRIKQFASGRFGVWAGYLADPMLEEIEIKI GQGAKPGEGGQLPSPKVTVEIAAARGGTPGVELVSPPPHHDTYSIEDLAQLIHDAKAA RVRVIVKLVSSEGIGTIAVGVAKAGADVINVAGNTGGTGAAAVTSLKYTGRAAEIGIA EVHQALCATGLRAKVLLRCSGAHQTASDVVKSALLGGDSFEFGTTALMMLKCVMAKNC NIKCPAGLTTNQEAFNGDPRALAQYLMNIAHETREILAALGLRSLREARGRSDLLHLL DHPASVGQLDLRAMLSVVEEVKIDSPVYMEKDFALDDAFIELVRSALIDSKRENIELG GNRFLNNCNKSVGGQLAVDIERMLNHELSDEEADALPAVKRDSRGRRFLEAGSVRIDT SGSAGQSFGAFCNDGMVMVHTGTCNDGVGKSACGGTIVVRSPGGGSQDADGNVLVGNF ALFGATGGRTFVEGQAGDRFAVRNSGATAVVEGVGDFACEYMTNGAVLNLGSFGKGFG NGMSGGFVYQYDPYGDLPKKVSHDSILLGSITGEDEQASIHNQAVHQLLTWHVDETGS AKAAWILENWESEQHNFVYGMPRALLLYQDSDEILKAKPRKELLEELASALAAHQVRK FKLAYRDRKAVLNGTVPGYGETDTEDMYALINNYTVLSMAQAIALQRLPMASGPSDPA IEKAVRNLVLTEDYALMQRLLKYAREALSDHDDEQLAVMIAAKRLDDYKQALARRNIW SVDSPGTYGWIIQQDRKNIEKIGRLPGFEELFAARAIPDLATASSQNRAA" misc_feature 148470..149675 /gene="gltB" /locus_tag="AGROH133_03081" /note="Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-...; Region: GltS; cd00713" /db_xref="CDD:48477" misc_feature order(148470..148472,148560..148562,149091..149093, 149154..149162,149250..149252) /gene="gltB" /locus_tag="AGROH133_03081" /note="active site" /db_xref="CDD:48477" misc_feature order(148716..148718,148725..148727,148737..148739, 148776..148778,148782..148784,148797..148799, 148830..148832,148842..148844,149109..149111) /gene="gltB" /locus_tag="AGROH133_03081" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48477" misc_feature 149775..150611 /gene="gltB" /locus_tag="AGROH133_03081" /note="Glutamate synthase central domain; Region: Glu_syn_central; pfam04898" /db_xref="CDD:147192" misc_feature 150537..>151016 /gene="gltB" /locus_tag="AGROH133_03081" /note="Glutamate synthase domain 2 [Amino acid transport and metabolism]; Region: GltB; COG0069" /db_xref="CDD:30418" misc_feature 151416..152369 /gene="gltB" /locus_tag="AGROH133_03081" /note="Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant...; Region: GltS_FMN; cd02808" /db_xref="CDD:73370" misc_feature order(151455..151466,151545..151547,151599..151601, 151671..151673,151689..151691,151749..151751, 151869..151871,151959..151967,152082..152084, 152088..152090,152151..152156,152178..152180, 152196..152198,152208..152210) /gene="gltB" /locus_tag="AGROH133_03081" /note="active site" /db_xref="CDD:73370" misc_feature order(151455..151466,151545..151547,151599..151601, 151671..151673,151869..151871,151959..151964, 152082..152084,152088..152090,152151..152156) /gene="gltB" /locus_tag="AGROH133_03081" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature order(151689..151691,151749..151751,151962..151967) /gene="gltB" /locus_tag="AGROH133_03081" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73370" misc_feature order(152178..152180,152196..152198,152208..152210) /gene="gltB" /locus_tag="AGROH133_03081" /note="3Fe-4S cluster binding site [ion binding]; other site" /db_xref="CDD:73370" misc_feature 152475..153311 /gene="gltB" /locus_tag="AGROH133_03081" /note="gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the...; Region: gltB_C; cd00982" /db_xref="CDD:29611" misc_feature order(152586..152591,152598..152600,152607..152612, 152727..152729,152736..152741,152751..152753, 152787..152795,152808..152810,152817..152819, 152874..152885,152892..152894,152901..152903, 152910..152912,152937..152951,152958..152963, 152967..152969,152994..153005,153012..153017, 153021..153023,153060..153062,153069..153071, 153078..153080,153123..153134) /gene="gltB" /locus_tag="AGROH133_03081" /note="domain interface; other site" /db_xref="CDD:29611" gene 153914..155680 /gene="cysJ" /locus_tag="AGROH133_03082" /db_xref="GeneID:10265898" CDS 153914..155680 /gene="cysJ" /locus_tag="AGROH133_03082" /EC_number="1.8.1.2" /note="cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component; Sulfite reductase, subunit alpha (flavoprotein)" /codon_start=1 /transl_table=11 /product="sulfite reductase NADPH flavoprotein alpha-component" /protein_id="YP_004277452.1" /db_xref="GI:325291588" /db_xref="GeneID:10265898" /translation="MMKIPYIPQDAPFNGDQRAWLSGFLAGLHSRAAMGMDTSVAAAA PKAAASVLNILFGTQTGNAEALAMDIADAARAQGMQPVVTALDDVSMDSLGAMKRVIV VTSTYGEGEMPDNAQLFWEALSKEAAPRLDEMNFAVLALGDTGYDGFCQAGKLIDTRF EQLGGKRMKTRIDCDIDFEDVAANWIGETLPLALAIDGGNKAAVVPAIAEAPARAKQG WSRKNPYAAQVSVNRLLSGPASSKEIRHYEFDLGESGLDYEAGDALGVVPLNDPKLVG ALLERFGVSADGEVAGLDRPVGDALLNMFEISTPSRELVAEIGKRAGHDELSHILANG DREQLAAFLWSKDILDLLSLGEKPVFDLAEFVTFLKPLQHRAYSISSSPLAAHNSVHL TVASVRYRAEGRERGGVCSTYLADRVEAGQSAGIFVSPNKAFRVPQDNDAPVIMVGPG TGIAPFRAFLQERQARGAKGRNWLFFGDQHRQSDFVYEDELGKMSRDGVLTRLDLAFS RDQAEKIYVQTRMRQNGKALYQWLEEGGHFYVCGDATRMAKDVDDALHQIVIDEAGIS AEAASDYVNRLKREKRYLRDVY" misc_feature 153917..155677 /gene="cysJ" /locus_tag="AGROH133_03082" /note="Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]; Region: CysJ; COG0369" /db_xref="CDD:30718" misc_feature 154073..154468 /gene="cysJ" /locus_tag="AGROH133_03082" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" misc_feature 154598..155677 /gene="cysJ" /locus_tag="AGROH133_03082" /note="Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ...; Region: SiR; cd06199" /db_xref="CDD:99796" misc_feature order(154700..154702,155036..155047,155090..155092, 155096..155098,155135..155146) /gene="cysJ" /locus_tag="AGROH133_03082" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99796" misc_feature order(155036..155038,155042..155047) /gene="cysJ" /locus_tag="AGROH133_03082" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99796" misc_feature order(155045..155047,155534..155536,155669..155671, 155675..155677) /gene="cysJ" /locus_tag="AGROH133_03082" /note="catalytic residues [active]" /db_xref="CDD:99796" misc_feature order(155096..155107,155258..155260,155264..155266, 155345..155350,155435..155440,155459..155461, 155465..155467,155552..155554) /gene="cysJ" /locus_tag="AGROH133_03082" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99796" misc_feature order(155135..155137,155144..155146,155153..155155) /gene="cysJ" /locus_tag="AGROH133_03082" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99796" misc_feature order(155249..155251,155261..155272,155276..155278) /gene="cysJ" /locus_tag="AGROH133_03082" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99796" gene complement(155700..156293) /locus_tag="AGROH133_03083" /db_xref="GeneID:10265899" CDS complement(155700..156293) /locus_tag="AGROH133_03083" /note="Flp pilus assembly protein TadG" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277453.1" /db_xref="GI:325291589" /db_xref="GeneID:10265899" /translation="MMAGLVSTITNGRLRFIALVARFARDRRGVGAVEFAIVFPILLA LYLTSFELTIGYNTYKRASSASATINDLISKTNSVDKAYLTSMQDVTAAVFAPYSTKG LQLKISGIKIDKQKQATIAWSWNEKNARPYVVGSPVSVPTRLLVADSFLIHVELSVPH ELLMFMPDISSSGVRSITIARDYFFKQRDAEITCSNC" misc_feature complement(155703..156242) /locus_tag="AGROH133_03083" /note="Flp pilus assembly protein TadG [Intracellular trafficking and secretion]; Region: TadG; COG4961" /db_xref="CDD:34568" misc_feature complement(156090..156209) /locus_tag="AGROH133_03083" /note="TadE-like protein; Region: TadE; pfam07811" /db_xref="CDD:191859" gene complement(156290..156886) /locus_tag="AGROH133_03085" /db_xref="GeneID:10265900" CDS complement(156290..156886) /locus_tag="AGROH133_03085" /note="Flp pilus assembly protein TadG" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277454.1" /db_xref="GI:325291590" /db_xref="GeneID:10265900" /translation="MRLAKLKPLLEKFGLSRDGTAAIEFAILALPYFLVVFAIIETFI ALMAEQVVVNATDTMARRLRTGQISSSISKEDFRKSFCSEVSVIITCSADEFKKEQKL YIDLRSFPAFKDIPTTIPLKANGEYYDLDTAQFGFKPGGPDTINMLRVYYRWRVVADI IRPYLTKIRPADGSMPSHFLIVATDAFMNEKYTTSGGS" misc_feature complement(156305..156886) /locus_tag="AGROH133_03085" /note="Flp pilus assembly protein TadG [Intracellular trafficking and secretion]; Region: TadG; COG4961" /db_xref="CDD:34568" misc_feature complement(156704..156832) /locus_tag="AGROH133_03085" /note="TadE-like protein; Region: TadE; pfam07811" /db_xref="CDD:191859" gene complement(157076..157882) /gene="fabI" /locus_tag="AGROH133_03087" /db_xref="GeneID:10265901" CDS complement(157076..157882) /gene="fabI" /locus_tag="AGROH133_03087" /EC_number="1.3.1.9" /note="Catalyzes a key regulatory step in fatty acid biosynthesis; Enoyl-[acyl-carrier-protein] reductase (NADH)" /codon_start=1 /transl_table=11 /product="enoyl-acyl carrier protein reductase" /protein_id="YP_004277455.1" /db_xref="GI:325291591" /db_xref="GeneID:10265901" /translation="MNGIMQGKRGLIMGVANNHSIAWGISKALAAQGAELAFTYQGEA LGKRVKPLAAELGSDFIVPCDVEDIASVDALFAAIREKWGTLDFVVHAIGFSDKNELK GLYADTTRENFSRTMVISCFSFTEIAKRAAELMTNGGSMLTLTYNGSQRVIPNYNVMG VAKAALEASVRYLAADYGPRDIRVNAISAGPVRTLAGAGISDARAIYAWNQKNAPLRR TADIDDIGGSALYLLSNMSRGVTGECHYVDCGYNITSTPTLEVLSKADAE" misc_feature complement(157079..157882) /gene="fabI" /locus_tag="AGROH133_03087" /note="enoyl-(acyl carrier protein) reductase; Provisional; Region: PRK06505" /db_xref="CDD:180596" misc_feature complement(157124..157864) /gene="fabI" /locus_tag="AGROH133_03087" /note="Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; Region: ENR_SDR; cd05372" /db_xref="CDD:187630" misc_feature complement(order(157292..157303,157307..157318, 157394..157396,157415..157417,157445..157453, 157526..157528,157598..157609,157685..157693, 157760..157762,157820..157825,157835..157843)) /gene="fabI" /locus_tag="AGROH133_03087" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(157124..157129,157133..157171, 157175..157177,157190..157192,157199..157204, 157211..157213,157229..157240,157256..157258, 157265..157267,157346..157351,157355..157372, 157376..157381,157388..157393,157400..157405, 157412..157417,157421..157432,157436..157441, 157487..157489,157496..157498,157508..157510, 157517..157522,157529..157534,157541..157546, 157553..157573,157667..157669,157676..157687, 157790..157792)) /gene="fabI" /locus_tag="AGROH133_03087" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(157352..157360,157364..157372, 157376..157381,157388..157393,157400..157405, 157412..157417,157424..157432,157436..157441, 157487..157489,157496..157501,157508..157510, 157517..157522,157529..157534,157541..157546, 157553..157573,157676..157687)) /gene="fabI" /locus_tag="AGROH133_03087" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(157274..157276,157283..157285, 157292..157297,157394..157396,157406..157408, 157415..157417,157445..157447,157595..157597, 157601..157603)) /gene="fabI" /locus_tag="AGROH133_03087" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(157394..157396,157406..157408, 157445..157447,157523..157525)) /gene="fabI" /locus_tag="AGROH133_03087" /note="active site" /db_xref="CDD:187630" gene complement(157888..159111) /gene="fabB" /locus_tag="AGROH133_03088" /db_xref="GeneID:10265902" CDS complement(157888..159111) /gene="fabB" /locus_tag="AGROH133_03088" /EC_number="2.3.1.41" /note="FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl-carrier-protein) synthase" /codon_start=1 /transl_table=11 /product="3-oxoacyl-acyl carrier protein synthase I" /protein_id="YP_004277456.1" /db_xref="GI:325291592" /db_xref="GeneID:10265902" /translation="MRRVVVTGLGIVSSIGGDAAEVTASLRDAKSGISFSPDFAEHGF KCQVWGKPSLDPTELVDRRAMRFLSQGGAWNHVAMKQAIADSGLEESDISGNERTGII MGSGGPSTRTIVEAADITLKNNSPKRIGPFAVPKAMSSTASATLATWFKIHGVNYSIS SACSTSAHCIGNAAEMIQWGKQDVMFAGGHEDLDWSMSNLFDAMGAMSSKYNETPNLA SRAYDVNRDGFVIAGGAGVLVLEELEHAKARGAKIYAEIVGYGATSDGYDMVAPSGEG AIRCMRQALSTVKGDIDYINTHGTSTPVGDSKEIGAIREVFGDKIPHIQSTKSLTGHS LGAAGVQESIYGLLMMQERFIGESAHISELDPEFAGVPIVRSRIDNAKIDTILSNSFG FGGTNATLVFQRHNG" misc_feature complement(157891..159111) /gene="fabB" /locus_tag="AGROH133_03088" /note="3-oxoacyl-(acyl carrier protein) synthase I; Reviewed; Region: PRK07967" /db_xref="CDD:181184" misc_feature complement(157906..159108) /gene="fabB" /locus_tag="AGROH133_03088" /note="Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834" /db_xref="CDD:29421" misc_feature complement(order(157924..157926,157930..157932, 158275..158277,158311..158325,158500..158505, 158512..158517,158575..158577,158584..158589, 158596..158598,158632..158640,158644..158646, 158650..158652,158668..158670,158680..158682, 158692..158694,158710..158712,158746..158751, 158758..158760,158770..158775,158794..158796)) /gene="fabB" /locus_tag="AGROH133_03088" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29421" misc_feature complement(order(158113..158115,158218..158220, 158623..158625)) /gene="fabB" /locus_tag="AGROH133_03088" /note="active site" /db_xref="CDD:29421" gene complement(159187..159702) /gene="fabA" /locus_tag="AGROH133_03089" /db_xref="GeneID:10265903" CDS complement(159187..159702) /gene="fabA" /locus_tag="AGROH133_03089" /EC_number="4.2.1.60" /note="catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases" /codon_start=1 /transl_table=11 /product="3-hydroxydecanoyl-acyl carrier protein dehydratase" /protein_id="YP_004277457.1" /db_xref="GI:325291593" /db_xref="GeneID:10265903" /translation="MATRQSSYNYEEILSCGRGELFGPGNAQLPLPPMLMVHRITEIS ETGGAFDKGFIRAEYDVSPDDWYFPCHFQGNPIMPGCLGLDGMWQLTGFFLGWLGEEG RGMALSTGEVKFKGMVRPETKLLQYGIDFKRVMRGRLVLGTADGWLKADGETIYQATD LRVGLSKEKTA" misc_feature complement(159199..159624) /gene="fabA" /locus_tag="AGROH133_03089" /note="FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA...; Region: FabA; cd01287" /db_xref="CDD:48032" misc_feature complement(order(159382..159393,159424..159429, 159436..159441,159448..159450,159616..159624)) /gene="fabA" /locus_tag="AGROH133_03089" /note="active site 1 [active]" /db_xref="CDD:48032" misc_feature complement(order(159352..159357,159361..159363, 159367..159393,159448..159450,159460..159462, 159613..159615,159619..159621)) /gene="fabA" /locus_tag="AGROH133_03089" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48032" misc_feature complement(order(159352..159363,159463..159471)) /gene="fabA" /locus_tag="AGROH133_03089" /note="active site 2 [active]" /db_xref="CDD:48032" gene 160019..160438 /gene="irr" /locus_tag="AGROH133_03090" /db_xref="GeneID:10265904" CDS 160019..160438 /gene="irr" /locus_tag="AGROH133_03090" /note="Ferric uptake regulator family; Fe2+/Zn2+ uptake regulation proteins" /codon_start=1 /transl_table=11 /product="FUR family transcriptional regulator" /protein_id="YP_004277458.1" /db_xref="GI:325291594" /db_xref="GeneID:10265904" /translation="MAFDATLDIGTRLRRSGLRPTRQRVALGDLLFAKGDRHLTVEEL HDEAVTAGVPVSLATVYNTLHQFTEAGLIRVLAVEGARTYFDTNVSDHHHFFVEGENE VLDIPVNNLQIDNLPEAPEGMEIAHVDVVIRLRRKRG" misc_feature 160082..160417 /gene="irr" /locus_tag="AGROH133_03090" /note="Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153" /db_xref="CDD:133478" misc_feature order(160130..160132,160274..160276,160295..160297, 160301..160303,160331..160333) /gene="irr" /locus_tag="AGROH133_03090" /note="metal binding site 2 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature 160184..160228 /gene="irr" /locus_tag="AGROH133_03090" /note="putative DNA binding helix; other site" /db_xref="CDD:133478" misc_feature order(160292..160294,160298..160300,160400..160402) /gene="irr" /locus_tag="AGROH133_03090" /note="metal binding site 1 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature order(160307..160309,160310..160312,160355..160360, 160385..160393,160397..160417) /gene="irr" /locus_tag="AGROH133_03090" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133478" gene complement(160511..161149) /locus_tag="AGROH133_03091" /db_xref="GeneID:10265905" CDS complement(160511..161149) /locus_tag="AGROH133_03091" /note="Protein of unknown function UPF0126; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277459.1" /db_xref="GI:325291595" /db_xref="GeneID:10265905" /translation="MTLLGFLDYAGVAVFAATGALAASRKQLDLIGFLFFAAATGIGG GTVRDLVLGRAPVFWVLNPTYILVCVSVAVLLFFTAYLFESRYRVLIWLDAVGLSAYC VMGAAKGLAASGSATVAIVTGVLTATFGGVLRDVLAGEPSVLLRPEIYITCALLGASI FTGAYFLGAPLYVASGIGVLTAFGVRSGALIFGWTFPPYKGKPGRRPEDILK" misc_feature complement(160532..161149) /locus_tag="AGROH133_03091" /note="Predicted membrane protein [Function unknown]; Region: COG2860" /db_xref="CDD:32687" misc_feature complement(160646..160882) /locus_tag="AGROH133_03091" /note="UPF0126 domain; Region: UPF0126; pfam03458" /db_xref="CDD:146214" gene 161089..161745 /locus_tag="AGROH133_03098" /db_xref="GeneID:10265906" CDS 161089..161745 /locus_tag="AGROH133_03098" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277460.1" /db_xref="GI:325291596" /db_xref="GeneID:10265906" /translation="MRRLRQTRQRRHNRENPAVSWKRSPRKFGCVCVSVAQARNSRLA ARMIATSINETDAKENAVRIAIVAALQALVLLMFPVALAAQQQLVNDPEIYEKDHFRK ECKTAGFGDDFITRLDINNDGLMDAVVNHGVLDCDGEKGRSCDDEGCPYNFYVQVKEG GYLMIATARIYGYDFIKRFGNMVFVLKMHPRYCDRTDKEACLMTVRVRGTKFVTISRK " gene complement(161758..162468) /locus_tag="AGROH133_03100" /db_xref="GeneID:10265907" CDS complement(161758..162468) /locus_tag="AGROH133_03100" /note="Protein of unknown function DUF1275; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277461.1" /db_xref="GI:325291597" /db_xref="GeneID:10265907" /translation="MTRQRRRNIIRARRTGTGIALVAAISFIAGMTDAVGLHLSGDFV SFMTGNTTRAAISVEAGIYSHAAKLLFAIIAFVAGNAGGIVVAHKFDRSIFAVLVAVG SLVAIAALLRGDGSALAQFYLVVFAMGMVNAAVEHIEGLPIGLTYVTGALSRFGRGIG RYLLGERCLDWGIQIVPWLGMISGAICGAVLGATLQYDALWVVAATVFAVAIATLVIP RSLRHRYNQRVRIRRIAP" misc_feature complement(161884..162408) /locus_tag="AGROH133_03100" /note="Protein of unknown function (DUF1275); Region: DUF1275; cl01453" /db_xref="CDD:194139" gene 162674..163615 /locus_tag="AGROH133_03108" /db_xref="GeneID:10265908" CDS 162674..163615 /locus_tag="AGROH133_03108" /note="ABC transporter substrate-binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="ABC transporter substrate-binding protein" /protein_id="YP_004277462.1" /db_xref="GI:325291598" /db_xref="GeneID:10265908" /translation="MKKTWVIAAIATLVSSASAYAETSVTIGMSGWTGFAPLTLAKQA GIFEKNGLKVDIKKIPQASRHLALASGDIQCAATTVETWIAWNANGVKSTQIFQMDKS HGADGIAVRSDVAKVSDLKGKTVAASAPGTSPYFFLAWILKENGLTLKDVKVVNLEPG PAAQAFVAGQNEAAMTYEPYLSTVRAAPDKGKILATTLDYPAVMDTFGCTPDFLKANP QAAKALADSYFQALELIKTDPAKSYETMGADVKQAGEAFAASAKFLEWQDKAANQKFF DGEFKTFSEKSADLLLEIGVIKSKPDLSTLADTSFIK" misc_feature 162674..163612 /locus_tag="AGROH133_03108" /note="ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715" /db_xref="CDD:31059" misc_feature 162740..>163450 /locus_tag="AGROH133_03108" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 163757..164530 /locus_tag="AGROH133_03110" /db_xref="GeneID:10265909" CDS 163757..164530 /locus_tag="AGROH133_03110" /note="ABC transporter transmembrane protein; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004277463.1" /db_xref="GI:325291599" /db_xref="GeneID:10265909" /translation="MQPLQPIKNSTRIFLGILFFVLFFSAWGFATLGGFVSPTFLADP ITMLKDGIYLLTDQGFASDIGMTIWRVVGGFVLASLVAVPVGIAMGAYKPVEALLEPF VSFARYLPASAFVPLLILWAGIGEMQKLLVIFIGAVFQIILMVAVAVAGTRRDLVEAA YTLGAKDRGVVRRVLIPANAPDIAEILRLVLGWAWTYVIVAELIGASSGIGYMIINSQ ALMATGQIIFGIIVIGVIGLISDFAFKSLNRKLFAWRLA" misc_feature 163946..164416 /locus_tag="AGROH133_03110" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(163994..163999,164006..164011,164024..164026, 164051..164062,164066..164095,164102..164107, 164111..164113,164180..164185,164189..164191, 164195..164197,164204..164209,164213..164215, 164216..164218,164267..164269,164309..164314, 164321..164323,164342..164353,164360..164365, 164402..164407) /locus_tag="AGROH133_03110" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(164069..164113,164342..164359) /locus_tag="AGROH133_03110" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(164111..164113,164165..164167,164360..164362, 164396..164398,164405..164407) /locus_tag="AGROH133_03110" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(164219..164257,164273..164278,164288..164290) /locus_tag="AGROH133_03110" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 164530..165315 /locus_tag="AGROH133_03117" /db_xref="GeneID:10265910" CDS 164530..165315 /locus_tag="AGROH133_03117" /note="ABC transporter nucleotide-binding protein/ATPase; ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277464.1" /db_xref="GI:325291600" /db_xref="GeneID:10265910" /translation="MSELVIKGVSRTFPGVQGGQPTLALQPTDLEISRNDFVTILGPS GCGKSTLLRIIAGLDRPTTGEVLLSGRAVTGPGADRGMVFQSYTLFPWLTIRENVAFG LRERGVAEKEKWEIVDSYIDKVGLRGFENHWPKQLSGGMQQRTAIARALANGPKILLL DEPFGALDNQTRGLMQELLLGIWEREQKTVIFVTHDIEEAVFMASRVVTMSARPGRIK SIMPVDLPHPRHYTVKASPEFSQLRAKLTEEIRSEAIAAAAHG" misc_feature 164530..165288 /locus_tag="AGROH133_03117" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116" /db_xref="CDD:31313" misc_feature 164539..165204 /locus_tag="AGROH133_03117" /note="NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars...; Region: ABC_NrtD_SsuB_transporters; cd03293" /db_xref="CDD:73052" misc_feature 164653..164676 /locus_tag="AGROH133_03117" /note="Walker A/P-loop; other site" /db_xref="CDD:73052" misc_feature order(164662..164667,164671..164679,164782..164784, 165010..165015,165112..165114) /locus_tag="AGROH133_03117" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73052" misc_feature 164773..164784 /locus_tag="AGROH133_03117" /note="Q-loop/lid; other site" /db_xref="CDD:73052" misc_feature 164938..164967 /locus_tag="AGROH133_03117" /note="ABC transporter signature motif; other site" /db_xref="CDD:73052" misc_feature 164998..165015 /locus_tag="AGROH133_03117" /note="Walker B; other site" /db_xref="CDD:73052" misc_feature 165022..165033 /locus_tag="AGROH133_03117" /note="D-loop; other site" /db_xref="CDD:73052" misc_feature 165100..165120 /locus_tag="AGROH133_03117" /note="H-loop/switch region; other site" /db_xref="CDD:73052" gene 165351..166088 /gene="hutC" /locus_tag="AGROH133_03118" /db_xref="GeneID:10265911" CDS 165351..166088 /gene="hutC" /locus_tag="AGROH133_03118" /note="Histidine utilization repressor; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004277465.1" /db_xref="GI:325291601" /db_xref="GeneID:10265911" /translation="MRSTGADLQEKSLHERIRNDVERHIMSGEWPPGYRIPYEHEMTR QYACSRMTVNKALSELVQRGLIERRRRLGTFVRQPHAQSAVLEIHDIEREVQALGLVY GYRLDRRRLRPAGEEDGAAMALAADAPVLELTCTHFAGGVPFCLEERIINVTAVPEAE AADFSQIGPGTWLLKMVPWSAAEHRISAVSADRKNATALGIASGAACLVIHRRTWHGA DYVTSVRVTYPGDRHALVAQFSPSQNT" misc_feature 165384..166073 /gene="hutC" /locus_tag="AGROH133_03118" /note="histidine utilization repressor, proteobacterial; Region: his_ut_repres; TIGR02018" /db_xref="CDD:188194" misc_feature 165384..165581 /gene="hutC" /locus_tag="AGROH133_03118" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(165384..165386,165390..165392,165459..165461, 165465..165470,165492..165506,165510..165515, 165522..165524,165552..165557,165561..165572) /gene="hutC" /locus_tag="AGROH133_03118" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 165639..166049 /gene="hutC" /locus_tag="AGROH133_03118" /note="UTRA domain; Region: UTRA; cl06649" /db_xref="CDD:195338" gene 166282..167445 /gene="exbB" /locus_tag="AGROH133_03119" /db_xref="GeneID:10265912" CDS 166282..167445 /gene="exbB" /locus_tag="AGROH133_03119" /note="TonB-system energizer ExbB type-1; Biopolymer transport proteins" /codon_start=1 /transl_table=11 /product="biopolymer transport protein" /protein_id="YP_004277466.1" /db_xref="GI:325291602" /db_xref="GeneID:10265912" /translation="MSAETSTSSACFTRANKTRHISLAMTVTLLAGLSAGAVFAQSAS ETPIQPAPAPATERMQPAQSPAETPSAPAVQPVPPSAAAPTQPAPAQPAPAASNPTPA AEGVSPQPTQTEPPAPTNGTAAPNEVSTPVEPVVAEPASAGHRTDIPHNLSPWGMFMA ADWVVKGVMIGLAFASLVTWTVWVAKSIELAGARVRAGATLKVIRRAKTLNEATEAVE KKGGPAALMLRMATHEMQLSDAVVEHTDGGGIKERVSSALSRIETHAGRRMSRGTGAL ATIGSTAPFVGLFGTVWGIMNSFISISESQTTNLAVVAPGIAEALLATAIGLVAAIPA VVIYNVFARSITGYRHLLADAAAGVERLVSRDLDFRRIPPGSSSKPAVSLVGR" misc_feature 166738..167376 /gene="exbB" /locus_tag="AGROH133_03119" /note="MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568" /db_xref="CDD:186086" misc_feature 166750..167391 /gene="exbB" /locus_tag="AGROH133_03119" /note="Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811" /db_xref="CDD:31153" gene 167452..167937 /gene="exbD" /locus_tag="AGROH133_03125" /db_xref="GeneID:10265913" CDS 167452..167937 /gene="exbD" /locus_tag="AGROH133_03125" /note="Biopolymer transport protein ExbD/TolR" /codon_start=1 /transl_table=11 /product="Biopolymer transport protein" /protein_id="YP_004277467.1" /db_xref="GI:325291603" /db_xref="GeneID:10265913" /translation="MAGGIRENSGDDLSENHEINVTPFIDVMLVLLIIFMVAAPLATV DVNVDLPASTAKPAERPEEPLYLTVKDDLSLNLGNDAVAREALAAAIDRQTGGKKDTR IFLRADKAVDYGHFMEIMNLLRDAGYLKIALVGLENAAAATQPAGAVPPAAPAVPGTA P" misc_feature 167452..167862 /gene="exbD" /locus_tag="AGROH133_03125" /note="Biopolymer transport protein ExbD/TolR; Region: ExbD; cl00537" /db_xref="CDD:193858" gene 167934..168860 /gene="tonB" /locus_tag="AGROH133_03127" /db_xref="GeneID:10265914" CDS 167934..168860 /gene="tonB" /locus_tag="AGROH133_03127" /note="TonB, C-terminal; Periplasmic protein TonB, links inner and outer membranes" /codon_start=1 /transl_table=11 /product="tonB protein" /protein_id="YP_004277468.1" /db_xref="GI:325291604" /db_xref="GeneID:10265914" /translation="MTENGYPQSRHSRLGEAALWSAAALLMLGVHAGFAYYLMQEPEE LDAGGPPPAAIMIEMAAIPEAVNTEETTPAQDVEDAEEVKSDNSQPVEEVTPEEPPPP EPVVETPPPEPVQPPEPPVEEIVEPQEIPEPVEPIDPVQEQMMAELENVEVPLPVIRP PPPPVEKKVEKKEPDDKKKVERQRPKPQQASELRETAKAETQQSDRTAASRNNAGFFS SSSASPAKWGSKVRSHIQRRKPRSLRSDAMTATVRFRVNDTGAISGVSVVQSTGDSSI DQQIAAWIQSASPVPAPPPDANKTITLPISIR" gene 169047..170036 /gene="mdh" /locus_tag="AGROH133_03129" /db_xref="GeneID:10265915" CDS 169047..170036 /gene="mdh" /locus_tag="AGROH133_03129" /EC_number="1.1.1.37" /note="Malate/L-lactate dehydrogenases" /codon_start=1 /transl_table=11 /product="Malate/L-lactate dehydrogenase" /protein_id="YP_004277469.1" /db_xref="GI:325291605" /db_xref="GeneID:10265915" /translation="MKFSIAEAEDLVSSIFERNGVLPQNARSVAKALVASEAAGQGGH GFRRIPVYVRQARVGKVDGNARPVAIRVKPGVLSIDANNGYAYPAIDCAVDELPDMAR QQGIALAAIHRSHHAGVMALTVERFAEMGLVALMFANAPASMAPWGGTKPLYGTNPIA FASPVGEADPLVIDLALSKVARGKIMAARQKGETIPGDWALDTNGRPTTDPEEALAGT MVPAGEAKGAALALMVEIMAAALTGGSFAFEASSLLDDKGAPPSLGHTIIAIDPVSSG GAAFTERLALIAGEIEKQENVRLPGRRSQGIRRQALESGIIVESDILAEIQSL" misc_feature 169047..170033 /gene="mdh" /locus_tag="AGROH133_03129" /note="Malate/L-lactate dehydrogenase; Region: Ldh_2; cl00900" /db_xref="CDD:186246" gene complement(170260..170505) /locus_tag="AGROH133_03130" /db_xref="GeneID:10265916" CDS complement(170260..170505) /locus_tag="AGROH133_03130" /note="Winged helix repressor DNA-binding" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_004277470.1" /db_xref="GI:325291606" /db_xref="GeneID:10265916" /translation="MSSKTQHERHQAREIVLSDRERQYLGLVARGRHPSHIALITGAD EADVKDTLERVRLRLGAANLLNAVSIALLRGLIEQDI" misc_feature complement(170275..>170460) /locus_tag="AGROH133_03130" /note="LuxR family transcriptional regulatory, chaperone HchA-associated; Region: reg_near_HchA; TIGR03541" /db_xref="CDD:132580" gene complement(170889..171929) /locus_tag="AGROH133_03131" /db_xref="GeneID:10265917" CDS complement(170889..171929) /locus_tag="AGROH133_03131" /note="Helix-turn-helix, AraC type; AraC-type DNA-binding domain-containing proteins" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004277471.1" /db_xref="GI:325291607" /db_xref="GeneID:10265917" /translation="MPEKRVSDEITVVAGLAAGVANYARSRGIDIAPICKALDIDPAT FGSVTERISLDRFCRLLETCALISGDDAFGLQCASTFPAGASGAFGYGLMSAPTVRAF LRFLQDHVYYATNNSNFTMVTDAAHVTLSWSFAPVIAKRDQYVDLSLTALIQRLRDIL GERVNLIEIGLERPKPVNIQLFKERMTKRVSFSQPIHTMRLPTSLLDVVNPNADERLF ELMNLQCRMLRPETSADATHFIDQVKRYMQVRLSDAELSLSEIAPYFNLSERSFQRRL AELGTNLNEIKDAIRKNAGFKLLVESDLPVSDISYRLGYSTPGAFSRSVSRWFGATPT DIRKKHAHHSAV" misc_feature complement(171309..171848) /locus_tag="AGROH133_03131" /note="Arabinose-binding domain of AraC transcription regulator, N-term; Region: Arabinose_bd; pfam12625" /db_xref="CDD:193103" misc_feature complement(170895..171272) /locus_tag="AGROH133_03131" /note="AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:32389" misc_feature complement(170916..171029) /locus_tag="AGROH133_03131" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene complement(172017..172631) /gene="gmk" /locus_tag="AGROH133_03133" /db_xref="GeneID:10265918" CDS complement(172017..172631) /gene="gmk" /locus_tag="AGROH133_03133" /EC_number="2.7.4.8" /note="Guanylate kinase/L-type calcium channel region; Uncharacterized component of phosphonate metabolism" /codon_start=1 /transl_table=11 /product="guanylate kinase" /protein_id="YP_004277472.1" /db_xref="GI:325291608" /db_xref="GeneID:10265918" /translation="MTGNGQDSRLDGQTLGTVPGTMIVIVGPSGAGKDTLMDYASAQL SGRPGFHFTRRVITRSGDAGGENHDAVSMHEFNRLEEEGAFAVSWQAHGLKYGIPAAV YRHLNAGDVVIANGSRSALPQFGTAFARLKVVNIVARPDVLAKRLEQRGRESREDILR RLERSSLTVVGDFDVTTVDNSGSMEDAGKTIMQVLEQSACRRHI" misc_feature complement(<172521..172622) /gene="gmk" /locus_tag="AGROH133_03133" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(<172293..172568) /gene="gmk" /locus_tag="AGROH133_03133" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(172527..172538,172551..172553)) /gene="gmk" /locus_tag="AGROH133_03133" /note="Active site [active]" /db_xref="CDD:73295" misc_feature complement(172530..172553) /gene="gmk" /locus_tag="AGROH133_03133" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(172527..172535,172539..172544)) /gene="gmk" /locus_tag="AGROH133_03133" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(<172191..>172316) /gene="gmk" /locus_tag="AGROH133_03133" /note="Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl14614" /db_xref="CDD:196795" gene complement(172628..173764) /gene="phnM" /locus_tag="AGROH133_03134" /db_xref="GeneID:10265919" CDS complement(172628..173764) /gene="phnM" /locus_tag="AGROH133_03134" /note="phosphono_phnM: phosphonate metabolism protein PhnM; Metal-dependent hydrolase involved in phosphonate metabolism" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277473.1" /db_xref="GI:325291609" /db_xref="GeneID:10265919" /translation="MTEHALSNARIVLEDDIILGSVLIRDGKIADISEGASKTGEDLE GDFLIPGLVELHTDHLEQHYSPRPGVIWDKIAAIQAHDAQVASSGITTVFDCLRLGSD EDGGFKKGEMREMADAIETAADQNRLRADHLLHLRCEVASADVLEHFEDFETDPRVRL ISMMDHSPGQRQFQSMDQYIFYYQKKRGLSDEAFAEFVRRRQTASAEFSAKHRDYLAA RCAERGITVASHDDATEAHVGEAIGHGVKLAEFPTSVEAAKASHSAGMSVLMGAPNIV RGKSHSGNIAARDLAELGVLDVLSSDYVPFSLLYAPFLLADQVEAITLPEALRMVTST PARTVGLRDRGSIATGLRADLVRVHREDGVPVARSVWRQGKRVA" misc_feature complement(172631..173764) /gene="phnM" /locus_tag="AGROH133_03134" /note="phosphonate metabolism protein PhnM; Provisional; Region: PRK15446" /db_xref="CDD:185343" misc_feature complement(<173594..173755) /gene="phnM" /locus_tag="AGROH133_03134" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature complement(172643..173620) /gene="phnM" /locus_tag="AGROH133_03134" /note="PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage...; Region: PhnM; cd01306" /db_xref="CDD:30049" misc_feature complement(order(172859..172861,173075..173077, 173591..173593,173597..173599)) /gene="phnM" /locus_tag="AGROH133_03134" /note="active site" /db_xref="CDD:30049" gene complement(173761..174459) /locus_tag="AGROH133_03135" /db_xref="GeneID:10265920" CDS complement(173761..174459) /locus_tag="AGROH133_03135" /note="Protein of unknown function DUF1045" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277474.1" /db_xref="GI:325291610" /db_xref="GeneID:10265920" /translation="MLAVRYAIYFSPAKDHPLTEAASRWLGRNAFSGAQHDDHAAYAE MTEEPRRYGFHATLKAPFELSEKYSEADLVAALEQFAASQSVFDIPRVVIGALGPFFA LVPDRIYQPLQDFAAEIVDHFDRFRAPLSETDIARRRPQNLTESQRQNLSLWGYPHVM DDFRFHMTLTGRIDESDAPAIQDVLSTKFSEFVDRPLTISGLALFVEETRGAPFTVHR WHPLGQPPKKDADP" misc_feature complement(173788..174447) /locus_tag="AGROH133_03135" /note="putative phosphonate metabolism protein; Region: Phn_opern_protn; TIGR03223" /db_xref="CDD:163188" misc_feature complement(173812..174291) /locus_tag="AGROH133_03135" /note="Protein of unknown function (DUF1045); Region: DUF1045; pfam06299" /db_xref="CDD:114990" gene complement(174726..176075) /gene="phnE1" /locus_tag="AGROH133_03136" /db_xref="GeneID:10265921" CDS complement(174726..176075) /gene="phnE1" /locus_tag="AGROH133_03136" /note="ABC transporter transmembrane protein (phosphonate); ABC-type phosphate/phosphonate transport system, permease component" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter transmembrane protein" /protein_id="YP_004277475.1" /db_xref="GI:325291611" /db_xref="GeneID:10265921" /translation="MSSSFILNTADRERLTAAHPAIFNRGFMQRYGLLTGIVTVLVYL TACFFFFNVGPAFMQGRWDRASSYIQDWYSWRAQPRLRFEDGKVNPQWSSRMQYPADA PIDWLQPLPDGGYSVVYAGTQNRLDVTPTRVDVYVDGKNYPVIINGDKALAPEVLPQE ITQDGNKVLVHYGFAGQAEIRTSQVYVQRRFLGWANFLFDTKSEFWGKSYGDLAALAL WGERLDPTRSNISHMVDDFLDNGVWQHADILSKLMQTLVMAFVGTLFGTLVALPLAFL AARNITANRAANWGMKRLFDFLRSIDMLIWALFFTRSFGPGPIPGIAAIFFTDTGALG KVYAEALENVDDKQREGVKSVGASPIAVNRFGVLPQVLPVFISQSLYFWESNTRSATI IGAVGAGGIGLKLLEAMGTNADWDKVAYMVLLILFVVFLFDHISNSLRSRLIGKTQH" misc_feature complement(174741..175577) /gene="phnE1" /locus_tag="AGROH133_03136" /note="ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]; Region: COG3639" /db_xref="CDD:33437" misc_feature complement(<174945..175322) /gene="phnE1" /locus_tag="AGROH133_03136" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(174945..174947,174987..174989, 175038..175040,175047..175052,175062..175064, 175068..175073,175080..175082,175086..175088, 175092..175097,175143..175145,175149..175154, 175161..175190,175194..175205,175242..175244, 175257..175262,175269..175274)) /gene="phnE1" /locus_tag="AGROH133_03136" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(175143..175187) /gene="phnE1" /locus_tag="AGROH133_03136" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(174966..174968,174978..174983, 174999..175037)) /gene="phnE1" /locus_tag="AGROH133_03136" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(176075..177061) /gene="phnE2" /locus_tag="AGROH133_03141" /db_xref="GeneID:10265922" CDS complement(176075..177061) /gene="phnE2" /locus_tag="AGROH133_03141" /note="ABC transporter transmembrane protein (phosphonate); ABC-type phosphate/phosphonate transport system, permease component" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter transmembrane protein" /protein_id="YP_004277476.1" /db_xref="GI:325291612" /db_xref="GeneID:10265922" /translation="MATTLQHGTLTPEGLSASSRTVMRHYQQQLRTRRIYTVMSLVIF LIVLAASLNFANEANSGKFFERLPYFFDFMKTFVPDSPLEVFRAMFDLPSPYDNGSLK YNYVADRVYITNGFYIPHFIYQLIITLNIALVSTIIGTTFAFVLCFFASTNLIGAGLV RWVVRRVMEILRAFPEIVVAGLLTAILSIGPIAAIIAISVHTIGALGKLFFEVVENAD MKADEGLRAAGANWLERVRFAIVPQVLPNFVSYALLRAEINVRASTIIGAVGGGGIGE VFRLSIGNDHASKTYAIIILLLITIIAVDQFSSWLRRRLIGHQSFEFGRGAA" misc_feature complement(176117..176965) /gene="phnE2" /locus_tag="AGROH133_03141" /note="phosphonate ABC transporter, permease protein PhnE; Region: PhnE; TIGR01097" /db_xref="CDD:188108" misc_feature complement(<176297..176689) /gene="phnE2" /locus_tag="AGROH133_03141" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(176300..176302,176309..176314, 176354..176356,176405..176407,176414..176419, 176432..176437,176510..176512,176516..176521, 176528..176557,176561..176572,176609..176611, 176624..176629,176636..176641)) /gene="phnE2" /locus_tag="AGROH133_03141" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(176510..176554) /gene="phnE2" /locus_tag="AGROH133_03141" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(176333..176335,176345..176350, 176366..176404)) /gene="phnE2" /locus_tag="AGROH133_03141" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(177131..178036) /gene="phnD" /locus_tag="AGROH133_03147" /db_xref="GeneID:10265923" CDS complement(177131..178036) /gene="phnD" /locus_tag="AGROH133_03147" /note="ABC transporter substrate-binding protein (phosphonate); ABC-type phosphate/phosphonate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter substrate-binding protein" /protein_id="YP_004277477.1" /db_xref="GI:325291613" /db_xref="GeneID:10265923" /translation="MLKKILLSAVALGVLAGSAMAQDVKVLRIGLDGSENEADQIRNT KCVADGLKAATGVSEVQVFPSPDYNGVIQGLLGGTIDIASMGASSYAKIAIADPKAVD PILTYTGSDGSSGYYTIMVARKDSGIKSLADAKGKKIGFADPDSTSGFLVPNVSIPKE TGVPVKEYFSETGFGGGHENLVLAVLDKKFDVGTTFGSGVGKWEEGYSGGNLHQMVKK GNLDMDDIVQVWKSPLIPNGPLLVANKIGDSMKQKVEDFFMELPKKDLACFQGYTQGK NTAYIKVDPAFYQTIIDARKSVIGG" misc_feature complement(177137..177976) /gene="phnD" /locus_tag="AGROH133_03147" /note="phosphonate ABC transporter, periplasmic phosphonate binding protein; Region: PhnD; TIGR03431" /db_xref="CDD:132472" misc_feature complement(177254..177976) /gene="phnD" /locus_tag="AGROH133_03147" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(178122..178982) /gene="phnC" /locus_tag="AGROH133_03149" /db_xref="GeneID:10265924" CDS complement(178122..178982) /gene="phnC" /locus_tag="AGROH133_03149" /EC_number="3.6.3.28" /note="ABC transporter nucleotide-binding protein/ATPase (phosphonate); ABC-type phosphate/phosphonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277478.1" /db_xref="GI:325291614" /db_xref="GeneID:10265924" /translation="MSFHLKQVTRRFGNHTAVDSVNVEIPQGQMVGVIGRSGAGKSTL LRMINRLVDPSSGSIHFNDTEVSSLKGAALRNWQRDCAMIFQQFNLVPRLDVLTNVML GRLNHRSTVLSLFNIFTDEERLMAIAALERLGIEHVAMQAAGTLSGGQQQRVAIARAL MQSPKMVLADEPIASLDPLNAKIVMDALRDINEREGITVITNLHTLDTARNYCERIIG MSQGRVVFDGTPAELTAAAVTEIYGTDSHGAGIDETMTSTSINIPGAQLAARPVQQSA GPEPLALAGL" misc_feature complement(178200..178982) /gene="phnC" /locus_tag="AGROH133_03149" /note="ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: COG3638" /db_xref="CDD:33436" misc_feature complement(178257..178970) /gene="phnC" /locus_tag="AGROH133_03149" /note="ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all...; Region: ABC_PhnC_transporter; cd03256" /db_xref="CDD:73015" misc_feature complement(178857..178880) /gene="phnC" /locus_tag="AGROH133_03149" /note="Walker A/P-loop; other site" /db_xref="CDD:73015" misc_feature complement(order(178371..178373,178470..178475, 178725..178727,178854..178862,178866..178871)) /gene="phnC" /locus_tag="AGROH133_03149" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73015" misc_feature complement(178725..178736) /gene="phnC" /locus_tag="AGROH133_03149" /note="Q-loop/lid; other site" /db_xref="CDD:73015" misc_feature complement(178518..178547) /gene="phnC" /locus_tag="AGROH133_03149" /note="ABC transporter signature motif; other site" /db_xref="CDD:73015" misc_feature complement(178470..178487) /gene="phnC" /locus_tag="AGROH133_03149" /note="Walker B; other site" /db_xref="CDD:73015" misc_feature complement(178452..178463) /gene="phnC" /locus_tag="AGROH133_03149" /note="D-loop; other site" /db_xref="CDD:73015" misc_feature complement(178365..178385) /gene="phnC" /locus_tag="AGROH133_03149" /note="H-loop/switch region; other site" /db_xref="CDD:73015" gene complement(179219..179836) /locus_tag="AGROH133_03150" /db_xref="GeneID:10265925" CDS complement(179219..179836) /locus_tag="AGROH133_03150" /EC_number="2.3.1.-" /note="Trimeric LpxA-like; Acetyltransferase (isoleucine patch superfamily)" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004277479.1" /db_xref="GI:325291615" /db_xref="GeneID:10265925" /translation="MSVKVGLEPVVHESARVTNSSIGRYTEISERCRIEEVEMGDYSY VMQDGAIWCATIGKFVNIAASVRINATNHPMSRATLHHFTYRARNYWDDADDENDFFA ARRAKRVVIGHDVWIGHGATILPGVTIGNGAVIGAGAVVSKDVAPYTIVGGVPARLIR NRFPADLGQRMDDLKWWDWDHATLRGALDDFRTLAAEDFVAKYAG" misc_feature complement(179225..179836) /locus_tag="AGROH133_03150" /note="phosphonate metabolim protein, transferase hexapeptide repeat family; Region: phn_thr-fam; TIGR03308" /db_xref="CDD:132351" misc_feature complement(179297..179731) /locus_tag="AGROH133_03150" /note="Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and...; Region: LbH_XAT; cd03349" /db_xref="CDD:100040" misc_feature complement(order(179351..179353,179375..179377, 179423..179425,179480..179482,179489..179491, 179495..179497,179585..179587,179591..179593, 179600..179602,179615..179620,179654..179656, 179705..179707,179711..179713)) /locus_tag="AGROH133_03150" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100040" misc_feature complement(order(179360..179362,179372..179374, 179378..179383,179387..179389,179411..179413, 179426..179431,179480..179482,179489..179491, 179579..179584,179612..179614,179618..179623, 179699..179701,179705..179707)) /locus_tag="AGROH133_03150" /note="active site" /db_xref="CDD:100040" misc_feature complement(order(179579..179584,179621..179623, 179699..179701,179705..179707)) /locus_tag="AGROH133_03150" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100040" misc_feature complement(order(179360..179362,179372..179374, 179378..179383,179387..179389,179411..179413, 179426..179431,179465..179467,179480..179482, 179489..179491,179528..179530,179612..179614, 179618..179620)) /locus_tag="AGROH133_03150" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100040" gene complement(179833..180600) /gene="phnL" /locus_tag="AGROH133_03151" /db_xref="GeneID:10265926" CDS complement(179833..180600) /gene="phnL" /locus_tag="AGROH133_03151" /note="ABC transporter nucleotide-binding protein/ATPase (phosphonate); ABC-type phosphonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="phosphonate ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277480.1" /db_xref="GI:325291616" /db_xref="GeneID:10265926" /translation="MIRANPTRNCLFPPFCRFDVMPTPLIVSEVFKSFTMHLRDGIEL PVVRDVSFSVSGGECVVLGGPSGIGKSSILKMLYGNYAIDSGQILIRHEDQVIDMGSA SPRTILEIRHRTIGYVSQFLRTVPRVPAIDVVAEPLFARKVAAEEAREQAAVLLSKLN LPRELWSLPPATFSGGEQQRVNIARGFITDHAILLLDEPTASLDAANRRVVVEMIAEK KRKGTALLGIFHDEEVREAVADRVLDVSQFSPRKAAA" misc_feature complement(179836..180540) /gene="phnL" /locus_tag="AGROH133_03151" /note="ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: PhnL; COG4778" /db_xref="CDD:34390" misc_feature complement(179860..180528) /gene="phnL" /locus_tag="AGROH133_03151" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(180388..180411) /gene="phnL" /locus_tag="AGROH133_03151" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(179911..179913,180007..180012, 180241..180243,180385..180393,180397..180402)) /gene="phnL" /locus_tag="AGROH133_03151" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(180241..180252) /gene="phnL" /locus_tag="AGROH133_03151" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(180055..180084) /gene="phnL" /locus_tag="AGROH133_03151" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(180007..180024) /gene="phnL" /locus_tag="AGROH133_03151" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(179989..180000) /gene="phnL" /locus_tag="AGROH133_03151" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(179905..179925) /gene="phnL" /locus_tag="AGROH133_03151" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(180545..181321) /gene="phnK" /locus_tag="AGROH133_03152" /db_xref="GeneID:10265927" CDS complement(180545..181321) /gene="phnK" /locus_tag="AGROH133_03152" /note="ABC-type phosphonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="phosphonate C-P lyase system protein PhnK" /protein_id="YP_004277481.1" /db_xref="GI:325291617" /db_xref="GeneID:10265927" /translation="MSDAPLLKVRDVSKYYGDRAGCRNVSFELYPGEVLAIVGESGSG KTTLLNCISTRLVPTAGSVEYRMRDGSVRDLYHMGEAERRFLMRTDWGFVHQNPADGL RMAVSAGANVGERLMAVGNRHYGNIRQSASEWLERVEIGTDRIDDQPRAFSGGMRQRL QIARNLVTSPRLVFMDEPTGGLDVSVQARLLDLVRGLVNDLGLAVIVVTHDLAVARLL SHRMMVMKGGDVIEHGLTDRVLDDPREPYTQLLVSSILQV" misc_feature complement(180548..181321) /gene="phnK" /locus_tag="AGROH133_03152" /note="phosphonate C-P lyase system protein PhnK; Provisional; Region: phnK; PRK11701" /db_xref="CDD:183280" misc_feature complement(180620..181306) /gene="phnK" /locus_tag="AGROH133_03152" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(181184..181207) /gene="phnK" /locus_tag="AGROH133_03152" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(180692..180694,180791..180796, 181034..181036,181181..181189,181193..181198)) /gene="phnK" /locus_tag="AGROH133_03152" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(181034..181045) /gene="phnK" /locus_tag="AGROH133_03152" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(180839..180868) /gene="phnK" /locus_tag="AGROH133_03152" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(180791..180808) /gene="phnK" /locus_tag="AGROH133_03152" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(180773..180784) /gene="phnK" /locus_tag="AGROH133_03152" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(180686..180706) /gene="phnK" /locus_tag="AGROH133_03152" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature complement(<180557..180631) /gene="phnK" /locus_tag="AGROH133_03152" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene complement(181318..182220) /gene="phnJ" /locus_tag="AGROH133_03153" /db_xref="GeneID:10265928" CDS complement(181318..182220) /gene="phnJ" /locus_tag="AGROH133_03153" /note="Phosphonate metabolism protein PhnJ; Uncharacterized enzyme of phosphonate metabolism" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277482.1" /db_xref="GI:325291618" /db_xref="GeneID:10265928" /translation="MLKEVSFDDGLAAYNFAYLDEQTKRMIRRAILKAIAIPGYQVPF ASREMPMPYGWGTGGVQVTAAILGPDDVLKVIDQGADDTTNAVSIRAFFQKVADVAVT TRTKDATIIQTRHRIPEEELHSGQVLVYQVPIPEPLRFLEPRETETRVMHALEEYGLM HVKLYEDIARNGRISTTYAYPVKVAGRYVMDPSPTPKFDNPKMHLSDALQLFGAGREK RIYAVPPYTDVVSLDFEDHPFEIQSFDKPCALCGGENVYLDEVVLDDKGGRMFVCSDT DHCEDRRAHGHKGHLLADVKEAAE" misc_feature complement(181360..182187) /gene="phnJ" /locus_tag="AGROH133_03153" /note="Phosphonate metabolism protein PhnJ; Region: PhnJ; cl01457" /db_xref="CDD:154413" gene 182257..182352 /locus_tag="AGROH133_03154" /db_xref="GeneID:10265929" CDS 182257..182352 /locus_tag="AGROH133_03154" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277483.1" /db_xref="GI:325291619" /db_xref="GeneID:10265929" /translation="MEIGILAAVFFAAFAALTVFCAYWFGEQHSR" gene complement(182354..183463) /gene="phnI" /locus_tag="AGROH133_03156" /db_xref="GeneID:10265930" CDS complement(182354..183463) /gene="phnI" /locus_tag="AGROH133_03156" /note="Bacterial phosphonate metabolism protein; Uncharacterized enzyme of phosphonate metabolism" /codon_start=1 /transl_table=11 /product="phosphonate metabolism protein" /protein_id="YP_004277484.1" /db_xref="GI:325291620" /db_xref="GeneID:10265930" /translation="MYVAVKGGETAIANAHRLLADKRRGDRDLPAMTVAQIVSQLSLA VDRVMAEASLYDQSLAALAVKQSRGDMIEAIFLLRAYRTTLPRFGYSVPVDTAKMTVQ RRVSATYKDLPGGQLLGPTFDYTHRLLDPSLLEDGAVEIPAIREGETEYVMRVSDILA EEGLIESDGDMPDDHVAGDLTREPIEFPMARDLRLQSLARGDEGFLLALAYSTQRGYG RTHPFVGEIRIGEVEVELDVPELGFAVSLGDIKVTECQMVNQFKGSAKAPPQFTRGYG LVFGQSERKAMAMSLVDRALRAAEFGEDMVAPAQDEEFVISHADNVQATGFVEHLKLP HYVDFQAELGLVRKMRADFDATDTHAGEWMSDAAE" misc_feature complement(182399..183463) /gene="phnI" /locus_tag="AGROH133_03156" /note="Bacterial phosphonate metabolism protein (PhnI); Region: PhnI; cl01456" /db_xref="CDD:154412" gene complement(183465..184073) /gene="phnH" /locus_tag="AGROH133_03157" /db_xref="GeneID:10265931" CDS complement(183465..184073) /gene="phnH" /locus_tag="AGROH133_03157" /note="Bacterial phosphonate metabolism protein; Uncharacterized enzyme of phosphonate metabolism" /codon_start=1 /transl_table=11 /product="carbon-phosphorus lyase complex subunit" /protein_id="YP_004277485.1" /db_xref="GI:325291621" /db_xref="GeneID:10265931" /translation="MGVKAEALTGGFSDAVFDSQRIFKKLMDGMARPGTAQTIETTVA PPLPLGAASGAVLLALCDHDTPVWLSGALRKTTVPGWIGFHTGAVTTEEKSAAHFAVI EAGSAIASFGLFAQGSQEYPDRSTTVIIELPDLDGGRELLLSGPGIRHINIISPSGLP DIFPRLWAENNAIFPRGIDVILTAGDKFVCLPRTTRIQPVEA" misc_feature complement(183477..184061) /gene="phnH" /locus_tag="AGROH133_03157" /note="Bacterial phosphonate metabolism protein (PhnH); Region: PhnH; cl01455" /db_xref="CDD:186432" gene complement(184073..184534) /gene="phnG" /locus_tag="AGROH133_03158" /db_xref="GeneID:10265932" CDS complement(184073..184534) /gene="phnG" /locus_tag="AGROH133_03158" /note="Phosphonate metabolism protein PhnG; Uncharacterized enzyme of phosphonate metabolism" /codon_start=1 /transl_table=11 /product="Phosphonate metabolism protein" /protein_id="YP_004277486.1" /db_xref="GI:325291622" /db_xref="GeneID:10265932" /translation="MNNEAANSHAERKRVVALLARATVQELEAVWSRQDASPQTENVR GPETGLVMVKGRIGGGGAPFNLGETTVTRATVKLASGTVGHAHVLGTGRKKAWYAAVF DALWQENPTRGFIETELLSPVEKRLAEEKDRKTKETAATRVDFFTMVRGED" misc_feature complement(184076..184507) /gene="phnG" /locus_tag="AGROH133_03158" /note="Phosphonate metabolism protein PhnG; Region: PhnG; cl01454" /db_xref="CDD:163981" gene 184617..185354 /gene="phnF" /locus_tag="AGROH133_03159" /db_xref="GeneID:10265933" CDS 184617..185354 /gene="phnF" /locus_tag="AGROH133_03159" /note="C_P_lyase_phnF: phosphonates metabolism transcriptional regulator PhnF; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004277487.1" /db_xref="GI:325291623" /db_xref="GeneID:10265933" /translation="MSPSAAMKRKNGVALWRQIADRIRGEIAAGDHDETGMLPPEMTL AEKFGVNRHTVRSAIAALASEGILEARQGRGTMIARKERLSFPISLRTRFTAGISDQV KDMQALLLSHTTEPANADLAARLQLQPGAPLVRLETLRKADSRPVSRSTTWFPADRFS GIGEAYQKSGSITAAFEMLGVADYVRISTVISASHADTQDLADLELSPGAILLVTQAL NADMDGIPVQYAISRFSADTVEFTVEN" misc_feature 184635..185351 /gene="phnF" /locus_tag="AGROH133_03159" /note="phosphonates metabolism transcriptional regulator PhnF; Region: C_P_lyase_phnF; TIGR02325" /db_xref="CDD:131378" misc_feature 184659..184853 /gene="phnF" /locus_tag="AGROH133_03159" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(184662..184664,184731..184733,184737..184742, 184764..184778,184782..184787,184794..184796, 184824..184829,184833..184844) /gene="phnF" /locus_tag="AGROH133_03159" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 184914..185336 /gene="phnF" /locus_tag="AGROH133_03159" /note="UTRA domain; Region: UTRA; cl06649" /db_xref="CDD:195338" gene complement(185377..186204) /gene="dapB" /locus_tag="AGROH133_03161" /db_xref="GeneID:10265934" CDS complement(185377..186204) /gene="dapB" /locus_tag="AGROH133_03161" /EC_number="1.3.1.26" /note="catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis" /codon_start=1 /transl_table=11 /product="Dihydrodipicolinate reductase" /protein_id="YP_004277488.1" /db_xref="GI:325291624" /db_xref="GeneID:10265934" /translation="MSGSDMKLVVVGAAGRMGQALIRLIHQTPGVTLHATVAREGSAF VGRDAGEIAGLGPIGIKITSDPLQAFLHAEGVIDFTSPATSVTFAGLAAQARIVHVIG TTGCSLGDEEKFKAASRHARIVKSGNMSLGVNLLSVLTQQAAKALDAQNWDIEILEMH HKHKVDAPSGTALLLGEAAAAGRKVDLATSSVRVRDGHTGAREAGTIGFATLRGGSVI GEHSVIFAGEGERVELSHYAGDRSIFARGAIAAAVWAFDKKPGFYSMLDVLGLSQAE" misc_feature complement(185392..186189) /gene="dapB" /locus_tag="AGROH133_03161" /note="dihydrodipicolinate reductase; Provisional; Region: PRK00048" /db_xref="CDD:178822" misc_feature complement(185818..186189) /gene="dapB" /locus_tag="AGROH133_03161" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(185398..185811) /gene="dapB" /locus_tag="AGROH133_03161" /note="Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173" /db_xref="CDD:191215" gene complement(186320..187354) /gene="glk" /locus_tag="AGROH133_03162" /db_xref="GeneID:10265935" CDS complement(186320..187354) /gene="glk" /locus_tag="AGROH133_03162" /EC_number="2.7.1.2" /note="catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate" /codon_start=1 /transl_table=11 /product="Glucokinase" /protein_id="YP_004277489.1" /db_xref="GI:325291625" /db_xref="GeneID:10265935" /translation="MEQVMPKTSDTEYLSFPILLGDIGGTNARFSILIDSFAEPVHLT TVKTAEYPTIDDAIQQAVLDKTSLQPVSTILAIAGPIEGDEIPLTNCHWVVKPKDMLA KLGLKDVIVINDFEAQALAIAALDDDNRDSIGSGKKDMLASRVVLGPGTGLGVAGLVY ARHMWFPVPGEGGHIDIGPRSARDYAVFPHIETIEGRIAGEQILCGRGLVNLYRAICT ADGIEPIFSDPADITSQGLSGQNPQAKETLSLFSTYLGRVAGDLALIFMAKGGVYLAG GISQKIVPALKSPEFRAAFEDKAPHSALMRSIPTFVVTHPQAALSGLATYARTPSDFG LSLDGRRWRA" misc_feature complement(186365..187312) /gene="glk" /locus_tag="AGROH133_03162" /note="FGGY family of carbohydrate kinases, N-terminal domain; Region: FGGY_N; cl09121" /db_xref="CDD:195797" misc_feature complement(186374..187291) /gene="glk" /locus_tag="AGROH133_03162" /note="Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940" /db_xref="CDD:32123" gene complement(187364..187747) /gene="mgsA" /locus_tag="AGROH133_03163" /db_xref="GeneID:10265936" CDS complement(187364..187747) /gene="mgsA" /locus_tag="AGROH133_03163" /EC_number="4.2.3.3" /note="catalyzes the formation of methylglyoxal from glycerone phosphate" /codon_start=1 /transl_table=11 /product="methylglyoxal synthase" /protein_id="YP_004277490.1" /db_xref="GI:325291626" /db_xref="GeneID:10265936" /translation="MAGQRCIALIAHDEKKDDMADFARHHQKALSGFKIVATGTTGGR VQEACPGLSVIRLKSGPLGGDQQIGAMIATGEVDMLIFFTDPLTAMPHDVDVKALTRL ATVYDIPMALNRATAENLIDFNLAE" misc_feature complement(187385..187729) /gene="mgsA" /locus_tag="AGROH133_03163" /note="Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to...; Region: MGS; cd01422" /db_xref="CDD:29634" misc_feature complement(order(187472..187474,187553..187555, 187568..187573,187625..187630,187634..187636, 187700..187702,187718..187720)) /gene="mgsA" /locus_tag="AGROH133_03163" /note="active site" /db_xref="CDD:29634" misc_feature complement(order(187391..187393,187400..187411, 187418..187435,187439..187447,187454..187456, 187463..187465,187490..187492,187529..187531, 187547..187552,187562..187567,187571..187576, 187628..187630,187709..187711)) /gene="mgsA" /locus_tag="AGROH133_03163" /note="dimer interfaces [polypeptide binding]; other site" /db_xref="CDD:29634" misc_feature complement(order(187472..187474,187553..187555)) /gene="mgsA" /locus_tag="AGROH133_03163" /note="catalytic residues [active]" /db_xref="CDD:29634" gene complement(187849..188898) /gene="mepA" /locus_tag="AGROH133_03164" /db_xref="GeneID:10265937" CDS complement(187849..188898) /gene="mepA" /locus_tag="AGROH133_03164" /EC_number="3.4.99.-" /note="D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; forms a dimer in periplasm; Murein endopeptidase" /codon_start=1 /transl_table=11 /product="penicillin-insensitive murein endopeptidase" /protein_id="YP_004277491.1" /db_xref="GI:325291627" /db_xref="GeneID:10265937" /translation="MTAGSSRVFKAAMLAISVVSALQLQTQIASAEDRPAKEVFGHID LPSANSSQPIGSYAKGCQSGAIAMPADGPTWQAMRLSRNRNWGQPQLISFLERFSQDA QKIGWPGLLLGDISQPRGGPMLTGHASHQIGLDVDVWWRPMPNPRLTVQQRETLPFIS MLDKSKFLTVDDRKWSPLNARLVMMAASYPQVERVFVNPAIKQKLCQTWTGDRTFMGK IRPIYGHDEHFHIRLECPPGAPNCKPQAEVGKGDGCDKSLAWWFTKEPWAPPKKDPNA KPVKPRQVMVSDLPAACAAVAAAPSANTEGFAAQAYSPAQAVRQQGVEQIIQNAPAIQ PPADIPLPTQRPTLN" misc_feature complement(188056..188868) /gene="mepA" /locus_tag="AGROH133_03164" /note="Murein endopeptidase [Cell envelope biogenesis, outer membrane]; Region: MepA; COG3770" /db_xref="CDD:33565" misc_feature complement(188053..188796) /gene="mepA" /locus_tag="AGROH133_03164" /note="Penicillin-insensitive murein endopeptidase; Region: Peptidase_M74; cl01538" /db_xref="CDD:186449" gene 189105..190949 /locus_tag="AGROH133_03166" /db_xref="GeneID:10265938" CDS 189105..190949 /locus_tag="AGROH133_03166" /note="ABC transporter substrate-binding protein (peptide); ABC-type oligopeptide transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="peptide ABC transporter substrate-binding protein" /protein_id="YP_004277492.1" /db_xref="GI:325291628" /db_xref="GeneID:10265938" /translation="MKLAPLKSRLLVALAASAMLMPAAASAQSADVWRKGISTVGELK HPDGFDHFDYVNTKAPKGGTLRLSTSGTFDTLNPLLAKGEAATGLSLVFDTLMKSTEE ELSASYGLLAEGVSFPDDISKATFRLRAEAKWADGKPVTPEDVVFSFEKAKDLSPQLA TYYTHVTKAEVTGERDITFTFDEKNNRELPQIVGQLLIVPKHWWEGVGPDGKPRDISR GTLEPVMGSGPYKIASLSPGSTMTYERRDDYWGKDINVNVGQHNFKTITYTFFADQDV EFQAFKSGTVDFRQEASSSRWVTGYDFPAVKEGRVTKEELPNIYRAVGIMQAFVPNMR REKFQNPKLRKALNYAFDFEELNRTLAYGQFQRINSFFMGSELASSGLPTGRELEILQ ELKDQVPPEVFTTEYSNPVAGEPAKQRDNLREAVKLMKEAGYELRGNRMVNAASGQPL DMEFLIDSSGMERTILPYVQNLKKIGVNATIRTVDASQYTNRTRSFDFDVAVKLWATS ANPGNEQADFWGSAAADRQGSNNLAGIKNPAVDALVRKVIFAPNRNEQVAAARALDRV LLANSYVIPQFYRGEMFIAYWNTLIRPENLPQYGVGFPEAWWSSQAAN" misc_feature 189198..190934 /locus_tag="AGROH133_03166" /note="ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166" /db_xref="CDD:33908" misc_feature 189246..190883 /locus_tag="AGROH133_03166" /note="The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_14; cd08497" /db_xref="CDD:173862" gene 191092..192186 /locus_tag="AGROH133_03168" /db_xref="GeneID:10265939" CDS 191092..192186 /locus_tag="AGROH133_03168" /note="ABC transporter transmembrane protein (peptide); ABC-type uncharacterized transport system, permease component" /codon_start=1 /transl_table=11 /product="peptide ABC transporter transmembrane protein" /protein_id="YP_004277493.1" /db_xref="GI:325291629" /db_xref="GeneID:10265939" /translation="MGAYILRRLALMIPTIIGIMGISFLVIQFAPGGPVEQVVAQLTG QGDSASDRLSGGGDLMGQSGGFDESGSKYRGAQGLDPELIAKLEKQFGFDKPPLTRFL EMMWNYIRFDFGDSFFRNSSVIDLIIDKLPVSMSLGFWILIISYMISIPLGIKKAVSD GSTFDIWTSGIIIIGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLNWWQK IIDYFWHLTLPLIALSLSAFATTTLLTKNSFIDEIKKQYVVTARAKGLSERKVLYGHV FRNAMLIVIAGFPGAFISAFFTGSLLIENIFSLDGLGRLGYLSVVNRDYPIVFGTLFI FSLMGLVVSLLSDLIYTWIDPRIDFERRDV" misc_feature 191092..192162 /locus_tag="AGROH133_03168" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" misc_feature 191482..192123 /locus_tag="AGROH133_03168" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(191530..191535,191542..191547,191560..191562, 191593..191604,191608..191637,191644..191649, 191653..191655,191797..191802,191806..191808, 191812..191814,191821..191826,191830..191832, 191842..191847,191854..191856,191905..191907, 191947..191952,191959..191961,191983..191994, 192001..192006,192040..192045,192073..192078, 192085..192090,192094..192099,192106..192111, 192118..192123) /locus_tag="AGROH133_03168" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(191611..191655,191983..192000) /locus_tag="AGROH133_03168" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(191653..191655,191782..191784,192001..192003, 192034..192036,192043..192045,192073..192075) /locus_tag="AGROH133_03168" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(191857..191895,191911..191916,191926..191928) /locus_tag="AGROH133_03168" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 192186..193331 /locus_tag="AGROH133_03176" /db_xref="GeneID:10265940" CDS 192186..193331 /locus_tag="AGROH133_03176" /note="ABC transporter transmembrane protein (peptide); ABC-type uncharacterized transport system, permease component" /codon_start=1 /transl_table=11 /product="peptide ABC transporter transmembrane protein" /protein_id="YP_004277494.1" /db_xref="GI:325291630" /db_xref="GeneID:10265940" /translation="MTLAHTAATETLVKPKRPWFSPTTKRRWQNFKANRRGYWSFWLF LILFFLSLIAEFIANDKPIFASYKGEFLVPVMVDYPEEKFGGFLAQTDYKSSFIQDEI NANGWMIWPPIRYSYQTVNSNIPHSAPTAPFWLMDEKDRCSAYPQGNADPGCTLGNLN WLGTDNQARDVTARMIYGFRISVLFGLTLTIASALVGVTAGAIQGYFGGWTDLLLQRF IEIWSSMPVLYILLIIAAILPPGFFVLLGIMLLFSWVGFVGIVRAEFLRARNFEYVRA ARALGVGNWTIMFRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGE MIAQGKNNLQAPWLGLTAFFTMSIMLSLLIFVGEAVRDAFDPRKTFR" misc_feature 192234..193325 /locus_tag="AGROH133_03176" /note="ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4239" /db_xref="CDD:33962" misc_feature 192720..193271 /locus_tag="AGROH133_03176" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(192768..192773,192780..192785,192798..192800, 192828..192839,192843..192863,192864..192866, 192939..192944,192948..192950,192954..192956, 192963..192968,192972..192974,192984..192989, 192996..192998,193047..193049,193089..193094, 193101..193103,193122..193133,193140..193145, 193185..193190,193218..193220,193224..193226, 193233..193238,193242..193247,193254..193259, 193266..193271) /locus_tag="AGROH133_03176" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(192846..192863,192864..192866,193122..193139) /locus_tag="AGROH133_03176" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(192864..192866,192924..192926,193140..193142, 193179..193181,193188..193190,193218..193220) /locus_tag="AGROH133_03176" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(192999..193037,193053..193058,193068..193070) /locus_tag="AGROH133_03176" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 193337..194977 /locus_tag="AGROH133_03183" /db_xref="GeneID:10265941" CDS 193337..194977 /locus_tag="AGROH133_03183" /note="ABC transporter nucleotide-binding protein/ATPase (peptide); ABC-type uncharacterized transport system, duplicated ATPase component" /codon_start=1 /transl_table=11 /product="peptide ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277495.1" /db_xref="GI:325291631" /db_xref="GeneID:10265941" /translation="MMETKTQPLLSVRDLSVAFHQGGATSIAVDHVSFDLMPGEVVAL VGESGSGKSVTANSILKLLPYPAASHPSGKILFDGKDMLTLPERALRAVRGNDITMIF QEPMTSLNPLHTIERQIGEILELHQAITGAEARARTLELLLQVGIREPEKRLKAYPHE LSGGQRQRVMIAMALANRPKLLIADEPTTALDVTVQAQILELLSDLKNRHGMSMLFIT HDLGIVRKFADRVCVMTKGKIVETGTVEQVFTDPQHAYTRHLLAAEPKGEPPLSDASK PVVMQGDDIKVWFPIKAGLMRKVFDHVKAVDGIDITLRAGQTVGVVGESGSGKTTLGL ALSRLIASEGRISFIGQSIDSYSYEMMKPLRNRLQVVFQDPYGSLSPRMSVGEIVAEG LKVHERQLSADERDTRVAQALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPRF VMLDEPTSALDMSVQAQVVDLLRDLQARHELAYLFISHDLKVVKALANDVIVMRNGKV VESGPAAEIFADPQQEYTKALLAAAFNIEAVETKAVSQ" misc_feature 193346..194947 /locus_tag="AGROH133_03183" /note="ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]; Region: COG4172" /db_xref="CDD:33913" misc_feature 193361..194065 /locus_tag="AGROH133_03183" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 193472..193495 /locus_tag="AGROH133_03183" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(193481..193486,193490..193498,193643..193645, 193889..193894,193991..193993) /locus_tag="AGROH133_03183" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 193634..193645 /locus_tag="AGROH133_03183" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 193817..193846 /locus_tag="AGROH133_03183" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 193877..193894 /locus_tag="AGROH133_03183" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 193901..193912 /locus_tag="AGROH133_03183" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 193979..193999 /locus_tag="AGROH133_03183" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature 194054..>194167 /locus_tag="AGROH133_03183" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" misc_feature 194171..194872 /locus_tag="AGROH133_03183" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 194303..194326 /locus_tag="AGROH133_03183" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(194312..194317,194321..194329,194453..194455, 194696..194701,194798..194800) /locus_tag="AGROH133_03183" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 194444..194455 /locus_tag="AGROH133_03183" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 194624..194653 /locus_tag="AGROH133_03183" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 194684..194701 /locus_tag="AGROH133_03183" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 194708..194719 /locus_tag="AGROH133_03183" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 194786..194806 /locus_tag="AGROH133_03183" /note="H-loop/switch region; other site" /db_xref="CDD:73016" gene 195032..196327 /gene="dadA" /locus_tag="AGROH133_03184" /db_xref="GeneID:10265942" CDS 195032..196327 /gene="dadA" /locus_tag="AGROH133_03184" /EC_number="1.4.99.1" /note="glycine/D-amino acid oxidases (deaminating)" /codon_start=1 /transl_table=11 /product="D-amino acid dehydrogenase" /protein_id="YP_004277496.1" /db_xref="GI:325291632" /db_xref="GeneID:10265942" /translation="MPTHVAGTRYANGLNAMAADVIVLGAGIIGVSVALQLARRGKSV VLVDRRGPGEETSFGNAGLIQREGVVPYAFPQEVSRLLRYSLNNSIDARYHLSALPKI APFLGRYWYNSAATRHAAIARAYAPLIEHSVSEHSILIDEAKAGDLIVKNGWMEAYRT AERRDADFAFAERLARDHGISHTKLDGAELAAAEPHLSRDFVGGLKWNDPWSVRDPHA LTLAYVRLFESLGGTFVRGDASTLSQTTSGWTVRTETGAMEAEHAVVALGPWADTVTE RLGYRFPLGVKRGYHMHYAPQEGTKLNNWLIDAERGYFLAPMRKGIRLTTGAEFAERD APKSPVQIERAERVARTVFPLGGRLDAEPWMGARPCTPDMMPIIGKAPRHRTLWFSFG HAHHGLTLGPITGRVLAETMLGETPVIAIDAYRPERFNP" misc_feature 195080..196324 /gene="dadA" /locus_tag="AGROH133_03184" /note="Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:31009" misc_feature 195092..196318 /gene="dadA" /locus_tag="AGROH133_03184" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" gene 196566..197924 /gene="glnA" /locus_tag="AGROH133_03186" /db_xref="GeneID:10265943" CDS 196566..197924 /gene="glnA" /locus_tag="AGROH133_03186" /EC_number="6.3.1.2" /codon_start=1 /transl_table=11 /product="Glutamine synthetase" /protein_id="YP_004277497.1" /db_xref="GI:325291633" /db_xref="GeneID:10265943" /translation="MDDIEKAKKFFDDNPDIEILEAFVIDANGVPRGKWIPRERAIDV LEKGMAIPRSVYALDIWGRDVHAAGLAEGTGDPDGFCFPVPGTLSRVTWLGRPTAQVL LAMKNPDGTGFYGDPRNVLARVLEAYKKAGLTPVVATELEFYLIDPVRSALDPVRPPH SREGRWHTGQTQVLSISELQDFEDVFHDIATACRAQGVLADTTLRENGPGQYEINLNH VPDALRAADFAVFLKRIVKGVARRHDLDATFMAKPYGLQAGNGMHVHFSVLDSDGRNI YAGENGPSDALMHSVGGLLENMGESMAIFAPHANSYRRLTPSEHAPTYASWGIDNRSA AVRVITASKAATRIEHRVAGADTNPYLVVAMILSAALAGMKEKRQPGGAISGDSHAIN HEPLPTNWDYALQRFTRSSFAYATLGQRYRTLFSACKQQELSEFSLRVTDVEYDAYIR TV" misc_feature 196581..197918 /gene="glnA" /locus_tag="AGROH133_03186" /note="Glutamine synthetase [Amino acid transport and metabolism]; Region: GlnA; COG0174" /db_xref="CDD:30523" misc_feature 196908..197672 /gene="glnA" /locus_tag="AGROH133_03186" /note="Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120" /db_xref="CDD:189401" gene 197926..199227 /gene="ordL" /locus_tag="AGROH133_03187" /db_xref="GeneID:10265944" CDS 197926..199227 /gene="ordL" /locus_tag="AGROH133_03187" /EC_number="1.-.-.-" /note="FAD dependent oxidoreductase; glycine/D-amino acid oxidases (deaminating)" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="YP_004277498.1" /db_xref="GI:325291634" /db_xref="GeneID:10265944" /translation="MAEVTTIPNPGHTSSWYAASANVKSVRPTLEGAMEADVCVIGGG FTGISAALELSERGYSVIVLEGVRVGFGASGRNGGQIVNGYSRDLETIASRYGHDKAV KLGEMSLEGGEIIRSRISKYAIDCDLVDGGFFAAFTTKQIREMEAHKAHWEKHGHGGL EMVSKADVGKYVRTDRYAGGMIDRFGGHIHPLNLVQGEAAAAESLGARIFENSRVISL EQGVNPVVRTATGSVKAKYVLVCGNAYLGKLLPEIGDRMMPVSSQVMATEPLDADLIE QLLPANYCVEDANYILDYYRRTSDNRLLYGGGIGYGGSDPADLTGVIRPNMLKTFPQL EKTKIDFAWSGNFALTLTRIPHMGKLSDNVYFSHGDSGHGVTTTHLLGKILGEAVAGH AERFDVWSSLPNYPFPGGKTFRVPLTVLGAWWYGLRDRLGF" misc_feature 198007..199098 /gene="ordL" /locus_tag="AGROH133_03187" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" misc_feature 198019..199164 /gene="ordL" /locus_tag="AGROH133_03187" /note="Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:31009" gene complement(199224..199733) /gene="gntK" /locus_tag="AGROH133_03188" /db_xref="GeneID:10265945" CDS complement(199224..199733) /gene="gntK" /locus_tag="AGROH133_03188" /EC_number="2.7.1.12" /note="Carbohydrate kinase, thermoresistant glucokinase; Gluconate kinase" /codon_start=1 /transl_table=11 /product="gluconokinase" /protein_id="YP_004277499.1" /db_xref="GI:325291635" /db_xref="GeneID:10265945" /translation="MTKAIVVMGVSGSGKSTVAEELAEKLGIAFIEGDKLHPKSNVDK MSEGIPLTDEDRWPWLDLIGAELRKGNENNGVVVSCSALKKIYRDRLREATGGPLAFV YLDGSLELLSRRMGERKGHFMPLSLLQTQLATLEVPTGEPGVVTVSIDATPEEITANA LSGLKAVIF" misc_feature complement(199287..199721) /gene="gntK" /locus_tag="AGROH133_03188" /note="Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits; Region: GntK; cd02021" /db_xref="CDD:30194" misc_feature complement(199236..199712) /gene="gntK" /locus_tag="AGROH133_03188" /note="Gluconate kinase [Carbohydrate transport and metabolism]; Region: GntK; COG3265" /db_xref="CDD:33076" misc_feature complement(order(199380..199382,199392..199394, 199632..199634,199638..199640,199686..199709)) /gene="gntK" /locus_tag="AGROH133_03188" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:30194" misc_feature complement(order(199380..199382,199698..199703)) /gene="gntK" /locus_tag="AGROH133_03188" /note="Gluconate-6-phosphate binding site [chemical binding]; other site" /db_xref="CDD:30194" gene complement(199821..200561) /locus_tag="AGROH133_03189" /db_xref="GeneID:10265946" CDS complement(199821..200561) /locus_tag="AGROH133_03189" /note="ABC transporter transmembrane protein (proline/glycine/betaine); ABC-type proline/glycine betaine transport systems, permease component" /codon_start=1 /transl_table=11 /product="proline/glycine/betaine ABC transporter transmembrane protein" /protein_id="YP_004277500.1" /db_xref="GI:325291636" /db_xref="GeneID:10265946" /translation="MKNAASFFAPGLLVLALMAFLAAPQVFAPIFRPLVQTNAPAIYT QANLLSLTLSHLTIVAIATGLATLVAGALAVLVTRPFGADFLPLSRSIVNIGQTFPPV AVLALAVPMIGFGEKPTLIALFLYALLPVFENTLTGLTTLPPTVMDAAKGAGMTGWQR LVKVELPLALPAILAGIRLSAVISLSTATIGSTVAARTLGEVIIAGLQSNNLAFILQG GLIVAVLAILIHASFSALEKAAARKTGH" misc_feature complement(199824..200489) /locus_tag="AGROH133_03189" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene complement(200558..201496) /locus_tag="AGROH133_03196" /db_xref="GeneID:10265947" CDS complement(200558..201496) /locus_tag="AGROH133_03196" /note="ABC transporter nucleotide-binding protein/ATPase (proline/glycine/betaine); ABC-type oligopeptide transport system, ATPase component" /codon_start=1 /transl_table=11 /product="proline/glycine/betaine ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277501.1" /db_xref="GI:325291637" /db_xref="GeneID:10265947" /translation="MIEIDTITKRYGDTVVVDQVSLTVAPRTVTVIVGTSGSGKTTLL RMINRLVEPTSGTIRIDGDDVSTMPGYKLRRQIGYAIQGHGLFPHRTVAENIATVPQL IGWDRKRIDAKIDALMQLFQLDPALYANRFPHELSGGQQQRVGVARALAAEPNILLMD EPFGALDPVIRAKAQNDLLDIQKKLGVTIVLVTHDMDEAFHLADRIAVMDKGRIVQDC PPAELVLKPATNFVRTMIGENERALKLLSVLSVADVVEPGSAEGEPLNEHTSQRDALS AMLWAGCDTLPVLKDDGKPAGIVRRDVLLQRAAGTP" misc_feature complement(200573..201496) /locus_tag="AGROH133_03196" /note="ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]; Region: OpuBA; COG1125" /db_xref="CDD:31322" misc_feature complement(200777..201493) /locus_tag="AGROH133_03196" /note="OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family...; Region: ABC_OpuCA_Osmoprotection; cd03295" /db_xref="CDD:73054" misc_feature complement(201374..201397) /locus_tag="AGROH133_03196" /note="Walker A/P-loop; other site" /db_xref="CDD:73054" misc_feature complement(order(200915..200917,201014..201019, 201251..201253,201371..201379,201383..201388)) /locus_tag="AGROH133_03196" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73054" misc_feature complement(201251..201262) /locus_tag="AGROH133_03196" /note="Q-loop/lid; other site" /db_xref="CDD:73054" misc_feature complement(201062..201091) /locus_tag="AGROH133_03196" /note="ABC transporter signature motif; other site" /db_xref="CDD:73054" misc_feature complement(201014..201031) /locus_tag="AGROH133_03196" /note="Walker B; other site" /db_xref="CDD:73054" misc_feature complement(200996..201007) /locus_tag="AGROH133_03196" /note="D-loop; other site" /db_xref="CDD:73054" misc_feature complement(200909..200929) /locus_tag="AGROH133_03196" /note="H-loop/switch region; other site" /db_xref="CDD:73054" gene complement(201493..202659) /locus_tag="AGROH133_03197" /db_xref="GeneID:10265948" CDS complement(201493..202659) /locus_tag="AGROH133_03197" /note="ABC transporter transmembrane protein (proline/glycine/betaine); ABC-type proline/glycine betaine transport systems, permease component" /codon_start=1 /transl_table=11 /product="proline/glycine/betaine ABC transporter transmembrane protein" /protein_id="YP_004277502.1" /db_xref="GI:325291638" /db_xref="GeneID:10265948" /translation="MTKWPDKVGVLISCLLLYALAASPFMTFRANRIIQGETRTIFEA LPVAVATLLVAIIIVAAFIAFFRFPAHLKLAAALVGLAALAIFVGQAASALTPEGNSF ARVSPASGFWLMFAGLALLAADCIARLQPKPTLRILLLLVATGTLAAVLTSGLWDDLS IIKEYTGRADIFWTEALRHVELAIGSLVAATLAGIPLGILCYKIERLRSGLLNALNIV QTIPSIALFGLLIAPLGWMAANVPGAAKIGIAGIGMAPAFVALFLYSLLPVVSNTVVG LSGVSQAVREAARGLGMTPPQRLLRVEFPLAMPVILTGIRIVLVQNIGLATIAALIGG GGFGVFVFQGIGQTAMDLVLLGTVPTVLLGFAAAITLDALIDSNLFSAGGRQKA" misc_feature complement(<201700..202134) /locus_tag="AGROH133_03197" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(201709..201711,201718..201723, 201763..201765,201814..201816,201823..201828, 201838..201840,201844..201849,201856..201858, 201862..201864,201868..201873,201967..201969, 201973..201978,201985..202014,202018..202029, 202069..202074,202081..202086)) /locus_tag="AGROH133_03197" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(201967..202011) /locus_tag="AGROH133_03197" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(201742..201744,201754..201759, 201775..201813)) /locus_tag="AGROH133_03197" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(202747..203658) /locus_tag="AGROH133_03209" /db_xref="GeneID:10265949" CDS complement(202747..203658) /locus_tag="AGROH133_03209" /note="ABC transporter substrate-binding protein (proline/glycine/betaine); Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)" /codon_start=1 /transl_table=11 /product="proline/glycine/betaine ABC transporter substrate-binding protein" /protein_id="YP_004277503.1" /db_xref="GI:325291639" /db_xref="GeneID:10265949" /translation="MNRLMMLTGAGFALALSVSFAQAQVVVSSKIDTEGGVLGNIILA VLNKNNIETTDRIQLGATPVVRKAITAGEIDIYPEYTGNAAFFFSKADDPLWKDAAKA YQEAKTLDYDANKIVWLTPSPANNTWAIALRKDVADKNNLKTLSDFGKYIAGGGEVVL AASSEFVNSAAALPAFQTTYGFTMKPDQLITLSGGDTAATIAAAANQTNNANAAMVYG TDGGIAPSGLVVLEDDKHVQPVYQPAPIIREEVLKKNPNIETLLKPVFEKLDLATLQE LNARVQVGGEQAKAVATDFLTKNGFLK" misc_feature complement(202762..203571) /locus_tag="AGROH133_03209" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(202765..203571) /locus_tag="AGROH133_03209" /note="Substrate binding domain of ABC-type glycine betaine transport system; Region: OpuAC; pfam04069" /db_xref="CDD:146609" gene complement(203800..204846) /locus_tag="AGROH133_03211" /db_xref="GeneID:10265950" CDS complement(203800..204846) /locus_tag="AGROH133_03211" /note="Putative ammonia monooxygenase" /codon_start=1 /transl_table=11 /product="ammonia monooxygenase" /protein_id="YP_004277504.1" /db_xref="GI:325291640" /db_xref="GeneID:10265950" /translation="MIIKPEFHTFALTALVGSMGALLASLLNVPAPFLSGPALAVTIT GLAGVKLGIPAFIRNACFVVVGISMGTSVTPSVIDAAKTWPLSFVIVLVAVVIMLYVA YWILHYGFGYDRTTAMLGASPGHLSYIISLGAETKSDLATVSIVQSVRVLALTLSVPL IVEYFDLVSTEPLIANPPIGLFTLALTIGASLAMGWLFLRWRFPAALLLGGVAVSIGT HITGLTEGGVPSWLSLPVYVLIGCLIGTRFSNVSLMDVRKGFLAGFVVTIAVMVIAGS IAWMISNITGVPLNAVMIAYSPGGLETMAAMAVMMHADTAYVGSHHVLRLLFLSVLMP LVMGKDARKRDGEI" misc_feature complement(203806..204846) /locus_tag="AGROH133_03211" /note="Putative ammonia monooxygenase [General function prediction only]; Region: AbrB; COG3180" /db_xref="CDD:32993" misc_feature complement(204352..204816) /locus_tag="AGROH133_03211" /note="membrane protein AbrB duplication; Region: Gneg_AbrB_dup; TIGR03082" /db_xref="CDD:188278" misc_feature complement(203839..204294) /locus_tag="AGROH133_03211" /note="membrane protein AbrB duplication; Region: Gneg_AbrB_dup; TIGR03082" /db_xref="CDD:188278" gene complement(205017..205487) /gene="aau3" /locus_tag="AGROH133_03223" /db_xref="GeneID:10265951" CDS complement(205017..205487) /gene="aau3" /locus_tag="AGROH133_03223" /note="rhizobial iron regulator; in Sinorhizobium meliloti mutations in this gene affect the expression of a number of iron-responsive operons; Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="iron-responsive transcriptional regulator" /protein_id="YP_004277505.1" /db_xref="GI:325291641" /db_xref="GeneID:10265951" /translation="MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKI LQPLNKAGLVETVRGRNGGVRLGKPAEKISLFDVVKVTEDSFAMAECFEDGAVECPLV DSCGLNSALRKALNAFFDVLAEYSIDDLVKARPQINFLLGIDTEMPKIAALPAA" misc_feature complement(205032..205487) /gene="aau3" /locus_tag="AGROH133_03223" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(205092..205487) /gene="aau3" /locus_tag="AGROH133_03223" /note="Rrf2 family protein; Region: rrf2_super; TIGR00738" /db_xref="CDD:129821" gene 205661..206710 /locus_tag="AGROH133_03225" /db_xref="GeneID:10265952" CDS 205661..206710 /locus_tag="AGROH133_03225" /note="ABC transporter substrate-binding protein (iron); ABC-type Fe3+ transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="iron ABC transporter substrate-binding protein" /protein_id="YP_004277506.1" /db_xref="GI:325291642" /db_xref="GeneID:10265952" /translation="MASLKSCFSAAVFSGLTILSAAPAAFAGGEVNVYSYRQPELIQP LLDAFTKETGIEANVLFLDKGLVERIQAEGVNSPADVLLTVDIARLVEAKEGGVTQPV LNDPVIEKDIPANLRDPQGEWFGLTTRGRVVYASKERVTQKDITYEELADPKWKGKIC IRDGQHSYNIALIASMIAHHGVDYTRTWLTGLKNNLARKPDGTDRSQAKSIFSGECDI ALGNTYYVGLMLTNDREPEEKVWAGSVRVIFPNAGDRGTHVNISGMALTKYAPNKDNA LKLMEFLASREAQEIYAKQVFEYPVLPGAEPSDVVKGFGPINPDKLPLTDIAAHRKQA SELVDEVGFNDGPTN" misc_feature 205670..206656 /locus_tag="AGROH133_03225" /note="ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]; Region: TbpA; COG4143" /db_xref="CDD:33896" misc_feature 205793..206692 /locus_tag="AGROH133_03225" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(206789..208285) /gene="mmsA" /locus_tag="AGROH133_03228" /db_xref="GeneID:10265953" CDS complement(206789..208285) /gene="mmsA" /locus_tag="AGROH133_03228" /EC_number="1.2.1.27" /note="NAD-dependent aldehyde dehydrogenases" /codon_start=1 /transl_table=11 /product="methylmalonate-semialdehyde dehydrogenase" /protein_id="YP_004277507.1" /db_xref="GI:325291643" /db_xref="GeneID:10265953" /translation="MREIGHFINGKHVSGTSGRTSNVYNPATGEVQATVALASDAELR AAVESAKAAQPKWAATNPQRRARVFFKFVELLNRDMNELAVLLSSEHGKTVEDSKGDI VRGLEVCEFVCGIPHLQKGEFTEGAGPAIDMYSIRQPVGIGAGITPFNFPGMIPMWMF APAIACGNAFILKPSERDPSLPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTDPDI GAVSFVGSTPIARYVYGTAAMNGKRAQCFGGAKNHMIIMPDADLDQAVNALMGAGYGS AGERCMAVSVAVPVGEETANRLVEKLIPQIEALKIGPYTDDKADMGPLVTKEAQTRVK GLIDSGVEQGAKLLVDGRDFKLQGYEDGYFVGGCLFDHVTPDMDIYKTEIFGPVLSVV RAKNYEDALELPMKHEYGNGVAIYTRDGDAARDFASRINIGMIGINVPIPVPLAYHSF GGWKASSFGDLNQHGTDSIKFWTKTKTITSRWPSGIKSGAEFVMPTMK" misc_feature complement(206840..208276) /gene="mmsA" /locus_tag="AGROH133_03228" /note="Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085" /db_xref="CDD:143404" misc_feature complement(206852..208237) /gene="mmsA" /locus_tag="AGROH133_03228" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(order(206840..206845,206849..206866, 206885..206887,206927..206929,206933..206935, 206945..206947,206972..206983,206987..206989, 206993..206998,207005..207007,207014..207019, 207023..207028,207032..207034,207557..207559, 207563..207565,207572..207574,207581..207583, 207593..207595,207872..207874,207881..207883, 207890..207892,207905..207928,207953..207958, 207965..207967,208064..208066,208076..208078, 208085..208087,208097..208099,208103..208105)) /gene="mmsA" /locus_tag="AGROH133_03228" /note="tetrameric interface [polypeptide binding]; other site" /db_xref="CDD:143404" misc_feature complement(order(207053..207055,207131..207133, 207137..207139,207443..207445,207539..207547, 207599..207601,207608..207619,207668..207670, 207758..207760,207767..207769,207812..207814, 207836..207847)) /gene="mmsA" /locus_tag="AGROH133_03228" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143404" misc_feature complement(order(207443..207445,207452..207454, 207545..207547,207836..207838)) /gene="mmsA" /locus_tag="AGROH133_03228" /note="catalytic residues [active]" /db_xref="CDD:143404" gene 208461..208775 /locus_tag="AGROH133_03229" /db_xref="GeneID:10265954" CDS 208461..208775 /locus_tag="AGROH133_03229" /note="Dimeric alpha-beta barrel; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277508.1" /db_xref="GI:325291644" /db_xref="GeneID:10265954" /translation="MSDEPVVRMAEIEIDPTQLDAYRRLLAEEIEASVSLEIGVLALN AVAIKGSPEKIRILEVYADRAAYEAHLQTPHFLKYKEGVAGMVTSLTLLDVEPIMLRS KP" misc_feature 208473..208703 /locus_tag="AGROH133_03229" /note="Antibiotic biosynthesis monooxygenase; Region: ABM; cl10022" /db_xref="CDD:195949" gene 208772..209653 /locus_tag="AGROH133_03230" /db_xref="GeneID:10265955" CDS 208772..209653 /locus_tag="AGROH133_03230" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004277509.1" /db_xref="GI:325291645" /db_xref="GeneID:10265955" /translation="MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTSLEQALK TQLFIRRTNGCELTEEGQLFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLG VSFLAPRLGRLTARYPDLKIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDY SLGLYASKSYLSEYGTPADVETLKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEIS SATGQTEAVRSGAGIGILHNYIAGQYPELLRIMPHMSISRSYWTAYHESARQLVRVRT VVDFLQELVAEEKRMFA" misc_feature 208772..209641 /locus_tag="AGROH133_03230" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 208778..208957 /locus_tag="AGROH133_03230" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 209042..209614 /locus_tag="AGROH133_03230" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(209090..209095,209099..209104,209111..209113, 209123..209125,209129..209149,209411..209428, 209444..209449,209453..209458) /locus_tag="AGROH133_03230" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 209770..210690 /locus_tag="AGROH133_03232" /db_xref="GeneID:10265956" CDS 209770..210690 /locus_tag="AGROH133_03232" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277510.1" /db_xref="GI:325291646" /db_xref="GeneID:10265956" /translation="MPNILRKLSPTGLGVAVMLLGMLLFALNDAMGKWLVSTYSQGQV ILIRSVAALVILVPIVWKGGLSGLMKIERPSLQVARVFFSTAELFCFYFAVAALPLAD VMTYWLAAPIYVAALSPFLLGEKVGWRRWTAIAIGFVGVLIALQPSSASLTSAALFSI LGSAAFAFMMLSGRQLRNTPDTVLAFWQIIGAGLAGLVAVFVTPSGWLPVQSGFDLAF LGLLGVVAMAAHVLVNRALKLADAATVAPLQYTLLLWAVVFGWLFFGDVPQTSIVVGA GLIVLSGLYIFFRENTLKRGREKVDILAAD" misc_feature <210307..210612 /locus_tag="AGROH133_03232" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene 210998..212104 /locus_tag="AGROH133_03244" /db_xref="GeneID:10265957" CDS 210998..212104 /locus_tag="AGROH133_03244" /note="Protein of unknown function DUF475; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277511.1" /db_xref="GI:325291647" /db_xref="GeneID:10265957" /translation="MSAAQKTTLSYFKWAFIVTIVGLILGGYLGWEMTGTVSGTATIF FICAVLAVLEISLSFDNAIVNANKLKEMTPVWQHRFLTWGILIAVFGMRIVFPLLIVV VAANVGPWTALVMAATQPERYAEIMRDAHLPIAAFGGTFLMMVGLNFFFDHEKDVHWV RWIEEKAAVYSSVKGIEIAFVLVVMLAFSRIIGASDNPELGPVAANTFFHAAIWGLLT FLLVEVVGGILDRSQEVLEGAAKGGFGAFLYLEVLDASFSFDGVIGAFALTQNLFIIA IGLGIGAMYVRSMTIMLVEKGTLAEYRYLEHGAFYAILILSVIMYVQTMFHIPEVITG LGGATLIGISLWSSIRHNRRHNADATDAARGAEI" misc_feature 211016..212077 /locus_tag="AGROH133_03244" /note="Integral membrane protein TerC family; Region: TerC; cl10468" /db_xref="CDD:189213" gene 212473..212817 /locus_tag="AGROH133_03255" /db_xref="GeneID:10265958" CDS 212473..212817 /locus_tag="AGROH133_03255" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_004277512.1" /db_xref="GI:325291648" /db_xref="GeneID:10265958" /translation="MPAELSPTEALGLWHRVSAAQVTADAPDLTLRQTTILLQIYLVP PPHTVRGLAALLGVTKPVITRALDSLGALGLVDRVRDERDKRNVVIKRTVAGALYLEK FGDLIIDQARKI" misc_feature <212605..>212781 /locus_tag="AGROH133_03255" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 212835..213686 /locus_tag="AGROH133_03257" /db_xref="GeneID:10265959" CDS 212835..213686 /locus_tag="AGROH133_03257" /note="NlpC/P60 family; Cell wall-associated hydrolases (invasion- associated proteins)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277513.1" /db_xref="GI:325291649" /db_xref="GeneID:10265959" /translation="MMLDRRLNVFRSDLADEKLQGVVQAERFVSGSPAQIAVPVIGLR PTPDLAAGIDTELLFGETVRIFDRANGWAWVQADADGYAGYVPETAIGDVVAVTHQVV APRTFLYPSAELRKPPVAAISMGSMVRIVGEAETRGTRYLLTEKGEGIIAAHCRPVDA ALEEDYVAVALRFIETPYLWGGRSGFGIDCSGLVQLSMAMTGRRVLRDTDMQVKSLGV EIERDELRRGDLVFWKGHVGLMENEETLLHANGHTMNVARENLNEAIERIGWLYEKPT AFRRLEG" misc_feature 213360..>213587 /locus_tag="AGROH133_03257" /note="NlpC/P60 family; Region: NLPC_P60; cl11438" /db_xref="CDD:196233" gene 213781..214140 /locus_tag="AGROH133_03258" /db_xref="GeneID:10265960" CDS 213781..214140 /locus_tag="AGROH133_03258" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277514.1" /db_xref="GI:325291650" /db_xref="GeneID:10265960" /translation="MNTKMATRLAAILAAVLMSASAQAQTVFQNGFAPAPDAYANLPG VKDPRTLQPKVRYNCHSELSVTGYARGPYRDVFGSRGLPVQGYRCTDENGISSFGGRN PISKDWYPGINPVDPTF" gene 214299..215603 /gene="pncB" /locus_tag="AGROH133_03260" /db_xref="GeneID:10265961" CDS 214299..215603 /gene="pncB" /locus_tag="AGROH133_03260" /EC_number="2.4.2.11" /note="catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; Nicotinic acid phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="nicotinate phosphoribosyltransferase" /protein_id="YP_004277515.1" /db_xref="GI:325291651" /db_xref="GeneID:10265961" /translation="MTKTDIATRVHNHTWKLDPIVRSLIDTDFYKLLMLQMIWKLYPE VDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFE PEFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDTTLWEIPALAIINELRSRSAMRSL GYFTLDVLYARAKAKMWEKVERLRELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGP AFTGTSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEELAAAPYQVLKDWNRLYGGN LLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEWWQKMGRDPRKKML IFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAPKTIASLKPISIVCKVSD ANGRPAVKLSDNPQKATGERSEVERYLKFFGEEDLKEQKVLV" misc_feature 214329..215585 /gene="pncB" /locus_tag="AGROH133_03260" /note="Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]; Region: PncB; COG1488" /db_xref="CDD:31677" misc_feature 214362..215525 /gene="pncB" /locus_tag="AGROH133_03260" /note="Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate...; Region: PRTase_typeII; cl12019" /db_xref="CDD:187164" misc_feature order(214884..214892,214965..214970,215217..215219, 215307..215312,215379..215381,215385..215390, 215397..215399) /gene="pncB" /locus_tag="AGROH133_03260" /note="active site" /db_xref="CDD:29612" gene complement(215668..217062) /locus_tag="AGROH133_03261" /db_xref="GeneID:10265962" CDS complement(215668..217062) /locus_tag="AGROH133_03261" /EC_number="3.4.11.1" /note="Leucyl aminopeptidase" /codon_start=1 /transl_table=11 /product="leucine aminopeptidase" /protein_id="YP_004277516.1" /db_xref="GI:325291652" /db_xref="GeneID:10265962" /translation="MAPYQFIERPTPFSSKAGSTLPVFAVTPAHIEQGAIDPVALDWA KKAGFKAEAGAVLLVPSSDGSLGGVLLGLGGNPSEIPFITGKLARELPEGEWHIETAP LTANRLALGFGLGSYRFDKYKTTKTSGAKLLIPQDAEDGEIKRVLAGVFLARDLINVP ANDMGPDELEIAFRSLAAHYKAKVGVITGDDLLKENFPLIHAVGRASESAPRLLEMNW GKKGNPRLTLVGKGVCFDTGGLDIKPAASMALMKKDMGGAANVLGLALMIMDAKLPVN LRVLVPAVENSISANAFRPGDIYRSRKGLTVQIDNTDAEGRLVLADALAYADEDAPDL MIDMATLTGAARVALGPDLPPFYTDDDDLAHDIAEASIDTDDPLWRMPLYMGYDKDIR SRAADITNAPSGGMAGSITAALFLKRFVTNTKKWAHFDIYGWSLSERHHSSIGGEAQG IRALFHYITHQFAK" misc_feature complement(215689..216837) /locus_tag="AGROH133_03261" /note="Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein...; Region: Peptidase_M17; cd00433" /db_xref="CDD:48344" misc_feature complement(order(215731..215733,215833..215835, 215839..215844,215872..215874,215878..215880, 215893..215898,215902..215904,215917..215919, 215923..215928,216004..216006,216013..216027, 216133..216135,216145..216147,216151..216153, 216169..216183,216187..216189,216193..216204, 216208..216210,216304..216309,216316..216318, 216325..216327,216340..216342,216358..216360, 216439..216441,216445..216447,216577..216585, 216589..216591,216829..216831)) /locus_tag="AGROH133_03261" /note="interface (dimer of trimers) [polypeptide binding]; other site" /db_xref="CDD:48344" misc_feature complement(order(216040..216042,216112..216114, 216118..216120,216124..216126,216301..216303, 216334..216336,216355..216357,216370..216372)) /locus_tag="AGROH133_03261" /note="Substrate-binding/catalytic site; other site" /db_xref="CDD:48344" misc_feature complement(order(216118..216120,216124..216126, 216301..216303,216355..216357,216370..216372)) /locus_tag="AGROH133_03261" /note="Zn-binding sites [ion binding]; other site" /db_xref="CDD:48344" gene 217205..218029 /locus_tag="AGROH133_03262" /db_xref="GeneID:10265963" CDS 217205..218029 /locus_tag="AGROH133_03262" /note="Uncharacterised conserved protein UCP035836; Flp pilus assembly protein TadD, contains TPR repeats" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277517.1" /db_xref="GI:325291653" /db_xref="GeneID:10265963" /translation="MTAFSLSETGRTGLLRGACLAALVFAVSGCASTNKPDRMSTGSI PAATRSYDHMNMDQLRQAEETAGKAYERSPKDRSVGMNYANVLMMTGKNTQALAVMQQ IAIANPSDREVLAAYGKAQAASGQLEQALSTIQRAQTPDRPDWRLYSAEGAVLDQLGR SNDARTKYRQALDLKPNDPSVLSNLGMSYVLSSDPRTAETYLQSAIAQPGADSRVRQN LALVVGLQGRFAEAERIAVQELSPQQAQANLGYLRAMLSQQNSWQQLAKKDNKPAG" misc_feature 217244..218008 /locus_tag="AGROH133_03262" /note="Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]; Region: TadD; COG5010" /db_xref="CDD:34615" misc_feature 217355..217633 /locus_tag="AGROH133_03262" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(217355..217360,217445..217450,217454..217459, 217466..217471,217547..217552,217559..217564, 217571..217576) /locus_tag="AGROH133_03262" /note="binding surface" /db_xref="CDD:29151" misc_feature order(217388..217390,217400..217402,217409..217411, 217454..217456,217490..217492,217502..217504, 217511..217513,217556..217558,217592..217594, 217604..217606,217613..217615) /locus_tag="AGROH133_03262" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature 217538..217825 /locus_tag="AGROH133_03262" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature order(217538..217543,217547..217552,217559..217564, 217649..217654,217658..217663,217670..217675, 217751..217756,217763..217768,217775..217780) /locus_tag="AGROH133_03262" /note="binding surface" /db_xref="CDD:29151" misc_feature order(217556..217558,217592..217594,217604..217606, 217613..217615,217658..217660,217694..217696, 217706..217708,217715..217717,217760..217762, 217796..217798,217808..217810,217817..217819) /locus_tag="AGROH133_03262" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(218128..219114) /gene="ctpI" /locus_tag="AGROH133_03263" /db_xref="GeneID:10265964" CDS complement(218128..219114) /gene="ctpI" /locus_tag="AGROH133_03263" /note="Flp pilus assembly protein TadC" /codon_start=1 /transl_table=11 /product="components of type IV pilus" /protein_id="YP_004277518.1" /db_xref="GI:325291654" /db_xref="GeneID:10265964" /translation="MTGSLFSSLTDPQTIIAILVTLAVFATLYTLIMPLFERKDFAKR MKAVSSERDLIRSRERERLAAATRDGKASLRGNNNKSARRIVEKFNLQEALADKNTMN KLRAAGFRSQNALNTFLAARFVLPFVFLALAFTWVFVLGNLADKAFVVRLMAVLIFGY LGFYAPNIYVSNAMNKRQASIRRAWPDALDLMLICIESGVSMEAAMRRVAEEMGEQSP ELAEEMMLTTAELSFLQDRRIALENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRV LAQEGRDERMNEAEKKAAALPPKLTVPMIIFFLPVLIAVILGPAGIRVADTF" misc_feature complement(218131..219093) /gene="ctpI" /locus_tag="AGROH133_03263" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene complement(219125..220129) /gene="ctpH" /locus_tag="AGROH133_03268" /db_xref="GeneID:10265965" CDS complement(219125..220129) /gene="ctpH" /locus_tag="AGROH133_03268" /note="Flp pilus assembly protein TadB" /codon_start=1 /transl_table=11 /product="components of type IV pilus" /protein_id="YP_004277519.1" /db_xref="GI:325291655" /db_xref="GeneID:10265965" /translation="MDPTILLLAALVAISAGALAYAFLFQQIEVEKKTTSRVKRVKAA ETDHANIKAARDRVQELGKRRKSMQDSLREMEKKQSEKAKKAKNVGLREKLVQAGLQL SVRQFHLLSAGAAAFSVVIALLYGLSLLIALLIGAVVALGLPRWVLGFILKRRQKKFL EEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGIGIPQGIER MMLTVPLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVNALSMEAKAS AVIIGALPFIVMLLVHFTSPDYLSVLFTDMRGHIILGVSGLWMLIGIFIMRQMINFDI " misc_feature complement(219128..220060) /gene="ctpH" /locus_tag="AGROH133_03268" /note="Bacterial type II secretion system protein F domain; Region: GSPII_F; cl00906" /db_xref="CDD:154078" gene complement(220248..221720) /gene="ctpG" /locus_tag="AGROH133_03274" /db_xref="GeneID:10265966" CDS complement(220248..221720) /gene="ctpG" /locus_tag="AGROH133_03274" /note="Flp pilus assembly protein, ATPase CpaF" /codon_start=1 /transl_table=11 /product="component of type IV pilus" /protein_id="YP_004277520.1" /db_xref="GI:325291656" /db_xref="GeneID:10265966" /translation="MFGKRGPEGPARTIKPDFVAPAIQQVKATPEPRSLAIDTLEPGQ SPATRQAQSPMQSPQKKRARTEDYYNTKGQVFSALIDTIDLSQLAKLDAESAREEIRD IVNDIITIKNFAMSIAEQEELLEDICNDVLGYGPLEPLLARDDIADIMVNGSGQTFIE VGGKTIESDIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLA IDGPALTIRKFKKDKLTLDQLVRFGAITPEGATLLKIIGRVRCNVVISGGTGSGKTTL LNCLTSFIDKDERVITCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLIKNCLRM RPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTLHANTPRECLSRIESMIAMGGFTLPA KTVREIISGSIDIVIQAQRLRDGSRRITQITEVIGMEGDVIVTQDLMRYEIDGEDAHG KLIGKHVSTGISKPHFWDRARYYGEEKRLATALDEMEKTS" misc_feature complement(220380..221459) /gene="ctpG" /locus_tag="AGROH133_03274" /note="Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]; Region: CpaF; COG4962" /db_xref="CDD:34569" misc_feature complement(220458..221015) /gene="ctpG" /locus_tag="AGROH133_03274" /note="Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial...; Region: VirB11-like_ATPase; cd01130" /db_xref="CDD:29996" misc_feature complement(order(220479..220481,220896..220913, 221004..221006)) /gene="ctpG" /locus_tag="AGROH133_03274" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29996" misc_feature complement(order(220899..220907,220917..220922)) /gene="ctpG" /locus_tag="AGROH133_03274" /note="Walker A motif; other site" /db_xref="CDD:29996" misc_feature complement(order(220488..220490,220590..220592, 220599..220601,220611..220619,220647..220652, 220659..220661,220671..220673,220710..220712, 220716..220724,220791..220796,220800..220811, 220830..220832,220854..220856,220911..220916)) /gene="ctpG" /locus_tag="AGROH133_03274" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:29996" misc_feature complement(220692..220709) /gene="ctpG" /locus_tag="AGROH133_03274" /note="Walker B motif; other site" /db_xref="CDD:29996" gene complement(221754..223040) /gene="ctpF" /locus_tag="AGROH133_03275" /db_xref="GeneID:10265967" CDS complement(221754..223040) /gene="ctpF" /locus_tag="AGROH133_03275" /note="CheY-like; Flp pilus assembly protein, ATPase CpaE" /codon_start=1 /transl_table=11 /product="components of type IV pilus" /protein_id="YP_004277521.1" /db_xref="GI:325291657" /db_xref="GeneID:10265967" /translation="MSAVEYDIKSSGDAEAEQPALRASDMDRLRPLPRISVHAFCVSE NMQRVIDALSSDRRMSKVTLRVTKGDINAAATMFSASPTPNLIVLETASSPASLLDDL APLAEVCDPTTRVIIVGRHNDITLYRDLIRNGISEYLVAPINMADLLASIATIFVDPE AEPLGRNIAFIGAKGGVGSSTIAHNCAFGISTLFSTETILADMDLAYGTANIDFDQDP AQGMAEAVFSPERLDEVFLDRLLTKCSDHLSLLAAPSLLDRTYDFDRQAFLPILEVLQ RSAPVAVLDLPHQWCDWTRAVLAEADEVVITAVPDLANLRNTKNLFDALIKLRPNDKL PHLVLNQVGMPKRPEIAPADFLDPLEIEPVAIIPFDTQLFGNAANSGRMISEMDEKSQ IAETFSQIAHTITGRTILRKNKRGGLDKLKNILKRK" misc_feature complement(221757..222659) /gene="ctpF" /locus_tag="AGROH133_03275" /note="Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]; Region: CpaE; COG4963" /db_xref="CDD:34570" misc_feature complement(<222396..222539) /gene="ctpF" /locus_tag="AGROH133_03275" /note="This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly...; Region: CpaE_like; cd03111" /db_xref="CDD:73340" misc_feature complement(222018..>222218) /gene="ctpF" /locus_tag="AGROH133_03275" /note="This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly...; Region: CpaE_like; cd03111" /db_xref="CDD:73340" gene complement(223075..223833) /gene="ctpE" /locus_tag="AGROH133_03276" /db_xref="GeneID:10265968" CDS complement(223075..223833) /gene="ctpE" /locus_tag="AGROH133_03276" /note="Pilus biogenesis CpaD; Type IV pili component" /codon_start=1 /transl_table=11 /product="components of type IV pilus" /protein_id="YP_004277522.1" /db_xref="GI:325291658" /db_xref="GeneID:10265968" /translation="MTTRARNPLFTASPVRAGNAMQENPSSFSSSLPGRRAGLVAMVT VTLAAGLLQGCARDPMTTNAIPDDYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADN VRGFAQNYASMSTGIVNIQMPSGSANSAAASKMARQIRSALSGAGVPSGKIMETRYAA SPNGDAAPIRLSYVAVTAMTGQCGQWPEDLSDNTFANKNWYNFGCASQSNLAAQVANP MDLVGPRGMSPIDAERRAVVIDAYRSGKNTATPN" misc_feature complement(223090..223740) /gene="ctpE" /locus_tag="AGROH133_03276" /note="Type IV pili component [Cell motility and secretion]; Region: COG5461; cl02279" /db_xref="CDD:164017" misc_feature complement(223099..223704) /gene="ctpE" /locus_tag="AGROH133_03276" /note="Pilus biogenesis CpaD protein (pilus_cpaD); Region: Pilus_CpaD; pfam09476" /db_xref="CDD:150221" gene complement(223830..225413) /gene="ctpD" /locus_tag="AGROH133_03277" /db_xref="GeneID:10265969" CDS complement(223830..225413) /gene="ctpD" /locus_tag="AGROH133_03277" /note="Flp pilus assembly protein, secretin CpaC" /codon_start=1 /transl_table=11 /product="component of type IV pilus" /protein_id="YP_004277523.1" /db_xref="GI:325291659" /db_xref="GeneID:10265969" /translation="MTGGSMAKRIKQHLHSSMAGSLAFCLAFSGIPGQHSPAFLRISE AEAQSASIVRITESGSGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADAVTRTSKR IYLFGKTVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVEIVSDN IVLTGSVRTPQDSARAVQLAEAFLKGGEATTRNISLTGGNNGGDAAIFAENRQTSQIV NMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSNNGFEFSNPSNLGNAISGA SRIASGAIGSGSLNFASYLNAMEQAGVVRTLAEPSLTAISGEQAKFYVGGDFRLPAEQ EVTIDKDTGQPTITRTTNTVDYGITLNFRPVVLSPGRISLKIETNVSEPTYEGNVVTG NAGRTIPGSTYMSIRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGISKVPIFG TLFRSKDFIRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYG RKDQVQAAPYQGSVGFIYK" misc_feature complement(223833..225338) /gene="ctpD" /locus_tag="AGROH133_03277" /note="Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]; Region: CpaC; COG4964" /db_xref="CDD:34571" misc_feature complement(224820..224981) /gene="ctpD" /locus_tag="AGROH133_03277" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" misc_feature complement(223989..224525) /gene="ctpD" /locus_tag="AGROH133_03277" /note="Bacterial type II and III secretion system protein; Region: Secretin; cl02829" /db_xref="CDD:164025" gene complement(225410..226216) /gene="ctpC" /locus_tag="AGROH133_03279" /db_xref="GeneID:10265970" CDS complement(225410..226216) /gene="ctpC" /locus_tag="AGROH133_03279" /note="SAF domain; Flp pilus assembly protein CpaB" /codon_start=1 /transl_table=11 /product="components of type IV pilus" /protein_id="YP_004277524.1" /db_xref="GI:325291660" /db_xref="GeneID:10265970" /translation="MKPSRIVILSVALVAAGLAGIVAMQISGAKQVIEKAETIIEKEP TVNVLVSSVNLPVGSRLNDSSVHWTPWPTGNVIDSFITEAKNPNAITELSGAVVRLPL FQGEPVRPEKVVDSSTRIMSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKG DSGHFLTENVLNNVRVLAIDQQIKEGEDGTSAVVGATATLELTPEQAKIITVAQQMAD RLTLALRSVADAQENDTLSAGYLLNGGSGQPEIQVIKSGSIVKAGQGASQ" misc_feature complement(225422..226216) /gene="ctpC" /locus_tag="AGROH133_03279" /note="SAF domain; Region: SAF; cl00555" /db_xref="CDD:193866" gene complement(226344..226856) /gene="ctpB" /locus_tag="AGROH133_03282" /db_xref="GeneID:10265971" CDS complement(226344..226856) /gene="ctpB" /locus_tag="AGROH133_03282" /EC_number="3.4.23.43" /note="components of type IV pilus, prepilin peptidase; Flp pilus assembly protein, protease CpaA" /codon_start=1 /transl_table=11 /product="components of type IV pilus, prepilin peptidase" /protein_id="YP_004277525.1" /db_xref="GI:325291661" /db_xref="GeneID:10265971" /translation="MVIAAIFLILPFCLAFAALNDLFSMTIPNRITLFLLLSFIVVAP FSGMDLQTFAMSIAAAAAVFFACFILFAANAMGGGDAKLLTAVTVWYGFNISLIEFLL AVTFIGGVLTLGILLLRSRSQEILAIGIPIPDSLMVVKKIPYGIGIAIAGLLTYGETP LVKAAIASLT" misc_feature complement(226359..226856) /gene="ctpB" /locus_tag="AGROH133_03282" /note="Type IV leader peptidase family; Region: Peptidase_A24; cl02077" /db_xref="CDD:154734" gene complement(226989..227177) /gene="ctpA" /locus_tag="AGROH133_03288" /db_xref="GeneID:10265972" CDS complement(226989..227177) /gene="ctpA" /locus_tag="AGROH133_03288" /note="Flp/Fap pilin component" /codon_start=1 /transl_table=11 /product="components of type IV pilus, pilin subunit" /protein_id="YP_004277526.1" /db_xref="GI:325291662" /db_xref="GeneID:10265972" /translation="MTKIFTRFLKDESGATAIEYGLIAALISVAIIGGATAVGTRLNA FFTALSQRINANAPAATN" misc_feature complement(227028..227156) /gene="ctpA" /locus_tag="AGROH133_03288" /note="Flp/Fap pilin component; Region: Flp_Fap; cl01585" /db_xref="CDD:120751" gene 227594..228004 /locus_tag="AGROH133_03290" /db_xref="GeneID:10265973" CDS 227594..228004 /locus_tag="AGROH133_03290" /note="Flp pilus assembly protein, secretin CpaC" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277527.1" /db_xref="GI:325291663" /db_xref="GeneID:10265973" /translation="MSSGKLAKIVVGLSVILSGSLQPVFAQEDILRVSMNHARVLRLD RPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPIVDERILVSIDEG NTVRVFRQTERTVLSCTPNCEQHSQNSGDKDAQP" misc_feature 227684..>227923 /locus_tag="AGROH133_03290" /note="Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]; Region: CpaC; COG4964" /db_xref="CDD:34571" gene complement(228245..228331) /locus_tag="AGROH133_03292" /db_xref="GeneID:10265974" tRNA complement(228245..228331) /locus_tag="AGROH133_03292" /product="tRNA-Leu" /db_xref="GeneID:10265974" gene complement(228452..228757) /locus_tag="AGROH133_03293" /db_xref="GeneID:10265975" CDS complement(228452..228757) /locus_tag="AGROH133_03293" /note="Selenoprotein W-related family; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="selenoprotein W-related protein" /protein_id="YP_004277528.1" /db_xref="GI:325291664" /db_xref="GeneID:10265975" /translation="MAETKPRITIRYCTQCNWLLRAGWMAQEILQTFASDIGEVSLIP STGGLFEITVDGETIWERKRDGGFPGPKELKQRIRDVIDPERDLGHVDRTKHEGLDN" misc_feature complement(228461..228757) /locus_tag="AGROH133_03293" /note="Rdx family; Region: Rdx; cl01407" /db_xref="CDD:194128" gene 228903..229352 /locus_tag="AGROH133_03294" /db_xref="GeneID:10265976" CDS 228903..229352 /locus_tag="AGROH133_03294" /note="DoxX; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277529.1" /db_xref="GI:325291665" /db_xref="GeneID:10265976" /translation="MAQFDNNRQRLFVPAVAPLYNSTHDLVETVLRVVAGLLLVTHGF GKIANPFGAVGMVESLGFYPGVFWSPLLAATEFFGGILVAIGLFTRPASFAAMIVLLV TVYFHGIVKAEGLGGAEKSVLWAAIFLFFAVRGGNRHSVDAKLSREF" misc_feature 228939..229343 /locus_tag="AGROH133_03294" /note="DoxX; Region: DoxX; cl00976" /db_xref="CDD:154119" gene 229491..230189 /gene="guaA1" /locus_tag="AGROH133_03300" /db_xref="GeneID:10265977" CDS 229491..230189 /gene="guaA1" /locus_tag="AGROH133_03300" /EC_number="6.3.5.2" /note="Glutamine amidotransferase class-I; GMP synthase - Glutamine amidotransferase domain" /codon_start=1 /transl_table=11 /product="GMP synthase" /protein_id="YP_004277530.1" /db_xref="GI:325291666" /db_xref="GeneID:10265977" /translation="MRVAIIENMAGTPHGQIGVALEEAGADVHVIRAYAGEPLPLDAA AHDALVVLGGEQNALDDVLYPYLPDLALLMKAFGDADKAVMGVCLGSQLLARAYGGEN ILAGPPEFGWEDVSLTEEGVSDPLLAGFDKTFPIFQWHCDTFTLPPEATRLATNGATR NQAFRVGRAAYGTQFHFEASTAVVDGWCEAFPASVEKMAPGWMNNYYDHRGGRADVAD ATGLEIARAWVRLV" misc_feature 229491..230090 /gene="guaA1" /locus_tag="AGROH133_03300" /note="GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]; Region: GuaA; COG0518" /db_xref="CDD:30864" misc_feature 229494..230027 /gene="guaA1" /locus_tag="AGROH133_03300" /note="Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; Region: GATase1_1; cd01741" /db_xref="CDD:153212" misc_feature order(229752..229754,230016..230018,230022..230024) /gene="guaA1" /locus_tag="AGROH133_03300" /note="catalytic triad [active]" /db_xref="CDD:153212" gene 230276..230464 /locus_tag="AGROH133_03301" /db_xref="GeneID:10265978" CDS 230276..230464 /locus_tag="AGROH133_03301" /note="Protein of unknown function DUF1508" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277531.1" /db_xref="GI:325291667" /db_xref="GeneID:10265978" /translation="MYKFEIYQDRAGEYRFRFKASNGETMFSSEGYKAKASAIHAIES IKKNSPGADTVDLSTMTA" misc_feature 230276..230449 /locus_tag="AGROH133_03301" /note="Domain of unknown function (DUF1508); Region: DUF1508; cl01356" /db_xref="CDD:194110" gene 230642..231739 /locus_tag="AGROH133_03302" /db_xref="GeneID:10265979" CDS 230642..231739 /locus_tag="AGROH133_03302" /EC_number="3.2.1.-" /note="glycoside hydrolase, catalytic core, glycosyl hydrolases family 25; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)" /codon_start=1 /transl_table=11 /product="lysozyme" /protein_id="YP_004277532.1" /db_xref="GI:325291668" /db_xref="GeneID:10265979" /translation="MRSSAVPALLFGCLLLGGCTSSSGPESLMAGLPSKETTSSVTPS APVPQASVGSQPITAQPRQEVLAWGGPVPEEPKAFSAVTPRAPVPQNALETRLPSPSQ AGMVRPAERPMERPVQLAMAAAPAASAGAQIRSRIFRSSFSDAKPINFGRVQPRHFQV HGVDVSRWQANIDWPQLRTRGANFAFIKATDGGDHLDPMFRTNWQRAKEAGIRRGAYH FFYWCRSAGEQADWFIRNVPRDPDALPPVIDVEYNGESSCKMRHSRERILEKMRVFMD KLERHYGQRPIIYTAPDFYKDNLTGEFQDYPFWLRAVAQHPSVVYPGRKWLFWQYSGS GLSHGVDGRIDLNVFNGSEDAWHRWVDRRSS" misc_feature <230714..>230998 /locus_tag="AGROH133_03302" /note="DNA polymerase III subunits gamma and tau; Validated; Region: PRK07994" /db_xref="CDD:181191" misc_feature 231119..231694 /locus_tag="AGROH133_03302" /note="Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the...; Region: GH25_muramidase_1; cd06413" /db_xref="CDD:119375" misc_feature 231128..231661 /locus_tag="AGROH133_03302" /note="Glycosyl hydrolases family 25; Region: Glyco_hydro_25; pfam01183" /db_xref="CDD:144684" misc_feature order(231131..231133,231203..231205,231290..231292, 231296..231298,231386..231388,231392..231394, 231506..231508,231566..231568,231629..231631, 231674..231676) /locus_tag="AGROH133_03302" /note="active site" /db_xref="CDD:119375" gene complement(231751..232626) /locus_tag="AGROH133_03304" /db_xref="GeneID:10265980" CDS complement(231751..232626) /locus_tag="AGROH133_03304" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277533.1" /db_xref="GI:325291669" /db_xref="GeneID:10265980" /translation="MDKTTSGWLSGLIGVVIFSGSLPATRVAVTGFDPVFLTLARASI AGLLALALLFVFRQKRPARDDMASLFIVSFGVVVGFPLLTALALRHITSAHSIVFVGL LPLATAVFAVLRGGERPRPAFWFFSCLGSVLVAGFSLSNSLASGLGASLAGDLLMLGA IIVCGLGYAEGAALSRKLGGWQVISWALVLSLPLMLPLAFFTGPQTLAGIDPQAWGGL AYVSLFSMLIGFIFWYRGLALGGIAAVGQLQLLQPFFGLVLAATLLHEEVSPAMIGIT LVVVLCVAGARKFSR" gene 232794..234140 /locus_tag="AGROH133_03315" /db_xref="GeneID:10265981" CDS 232794..234140 /locus_tag="AGROH133_03315" /note="Pyridoxal phosphate-dependent transferase, major region; Transcriptional regulators containing a DNA- binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004277534.1" /db_xref="GI:325291670" /db_xref="GeneID:10265981" /translation="MRQRIASRSLVPGARLPSVRALAKAMQVSTSTVVEAYDRLVADG TISSRPGSGFYVAGPLAPLSLADIEPRLDRAVDPLWVSRQALDEGAALAKPGCGWLPA SWMPEQALRRAMRGLARADASLLTDYANPMGLLPLRQLLSRRLTEHSVQAGASQIVLT DSGTQAIDLLCRFLLQPGDTVIVDDPCYFNFRALLRAHRVKIVGVPYTPAGPDLPLFE QAVKEHQPRLYITNSAIHNPTGARLSAVSAHRLLMLAEQAGLTIIEDDIFADFETQAA PRLAAFDGLNRVVQIGSFSKTLSASVRCGFIAAPPAWVEALTDLKIATAFGGANFSAA LILSLLTDGSYRKHVEALRQRLAAAVPEAAARLKALGCVPWIEPQAGMFLWCRLPEGV DAADVARRALVQQVVLAPGNVFSSAQNASAFMRFNVSQMAAPQVMAVLADSLRQSA" misc_feature 232794..234131 /locus_tag="AGROH133_03315" /note="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:31361" misc_feature 232794..232964 /locus_tag="AGROH133_03315" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(232842..232844,232848..232853,232875..232889, 232893..232898,232905..232907,232935..232940, 232944..232955) /locus_tag="AGROH133_03315" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 233232..234131 /locus_tag="AGROH133_03315" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(233277..233285,233355..233357,233502..233504, 233595..233597,233670..233672,233676..233681, 233700..233702) /locus_tag="AGROH133_03315" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(233286..233288,233385..233387,233574..233576, 233694..233702,233787..233789,233796..233798) /locus_tag="AGROH133_03315" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 233679..233681 /locus_tag="AGROH133_03315" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 234229..234546 /locus_tag="AGROH133_03316" /db_xref="GeneID:10265982" CDS 234229..234546 /locus_tag="AGROH133_03316" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277535.1" /db_xref="GI:325291671" /db_xref="GeneID:10265982" /translation="MTFDPNNPRPDRDLRPELNISNEPLARKSPSWMPWLAILVVALV GVFAWSQMSGPNTDPATTSSTMPPAATQQAPAPVTPTVPATPPANNAAPASPNTGGTQ TQP" gene complement(234617..235075) /locus_tag="AGROH133_03318" /db_xref="GeneID:10265983" CDS complement(234617..235075) /locus_tag="AGROH133_03318" /note="Transcriptional regulator, Rrf2; Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, BadM/Rrf2 family" /protein_id="YP_004277536.1" /db_xref="GI:325291672" /db_xref="GeneID:10265983" /translation="MRHDTRLSRVLHILIHMEKHEGAATSESIAAMLQTNPVVVRRTM AGLREHGYVSSEKGHGGGWVLARPLSEITLLDIYRALGAPELFSIGLAGDNPNCVIEQ AVNAALFDAMNEAETILLSRFGNITLSVLAEESMSRWSRLSNHPSAMDQL" misc_feature complement(234662..235075) /locus_tag="AGROH133_03318" /note="Predicted transcriptional regulator [Transcription]; Region: COG1959" /db_xref="CDD:32142" misc_feature complement(234833..235072) /locus_tag="AGROH133_03318" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 235226..236113 /gene="trxB" /locus_tag="AGROH133_03319" /db_xref="GeneID:10265984" CDS 235226..236113 /gene="trxB" /locus_tag="AGROH133_03319" /EC_number="1.8.1.9" /note="FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Thioredoxin reductase" /codon_start=1 /transl_table=11 /product="thioredoxin reductase protein" /protein_id="YP_004277537.1" /db_xref="GI:325291673" /db_xref="GeneID:10265984" /translation="MKYDVIIIGGSYAGLSAALQLGRARKNILVVDAGERRNRFASHS HGFLGQDGKAPGDIIAEARRQIERYPTIHWAEGRVTNAEGSFDDFVIKIDGNRRERAA RLILATGVTDELPDIAGLKERWGSAVFHCPYCHGYELDQRRIGVIAASPLAIHHALML PDWGETTFFTNGIFVPDAEQNALLSARGVRVEKERIREIAGHADVVLADGRSIALAGL FTQPKLLIASDWIEKLGCIVEEGPMGSSIVTDAMKQTTVRGIFACGDVARPAGSVALS VGDGAMAGAAAHRSIMFPE" misc_feature 235226..236110 /gene="trxB" /locus_tag="AGROH133_03319" /note="Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; Region: TrxB; COG0492" /db_xref="CDD:30838" misc_feature 235232..>235435 /gene="trxB" /locus_tag="AGROH133_03319" /note="Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; Region: GlpB; cl10040" /db_xref="CDD:189211" gene complement(236114..237016) /locus_tag="AGROH133_03320" /db_xref="GeneID:10265985" CDS complement(236114..237016) /locus_tag="AGROH133_03320" /note="AraC protein, arabinose-binding/dimerisation; AraC-type DNA-binding domain-containing proteins" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004277538.1" /db_xref="GI:325291674" /db_xref="GeneID:10265985" /translation="MTAILVSNMRTQSGCGYEREATLAPQGTSDLERSCKFEGIVQAP SSEGIERIEARFHGNAYAPHRHDTYALGVTLSGVQTFSYRGTSHFSTPGKVIVLHPDE VHDGGAGTDEGLRYRMLYLPPEKTMEAATGFHALPFAKNPVIEDDEFRQCLIEALGNL EGEPDNLLLTDWQSRLSDLLWKHSNGSKRTIKRLDRIAVFRCRDYLLENSALAVSSEK LEQISGLDRFTLFRHFRSLFGTSPHRYLIMRRLQKCKDMMRAGAGLAETAFACGFADQ AHFTRHFKNAFGMPPGRWLSLVSH" misc_feature complement(236477..236875) /locus_tag="AGROH133_03320" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" misc_feature complement(236135..236482) /locus_tag="AGROH133_03320" /note="AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:32389" misc_feature complement(236132..>236227) /locus_tag="AGROH133_03320" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 236991..237398 /locus_tag="AGROH133_03321" /db_xref="GeneID:10265986" CDS 236991..237398 /locus_tag="AGROH133_03321" /note="Protein of unknown function (DUF2000); Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277539.1" /db_xref="GI:325291675" /db_xref="GeneID:10265986" /translation="MFDTKIAVILRDDLAVWQKLNVTAFLMSGIVAQTREIIGEPYRD GAGNVYNPLSVQPIVVMATDQEALRKIHQRSLEREVTTSLYIEEMFATGHDVANRQVF SEFSPDNAKVVGMALRADKKIVDKITKGAKLHA" misc_feature 236991..237395 /locus_tag="AGROH133_03321" /note="Protein of unknown function (DUF2000); Region: DUF2000; cl02074" /db_xref="CDD:121069" gene complement(237470..239296) /gene="lepA" /locus_tag="AGROH133_03322" /db_xref="GeneID:10265987" CDS complement(237470..239296) /gene="lepA" /locus_tag="AGROH133_03322" /note="binds to the ribosome on the universally-conserved alpha-sarcin loop; Membrane GTPase LepA" /codon_start=1 /transl_table=11 /product="GTP-binding protein lepA" /protein_id="YP_004277540.1" /db_xref="GI:325291676" /db_xref="GeneID:10265987" /translation="MSTNSTRTPLDHIRNFSIVAHIDHGKSTLADRLIQSTGGLAERD MSEQVLDSMDIERERGITIKAQTVRLHYKGNNGETYVLNLIDTPGHVDFAYEVSRSLS ACEGSLLVVDASQGVEAQTLANVYQAIDNNHELVTVLNKIDLPAAEPDRIKEQIEEVI GIDASEAVLISAKTGLGIPDVLEAIVNRLPPPKSEVGENGPLKALLVDSWYDTYLGVM VLVRVIDGVLTKGQQIRMMGSGAKYGVERVGVLTPKMVNVDSLGPGEIGFITASIKEV ADTRVGDTITDDKRPTAQALPGFKPAQPVVFCGLFPVDAADFEDLRAAVGKLRLNDAS FSFEMESSAALGFGFRCGFLGLLHLEIIQERLEREFNLDLVATAPSVVYEMTLTDGTE KELHNPADMPDVVKIKEIREPWIKATILTPDEYLGGILKLCQDRRGLQTELTYVGNRA MITYELPLNEVVFDFYDRLKSISKGYASFDYNIIDYREGDLVKMSILVNGDPVDALSM LVHRSAADRRGRGMCEKLKELIPPHMFQIPIQAAIGGKVIARETVRALRKDVTAKCYG GDATRKRKLLDKQKEGKKRMRQFGKVEIPQEAFIAALKMNDE" misc_feature complement(237473..239275) /gene="lepA" /locus_tag="AGROH133_03322" /note="GTP-binding protein LepA; Provisional; Region: PRK05433" /db_xref="CDD:180078" misc_feature complement(238721..239257) /gene="lepA" /locus_tag="AGROH133_03322" /note="LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and...; Region: LepA; cd01890" /db_xref="CDD:133290" misc_feature complement(239216..239239) /gene="lepA" /locus_tag="AGROH133_03322" /note="G1 box; other site" /db_xref="CDD:133290" misc_feature complement(order(238832..238834,238844..238846, 238952..238957,239024..239029,239096..239101, 239192..239197,239204..239206,239213..239218, 239228..239230,239234..239236)) /gene="lepA" /locus_tag="AGROH133_03322" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133290" misc_feature complement(order(238778..238786,238868..238870, 238874..238879,239213..239230)) /gene="lepA" /locus_tag="AGROH133_03322" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133290" misc_feature complement(239099..239134) /gene="lepA" /locus_tag="AGROH133_03322" /note="Switch I region; other site" /db_xref="CDD:133290" misc_feature complement(239111..239113) /gene="lepA" /locus_tag="AGROH133_03322" /note="G2 box; other site" /db_xref="CDD:133290" misc_feature complement(239030..239041) /gene="lepA" /locus_tag="AGROH133_03322" /note="G3 box; other site" /db_xref="CDD:133290" misc_feature complement(238979..239035) /gene="lepA" /locus_tag="AGROH133_03322" /note="Switch II region; other site" /db_xref="CDD:133290" misc_feature complement(238868..238879) /gene="lepA" /locus_tag="AGROH133_03322" /note="G4 box; other site" /db_xref="CDD:133290" misc_feature complement(238778..238786) /gene="lepA" /locus_tag="AGROH133_03322" /note="G5 box; other site" /db_xref="CDD:133290" misc_feature complement(238436..238693) /gene="lepA" /locus_tag="AGROH133_03322" /note="lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-...; Region: lepA_II; cd03699" /db_xref="CDD:58090" misc_feature complement(237827..238063) /gene="lepA" /locus_tag="AGROH133_03322" /note="lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709" /db_xref="CDD:58062" misc_feature complement(237482..237805) /gene="lepA" /locus_tag="AGROH133_03322" /note="GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421" /db_xref="CDD:191515" gene complement(239370..240239) /locus_tag="AGROH133_03323" /db_xref="GeneID:10265988" CDS complement(239370..240239) /locus_tag="AGROH133_03323" /note="Predicted amidohydrolase" /codon_start=1 /transl_table=11 /product="carbon-nitrogen hydrolase" /protein_id="YP_004277541.1" /db_xref="GI:325291677" /db_xref="GeneID:10265988" /translation="MTKLAASQYAIELIETWEGYAAHLSAIVREAKEKGAELLLLPEY SAMTLTGQLPPDARSDLHRSIEEIQPLIPSWVELCDELARQHQILFQPGSAPVKDKDG KFRNRAWLFGPNGLIGYQDKQIMTRFEREQWNIHAGIEGLKAFETPIGRLGILICYDN EFPMLGRKLAELGVELVLAPSCTDTLAGAYRVRIGAQARALENQYAVLSSPTAGEAPW SPAVDENRGRAALYVPSDYGMPASGIVAESESDAVTHSTLLIADIDLAAVAKLRTEGQ VATRRDWPEQFAI" misc_feature complement(239379..240233) /locus_tag="AGROH133_03323" /note="Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases); Region: nitrilase_Rim1_like; cd07574" /db_xref="CDD:143598" misc_feature complement(order(239694..239696,239757..239762, 239766..239771,239847..239849,239862..239864, 239874..239876,240111..240113)) /locus_tag="AGROH133_03323" /note="putative active site [active]" /db_xref="CDD:143598" misc_feature complement(order(239769..239771,239874..239876, 240111..240113)) /locus_tag="AGROH133_03323" /note="catalytic triad [active]" /db_xref="CDD:143598" misc_feature complement(order(239385..239399,239556..239561, 239634..239639,239643..239651,239655..239660, 239736..239741,239748..239762,239766..239768, 239820..239822,239826..239831,239850..239852, 239862..239873)) /locus_tag="AGROH133_03323" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143598" gene complement(240236..240844) /locus_tag="AGROH133_03324" /db_xref="GeneID:10265989" CDS complement(240236..240844) /locus_tag="AGROH133_03324" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277542.1" /db_xref="GI:325291678" /db_xref="GeneID:10265989" /translation="MTVEIKSLSGIEAAPYFDDLARLRIEVFRAFPYLYDGSLDYERK YLATYADTKGAVSVLALDGAHVVGMSTGMPMAAETDEVKAPFLKAGYDPDRIFYFGES VLLPSYRGHGIGVRFFAEREAHASKLGFNCCTFCAVERPADHPRRPLDYVPLNTFWEK RGYRHHPELHTSFTWRDLDESTESPKPLSFWMKTIAAGEENR" gene 240918..241319 /locus_tag="AGROH133_03325" /db_xref="GeneID:10265990" CDS 240918..241319 /locus_tag="AGROH133_03325" /note="Conserved hypothetical protein CHP02096; Ketosteroid isomerase-related protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277543.1" /db_xref="GI:325291679" /db_xref="GeneID:10265990" /translation="MTATETIRAYYDAFNRQDMDAFLALLHDEVVHDINQGERQTGKP AFASFMQHMNRCYKENLTDMVIMASEDGKRASAEFIVNGEYLATDEGLPEADGQTYVL PAGAFFDLKDGKVSRVTNYYNLNDWIAQVGA" misc_feature 240927..241313 /locus_tag="AGROH133_03325" /note="Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109" /db_xref="CDD:195792" gene 241402..241995 /locus_tag="AGROH133_03326" /db_xref="GeneID:10265991" CDS 241402..241995 /locus_tag="AGROH133_03326" /note="Cupin, RmlC-type; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_004277544.1" /db_xref="GI:325291680" /db_xref="GeneID:10265991" /translation="MYSRMMENEDHILERSIGDRIKTLRAQNGLTLDRLAAESGVSRA MISRIERGEASPTASLLARICAALGLSLSGFFAEDEEAVSPLVKKRDQQLWKDPETGY VRRAISPPRVGSDVDIVEVEFPAGARVGFPPHAASRGMTQYVWLFEGVLEMTSGGDVH RLEPGDCLFMPVGEGHVFHNPSEKPARYAVVLDQRQR" misc_feature 241447..241779 /locus_tag="AGROH133_03326" /note="Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396" /db_xref="CDD:31586" misc_feature 241453..241626 /locus_tag="AGROH133_03326" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(241465..241467,241477..241479,241552..241554) /locus_tag="AGROH133_03326" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(241474..241476,241549..241551) /locus_tag="AGROH133_03326" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(241495..241500,241531..241533,241540..241542, 241552..241557) /locus_tag="AGROH133_03326" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature 241756..241974 /locus_tag="AGROH133_03326" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 242018..242536 /locus_tag="AGROH133_03328" /db_xref="GeneID:10265992" CDS 242018..242536 /locus_tag="AGROH133_03328" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase; Acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase, GNAT family" /protein_id="YP_004277545.1" /db_xref="GI:325291681" /db_xref="GeneID:10265992" /translation="MATIRVLNRAETINALPELCDVIADCVNGGASVGFMLPFSPKDA EPFWQEVADAVEAGSTIHVVAEVNDKVVGTVQVGLASKPNQPHRGDLMKLLVHRSARG LGLARKLMEKVEQEAAKRGRTLLVLDTATGSDAEAIYPRLGWERVGVIPDYALFPDGR YCGTTLFYKRIG" misc_feature 242201..242401 /locus_tag="AGROH133_03328" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature order(242297..242305,242333..242338) /locus_tag="AGROH133_03328" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(242547..243623) /locus_tag="AGROH133_03329" /db_xref="GeneID:10265993" CDS complement(242547..243623) /locus_tag="AGROH133_03329" /codon_start=1 /transl_table=11 /product="Predicted dienelactone hydrolase" /protein_id="YP_004277546.1" /db_xref="GI:325291682" /db_xref="GeneID:10265993" /translation="MTLKNTLVALLMCAAFSPQAFAAEDVGLTSIPVPSKARNTNLDV TIWYPAKGGDGTPALSSENRIFQGTAVRKDATIKDGHFPLVLISHGSGSRAEGMAWIA AKLASEGFIVAGTNHPDTTSGDSTPADTPKIWERTNDLTTIVTALTTDGTWSGAIDGQ RIGVLGFSLGGSAAMEIAGARADLDAYVRYCEENAAMMDCQWFAGGRAYVNNEPVSVP KLDLRTIDKARFEQQNRDPRIRSAVLVDPGLALAFQPDSLRQIDIPLTFINLGSEGKI PPAVLADELAAQVPASTYRQVDEANHFSFLPLCKPDADAFLKSVGERDPICEPAGPRD RKDIHAQLETMIVNALNRTLKPGQ" misc_feature complement(242550..243494) /locus_tag="AGROH133_03329" /note="Predicted dienelactone hydrolase [General function prediction only]; Region: COG4188" /db_xref="CDD:33923" gene complement(243697..243816) /locus_tag="AGROH133_03331" /db_xref="GeneID:10265994" CDS complement(243697..243816) /locus_tag="AGROH133_03331" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277547.1" /db_xref="GI:325291683" /db_xref="GeneID:10265994" /translation="MTTSRSATTKGKGMKSTDNDPEAMNYHPFMDQIAFRHDL" gene 243767..244855 /locus_tag="AGROH133_03332" /db_xref="GeneID:10265995" CDS 243767..244855 /locus_tag="AGROH133_03332" /note="Helix-turn-helix, AraC type; AraC-type DNA-binding domain-containing proteins" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004277548.1" /db_xref="GI:325291684" /db_xref="GeneID:10265995" /translation="MLFIPLPFVVALLLVVMFIVFFRGGEDMRTNRAFLALIALCAVQ SVLVGLRWGYGVSEARYVLPVLAACLPPLVYIAFRGLMGVGVESRRAMFASLVLSPLF VVFLEFVLPVAIDFALIVIFVGHAIALLLLARKGPDGLDEAQFASVASAHKALIVAAV ALCVSAFFDLLVFFDFEWAHGENVAALVSNANLLGLLLIGLMAALAGKSKAPQTAAQP AAELSSPAPSQQDRDVVERLDRLMETHTLYRDENLNLSRLAKRLGLPSRQISGAINRS LGVNVSQYVNQLRIREACRLLEETDQSVTAIMLSSGFQTKSNFNREFRRVTGMSPVDW REREVWKLVSNTKTATRQMPDGRLKILK" misc_feature 244409..244777 /locus_tag="AGROH133_03332" /note="AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:32389" misc_feature <244532..244780 /locus_tag="AGROH133_03332" /note="NeuB family; Region: NeuB; cl00496" /db_xref="CDD:186036" gene complement(244859..245962) /locus_tag="AGROH133_03341" /db_xref="GeneID:10265996" CDS complement(244859..245962) /locus_tag="AGROH133_03341" /note="Bacterial extracellular solute-binding protein, family 7; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="periplasmic mannitol-binding protein" /protein_id="YP_004277549.1" /db_xref="GI:325291685" /db_xref="GeneID:10265996" /translation="MDRRSFIRKAGAVGAGVTATVLAAPAIAQENPKITWRMTSSFTK GLDILFGAGQIVADHVKEASGGNFVIQHFAGGEIVPALQAADAVTAGTVEMAHTCSYY YVGKDPTFALGTSVPFGLNARQTNAWFNQAGGNELLNEFLAQHNIYSILLGNTGAQMG GWFRKEINTIDDLKGLKMRIAGLTGQVMQKVGVTPQQIAGGDVYAALEKGTIDATEFV GPYDDQKLGFYKVAKYYYYPAWWEGGPAVHAFVNLQKFNELPENYKRILKDACAAGSA SMLERYDARNPKALKELVAQGAILRPFSQEILDVCHKAAQDTYAEISAKNESFKKIYD SQQAFKKDAYLWAQIAEYTYDTYMMIQQRNGTL" misc_feature complement(244883..245962) /locus_tag="AGROH133_03341" /note="Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl00710" /db_xref="CDD:153950" gene complement(246101..246574) /locus_tag="AGROH133_03343" /db_xref="GeneID:10265997" CDS complement(246101..246574) /locus_tag="AGROH133_03343" /note="Globin-like; Truncated hemoglobins" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277550.1" /db_xref="GI:325291686" /db_xref="GeneID:10265997" /translation="MQDQIAAKAAHNAEIQNRAEKAMAAIGIDAGFVDLLVETFYGRV LEHPTLGPVFDARLSGRWPEHMARMKQFWAAVAFKNGGYGGKPVQAHLGVKGMSAELF PQWLALFSATLDDIAPSPQAHSWFMETAERIAKSLTLSLFYNPAMDDPALRRMHP" misc_feature complement(246155..246511) /locus_tag="AGROH133_03343" /note="Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is...; Region: Trunc_globin; cd00454" /db_xref="CDD:29978" misc_feature complement(order(246185..246187,246194..246196, 246227..246229,246236..246238,246248..246250, 246257..246259,246344..246346,246353..246358, 246455..246457,246464..246469,246476..246478, 246482..246484,246497..246499)) /locus_tag="AGROH133_03343" /note="apolar tunnel; other site" /db_xref="CDD:29978" misc_feature complement(order(246164..246166,246176..246178, 246260..246262,246269..246271,246293..246295, 246302..246307,246311..246313,246317..246319, 246326..246328,246356..246361,246368..246370, 246380..246382,246413..246418,246452..246454)) /locus_tag="AGROH133_03343" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:29978" misc_feature complement(order(246224..246232,246242..246244, 246251..246253,246434..246439,246446..246448)) /locus_tag="AGROH133_03343" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29978" gene 246715..247698 /locus_tag="AGROH133_03344" /db_xref="GeneID:10265998" CDS 246715..247698 /locus_tag="AGROH133_03344" /note="Ferritin/ribonucleotide reductase-like, Rubrerythrin; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277551.1" /db_xref="GI:325291687" /db_xref="GeneID:10265998" /translation="MFRSLFSLSKRPFSSLGEQEILALAISSEEDDSRIYRSYADHLR AQYPQSAKIFDDMAEVEQQHRNVLIDMHRRRFGETIPLIRREHVRGFYERTPDWLVKN LSLDKIRAQAELMEAQAIRFYDEAVKRTSDASTRKLLGDLAEAERGHEDIAQMLEEKH LDENGKTEEEETAKRQFLLTFVQPGLAGLMDGSVSTLAPIFAAAFATQDTWQTFLIGL SASVGAGISMGFTEAAHDDGKLSGRGSPVKRGLASGIMTAVGGLGHALPYLIPHFWTA TAIAAVVVFVELWAIAFIQNRFMETPFLRAVFQVVLGGSLVLAAGIIIGNA" misc_feature 246772..247176 /locus_tag="AGROH133_03344" /note="Uncharacterized family of ferritin-like proteins found in archaea and bacteria; Region: Ferritin_like_AB; cd01045" /db_xref="CDD:153104" misc_feature order(246799..246801,246895..246897,246904..246906, 247060..247062,247150..247152,247159..247161) /locus_tag="AGROH133_03344" /note="diiron binding motif [ion binding]; other site" /db_xref="CDD:153104" misc_feature 246955..247485 /locus_tag="AGROH133_03344" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1633" /db_xref="CDD:31820" misc_feature 247252..247686 /locus_tag="AGROH133_03344" /note="CCC1-related protein family; Region: CCC1_like_1; cd02437" /db_xref="CDD:153128" gene complement(247762..248376) /locus_tag="AGROH133_03349" /db_xref="GeneID:10265999" CDS complement(247762..248376) /locus_tag="AGROH133_03349" /note="Predicted transglutaminase-like cysteine peptidase, BTLCP, Bacterial protein of unknown function (DUF920); Predicted periplasmic protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277552.1" /db_xref="GI:325291688" /db_xref="GeneID:10265999" /translation="MMNAPLARALLFAVAAGLLTAASAVAETKGSPSMVTGGITSQPI GHYEFCQKYASECNIRSKLTPPPRVTEYGWGVVREINTSVNTSIVAMTDMEIYGKEEV WEYPTTAGDCEDFVLLKRKKLIERGFSVADLLITVVRKPDGEGHAVLTLRTTDGDYIL DNLTDDVKLWTDTNYTYLKRQASFNSGRWVSIEDGRDVLVGALR" misc_feature complement(247771..248277) /locus_tag="AGROH133_03349" /note="Bacterial protein of unknown function (DUF920); Region: DUF920; cl01479" /db_xref="CDD:154425" gene complement(248495..249283) /locus_tag="AGROH133_03351" /db_xref="GeneID:10266000" CDS complement(248495..249283) /locus_tag="AGROH133_03351" /note="Alpha/beta hydrolase fold-1; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277553.1" /db_xref="GI:325291689" /db_xref="GeneID:10266000" /translation="MTEQAAEFLRVGMADDARDIAVLHRPSTSREDAPTLVWLGGYRS DMTGTKAVELDRFAAENGIACLRLDYSGHGASGGDFQKGTISRWLEEALAVVREKAPS RVVLIGSSMGGWIALRMVEELRKAGGTPSVAGLVLIAPAPDFTADLIEPSLTDAEKRS LEDKGYFEEHSEYSPEPNIFTRALMEDAQQNRVLTGIITTGCPVHILQGMRDPDVPYQ HALKLLEHLPADDVVLTLIRDGDHRLSRPQDIDRMLAAVKALAT" misc_feature complement(248498..249181) /locus_tag="AGROH133_03351" /note="Uncharacterised protein family (UPF0227); Region: UPF0227; cl14886" /db_xref="CDD:196847" misc_feature complement(248534..249178) /locus_tag="AGROH133_03351" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" gene 249585..250007 /gene="infC" /locus_tag="AGROH133_03352" /db_xref="GeneID:10266001" CDS 249585..250007 /gene="infC" /locus_tag="AGROH133_03352" /note="IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; Translation initiation factor 3 (IF-3)" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-3" /protein_id="YP_004277554.1" /db_xref="GI:325291690" /db_xref="GeneID:10266001" /translation="MPTDQALKMAEDAGLDLVEISPNAEPPVCKILDLGKLKYSTQKK AAEARKKQKIVEVKEIKMRPNIDTHDYDVKMKAMNRFFDEGDKVKVTLKFRGREMAHQ ELGMKLLLQVKEDTQAIAKVEAEPKLEGRQMMMVLAPK" misc_feature <249585..249701 /gene="infC" /locus_tag="AGROH133_03352" /note="Translation initiation factor IF-3, N-terminal domain; Region: IF3_N; pfam05198" /db_xref="CDD:191228" misc_feature 249768..250004 /gene="infC" /locus_tag="AGROH133_03352" /note="Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707" /db_xref="CDD:189681" gene 250202..250405 /gene="rpmI" /locus_tag="AGROH133_03353" /db_xref="GeneID:10266002" CDS 250202..250405 /gene="rpmI" /locus_tag="AGROH133_03353" /note="Ribosomal protein L35" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L35" /protein_id="YP_004277555.1" /db_xref="GI:325291691" /db_xref="GeneID:10266002" /translation="MPKMKTKSAAKKRFKITATGKVVAAAAGKRHGMIKRTNKFIRDA RGTMVLAEADGKKVVKNYLPNGL" misc_feature 250202..250399 /gene="rpmI" /locus_tag="AGROH133_03353" /note="Ribosomal protein L35; Region: Ribosomal_L35p; cl00392" /db_xref="CDD:185963" gene 250446..250850 /gene="rplT" /locus_tag="AGROH133_03354" /db_xref="GeneID:10266003" CDS 250446..250850 /gene="rplT" /locus_tag="AGROH133_03354" /note="binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; Ribosomal protein L20" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L20" /protein_id="YP_004277556.1" /db_xref="GI:325291692" /db_xref="GeneID:10266003" /translation="MARVKRGVTSRAKHTKTLKAAKGFYGRRKNTIRAAKAAVDRSKQ YAYRDRKVNKRNFRALWIQRINAAVREFGLTYGRFIDGLNKAGIEVDRKVLSDMAIHE PAAFGVLVETAKKALEYLKEAGTTNEFETAVK" misc_feature 250461..250778 /gene="rplT" /locus_tag="AGROH133_03354" /note="Ribosomal protein L20; Region: Ribosomal_L20; cd07026" /db_xref="CDD:197305" misc_feature order(250461..250478,250482..250493,250506..250529, 250533..250544,250551..250556,250566..250571, 250578..250622,250626..250634,250641..250643, 250653..250655,250671..250676,250683..250688, 250695..250697,250719..250727) /gene="rplT" /locus_tag="AGROH133_03354" /note="23S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:197305" misc_feature order(250551..250553,250563..250565,250572..250577, 250581..250586,250593..250595,250710..250721, 250728..250730,250746..250751,250767..250772) /gene="rplT" /locus_tag="AGROH133_03354" /note="L21 binding site [polypeptide binding]; other site" /db_xref="CDD:197305" misc_feature order(250614..250616,250623..250628,250635..250637, 250644..250649,250653..250655,250725..250727, 250734..250736,250743..250745) /gene="rplT" /locus_tag="AGROH133_03354" /note="L13 binding site [polypeptide binding]; other site" /db_xref="CDD:197305" gene 251016..251894 /locus_tag="AGROH133_03355" /db_xref="GeneID:10266004" CDS 251016..251894 /locus_tag="AGROH133_03355" /note="Protein kinase-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277557.1" /db_xref="GI:325291693" /db_xref="GeneID:10266004" /translation="MLVNKIQVVEAEGFRVHLDDDDIATLMRVLLKSDRRIQKVELSQ LTVWIKRQGTERVTWWMKMQKLLSKLLPYAFLRPSEPLDGAGLMQRELETLQQFQQGG FPVAPLIYSSRTAMVLGDVGPTLMERMDALKASDPVQHDALLVKSAEALGELHAARLC HGRPHVRDFFLKDDRIGFMDFEERPQEVMPLETAQARDIWLLFLQVATRACDAPKTCD AAFARWRENAPPRALEELCRLIGILGRFLPLARLIGRVRMGSDLRRFIMATDYLMNAV NPEAAVKNTGKAGKDD" misc_feature 251238..251561 /locus_tag="AGROH133_03355" /note="Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cd05120" /db_xref="CDD:88612" misc_feature order(251238..251240,251244..251246,251331..251333, 251391..251402,251502..251504,251514..251519, 251523..251525,251550..251555) /locus_tag="AGROH133_03355" /note="active site" /db_xref="CDD:88612" misc_feature order(251238..251240,251244..251246,251331..251333, 251391..251402,251502..251504,251514..251519, 251523..251525,251550..251555) /locus_tag="AGROH133_03355" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88612" gene 251887..252969 /gene="pheS" /locus_tag="AGROH133_03356" /db_xref="GeneID:10266005" CDS 251887..252969 /gene="pheS" /locus_tag="AGROH133_03356" /EC_number="6.1.1.20" /note="catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; Phenylalanyl-tRNA synthetase subunit alpha" /codon_start=1 /transl_table=11 /product="phenylalanyl-tRNA synthetase alpha chain" /protein_id="YP_004277558.1" /db_xref="GI:325291694" /db_xref="GeneID:10266005" /translation="MTELDTLKSQLMSEIAAAADEPAIEAVRVSALGKKGSVSELLKT LGSMTPEERQTRGAAINQLKTEITDLIGERKSGLKDAAIAARLKAETLDVSLPVRQSP TERGRIHPISQIVDEITAIFADMGFSIAEGPDIETDYYNFTALNFPEGHPAREMHDTF FFQPDENGERKVLRTHTSPVQIRTMESQKPPIRIVIPGKTYRQDSDATHSPMFHQVEG LVIDKKAHVGNLRWVLEEFCKTFFEVDSVVMRFRPSFFPFTEPSFEVDIQCDRSGPIV KFGEGNDWMEILGCGMVHPNVLRAGGLDPDEYQGFAWGMGLDRIAMLKYGMPDLRDFF NADVRWMNHYGFRPLDMPTLFGGLSV" misc_feature 251887..252918 /gene="pheS" /locus_tag="AGROH133_03356" /note="phenylalanyl-tRNA synthetase subunit alpha; Validated; Region: pheS; PRK00488" /db_xref="CDD:179046" misc_feature 251965..252150 /gene="pheS" /locus_tag="AGROH133_03356" /note="Aminoacyl tRNA synthetase class II, N-terminal domain; Region: Phe_tRNA-synt_N; pfam02912" /db_xref="CDD:111764" misc_feature 252211..252903 /gene="pheS" /locus_tag="AGROH133_03356" /note="Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496" /db_xref="CDD:29807" misc_feature order(252211..252213,252220..252222,252229..252234, 252253..252255,252268..252273,252277..252285, 252334..252336,252349..252351,252361..252372, 252382..252387,252436..252438,252457..252465, 252475..252477,252481..252483,252487..252489, 252493..252495,252514..252516,252565..252573, 252577..252582,252643..252645,252664..252672, 252676..252678,252766..252771,252886..252888, 252892..252900) /gene="pheS" /locus_tag="AGROH133_03356" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29807" misc_feature 252265..252285 /gene="pheS" /locus_tag="AGROH133_03356" /note="motif 1; other site" /db_xref="CDD:29807" misc_feature order(252349..252357,252412..252414,252418..252420, 252427..252429,252490..252492,252496..252498, 252508..252516,252523..252525,252529..252531, 252535..252537,252652..252654,252658..252663, 252742..252759,252823..252834,252841..252843, 252874..252876) /gene="pheS" /locus_tag="AGROH133_03356" /note="active site" /db_xref="CDD:29807" misc_feature 252487..252498 /gene="pheS" /locus_tag="AGROH133_03356" /note="motif 2; other site" /db_xref="CDD:29807" misc_feature 252826..252843 /gene="pheS" /locus_tag="AGROH133_03356" /note="motif 3; other site" /db_xref="CDD:29807" gene 252994..255417 /gene="pheT" /locus_tag="AGROH133_03357" /db_xref="GeneID:10266006" CDS 252994..255417 /gene="pheT" /locus_tag="AGROH133_03357" /EC_number="6.1.1.20" /note="catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; Phenylalanyl-tRNA synthetase beta subunit" /codon_start=1 /transl_table=11 /product="phenylalanyl-tRNA synthetase beta chain" /protein_id="YP_004277559.1" /db_xref="GI:325291695" /db_xref="GeneID:10266006" /translation="MKFTLSWLKEHLETDATLDEICERLTAIGLEVEDVDDKAAYKPF VIAKVVSAEKHPEADRLKVLMVDAGDGKPVQIVCGAPNARAGLVGALARPGVYVPGID VTLAVGKIRGVESHGMMCSEKELNISDDHDGIIDLPEDAPVGTSFATYAGLDDPVIEI NLTPNRPDCTSIYGIARDLAASGLGKLKTKPAPSFKVEGSTPVDVKLELDDAALCPGF SLRIVRGVKNGPSPKWMQQRLMAIGLRPINALVDITNYMTFDQGRPMHVFDAAKVKGD LTVRRAKEGETILALDQREYKLGPNNVVIADEKGLESIGGVMGGEHSGCDENTVDVLI ESALWDPINIAKTGRSLGIITDARYRFERGVDPEYMVPGLERTTELVLELCGGVAGEA KVVGYKGHQPKVVDFPLSEVKRLTGLEVSAEESLAILKGLGFGIEGTGERVSVTVPSW RPDVDGKADLVEEVMRIHGVDNIKPEPLESFGAVNGRILTTLQVRTRTARRALASRGM LEAVTWSFIPEAHAKLFGGGSPALKLANPIAADMSDMRPSLLPGLLTAAQRNADKGHG DVAIFEVSGTYEGDTPDTQRRVAGGVRRGTASLAGSGRMWSNATKGGGKPVDVYDAKA DALSVLEACGLPMANVQIEAGAPGWYHPGRSGTIKMGPKVVLGYFGEFHPKTLSELDV SGVYSGFEIYLDAMPEPKKKATRTKPALELSPFQAVKRDFAFVVDKSVEAGAIIKAAT SADRKLITGVNVFDVFEGASLGESRKSIAIEVQIQPVDRTLTDEDFEALTAKIVGNVE KSTGGVLRA" misc_feature 252994..255414 /gene="pheT" /locus_tag="AGROH133_03357" /note="phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629" /db_xref="CDD:179078" misc_feature 253123..253434 /gene="pheT" /locus_tag="AGROH133_03357" /note="tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796" /db_xref="CDD:48399" misc_feature order(253171..253173,253210..253212,253273..253275, 253315..253317,253336..253338,253345..253347) /gene="pheT" /locus_tag="AGROH133_03357" /note="putative tRNA-binding site [nucleotide binding]; other site" /db_xref="CDD:48399" misc_feature 253633..254151 /gene="pheT" /locus_tag="AGROH133_03357" /note="B3/4 domain; Region: B3_4; cl11458" /db_xref="CDD:196242" misc_feature 254197..254400 /gene="pheT" /locus_tag="AGROH133_03357" /note="tRNA synthetase B5 domain; Region: B5; cl08394" /db_xref="CDD:195731" misc_feature 254506..255081 /gene="pheT" /locus_tag="AGROH133_03357" /note="Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an...; Region: PheRS_beta_core; cd00769" /db_xref="CDD:29814" misc_feature order(254515..254517,254521..254523,254527..254535, 254587..254598,254629..254631,254671..254673, 254701..254703,254716..254718,254722..254724, 254728..254730,254770..254772,254866..254868) /gene="pheT" /locus_tag="AGROH133_03357" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29814" misc_feature 254515..254535 /gene="pheT" /locus_tag="AGROH133_03357" /note="motif 1; other site" /db_xref="CDD:29814" misc_feature 254647..254658 /gene="pheT" /locus_tag="AGROH133_03357" /note="motif 3; other site" /db_xref="CDD:29814" misc_feature 254722..254730 /gene="pheT" /locus_tag="AGROH133_03357" /note="motif 2; other site" /db_xref="CDD:29814" misc_feature 255130..255411 /gene="pheT" /locus_tag="AGROH133_03357" /note="Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; pfam03147" /db_xref="CDD:190543" gene complement(255473..256474) /locus_tag="AGROH133_03358" /db_xref="GeneID:10266007" CDS complement(255473..256474) /locus_tag="AGROH133_03358" /note="Aldo/keto reductase family; Predicted oxidoreductases (related to aryl- alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="aldo-keto reductase" /protein_id="YP_004277560.1" /db_xref="GI:325291696" /db_xref="GeneID:10266007" /translation="MKKRTLGNNLSVSALGLGCMGMTHAYSPTGDENSAIATLHRAVE LGVTFFDTAEVYGPYNNEILVGKGLKPYRDKVVIATKFGFKIDASKPAGQMMVGTDSR PENVRAVAEASLKRLGVDTIDLFYQHRVDPDVPIEDTVGAMAELVRQGKVKHLGLSEA SAETLRKAHSTHPIAAIQSEYSLWTRDVEENGVLETCRELGIGFVPFSPLGRGALTGA LKSLDGLASDDFRRGLPRFQSENFDANLALIKLLEDMAAEKGVTAGQLALAWVLAQGD FIVPIPGTTKIANLETNVAAADVSLTAEEVASLGALLSPAKVAGQRYPERMSQMANR" misc_feature complement(255515..256474) /locus_tag="AGROH133_03358" /note="Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]; Region: Tas; COG0667" /db_xref="CDD:31011" misc_feature complement(255539..256468) /locus_tag="AGROH133_03358" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature complement(order(255596..255601,255608..255610, 255623..255634,255683..255685,255839..255856, 255941..255943,255998..256003,256088..256093, 256232..256234,256307..256309,256322..256324, 256415..256423)) /locus_tag="AGROH133_03358" /note="active site" /db_xref="CDD:119408" misc_feature complement(order(256091..256093,256232..256234, 256307..256309,256322..256324)) /locus_tag="AGROH133_03358" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene 256565..257482 /locus_tag="AGROH133_03360" /db_xref="GeneID:10266008" CDS 256565..257482 /locus_tag="AGROH133_03360" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004277561.1" /db_xref="GI:325291697" /db_xref="GeneID:10266008" /translation="MRVVLLFRTMNRVQLSQLAVLAAVAEGRSFRKAAAELAIAPSAV SHAVSSLEASLGLRLLHRTTRSVSPTEEGRRLLETLGPALAEIDAVIDTLAEHGGRPA GPLRITLPRLAAEDLIMPRLGEFLRLYPDISLEISTDDRFEDIVAKGFDAGLRLGENL EADMIAVKASGPWRGAIVGAPTYFEENLPPREPRDLMRHRCILRRFSSGLLYRWELEK DGRPLVVDVQGPLILSDQSLIRRAAIDGAGLAFVFEQRVDDDIKEGRLVRVLEDWCAP FDGFYIYYPSRRQMRPALRAFVDFFRFRG" misc_feature 256640..257470 /locus_tag="AGROH133_03360" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 256640..256786 /locus_tag="AGROH133_03360" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 256865..257467 /locus_tag="AGROH133_03360" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474" /db_xref="CDD:176163" misc_feature order(256901..256903,256913..256915,257030..257032, 257072..257074,257081..257083,257270..257272, 257321..257323,257402..257404) /locus_tag="AGROH133_03360" /note="putative effector binding pocket; other site" /db_xref="CDD:176163" misc_feature order(256904..256909,256919..256924,256928..256933, 256940..256942,256952..256954,256958..256978, 257162..257164,257252..257266,257285..257290, 257297..257299) /locus_tag="AGROH133_03360" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176163" gene complement(257483..257926) /locus_tag="AGROH133_03362" /db_xref="GeneID:10266009" CDS complement(257483..257926) /locus_tag="AGROH133_03362" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family; Acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004277562.1" /db_xref="GI:325291698" /db_xref="GeneID:10266009" /translation="MDLVIRDAEPEDRAEWLRLWNDYLAFYNVHLAEEVTDHTWARIL DPASRVSMRVALLGDRMAGFAIHHFHDSTWVKTPDCYLEDLFVDGAIRGKGTGRALMD DLIAICKEKGWSRLYWNTDEHNHRAQKLYDSYVKSDGHIRYRIKF" misc_feature complement(257525..257926) /locus_tag="AGROH133_03362" /note="Acetyltransferases [General function prediction only]; Region: RimI; COG0456" /db_xref="CDD:30804" misc_feature complement(257576..257767) /locus_tag="AGROH133_03362" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(257633..257638,257666..257674)) /locus_tag="AGROH133_03362" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(257928..258878) /locus_tag="AGROH133_03363" /db_xref="GeneID:10266010" CDS complement(257928..258878) /locus_tag="AGROH133_03363" /note="oxidoreductase protein, aldo/keto reductase family; Predicted oxidoreductases (related to aryl- alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="oxidoreductase protein, aldo/keto reductase family" /protein_id="YP_004277563.1" /db_xref="GI:325291699" /db_xref="GeneID:10266010" /translation="MEKRSLGRTGLSIAPIVFGGNVFGWTADEKTSFALLDSFFDAGF NAIDTADVYSAWVDGHEGGESEAIIGKWLKQSSVKREDAVIVTKVGFDNRGQKTGLSA KWIAEAVDASLKRLQTDYIDLYLAHKPDADVPLEETLAAFAKLKEQGKIRAIGCSNYS ASQLQEALDTAAKNDLPRYDVLQPEYNLYNRADFEGPLADLCVAQEIGVINYYSLAAG FLTGKYRAKADTEGVARSYRVGEYVNARGLAVLGAMDAVAVETGAKLADIALAWLLRK KAVTAPIASATSLSQLESFKRAVNLKLTDEMMTLLDKAGA" misc_feature complement(257931..258878) /locus_tag="AGROH133_03363" /note="Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]; Region: Tas; COG0667" /db_xref="CDD:31011" misc_feature complement(257937..258872) /locus_tag="AGROH133_03363" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature complement(order(257994..257999,258006..258008, 258021..258032,258081..258083,258228..258245, 258330..258332,258405..258410,258495..258500, 258615..258617,258720..258722,258735..258737, 258816..258824)) /locus_tag="AGROH133_03363" /note="active site" /db_xref="CDD:119408" misc_feature complement(order(258498..258500,258615..258617, 258720..258722,258735..258737)) /locus_tag="AGROH133_03363" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene complement(258990..259973) /locus_tag="AGROH133_03364" /db_xref="GeneID:10266011" CDS complement(258990..259973) /locus_tag="AGROH133_03364" /note="ThiJ/PfpI; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004277564.1" /db_xref="GI:325291700" /db_xref="GeneID:10266011" /translation="MDNGGTRTIPFYTLVPPHALLLDIAGPLEVIRYANAEQRDVHFD CRYIAEHDQQQSSIGLGLCGLEALPESLPDNAFLLISGSISRFDNAPEMRRERQALVA WLRRAVRADTTVISICSGALLAGEAGLFDGRSCTTHADCIEALRRTAPLSQVAENRLF VEDGNRFSSAGISTGTDLMLHVVSRLTSPAVAARIAKNMVVYLRRSGSDPQISPWLTG RNHIHPAIHRVQDRVMTEPAQDWSLERLADIAALSERHLSRLFREHTGISVIDYVNLM RVNLARDILANSRLDMEAIAERAGFASARHLRRVWQQHNHLPPSHYRGFQA" misc_feature complement(259005..259958) /locus_tag="AGROH133_03364" /note="Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977" /db_xref="CDD:34583" misc_feature complement(259368..259934) /locus_tag="AGROH133_03364" /note="AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_1; cd03137" /db_xref="CDD:153231" misc_feature complement(259620..259622) /locus_tag="AGROH133_03364" /note="conserved cys residue [active]" /db_xref="CDD:153231" misc_feature complement(259152..259265) /locus_tag="AGROH133_03364" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene complement(259973..260557) /locus_tag="AGROH133_03366" /db_xref="GeneID:10266012" CDS complement(259973..260557) /locus_tag="AGROH133_03366" /EC_number="3.3.2.1" /note="Amidases related to nicotinamidase" /codon_start=1 /transl_table=11 /product="isochorismatase hydrolase" /protein_id="YP_004277565.1" /db_xref="GI:325291701" /db_xref="GeneID:10266012" /translation="MNPMENHEMSSSHTALLVIDVQESFRHTPYFEESELPAYLEKQQ ALIDGAKASGIPVVQIFHVDGDRAFAEESGYIRALEGVRITPDVTFRKNRHSAFAGTG LDIWLTQKGINRLIVSGIRTEQCCETTTRHASDLGYTVDYVTEATLTFPMTHASGTVF SPDDIRTRTELVLAGRFARIATVGDVLETVRKAA" misc_feature complement(260060..260515) /locus_tag="AGROH133_03366" /note="Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cl00220" /db_xref="CDD:185838" misc_feature complement(order(260183..260185,260282..260284, 260498..260500)) /locus_tag="AGROH133_03366" /note="catalytic triad [active]" /db_xref="CDD:29548" misc_feature complement(260195..260200) /locus_tag="AGROH133_03366" /note="conserved cis-peptide bond; other site" /db_xref="CDD:29548" gene 260713..261696 /locus_tag="AGROH133_03367" /db_xref="GeneID:10266013" CDS 260713..261696 /locus_tag="AGROH133_03367" /note="Oxidoreductase family, NAD-binding Rossmann fold; Predicted dehydrogenases and related proteins" /codon_start=1 /transl_table=11 /product="oxidoreductase protein" /protein_id="YP_004277566.1" /db_xref="GI:325291702" /db_xref="GeneID:10266013" /translation="MLRFGIISTAKIAQDHVIPAIQDARNCVVSAIASRDHAKARAVA DRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHVEWTIKAANAGKHVLCEKPIALKAE EIDAIIAARDDNGVVVSEAFMVTYSPVWAKVKELLASGAIGTLKHVQGAFSYFNRDPG NMRNIPELGGGALPDIGVYPTIVTRFATGAEPKRVQASVERDKEFGTDIYSSVRADFG GFELSFYLATQLAARQLMVFHGTYGYIEIKSPFNANRWGAEEIELTNQGHNQSQVFRF QDSRQYKLEAEAFARAVKGEGEVVTLESSRKNQLFIDAIYRAAEKDGWETV" misc_feature 260713..261693 /locus_tag="AGROH133_03367" /note="Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:31017" misc_feature 260716..261078 /locus_tag="AGROH133_03367" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 261112..261381 /locus_tag="AGROH133_03367" /note="Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; cl11611" /db_xref="CDD:159579" gene complement(261693..262064) /locus_tag="AGROH133_03368" /db_xref="GeneID:10266014" CDS complement(261693..262064) /locus_tag="AGROH133_03368" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277567.1" /db_xref="GI:325291703" /db_xref="GeneID:10266014" /translation="MRLRHFALTEVYGLAVDLSISFLLIFYIGIDPLAARLPGALAGL ATSWRLNHSNGDGRNELNGFLLNAVTLISRMVGVGLFALLQWRNPLVQPLVPLAFSAL AALVLALYGYRRLQKQRADQD" gene complement(262076..262318) /locus_tag="AGROH133_03373" /db_xref="GeneID:10266015" CDS complement(262076..262318) /locus_tag="AGROH133_03373" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277568.1" /db_xref="GI:325291704" /db_xref="GeneID:10266015" /translation="MIFLTATLLGVTAVALRSVFSIIFICLMVIGAYGVAMAISATAV PLMSLLLALAGYNFGVVSVVIGLLVLQRPRSTQPTL" gene 262509..264113 /gene="xseA" /locus_tag="AGROH133_03377" /db_xref="GeneID:10266016" CDS 262509..264113 /gene="xseA" /locus_tag="AGROH133_03377" /EC_number="3.1.11.6" /note="bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; Exonuclease VII, large subunit" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII large subunit" /protein_id="YP_004277569.1" /db_xref="GI:325291705" /db_xref="GeneID:10266016" /translation="MSDIFSNAALSNLAEFSVSELSGSIKRTVETAFDQVRVRGEISG YRGPHSSGHAYFSLKDDRARIDAVIWKGTFSRLKFRPEEGMEVIATGKVTTFPGSSKY QIVIESLEPAGAGALMALLEDRRRRLAAEGLFDAERKRRLPFMPRVIGVVTSPTGAVI RDILHRISDRFPVHVVVWPVKVQGEGSGEEVANAIRGFNALQPGGEIARPDVLIVARG GGSLEDLWSFNDEIVVRAAAESEIPLISAVGHETDTTLIDYAADVRAPTPTGAAEMAV PVRAELEAQLSGLAARLSGSVSRQMDNRRQGVRALVRALPSLDQLLALPRRRFDEAAS GLGRGLEMTTLNKRRAFERSASGLRPEILLNGLRQHRQRVTERMQRAEALVERRLLQA QSRISSTDSALRSLPARLLGQLERQKERVVTATRRADTAVLHRMAQNRSGLAAHDRIL QSLSYKNVLNRGYAVIRDEENRPLTRAAAIASGAVVSMEFADGRVAALTTGEATPSSD VQTPAAPKKKPVKPASSDPGNQGSLF" misc_feature 262539..263999 /gene="xseA" /locus_tag="AGROH133_03377" /note="exodeoxyribonuclease VII large subunit; Reviewed; Region: xseA; PRK00286" /db_xref="CDD:178962" misc_feature 262611..262847 /gene="xseA" /locus_tag="AGROH133_03377" /note="ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-...; Region: ExoVII_LU_OBF; cd04489" /db_xref="CDD:72961" misc_feature order(262617..262619,262764..262766,262770..262772, 262776..262778,262836..262838) /gene="xseA" /locus_tag="AGROH133_03377" /note="generic binding surface II; other site" /db_xref="CDD:72961" misc_feature order(262632..262640,262671..262682,262686..262688, 262704..262712,262716..262718,262761..262763, 262782..262790,262815..262823) /gene="xseA" /locus_tag="AGROH133_03377" /note="generic binding surface I; other site" /db_xref="CDD:72961" gene complement(264114..265316) /locus_tag="AGROH133_03378" /db_xref="GeneID:10266017" CDS complement(264114..265316) /locus_tag="AGROH133_03378" /note="Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily" /codon_start=1 /transl_table=11 /product="mandelate racemase / muconate lactonizing enzyme family protein" /protein_id="YP_004277570.1" /db_xref="GI:325291706" /db_xref="GeneID:10266017" /translation="MKITKLETVRVAERANLLWVLVHTDEGITGLGETFYGAETVETY VHEYIAPRVIGRDPLQIDLLAQDLVGYLGFRSSGAEVRGNSAFDIALWDIFGKATNQP IAQLLGGFSRREIRTYNTCAGTEYIKKATGQQTANYGLSGGKDYDDLNGFLHRADELA HSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFH SMWQLLPAMQIAKALTPYQTFWHEDPIKMDSLSSLTRYAAVSPAPISASETLGSRWAF RDLLETGAAGVVMLDISWCGGLSEARKIASMAEAWHLPVAPHDCTGPVVLCASTHLSL NAPNALVQESVRAFYKTWYRDLVTALPEVKNGMITVPPGAGLGMELHPDIEKTFTVSR RFSDAASI" misc_feature complement(264138..265316) /locus_tag="AGROH133_03378" /note="L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]; Region: COG4948" /db_xref="CDD:34556" misc_feature complement(264180..265313) /locus_tag="AGROH133_03378" /note="Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues...; Region: MR_like; cd03316" /db_xref="CDD:48191" misc_feature complement(order(264288..264290,264363..264365, 264444..264446,264513..264515,264591..264593, 264669..264671,264795..264797,264801..264803)) /locus_tag="AGROH133_03378" /note="active site pocket [active]" /db_xref="CDD:48191" gene complement(265371..266078) /locus_tag="AGROH133_03379" /db_xref="GeneID:10266018" CDS complement(265371..266078) /locus_tag="AGROH133_03379" /note="GntR, C-terminal, FCD domain; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004277571.1" /db_xref="GI:325291707" /db_xref="GeneID:10266018" /translation="MYKPISQETDLVSSAIGAITRHIRENELAPGAKLPSELSLSQQL GVSRTVVREAFRSLSAMRLIDVSVGKRATVATLDHGAMSLMFEHGIHTEQINIQQIYD VRRTIEVRTVTLAALRRTDVEALTILDHANNMERDFGNSDMVMEHDLAFHLAVARASK NPVFELILGAFQNVTRQTWPIGWKSRKSDAQRHAATELHIAIGQAIAAGDPQTASTLM ARHFDESVHALLAAGIA" misc_feature complement(265374..266078) /locus_tag="AGROH133_03379" /note="Transcriptional regulators [Transcription]; Region: FadR; COG2186" /db_xref="CDD:32369" misc_feature complement(265854..266027) /locus_tag="AGROH133_03379" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(265863..265874,265878..265883, 265911..265913,265920..265925,265929..265943, 265965..265970,265974..265976)) /locus_tag="AGROH133_03379" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(265410..265784) /locus_tag="AGROH133_03379" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene complement(266192..266692) /gene="pecS" /locus_tag="AGROH133_03380" /db_xref="GeneID:10266019" CDS complement(266192..266692) /gene="pecS" /locus_tag="AGROH133_03380" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family Blast2p vs K" /protein_id="YP_004277572.1" /db_xref="GI:325291708" /db_xref="GeneID:10266019" /translation="MSKEPIDHVDHILAQWRKERPDLDVEPMGLLGRLKRLTTHLGRE VEAVLLKHGLSSSAFDVLATLRRAGAPYRLSPGDLLAMTMVSSGTMTNRIDQLEKAGL VERIHNPQDRRSVLISLTERGFAIVEDAVSAHVENQQRLVAQLSEEERTALNKLVKRF LQGFEA" misc_feature complement(266243..266554) /gene="pecS" /locus_tag="AGROH133_03380" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 266774..267640 /gene="pecM" /locus_tag="AGROH133_03381" /db_xref="GeneID:10266020" CDS 266774..267640 /gene="pecM" /locus_tag="AGROH133_03381" /note="Protein of unknown function DUF6, transmembrane; Threonine/homoserine efflux transporter" /codon_start=1 /transl_table=11 /product="regulator protein pecM" /protein_id="YP_004277573.1" /db_xref="GI:325291709" /db_xref="GeneID:10266020" /translation="MKKNTTYAADVLVTALAPAIWGTTYFVTTEFLPHGYPFHVAMLR ALPAGILLLLLVRKLPEGIWWPRSLILGALNFSFFWAMLFVSAYRLPGGVAATVGAIQ PLIVIGLSRLFLAAPVRPLAIVAGLLGILGVALLVLAPGAAALDAVGVAAGLAGAVSM AFGTVLTRKWRPPVSNLTFTAWQLTAGGILLLPVAYFLEPALPAPTAANILGMAYLGI IGAALTYFLWFRGLSRIEPSAAASLGFLSPVVATLLGWLALGQSLTPAQIVGFVAVLF SIWLSQRSQLPK" misc_feature 266834..267604 /gene="pecM" /locus_tag="AGROH133_03381" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:162128" misc_feature 267248..267613 /gene="pecM" /locus_tag="AGROH133_03381" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene complement(267642..268880) /gene="ampS" /locus_tag="AGROH133_03392" /db_xref="GeneID:10266021" CDS complement(267642..268880) /gene="ampS" /locus_tag="AGROH133_03392" /EC_number="3.4.11.-" /note="Leucyl aminopeptidase (aminopeptidase T)" /codon_start=1 /transl_table=11 /product="aminopeptidase" /protein_id="YP_004277574.1" /db_xref="GI:325291710" /db_xref="GeneID:10266021" /translation="MTVSPIDPVKLEKLAEVAVKVGLQLQKDQDLVITAPLAALPLVR FLTKHAYLAGGGLVTTFYSDEETTLSRYRHASDANFDRASGWLYDGMAKAYANGAARL AIAGDNPMLLAEQDPAKVARANKANSTAYKPALEKISNFDINWNIISYPNPSWAKQVF PGVTEDEAVRKLADAIFAASRVDLADPVAAWAEHNANLAKRSAWLNGERFSSLHFTGP GTDVKIGLADGHEWHGGASTAKNGVTCNPNIPTEEVFTTPHALRVDGYVSSTKPLSHQ GTLIDDIQVKFEGGRIVEAKASKGEAVLNKVLDTDEGARRLGEVALVPHSSPISASGI LFYNTLFDENASCHIALGQCYSKCFVDGASLSQDQIKAQGGNSSLIHIDWMIGSDKVD IDGVKPDGSTVPVMRKGEWA" misc_feature complement(267648..268853) /gene="ampS" /locus_tag="AGROH133_03392" /note="Thermophilic metalloprotease (M29); Region: Peptidase_M29; pfam02073" /db_xref="CDD:145308" gene complement(268968..269444) /locus_tag="AGROH133_03393" /db_xref="GeneID:10266022" CDS complement(268968..269444) /locus_tag="AGROH133_03393" /note="YbaK_EbsC: ybaK/ebsC protein; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277575.1" /db_xref="GI:325291711" /db_xref="GeneID:10266022" /translation="MSKTTRATQMLKKADVNFTTVTYDYDPNADRIGLQAAEAIGEPP HLVLKTLMAELDGKPVCVVVPSDREVSMKKLAAAFGGKSASMMKPADAERATGYHVGG ISPFGQKKQVPTAIEAGAMTHSYVYMNGGQRGLQVRLSPGDAQAALKAVVAPLVAD" misc_feature complement(269016..269432) /locus_tag="AGROH133_03393" /note="This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS); Region: YbaK_deacylase; cd00002" /db_xref="CDD:88582" misc_feature complement(order(269058..269060,269139..269144, 269298..269300)) /locus_tag="AGROH133_03393" /note="putative deacylase active site [active]" /db_xref="CDD:88582" gene complement(269457..269939) /locus_tag="AGROH133_03394" /db_xref="GeneID:10266023" CDS complement(269457..269939) /locus_tag="AGROH133_03394" /note="arsC_related: conserved hypothetical protein; Arsenate reductase and related proteins, glutaredoxin family" /codon_start=1 /transl_table=11 /product="arsenate reductase" /protein_id="YP_004277576.1" /db_xref="GI:325291712" /db_xref="GeneID:10266023" /translation="MQLCSRSFGCQTLHFCMARIPCFRLRVEYGALFVMPEVQDKEAG NMTVTIYGIKNCDTMKKARSWLEANGVDYSFHDYKTAGIDQAHLETWCDAAGWETVLN RAGTTFKKLDDSQKADLTREKAIGLMLEQPSMIKRPVLEAKETITVGFKPETYQSLFA " misc_feature complement(269484..269798) /locus_tag="AGROH133_03394" /note="Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine...; Region: ArsC_Yffb; cd03035" /db_xref="CDD:48584" misc_feature complement(order(269490..269492,269529..269531, 269634..269636,269772..269774)) /locus_tag="AGROH133_03394" /note="putative catalytic residues [active]" /db_xref="CDD:48584" gene 269980..270183 /locus_tag="AGROH133_03395" /db_xref="GeneID:10266024" CDS 269980..270183 /locus_tag="AGROH133_03395" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277577.1" /db_xref="GI:325291713" /db_xref="GeneID:10266024" /translation="MPIIWASKMERKMRQVAKTSRNFFGETFAVLGAALSVSAAVRAH RKPARADLEALGIDGKAFDKVQL" gene complement(270244..270960) /locus_tag="AGROH133_03397" /db_xref="GeneID:10266025" CDS complement(270244..270960) /locus_tag="AGROH133_03397" /note="RNA ligase/cyclic nucleotide phosphodiesterase; 2'-5' RNA ligase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277578.1" /db_xref="GI:325291714" /db_xref="GeneID:10266025" /translation="MECELADERALRQLCFDGLEPQKIRRINPRFRNKLLLLLKPPRQ LAERIFVDASHHAKGRTTREAYPAELLHITLLCLGCFETIPHGLTSRLKAAMGAVNAR PVPVTLDASALFGNRNSLVLRNGGDLPEINALVKLLQRALRQANLPYIAAPSYTPHIT MIYGCGKIEPMPAGKPYSWLAGNFELVFSHNGETRHESLGRFALSAKADRYEPLESQL HLPDKLIGPRKRPNRKQAER" misc_feature complement(270316..270834) /locus_tag="AGROH133_03397" /note="2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]; Region: LigT; COG1514" /db_xref="CDD:31703" misc_feature complement(<270517..>270714) /locus_tag="AGROH133_03397" /note="NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961" /db_xref="CDD:196287" gene complement(271065..272642) /gene="guaA2" /locus_tag="AGROH133_03398" /db_xref="GeneID:10266026" CDS complement(271065..272642) /gene="guaA2" /locus_tag="AGROH133_03398" /EC_number="6.3.5.2" /note="contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase, PP-ATPase domain/subunit" /codon_start=1 /transl_table=11 /product="GMP synthase" /protein_id="YP_004277579.1" /db_xref="GI:325291715" /db_xref="GeneID:10266026" /translation="MTQIAHPDSILIIDFGSQVTQLIARRIREAGVYCEIHPFQNAAE AFEKLQPKGVIFSGGPASVTAEGSPRAPQAVFDSKVPILGICYGQQTLCTQLGGVVEG GHAAEFGRADIDIKKASPLFDGFWEQGKSYPVWMSHGDRVTKLPEGFEVIATSENAPF AIAADETRHYYTTMFHPEVVHTPDGGKLLSNFVHKIVGLKSDWTMAAYRAEMIRKIRD QVGTGRVLCALSGGVDSSVAAILIHEAIGDQLTCVYVDHGLMRLGESEQVVGMFRDHY NIPLVHVDAADMFLGQLSGVSDPEVKRKTIGRLFIEVFEAEAAKIAADGKGAPNFLAQ GTLYPDVIESVSFSGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRALGRELG LPESFIGRHPFPGPGLAIRCPGAVTREKLDILRKADAIYLDEIRKAGLYDTIWQAFAV LLPVQTVGVMGDYRTYDFVCALRAVTSVDGMTADFYPYDMNFLGRAATRIINEVRGIN RVVYDVTSKPPGTIEWE" misc_feature complement(271068..272627) /gene="guaA2" /locus_tag="AGROH133_03398" /note="GMP synthase; Reviewed; Region: guaA; PRK00074" /db_xref="CDD:178842" misc_feature complement(272064..272615) /gene="guaA2" /locus_tag="AGROH133_03398" /note="Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase; Region: GATase1_GMP_Synthase; cd01742" /db_xref="CDD:153213" misc_feature complement(order(272115..272117,272232..272234, 272382..272387,272463..272471,272589..272594)) /gene="guaA2" /locus_tag="AGROH133_03398" /note="AMP/PPi binding site [chemical binding]; other site" /db_xref="CDD:153213" misc_feature complement(order(272382..272384,272466..272468)) /gene="guaA2" /locus_tag="AGROH133_03398" /note="candidate oxyanion hole; other site" /db_xref="CDD:153213" misc_feature complement(order(272109..272111,272115..272117, 272385..272387)) /gene="guaA2" /locus_tag="AGROH133_03398" /note="catalytic triad [active]" /db_xref="CDD:153213" misc_feature complement(order(272121..272123,272229..272231, 272373..272375)) /gene="guaA2" /locus_tag="AGROH133_03398" /note="potential glutamine specificity residues [chemical binding]; other site" /db_xref="CDD:153213" misc_feature complement(271071..271973) /gene="guaA2" /locus_tag="AGROH133_03398" /note="The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched...; Region: GMP_synthase_C; cd01997" /db_xref="CDD:30184" misc_feature complement(order(271401..271445,271461..271535, 271548..271577,271605..271652,271683..271796, 271827..271859,271863..271895,271899..271973)) /gene="guaA2" /locus_tag="AGROH133_03398" /note="ATP Binding subdomain [chemical binding]; other site" /db_xref="CDD:30184" misc_feature complement(order(271500..271502,271878..271880, 271884..271886,271938..271949,271953..271961)) /gene="guaA2" /locus_tag="AGROH133_03398" /note="Ligand Binding sites [chemical binding]; other site" /db_xref="CDD:30184" misc_feature complement(order(271071..271139,271143..271169, 271188..271235,271245..271277,271284..271313, 271338..271376)) /gene="guaA2" /locus_tag="AGROH133_03398" /note="Dimerization subdomain; other site" /db_xref="CDD:30184" gene complement(272725..273363) /gene="pfs" /locus_tag="AGROH133_03399" /db_xref="GeneID:10266027" CDS complement(272725..273363) /gene="pfs" /locus_tag="AGROH133_03399" /EC_number="3.2.2.9" /note="Enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; Nucleoside phosphorylase" /codon_start=1 /transl_table=11 /product="5'-methylthioadenosine/S- adenosylhomocysteinenucleosidase" /protein_id="YP_004277580.1" /db_xref="GI:325291716" /db_xref="GeneID:10266027" /translation="MSYRLLHVADKSILFVMAASAEYGPHLQARIAPLMTGVGPVEAA ISVTAILAGLDAADHLPDLVVSLGSAGSRTLDQTGIYQAISVAYRDMDASAFGFEKGR TPFLDLPAEVALPLRIPDIAEARLSTGANVVSGAAYGSIDADMVEMETYAVLRACQRF GVPLIGLRGISDGREDVNHVDDWTEYLHIIDEKLADAVDRLCRAIEDGAITL" misc_feature complement(272728..273363) /gene="pfs" /locus_tag="AGROH133_03399" /note="Phosphorylase superfamily; Region: PNP_UDP_1; cl00303" /db_xref="CDD:193757" gene complement(273360..273809) /locus_tag="AGROH133_03400" /db_xref="GeneID:10266028" CDS complement(273360..273809) /locus_tag="AGROH133_03400" /note="Phenylacetic acid degradation-related protein, unchar_dom_1: uncharacterized domain 1; Uncharacterized protein, possibly involved in aromatic compounds catabolism" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277581.1" /db_xref="GI:325291717" /db_xref="GeneID:10266028" /translation="MEITDPGDFRQRIERSFARQGVVQAIGAQISRIEHRLVEIELPF HEKLTQQHGILHAGVIAAGLDTACTYAAYTIIEPEASLLTIEFKVNLMSPGRGERFLF RGEIIKPGNNLIVADGRAYALSDGPAKLIASMTGTMMVVKGREDITG" misc_feature complement(273390..273737) /locus_tag="AGROH133_03400" /note="PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443" /db_xref="CDD:48038" misc_feature complement(order(273528..273539,273558..273560, 273645..273647)) /locus_tag="AGROH133_03400" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(273537..273539,273543..273557, 273627..273629,273636..273638,273642..273644)) /locus_tag="AGROH133_03400" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:48038" misc_feature complement(order(273558..273560,273600..273605, 273612..273617,273639..273641)) /locus_tag="AGROH133_03400" /note="PHB binding site; other site" /db_xref="CDD:48038" gene complement(273890..274342) /gene="tspO" /locus_tag="AGROH133_03401" /db_xref="GeneID:10266029" CDS complement(273890..274342) /gene="tspO" /locus_tag="AGROH133_03401" /note="TspO/MBR family; Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)" /codon_start=1 /transl_table=11 /product="tryptophan-rich sensory protein" /protein_id="YP_004277582.1" /db_xref="GI:325291718" /db_xref="GeneID:10266029" /translation="MKNLSVYIIFVVVVVALGALIGINNVPGEWYQSLQKPPFNPPNW IFGPVWTTLYVMIGITGARTWIVRPAGTRMRLWFTQLVLNFLWSPIFFGMQSPTGALV IIVPMLICILAFIALTYSRDRISMWLFVPYALWVAFATLLNASIAVLN" misc_feature complement(273896..274264) /gene="tspO" /locus_tag="AGROH133_03401" /note="TspO/MBR family; Region: TspO_MBR; cl01379" /db_xref="CDD:194119" gene complement(274394..275488) /locus_tag="AGROH133_03407" /db_xref="GeneID:10266030" CDS complement(274394..275488) /locus_tag="AGROH133_03407" /note="Protein of unknown function DUF1513; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277583.1" /db_xref="GI:325291719" /db_xref="GeneID:10266030" /translation="MTSGKKPTLIDRRSFIKAAGIPFLATLAPGSLHALERADAVFAS AFRAHDGSYGIATVSERGEIIDRVALPARAHGMATSHATGMTVAFGRRPGTFFMAFDP ARRREPVVMHTPENRHFYGHGQFSPDGAILYASENDFDGNRGVIGLYDARNGFARIGE YDAHGIGTHDMTVSDDGRLIVIANGGIETHPDFGRTKLNVDSMQPSLVLLDAASGQLI QKHTMPDQLRQLSTRHVDLGDDGRVWFACQYEGPRNDLPPLVGHFSKGEDLAFVDLPE QTTVRLANYVGAIAVNRRDGLVGLTSPNGNAAVTLDAKTGRVVSETTVREAAGVAPAI KGIAVSSYDGFFEAIRSDVAWDQHIVRISG" misc_feature complement(274397..275476) /locus_tag="AGROH133_03407" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3490" /db_xref="CDD:33293" gene complement(275493..276614) /locus_tag="AGROH133_03408" /db_xref="GeneID:10266031" CDS complement(275493..276614) /locus_tag="AGROH133_03408" /note="Imelysin; Predicted periplasmic lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277584.1" /db_xref="GI:325291720" /db_xref="GeneID:10266031" /translation="MKNAMRKIPGLISVLLLLGMRPAMAQDVELMPPPPLDPVQVRGV MEKAVNGFIRPGYDHFRQSAEKLEGSMKAFCAAPSKTTDEAAKAAFADTVSSWSTIEI VRVGPVIEHNRFERVLYYPDKKGLGLKQVQRYLAEKDESVTSAESLKGKSVAAQGLGA LEFVLYGTDAGDLFDKKGDFRCRYGAAIAGNVANVAAELSDSWNAPDGAQKNWTQPGA DNPVFRDEREALVALLGILVHGAEAIRDQRIETFYKGPDKAKFPRTAIYWRSGLTWKS IAANIKAVQTLLHTADMVELVPPDQRSIVNSIDFIAKSMIRIAGTIDTNVEKALDDDQ QRAKVDYLLLNGKDLIYRLNDQYGGAIGLSSGFSFADGD" misc_feature complement(275496..276605) /locus_tag="AGROH133_03408" /note="Imelysin; Region: Peptidase_M75; cl09159" /db_xref="CDD:195809" gene complement(276614..278146) /locus_tag="AGROH133_03410" /db_xref="GeneID:10266032" CDS complement(276614..278146) /locus_tag="AGROH133_03410" /note="Protein of unknown function DUF1111; Predicted thiol oxidoreductase" /codon_start=1 /transl_table=11 /product="thiol oxidoreductase" /protein_id="YP_004277585.1" /db_xref="GI:325291721" /db_xref="GeneID:10266032" /translation="MLSMNSSLPRIRKPFFFAGAACLVASMVLAAPLRDDLTEKDQSR VQAVTAPTMDFTMPEPFEAMSGGATTSTHKADSGAFSHPSATMPFERKQDFKLGNALF QKLWVSSPSSTQASDGLGPLYNARSCQACHVKDGRGRPPLAGEDAVSLFLRLARPARN EAERAAIARHEVLNFPDETYGRQLQNVAIPGLAAEGKPVVTHIEKPVRLADGEVVMLR KPDYAVAGLHYGPLGVDTTLSARIAMPTLGLGLIEAIAEADILAGADPDDKNGDGISG RPAFVRDHRTGEVKLGRFGWKAQNASVRDQSASAFFHDIGISTPDAQNAYGDCTDVQK DCLAMPTGVQPRLGPVEAPDPILDLVTFYTENLAVPQRRDVGDPTVLRGKQLFYASGC TSCHTPKFVTRRDAADPMQSFQLIWPYSDFLLHDMGEELADGQQVGEASGQEWRTQPL WGIGLTRSVNGNGFYLHDGRARSLTEAILWHGGEAQKARDAFAALQKSDRQALLAFLE SL" misc_feature complement(276617..278056) /locus_tag="AGROH133_03410" /note="Predicted thiol oxidoreductase [Energy production and conversion]; Region: COG3488" /db_xref="CDD:33291" gene complement(278188..279465) /locus_tag="AGROH133_03412" /db_xref="GeneID:10266033" CDS complement(278188..279465) /locus_tag="AGROH133_03412" /note="Uncharacterized iron-regulated protein" /codon_start=1 /transl_table=11 /product="iron-regulated protein" /protein_id="YP_004277586.1" /db_xref="GI:325291722" /db_xref="GeneID:10266033" /translation="MIRKTILSASFALLAASATFTALPASAATDAADVVKHYADVAHA KYEDSLTTAKALDKAIDALIATPSEGTLKAAREAWIKARVPYQQSEVYRFGNPVVDAW EGKVNAWPLDEGLIDYVDGSYGTESDENELYVANIIANPKIKISGEDVDTSKITPELI ESLHEAGDVEANVTTGYHAIEFLLWGQDLNGTGPGAGNRPYTDYDKKNCTNGNCDRRG DYLKSASTLLIKDLQEMVDAWAPEGEATKTVEADPKAGLTAILTGMGSLSYGELAGER MKLGLLLHDPEEEHDCFSDNTYNSHLNDAIGIASAYTGEYTRVDGTKMTGASLSELVG AKDKALNDEMTAKLNKTLDAMHAMEKRAQTVEAYDQMIGEGNKEGNAVVQAAIDGLLD QTKTVERVIAALDLGKIELEGSASLDNPNAVFK" misc_feature complement(278191..279366) /locus_tag="AGROH133_03412" /note="Imelysin; Region: Peptidase_M75; cl09159" /db_xref="CDD:195809" gene complement(279621..280910) /gene="sun" /locus_tag="AGROH133_03415" /db_xref="GeneID:10266034" CDS complement(279621..280910) /gene="sun" /locus_tag="AGROH133_03415" /EC_number="2.1.1.-" /note="tRNA and rRNA cytosine-C5-methylases" /codon_start=1 /transl_table=11 /product="Sun protein" /protein_id="YP_004277587.1" /db_xref="GI:325291723" /db_xref="GeneID:10266034" /translation="MRLGGRLAGAIEVLADIEGRRRPVADALKDWGLAHRFAGSGDRA AIGNIVYDALRMKLSHAWLMDDDSAASLGYAVLLRQWGKSFSELAAEFDGDKFAPAAP DEEKQKAFLSRSLADAPAHIQGDIPEWVQASFETAFGEGWLAEAQALNQRPTLDLRAN TLKATRDKVLKALEESGAEATHIARQGVRIPAGEGPSRLPNVTAELSFQKGWFEVQDE GSQIVADLAGAHEGEQILDYCAGGGGKTLAMAASMNNKGQVHAFDADRKRLAPIIERL KRAGTRNVQVHDRAAGLVPFHEKFDRVLVDAPCTGTGTWRRRPDTKWRLTTRNLEERV QQQGEALSQAKGFVRPGGELLYVTCSVLPEENEQQVTRFCEENPQFYIGSALDRWQTT FGGNANKPHSSDGKTVTLTPATTDTDGFFFCVMKRKA" misc_feature complement(279627..280649) /gene="sun" /locus_tag="AGROH133_03415" /note="tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]; Region: Sun; COG0144" /db_xref="CDD:30493" misc_feature complement(<279801..280442) /gene="sun" /locus_tag="AGROH133_03415" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(280972..281340) /locus_tag="AGROH133_03416" /db_xref="GeneID:10266035" CDS complement(280972..281340) /locus_tag="AGROH133_03416" /note="Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Lipoproteins" /codon_start=1 /transl_table=11 /product="rare lipoprotein A" /protein_id="YP_004277588.1" /db_xref="GI:325291724" /db_xref="GeneID:10266035" /translation="MLNIRRITFTVATIAACSIIAPLQANAANGCGGASWYALSSKTA SGERMNAANMTAAHRSLRFGTKVKVTNARNGKAVVVRINDRGPFIKGRVLDLSKAAAK NIGMISSGTAKVCYEVVSAD" misc_feature complement(280993..281250) /locus_tag="AGROH133_03416" /note="Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; cl04011" /db_xref="CDD:186611" gene complement(281768..282640) /locus_tag="AGROH133_03418" /db_xref="GeneID:10266036" CDS complement(281768..282640) /locus_tag="AGROH133_03418" /note="NAD-dependent epimerase/dehydratase; Nucleoside-diphosphate-sugar epimerases" /codon_start=1 /transl_table=11 /product="nucleoside-diphosphate-sugar epimerase protein" /protein_id="YP_004277589.1" /db_xref="GI:325291725" /db_xref="GeneID:10266036" /translation="MHVMIFGAGYSGKAIANALKTEAATISGTTRSTDKFASLAATGM TPFLFDGAHLNDDLIATMANVTNLVQSIAPGKDGDPLLALLGDDLKRLLPKLEWIAYL STVGVYGDHDGAWVDEETPCRPVSARSVERVAAETAWAAAAEKAGVPLAILRLSGIYG PGRNSFMNFEKGTARRLVKKDQVFNRIRVEDIGAAHAFLARRNERGVFNVTDDEPAPP QDVVSFAATLMGVEPPPEQAFETADLTPMARSFYGENKRVSNARIRGLGFDFSFPEYK ISLTQLWESGLWRG" misc_feature complement(281822..282640) /locus_tag="AGROH133_03418" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature complement(281840..282634) /locus_tag="AGROH133_03418" /note="atypical (a) SDRs, subgroup 4; Region: SDR_a4; cd05266" /db_xref="CDD:187576" misc_feature complement(order(282167..282178,282245..282247, 282257..282259,282329..282337,282422..282430, 282545..282553,282608..282616,282620..282622)) /locus_tag="AGROH133_03418" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187576" gene complement(282644..283624) /locus_tag="AGROH133_03419" /db_xref="GeneID:10266037" CDS complement(282644..283624) /locus_tag="AGROH133_03419" /note="Domain of unknown function (DUF1730); Uncharacterized Fe-S protein" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster binding protein" /protein_id="YP_004277590.1" /db_xref="GI:325291726" /db_xref="GeneID:10266037" /translation="MAWMEETEARRAEPKTLWGDVRSIVMFGLNYGPEEDPRGVLSKA DKAAISVYARNRDYHDVIKGRLKEIATRFAARAGEDVKVFVDTAPVMEKPLAAAAGLG WQGKHTNLVSRTHGSWLFLGSMFTTAELCLDEAEKDHCGSCRACLDACPTAAFPAPYQ LDARRCISYLTIEHKGVIPHEFRPMIGNRIYGCDDCLAACPWNKFAASASEMKLQARE DLKEPSIAFLLTLDDAAFRSFFSGSPVKRIGRNRFIRNVLIAAGNSRDQQFVQQCKSL AEKDPAPEVRGMAAWALSQLMDSEEFRAYSAGRAPEPDPEAEMEWQLAEA" misc_feature complement(282740..283624) /locus_tag="AGROH133_03419" /note="Uncharacterized Fe-S protein [Energy production and conversion]; Region: COG1600" /db_xref="CDD:31788" misc_feature complement(283364..283594) /locus_tag="AGROH133_03419" /note="Domain of unknown function (DUF1730); Region: DUF1730; pfam08331" /db_xref="CDD:149403" gene complement(283875..284567) /gene="gst1" /locus_tag="AGROH133_03420" /db_xref="GeneID:10266038" CDS complement(283875..284567) /gene="gst1" /locus_tag="AGROH133_03420" /EC_number="2.5.1.18" /note="Glutathione S-transferase, C-terminal-like" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase" /protein_id="YP_004277591.1" /db_xref="GI:325291727" /db_xref="GeneID:10266038" /translation="MPTLYHSPMSTASRFVRLILSEYGFQTDLVEEQPWERRREFLAL NPAGTLPVYLDDNMRSLSGPYVLAEFLDETHGVLKRDRRLLAEDPFQRAEIRRLTEWF LQKMENDVTRPLVRERVYKLQMTAAQGGGPPDSKLLRTARNNVRQHIKYLEWLAGSRT WLAGDRLSYADLAAAASVSVLDYLGEINWLEAPIAKEWYQRLKSRPSFRPFLSERIPR LAPSSHYADLDF" misc_feature complement(283935..284564) /gene="gst1" /locus_tag="AGROH133_03420" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature complement(284352..284558) /gene="gst1" /locus_tag="AGROH133_03420" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:193797" gene 284725..285531 /gene="bacA" /locus_tag="AGROH133_03421" /db_xref="GeneID:10266039" CDS 284725..285531 /gene="bacA" /locus_tag="AGROH133_03421" /EC_number="3.6.1.27" /note="BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; Uncharacterized bacitracin resistance protein" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate phosphatase" /protein_id="YP_004277592.1" /db_xref="GI:325291728" /db_xref="GeneID:10266039" /translation="MGDQSIISALLLGIIEGLTEFIPVSSTAHVLLAGHFLGFKSPGN TFAVLIQLGAIIAILLVYFQKLVSIAVAMPTSAKARRFVLAVAVAFLPAAVIGALAHD FIKTVLFETPILICIVLVIGGVILLAVDRMPLKPRYTDIMDYPPSLAFKIGLFQCLAM VPGTSRSGATIVGALLMGTDKRSAAEFSFFLAMPTMLGAFVLDLYKNRDALSFDDSAL IAVGFIAAFVSGLFVVRSLLDFVSRRGFAPFAWWRIVIGSLGLAALLLYR" misc_feature 284737..285522 /gene="bacA" /locus_tag="AGROH133_03421" /note="Bacitracin resistance protein BacA; Region: BacA; cl00858" /db_xref="CDD:186224" gene complement(285633..285788) /locus_tag="AGROH133_03429" /db_xref="GeneID:10266040" CDS complement(285633..285788) /locus_tag="AGROH133_03429" /codon_start=1 /transl_table=11 /product="hypothetical signal peptide protein" /protein_id="YP_004277593.1" /db_xref="GI:325291729" /db_xref="GeneID:10266040" /translation="MGRSIALFFACAALVVLAGSFMAPGTVAAGKSGCAPAYGVDPCA TASISTN" gene complement(286137..287117) /locus_tag="AGROH133_03432" /db_xref="GeneID:10266041" CDS complement(286137..287117) /locus_tag="AGROH133_03432" /EC_number="1.6.5.3" /note="NAD-dependent epimerase/dehydratase; Predicted nucleoside-diphosphate-sugar epimerases" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone oxidoreductase 39 kd subunit" /protein_id="YP_004277594.1" /db_xref="GI:325291730" /db_xref="GeneID:10266041" /translation="MTLANLPPLVTVFGGSGFVGRHVVRMLAKRGYRIRVAVRRPDLA GFLQPLGNVGQISFAQANLRYRDSIVKAIEDADHVVNCVGILAESGRNTFDAVQEFGA KAIAEAARNAGATLTHISAIGADANSPTGYGRTKGRAEAAIHSVLPGAVILRPSIIFG PEDDFFNKFAKMARSLPFLPLIGGGKTKFQPVYVEDVAEAVARSVDGKLKPGAIYELG GQDVMTFRDCLEAVLAATYRQRPFVNLPFGVASMIGKIASLVPLITPPLTVDQVTMLK KDNVVSADAEKNGLTLEGIGITPVRVASVLPSYMVHYRPHGQFSNAGKAA" misc_feature complement(286263..287096) /locus_tag="AGROH133_03432" /note="Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702" /db_xref="CDD:31046" misc_feature complement(286281..287090) /locus_tag="AGROH133_03432" /note="NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs; Region: NDUFA9_like_SDR_a; cd05271" /db_xref="CDD:187579" misc_feature complement(order(286644..286655,286710..286712, 286722..286724,286755..286763,286827..286829, 286866..286874,286998..287006,287061..287072, 287076..287078)) /locus_tag="AGROH133_03432" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187579" misc_feature complement(order(286710..286712,286722..286724)) /locus_tag="AGROH133_03432" /note="active site" /db_xref="CDD:187579" gene complement(287239..287526) /locus_tag="AGROH133_03433" /db_xref="GeneID:10266042" CDS complement(287239..287526) /locus_tag="AGROH133_03433" /note="Protein of unknown function DUF1330; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277595.1" /db_xref="GI:325291731" /db_xref="GeneID:10266042" /translation="MAKGYWIARVDVRDNERYKDYVSTAKPAFERFGANFLARGGALT ELEGKARARNVIIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEMMIVEGI" misc_feature complement(287242..287526) /locus_tag="AGROH133_03433" /note="Protein of unknown function (DUF1330); Region: DUF1330; cl02288" /db_xref="CDD:194288" gene complement(287547..288254) /gene="pyrF" /locus_tag="AGROH133_03434" /db_xref="GeneID:10266043" CDS complement(287547..288254) /gene="pyrF" /locus_tag="AGROH133_03434" /EC_number="4.1.1.23" /note="type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; Orotidine-5'-phosphate decarboxylase" /codon_start=1 /transl_table=11 /product="orotidine 5`-phosphate decarboxylase" /protein_id="YP_004277596.1" /db_xref="GI:325291732" /db_xref="GeneID:10266043" /translation="MTAREKLIVGLDVPTVQQAEDIVSKIGDEVLFYKIGYQLVFAGG LEFARDLAQSGKNVFLDMKLLDIDNTVGSGVENIARMGMSMLTLHAYPKAMRAAVKAA EGSGLCLLGVTVLTSMDDADLAEAGYASDARSLVLRRAEQAREAGMGGIVCSAEESTA VREILGPDLAVVTPGIRPAGAEAGDQKRVMTPFDAIKAGSSHLVVGRPIVKAEDPKAA ARAILDDMLRASFPANQ" misc_feature complement(287589..288236) /gene="pyrF" /locus_tag="AGROH133_03434" /note="Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two...; Region: OMP_decarboxylase_like; cd04725" /db_xref="CDD:73387" misc_feature complement(order(287634..287639,287733..287735, 287907..287912,288066..288068,288072..288074, 288147..288149,288153..288155,288219..288221, 288225..288227)) /gene="pyrF" /locus_tag="AGROH133_03434" /note="active site" /db_xref="CDD:73387" misc_feature complement(order(287634..287636,287850..287852, 287910..287912,287955..287957,287982..287990, 288033..288038,288045..288050,288057..288062, 288066..288071,288138..288143,288147..288149)) /gene="pyrF" /locus_tag="AGROH133_03434" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73387" gene complement(288259..288855) /locus_tag="AGROH133_03435" /db_xref="GeneID:10266044" CDS complement(288259..288855) /locus_tag="AGROH133_03435" /note="Phosphoglycerate mutase family; Broad specificity phosphatase PhoE and related phosphatases" /codon_start=1 /transl_table=11 /product="Phosphoglycerate mutase" /protein_id="YP_004277597.1" /db_xref="GI:325291733" /db_xref="GeneID:10266044" /translation="MHALYITHPQVRIDPAVPVPEWGLSDLGAQRAFEASRLPWARAL RRIVSSAETKAIETARILAETSGADIEIIEALHENDRSATGFLTPPEFEKAADWFFAH PRESFHGWERAIDAQARIVNAVRAVLDRHDPQQPIAFVGHGGVGTLLKCHMEGVGISR SKDQPPGGGNLFRFPIAEFSLAAQRPTCDWTAMETWQG" misc_feature complement(288334..288798) /locus_tag="AGROH133_03435" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature complement(order(288427..288432,288694..288696)) /locus_tag="AGROH133_03435" /note="catalytic core [active]" /db_xref="CDD:132718" gene complement(288951..289544) /gene="pmtA" /locus_tag="AGROH133_03436" /db_xref="GeneID:10266045" CDS complement(288951..289544) /gene="pmtA" /locus_tag="AGROH133_03436" /EC_number="2.1.1.17" /note="NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins; Phospholipid N-methyltransferase" /codon_start=1 /transl_table=11 /product="phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase protein" /protein_id="YP_004277598.1" /db_xref="GI:325291734" /db_xref="GeneID:10266045" /translation="MALNLKQRFERKFEEEIRFFKGMVSQPKKVGAIVPTSSITARKM ASVIDPHSDLPVLELGPGTGVITKAILARGIKPERLTAIEYSTDFYNQLLRSYPGVNF INGDAFDLNATLGEHQGQMFDSVISAVPMLNFPMAARIKLLDELLKRVPHGRPVIQIS YGPISPIVAQPHLYHIRHFDFIVRNIPPAQLWTYTRA" misc_feature complement(288954..289481) /gene="pmtA" /locus_tag="AGROH133_03436" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(289742..290878) /gene="dnaN" /locus_tag="AGROH133_03437" /db_xref="GeneID:10266046" CDS complement(289742..290878) /gene="dnaN" /locus_tag="AGROH133_03437" /EC_number="2.7.7.7" /note="binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase sliding clamp subunit (PCNA homolog)" /codon_start=1 /transl_table=11 /product="DNA polymerase III beta subunit" /protein_id="YP_004277599.1" /db_xref="GI:325291735" /db_xref="GeneID:10266046" /translation="MKAVASMRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRAS GANLDMKATDLDLEITEATPAMVEQAGATTVPAHLLYEIVRKLPDGSEVLLATNPDGS TMTVASGRSKFSLQCLPETDFPDLTAGTFSHTFKLKATDLKMLIDRTQFAISTEETRY YLNGIFFHTIESNGDLKLRAVATDGHRLARADVDAPSGSEGMPGIIIPRKTVGELQKL MDNPELDVTVEVSDAKIRLTIGSVVLTSKLIDGTFPDYQRVIPTGNDKEMRVDCQTFA RAVDRVSTISSERGRAVKLALTNGQLTLTVNNPDSGSATEEVAVGYDNDSMEIGFNAK YLLDITSQLSGEDAIFLLADAGSPTLVRDTAGDDALYVLMPMRV" misc_feature complement(289745..290860) /gene="dnaN" /locus_tag="AGROH133_03437" /note="DNA polymerase III subunit beta; Validated; Region: PRK05643" /db_xref="CDD:180180" misc_feature complement(289748..290860) /gene="dnaN" /locus_tag="AGROH133_03437" /note="Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the...; Region: beta_clamp; cd00140" /db_xref="CDD:29053" misc_feature complement(order(290249..290251,290624..290626, 290645..290647,290789..290791)) /gene="dnaN" /locus_tag="AGROH133_03437" /note="putative DNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29053" misc_feature complement(order(289931..289936,290027..290029, 290543..290545,290549..290551,290633..290635, 290642..290644)) /gene="dnaN" /locus_tag="AGROH133_03437" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29053" misc_feature complement(order(289748..289759,289883..289885, 290315..290326,290330..290332)) /gene="dnaN" /locus_tag="AGROH133_03437" /note="beta-clamp/clamp loader binding surface; other site" /db_xref="CDD:29053" misc_feature complement(order(289748..289759,289874..289876, 289955..289960,289997..289999,290102..290104, 290321..290326,290330..290332)) /gene="dnaN" /locus_tag="AGROH133_03437" /note="beta-clamp/translesion DNA polymerase binding surface; other site" /db_xref="CDD:29053" gene 291128..292069 /locus_tag="AGROH133_03438" /db_xref="GeneID:10266047" CDS 291128..292069 /locus_tag="AGROH133_03438" /EC_number="2.1.1.-" /note="Tetrapyrrole (Corrin/Porphyrin) methylases; Predicted methyltransferases" /codon_start=1 /transl_table=11 /product="tetrapyrrole methylase family protein" /protein_id="YP_004277600.1" /db_xref="GI:325291736" /db_xref="GeneID:10266047" /translation="MIGSRVTEEISNSDAGQATKSFRIGTATIPARPLEPALYLVATP IGNLGDITIRALETLASADVLACEDTRVTRILLERYGIRTRPLSYHEHNAQEAGPKLI AALEAGKSVALVSDAGTPLVSDPGYRLGQLALEAGHRVVPVPGASAPLAALVGSGMPS DAFLFAGFLPVKDRGKRDRFAELAKIPATLMFFESPRRIGTSVKVASEVLGRDRRAVV CRELTKTFEEFRRGTLGELAEYYDEDRVVKGEIVLLIEPPSYDEIPDIEDVERLLKDL VTTMPAARAAAEAAKLTGLPRKELYQRLLDMKDADGR" misc_feature 291221..292051 /locus_tag="AGROH133_03438" /note="Predicted methyltransferases [General function prediction only]; Region: COG0313" /db_xref="CDD:30661" misc_feature 291239..292045 /locus_tag="AGROH133_03438" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene 292059..292427 /locus_tag="AGROH133_03439" /db_xref="GeneID:10266048" CDS 292059..292427 /locus_tag="AGROH133_03439" /note="Protein of unknown function UPF0102; Predicted endonuclease distantly related to archaeal Holliday junction resolvase" /codon_start=1 /transl_table=11 /product="endonuclease" /protein_id="YP_004277601.1" /db_xref="GI:325291737" /db_xref="GeneID:10266048" /translation="MAADGQTNKRRKAERRGHAAEYWAALYLLFRGYRILAIRYRTRL GEIDLIARKKDVVAIVEVKARPSGAGAVDAVGFRSQQRIRAAADIWLSRRKDAARFSL RFDIVAVLPRRLPQHFIDAF" misc_feature 292083..292424 /locus_tag="AGROH133_03439" /note="Uncharacterised protein family UPF0102; Region: UPF0102; cl00516" /db_xref="CDD:186051" gene 292439..292999 /gene="nodL" /locus_tag="AGROH133_03440" /db_xref="GeneID:10266049" CDS 292439..292999 /gene="nodL" /locus_tag="AGROH133_03440" /EC_number="2.3.1.79" /note="Trimeric LpxA-like; Acetyltransferase (isoleucine patch superfamily)" /codon_start=1 /transl_table=11 /product="nodulation protein L" /protein_id="YP_004277602.1" /db_xref="GI:325291738" /db_xref="GeneID:10266049" /translation="MSTEREKMAAGEWYCCMDAELDVLRARARRAVHQHNTSPPDERE AMSPLLRALFASVAEGAFIEAPFHCAYGFNITLGANVYLNTGCVILDSAPVRIGDGAM LGPAVQIYCAEHHLDPVARSQGIEIAKPVTIGRDVWIGGGAILLAGITIGDGAIVGAG SVVTRDVLAGTTVVGNPARPIKRKDA" misc_feature 292439..292987 /gene="nodL" /locus_tag="AGROH133_03440" /note="maltose O-acetyltransferase; Provisional; Region: PRK10092" /db_xref="CDD:182235" misc_feature 292475..292981 /gene="nodL" /locus_tag="AGROH133_03440" /note="Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6...; Region: LbH_MAT_GAT; cd03357" /db_xref="CDD:100047" misc_feature order(292484..292486,292511..292513,292646..292648, 292682..292684,292688..292690,292706..292708, 292712..292714,292742..292744,292748..292750, 292766..292768,292772..292774,292778..292780, 292784..292786,292805..292810,292814..292816, 292850..292852,292856..292861,292874..292876, 292910..292915,292922..292924,292928..292933, 292958..292969,292973..292975) /gene="nodL" /locus_tag="AGROH133_03440" /note="active site" /db_xref="CDD:100047" misc_feature order(292484..292486,292511..292513,292646..292648, 292682..292684,292688..292690,292706..292708, 292712..292714,292742..292744,292772..292774, 292778..292780,292805..292810,292814..292816) /gene="nodL" /locus_tag="AGROH133_03440" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100047" misc_feature order(292514..292516,292523..292525,292535..292537, 292556..292558,292634..292636,292640..292645, 292691..292696,292736..292738,292742..292744, 292754..292756,292760..292762,292766..292768, 292778..292780,292784..292792,292796..292801, 292817..292819,292823..292825,292844..292846, 292850..292852,292859..292867,292874..292876, 292898..292900,292904..292906,292913..292918, 292928..292930,292964..292966) /gene="nodL" /locus_tag="AGROH133_03440" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100047" misc_feature order(292766..292768,292772..292774,292778..292780, 292784..292786,292850..292852,292856..292861, 292874..292876,292910..292915,292928..292933, 292958..292963,292967..292969) /gene="nodL" /locus_tag="AGROH133_03440" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100047" gene 293133..294431 /gene="ugpB" /locus_tag="AGROH133_03442" /db_xref="GeneID:10266050" CDS 293133..294431 /gene="ugpB" /locus_tag="AGROH133_03442" /note="Bacterial extracellular solute-binding protein, family 1; ABC-type sugar transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="sn-glycerol 3-phosphate ABC transporter substrate-binding protein" /protein_id="YP_004277603.1" /db_xref="GI:325291739" /db_xref="GeneID:10266050" /translation="MLKKISMAAVAVSISATSSMAATNITWWHGMGGRNGEVINEVSQ KFNEAQKECALTPVSKGSYEEALASGIAAFRSGEQPNILQVFDAGAATIINAKGAVIP AEDLINKAGYKFDREAFINGVRYFYAAADGKFVGMPFNTSAPIMYVNDEALKKAGVEA PKTWEDFEKVAPKLKEAGYIPLVQSQLTWQFTENFFSRNNIQFATNNNGYDSVTDTKL KVTDPNLVMMFDKLKDWKDKGLFAYYGAGWNDNQKPFEEGKVALWIGSSGSFGGLQKT ASMPFSATFLPYWGSIKGAGTNSFIGGAALFAMSGKSEAENKCVADFFQFLTSPEIQV FYHKATGYVAITTAAYEKAKAEGFYKEKPAAEVGIQQLSLPSGEWSKGYRLGFYPQIR SIMEREYNRIFSGEVTPKDAFDIIEKEGNDLLARFAKTAG" misc_feature 293205..294428 /gene="ugpB" /locus_tag="AGROH133_03442" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature 293205..294413 /gene="ugpB" /locus_tag="AGROH133_03442" /note="ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653" /db_xref="CDD:31839" gene 294516..295490 /gene="ugpA" /locus_tag="AGROH133_03444" /db_xref="GeneID:10266051" CDS 294516..295490 /gene="ugpA" /locus_tag="AGROH133_03444" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type sugar transport systems, permease components" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate ABC transporter membrane protein" /protein_id="YP_004277604.1" /db_xref="GI:325291740" /db_xref="GeneID:10266051" /translation="MAYTSSQPRLARFLSGRSAKTGKTAKAAEASMKRVQFSSSYVPY LFLAPQLAVIFIFFYWPSVQAVQSSFFIEDPFGFGATFVGFANYSDAIFNPEYLNIAK FTVVFTVLVTFFSLALGLLLAVKADAVIRGSSAYKTLLISVYAIAPPVAGLIGMMFFD QHIGPFVKMAAFLGWDMKVGLNYFDTAFAMIAVAVWKQIPYNFIFFLSGLQGVSVAVR EAAAIDCRSSVRRFWTVIMPLLAPTAFFLLIINITYSLFDTFGIIDVMVKDKAANNPI TLVYKVFLDGFRGNDIGGSSAQSVILMLVVFVLTIIQFRFIEKRIHYN" misc_feature 294645..295472 /gene="ugpA" /locus_tag="AGROH133_03444" /note="ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]; Region: LplB; COG4209" /db_xref="CDD:33938" misc_feature 294648..295484 /gene="ugpA" /locus_tag="AGROH133_03444" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 295502..296344 /gene="ugpE" /locus_tag="AGROH133_03451" /db_xref="GeneID:10266052" CDS 295502..296344 /gene="ugpE" /locus_tag="AGROH133_03451" /note="ABC-type sugar transport system, permease component" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate ABC transporter membrane protein" /protein_id="YP_004277605.1" /db_xref="GI:325291741" /db_xref="GeneID:10266052" /translation="MYKTKPLDHLVLIIGALFLILPVVVAFMTSTHTAAEIHRSGLTL VPGDNFVGTYEKVLTQKGGFTGQITGLNMVLNSLILGIGFAVGKIVLSMMAAYAIVYF RFRFATLAFWIIFTTLLLPLEVRIMPSYEVMSKLGLLNSYTGLIVPLLASATGTFYFR QFFKSIPEELLEAARIDGAGPVKFFIDVIIPLSRTMMAAIFIIMFVYGWNQYLWPMLM TTDESFFTLMRGIKSILQVWVGSQIPDYNEAFALAVLAMLPPVMIVVIFQRWFIKGLT ESDK" misc_feature 295511..296335 /gene="ugpE" /locus_tag="AGROH133_03451" /note="ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395" /db_xref="CDD:30744" misc_feature 295724..296278 /gene="ugpE" /locus_tag="AGROH133_03451" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(295769..295774,295781..295786,295799..295801, 295829..295840,295844..295873,295880..295885, 295889..295891,295946..295951,295955..295957, 295961..295963,295970..295975,295979..295981, 295991..295996,296003..296005,296054..296056, 296096..296101,296108..296110,296129..296140, 296147..296152,296201..296206,296234..296239, 296246..296251,296255..296260,296267..296272) /gene="ugpE" /locus_tag="AGROH133_03451" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(295847..295891,296129..296146) /gene="ugpE" /locus_tag="AGROH133_03451" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(295889..295891,296147..296149,296183..296185, 296204..296206,296234..296236) /gene="ugpE" /locus_tag="AGROH133_03451" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(296006..296044,296060..296065,296075..296077) /gene="ugpE" /locus_tag="AGROH133_03451" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 296356..297456 /gene="ugpC" /locus_tag="AGROH133_03458" /db_xref="GeneID:10266053" CDS 296356..297456 /gene="ugpC" /locus_tag="AGROH133_03458" /EC_number="3.6.3.20" /note="ABC-type sugar transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate ABC transporter ATPase" /protein_id="YP_004277606.1" /db_xref="GI:325291742" /db_xref="GeneID:10266053" /translation="MAAIEISQVCKDYHGGVRAVHHVDIDIRDGEFIVLVGPSGCGKS TLLRMVAGLEDISEGTVKIGDRVVNQVDPADRDIAMVFQNYALYPHMSVRQNLEYGLK NRKTPKAEIDARVAEAARMLQLEPYLERKPRALSGGQRQRVAMGRAIVRKPAAFLFDE PLSNLDAKLRVSMRGEIKRLQKRLGTTSIYVTHDQLEAMTLADRLVVLNGGRIEQIGA PLEVYHTPASTFVASFIGSPAMNLLNGELHADSLAVGPSLIALNGFAPTSGPVTVGMR AEDFRLAAAGELGFSLRVEYIEELGSQRLIHGMIGDQNLTVAFSPEVEIPATLSVAIS PDKLHFFSSETGKRIAGKAEQAVAQPVQLATA" misc_feature 296356..297402 /gene="ugpC" /locus_tag="AGROH133_03458" /note="glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650" /db_xref="CDD:183258" misc_feature 296365..297006 /gene="ugpC" /locus_tag="AGROH133_03458" /note="The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two...; Region: ABC_MalK_N; cd03301" /db_xref="CDD:73060" misc_feature 296464..296487 /gene="ugpC" /locus_tag="AGROH133_03458" /note="Walker A/P-loop; other site" /db_xref="CDD:73060" misc_feature order(296473..296478,296482..296490,296602..296604, 296830..296835,296932..296934) /gene="ugpC" /locus_tag="AGROH133_03458" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73060" misc_feature 296593..296604 /gene="ugpC" /locus_tag="AGROH133_03458" /note="Q-loop/lid; other site" /db_xref="CDD:73060" misc_feature 296758..296787 /gene="ugpC" /locus_tag="AGROH133_03458" /note="ABC transporter signature motif; other site" /db_xref="CDD:73060" misc_feature 296818..296835 /gene="ugpC" /locus_tag="AGROH133_03458" /note="Walker B; other site" /db_xref="CDD:73060" misc_feature 296842..296853 /gene="ugpC" /locus_tag="AGROH133_03458" /note="D-loop; other site" /db_xref="CDD:73060" misc_feature 296920..296940 /gene="ugpC" /locus_tag="AGROH133_03458" /note="H-loop/switch region; other site" /db_xref="CDD:73060" gene 297567..298079 /locus_tag="AGROH133_03459" /db_xref="GeneID:10266054" CDS 297567..298079 /locus_tag="AGROH133_03459" /note="Protein of unknown function (DUF861); Predicted enzyme of the cupin superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277607.1" /db_xref="GI:325291743" /db_xref="GeneID:10266054" /translation="MPLKMMFAAAATMAIRTVPILPASLRRAKDESVVSASCTDLRLQ PAPINPDWIISGDPQARAADHSRSGDRASSTAMWDCTAGEFRWFFGWDETVYILEGEV HVTAEDGTVSILRVGDVAYFRAGTWATWRVDEYVRKVAFMRRPFPTALALAYRVKNKL FAGRSYKLAA" misc_feature 297669..297998 /locus_tag="AGROH133_03459" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene 298324..299283 /gene="gshB" /locus_tag="AGROH133_03460" /db_xref="GeneID:10266055" CDS 298324..299283 /gene="gshB" /locus_tag="AGROH133_03460" /EC_number="6.3.2.3" /note="The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)" /codon_start=1 /transl_table=11 /product="glutathione synthetase" /protein_id="YP_004277608.1" /db_xref="GI:325291744" /db_xref="GeneID:10266055" /translation="MAKIKNVAIQMDHVSGINIAGDSTFAMSLEAQARGYRLFHYTPE RLSMRDGKIYATVEQMELRDIKGDHFSLSEPERVDLSTMDVIHLRQDPPFDMAYITST HLLERIHPKTLVVNDPAWVRNSPEKIFVTEFADLMPKTLITKDVSEIARFRNEMGDII LKPLYGNGGAGVFHSARDDRNFSSLLEMFGQMFREPYIAQEYLPDVRKGDKRILLVDG EPVGAINRVPAENDARSNMHAGGRPEPTELTAREKEICRRIGPALRERGFLFVGIDVI GDYLTEINVTSPTGIREVQKFGGADVASLLWDAIEKKREAQDF" misc_feature 298339..299274 /gene="gshB" /locus_tag="AGROH133_03460" /note="glutathione synthetase; Provisional; Region: PRK05246" /db_xref="CDD:179971" misc_feature 298339..298689 /gene="gshB" /locus_tag="AGROH133_03460" /note="Prokaryotic glutathione synthetase, N-terminal domain; Region: GSH-S_N; pfam02951" /db_xref="CDD:190485" misc_feature 298699..299226 /gene="gshB" /locus_tag="AGROH133_03460" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene 299512..300981 /locus_tag="AGROH133_03461" /db_xref="GeneID:10266056" CDS 299512..300981 /locus_tag="AGROH133_03461" /EC_number="6.6.1.1" /note="Mg chelatase-related protein; Predicted ATPase with chaperone activity" /codon_start=1 /transl_table=11 /product="magnesium chelatase family protein" /protein_id="YP_004277609.1" /db_xref="GI:325291745" /db_xref="GeneID:10266056" /translation="MCRSRCRLWSHPERSASKAVAESRERVQAALHASGLALPAKKVT VNLAPADLPKEGSHFDLPIALGLMAALGAIPAEALGQYVVLGELNLDGTIGTVSGALP AAIGANALGKGLICPADSGPEAAWAGAGIDILAPRSLIALANHFRGTQLLSRPMPAIR ANPVNLPDLADIKGQETARRALEVAAAGGHNLLMVGPPGSGKSMLAARLPSILPPLEA AELLEVSMVHSIAGQLSGGKLSDRRPFRTPHHSATMAALIGGGLRAKPGEASLAHHGV LFLDEFPEFAPQVLDALRQPLETGECIIARANHRVTYPAEIQLVAAMNPCRCGRAGEP GFTCARGPRCMTDYQARISGPLMDRIDIRIDVPAVSATDLIRPMTAEPSAVVAARVAR ARLAQQERYAAAGFSGIRTNARCTTTLIEKYAEPDVSGLQLLRDAAERLKFSARGYHR ILKVARTLADLDGKQTVGRIHVAEAISYRIADEGLTAAA" misc_feature 299557..300960 /locus_tag="AGROH133_03461" /note="Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]; Region: COG0606" /db_xref="CDD:30951" misc_feature 300028..300612 /locus_tag="AGROH133_03461" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 300097..300120 /locus_tag="AGROH133_03461" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(300100..300123,300349..300351,300544..300546) /locus_tag="AGROH133_03461" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 300337..300354 /locus_tag="AGROH133_03461" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 300586..300588 /locus_tag="AGROH133_03461" /note="arginine finger; other site" /db_xref="CDD:99707" gene complement(301098..302066) /gene="cysK" /locus_tag="AGROH133_03462" /db_xref="GeneID:10266057" CDS complement(301098..302066) /gene="cysK" /locus_tag="AGROH133_03462" /EC_number="2.5.1.47" /codon_start=1 /transl_table=11 /product="Cysteine synthase" /protein_id="YP_004277610.1" /db_xref="GI:325291746" /db_xref="GeneID:10266057" /translation="MPEARKPGRGRVYSSITETIGDTPIVRLDKLAREKGVKANLLAK LEFFNPIASVKDRIGVAMIEALEAQGKITPGKTTLVEPTSGNTGIALAFAAAAKGYKL ILTMPETMSVERRKMLALLGAELVLTEGPKGMKGAIAKAQELAETLPDAIIPQQFENP ANPDIHRKTTAEEIWNDTEGAVDIFVSGIGTGGTITGTGQVLKSRKPEVKVIAVEPAD SPVLSGGNPGPHKIQGIGAGFAPAILDTGIYDEIVTVTNDDAFEIARLVAKLEGVPVG ISSGAALAAAIKVGAREENAGKNIVVIIPSFAERYLSTALFEGLGL" misc_feature complement(301116..302021) /gene="cysK" /locus_tag="AGROH133_03462" /note="cysteine synthases; Region: cysKM; TIGR01136" /db_xref="CDD:162219" misc_feature complement(301128..302006) /gene="cysK" /locus_tag="AGROH133_03462" /note="CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine...; Region: CBS_like; cd01561" /db_xref="CDD:107204" misc_feature complement(order(301131..301133,301140..301142, 301170..301172,301245..301253,301257..301265, 301536..301541,301704..301709,301716..301721, 301728..301733,301779..301781,301788..301790, 301917..301919,301923..301925,301941..301943, 301986..301994)) /gene="cysK" /locus_tag="AGROH133_03462" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:107204" misc_feature complement(order(301149..301154,301233..301235, 301365..301367,301485..301502,301809..301811, 301902..301904)) /gene="cysK" /locus_tag="AGROH133_03462" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107204" misc_feature complement(301902..301904) /gene="cysK" /locus_tag="AGROH133_03462" /note="catalytic residue [active]" /db_xref="CDD:107204" gene complement(302223..302840) /gene="rhtB" /locus_tag="AGROH133_03463" /db_xref="GeneID:10266058" CDS complement(302223..302840) /gene="rhtB" /locus_tag="AGROH133_03463" /note="Putative threonine efflux protein" /codon_start=1 /transl_table=11 /product="RhtB family transporter" /protein_id="YP_004277611.1" /db_xref="GI:325291747" /db_xref="GeneID:10266058" /translation="MTLTTLLAYATALFIAAAIPGPGMTAIVARALGSGFRETFFMGL GLVLGDMIYLTGVILGLAFVAQTFQEAFMVLKFAGAAYLLYIAWKLWTAGLLPQDLKA KKSTSIPMSFLSGLLITLGNPKTMLFYVALVPTLIDIRMIGPSEYATLLALTFIVLMA VLLPYILLAAKARNLLKRPSALTILNRTAAGILAGTATVIAIRST" misc_feature complement(302229..302786) /gene="rhtB" /locus_tag="AGROH133_03463" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene complement(302917..303387) /gene="dut" /locus_tag="AGROH133_03471" /db_xref="GeneID:10266059" CDS complement(302917..303387) /gene="dut" /locus_tag="AGROH133_03471" /EC_number="3.6.1.23" /note="catalyzes the formation of dUMP from dUTP; dUTPase" /codon_start=1 /transl_table=11 /product="deoxyuridine 5'-triphosphate nucleotidohydrolase" /protein_id="YP_004277612.1" /db_xref="GI:325291748" /db_xref="GeneID:10266059" /translation="MTVQNDNRPLLRLVRLANGADLELPSYETGGAAGMDLRAAVPAD EPLTLQPGERALVPTGFVFEVPQGYEAQIRPRSGLAIKNGITCLNSPGTVDSDYRGEV KVILANLGQADFVIERGMRIAQMVIAPVTQVTISEVSETSETARGAGGFGSTGL" misc_feature complement(303007..303291) /gene="dut" /locus_tag="AGROH133_03471" /note="Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557" /db_xref="CDD:143638" misc_feature complement(order(303016..303018,303028..303030, 303037..303051,303061..303063,303067..303069, 303073..303075,303079..303081,303100..303102, 303109..303111,303127..303135,303151..303168, 303172..303174,303220..303222,303226..303231, 303244..303246,303286..303291)) /gene="dut" /locus_tag="AGROH133_03471" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:143638" misc_feature complement(order(303079..303084,303094..303096, 303103..303111,303154..303162)) /gene="dut" /locus_tag="AGROH133_03471" /note="active site" /db_xref="CDD:143638" gene 303478..305061 /gene="prfC" /locus_tag="AGROH133_03472" /db_xref="GeneID:10266060" CDS 303478..305061 /gene="prfC" /locus_tag="AGROH133_03472" /note="Elongation factor Tu GTP binding domain; Peptide chain release factor RF-3" /codon_start=1 /transl_table=11 /product="peptide chain release factor 3" /protein_id="YP_004277613.1" /db_xref="GI:325291749" /db_xref="GeneID:10266060" /translation="MAETLAEAVSRRRTFAIIAHPDAGKTTLTEKLLLFGGAIQLAGE VKAKKDRIQTRSDWMKIERERGISVVTSVMTFEYNDRVFNILDTPGHEDFADDTYRTL TAVDAAIMVIDAAKGIEPRTLKLFEVCRMRDIPIITFINKMDRESRDPFEILDEVEEK LALDTAPITWPVGRAKSFCGAYNLAENTFRGNDTQVDGLSVNGPQAVADRLPENERKV FIEETELALEACRPFDRQAFLEGHMTPVFFGSALRNFGVRDLINALGDFAPPPRDQVA DTRTVHAAEDKMTAFVFKIQANMDPNHRDRIAFARICSGKLERGMKARLSRTGKLMGL TAPQFFFASQRQLADTAFAGDVVGIPNHGTLRIGDTLTEGENLVFQGVPNFSPEILRR VRLEDAMKAKKLKEALQQMAEEGVVQLFSPEDGSPAIVGVVGALQLDVLKERLMGEYG LPVSFEMSRFSVCRWISSDQPAEMDKFLNVKRGDIARDLDGDPVFLAQDAFSLRYESE RFPAIKMVAIKEYHVAKAA" misc_feature 303478..305040 /gene="prfC" /locus_tag="AGROH133_03472" /note="Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]; Region: PrfC; COG4108" /db_xref="CDD:33865" misc_feature 303508..304290 /gene="prfC" /locus_tag="AGROH133_03472" /note="RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and...; Region: RF3; cd04169" /db_xref="CDD:133369" misc_feature 303532..303555 /gene="prfC" /locus_tag="AGROH133_03472" /note="G1 box; other site" /db_xref="CDD:133369" misc_feature order(303535..303537,303541..303543,303553..303558, 303565..303567,303574..303579,303691..303696, 303748..303753,303820..303825,303931..303933, 303943..303945) /gene="prfC" /locus_tag="AGROH133_03472" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133369" misc_feature order(303541..303558,303898..303903,303907..303909, 304225..304233) /gene="prfC" /locus_tag="AGROH133_03472" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133369" misc_feature 303658..303693 /gene="prfC" /locus_tag="AGROH133_03472" /note="Switch I region; other site" /db_xref="CDD:133369" misc_feature 303679..303681 /gene="prfC" /locus_tag="AGROH133_03472" /note="G2 box; other site" /db_xref="CDD:133369" misc_feature 303736..303747 /gene="prfC" /locus_tag="AGROH133_03472" /note="G3 box; other site" /db_xref="CDD:133369" misc_feature 303742..303798 /gene="prfC" /locus_tag="AGROH133_03472" /note="Switch II region; other site" /db_xref="CDD:133369" misc_feature 303898..303909 /gene="prfC" /locus_tag="AGROH133_03472" /note="G4 box; other site" /db_xref="CDD:133369" misc_feature 304225..304233 /gene="prfC" /locus_tag="AGROH133_03472" /note="G5 box; other site" /db_xref="CDD:133369" misc_feature 304345..304599 /gene="prfC" /locus_tag="AGROH133_03472" /note="RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the...; Region: RF3_II; cd03689" /db_xref="CDD:58080" gene 305132..306337 /gene="dfp" /locus_tag="AGROH133_03473" /db_xref="GeneID:10266061" CDS 305132..306337 /gene="dfp" /locus_tag="AGROH133_03473" /EC_number="6.3.2.5" /note="catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; Phosphopantothenoylcysteinesynthetase/decarboxylase" /codon_start=1 /transl_table=11 /product="bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase" /protein_id="YP_004277614.1" /db_xref="GI:325291750" /db_xref="GeneID:10266061" /translation="MTLSGKHILLIISGGIAAYKSLDLIRRLKERGAKVTPVMTKGAQ EFVTPLAVGALSATHVFTELFSRQDEQDVGHIRLARECDLVLVAPATADLMAKMANGL ADDLASTILLATDRKVLVAPAMNPKMWSAKPTARNVETLKKDGVFFIGPMAGEMAEKG EAGLGRMAEPLQIVQGVEALLDGGRKSLIGRTAIVTSGPTHEPIDPVRYIANRSSGKQ GHAIAAALAELGAEVTLVSGPVTIADPAGVATVHVERAEEMRDAVISRLPVDIAVMVA AVADWRVAGSSEQKIKKQPGDAPPALQLMENPDILKTVGHHEKRPKLVVGFAAETQDV EKNGRAKLERKGADYIVANDVSAETGIMGGDRNNVKIISNEGIEAWPDMDKAEVAKRL AALIAEKLA" misc_feature 305132..306331 /gene="dfp" /locus_tag="AGROH133_03473" /note="bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated; Region: PRK05579" /db_xref="CDD:180143" misc_feature 305144..305677 /gene="dfp" /locus_tag="AGROH133_03473" /note="Flavoprotein; Region: Flavoprotein; cl08021" /db_xref="CDD:195652" misc_feature 305699..306286 /gene="dfp" /locus_tag="AGROH133_03473" /note="DNA / pantothenate metabolism flavoprotein; Region: DFP; cl04410" /db_xref="CDD:186628" gene 306334..306693 /locus_tag="AGROH133_03474" /db_xref="GeneID:10266062" CDS 306334..306693 /locus_tag="AGROH133_03474" /note="Protein of unknown function DUF419; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277615.1" /db_xref="GI:325291751" /db_xref="GeneID:10266062" /translation="MSLFDRKTFDRLLGEWPGVRFVDQWDSHVAKVGDKVFSVLGERD DWRLVVKCSEESFEILTSLEGIHQAPYFAKRKWISISDHSPLEQEELEHYVRRSYELV AAGLTKKLRVELGILPA" misc_feature 306343..306681 /locus_tag="AGROH133_03474" /note="Protein of unknown function (DUF419); Region: DUF419; cl09948" /db_xref="CDD:186881" gene complement(306717..307631) /locus_tag="AGROH133_03475" /db_xref="GeneID:10266063" CDS complement(306717..307631) /locus_tag="AGROH133_03475" /EC_number="1.3.3.-" /codon_start=1 /transl_table=11 /product="Sterol desaturase" /protein_id="YP_004277616.1" /db_xref="GI:325291752" /db_xref="GeneID:10266063" /translation="MAKNEAVKRVLTYCSWPMVFFLGLTGAYFAFSSEHPITTFLAVY AGAVASLFLLERYIPYETEWLQSDGETVNNIAHTLLTKGLVQLAATAAVLFPMLTAIF LQPLAAMKFDLWPSQLPMVVQVTLALMIAEFGLYWAHRIAHETVFFWRFHALHHSVVR LWVVNTGRFHVADSLFKIALSQIPLYLMGAPLQVFWWLAAVTAFIGILTHCNVDMKTG PLDYVFSTPRLHRWHHSKELPEGNTNYGENLVIFDQLFGSYFNPDRPSSTNIGIKGEI AKGFLPQLFQPFTKEGVRQIIGRNTKEN" misc_feature complement(306744..307601) /locus_tag="AGROH133_03475" /note="Fatty acid hydroxylase superfamily; Region: FA_hydroxylase; cl01132" /db_xref="CDD:194046" gene complement(307795..309369) /gene="aarF" /locus_tag="AGROH133_03482" /db_xref="GeneID:10266064" CDS complement(307795..309369) /gene="aarF" /locus_tag="AGROH133_03482" /note="2-polyprenylphenol 6-hydroxylase; Predicted unusual protein kinase" /codon_start=1 /transl_table=11 /product="ubiquinone biosynthesis protein" /protein_id="YP_004277617.1" /db_xref="GI:325291753" /db_xref="GeneID:10266064" /translation="MSTLGAYFRLARVGWVLVREGVVLALPSDDLPASAQVMKALLKP FARSKAKRAQRSDRLAVAVERLGPSYVKMGQFLATRPDVVGADFADDLASLQDRMAFF PAAAAKANIEGSLGRSVSELYREFGDPIAAASIAQVHPAIVDTPKGPRKVAVKVIRPG VRQRFQNDLEAMYLIADLQQRFVRSARRLRPVEVTRTLEQTTKIEMDLRLEAAALSEL AENTKEDPGFRVPEVDWERTGRDVVTMEWIDGVKMSDIEGLKAAGHDLNKLADTLIQS FLRHTLRDGFFHADMHPGNLFVDPQGMIVAVDMGIAGRLGKKERRFLAEILYGFITRD YMRVAEVHFEAGYVPGHHDKASFAQAIRAIGEPIHGQPAETISMGKLLTLLFEVTELF DMETRPELVMLQKTMVVVEGVSRMLNPRFNMWKAADPVVSGWIRDNLGPKRIVTDLKD GVKAALKLAEAAPEIAAKTEKLHSDLVYMSENGLRFDAQTAEAIGKAEARHTRWGRAA LWVIALTLLYIAIRIS" misc_feature complement(308035..309351) /gene="aarF" /locus_tag="AGROH133_03482" /note="2-polyprenylphenol 6-hydroxylase; Region: UbiB; TIGR01982" /db_xref="CDD:162638" misc_feature complement(308668..309030) /gene="aarF" /locus_tag="AGROH133_03482" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" misc_feature complement(308446..>308691) /gene="aarF" /locus_tag="AGROH133_03482" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl09925" /db_xref="CDD:195926" misc_feature complement(order(308446..308451,308479..308481, 308485..308487,308614..308616,308626..308637, 308677..308679)) /gene="aarF" /locus_tag="AGROH133_03482" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88273" gene complement(309406..310182) /gene="ubiE" /locus_tag="AGROH133_03483" /db_xref="GeneID:10266065" CDS complement(309406..310182) /gene="ubiE" /locus_tag="AGROH133_03483" /note="Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; methylase involved in ubiquinone/menaquinone biosynthesis" /codon_start=1 /transl_table=11 /product="ubiquinone/menaquinone biosynthesis methyltransferase" /protein_id="YP_004277618.1" /db_xref="GI:325291754" /db_xref="GeneID:10266065" /translation="MTDARTTAQGGMETSYGFHKVDEGKKQGLVNDVFHKVAKRYDIM NDVMSAGLHRLWKDAMVSSLSPRKDASYKVLDVAGGTGDIAFRIVEASNRLAHATVLD INGSMLAVGEERAAKRKLSDNLTFVEANAEELPFEANTFDAYTVAFGIRNVPRIDVAL KEAYRVLKRGGRLLVLEFSEVEMPLLDRVYDAWSFNAIPQFGKMITGDAEPYQYLVES IRKFPNQEDFATMIRSAGFSRVTYTNYTGGIAALHSGWKL" misc_feature complement(309412..310107) /gene="ubiE" /locus_tag="AGROH133_03483" /note="ubiE/COQ5 methyltransferase family; Region: Ubie_methyltran; pfam01209" /db_xref="CDD:110227" misc_feature complement(309691..309966) /gene="ubiE" /locus_tag="AGROH133_03483" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(309745..309747,309790..309798, 309874..309879,309934..309954)) /gene="ubiE" /locus_tag="AGROH133_03483" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 310293..311228 /gene="mutM" /locus_tag="AGROH133_03484" /db_xref="GeneID:10266066" CDS 310293..311228 /gene="mutM" /locus_tag="AGROH133_03484" /EC_number="3.2.2.23" /note="Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases" /codon_start=1 /transl_table=11 /product="Formamidopyrimidine-DNA glycosylase" /protein_id="YP_004277619.1" /db_xref="GI:325291755" /db_xref="GeneID:10266066" /translation="MVLTINCRISQMPELPEVETVRRGLAPTMEGARIRKLHLGRPDL RFPFPEDFAGLIEGRTIISLGRRAKYLLIELEDGLTIVAHLGMSGSFRIEAAADEAGN RNAPGAFHYARSKDGKHDHVVFHLDKGEERICVIYNDPRRFGFMHLVERNKLDLYPAF AELGPEPTGNALSADYLASRFQGKSQPLKSTLLDQKVIAGLGNIYVCEALWRAHLSPL RAAGTLVTKTGEPKPELINLTEKIRDVIADAIAAGGSSLRDHIQTDGTLGYFQHSFSV YDQEGQPCRTPGCGGTVERIVQAGRSTFYCAACQK" misc_feature 310326..311225 /gene="mutM" /locus_tag="AGROH133_03484" /note="formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated; Region: PRK01103" /db_xref="CDD:179222" misc_feature 310329..310742 /gene="mutM" /locus_tag="AGROH133_03484" /note="N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases; Region: EcFpg-like_N; cd08966" /db_xref="CDD:176800" misc_feature order(310329..310334,310497..310499,310542..310544, 310548..310556,310644..310649,310710..310721) /gene="mutM" /locus_tag="AGROH133_03484" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176800" misc_feature 310329..310331 /gene="mutM" /locus_tag="AGROH133_03484" /note="catalytic residue [active]" /db_xref="CDD:176800" misc_feature order(310332..310343,310347..310352,310359..310361, 310488..310499,310554..310556) /gene="mutM" /locus_tag="AGROH133_03484" /note="H2TH interface [polypeptide binding]; other site" /db_xref="CDD:176800" misc_feature order(310332..310334,310497..310499) /gene="mutM" /locus_tag="AGROH133_03484" /note="putative catalytic residues [active]" /db_xref="CDD:176800" misc_feature 310542..310544 /gene="mutM" /locus_tag="AGROH133_03484" /note="turnover-facilitating residue; other site" /db_xref="CDD:176800" misc_feature order(310551..310553,310713..310715,310719..310721) /gene="mutM" /locus_tag="AGROH133_03484" /note="intercalation triad [nucleotide binding]; other site" /db_xref="CDD:176800" misc_feature 310554..310556 /gene="mutM" /locus_tag="AGROH133_03484" /note="8OG recognition residue [nucleotide binding]; other site" /db_xref="CDD:176800" misc_feature order(310647..310649,310716..310718) /gene="mutM" /locus_tag="AGROH133_03484" /note="putative reading head residues; other site" /db_xref="CDD:176800" misc_feature 310779..311069 /gene="mutM" /locus_tag="AGROH133_03484" /note="Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831" /db_xref="CDD:115485" misc_feature 311133..311225 /gene="mutM" /locus_tag="AGROH133_03484" /note="Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827" /db_xref="CDD:148438" gene 311260..312033 /gene="fadB" /locus_tag="AGROH133_03485" /db_xref="GeneID:10266067" CDS 311260..312033 /gene="fadB" /locus_tag="AGROH133_03485" /EC_number="4.2.1.17" /note="Enoyl-CoA hydratase/isomerase family; Enoyl-CoA hydratase/carnithine racemase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase" /protein_id="YP_004277620.1" /db_xref="GI:325291756" /db_xref="GeneID:10266067" /translation="MDYETILVEKRDEVGVITLNRPKALNALNSVLLKELRHILSSFS ADDSIGAIIITGSEKAFAAGADIKEMQGLDFVDAYVGDFLGGWDEVASTRKPVIAAVS GFALGGGCELAMMCDFIIASDTAKFGQPEITLGVIPGMGGSQRLTRAVGKAKAMDLVL TGRMMDAAEAERAGLVSRIVPAANLMDEAVDAATRIASLSRASVLMAKESVNRSFEVP LSEGLRYERRSFQSLFATADQKEGMAAFVEKRKPAFRNR" misc_feature 311260..312030 /gene="fadB" /locus_tag="AGROH133_03485" /note="enoyl-CoA hydratase; Provisional; Region: PRK05862" /db_xref="CDD:180295" misc_feature 311275..311847 /gene="fadB" /locus_tag="AGROH133_03485" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(311332..311334,311338..311340,311434..311436, 311446..311460,311569..311571,311575..311583, 311647..311652,311659..311661) /gene="fadB" /locus_tag="AGROH133_03485" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(311452..311454,311581..311583) /gene="fadB" /locus_tag="AGROH133_03485" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(311533..311535,311545..311547,311608..311619, 311653..311664,311680..311682,311686..311694, 311698..311703,311716..311721,311725..311730, 311734..311739,311746..311748,311779..311781, 311788..311790,311833..311835,311842..311847) /gene="fadB" /locus_tag="AGROH133_03485" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 312228..312494 /gene="rpsT" /locus_tag="AGROH133_03486" /db_xref="GeneID:10266068" CDS 312228..312494 /gene="rpsT" /locus_tag="AGROH133_03486" /note="binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; Ribosomal protein S20" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S20" /protein_id="YP_004277621.1" /db_xref="GI:325291757" /db_xref="GeneID:10266068" /translation="MANTTSAKKATRKIARRTAVNKARRSRVRGFIRKVEEAIASGDL AVATEALKAAQPEIQRAATRGVLHGNTASRKVSRLAQRVKALSA" misc_feature 312228..312491 /gene="rpsT" /locus_tag="AGROH133_03486" /note="Ribosomal protein S20; Region: Ribosomal_S20p; cl00384" /db_xref="CDD:193796" gene 313366..314829 /gene="dnaA" /locus_tag="AGROH133_03487" /db_xref="GeneID:10266069" CDS 313366..314829 /gene="dnaA" /locus_tag="AGROH133_03487" /note="binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself; ATPase involved in DNA replication initiation" /codon_start=1 /transl_table=11 /product="chromosomal replication initiation protein" /protein_id="YP_004277622.1" /db_xref="GI:325291758" /db_xref="GeneID:10266069" /translation="MKHDALFERFSARLKAQVGPEVYASWFARLKLHTVSKSVVRFTV PTTFLKSWINNRYMDLITSLVQSEDPDVLKVEILVRSASRPARPAQVEERVQPVQDMG AVARNKSFIPSQPATAPSAQPAAAQATLRQGSSGPLFGSPLDTRFTFDTFVEGSSNRV ALAAAKTIAEAGAGAVRFNPLFIHAGVGLGKTHLLQAIANAAIDSPRNPRVVYLTAEY FMWRFATAIRDNDALTLKDTLRNIDLLVIDDMQFLQGKMIQHEFCHLLNMLLDSAKQV VVAADRAPWELESLDPRVRSRLQGGMAIEIEGPDYDMRYEMLNRRMGSARQDDPSFEI SDEILTHVAKSVTASGRELEGAFNQLMFRRSFEPNLSVDRVDELLSHLVGSGEAKRVR IEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLAKMLTPRSFPEIGRRFGGRD HTTVLHAVRKIEDLISGDTKLGHEVELLKRLINENNA" misc_feature 313372..314817 /gene="dnaA" /locus_tag="AGROH133_03487" /note="chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149" /db_xref="CDD:178902" misc_feature 313894..314262 /gene="dnaA" /locus_tag="AGROH133_03487" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 313918..313941 /gene="dnaA" /locus_tag="AGROH133_03487" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(313921..313944,314107..314109,314212..314214) /gene="dnaA" /locus_tag="AGROH133_03487" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 314095..314112 /gene="dnaA" /locus_tag="AGROH133_03487" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 314254..314256 /gene="dnaA" /locus_tag="AGROH133_03487" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 314542..314811 /gene="dnaA" /locus_tag="AGROH133_03487" /note="C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571" /db_xref="CDD:119330" misc_feature order(314611..314613,314635..314640,314659..314661, 314677..314685,314710..314724,314731..314733, 314740..314745) /gene="dnaA" /locus_tag="AGROH133_03487" /note="DnaA box-binding interface [nucleotide binding]; other site" /db_xref="CDD:119330" gene complement(314904..316103) /gene="hemN" /locus_tag="AGROH133_03488" /db_xref="GeneID:10266070" CDS complement(314904..316103) /gene="hemN" /locus_tag="AGROH133_03488" /EC_number="1.3.99.22" /note="catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases" /codon_start=1 /transl_table=11 /product="oxygen-independent coproporphyrinogen III oxidase" /protein_id="YP_004277623.1" /db_xref="GI:325291759" /db_xref="GeneID:10266070" /translation="MTGEHQLSAPGASLLPDTGDPGFGIYLHWPFCAAKCPYCDFNSH VRHRPVDQERFTAAFLSEMAKMRALSGPRVVTSIFMGGGTPSLMDPQTVGALLDGVSR FWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVSLGVQALNDRDLKFLGRLHDVAD ALKAIRLAREIFPRMSFDLIYARPNQTVAEWDAELKEAVSYAVDHLSLYQLTIEEGTP FYGLHKAGKLIVPDGEHSAVLYEATQEITERYGMPAYEVSNHARPGAESRHNLTYWRY GDYAGIGPGAHGRLTNGASKLATVTERHPETWLETVEREGHGMVDQELLGVDEQADEL LLMGLRLREGIDLARWSDLSGRELDPEKEEFLLQHGFVERIGNSRLRCTPSGMLILDA VVADLAC" misc_feature complement(314907..316049) /gene="hemN" /locus_tag="AGROH133_03488" /note="coproporphyrinogen III oxidase; Provisional; Region: PRK09057" /db_xref="CDD:181629" misc_feature complement(315432..316010) /gene="hemN" /locus_tag="AGROH133_03488" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(315471..315476,315564..315566, 315684..315686,315753..315761,315852..315857, 315861..315863,315984..315992,315996..315998, 316002..316004,316008..316010)) /gene="hemN" /locus_tag="AGROH133_03488" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature complement(314940..315293) /gene="hemN" /locus_tag="AGROH133_03488" /note="HemN C-terminal region; Region: HemN_C; pfam06969" /db_xref="CDD:191656" gene complement(316109..316753) /gene="ham1" /locus_tag="AGROH133_03489" /db_xref="GeneID:10266071" CDS complement(316109..316753) /gene="ham1" /locus_tag="AGROH133_03489" /EC_number="3.6.1.15" /note="HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; Xanthosine triphosphate pyrophosphatase" /codon_start=1 /transl_table=11 /product="deoxyribonucleotide triphosphate pyrophosphatase" /protein_id="YP_004277624.1" /db_xref="GI:325291760" /db_xref="GeneID:10266071" /translation="MRKLDTRTIVVASHNKGKIAEIADLIGPFGFSAKSAAELNFVEP DETGTTFEENAAIKALASAKASGLPALSDDSGLVIDALDGAPGVYTANWAETADGTRD FAMAMQKVEDALAERGATKPEDRTGRFVSVLCLAWPDGHVEYFRGEVEGTVAWPPRGT SGFGYDPIFKPEGYDTTFGEMTADEKHGWKHGDAFALSHRARAFKKFVETCLEA" misc_feature complement(316127..316729) /gene="ham1" /locus_tag="AGROH133_03489" /note="NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-...; Region: HAM1; cd00515" /db_xref="CDD:29953" misc_feature complement(order(316154..316159,316256..316261, 316265..316267,316367..316369,316481..316486, 316523..316531,316691..316693,316700..316705, 316709..316711)) /gene="ham1" /locus_tag="AGROH133_03489" /note="active site" /db_xref="CDD:29953" misc_feature complement(order(316478..316480,316487..316489, 316496..316498,316505..316510,316610..316618)) /gene="ham1" /locus_tag="AGROH133_03489" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29953" gene complement(316771..317487) /gene="rph" /locus_tag="AGROH133_03490" /db_xref="GeneID:10266072" CDS complement(316771..317487) /gene="rph" /locus_tag="AGROH133_03490" /EC_number="2.7.7.56" /note="RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; RNase PH" /codon_start=1 /transl_table=11 /product="ribonuclease PH" /protein_id="YP_004277625.1" /db_xref="GI:325291761" /db_xref="GeneID:10266072" /translation="MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLE EKTPPWLRNSGKGWVTAEYGMLPRSTHERMKREASAGKQGGRTQEIQRLIGRSLRAVV DLQALGERQISIDCDVIQADGGTRTASITGAWIALHDCLKWMETRNMIKVEKVLKDHI AAISCGIFAKQPVIDLDYLEDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTL LGLAKAGCSELVALQKQAIA" misc_feature complement(316774..317487) /gene="rph" /locus_tag="AGROH133_03490" /note="ribonuclease PH; Reviewed; Region: rph; PRK00173" /db_xref="CDD:178914" misc_feature complement(317071..317460) /gene="rph" /locus_tag="AGROH133_03490" /note="3' exoribonuclease family, domain 1; Region: RNase_PH; pfam01138" /db_xref="CDD:189854" misc_feature complement(316813..317016) /gene="rph" /locus_tag="AGROH133_03490" /note="3' exoribonuclease family, domain 2; Region: RNase_PH_C; pfam03725" /db_xref="CDD:190728" gene 317624..318715 /gene="hrcA" /locus_tag="AGROH133_03491" /db_xref="GeneID:10266073" CDS 317624..318715 /gene="hrcA" /locus_tag="AGROH133_03491" /note="Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; Transcriptional regulator of heat shock gene" /codon_start=1 /transl_table=11 /product="heat-inducible transcription repressor" /protein_id="YP_004277626.1" /db_xref="GI:325291762" /db_xref="GeneID:10266073" /translation="MGFSAPLSKDQASLLDERSREIFRRIVEGYLDTGEPLGSRSLSR LLPMSLSPASVRNVMSDLEELGLIYSPHISAGRLPTQTGLRFFVDAFMQVGDLPADER ASIDRQIGPVAGHEQSLEGLLTEASRMLSGMSRGAGLVLTAKSDVILKHVEFIRLEPT KALAVLVGDHNQVENRIIELPVGISSSQLTEAANFINAHLSGQTLQELRGQFQTQRAE LQSELGTLAQDLIERGLAIWAGDNEEGKLGRLIVRGRSNLLEGLAGEEDIDRVRLLFD DLERKENLIEILNLAESGSGVRIFIGSENKLFSLSGSSLIVAPYRDEENRVVGAVGVI GPTRLNYARIVPMVDYTAQIMARLSRKQR" misc_feature 317666..318697 /gene="hrcA" /locus_tag="AGROH133_03491" /note="heat-inducible transcription repressor; Provisional; Region: hrcA; PRK00082" /db_xref="CDD:178849" misc_feature 317978..318658 /gene="hrcA" /locus_tag="AGROH133_03491" /note="HrcA protein C terminal domain; Region: HrcA; pfam01628" /db_xref="CDD:145001" gene 318829..319464 /gene="grpE" /locus_tag="AGROH133_03492" /db_xref="GeneID:10266074" CDS 318829..319464 /gene="grpE" /locus_tag="AGROH133_03492" /note="GrpE nucleotide exchange factor; Molecular chaperone GrpE (heat shock protein)" /codon_start=1 /transl_table=11 /product="GRPE protein" /protein_id="YP_004277627.1" /db_xref="GI:325291763" /db_xref="GeneID:10266074" /translation="MTDDTKKPGPDADVAEEFVEPAFTGEETAEAAEPDPIELLRAEN ADLRDKFLRLAAEMDNLRRRTEREVKDAKAYSLAAFARDMLAVSDNLRRALEAIPDEL KTNGEAGLNGLIEGVEMTERSMLSTLERHGVKKIDAEGQKFDPNFHQAMFEIPNTAVP NNTVLQVVQAGFTIGDRVLRPAMVGVSKGGPKVETAAAPEPGTASVNEKDA" misc_feature 318958..319386 /gene="grpE" /locus_tag="AGROH133_03492" /note="GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding...; Region: GrpE; cd00446" /db_xref="CDD:73207" misc_feature order(318964..318969,318976..318981,318988..318990, 319000..319002,319009..319014,319054..319056, 319066..319068,319075..319077,319096..319098, 319108..319110,319177..319179,319186..319188, 319219..319221) /gene="grpE" /locus_tag="AGROH133_03492" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73207" misc_feature order(319015..319017,319261..319263,319270..319284, 319330..319332,319357..319359,319369..319371) /gene="grpE" /locus_tag="AGROH133_03492" /note="hsp70 (ATPase domain) interactions [polypeptide binding]; other site" /db_xref="CDD:73207" gene complement(319595..320056) /gene="ptsN" /locus_tag="AGROH133_03493" /db_xref="GeneID:10266075" CDS complement(319595..320056) /gene="ptsN" /locus_tag="AGROH133_03493" /EC_number="2.7.1.69" /note="Phosphotransferase system mannitol/fructose- specific IIA domain (Ntr-type)" /codon_start=1 /transl_table=11 /product="nitrogen regulatory IIA protein" /protein_id="YP_004277628.1" /db_xref="GI:325291764" /db_xref="GeneID:10266075" /translation="MALADLLQQDAIIPALKVNSKKQLLQELAAKAARITGVSEREVF DVILQREKLGSTGVGHGIAIPHGKLSSIHQITGVFARLETPVDFEALDDQPVDLVFLL LAPEGAGADHLKALSRIARALRDPELVAKLRATDSDTAIYAFLNQEQATAA" misc_feature complement(319622..>319948) /gene="ptsN" /locus_tag="AGROH133_03493" /note="PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211" /db_xref="CDD:29266" misc_feature complement(order(319859..319861,319907..319909)) /gene="ptsN" /locus_tag="AGROH133_03493" /note="active site" /db_xref="CDD:29266" misc_feature complement(319859..319861) /gene="ptsN" /locus_tag="AGROH133_03493" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29266" gene complement(320139..320720) /locus_tag="AGROH133_03494" /db_xref="GeneID:10266076" CDS complement(320139..320720) /locus_tag="AGROH133_03494" /note="Sigma 54 modulation protein / S30EA ribosomal protein; Ribosome-associated protein Y (PSrp-1)" /codon_start=1 /transl_table=11 /product="sigma-54 modulation protein" /protein_id="YP_004277629.1" /db_xref="GI:325291765" /db_xref="GeneID:10266076" /translation="MSVRVSGKHMEIGESFRQRIEDNIGLAVTKYFDGGYSGQVTVEK SGSRFAADCKLHLDTGVVLHAAGQANDPQASFDAAAERIEKRLRRYKRKLKDHHHNGS AANGAMSEIAYTVMDAVPDEDHEVPEDYAPTIVAESSKQIKTMSVASAVMALDMTDEP VLLFRSPGKEYLNIVYRRHDGNIGWIDAETIKS" misc_feature complement(320469..320714) /locus_tag="AGROH133_03494" /note="RaiA ('ribosome-associated inhibitor A', also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site...; Region: RaiA; cd00552" /db_xref="CDD:29642" misc_feature complement(order(320499..320501,320508..320510, 320514..320516,320523..320525,320529..320531, 320538..320543,320547..320552,320559..320561, 320586..320588,320598..320600,320610..320615, 320631..320633,320640..320642,320697..320699, 320703..320705,320709..320711)) /locus_tag="AGROH133_03494" /note="30S subunit binding site; other site" /db_xref="CDD:29642" gene 320911..321003 /locus_tag="AGROH133_03495" /db_xref="GeneID:10266077" CDS 320911..321003 /locus_tag="AGROH133_03495" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277630.1" /db_xref="GI:325291766" /db_xref="GeneID:10266077" /translation="MVRLESPENVTSATAQNADSLARAFFSRRL" gene complement(320955..322505) /gene="rpoN" /locus_tag="AGROH133_03496" /db_xref="GeneID:10266078" CDS complement(320955..322505) /gene="rpoN" /locus_tag="AGROH133_03496" /EC_number="2.7.7.6" /note="sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-54" /protein_id="YP_004277631.1" /db_xref="GI:325291767" /db_xref="GeneID:10266078" /translation="MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVE RNPLLEIAANDGDLSNDTPADAENFGDADSEGPDKSAPVTADSDDWYGDRAANLGEQL DTSFENVFPDDTEPRKPDAPELAGQWKSMPGQESGESYDLDDFVAAKQTLSDHLNQQL PLAISSVEDRMIADALIGQLDETGYIAVDAVEDVAERLGAAPSAVERILETLQGFDPP GVFSRSLGECLAIQLAQKDRLDPAMRAFIDNLELLAKRDFASLKKLCGVDEEDLLDML AEIRTLNPRPGAGYDSTVSETIVPDIIIRPSSAGGWLVEINPETLPRVLINQTYFAEV SRHKSREGEDQDFLSECMQTAHWLTRSLDQRARTIMKVATEIVRQQDAFLVNGVDHLR PLNLKTVADAIKMHESTVSRVTSKKYMLTPRGLFELKYFFSVSISSVEGGDSHSAEAV RHRIKAMIAQEAADAVLSDDDIVDNLKKSGIDLARRTVAKYREAMNIPSSVQRRREKK ALARLSAF" misc_feature complement(320988..322499) /gene="rpoN" /locus_tag="AGROH133_03496" /note="RNA polymerase factor sigma-54; Reviewed; Region: PRK05932" /db_xref="CDD:180314" misc_feature complement(322350..322490) /gene="rpoN" /locus_tag="AGROH133_03496" /note="Sigma-54 factor, Activator interacting domain (AID); Region: Sigma54_AID; pfam00309" /db_xref="CDD:189497" misc_feature complement(321513..322100) /gene="rpoN" /locus_tag="AGROH133_03496" /note="Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963" /db_xref="CDD:147239" misc_feature complement(320991..321473) /gene="rpoN" /locus_tag="AGROH133_03496" /note="Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552" /db_xref="CDD:113327" gene complement(322659..323468) /locus_tag="AGROH133_03498" /db_xref="GeneID:10266079" CDS complement(322659..323468) /locus_tag="AGROH133_03498" /note="ABC transporter nucleotide-binding protein/ATPase; ABC-type (unclassified) transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277632.1" /db_xref="GI:325291768" /db_xref="GeneID:10266079" /translation="MKIASISKIFGGGRDRPVDAASQADKARYDGTLIAHGLTKTYNT RRVVNGVSLVVRRGEAVGLLGPNGAGKTTCFYMITGLVPVDSGKIAINGNDVTTMPMY RRARLGVGYLPQEASIFRGLTVEENIRAVLEVHEPDSAKRSRKLDELLEEFHIAQLRK SPAVALSGGERRRLEIARALATDPTFMLLDEPFAGVDPISVSDIQNLVRHLTARGIGV LITDHNVRETLGLIDRAYIIHAGEVLTHGRADDIVNNPDVRRLYLGNNFSL" misc_feature complement(322662..323381) /locus_tag="AGROH133_03498" /note="ABC-type (unclassified) transport system, ATPase component [General function prediction only]; Region: YhbG; COG1137" /db_xref="CDD:31332" misc_feature complement(322677..323372) /locus_tag="AGROH133_03498" /note="The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in...; Region: ABC_YhbG; cd03218" /db_xref="CDD:72977" misc_feature complement(323253..323276) /locus_tag="AGROH133_03498" /note="Walker A/P-loop; other site" /db_xref="CDD:72977" misc_feature complement(order(322800..322802,322896..322901, 323127..323129,323250..323258,323262..323267)) /locus_tag="AGROH133_03498" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72977" misc_feature complement(323127..323138) /locus_tag="AGROH133_03498" /note="Q-loop/lid; other site" /db_xref="CDD:72977" misc_feature complement(322944..322973) /locus_tag="AGROH133_03498" /note="ABC transporter signature motif; other site" /db_xref="CDD:72977" misc_feature complement(322896..322913) /locus_tag="AGROH133_03498" /note="Walker B; other site" /db_xref="CDD:72977" misc_feature complement(322878..322889) /locus_tag="AGROH133_03498" /note="D-loop; other site" /db_xref="CDD:72977" misc_feature complement(322794..322814) /locus_tag="AGROH133_03498" /note="H-loop/switch region; other site" /db_xref="CDD:72977" gene complement(323478..324134) /locus_tag="AGROH133_03499" /db_xref="GeneID:10266080" CDS complement(323478..324134) /locus_tag="AGROH133_03499" /note="OstA-like protein; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277633.1" /db_xref="GI:325291769" /db_xref="GeneID:10266080" /translation="MARLLHFRGRYAHVSLHPISRMKASESPVQMMQISRPVSLGKSA GVTAAAFAFSCLATVAFAQNTTSNMTGVKLSGDQPIAIESDQLEIRDQERKAYFTGNV KVVQGTTTLQAGKMTVNYKGEGSSLTSGDANIEKIFVDNNVYLTSETQKATADHGEFD MAAQTFILTGKQVVLSEGANVFTGCKLTVLMNSGQAKLESCGGPVRIMLDPKSQQKKQ " misc_feature complement(323481..323981) /locus_tag="AGROH133_03499" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1934" /db_xref="CDD:32117" misc_feature complement(323553..323891) /locus_tag="AGROH133_03499" /note="OstA-like protein; Region: OstA; cl00844" /db_xref="CDD:193952" gene complement(324058..324723) /locus_tag="AGROH133_03501" /db_xref="GeneID:10266081" CDS complement(324058..324723) /locus_tag="AGROH133_03501" /note="Protein of unknown function DUF1239; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277634.1" /db_xref="GI:325291770" /db_xref="GeneID:10266081" /translation="MLERLRQPAPAFPLPNDQNGAYERALRHSARVKRLKIILPLGAA IISFAFVAVSLIRTWAPEEVSLESARIEDGKIVMEKPAVAGRNEKGIDYSMNADRALQ DIANPNLMTLERVLAAVPVNDSVAQVIAKEGIFDRATNTLKMTAPFDINLSNGIQAKF QSADVDLKAGKMSSKEPVSIKTNDGAIVAQSIDIADNGKTITFSGQVRARIAASNIKN EGK" misc_feature complement(324076..324723) /locus_tag="AGROH133_03501" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5375" /db_xref="CDD:34939" gene 324973..325926 /gene="sppA" /locus_tag="AGROH133_03503" /db_xref="GeneID:10266082" CDS 324973..325926 /gene="sppA" /locus_tag="AGROH133_03503" /EC_number="3.4.21.-" /note="proteinase IV; Periplasmic serine proteases (ClpP class)" /codon_start=1 /transl_table=11 /product="protease IV" /protein_id="YP_004277635.1" /db_xref="GI:325291771" /db_xref="GeneID:10266082" /translation="MDNMAIADRRRLRRKLTFWRIAAVFLFVAGIFGLYRFLWATPQQ SERPHIARVQISGLIQDNTELLERLDKIAKSDNVKGLIVSISSPGGTTYGGERIFKAI RGVAEKKPVVSDVRTLAASAGYMIASAGDVIVAGETSITGSIGVIFQYPQIGQLMDKL GVSLQEIKSSPMKAEPSPFHEAPEEAKTMIRSMVMDSYGWFVDLVADRRKLPREDVLK LADGSIFTGRQALANKLVDTLGGEKEIRGYFETRGVAKDLPIVEWRAPSSSSPFSLFS VAQIAKLLGYDDLIPFAGSGQLGADKLFLDGLVSVWQVEPH" misc_feature 325117..325704 /gene="sppA" /locus_tag="AGROH133_03503" /note="Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023" /db_xref="CDD:132934" misc_feature order(325138..325140,325222..325224,325333..325335, 325378..325380,325384..325386,325408..325419, 325564..325566,325636..325644,325648..325650, 325657..325659) /gene="sppA" /locus_tag="AGROH133_03503" /note="tandem repeat interface [polypeptide binding]; other site" /db_xref="CDD:132934" misc_feature order(325159..325161,325180..325182,325258..325260, 325453..325455,325459..325473,325558..325560, 325570..325572) /gene="sppA" /locus_tag="AGROH133_03503" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132934" misc_feature 325333..325335 /gene="sppA" /locus_tag="AGROH133_03503" /note="active site residues [active]" /db_xref="CDD:132934" gene 325953..326255 /gene="ihfB" /locus_tag="AGROH133_03505" /db_xref="GeneID:10266083" CDS 325953..326255 /gene="ihfB" /locus_tag="AGROH133_03505" /note="This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Bacterial nucleoid DNA-binding protein" /codon_start=1 /transl_table=11 /product="integration host factor subunit beta" /protein_id="YP_004277636.1" /db_xref="GI:325291772" /db_xref="GeneID:10266083" /translation="MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVE LRGFGAFSVKNRPSRSGRNPRTGESVFVEEKWVPFFKTGKELRERLNPGMGDEEDD" misc_feature 325959..326219 /gene="ihfB" /locus_tag="AGROH133_03505" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature order(325959..325961,325968..325970,325977..325979, 325989..325991,326034..326036,326043..326048, 326055..326060,326070..326084,326091..326096, 326109..326111,326175..326180,326190..326192, 326196..326198,326217..326219) /gene="ihfB" /locus_tag="AGROH133_03505" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" misc_feature order(325959..325964,326031..326033,326076..326078, 326082..326084,326088..326093,326100..326102, 326112..326114,326118..326123,326127..326129, 326136..326147,326175..326177,326187..326189, 326193..326195,326202..326204) /gene="ihfB" /locus_tag="AGROH133_03505" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" gene 326321..326662 /locus_tag="AGROH133_03506" /db_xref="GeneID:10266084" CDS 326321..326662 /locus_tag="AGROH133_03506" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277637.1" /db_xref="GI:325291773" /db_xref="GeneID:10266084" /translation="MSKKIINLIILLPLAIILVILCVANRQSVTLALNPFRPEDGVLS FTAPFFVFLFLAVIFGVLLGSSATWFAQGKHRKRARIEAKEAVRWHDEANRHKAATAA QLPNAGQLPAK" gene 326756..327889 /locus_tag="AGROH133_03510" /db_xref="GeneID:10266085" CDS 326756..327889 /locus_tag="AGROH133_03510" /note="Predicted SAM-dependent methyltransferases" /codon_start=1 /transl_table=11 /product="SAM dependent methyltransferase" /protein_id="YP_004277638.1" /db_xref="GI:325291774" /db_xref="GeneID:10266085" /translation="MKKKDSRPGNRVRAGSEKKQVHAAKPARRTDAAPKKREPDAVRS APKPAPREKIAPVPAVEQVPARPLKHRTGERPAEQVPVILESSGAGDFHLIDSGNGLK LEQYGEYRVVRPEAQALWQPSVPDRVWQNADAIFTGDTDEDGMGRWRFPKAALGETWP LSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVA AAAGAEVTHVDASKKAIGWAKENQALAGLEQAPIRWICEDAMKFIQREERRGSTYDII LTDPPKFGRGTHGEIWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELM REIMRGAGGVVASGELVIREAGLDGKTPGRVLSTSLFSRWEPK" misc_feature 326891..327880 /locus_tag="AGROH133_03510" /note="Predicted SAM-dependent methyltransferases [General function prediction only]; Region: COG1092" /db_xref="CDD:31289" gene 327886..328746 /gene="trmH" /locus_tag="AGROH133_03511" /db_xref="GeneID:10266086" CDS 327886..328746 /gene="trmH" /locus_tag="AGROH133_03511" /note="rRNA methylases" /codon_start=1 /transl_table=11 /product="rRNA methylase" /protein_id="YP_004277639.1" /db_xref="GI:325291775" /db_xref="GeneID:10266086" /translation="MTNDMRENTTRRVGQVKEVTSLANPIIKDIKALTQKKGREETGT FMAEGLKLVIDALELGWTISTLVYAKAAKGKPLVEQAAVKTVASGGLVLEVSEKVIAS ITRRDNPQMVVGIFDQRWKPLKDIRPEKGETYIALDRVRDPGNLGTIIRTADAAGASG VILVGDCTDPFSLETVRATMGSVFATPVARASVEEFLSWKKSANVSVVATHLAGSVDY RKIDYAGKPVVLLMGNEQSGLPPELAGRADQLARIPQQGRADSLNLAIATAVMLFEAR RHLLELAPVK" misc_feature 327940..328731 /gene="trmH" /locus_tag="AGROH133_03511" /note="rRNA methylases [Translation, ribosomal structure and biogenesis]; Region: SpoU; COG0566" /db_xref="CDD:30912" misc_feature 328027..328239 /gene="trmH" /locus_tag="AGROH133_03511" /note="RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; pfam08032" /db_xref="CDD:149230" misc_feature 328285..328704 /gene="trmH" /locus_tag="AGROH133_03511" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene 328746..329234 /gene="lspA" /locus_tag="AGROH133_03512" /db_xref="GeneID:10266087" CDS 328746..329234 /gene="lspA" /locus_tag="AGROH133_03512" /EC_number="3.4.23.36" /codon_start=1 /transl_table=11 /product="Lipoprotein signal peptidase" /protein_id="YP_004277640.1" /db_xref="GI:325291776" /db_xref="GeneID:10266087" /translation="MAKAALFSKFGPAFALIVAALVLDQVVKQLVETYLPLQEMVPVI PFLALYRTYNLGVAFSMLADMHGWFIVSMRLVIVVFVLWLWRKTAADRTFAHLGFAFI IAGAAGNLLDRFFYGHVIDYILFHTDTWSFAVFNLADTFITIGAGCVILDEFLHARAA KK" misc_feature 328746..329231 /gene="lspA" /locus_tag="AGROH133_03512" /note="Signal peptidase (SPase) II; Region: Peptidase_A8; cl00458" /db_xref="CDD:187899" misc_feature 328785..329198 /gene="lspA" /locus_tag="AGROH133_03512" /note="lipoprotein signal peptidase; Provisional; Region: PRK14787" /db_xref="CDD:173248" gene 329290..331521 /gene="barA" /locus_tag="AGROH133_03517" /db_xref="GeneID:10266088" CDS 329290..331521 /gene="barA" /locus_tag="AGROH133_03517" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase/response regulator hybrid" /protein_id="YP_004277641.1" /db_xref="GI:325291777" /db_xref="GeneID:10266088" /translation="MSELARLREKVSDGLAATPAQPADRVDTTSHHGGAGRGIDARSI TLYVAASLSVGAFSAALIALAVPYSVTVALASFFGAVLVGLLSYAMFGKSFQYTGKLS ADDLDVRLRQTQNRSLIAEIQEAMGDIIVIRNMDRRIVEANAVFREVTGCSAPEGLSC EEIGIAFRPGDKAHAYDVEIATPFGQRIFSWHDVVTRDLASSRLLISSIARDVTEERL ALGERENARLRAEKADAEKARLLATVSHEIRLPLSGMLGMNHLLSQTKLNEEQRNYLD GMKQSGQSLVQLVEDLLDYSTMEAGRFKLNPRAENLRRLIESIVEMLAHRAHEKGIEI TSFVTPDVPDYLDFDPARLRQVLFNLLGNAVKFTQVGGVVIRARMVEGELHITVEDTG PGMSQAEQARIFGEFEQAGPMSQQSGGTGLGLAISARIVREFGGSLTVFSRKGEGSTF KLAFRPGSSSTGTPDPDRHHCLQHTNVLLVAPRGVAATVTMEAIEAFGGKCALIHEPE DLERLHGTAADLTDIIVDRRISPLFRDALRDWPQQNVRRTLLVSPEERASTMHVSFDA WLIRPLREKSLIDVLCGRLRGIERRDAINDNHPDVGFSSRVTEGVSGIDILVAEDDAV NARIIRAVLEKSGYIVRGVDDFQALQQAVAPGTTRLPHLIISDLNMPGGEGLEVLPEL LGTLKGGRNIPLIVLSGDASVETAEILLNAGAAKVLTKPADPRRLVEEIRRLLEAKRL LPS" misc_feature <329953..331050 /gene="barA" /locus_tag="AGROH133_03517" /note="TMAO reductase sytem sensor TorS; Region: TMAO_torS; TIGR02956" /db_xref="CDD:163083" misc_feature 329989..330177 /gene="barA" /locus_tag="AGROH133_03517" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(330007..330009,330019..330021,330031..330033, 330040..330042,330052..330054,330061..330063, 330109..330111,330121..330123,330130..330132, 330142..330144,330151..330153,330163..330165) /gene="barA" /locus_tag="AGROH133_03517" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 330025..330027 /gene="barA" /locus_tag="AGROH133_03517" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 330346..330651 /gene="barA" /locus_tag="AGROH133_03517" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(330364..330366,330376..330378,330385..330387, 330451..330453,330457..330459,330463..330465, 330469..330474,330550..330561,330607..330609, 330613..330615,330628..330633,330637..330639) /gene="barA" /locus_tag="AGROH133_03517" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 330376..330378 /gene="barA" /locus_tag="AGROH133_03517" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(330463..330465,330469..330471,330550..330552, 330556..330558) /gene="barA" /locus_tag="AGROH133_03517" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 331135..331461 /gene="barA" /locus_tag="AGROH133_03517" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 331138..331461 /gene="barA" /locus_tag="AGROH133_03517" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(331147..331152,331288..331290,331312..331314, 331381..331383,331438..331440,331447..331452) /gene="barA" /locus_tag="AGROH133_03517" /note="active site" /db_xref="CDD:29071" misc_feature 331288..331290 /gene="barA" /locus_tag="AGROH133_03517" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(331297..331302,331306..331314) /gene="barA" /locus_tag="AGROH133_03517" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 331447..331455 /gene="barA" /locus_tag="AGROH133_03517" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 331617..332498 /locus_tag="AGROH133_03520" /db_xref="GeneID:10266089" CDS 331617..332498 /locus_tag="AGROH133_03520" /note="Putative hemolysin" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277642.1" /db_xref="GI:325291778" /db_xref="GeneID:10266089" /translation="MVAEIYSHDICENKVVIHPRPDTAQDNEGLFGRIGSLETRLARN EREIDAAQSVRYRVFVDEMKARLPADAMRRKRDIDAWDSVCDHLLVLDKAIEGDSEDQ IVGTYRLLRQETALANNGFYSASEFDIAGLVARHPGKRFMELGRSCVLPEYRTKRTVE LLWQGNWAYAVKHRMDAMIGCASFPGVQPEAHALALSFLHHNCVAKGEWAASALPELY HEMDLVPAEALNARKALNAMPPLIKGYMRLGAMFGSGAVVDHAFNTTDVLVVLPVSSI AGRYISYYGGETERING" misc_feature 331671..332495 /locus_tag="AGROH133_03520" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene 332626..335340 /gene="mutS" /locus_tag="AGROH133_03521" /db_xref="GeneID:10266090" CDS 332626..335340 /gene="mutS" /locus_tag="AGROH133_03521" /note="This protein performs the mismatch recognition step during the DNA repair process; Mismatch repair ATPase (MutS family)" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein MutS" /protein_id="YP_004277643.1" /db_xref="GI:325291779" /db_xref="GeneID:10266090" /translation="MTDVLTTASLISEESRATATPMMEQYIEIKANNPGSLLFYRMGD FYELFFDDAVEASRSLGITLTKRGQHMGQDIPMCGVPVHAADDYLQKLILRGYRVAVC EQVEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSPTESNYLMALARIRGSAEAQ FALAWIDISTGVFRLAETTLTRLLADIWRIDPRELIVADSLFHDEELRPVFDMLGRVA VPQPAILFDSATAEGRIARYFNVSTLDGFGTFSRVEMAAAAAAVAYVEKTQIAERPPL GAPERESAASTLFIDPATRANLELVKTLSGERDGSLLHALNRTVTGGGARLLAERLMS PLTDPERVNARLDAVAYLIDDVSLCDGLRDALKQVADMPRALSRLALERGGPRDLGAI RQGLASAERIAAILDQGLLPQELAAALADLKALPGGLEAMLGSMLADDLPLLKRDGGF LREGANPELDDVRALRDQSRRVIAGLQLQYAEETGIKSLKIKHNNVLGYFIEVTAGNA DVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEALTMELEAFERMVEA VVRQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFAITGGRHPVVEQAL RRQSAGPFIANNCDLSAAEGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGSFVP AEAAHIGIVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRGT ATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGDVI FLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDDLPLF QIAVRREETRKAGPSKVEEALKGFNPDEMTPREALDALYALKKELGKA" misc_feature 332659..335334 /gene="mutS" /locus_tag="AGROH133_03521" /note="DNA mismatch repair protein MutS; Provisional; Region: PRK05399" /db_xref="CDD:180056" misc_feature 332683..333033 /gene="mutS" /locus_tag="AGROH133_03521" /note="MutS domain I; Region: MutS_I; pfam01624" /db_xref="CDD:144998" misc_feature 333058..333453 /gene="mutS" /locus_tag="AGROH133_03521" /note="MutS domain II; Region: MutS_II; pfam05188" /db_xref="CDD:147397" misc_feature 333985..334260 /gene="mutS" /locus_tag="AGROH133_03521" /note="MutS family domain IV; Region: MutS_IV; pfam05190" /db_xref="CDD:147399" misc_feature 334459..335127 /gene="mutS" /locus_tag="AGROH133_03521" /note="MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal...; Region: ABC_MutS1; cd03284" /db_xref="CDD:73043" misc_feature 334588..334611 /gene="mutS" /locus_tag="AGROH133_03521" /note="Walker A/P-loop; other site" /db_xref="CDD:73043" misc_feature order(334597..334602,334606..334614,334720..334722, 334825..334830,334930..334932) /gene="mutS" /locus_tag="AGROH133_03521" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73043" misc_feature 334711..334722 /gene="mutS" /locus_tag="AGROH133_03521" /note="Q-loop/lid; other site" /db_xref="CDD:73043" misc_feature 334735..334776 /gene="mutS" /locus_tag="AGROH133_03521" /note="ABC transporter signature motif; other site" /db_xref="CDD:73043" misc_feature 334813..334830 /gene="mutS" /locus_tag="AGROH133_03521" /note="Walker B; other site" /db_xref="CDD:73043" misc_feature 334837..334848 /gene="mutS" /locus_tag="AGROH133_03521" /note="D-loop; other site" /db_xref="CDD:73043" misc_feature 334918..334938 /gene="mutS" /locus_tag="AGROH133_03521" /note="H-loop/switch region; other site" /db_xref="CDD:73043" gene 335436..338264 /gene="glnD" /locus_tag="AGROH133_03522" /db_xref="GeneID:10266091" CDS 335436..338264 /gene="glnD" /locus_tag="AGROH133_03522" /EC_number="2.7.7.59" /note="catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; UTP:GlnB (protein PII) uridylyltransferase" /codon_start=1 /transl_table=11 /product="protein PII uridylyltransferase" /protein_id="YP_004277644.1" /db_xref="GI:325291780" /db_xref="GeneID:10266091" /translation="MAIKDLDFSEILDVSALKRECDIIFKNDGKRIADVRSDLLPIFR KASTEGREKARELLKSDGSGIDCARRISWLQDRLIEILYDLACQYVYPKDAPQIAVAA VGGYGRGTLAPGSDIDLLFLLPAKNTPDMHKAVEFVLYLLWDLGFKVGHATRTVDECV RLSKSDMTIRTAILEVRAICGKKSLTDDLEKRFESEVVTGTGPEFIAAKLAERDQRHR KAGDTRYLVEPNVKEGKGGLRDLHTLFWIAKYYYHVRDTADLVKLGVLSKRELRLFEK ADDFLWAVRCQMHFITNKAEERLSFDIQREIADALGYQPRPGLSAVERFMKHYFLVAK DVGDLTRIVCAALEDRQAKDVPGLSGVLSRFAHRVRKIPGSVEFVEDRGRIALAKPDV FKNDPVNLIRLFHIADINNLELHPDALRVVTRSLSLINDGLRENEEANRLFLAILTSR RDPALTLRRMNEAGVLGKFIPEFGKIVAMMQFNMYHHYTVDEHLIRSVGVLSEVDKGT AVDAHPLANQLMPGVEEREALYVAVLLHDVAKGRQEDHSIAGARVARKLCQRFRLTGK QTEMVVWLIEQHLLMSMVAQTRDLHDRKTITDFADKVQSMERLKMLLILTVCDIRAVG PGVWNGWKGQLLRSLYYETELLLSGGFSEVSRKERAHIARQALYDALEDWGQKARRKY TKLHYEPYLLTVALEDQVRHTRFIREADKQEKALSTMVRTHSFHAITEITVLAPDHPR LLSIITGACAAAGANIADAQIFTTSDGRALDTILINREFPIDEDETRRGNNVGKLIEE VLSGRQRLPEMIATRTKSRRKKSAFTIPPSVIISNGLSNKFTVIEVECLDRPGLLADM TAVIADLSLDIHSARITTFGEKVIDTFYVTDLFGQKVTNDNRQASIATRLKAVMSEQE DELRDRMPNGIIAHPDVAALPATRTAKA" misc_feature 335436..338216 /gene="glnD" /locus_tag="AGROH133_03522" /note="PII uridylyl-transferase; Provisional; Region: PRK05092" /db_xref="CDD:179932" misc_feature 335565..336017 /gene="glnD" /locus_tag="AGROH133_03522" /note="Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401" /db_xref="CDD:143391" misc_feature order(335781..335783,335787..335789,335865..335867) /gene="glnD" /locus_tag="AGROH133_03522" /note="metal binding triad; other site" /db_xref="CDD:143391" misc_feature 336048..336467 /gene="glnD" /locus_tag="AGROH133_03522" /note="GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335" /db_xref="CDD:149407" misc_feature 336954..337253 /gene="glnD" /locus_tag="AGROH133_03522" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature 337620..337835 /gene="glnD" /locus_tag="AGROH133_03522" /note="ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141" /db_xref="CDD:195804" misc_feature 337953..338165 /gene="glnD" /locus_tag="AGROH133_03522" /note="C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains; Region: ACT_ACR-UUR-like_2; cd04899" /db_xref="CDD:153171" gene 338224..339861 /gene="mviN" /locus_tag="AGROH133_03523" /db_xref="GeneID:10266092" CDS 338224..339861 /gene="mviN" /locus_tag="AGROH133_03523" /note="Virulence factor MVIN-like; Uncharacterized membrane protein, virulence factor" /codon_start=1 /transl_table=11 /product="virulence factor MviN" /protein_id="YP_004277645.1" /db_xref="GI:325291781" /db_xref="GeneID:10266092" /translation="MWRRCRPRARQRLEIPMSLIGKFATVGTATLGSRIFGFLRETLM AAAVGTGPVADAFNAAFRFPNTFRRLFAEGAFNSAFVPLFAKEIEANGMEGARRFSEE VFGVLFTVLLALTILMELSMPFIVRTVIAPGFLEDPVKFDNTVRLATIMFPYLACMSL AAMMGGMLNSLHRYFAAAIAPVFLNIILIGVLMLAWWKHYDPLQVGYALSWGVMAAGV VQLGIVWIAVRNAGMRIGFRRPRLTKNVQRLLVLALPAAITGGITQINLLINTNIASA GEGVISSLAYADRIYQLPLGVVGIAVATVLLPELARALRGGHMVEAGSLQNRSVEFVL FLTLPAAAALLVMAEPIVRFLYERGNFAPSATVTVAQILGIYGLGLPAFVLIKAFIPG FFAREDTRTPMIFAAISVVVNVSLALTLFPRFGGPGIAIAEITAGWVNAALLFGMLLW RGHWHVDIPLLTRIPRLLLAAALMAGFVHYALTYLSFELSSASSIFVRAGTIMGLVLS AMLVYFVLAFVSGGADLGMVKRAIKKRRNKNAQTETS" misc_feature 338275..339807 /gene="mviN" /locus_tag="AGROH133_03523" /note="integral membrane protein MviN; Region: mviN; TIGR01695" /db_xref="CDD:162493" gene 339861..340265 /locus_tag="AGROH133_03536" /db_xref="GeneID:10266093" CDS 339861..340265 /locus_tag="AGROH133_03536" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277646.1" /db_xref="GI:325291782" /db_xref="GeneID:10266093" /translation="MSFAENRRIALITLVVDDYDRAKTFYCEVLGFDCLSDQSLDDGK RWLVVKPQGTDGCALLLAEADGEAQRLAIGNQTGGRVGFFLHTDDFGRDYETMLARGV RFLEEPRHEVYGSVAVFADPYGNHWDLLQPRG" misc_feature 339891..340253 /locus_tag="AGROH133_03536" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_16; cd07263" /db_xref="CDD:176684" gene 340369..341433 /gene="trpS" /locus_tag="AGROH133_03537" /db_xref="GeneID:10266094" CDS 340369..341433 /gene="trpS" /locus_tag="AGROH133_03537" /EC_number="6.1.1.2" /note="catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="Tryptophanyl-tRNA synthetase" /protein_id="YP_004277647.1" /db_xref="GI:325291783" /db_xref="GeneID:10266094" /translation="MNAFKPLVFSGVQPTGNLHLGNYLGAIRKFVALQEDNDCIYCVV DMHAITAQLVHSDLKAQTRSIAAAFIAAGIDPVKHIVFNQSAVPQHAELAWIFNCVAR IGWMERMTQFKDKSGKNAEQVSLGLLAYPSLMAADILVYRATHVPVGDDQKQHLELAR DIAQKFNIDFGDHIRNAGLGLDITVGNEPVHAYFPMVEPLIGGPAPRVMSLKDGTKKM SKSDPSDLSRINLMDDVDAISRKIKKAKTDPDALPSEVEGLKGRPEAENLVGIYAALS DKTKAEVLLEFGGQQFSAFKPALVELAVNVLAPVNNEMRRLLDDPTHIDAILKQGGER ARAIAENTMNEVRDIIGFLR" misc_feature 340381..341424 /gene="trpS" /locus_tag="AGROH133_03537" /note="tryptophanyl-tRNA synthetase; Region: trpS; TIGR00233" /db_xref="CDD:188035" misc_feature 340390..341271 /gene="trpS" /locus_tag="AGROH133_03537" /note="catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806" /db_xref="CDD:173903" misc_feature order(340393..340407,340423..340425,340429..340434, 340441..340443,340492..340494,340507..340509, 340618..340620,340756..340758,340768..340770, 340777..340779,340804..340806,340810..340815, 340819..340824,340831..340833,340987..340989, 341017..341022,341026..341028) /gene="trpS" /locus_tag="AGROH133_03537" /note="active site" /db_xref="CDD:173903" misc_feature 340423..340434 /gene="trpS" /locus_tag="AGROH133_03537" /note="HIGH motif; other site" /db_xref="CDD:173903" misc_feature order(340504..340506,340513..340518,340636..340641, 340645..340653,340660..340665,340669..340680, 340684..340689,340744..340746,340750..340755, 340762..340767) /gene="trpS" /locus_tag="AGROH133_03537" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173903" misc_feature 341017..341031 /gene="trpS" /locus_tag="AGROH133_03537" /note="KMSKS motif; other site" /db_xref="CDD:173903" gene 341549..342040 /locus_tag="AGROH133_03538" /db_xref="GeneID:10266095" CDS 341549..342040 /locus_tag="AGROH133_03538" /note="Universal stress protein family; Universal stress protein UspA and related nucleotide-binding proteins" /codon_start=1 /transl_table=11 /product="universal stress protein" /protein_id="YP_004277648.1" /db_xref="GI:325291784" /db_xref="GeneID:10266095" /translation="MVSKRLSRLEGHRRKFLAVIDDTPECERAVHYAGRRAKNSNGGL VLLYMIPEGDFQQWLGVEQIMRAEAREEAEATLAKIAQKVRETIGIEPEAVIREGGAT EQIHGLIEEDRDIAILVLAAGSTKEGPGPLVSSISGRGAAFPIPVTVLPDTLTDEEID ALC" misc_feature 341582..342001 /locus_tag="AGROH133_03538" /note="Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide; Region: AANH_like; cl00292" /db_xref="CDD:193753" gene 342210..342773 /locus_tag="AGROH133_03539" /db_xref="GeneID:10266096" CDS 342210..342773 /locus_tag="AGROH133_03539" /note="NIF system FeS cluster assembly, NifU-like scaffold; Thioredoxin-like proteins and domains" /codon_start=1 /transl_table=11 /product="scaffold protein Nfu/NifU" /protein_id="YP_004277649.1" /db_xref="GI:325291785" /db_xref="GeneID:10266096" /translation="MFIQTEATPNPATLKFLPGKVVLESGTAEFLNPAQAQASPLAER LFTIPGVTGVYFGFDFITVTKDDAEWQHLKPAILGSIMEHFMSGRPIMGTAIAAEVSD EEGEFFEAGDETIVATIKELLDTRVRPAVAQDGGDITFRGFRDGTVFLNMKGACSGCP SSTATLKHGVQNLLRHFVPEVREVEAV" misc_feature 342216..342473 /locus_tag="AGROH133_03539" /note="Scaffold protein Nfu/NifU N terminal; Region: Nfu_N; pfam08712" /db_xref="CDD:192133" misc_feature 342552..342770 /locus_tag="AGROH133_03539" /note="NifU-like domain; Region: NifU; cl00484" /db_xref="CDD:153799" gene 342795..343463 /locus_tag="AGROH133_03540" /db_xref="GeneID:10266097" CDS 342795..343463 /locus_tag="AGROH133_03540" /note="O-sialoglycoprotein endopeptidase protein; Inactive homolog of metal-dependent proteases, molecular chaperone" /codon_start=1 /transl_table=11 /product="peptidase M22 glycoprotease" /protein_id="YP_004277650.1" /db_xref="GI:325291786" /db_xref="GeneID:10266097" /translation="MIVLALDTSGVDCSACVYDSASDTVLGEVCETIGKGHAERLMAV IDGALQQAQLPLQKVGRIAVTIGPGSFTGIRVGVAAARGFALSLGIEAVGVTTLETIA LHHLLENPGRPVAVGLDAKRGEAYLQTFAEDGSPLLEAALLSLEDAKTALSGFDGAII GSAAPLFQGFDTGSGPDHFPISTVARAGGRKPKGMPKPAPLYLRGPDARPQTGFALAR QSVA" misc_feature 342801..343406 /locus_tag="AGROH133_03540" /note="Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214; cl14000" /db_xref="CDD:189252" gene 343503..343997 /locus_tag="AGROH133_03541" /db_xref="GeneID:10266098" CDS 343503..343997 /locus_tag="AGROH133_03541" /EC_number="2.3.1.128" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family; Acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004277651.1" /db_xref="GI:325291787" /db_xref="GeneID:10266098" /translation="MFDEYLSWKPYFEIVPMQHEDCAGVAELHALRFPRPWNDGEFSG LLTQGSVFGAVARQTNAFFSKPLGGFVLAREVAGEAEILTVAVADKFARTGLGWRLMQ SAVREAMMRGAETMFLEVDSNNASALGLYKKLGFKTVAERKAYYTAKDGAKSTALVMR RDLR" misc_feature 343563..343979 /locus_tag="AGROH133_03541" /note="ribosomal-protein-alanine acetyltransferase; Region: rimI; TIGR01575" /db_xref="CDD:162430" misc_feature <343707..343979 /locus_tag="AGROH133_03541" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene 344067..344495 /gene="fur" /locus_tag="AGROH133_03542" /db_xref="GeneID:10266099" CDS 344067..344495 /gene="fur" /locus_tag="AGROH133_03542" /note="Ferric uptake regulator family; Fe2+/Zn2+ uptake regulation proteins" /codon_start=1 /transl_table=11 /product="ferric uptake regulator" /protein_id="YP_004277652.1" /db_xref="GI:325291788" /db_xref="GeneID:10266099" /translation="MIDLSKTLEELCAERGMRMTDQRRVIARVLQESADHPDVEELYR RSSAVDPRISISTVYRTVKLFEDAGIIERHDFRDGRSRYETVPEEHHDHLIDLKNSVV IEFHSPEIEALQEKIAREHGFKLVDHRLELYGVPLKPGEH" misc_feature 344130..344471 /gene="fur" /locus_tag="AGROH133_03542" /note="Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153" /db_xref="CDD:133478" misc_feature order(344172..344174,344316..344318,344337..344339, 344343..344345,344376..344378) /gene="fur" /locus_tag="AGROH133_03542" /note="metal binding site 2 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature 344226..344270 /gene="fur" /locus_tag="AGROH133_03542" /note="putative DNA binding helix; other site" /db_xref="CDD:133478" misc_feature order(344334..344336,344340..344342,344397..344399, 344448..344450) /gene="fur" /locus_tag="AGROH133_03542" /note="metal binding site 1 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature order(344349..344357,344403..344408,344433..344441, 344445..344471) /gene="fur" /locus_tag="AGROH133_03542" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133478" misc_feature order(344352..344354,344361..344363) /gene="fur" /locus_tag="AGROH133_03542" /note="structural Zn2+ binding site [ion binding]; other site" /db_xref="CDD:133478" gene 344526..345320 /gene="plsC" /locus_tag="AGROH133_03543" /db_xref="GeneID:10266100" CDS 344526..345320 /gene="plsC" /locus_tag="AGROH133_03543" /EC_number="2.3.1.51" /codon_start=1 /transl_table=11 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase" /protein_id="YP_004277653.1" /db_xref="GI:325291789" /db_xref="GeneID:10266100" /translation="MMWLRTAYIAVVLLIVTLILLPLQLLGLAFDWRLRRRIPRIWHR IACHVLGIRVHVHGDVERAKPLMLAVNHASWKDILVLGSIADVVFIAKTEVRDWPVFG WLARLQKSIFVQREQKRSTGAQVDEIAARMADGEIVVLFPEGTTSDGNRMLAVKSSLF GAASTAAEQVPGKLVYVQPVAIAYTRVQGMAMGRYHRVIAAWPGSITLVPHLLGIIRA GAIDVDVTFGDSVPFHSTDNRKRLATDIAASIRSMLAFSLRGGWRK" misc_feature 344664..345278 /gene="plsC" /locus_tag="AGROH133_03543" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989" /db_xref="CDD:153251" misc_feature order(344739..344741,344748..344750,344754..344756, 344796..344807,344955..344963) /gene="plsC" /locus_tag="AGROH133_03543" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153251" gene 345385..346788 /gene="miaB" /locus_tag="AGROH133_03545" /db_xref="GeneID:10266101" CDS 345385..346788 /gene="miaB" /locus_tag="AGROH133_03545" /note="tRNA-i(6)A37 modification enzyme MiaB, Uncharacterized protein family UPF0004, TIGR00089: RNA modification enzyme, MiaB family; 2-methylthioadenine synthetase" /codon_start=1 /transl_table=11 /product="miaB protein" /protein_id="YP_004277654.1" /db_xref="GI:325291790" /db_xref="GeneID:10266101" /translation="MTQETLGLDAPEMIAREGSNSRKVFIKTYGCQMNVYDSVRMSDA LAKDGYVQTEDMGEADLVLLNTCHIREKAAEKVYSALGRLRDMKKSREEQGREFVIGV AGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALKRVRGGERVIETEYAVEDKFEHL PVAEKATLRTRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVRQIVDEAMKLVDAG VREITLLGQNVNAWQGEGSKGEKWGLAELLYRLAEIPGLARLRYTTSHPRDMDDRLIG AHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIEKIRAARPDIAMSGDFIV GFPGETDRDFEDTMAIIEQVKYAQAFSFKYSTRPGTPGADLTDQVAEEVKAERLERLQ ALLLRQQKEFAESLVGKTMDVLLEKPGRMPEQLIGRSPWLQSVNLDAKTLKIGDIVNV RITATGPNSLFAEVAES" misc_feature 345439..346785 /gene="miaB" /locus_tag="AGROH133_03545" /note="(dimethylallyl)adenosine tRNA methylthiotransferase; Provisional; Region: PRK14325" /db_xref="CDD:184622" misc_feature 345451..345762 /gene="miaB" /locus_tag="AGROH133_03545" /note="Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919" /db_xref="CDD:189770" misc_feature 345928..346530 /gene="miaB" /locus_tag="AGROH133_03545" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(345931..345933,345937..345939,345943..345945, 345949..345957,346057..346059,346090..346095, 346171..346179,346249..346251,346381..346383, 346474..346476) /gene="miaB" /locus_tag="AGROH133_03545" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature 346594..346776 /gene="miaB" /locus_tag="AGROH133_03545" /note="TRAM domain; Region: TRAM; cl01282" /db_xref="CDD:120537" gene 346808..347884 /gene="phoH" /locus_tag="AGROH133_03546" /db_xref="GeneID:10266102" CDS 346808..347884 /gene="phoH" /locus_tag="AGROH133_03546" /note="PhoH-like protein; Phosphate starvation-inducible protein PhoH, ATPase" /codon_start=1 /transl_table=11 /product="phosphate starvation inducible protein" /protein_id="YP_004277655.1" /db_xref="GI:325291791" /db_xref="GeneID:10266102" /translation="MGQEPDRLNAHELVSPSSRQPRQAATDANHFVLTFENNRIAGEL FGQFDQNLKLLEQRLNIDARPRGNSVAITGDVVATNQARRALDFLYERLLKGGTAEVS DVEGAIRMAMAADDQLTLPTMERKAKISMAQISTRKKTVAARTPTQDVYMRALEQSEL VFGVGPAGTGKTYLAVAHAAQLLERGAVDRIILSRPAVEAGERLGFLPGDMKEKVDPY LRPLYDALYDMMPGDKVERAIQAGVIEIAPLAFMRGRTLANAAVILDEAQNTTTMQMK MFLTRLGEKGRMIVTGDPSQVDLPRGVKSGLVEALQILTDVEGVSVVRFKDVDVVRHP MVARIVRAYESHTAVPDESLVKGN" misc_feature 346856..347869 /gene="phoH" /locus_tag="AGROH133_03546" /note="Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702" /db_xref="CDD:31888" misc_feature 347225..347839 /gene="phoH" /locus_tag="AGROH133_03546" /note="PhoH-like protein; Region: PhoH; cl12134" /db_xref="CDD:196351" gene 347894..348400 /locus_tag="AGROH133_03547" /db_xref="GeneID:10266103" CDS 347894..348400 /locus_tag="AGROH133_03547" /note="Protein of unknown function UPF0054; Predicted metal-dependent hydrolase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277656.1" /db_xref="GI:325291792" /db_xref="GeneID:10266103" /translation="MTALDIQISVEAEGWSSEEDLLAFATKALDAAVDFLKREENQPF PKMPVELSLVFTDDENIREINAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIAR ETVEREALELEKSFEDHLTHLLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSD PYAGQEPL" misc_feature 347906..348391 /locus_tag="AGROH133_03547" /note="Uncharacterized protein family UPF0054; Region: UPF0054; cl00402" /db_xref="CDD:185971" gene 348416..349561 /locus_tag="AGROH133_03548" /db_xref="GeneID:10266104" CDS 348416..349561 /locus_tag="AGROH133_03548" /note="Cystathionine beta-synthase, core; Hemolysins and related proteins containing CBS domains" /codon_start=1 /transl_table=11 /product="hemolysin" /protein_id="YP_004277657.1" /db_xref="GI:325291793" /db_xref="GeneID:10266104" /translation="MNEHSARPANEGRENGEQSSSEEGSSHLRNDSNAKPRSTIWSRI GRLLKPSQGERLREDLTDALMDDTEIGAAFSPEERAMLNNILRFREVRVEDIMIPRVD IDGLDQNMTIGEALILFEETGRSRMPVYDETLDNPKGMIHIRDLLAYVAKQARNKRRV GSRGVAYGEAKAPRSPRPNFDLARVDLEQTVADAGLVRKILFAPPSMLASDLLKTMQA QRTQLALVIDEYGGTDGLVSHEDIVEMVVGDIDDEHDKDETMFSRLSADVLVADARAE LTELAEAIGPEFDVREHLEEIDTLGGLIFFALGRIPAKGEVVRAVPGFEFQILDADTR RIKGVRIVRDHGSEGQDDRAPGDADADEVIPLPAPDVRLITHQQNAD" misc_feature 348494..349438 /locus_tag="AGROH133_03548" /note="Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]; Region: CorC; COG4535" /db_xref="CDD:34182" misc_feature 348716..349147 /locus_tag="AGROH133_03548" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590" /db_xref="CDD:73090" misc_feature 349202..349447 /locus_tag="AGROH133_03548" /note="Transporter associated domain; Region: CorC_HlyC; pfam03471" /db_xref="CDD:190650" gene 349761..351350 /gene="lnt" /locus_tag="AGROH133_03549" /db_xref="GeneID:10266105" CDS 349761..351350 /gene="lnt" /locus_tag="AGROH133_03549" /EC_number="2.3.1.-" /note="Transfers the fatty acyl group on membrane lipoproteins" /codon_start=1 /transl_table=11 /product="Apolipoprotein N-acyltransferase" /protein_id="YP_004277658.1" /db_xref="GI:325291794" /db_xref="GeneID:10266105" /translation="MERLAGRVMLAGGKSRAVMAIAAGAVGALALPPVGFFAALFLSF TLLVWLVDGCTGKPGGGIFSRIMPAFGIGWCFGLGYFVAGLWWLGNALLLEADEFAWA LPLAILGLPAVLAVFYGFAVAAANIVWSDGLGRIAALAAAFGLLEWLRSFIATGFPWN AIGYGIMPVPIMMQSAHLLGLFGVTTLAVFIFASPALIGTKKGMWPGLIVAGLLLAGH FGYGFYRLQTPLETPANALTVRIVQPSIDQSRKMLNADRAEIFSEHLRLTGLPPGEGK KRPDIIVWPETSVPFILTQNPDALAEIAKTLEDGQVLFTGAVRMEDAGAGRPPRYYNS VYAIDSQGEIIGATDKVHLTPFGEYVPFEDILRGFGINNVISLPGGFSAASSRTPLTL PSGKTLYPLICYEIIFPEEMTPGLAGAAAILNVTNDGWFGDTPGPYQHFLQARVRAVE TGVPVIRGANTGISAVIDPYGRIIAGLDYGRVGIVDATLSGGSNDAVTYDIHRTYFWL IFSIMLTVSVFSAWRFARRQN" misc_feature 349902..351341 /gene="lnt" /locus_tag="AGROH133_03549" /note="apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302" /db_xref="CDD:178970" misc_feature 350469..351299 /gene="lnt" /locus_tag="AGROH133_03549" /note="Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571" /db_xref="CDD:143595" misc_feature order(350616..350618,350808..350810,350820..350822, 350832..350834,350967..350972,350976..350981, 351039..351041) /gene="lnt" /locus_tag="AGROH133_03549" /note="putative active site [active]" /db_xref="CDD:143595" misc_feature order(350616..350618,350808..350810,350967..350969) /gene="lnt" /locus_tag="AGROH133_03549" /note="catalytic triad [active]" /db_xref="CDD:143595" misc_feature order(350811..350822,350829..350831,350850..350858, 350970..350972,350976..350990,350997..351002, 351084..351089,351093..351101,351105..351110, 351144..351149,351276..351290) /gene="lnt" /locus_tag="AGROH133_03549" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143595" gene 351482..351904 /locus_tag="AGROH133_03557" /db_xref="GeneID:10266106" CDS 351482..351904 /locus_tag="AGROH133_03557" /note="Lambda repressor-like, DNA-binding, Helix-turn-helix; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_004277659.1" /db_xref="GI:325291795" /db_xref="GeneID:10266106" /translation="MMTENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQ IQKYEKGTNRVGASRLQNISAILNVPVSFFFEDAPGDQAVGTTGMAEASSSNYVVDFL SSAEGLQLNRAFVKIADPKVRRRLVDLVKSLAAEGDAE" misc_feature 351524..351874 /locus_tag="AGROH133_03557" /note="Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396" /db_xref="CDD:31586" misc_feature 351530..351703 /locus_tag="AGROH133_03557" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(351542..351544,351554..351556,351629..351631) /locus_tag="AGROH133_03557" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(351551..351553,351626..351628) /locus_tag="AGROH133_03557" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(351572..351577,351608..351610,351617..351619, 351629..351634) /locus_tag="AGROH133_03557" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene 352093..353355 /gene="metK" /locus_tag="AGROH133_03559" /db_xref="GeneID:10266107" CDS 352093..353355 /gene="metK" /locus_tag="AGROH133_03559" /EC_number="2.5.1.6" /note="catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine synthetase" /protein_id="YP_004277660.1" /db_xref="GI:325291796" /db_xref="GeneID:10266107" /translation="MRANYLFTSESVAEGHPDKVCDRISDEIVDLIYREASKTGVDPW TVRIACETLATTNRVIIAGEVRVPDTLLKKDKDGKVLKDAAGHPVINPSKFKSAARKA IRDIGYEQDGFHWKTAKIDVLLHPQSADIAQGVDNASDKQGDEGAGDQGIMFGYACTE TPDLMPAPIYYSHRILQLLATARKSGEGEAAKLGPDAKSQVTVRYVDGKASEAVSIVL STQHLDASWDSKKVREVVEPYIREALGDLKIADDCQWYINPTGKFVIGGPDGDAGLTG RKIIVDTYGGAAPHGGGAFSGKDTTKVDRSAAYAARYLAKNVVAAGLAERCTIQISYA IGIAQPLSIYVDLHGTGKVSEDQVEGAIRKVMDLSPSGIRRHLDLNKPIYAKTSSYGH FGRKAGRDGSFSWEKLDLVKPLKEALSA" misc_feature 352102..353352 /gene="metK" /locus_tag="AGROH133_03559" /note="S-adenosylmethionine synthetase; Validated; Region: PRK05250" /db_xref="CDD:179974" misc_feature 352105..352479 /gene="metK" /locus_tag="AGROH133_03559" /note="S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438" /db_xref="CDD:189548" misc_feature 352519..352881 /gene="metK" /locus_tag="AGROH133_03559" /note="S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772" /db_xref="CDD:190418" misc_feature 352885..353313 /gene="metK" /locus_tag="AGROH133_03559" /note="S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773" /db_xref="CDD:111646" gene 353529..354227 /gene="trmB" /locus_tag="AGROH133_03560" /db_xref="GeneID:10266108" CDS 353529..354227 /gene="trmB" /locus_tag="AGROH133_03560" /EC_number="2.1.1.33" /note="tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; Predicted S-adenosylmethionine-dependent methyltransferase" /codon_start=1 /transl_table=11 /product="tRNA guanine-N7-methyltransferase" /protein_id="YP_004277661.1" /db_xref="GI:325291797" /db_xref="GeneID:10266108" /translation="MTEERRSRATEAFFGRRKGKPLRNQQIDTIENLLPLLKIDLESA PPKNLVALFPADVKSVRLEIGFGGGEHLAHRAVENPETGFIGVEPFVNSMAKLLASVR EGELMNIRLYDDDATQLLDWLPDGSIDHIDLLYPDPWPKKKHWKRRFVSDVNLARFHR VLKPGGKFCFASDIDTYVNWTLQHCARHGGFEWTAASAEDWHTPYANWPGTRYENKAK REGRSSAYLTFIRI" misc_feature 353565..354188 /gene="trmB" /locus_tag="AGROH133_03560" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(354240..355139) /gene="rbsK" /locus_tag="AGROH133_03561" /db_xref="GeneID:10266109" CDS complement(354240..355139) /gene="rbsK" /locus_tag="AGROH133_03561" /EC_number="2.7.1.15" /note="Sugar kinases, ribokinase family" /codon_start=1 /transl_table=11 /product="ribokinase" /protein_id="YP_004277662.1" /db_xref="GI:325291798" /db_xref="GeneID:10266109" /translation="MITVFGSINMDLVATAKRLPKPGETVTGETFSTAAGGKGANQAL AARRAGATVKMAGATGDDTFAAPALTLLRDAGTDLSLVKTAPGPTGTAVILIGEGGEN MISVIPAANGEVSASDAARAVAEMAAGDILMLQFEVPAPSIEAALTAAKAKRITTIIN TAPLTADGPRLASLADIVIANETEFELLIGKNGLSASERENELKSLHEQTGQTLIVTL GADGVIAIRNGKVFKASGLKIEPVDTVGAGDTFCGYLAASLDQGMDFEKALKRAAVAG SLACTRAGAQPSIPVAAEVDANI" misc_feature complement(354270..355139) /gene="rbsK" /locus_tag="AGROH133_03561" /note="Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of...; Region: ribokinase; cd01174" /db_xref="CDD:29358" misc_feature complement(order(354285..354287,354393..354395, 354402..354407,354729..354731,354822..354824, 354828..354830,354858..354860,354864..354866, 355017..355019,355026..355034,355107..355109, 355113..355115)) /gene="rbsK" /locus_tag="AGROH133_03561" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29358" misc_feature complement(order(354651..354653,354816..354839, 354855..354863,354867..354869,355026..355028, 355065..355085,355098..355100,355104..355106)) /gene="rbsK" /locus_tag="AGROH133_03561" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29358" misc_feature complement(order(354300..354302,354309..354314, 354321..354323,354387..354389,354396..354401, 354408..354410,354417..354419,354435..354437, 354474..354476,354483..354491,354597..354599)) /gene="rbsK" /locus_tag="AGROH133_03561" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29358" gene complement(355193..356440) /locus_tag="AGROH133_03562" /db_xref="GeneID:10266110" CDS complement(355193..356440) /locus_tag="AGROH133_03562" /note="RmuC family; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277663.1" /db_xref="GI:325291799" /db_xref="GeneID:10266110" /translation="MNVLVLILRITGNLVDLAMSIDFSFLLDPAMRAGSVDISFGGLL AALVFGLSAFWMVTKSRGKKAEADGEISDLLKTQSELHGRIAAMAETLGTRQSEMGQT INQRLDGMSQRLGETLTEQTRSTHENLSRLQERLAVIDAAQGNIQDLAKDVVGLQAIL SNKQTRGAFGQARMEALIADALPAGAFQLQPTLSNGYRPDCIIRMPNNAPSLVIDAKF PLEAWNALKADETPEGKRAATQQFRRDMEVHIRDVAEKYLIRGETQDTAFIFVPSESI FADIHQHFEYLVQRAHRARVVIVSPSLLMLSVQVIQSVLKDQRMREQAHLIQGEVALL MDDVRRLDDRTRKLQAHFGLAQKDVDMMLISSDKVLARGQKIEGLDFSPTEKETSHSE IEQARRFAENRAGTAKLRVVDDE" misc_feature complement(355259..356131) /locus_tag="AGROH133_03562" /note="RmuC family; Region: RmuC; pfam02646" /db_xref="CDD:111535" gene 356535..357047 /gene="def" /locus_tag="AGROH133_03565" /db_xref="GeneID:10266111" CDS 356535..357047 /gene="def" /locus_tag="AGROH133_03565" /EC_number="3.5.1.88" /note="cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); N-formylmethionyl-tRNA deformylase" /codon_start=1 /transl_table=11 /product="polypeptide deformylase peptide deformylase" /protein_id="YP_004277664.1" /db_xref="GI:325291800" /db_xref="GeneID:10266111" /translation="MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPG IGLAAIQVGVPRRMLVIDVSREDEEKKPVVFINPEILRVSDDVSAYEEGCLSIPDYYA EVERPASLTVRYVDRDGKHQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIK KFTKAARAKV" misc_feature 356550..356972 /gene="def" /locus_tag="AGROH133_03565" /note="Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(...; Region: Pep_deformylase; cd00487" /db_xref="CDD:29602" misc_feature order(356664..356672,356685..356687,356811..356819, 356940..356945,356952..356954) /gene="def" /locus_tag="AGROH133_03565" /note="active site" /db_xref="CDD:29602" misc_feature order(356670..356672,356685..356687,356817..356819, 356943..356945) /gene="def" /locus_tag="AGROH133_03565" /note="catalytic residues [active]" /db_xref="CDD:29602" misc_feature order(356814..356816,356940..356942,356952..356954) /gene="def" /locus_tag="AGROH133_03565" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29602" gene 357095..358030 /gene="fmt" /locus_tag="AGROH133_03566" /db_xref="GeneID:10266112" CDS 357095..358030 /gene="fmt" /locus_tag="AGROH133_03566" /EC_number="2.1.2.9" /note="modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth" /codon_start=1 /transl_table=11 /product="methionyl-tRNA formyltransferase" /protein_id="YP_004277665.1" /db_xref="GI:325291801" /db_xref="GeneID:10266112" /translation="MALRIIFMGTPDFSVPTLRALVDAGHEVVAVYTQPPRPGGRRGL DLQKSPVHQAAELLGLPVLTPVNFKAEEDRQQFREFNADVAVVVAYGLLLPEAILSGT RLGCYNGHASLLPRWRGAAPIQRAIMAGDAETGMMVMKMEKGLDTGPVALTAKVTIDE NTTAGELHDSLMLTGARLMRQAMDKLEADDLPLVAQPEEGVVYASKIDKGETRINFSR PAQDVHNHIRGLSPFPGAWLEMEIGGKAERVKVLASELASGMGEAGAVLDEALTIACG SGAVRLTRLQKAGGKPLSAADFVRGTPVPARTRLG" misc_feature 357101..358027 /gene="fmt" /locus_tag="AGROH133_03566" /note="methionyl-tRNA formyltransferase; Reviewed; Region: fmt; PRK00005" /db_xref="CDD:178787" misc_feature 357101..357715 /gene="fmt" /locus_tag="AGROH133_03566" /note="Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646" /db_xref="CDD:187715" misc_feature order(357119..357121,357131..357136,357353..357376, 357389..357391,357416..357427,357449..357451, 357509..357511,357515..357520,357527..357532) /gene="fmt" /locus_tag="AGROH133_03566" /note="putative active site [active]" /db_xref="CDD:187715" misc_feature order(357122..357127,357131..357133,357194..357196, 357206..357208,357212..357217,357221..357226, 357356..357367,357416..357418,357422..357427, 357449..357457,357710..357712) /gene="fmt" /locus_tag="AGROH133_03566" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187715" misc_feature order(357353..357355,357362..357364,357368..357376, 357389..357391,357416..357418,357515..357520, 357527..357532) /gene="fmt" /locus_tag="AGROH133_03566" /note="putative cosubstrate binding site; other site" /db_xref="CDD:187715" misc_feature order(357416..357418,357422..357424,357530..357532) /gene="fmt" /locus_tag="AGROH133_03566" /note="catalytic site [active]" /db_xref="CDD:187715" misc_feature 357725..357979 /gene="fmt" /locus_tag="AGROH133_03566" /note="C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704" /db_xref="CDD:187732" misc_feature order(357791..357793,357836..357838,357842..357844, 357950..357952,357956..357958,357962..357967, 357971..357973) /gene="fmt" /locus_tag="AGROH133_03566" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187732" gene 358030..358830 /gene="truA" /locus_tag="AGROH133_03567" /db_xref="GeneID:10266113" CDS 358030..358830 /gene="truA" /locus_tag="AGROH133_03567" /EC_number="5.4.99.12" /note="mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; Pseudouridylate synthase" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase A" /protein_id="YP_004277666.1" /db_xref="GI:325291802" /db_xref="GeneID:10266113" /translation="MPRFRMTVEYDGTPYFGWQRQDNGPSVQGALEAAVRSLTGETVS IRGAGRTDSGVHAVGQVAHVDLSRDWAPYKLRNALNAHLAMAKEAVSVIDVTAVTEDF DARFSALRRHYLYRIICRKARLALEHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFR SVHCQASSPVRTLDRLDVTRNGDLIEIRATAQSFLHNQIRSFAGTLKMAGEGSMTPED VRAALEARDRKACGPVAPPDGLYFMQVDYPDVIPPRVYSKVETVEDTD" misc_feature 358030..358770 /gene="truA" /locus_tag="AGROH133_03567" /note="tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021" /db_xref="CDD:178798" misc_feature 358045..358770 /gene="truA" /locus_tag="AGROH133_03567" /note="PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1)...; Region: PseudoU_synth_EcTruA; cd02570" /db_xref="CDD:30020" misc_feature order(358054..358056,358267..358269,358276..358278, 358288..358308) /gene="truA" /locus_tag="AGROH133_03567" /note="dimerization interface 3.5A [polypeptide binding]; other site" /db_xref="CDD:30020" misc_feature order(358174..358185,358627..358629) /gene="truA" /locus_tag="AGROH133_03567" /note="active site" /db_xref="CDD:30020" gene complement(358846..359442) /locus_tag="AGROH133_03568" /db_xref="GeneID:10266114" CDS complement(358846..359442) /locus_tag="AGROH133_03568" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_004277667.1" /db_xref="GI:325291803" /db_xref="GeneID:10266114" /translation="MPTASEVRLYLKGLWLLLLGDHTGARYLDLSERGMWRSFYSALW CLPAMLVSWLWLRAAFLASYPPGTGTGFIFFFRLAMVEAICWIVPLLLIGMLLFAFGA REKFAPLVTTMNWLSLPFSYAYAVLILIAFFLPPLQGLIAILWLALLLSLVFAFSRIV RFLIRDQSLLVSAIVMTLLVPGMLLSEALQRFLGVYPA" gene complement(359426..360622) /gene="dapE" /locus_tag="AGROH133_03574" /db_xref="GeneID:10266115" CDS complement(359426..360622) /gene="dapE" /locus_tag="AGROH133_03574" /EC_number="3.5.1.18" /note="dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase, catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is; Acetylornithine deacetylase/Succinyl- diaminopimelate desuccinylase and related deacylases" /codon_start=1 /transl_table=11 /product="succinyl-diaminopimelate desuccinylase" /protein_id="YP_004277668.1" /db_xref="GI:325291804" /db_xref="GeneID:10266115" /translation="MTTTDPVANLAALIRCPSVTPAEGGALSLLDTLLSPLGFAVEKM VATEAGTPDVENLYARLGTEGPHLMLAGHTDVVPVGDEAAWSHPPFAAEIAGGEMFGR GAVDMKGGIACFVAAIARYIEKHGKPKGSVSFLITGDEEGPSINGTSKLLEWAAAKGE TWDACVVGEPTNPDQLGEMIKIGRRGSISGRITVHGVQGHAAYPHLADNPIRGLLQLT HALMYPPFDHGTDDFQPSNLEVTTIDTGNAATNVIPARATASFNIRFNDSWTVESLRA EIIRRLDAAAAEGELRPDRSPVKYEIVWADRPAHVFLTRNNALISSLSGAVEAVTGKE PKLSTTGGTSDARFIKDYCPVVEFGLVGQTMHMVDERVEIADLETLTRIYETFIERWF SHADGK" misc_feature complement(359447..360616) /gene="dapE" /locus_tag="AGROH133_03574" /note="succinyl-diaminopimelate desuccinylase; Reviewed; Region: PRK13009" /db_xref="CDD:183838" misc_feature complement(359459..360604) /gene="dapE" /locus_tag="AGROH133_03574" /note="M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase; Region: M20_DapE_proteobac; cd03891" /db_xref="CDD:193511" misc_feature complement(order(359525..359527,360116..360118, 360200..360205,360305..360307,360404..360406)) /gene="dapE" /locus_tag="AGROH133_03574" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193511" misc_feature complement(order(359600..359602,359831..359833, 359837..359839,359861..359866,359885..359908, 359912..359914,359957..359959,359966..359971, 359975..359980,359987..359992,359996..359998, 360014..360025,360056..360058)) /gene="dapE" /locus_tag="AGROH133_03574" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:193511" gene complement(360637..361491) /gene="dapD" /locus_tag="AGROH133_03575" /db_xref="GeneID:10266116" CDS complement(360637..361491) /gene="dapD" /locus_tag="AGROH133_03575" /EC_number="2.3.1.117" /note="catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; Tetrahydrodipicolinate N-succinyltransferase" /codon_start=1 /transl_table=11 /product="2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase" /protein_id="YP_004277669.1" /db_xref="GI:325291805" /db_xref="GeneID:10266116" /translation="MSLPDLTSLETTIETAFDNRDGVNVSTKGEVRDAVNTSLQLLDS GKVRVAEKQADGNWKVNQWLKKAVLLSFRLNDMEIVTGGPGESTWWDKVPSKFENWGE NQFRAAGFRAVPNAVVRRSAYVAKNVVLMPSFVNLGAYVDEGTMVDTWATVGSCAQIG KNVHLSGGVGIGGVLEPLQAGPTIIEDNCFIGARSEVVEGCIVREGAVLGMGVFIGKS TKIVDRATGEITYGEVPPYSVVVAGTMPGKPFPNGEPGPSLYCAVIVKRVDEKTRSKT GINELLRD" misc_feature complement(360643..361476) /gene="dapD" /locus_tag="AGROH133_03575" /note="2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional; Region: dapD; PRK11830" /db_xref="CDD:183330" misc_feature complement(360754..361167) /gene="dapD" /locus_tag="AGROH133_03575" /note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA...; Region: LbH_THP_succinylT; cd03350" /db_xref="CDD:100041" misc_feature complement(order(360754..360756,360760..360771, 360850..360852,360904..360906,360910..360912, 360988..360990,361036..361044,361090..361092, 361096..361098,361144..361149,361156..361161)) /gene="dapD" /locus_tag="AGROH133_03575" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100041" misc_feature complement(order(360859..360864,360895..360897, 360910..360918,360955..360957,360964..360969, 360973..360975,360994..360996,361000..361002, 361027..361029,361048..361050,361084..361086, 361099..361101,361135..361137,361159..361161)) /gene="dapD" /locus_tag="AGROH133_03575" /note="active site" /db_xref="CDD:100041" misc_feature complement(order(360967..360969,361027..361029, 361048..361050,361084..361086,361099..361101, 361135..361137,361159..361161)) /gene="dapD" /locus_tag="AGROH133_03575" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100041" misc_feature complement(order(360859..360864,360895..360897, 360910..360918,360955..360957,360973..360975, 360991..360996)) /gene="dapD" /locus_tag="AGROH133_03575" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100041" gene 361579..362496 /locus_tag="AGROH133_03576" /db_xref="GeneID:10266117" CDS 361579..362496 /locus_tag="AGROH133_03576" /note="Conserved hypothetical protein CHP00730, Possible lysine decarboxylase; Predicted Rossmann fold nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277670.1" /db_xref="GI:325291806" /db_xref="GeneID:10266117" /translation="MERRQCDLGDLAHQTKGLEMTRLKNGKLRRKDGVWDPLKRSSAD KQQADVIPKTPQSDSPSYRLAYADMDFLCREELRPVRLQLELLKTEMALTERGIKSTV VMFGGARIPEPGGEAWAARNETQKRNLEQSSVYYEEARKFARLCTDYGAKSDHLEYVV VTGGGPGVMEAGNRGAADVGGPSIGLNIVLPHEQAPNPYVTPELSFNFHYFAIRKMHF LMRAKAVVIFPGGFGTLDELFETLTLIQTKRMAPIPLILFGEKFWRSVVNFEFLADFG TIAPEDMELLHFAETADDAWNIVSAYYEH" misc_feature 361840..362493 /locus_tag="AGROH133_03576" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene 362621..365008 /gene="mcpA1" /locus_tag="AGROH133_03577" /db_xref="GeneID:10266118" CDS 362621..365008 /gene="mcpA1" /locus_tag="AGROH133_03577" /note="Bacterial chemotaxis sensory transducer, methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004277671.1" /db_xref="GI:325291807" /db_xref="GeneID:10266118" /translation="MTPAFSAGDLIEAKMFNFKVKSLATKLILVTGCAITTVLVASNS FLISQTSDRVHSLTMDQANTEARAIANVIAADVGELGSAARSMAGIIGRAHQAKSMDR PGIVNILKANVEQNAFAFGSWFCEQLGLFDGQTTEIANRLDLGTNATGAFAPYWSKTQ NGDIQFSTFKNDYAAEWYSLAAKSGKGAITQPYLAEGTEVPTTMTSLAYPVMSDGKMI GVAGVDISLAALSQKLQALHPFETGRVTLISQGGQWLVPPTPEQNMKAYDGEGASTVQ AAITSGKQGLIENLGLDTDAPYNRLVYPFAVPGLNATWVVLVDIPHQALNAPVQEQTY LMILGAIVILAAVIAALYFSVRYFVRNPLASLVSDVKTLSDGRYDVPVSGQERRDETG AVATALEGFRAKLAGIREMEADAAVQRGNAETERQRSESERNENSRMQQHIVSVLGAG LNALSQGNLTYRIEDQFPGEYAKLRNDFNSALASLEETVSTVNGTVASIGNGTGEITR AASDLSHRTEQQAASLEETAAALNQLTAQVNSSAENAAQAATAVSNACDDAGKSGEVV QQAVSSMEGIAQSSAEISRIIGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQE VRELAQRSATAAKEIKGLINTSARQVGEGVQLVGKAGETMRKIADQVLQINQLIRQIS ASASEQAVGLKEINSAVTQMDQVTQQNAAMVEETTAASVTLNSEAETLKSLVAGFSVS GGHSSQSGQQLRATAAAMRAPVAPSQASGRSAATQRSRPRTSGANALAQDDWTEF" misc_feature 364103..364831 /gene="mcpA1" /locus_tag="AGROH133_03577" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 364301..364831 /gene="mcpA1" /locus_tag="AGROH133_03577" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(365082..366026) /gene="iunH" /locus_tag="AGROH133_03580" /db_xref="GeneID:10266119" CDS complement(365082..366026) /gene="iunH" /locus_tag="AGROH133_03580" /EC_number="3.2.2.1" /note="Inosine-uridine nucleoside N-ribohydrolase" /codon_start=1 /transl_table=11 /product="inosine-uridine preferring nucleoside hydrolase" /protein_id="YP_004277672.1" /db_xref="GI:325291808" /db_xref="GeneID:10266119" /translation="MAERRKIIIDTDPGQDDAAAIMLAFASPEEIEILGLCAVAGNVP LKLTSRNIRIICELCDRTDIPVYEGAERPLVRKPITAEHVHGSTGLDGPVLDEPTMEA QKQHAVDFIIETLLREPAGTVTLCTLGALTNVALALQKAPEIAGRVKELVMMGGGFFE GGNITPAAEFNIYVDPQAADIVFRSGVPIVVMPLDVTHQLLTTKARVSRIRDIGTRPA IAMAEMLEFFERFDIEKYGSDGGPLHDPSVIAYLLKPELFQGRDCNVEIEVNSELTMG MTVVDWWRVTERPVNARVMRNVDADGFFELLTERFARL" misc_feature complement(365097..366011) /gene="iunH" /locus_tag="AGROH133_03580" /note="nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the...; Region: nuc_hydro_IU_UC_XIUA; cd02651" /db_xref="CDD:29579" misc_feature complement(order(365292..365294,365514..365516, 365520..365522,365538..365540,365643..365645, 365775..365777,365901..365903,365976..365981, 365991..365993)) /gene="iunH" /locus_tag="AGROH133_03580" /note="active site" /db_xref="CDD:29579" misc_feature complement(order(365205..365207,365214..365219, 365223..365225,365484..365486,365610..365612, 365805..365807)) /gene="iunH" /locus_tag="AGROH133_03580" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:29579" gene 366239..366664 /gene="hspH" /locus_tag="AGROH133_03581" /db_xref="GeneID:10266120" CDS 366239..366664 /gene="hspH" /locus_tag="AGROH133_03581" /note="Hsp20/alpha crystallin family; Molecular chaperone (small heat shock protein)" /codon_start=1 /transl_table=11 /product="small heat shock protein" /protein_id="YP_004277673.1" /db_xref="GI:325291809" /db_xref="GeneID:10266120" /translation="MSRMTPFTHPLLLGFDAMEKTLERMAKANDGYPPYNIERLPGGE DVPERLRITIAVAGFSQDDLDVTTADNQLVIRGRQQEQEKRDFLYRGIAARQFQRVFV LADGMQVRDARLRNGLLAIDLVKPEISNVVKKINISVSE" misc_feature 366335..366613 /gene="hspH" /locus_tag="AGROH133_03581" /note="Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein...; Region: ACD_IbpA-B_like; cd06470" /db_xref="CDD:107227" misc_feature order(366341..366355,366395..366397,366401..366403, 366407..366412,366533..366535,366587..366592) /gene="hspH" /locus_tag="AGROH133_03581" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107227" gene 366721..366978 /locus_tag="AGROH133_03582" /db_xref="GeneID:10266121" CDS 366721..366978 /locus_tag="AGROH133_03582" /note="Protein of unknown function DUF1150; Uncharacterized small protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277674.1" /db_xref="GI:325291810" /db_xref="GeneID:10266121" /translation="MLLKEAHARLTRSQLAHIGEGEVGYIRKIRAEDVSRCFPEAPDL DPQLDLWALFGADGTPILLTDNRSSTFFKAAEDDLKTVSLH" misc_feature 366721..366975 /locus_tag="AGROH133_03582" /note="Protein of unknown function (DUF1150); Region: DUF1150; cl11577" /db_xref="CDD:159557" gene complement(367022..367612) /locus_tag="AGROH133_03583" /db_xref="GeneID:10266122" CDS complement(367022..367612) /locus_tag="AGROH133_03583" /note="EF-Hand type" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277675.1" /db_xref="GI:325291811" /db_xref="GeneID:10266122" /translation="MSTRKIALSALGAALLLGSAATASFAAPPAQGKGHGERMPFRPE LAFVQLLKVADTNKDGKITKEEFAARQDALFAEIDKDKDGSITPKEMREYRQAKMEAF RAAHPRPEAANAKAGEGKGPEGKRAGREHGGRQGWGKHGGKGGAFAMMRMADTDENGQ VSKAEFTAAGEKMFERLDRNKDGVISIDDMPDRPFL" misc_feature complement(367337..>367477) /locus_tag="AGROH133_03583" /note="transaldolase/EF-hand domain-containing protein; Provisional; Region: PRK12309" /db_xref="CDD:183426" gene complement(367741..368454) /locus_tag="AGROH133_03586" /db_xref="GeneID:10266123" CDS complement(367741..368454) /locus_tag="AGROH133_03586" /note="haloacid dehalogenase-like hydrolase, Pyr-5-nucltdase: pyrimidine 5'-nucleotidase; Predicted hydrolase (HAD superfamily)" /codon_start=1 /transl_table=11 /product="pyrimidine 5'-nucleotidase" /protein_id="YP_004277676.1" /db_xref="GI:325291812" /db_xref="GeneID:10266123" /translation="MDTKPKNLPDAADFAHVSEWVFDLDNTLYPHHVNLFSQIDRNMT AYVAELLKLEPDEARALQKRYYHEHGTTLQGLMIHYGISPDEFLERAHAIDYSALSPH PELGEAIKALPGRKFILTNGSVKHAQAAAGALGILDHFEDIFDIVAADYLPKPASATY EKFAALAKLDTRKAAMFEDLPRNLAAPKALGMKTVLLVPSNLEGVIMERWEIPAATDE HIDYITDDLTGFLIKTIAR" misc_feature complement(367765..368415) /locus_tag="AGROH133_03586" /note="Predicted hydrolase (HAD superfamily) [General function prediction only]; Region: COG1011" /db_xref="CDD:31215" misc_feature complement(367864..368403) /locus_tag="AGROH133_03586" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 368447..369478 /locus_tag="AGROH133_03587" /db_xref="GeneID:10266124" CDS 368447..369478 /locus_tag="AGROH133_03587" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277677.1" /db_xref="GI:325291813" /db_xref="GeneID:10266124" /translation="MSMGSFMPVSNAEENRKDDDRRENRAWLRRPAHDTAKIMELWIG ITFVSAFLQNLRSTLQKHLKGMMGTTGATFVRFVFGMPFALAYLGFLHGVLGRPLPVP NMSFAVWAMVGAMAQIAATFLLVHLFSFRNFAVGTAYSRTEPAQAALFALIFVGESVN GGTLAAIAISVAGVMLISVARTEVTPASILTSIFSRTAGIGLASGAFFGLSSVAYRSA SLALAPSLPAPDAVMQAGFTLVVVIVTQTLAMFLWIIWRERDELRRIAKAWKPSLAVG FVGATASFGWFTAMTLQQAAVVKALAQVEMLFAFASTVLFFKEKINRLELSGCLLIVL GVLSLLIFG" gene complement(369527..370411) /gene="argB" /locus_tag="AGROH133_03596" /db_xref="GeneID:10266125" CDS complement(369527..370411) /gene="argB" /locus_tag="AGROH133_03596" /EC_number="2.7.2.8" /note="catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate" /codon_start=1 /transl_table=11 /product="Acetylglutamate kinase" /protein_id="YP_004277678.1" /db_xref="GI:325291814" /db_xref="GeneID:10266125" /translation="MTASESETQARLLAQALPFMQKYENKTIVVKYGGHAMGDSTLGK AFAEDIALLKQSGINPIVVHGGGPQIGAMLTKMGIESKFESGLRVTDAKTVEIVEMVL AGSINKEIVALINQTGEWAIGLCGKDGNMVFAEKAKKTVVDPDSNIERVLDLGFVGEV VEVDRTLLDLLAKSEMIPVIAPVAPGRDGATYNINADTFAGAIAGALNATRLLFLTDV PGVLDKNKELIKELTVSQARALIKDGTISGGMIPKVETCIEAIKAGVQGVVILNGKTA HSVLLEIFTEGAGTLIVP" misc_feature complement(369536..370378) /gene="argB" /locus_tag="AGROH133_03596" /note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using...; Region: AAK_NAGK-C; cd04250" /db_xref="CDD:58616" misc_feature complement(370349..370378) /gene="argB" /locus_tag="AGROH133_03596" /note="feedback inhibition sensing region; other site" /db_xref="CDD:58616" misc_feature complement(order(369557..369559,369569..369574, 369581..369583,369884..369886,369911..369913, 370022..370033,370037..370039,370043..370051, 370055..370057,370076..370078,370088..370090, 370097..370099,370112..370117,370124..370126, 370181..370186,370244..370246,370256..370258, 370268..370270,370349..370354,370361..370363, 370367..370375)) /gene="argB" /locus_tag="AGROH133_03596" /note="homohexameric interface [polypeptide binding]; other site" /db_xref="CDD:58616" misc_feature complement(369533..370336) /gene="argB" /locus_tag="AGROH133_03596" /note="carbamate kinase; Reviewed; Region: PRK12686" /db_xref="CDD:183683" misc_feature complement(order(369653..369655,369662..369667, 369671..369673,369677..369679,369746..369748, 369758..369766,369827..369829,370307..370312, 370319..370321)) /gene="argB" /locus_tag="AGROH133_03596" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58616" misc_feature complement(order(369824..369829,369833..369835, 370148..370153,370214..370219)) /gene="argB" /locus_tag="AGROH133_03596" /note="N-acetyl-L-glutamate binding site [chemical binding]; other site" /db_xref="CDD:58616" gene 370772..371149 /locus_tag="AGROH133_03597" /db_xref="GeneID:10266126" CDS 370772..371149 /locus_tag="AGROH133_03597" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277679.1" /db_xref="GI:325291815" /db_xref="GeneID:10266126" /translation="MTVPDRDKQSGLRDEVLAGEYVLGALPPESMAELAKRVKRDRQF AAMVRRWRDNLAETEYRERAGVAALLDRDPLRSGLPFKGQPLRNGSIFAAMLLEVWNS VRFWRLLALTAMLWTAVLLFTIA" misc_feature 370772..>371146 /locus_tag="AGROH133_03597" /note="Anti-sigma-K factor rskA; Region: RskA; cl02208" /db_xref="CDD:186518" gene complement(371163..371816) /gene="engB" /locus_tag="AGROH133_03599" /db_xref="GeneID:10266127" CDS complement(371163..371816) /gene="engB" /locus_tag="AGROH133_03599" /note="binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; Predicted GTPase" /codon_start=1 /transl_table=11 /product="ribosome biogenesis GTP-binding protein YsxC" /protein_id="YP_004277680.1" /db_xref="GI:325291816" /db_xref="GeneID:10266127" /translation="MSETGPATEKPLFGRPWIFIRGVPAMKFLPPEGPPEIAFAGRSN VGKSSLINALVGHKGLARTSNTPGRTQELNYFVPEGYSGEPGDLPPMALVDMPGYGYA QAPKDHVDAWTKLVFDYLRGRATLKRVYVLIDSRHGIKKNDEEVLGLLDKAAVSYQVV LTKTDKIKDVGVPRLISETLEKIRKRPAAYPEVLATSSEKSFGLDSLRAEIVRTVSL" misc_feature complement(371184..371711) /gene="engB" /locus_tag="AGROH133_03599" /note="The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and...; Region: YihA_EngB; cd01876" /db_xref="CDD:133278" misc_feature complement(371178..371708) /gene="engB" /locus_tag="AGROH133_03599" /note="Elongation factor Tu GTP binding domain; Region: GTP_EFTU; pfam00009" /db_xref="CDD:189340" misc_feature complement(371673..371696) /gene="engB" /locus_tag="AGROH133_03599" /note="G1 box; other site" /db_xref="CDD:133278" misc_feature complement(order(371223..371228,371322..371324, 371328..371330,371532..371534,371607..371615, 371622..371630,371670..371690)) /gene="engB" /locus_tag="AGROH133_03599" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133278" misc_feature complement(371598..371618) /gene="engB" /locus_tag="AGROH133_03599" /note="Switch I region; other site" /db_xref="CDD:133278" misc_feature complement(371607..371609) /gene="engB" /locus_tag="AGROH133_03599" /note="G2 box; other site" /db_xref="CDD:133278" misc_feature complement(371523..371534) /gene="engB" /locus_tag="AGROH133_03599" /note="G3 box; other site" /db_xref="CDD:133278" misc_feature complement(order(371439..371444,371451..371495, 371514..371525)) /gene="engB" /locus_tag="AGROH133_03599" /note="Switch II region; other site" /db_xref="CDD:133278" misc_feature complement(371322..371333) /gene="engB" /locus_tag="AGROH133_03599" /note="G4 box; other site" /db_xref="CDD:133278" misc_feature complement(371220..371228) /gene="engB" /locus_tag="AGROH133_03599" /note="G5 box; other site" /db_xref="CDD:133278" gene complement(371813..373615) /gene="yidC" /locus_tag="AGROH133_03600" /db_xref="GeneID:10266128" CDS complement(371813..373615) /gene="yidC" /locus_tag="AGROH133_03600" /note="functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; Preprotein translocase subunit YidC" /codon_start=1 /transl_table=11 /product="inner membrane protein translocase component YidC" /protein_id="YP_004277681.1" /db_xref="GI:325291817" /db_xref="GeneID:10266128" /translation="MMEKNRNYFIAIALSVVIVLAWQFLYMNPRIEQQRRAEEARQAQ QQTTQQQPAPGAAPGVTADGAPPASSTQAAATATREEAIAKSQRVAIDTNAIAGSINL TGARFDDIRLKGYHETVDDSSPIITLFSPSDTKDGYFTELGYVGGADAGSVPGPATVW TLASGDKLTETTPVTLKYTNQNGVVFSRTVSIDQHYMITVNDKVENPGQAPVSFATYG RVTRNNKPAIPPVFVIHEGFLGVSGKDGSLTEEKYKDVEETPVTIAKATGGWLGITDK YWAAAIVPPQMTPFETRYSHIKGNQPSYQADFKSDTMTVEPGQSIELKSLVFAGAKEV PLVDRYETEYSIPKFDLLIDWGWFYFITKPMFKMMDFFFRYFGNFGVAILLTTIVVKA LFFPLASKQYASMANMKRMQPKMEELKAKHGDDRMAMQQAMMQLYKEEKINPVAGCWP MLLQIPVFFALYKVIYVTIEMRHAPFFGWIHDLSAPDPTSLFNLFGLLPYDVPHFLMI GVWPLVMGITMFLQMRMNPTPPDPTQAMIFTWMPLIFTFMLASFPAGLVIYWAWNNTL SISQQALIMKRHGAKIELFDNLKGLFKRKPVQSK" misc_feature complement(371843..373357) /gene="yidC" /locus_tag="AGROH133_03600" /note="membrane protein insertase; Provisional; Region: PRK01318" /db_xref="CDD:179279" misc_feature complement(371888..372484) /gene="yidC" /locus_tag="AGROH133_03600" /note="60Kd inner membrane protein; Region: 60KD_IMP; cl00489" /db_xref="CDD:193840" gene complement(373612..374031) /gene="rnpA" /locus_tag="AGROH133_03606" /db_xref="GeneID:10266129" CDS complement(373612..374031) /gene="rnpA" /locus_tag="AGROH133_03606" /EC_number="3.1.26.5" /note="protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; RNase P protein component" /codon_start=1 /transl_table=11 /product="ribonuclease P protein component" /protein_id="YP_004277682.1" /db_xref="GI:325291818" /db_xref="GeneID:10266129" /translation="MPSLWPDESRGHMSKTKKLPGRLKNRSDFLAVQTGEKRRGGTFL LEVLDRKTPETEPRVGFTVTKRQGNAVERNRMRRRLKEAVRLSAGFAMKPGHDYVIVA RRDVLETAFPKLQSLLTERIEGTAKPKRSQDTRSRKE" misc_feature complement(373615..373995) /gene="rnpA" /locus_tag="AGROH133_03606" /note="Ribonuclease P; Region: Ribonuclease_P; cl00457" /db_xref="CDD:193826" gene complement(374032..374169) /gene="rpmH" /locus_tag="AGROH133_03607" /db_xref="GeneID:10266130" CDS complement(374032..374169) /gene="rpmH" /locus_tag="AGROH133_03607" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L34" /protein_id="YP_004277683.1" /db_xref="GI:325291819" /db_xref="GeneID:10266130" /translation="MSKRTFQPSKLVRKRRHGFRARMATAGGRKVLAARRARGRASLS A" misc_feature complement(<374095..374166) /gene="rpmH" /locus_tag="AGROH133_03607" /note="Ribosomal protein L34; Region: Ribosomal_L34; cl00370" /db_xref="CDD:185948" gene complement(374264..374482) /locus_tag="AGROH133_03608" /db_xref="GeneID:10266131" CDS complement(374264..374482) /locus_tag="AGROH133_03608" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277684.1" /db_xref="GI:325291820" /db_xref="GeneID:10266131" /translation="MGSWHNFSHHNIYQCRLKKEFQNLPIVRSECARSARERSRFHGA SAKGEARKPLRQLTLLGLCPYKPRTLGH" gene 374518..376545 /gene="mcpA2" /locus_tag="AGROH133_03609" /db_xref="GeneID:10266132" CDS 374518..376545 /gene="mcpA2" /locus_tag="AGROH133_03609" /note="Bacterial chemotaxis sensory transducer, methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004277685.1" /db_xref="GI:325291821" /db_xref="GeneID:10266132" /translation="MRIRGRINLLVGLMSLVACTIGGLSIYAVSEFQVRTVGYEKAAE RAYKGEALNRLVTAVVMEARGVYAAPDIEKAAPFADGIVKNLDAMEKLIATWTPLVPA EQKAAFDNLSSRFKEFKAFRLETARLAREAGPQAANQQGNNDANRANRKAYQAEIDAV VKNDIAGLEAVKAGIDGFVTTTFWLVIIVTGSGILAGAAFGLYIGARQLSAPIRKVSE VMNAVADGNLDADVPYLGRTDEIGEMAAAVEVFKKNGREVRRMNAQETAMRAKSDDLQ AGMAVVVDAAAQGDFSRRINKDYGDENLNRFAATINALLTGVDNGVSETSRVIEGLAR GDLTEKMDGEFRGVFAELQTNVNETLAKLRETMREVRSSTEGISGNANELRSAADDLS KRTEQQAAALEETSAALDEITAVVRNSTDRAQEASTMVAETKQKTAESANVVRDAVSA MDRIEHASREISQIINVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQ RSATAAKDIKALITKSGEEVGRGVSLVQRTGSALGEIETRVLAINEHIHSIATAAREQ STGLHEVNTAINQMDQVTQRNAAMVEETSAATHKLSGEAGHLVTLVSRFKVGVEDGQI RSRAEQPMRPVAVSGRAAAVASPARKLMSSVSRALNAQPAAAVANGDWQEF" misc_feature 375076..375279 /gene="mcpA2" /locus_tag="AGROH133_03609" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 375622..376365 /gene="mcpA2" /locus_tag="AGROH133_03609" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 375766..376371 /gene="mcpA2" /locus_tag="AGROH133_03609" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 376801..378219 /locus_tag="AGROH133_03613" /db_xref="GeneID:10266133" CDS 376801..378219 /locus_tag="AGROH133_03613" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004277686.1" /db_xref="GI:325291822" /db_xref="GeneID:10266133" /translation="MPGLTGGLSGRLLLLTVIFVMIAEVLIFVPSVANMRLSWLRDRL NTAAAAGAVIDGLQAELPRSVQNDTLMATGAKLIALRKDGTSRLLAVAETPPGVDEQY DLSDVSQLAAVRDAFSTLLFGGNRVIRVFDVVGDSDTIIELVLGENKLRAAMLAYARN VFLISIVLSLVTAGLIFVSINRIMIRPIRRLTLGMQRFSEEPGNPERIFVPEEGSDEL SVAGRHLADMQTELQKTLRQQKNLVDLGLAVSKINHDMRNILSSAQLMSDRLVDAKDP MVRSFAPKLLRTIDRAVSYTTEVLAYGQATEGAPKRKTVQLSLLVRDVRDILALDPES GIEFHDSVPPDLTVDADAEQLFRVIHNLCRNAVQALQSDTANASPRHLSIAAQRAGNV VSIVIDDNGPGMPRKAKENLFSAFRGSARSGGTGLGLVIARELVLAHGGTIALVEKPG PGTQFRIEIADRAASVHAARTA" misc_feature 377251..378177 /locus_tag="AGROH133_03613" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature 377863..378177 /locus_tag="AGROH133_03613" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(377881..377883,377893..377895,377902..377904, 377989..377991,377995..377997,378001..378003, 378007..378012,378076..378087,378133..378135, 378139..378141,378154..378159,378163..378165) /locus_tag="AGROH133_03613" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 377893..377895 /locus_tag="AGROH133_03613" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(378001..378003,378007..378009,378076..378078, 378082..378084) /locus_tag="AGROH133_03613" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 378437..378513 /locus_tag="AGROH133_03616" /db_xref="GeneID:10266134" tRNA 378437..378513 /locus_tag="AGROH133_03616" /product="tRNA-Arg" /anticodon=(pos:378471..378473,aa:Arg) /db_xref="GeneID:10266134" gene 378688..379500 /gene="ubiE" /locus_tag="AGROH133_03617" /db_xref="GeneID:10266135" CDS 378688..379500 /gene="ubiE" /locus_tag="AGROH133_03617" /note="methyltransferase type 11; SAM-dependent methyltransferases" /codon_start=1 /transl_table=11 /product="ubiquinone/menaquinone biosynthesis methyltransferase" /protein_id="YP_004277687.1" /db_xref="GI:325291823" /db_xref="GeneID:10266135" /translation="MLETDKVFSGSIPENYDRYMVPLIFEPFARDLARRAAALTPINV LEIAAGTGVVTRELAPGLPPAANYVVTDLNQPMLDFAASRQVPDNRIRWRQADAQALP FENAAFDLVICQFGAMFFPDRPSAYREAKRVLKPGGHYLFNVWDRIEENHLANEVTNA LASLFPDDPPRFMVRTPHGYHDTTLIRGELESAGFSRVVIETIAAQSRASSPRIPAIA YCQGTVLRTEIEARAPGKLEAATDCAASAIEARYGSDEVVTKIQAHVILAAV" misc_feature 378814..379113 /gene="ubiE" /locus_tag="AGROH133_03617" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(378826..378846,378901..378906,378973..378981, 379027..379029) /gene="ubiE" /locus_tag="AGROH133_03617" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" misc_feature <378967..379293 /gene="ubiE" /locus_tag="AGROH133_03617" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 379718..380863 /locus_tag="AGROH133_03618" /db_xref="GeneID:10266136" CDS 379718..380863 /locus_tag="AGROH133_03618" /note="ABC transporter nucleotide-binding protein/ATPase; ABC-type sugar transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277688.1" /db_xref="GI:325291824" /db_xref="GeneID:10266136" /translation="MTPQSLELSGIGKGFGADDVLKEIDLSIRPGEFLSLVGMSGCGK STLLRIIAGLETPDRGSVTIGGQDVTEIDPSDRNLAMVFQSYALYPHMSVRQNIATPL RMRRLPLAARLPLIGRFAAPAETLRQIDAAVEQAAETLQIAHLLDRKPAQLSGGQRQR VALARALVRSPAAFLMDEPLSNLDAKLRAHMREELAGLHRRLGATFIYVTHDQIEAMT MSDRIALMSEGRIEQLGTPDELYRKPATLTVARFIGTPSINLLPVEIHAGGKVTAFGR DLGVEASGRDAGPATLGLRAEDLRPGAEGFAVRVTRSETHGADRFVNCRLLSDETVAI TLRQAAGEVLGADENGVMNLGFAPERVHLFAADGLRRKTTVREMVPA" misc_feature 379730..380830 /locus_tag="AGROH133_03618" /note="glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650" /db_xref="CDD:183258" misc_feature 379733..380422 /locus_tag="AGROH133_03618" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 379829..379852 /locus_tag="AGROH133_03618" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(379838..379843,379847..379855,379967..379969, 380246..380251,380348..380350) /locus_tag="AGROH133_03618" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 379958..379969 /locus_tag="AGROH133_03618" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 380174..380203 /locus_tag="AGROH133_03618" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 380234..380251 /locus_tag="AGROH133_03618" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 380258..380269 /locus_tag="AGROH133_03618" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 380336..380356 /locus_tag="AGROH133_03618" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene 380860..381786 /locus_tag="AGROH133_03619" /db_xref="GeneID:10266137" CDS 380860..381786 /locus_tag="AGROH133_03619" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type sugar transport systems, permease components" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004277689.1" /db_xref="GI:325291825" /db_xref="GeneID:10266137" /translation="MTAVDFSSATGAKSRPRLSKADRRMIWRGLMFAAPASLLLLAIY IVPIFVLAGFSVTDYKLGALSTRFVGLDNFVKAFHDPVFLRALANTAIYAVIVIPFGV FLALGVALLVYNRKRSRAFWEVAYFLPVTATLVAMATVWQFLLHPSLGPVNAAIKWFG FEPVAFLSNPVLLIPTMALMGVWQVLGFNMVLFLAGLTAISKDLHEASRLDGAKNPID RFLTVTWPMLGPTTMFVVVTTSISAFKVFETVAVLTKGRFGSETLLFDLYLEGFEYSN TGYAAALTVIFLAIVLILSIGQTLHMDRKVHY" misc_feature 380914..381774 /locus_tag="AGROH133_03619" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" misc_feature 380926..381750 /locus_tag="AGROH133_03619" /note="ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177" /db_xref="CDD:31370" gene 381786..382607 /locus_tag="AGROH133_03626" /db_xref="GeneID:10266138" CDS 381786..382607 /locus_tag="AGROH133_03626" /note="ABC transporter transmembrane protein; ABC-type sugar transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004277690.1" /db_xref="GI:325291826" /db_xref="GeneID:10266138" /translation="MAALRKYFPHLVLALGAFVMLLPFYWMMLTSIRSPAEIFDVSLW PIPAKFDAVENYTRAASQVPMARFMLNGVIVCVGILVVQVLTSVPAAYALAKLRFPGR KLLLGLIIAALCVPIQALALPLFVGLAKTELLNTYFAMMMPFFLSVFAIFLFNQSFRS YPDEIIEAARMDGFSEMEICWGLVLRGSLPSLAAFSIFSLVAHWNDLYWPMIVVSDTN LAPPPLGMMLFADVESGANYGALMAGATLITAPMVLCFLLARRHFIAGITMTGVK" misc_feature 381795..382604 /locus_tag="AGROH133_03626" /note="ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395" /db_xref="CDD:30744" misc_feature 382044..382544 /locus_tag="AGROH133_03626" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(382050..382055,382068..382070,382098..382109, 382113..382142,382149..382154,382158..382160, 382215..382220,382224..382226,382230..382232, 382239..382244,382248..382250,382260..382265, 382272..382274,382323..382325,382365..382370, 382377..382379,382398..382409,382416..382421, 382461..382466,382494..382499,382506..382511, 382515..382520,382527..382532,382539..382544) /locus_tag="AGROH133_03626" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(382116..382160,382398..382415) /locus_tag="AGROH133_03626" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(382158..382160,382416..382418,382455..382457, 382464..382466,382494..382496) /locus_tag="AGROH133_03626" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(382275..382313,382329..382334,382344..382346) /locus_tag="AGROH133_03626" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 382650..383942 /locus_tag="AGROH133_03633" /db_xref="GeneID:10266139" CDS 382650..383942 /locus_tag="AGROH133_03633" /note="ABC transporter substrate-binding protein (sugar); ABC-type sugar transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="super ABC transporter substrate-binding protein" /protein_id="YP_004277691.1" /db_xref="GI:325291827" /db_xref="GeneID:10266139" /translation="MKINRRALMGGLALGVAFAGLATPVLANEITLNVLYNLPGFTKF HQPLADEFMKKNPDVKINFLAPAAGYNEGQQQVLRSAVTGNLPDVYFSGYNLTAELVH TLAPRNQITDLSPFIQAEGGQAFLDKNYSPKMAALGQIDGKQYGLPVNASSPIIYINS DLVTKAGGDPDKMPTTFPELIALAKKIKALDPKFAGMSYDINGWPDDWLWQALVFEQG GKLVDEKTKTVAFDNEIGLNALKMTRQFVTEGGQNLLDWDQSRQQFGAGLTGFIFSTP AHVQTITGLVGDRFKLKTATFPLDNKEKGGVPTGGNSAVILTQEKAKQDAAWKYLKWI TGPEAQNTIVRITGYLPTNKLATGADFLAPYYAENPNVKTASLQADRSLPWAGYPGGD SVRIWRTQRDIIGTVMRGEVSPEAGLKQIVEQTNALLK" misc_feature 382728..383939 /locus_tag="AGROH133_03633" /note="ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653" /db_xref="CDD:31839" misc_feature 382791..383939 /locus_tag="AGROH133_03633" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 384009..384809 /locus_tag="AGROH133_03636" /db_xref="GeneID:10266140" CDS 384009..384809 /locus_tag="AGROH133_03636" /note="Metallophosphoesterase; Predicted phosphohydrolases" /codon_start=1 /transl_table=11 /product="3',5'-cyclic-nucleotide phosphodiesterase" /protein_id="YP_004277692.1" /db_xref="GI:325291828" /db_xref="GeneID:10266140" /translation="MKIIQITDTHLLPPGIAINGVDPEKQLRAAISDIVEKHADADLL VMTGDLCNYGEPEAYELLRDILASVSLPVRLMLGNHDRRPEFVAAFPEQPRDENGYIQ SFIDTEFGRLLFLDSHEADVIGGMYGADRLTWLDKALEGAGDHPVTVFVHHPPMDCGI RHFENIGMHDDGAVMQRLGRHPAGVRHIVFGHIHVPMAGTSAEGIAYSSGQACAHRFI TDIEVVDPLWTGGNPCYRVISLGTFGLRAYDVEVGQAVLGQASACEGP" misc_feature 384009..384596 /locus_tag="AGROH133_03636" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature 384012..384659 /locus_tag="AGROH133_03636" /note="Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain; Region: MPP_GpdQ; cd07402" /db_xref="CDD:163645" misc_feature order(384030..384032,384036..384038,384153..384155, 384162..384164,384243..384248,384462..384464, 384582..384584,384588..384590,384651..384653) /locus_tag="AGROH133_03636" /note="active site" /db_xref="CDD:163645" misc_feature order(384030..384032,384036..384038,384153..384155, 384243..384245,384462..384464,384582..384584, 384588..384590) /locus_tag="AGROH133_03636" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163645" misc_feature order(384072..384074,384081..384083,384090..384095, 384102..384107,384162..384164,384171..384173, 384198..384200,384474..384476,384480..384485, 384567..384569,384573..384575,384594..384605, 384609..384611,384618..384626,384630..384632) /locus_tag="AGROH133_03636" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:163645" gene 385078..386574 /locus_tag="AGROH133_03637" /db_xref="GeneID:10266141" CDS 385078..386574 /locus_tag="AGROH133_03637" /EC_number="3.1.2.1" /note="Acetyl-CoA hydrolase/transferase N-terminal domain, coenzyme A transferase" /codon_start=1 /transl_table=11 /product="Acetyl-CoA hydrolase" /protein_id="YP_004277693.1" /db_xref="GI:325291829" /db_xref="GeneID:10266141" /translation="MLEKRIRNASLLNRIVSAEEAAGLIQDGMTVGMSGFTRAGEAKA VPLALAERAKTHPMKITLMTGASLGNDLDKTMVEAGMLARRMPFQSDPALRKAINDGK VMFIDQHLSETVEQLRGGQIHGVDVAIIEAVAITADGGIVPTTSVGNSASFAILAEKV IVEINLSQPDVLEGLHDIFIPAKRPTRMPIPVVATDSRVGLPFIPVPPEKIAAIVLSD KSDSFSTVLPPDVETKAIAGHLTEFLLNEVRHGRMTHELQPLQAGIGTIANAVMHGFI DTPFHDLKMYSEVLQDSTFELFDAGKLTFASGSSITLSSAMNERVMPRLADYKSRLIL RPQEVSNHPEVIRRLGIIGINTALEFDIYGNVNSTHVGGTHMMNGIGGSGDFARNAYM SIFVTKSIAKGGAISSVVPMVSHVDHTEHDVDILVTEIGLADLRGLAPRERAAVIIAN CVHPHYRDALTDYFQRAVARGGHTPHLIEEALSWHNALRERGTMLPQR" misc_feature 385096..385722 /locus_tag="AGROH133_03637" /note="Acetyl-CoA hydrolase/transferase N-terminal domain; Region: AcetylCoA_hydro; pfam02550" /db_xref="CDD:111448" misc_feature 385117..386556 /locus_tag="AGROH133_03637" /note="succinate CoA transferases; Region: YgfH_subfam; TIGR03458" /db_xref="CDD:163273" misc_feature <386122..386379 /locus_tag="AGROH133_03637" /note="Coenzyme A transferase; Region: CoA_trans; cl00773" /db_xref="CDD:189128" gene 386764..388086 /locus_tag="AGROH133_03638" /db_xref="GeneID:10266142" CDS 386764..388086 /locus_tag="AGROH133_03638" /note="Alpha/beta hydrolase of unknown function (DUF900); Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277694.1" /db_xref="GI:325291830" /db_xref="GeneID:10266142" /translation="MPIRFVAIIAIVALLAGCGGRPIGVMTPTGQTVAGTTPVNLLVA TTRAPSDNAAVLFGGERGTGLKVDAVTISIPPKANRKVGQVQWPKKLPPNPLKDFTTV AVEPVRSEAETKSWISKHIHKDRRVLVFVHGFNNRYEESVYRFAQIVYDSGSDVVPVV FTWPSRASIFDYNYDKESTNYSRDALEEMLTRLAKDKSIGEVTVMAHSMGTWLAVEAL RQMAIRNGRVDPKISNVILAAPDLDVDVFSRQFASFGKAPPKFTLFVSQDDRALSLSR RISGNVDRLGQIDPSVEPYRSQLEKAGITVLDLTKLQSGDRLNHGKFAESPEVVRLIG DRLIAGQTVTDSDVGLGEALGAVSIGAAQTVGTAASVVVSAPIAVFDPRTRENYGRQV ERLGRSVENTVGSVGDTAGSVVDDQAVQSSRVNCDAAANRNRAECRNR" misc_feature 386812..387924 /locus_tag="AGROH133_03638" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4782" /db_xref="CDD:34393" misc_feature 387088..387771 /locus_tag="AGROH133_03638" /note="Alpha/beta hydrolase of unknown function (DUF900); Region: DUF900; pfam05990" /db_xref="CDD:147899" gene 388215..389252 /locus_tag="AGROH133_03640" /db_xref="GeneID:10266143" CDS 388215..389252 /locus_tag="AGROH133_03640" /EC_number="5.1.1.4" /note="Proline racemase" /codon_start=1 /transl_table=11 /product="proline racemase protein" /protein_id="YP_004277695.1" /db_xref="GI:325291831" /db_xref="GeneID:10266143" /translation="MRWKRTLQLLDVHCEGEIGRVVTGGAPKIPGNTVAEQLNWMNTD PKGEALRRFLTLEPRGTPMGSVNLLLPPKHPDAHTAFVILQPDQAHASSGSNSICATT ALLESGMVEMQEPETVVILETAAGLVKATATCRDGRCEKVKLTMVPSFVHELDVTIDT PEWGKVTMDISYGGIFYALVDVRQIGLTIEKANAAKLVAAGMILKDLVNSEITVVHPE IPAISGVAYVMFRDVDADGSIRTCTTMWPGRADRSPCGTGNSANLATLYARGKVKVGD EYKSRSIIGSEFDVGLSAVTEVAGRPAVIPTIAGRGFTFGLHQVGLDPFDPFADGFAM TDVWGPEAGGI" misc_feature 388224..389210 /locus_tag="AGROH133_03640" /note="hydroxyproline-2-epimerase; Provisional; Region: PRK13971" /db_xref="CDD:184428" misc_feature 388239..389213 /locus_tag="AGROH133_03640" /note="Proline racemase; Region: Pro_racemase; pfam05544" /db_xref="CDD:191301" gene 389366..390403 /gene="pyrC" /locus_tag="AGROH133_03641" /db_xref="GeneID:10266144" CDS 389366..390403 /gene="pyrC" /locus_tag="AGROH133_03641" /EC_number="3.5.2.3" /note="catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; Dihydroorotase" /codon_start=1 /transl_table=11 /product="dihydroorotase, homodimeric type" /protein_id="YP_004277696.1" /db_xref="GI:325291832" /db_xref="GeneID:10266144" /translation="MKSLTLRRPDDWHLHLRDGAMLEGVIGDTSRHFARAIIMPNLVP PVVTCADARAYRERIVKAIPAGDRFEPLMTLYLTEDTQADDVEEGKKSGLITAVKLYP AGATTNSHGGVRDFNKAMPVLERMAKIGLPLCVHGEVTTPEVDIFDREKAFIDTVLEP LRQRLPELKVTMEHITTRDGVDYIKSSKANLAGSITTHHLIINRNAILVGGIKPHYYC LPVAKREEHRLALRAAAISGDARFFLGTDSAPHVDPLKECACGCAGIYTSINTMSCLA HVFEQENALDKLEAFASLNGPAWYGLAPNEETITLVKRDEPVSFPAKIETGAGPVTVF DPMFPLHWDVS" misc_feature 389366..390400 /gene="pyrC" /locus_tag="AGROH133_03641" /note="Dihydroorotase [Nucleotide transport and metabolism]; Region: PyrC; COG0418" /db_xref="CDD:30767" misc_feature 389375..390391 /gene="pyrC" /locus_tag="AGROH133_03641" /note="Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is...; Region: DHOase; cd01294" /db_xref="CDD:73253" misc_feature order(389402..389404,389408..389410,389660..389662, 389771..389773,389885..389887,390104..390106) /gene="pyrC" /locus_tag="AGROH133_03641" /note="active site" /db_xref="CDD:73253" misc_feature order(389414..389416,390017..390022,390110..390112, 390116..390118,390152..390157) /gene="pyrC" /locus_tag="AGROH133_03641" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:73253" misc_feature order(389801..389812,389975..389980,390014..390016, 390035..390037,390140..390148) /gene="pyrC" /locus_tag="AGROH133_03641" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73253" gene 390470..391168 /gene="pyrE" /locus_tag="AGROH133_03642" /db_xref="GeneID:10266145" CDS 390470..391168 /gene="pyrE" /locus_tag="AGROH133_03642" /EC_number="2.4.2.10" /note="involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate" /codon_start=1 /transl_table=11 /product="Orotate phosphoribosyltransferase" /protein_id="YP_004277697.1" /db_xref="GI:325291833" /db_xref="GeneID:10266145" /translation="MNHFTFTDRTVVAELVAKMLWEIKAVHFNSESPYTFASGMKSPV YIDMRKLISFPRIRSAAMDFAAAAVMREAGFEKFDCVAGGETAGIPFAAFLAERLGLP MIYCRKKPKGHGRNAQIEGHMPEGARVLVIEDLTTAGGSMFTFIDAIRAAGGIVDHGI ALFYYGIFEQAEARFANGNVKLHYLTTWRDVLAVARAEKLFDEKTLSEVEAFLDNPLP WSAKRGGVSELPQS" misc_feature 390506..391117 /gene="pyrE" /locus_tag="AGROH133_03642" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 391266..392192 /gene="scrK" /locus_tag="AGROH133_03643" /db_xref="GeneID:10266146" CDS 391266..392192 /gene="scrK" /locus_tag="AGROH133_03643" /EC_number="2.7.1.4" /note="Carbohydrate/purine kinase; Sugar kinases, ribokinase family" /codon_start=1 /transl_table=11 /product="fructokinase" /protein_id="YP_004277698.1" /db_xref="GI:325291834" /db_xref="GeneID:10266146" /translation="MILCCGEALIDMLPRQTTLGEAGFAPYAGGAVFNTAIALGRLGV PSAFFTGLSDDMMGDILRTTLRASNVDFSYCATLSRPTTIAFVKLVDGHATYAFYDEN TAGRMITEAELPALGADCEALHFGAISLIPEPCGSTYEALMVREHQSRVISLDPNIRP GFIKDKQSHMARIRRMAAMSDIVKFSDEDLEWFGLEGDEDTLARHWLHHGAKLVVVTR GAKGAVGYTANFKVEVASERVEVVDTVGAGDTFDAGILASLKMQGLLTKAQVASLTEE QIRKALALGAKAAAVTVSRAGANPPFAHEIGL" misc_feature 391266..392159 /gene="scrK" /locus_tag="AGROH133_03643" /note="Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into...; Region: bac_FRK; cd01167" /db_xref="CDD:29351" misc_feature order(391365..391367,392001..392003,392010..392012) /gene="scrK" /locus_tag="AGROH133_03643" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:29351" misc_feature order(391821..391823,391914..391916,391995..391997, 392004..392009,392016..392018) /gene="scrK" /locus_tag="AGROH133_03643" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:29351" gene 392317..393282 /locus_tag="AGROH133_03644" /db_xref="GeneID:10266147" CDS 392317..393282 /locus_tag="AGROH133_03644" /EC_number="3.1.1.72" /note="Acetyl esterase (deacetylase)" /codon_start=1 /transl_table=11 /product="Acetyl xylan esterase" /protein_id="YP_004277699.1" /db_xref="GI:325291835" /db_xref="GeneID:10266147" /translation="MSVPTTHPFDFDPTYGMRREQLQAIIPPEAPPGFDDFWKKRYRR ALATDPRPVLRKSKLSHPRWHVLDISYTSTGGFRIGGWMLLPRKGQVRRGLVVGHGYG GRGEPDFDVPVEETAVLFPCFRGLSLSACPPISSDPARHVLYNIERKDDYIIGGCVDD LWIAVSTLVTLYPWLEGQVGYSGISFGGGIGALAIPYDARIDRGHLVVPTFGHRPFWL MLPTVGSADAVQTYQKTHANVLEMLRLFDAASAASRIKVPMLVAPALFDPAVAPPCQF AVANALPFSKFNEIFILDAGHFEYADSASQDAVHRDKVRQFFKVP" misc_feature 392350..393273 /locus_tag="AGROH133_03644" /note="Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3458" /db_xref="CDD:33261" gene 393279..394007 /locus_tag="AGROH133_03645" /db_xref="GeneID:10266148" CDS 393279..394007 /locus_tag="AGROH133_03645" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277700.1" /db_xref="GI:325291836" /db_xref="GeneID:10266148" /translation="MKREYLRWYSQRLHRDMELLIFGHSGAKVLMFPTRDGRFFEYEE LGLVDSMADKVEAGHLQLYCIEGLAKETFYAAHNHPSERIRRHAAFEDYILNEVLPLM AKKNPHGDTIVQGCSLGAFQAASLVFRHPHLFRKLVAFSGRYDLTMKVESFGDLFDGY YDDDVYFHMPSHFLPDLACGWRLENLRRIDMVFTIGDADPFLDNNHHLSRILNDKQIG HQLHVWEGRAHRAGPWRKMAALYI" misc_feature 393279..394004 /locus_tag="AGROH133_03645" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(394024..394893) /gene="argF1" /locus_tag="AGROH133_03646" /db_xref="GeneID:10266149" CDS complement(394024..394893) /gene="argF1" /locus_tag="AGROH133_03646" /EC_number="2.1.3.3" /note="catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation" /codon_start=1 /transl_table=11 /product="Ornithine carbamoyltransferase" /protein_id="YP_004277701.1" /db_xref="GI:325291837" /db_xref="GeneID:10266149" /translation="MALRQGKDFLAFHDLPEDAVLSIIDRAGSLAQDWSKGTMPQLLK GKRIGLIVDDTGWRNTAAFDLGIQAMGGICVTVPISFNGREEIADLAGYLDNWFDLVI IRTKELSTLRVLAGEMRASVINARTKSNHPCETLGDLAHIKSLRSRVDGLKIVGVAPD ANILRSWVEASISLPIQVTQVYPEQWHVTDAALINPNFRASSDMAELLDADVVITDSW PTGSDHILIDYRISASLLDRMQPEVIFLPCPPVARGQEVTADAMTHPACQSRPAKAFL LHAQNALMEFLLA" misc_feature complement(394030..394881) /gene="argF1" /locus_tag="AGROH133_03646" /note="Ornithine carbamoyltransferase [Amino acid transport and metabolism]; Region: ArgF; COG0078" /db_xref="CDD:30427" misc_feature complement(394465..394875) /gene="argF1" /locus_tag="AGROH133_03646" /note="Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729" /db_xref="CDD:190401" misc_feature complement(394033..394446) /gene="argF1" /locus_tag="AGROH133_03646" /note="Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185" /db_xref="CDD:189438" gene complement(394984..396609) /gene="pgi" /locus_tag="AGROH133_03647" /db_xref="GeneID:10266150" CDS complement(394984..396609) /gene="pgi" /locus_tag="AGROH133_03647" /EC_number="5.3.1.9" /note="functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family" /codon_start=1 /transl_table=11 /product="Glucose-6-phosphate isomerase" /protein_id="YP_004277702.1" /db_xref="GI:325291838" /db_xref="GeneID:10266150" /translation="MQATIEKLKATASSTAATDLRAAFAADDKRFSRFSAKFDDLLMD YSKCAINDEIVTLLEQLARDGGVEAKREKMFSGKAINFTEDRAVLHTALRNRSNTPVL VDGKDVMPDVNAVLTAMGKFADAIRSGSLKGATGKKITDIINIGIGGSDLGPVMATLA LAPFHDGPRAHFVSNIDGAHIADTLKLVDPETSLFIVASKTFTTIETMTNAATARRFI AEKLGEEAVKHHFAAVSTALEKVAAFGIESDRIFGFWDWVGGRYSIWSAIGLPLMIAI GPENFGKFLDGAHAMDKHFREAPIRENLPMLLGLIGFYHRNVLNYSTRAILPYDQRLS RFPAYLQQLDMESNGKGVTIDGTPVEGQSGPVVWGEPGTNGQHAFYQLIHQGTSVIPA EFMIAANGFEPELRHQHQLLIANCLAQSEALMKGRTLAEAKAQLTSKGMEDSQADFIA PHRVFTGNRPSITFVYDKLTPFALGRLIALYEHRVFVEGVLFRINSFDQWGVELGKEL ATGLLPVVEGKESAAGHDSSTQGLVKVLSGLAG" misc_feature complement(394987..396525) /gene="pgi" /locus_tag="AGROH133_03647" /note="glucose-6-phosphate isomerase; Reviewed; Region: pgi; PRK00179" /db_xref="CDD:178917" misc_feature complement(395785..396273) /gene="pgi" /locus_tag="AGROH133_03647" /note="Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015" /db_xref="CDD:88410" misc_feature complement(order(395830..395832,395998..396000, 396007..396015,396160..396165,396169..396171)) /gene="pgi" /locus_tag="AGROH133_03647" /note="active site" /db_xref="CDD:88410" misc_feature complement(order(395971..395973,395980..395982, 395992..395994,396079..396090)) /gene="pgi" /locus_tag="AGROH133_03647" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88410" misc_feature complement(395074..395646) /gene="pgi" /locus_tag="AGROH133_03647" /note="Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016" /db_xref="CDD:88411" misc_feature complement(order(395347..395349,395356..395358, 395380..395382,395386..395388,395455..395457, 395464..395469,395476..395481,395488..395496, 395500..395502,395560..395565,395572..395574, 395584..395586,395620..395622,395644..395646)) /gene="pgi" /locus_tag="AGROH133_03647" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88411" misc_feature complement(order(395572..395574,395584..395586)) /gene="pgi" /locus_tag="AGROH133_03647" /note="active site" /db_xref="CDD:88411" gene complement(396737..398449) /gene="fadD" /locus_tag="AGROH133_03649" /db_xref="GeneID:10266151" CDS complement(396737..398449) /gene="fadD" /locus_tag="AGROH133_03649" /EC_number="6.2.1.3" /note="activates fatty acids by binding to coenzyme A; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II" /codon_start=1 /transl_table=11 /product="acyl-CoA synthase" /protein_id="YP_004277703.1" /db_xref="GI:325291839" /db_xref="GeneID:10266151" /translation="MSELSLGHPENVSAEKRWLASYPPGVPSEIPASANTSLVELLEK SCAKFADRKAFSSMGKSLTYRGLDIETRAVAAWLQSRGLEKGDRVAVMMPNILQNPVA VYGILRAGMIVVNVNPLYTPRELEHQLKDSGSKALFVLENFAHVAQQAVPKTAVRHVV VAAMGDLLGLKGHIVNLVVRKVKKLVPAYAIPGSISFKAVLKEGQGFSLKAVRLLPQD IAFLQYTGGTTGISKGAILTHANLLANKAQISLWLDAAFTQRKDRPEVLNFICALPLC HIFALTVNSLMGIALGGHNLLIANPRDIPGFVKELSHYRPHIFPGINTLFNALMNNED FRKLDLSSLILVLGGGMAVQRPVAERWLSMVGCPIAEGYGLSETSPVATVNRLDATEF SGTIGLPISSTEIDIRDEEGKSLPTGEVGEICIRGPQVMAGYWQRPDETAKAMTEDGF FRSGDMGFMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVAASHPGVLECAAIGVPDE HSGETVKLFVVKKDQSLTEAELKAFCAKSLTNYKRPKIIEFRTELPKSNVGKILRREL RNLN" misc_feature complement(396740..398407) /gene="fadD" /locus_tag="AGROH133_03649" /note="Long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07059" /db_xref="CDD:180816" misc_feature complement(396749..398263) /gene="fadD" /locus_tag="AGROH133_03649" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 398803..399852 /gene="fbpA1" /locus_tag="AGROH133_03650" /db_xref="GeneID:10266152" CDS 398803..399852 /gene="fbpA1" /locus_tag="AGROH133_03650" /note="ABC transporter nucleotide-binding protein/ATPase; ABC-type spermidine/putrescine transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="iron ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277704.1" /db_xref="GI:325291840" /db_xref="GeneID:10266152" /translation="MAGNAALELKSVGKRFGDTDVLSDIDLTVERGEIICLVGRSGCG KSTLLRIIAGVETPDHGSVCVNGAVVAGPAGFVEPEKRNIGFVFQDYALFPHLTVEQN VMFGLRSLPKAEARRRAAEMIEHVHLQELAKRYPHTLSGGEQQRVALARALAPQPGLL LMDEPFSNLDRGLRDTVREETLGVLRQLGTTAIMVTHDPEEALSAGDRVVLMQRGRIV QSGTGYEIHDHPKSRYAADFFCAFNKIEGRVREGRVETPLGPLGDASGLAEGLAATAY VRPNAISIIEDSAAKDGIAGEISSRVFLGEIEQLGIAVPGLPADLRVRTMQRTPAKTK AVRFGIDPKGVLIFT" misc_feature 398806..399846 /gene="fbpA1" /locus_tag="AGROH133_03650" /note="ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842" /db_xref="CDD:33633" misc_feature 398821..399465 /gene="fbpA1" /locus_tag="AGROH133_03650" /note="ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family...; Region: ABC_Carb_Solutes_like; cd03259" /db_xref="CDD:73018" misc_feature 398917..398940 /gene="fbpA1" /locus_tag="AGROH133_03650" /note="Walker A/P-loop; other site" /db_xref="CDD:73018" misc_feature order(398926..398931,398935..398943,399067..399069, 399289..399294,399391..399393) /gene="fbpA1" /locus_tag="AGROH133_03650" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73018" misc_feature 399058..399069 /gene="fbpA1" /locus_tag="AGROH133_03650" /note="Q-loop/lid; other site" /db_xref="CDD:73018" misc_feature 399217..399246 /gene="fbpA1" /locus_tag="AGROH133_03650" /note="ABC transporter signature motif; other site" /db_xref="CDD:73018" misc_feature 399277..399294 /gene="fbpA1" /locus_tag="AGROH133_03650" /note="Walker B; other site" /db_xref="CDD:73018" misc_feature 399301..399312 /gene="fbpA1" /locus_tag="AGROH133_03650" /note="D-loop; other site" /db_xref="CDD:73018" misc_feature 399379..399399 /gene="fbpA1" /locus_tag="AGROH133_03650" /note="H-loop/switch region; other site" /db_xref="CDD:73018" gene 400007..401023 /gene="fbpA2" /locus_tag="AGROH133_03651" /db_xref="GeneID:10266153" CDS 400007..401023 /gene="fbpA2" /locus_tag="AGROH133_03651" /note="Bacterial extracellular solute-binding protein, family 1; ABC-type Fe3+ transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="iron ABC transporter substrate-binding protein" /protein_id="YP_004277705.1" /db_xref="GI:325291841" /db_xref="GeneID:10266153" /translation="MTKFAKLALLASTVTFAAGSVSAAELNIYTTREPALIQPLLESF TASSGVKVNTVFLKDGLAERVLSEGASSPADVLMTVDAGNLVDLAEKGVTQPVESETL NKAIPAELRDAKGHWFALSMRARVLYAAKDLDLASFNYEDLADAKWKGKICIRAGQHP YNTALFADYIAHYGAADTEKWLAGVKENLARKAGGGDRDVAKDILGGICDIGIANSYY VGLMRSGKGGEEQVKWGDAIKVVLPTFKNGGTQVNISGAAVAKNAPNKAEAVKLLEYL VSDEAQKIYAEANFEYPVRQGAALNDIVASFGTLKVDNKSLTEIVSHRRQASELVDKV GFDQ" misc_feature 400007..400960 /gene="fbpA2" /locus_tag="AGROH133_03651" /note="ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]; Region: TbpA; COG4143" /db_xref="CDD:33896" misc_feature 400124..401017 /gene="fbpA2" /locus_tag="AGROH133_03651" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 401097..402773 /gene="fbpA3" /locus_tag="AGROH133_03653" /db_xref="GeneID:10266154" CDS 401097..402773 /gene="fbpA3" /locus_tag="AGROH133_03653" /note="ABC transporter transmembrane protein (iron); ABC-type Fe3+ transport system, permease component" /codon_start=1 /transl_table=11 /product="iron ABC transporter transmembrane protein" /protein_id="YP_004277706.1" /db_xref="GI:325291842" /db_xref="GeneID:10266154" /translation="MNPDAVQPLMPRARPRFSSSFWWLSLSLAAVCGAMLPVLALVSQ AVQGSDGLWSHLGSSVILTALPDTAVLMLGVGLLAGVIGTFAAWLVTAYDFPGRKILE WALLLPLAMPTYIVAYAYLDILHPIGPVQGAIRWLLGYSSPREFRLPDIRSMTGCIIL LGFVLFPYVYIPVRAMFLTQAGNLLEAARTLGVSRRAAFFKVAVPLARPAVAVGISLA LMEALNDIGASEFLGVRTLTVSVYTTWVTKSDLPGAAQIALSMLFIVVALVAFERWAR RKQRYTVSAQKSRELEPVRLTGLKACGAFALGSLPVLIGFVAPASYLVTEAWKRFRFS GLSSRFADEALNTILFAGLATAITLVLGLAVAYAMRLAPGRFSLWSYRLSTVGYAAPG TVIAIGVLIALGGFDRFVDQTMRDWFGISTGLIFIGSGAALIYAYSARFLTIAAGGVD AGLSRIPQSFDHASRTLGRSATQTFRQIHLPLSKASLAAAALLIFVDCVKELPATLLL RPLNFETFATHLYGEAARGTYEEASIAALAIVVIGILPVMQLARIGRRKS" misc_feature 401184..402689 /gene="fbpA3" /locus_tag="AGROH133_03653" /note="ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178" /db_xref="CDD:31371" misc_feature 401346..401903 /gene="fbpA3" /locus_tag="AGROH133_03653" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(401349..401354,401367..401369,401397..401408, 401412..401441,401448..401453,401457..401459, 401583..401588,401592..401594,401598..401600, 401607..401612,401616..401618,401628..401633, 401640..401642,401691..401693,401733..401738, 401745..401747,401766..401777,401784..401789, 401823..401828,401856..401861,401868..401873, 401877..401882,401889..401894,401901..401903) /gene="fbpA3" /locus_tag="AGROH133_03653" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(401415..401459,401766..401783) /gene="fbpA3" /locus_tag="AGROH133_03653" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(401457..401459,401568..401570,401784..401786, 401817..401819,401826..401828,401856..401858) /gene="fbpA3" /locus_tag="AGROH133_03653" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(401643..401681,401697..401702,401712..401714) /gene="fbpA3" /locus_tag="AGROH133_03653" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" misc_feature 402102..402689 /gene="fbpA3" /locus_tag="AGROH133_03653" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 402946..405135 /gene="fegA" /locus_tag="AGROH133_03666" /db_xref="GeneID:10266155" CDS 402946..405135 /gene="fegA" /locus_tag="AGROH133_03666" /note="TonB-dependent siderophore receptor; Outer membrane receptor proteins, mostly Fe transport" /codon_start=1 /transl_table=11 /product="ferrichrome receptor precursor protein" /protein_id="YP_004277707.1" /db_xref="GI:325291843" /db_xref="GeneID:10266155" /translation="MKNLHEMFLGRLALGTAAIVLMAPLVGHAQQTTVLREITVEGQG AENATGPVRGYVAKKSATGSKTETETKDIPQSVSVVGRKEMDDRGVVTKIDEVLRYTP GVTAEPFGTDPDTDWFYIRGFQATQTGVFLDGLNLFSYGFGGFQMDAYGLERVEVLKG PASVLYGGANPGGIVQMVRKRPQDEPVRETEIGINNFGNAFFGFDLGDKVDGEGVWKY RVTGKVSGGDNYTDYSEDLRGFIMPQITFEPDAQTSATLYGYFSALDQVHVGNGFLPY VGTVVDAPFGKLDRKAFYGEPDIDNGRVYQSMVGYEVSHEFDNGWKISQNARYGHLYK HETGPYAGGWANTDANGQPILDATTNDYMLTRFGYDGLSKVDSFGVDNRVEGQFDTGA VSHSLLFGLDYKYYKLDQVQACCGSNAIGALNPVYGSTQGTNFVYANNVVTQQQIGIY AQDQLRFGDGWLVTLNGRYDYVATELNNRLPAGVSRRSNDDALSGRAGLAYEFDNGLT PYVSAATFFNPLIDTLADGSSAVPEEGHQFEAGIKYEPTFFDGSITASVFKLVKDNAI VSYTAGGVTTSGQFGQVESTGFELEAKANLTDNWKTIASYSYTDLDITKDANPNLIGK SPWIVPAHTASLWVDYAFTDDTFEGLSIGGGVRYQGKSWADAANTLRVPDAAVFDAAI RYEKNDWTASVNVANVFDKEYVKSCAGVSVCGWGDSRTITFKLSKKW" misc_feature 402946..405132 /gene="fegA" /locus_tag="AGROH133_03666" /note="ferrichrome receptor precursor protein; Provisional; Region: PRK14050" /db_xref="CDD:172542" misc_feature 403171..405132 /gene="fegA" /locus_tag="AGROH133_03666" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(403171..403200,403231..403260,403297..403314, 403333..403356,403390..403422,403456..403482) /gene="fegA" /locus_tag="AGROH133_03666" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(403945..403947,404062..404064) /gene="fegA" /locus_tag="AGROH133_03666" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene 405238..406119 /locus_tag="AGROH133_03669" /db_xref="GeneID:10266156" CDS 405238..406119 /locus_tag="AGROH133_03669" /note="Helix-turn-helix, AraC type; AraC-type DNA-binding domain-containing proteins" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004277708.1" /db_xref="GI:325291844" /db_xref="GeneID:10266156" /translation="MAFRVRMENEIEGFAVIGGPRSRVWNGIVADLWDVRCASKAGGR YVGKDPRFVFLLDMDGTNDGRFMMNRSRRDNYASSEANRISFVPADLDIHAELSNVSF VRHLDLHFDAGLLGARLVQGFDPHGLLDPHLMFEDERLLVLARLIAAECDNPDPLHDL YGESLVLALLTDFLKVKREPVKKRSKLASWQLRAATDYIREHCLRSIRLEELAELTNL SQSHFSHAFKASTGVPPHQWQMQARIDRVKDLMMRTDMALTDIAIAAGFSDQAHFSRV FRKMVGVSPSVWQKIRQ" misc_feature 405832..405951 /locus_tag="AGROH133_03669" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" misc_feature 405856..406095 /locus_tag="AGROH133_03669" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature 405997..406107 /locus_tag="AGROH133_03669" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 406248..406640 /locus_tag="AGROH133_03671" /db_xref="GeneID:10266157" CDS 406248..406640 /locus_tag="AGROH133_03671" /note="PRC-barrel domain; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277709.1" /db_xref="GI:325291845" /db_xref="GeneID:10266157" /translation="MLHQEPRAGQDPYVKDTPSLIASDKVEGTRVYGADGKHIGSIQR IILEKRGGRVAYAVLSFGGFFGIGDDYYPLPWEKLHYDEELDGYRIDLTKEQIENAPH FANLDDDDLLHARDRKVYDYYGVAPYWM" misc_feature 406308..406535 /locus_tag="AGROH133_03671" /note="Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to...; Region: PRCH; cl09959" /db_xref="CDD:164180" gene complement(406707..406949) /locus_tag="AGROH133_03672" /db_xref="GeneID:10266158" CDS complement(406707..406949) /locus_tag="AGROH133_03672" /note="Protein of unknown function DUF982" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277710.1" /db_xref="GI:325291846" /db_xref="GeneID:10266158" /translation="MKNERWTEPVEVNLEAKGKSVIAGPFEALMLLTEGWPKIRGLSF VRARSACRAALDGRKSPEEARKCFTDAVSEMQKNPH" misc_feature complement(406722..406931) /locus_tag="AGROH133_03672" /note="Protein of unknown function (DUF982); Region: DUF982; pfam06169" /db_xref="CDD:191465" gene complement(407069..407143) /locus_tag="AGROH133_03673" /db_xref="GeneID:10266159" CDS complement(407069..407143) /locus_tag="AGROH133_03673" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277711.1" /db_xref="GI:325291847" /db_xref="GeneID:10266159" /translation="MNQIIYIVGLVVIVLAILSFFGFR" gene complement(407277..407435) /locus_tag="AGROH133_03675" /db_xref="GeneID:10266160" CDS complement(407277..407435) /locus_tag="AGROH133_03675" /note="Protein of unknown function UPF0057" /codon_start=1 /transl_table=11 /product="stress induced protein" /protein_id="YP_004277712.1" /db_xref="GI:325291848" /db_xref="GeneID:10266160" /translation="MDVLRILIAIILPPVGVFLQVGLGLHFWLNILLTLCGYIPGIIH AIWVILRK" misc_feature complement(407283..407435) /locus_tag="AGROH133_03675" /note="Proteolipid membrane potential modulator; Region: Pmp3; cl00431" /db_xref="CDD:193816" gene complement(407603..407678) /locus_tag="AGROH133_03678" /db_xref="GeneID:10266161" tRNA complement(407603..407678) /locus_tag="AGROH133_03678" /product="tRNA-Thr" /db_xref="GeneID:10266161" gene complement(407816..408778) /locus_tag="AGROH133_03679" /db_xref="GeneID:10266162" CDS complement(407816..408778) /locus_tag="AGROH133_03679" /EC_number="1.13.12.16" /note="Aldolase-type TIM barrel; Dioxygenases related to 2-nitropropane dioxygenase" /codon_start=1 /transl_table=11 /product="2-nitropropane dioxygenase" /protein_id="YP_004277713.1" /db_xref="GI:325291849" /db_xref="GeneID:10266162" /translation="MLPSVLKDNLRLPVIASPLFIISHPQLTLAQCKAGVIGAFPALN ARPESQLDEWLAMITEELAAHNKANPERPAAPFAVNQIVHMSNRRLEHDLGLCVKYKV PVVISSLGAVPEVNAAVHSYGGIVLHDVINDRHARSAIRKGADGLIAVATGAGGHAGT LSPFALVQEIREWFDGPLLLAGAIANGGSILAAQAMGADMAYIGSPFIATQEARASDA YKQAIVEAQAKDIVYSNYFTGVHGNYLKSSIVASGMDPDNLPEADPSKMDFETATGGA KAWKDIWGAGQGIGAVKVVEPVADLVDRLVREYEAARQRICARG" misc_feature complement(407834..408778) /locus_tag="AGROH133_03679" /note="Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]; Region: COG2070" /db_xref="CDD:32253" misc_feature complement(408044..408751) /locus_tag="AGROH133_03679" /note="2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin...; Region: NPD_like; cd04730" /db_xref="CDD:73392" misc_feature complement(order(408164..408175,408230..408238, 408314..408319,408329..408331,408392..408394, 408455..408457,408533..408535,408722..408727)) /locus_tag="AGROH133_03679" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(408308..408313) /locus_tag="AGROH133_03679" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73392" misc_feature complement(408308..408310) /locus_tag="AGROH133_03679" /note="putative catalytic residue [active]" /db_xref="CDD:73392" gene 409033..410178 /locus_tag="AGROH133_03680" /db_xref="GeneID:10266163" CDS 409033..410178 /locus_tag="AGROH133_03680" /note="Helix-turn-helix, Fis-type" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277714.1" /db_xref="GI:325291850" /db_xref="GeneID:10266163" /translation="MSGLETAIRNALEKSDRSNAEVRARIYQSSRQALEAGLRKQGID DPQIVGQQRQRLESLIHVIENEERNRLLDRVEQQLRPPAPESAAHDGPSVDPVSQSQH HGDMAVEPELRGETRDVRPGAAAAPEPLSAGRRNGKPPRRGSSAGDASLAFRPEGAVG RRKRRGLFARLFMLVTLLAFVGFGAWWVYSSGLLLTPEQRDTSVPNPPAQVQAEDFNG TEPAPSLSAGRGFSDDWVEVFNAERGSSGVSAGPRANVENIATPAGKAIRVTSRSVSQ DGAISVEVPVEVMRDMAGKSSTISITLQSSSDRQTQVSVACDFATLGDCSRHRFTATA ERADMLLNTTFERSLAPNAPGKIFINSDIDGNARPVNLYSVRILPGQ" gene complement(410240..411121) /locus_tag="AGROH133_03682" /db_xref="GeneID:10266164" CDS complement(410240..411121) /locus_tag="AGROH133_03682" /note="Polyphosphate kinase 2; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277715.1" /db_xref="GI:325291851" /db_xref="GeneID:10266164" /translation="MGEETKKRSVEITIGGKLRSFDIDDPVLPDWVEEKKLSAGDFPY DKKMKREEYDATLEALQVELVKVQFWLQATGKRVMAVFEGRDAAGKGGAIFAAHAYLN PRYARVVALTKPTETERGQWYFQRYISHFPTAGEFVLFDRSWYNRAGVEPVMGFCTPE EHKRFLKETPRLEKMLVHEGVHLFKSWLDIGRETQIERFHDRRHSPLKCWKLSDMDIA ALTKWDDYTQKRDEMLEKTHTDVAPWTVVRANDKRRARVNLIRHILNTLDYDGKDKKA IGEIDDKILGSGPGFLK" misc_feature complement(410294..410983) /locus_tag="AGROH133_03682" /note="Polyphosphate kinase 2 (PPK2); Region: PPK2; cl11971" /db_xref="CDD:189242" gene 411353..412621 /gene="phoR" /locus_tag="AGROH133_03683" /db_xref="GeneID:10266165" CDS 411353..412621 /gene="phoR" /locus_tag="AGROH133_03683" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor histidine kinase PhoR" /protein_id="YP_004277716.1" /db_xref="GI:325291852" /db_xref="GeneID:10266165" /translation="MAVMKGESGLKLFAKKLGRNWLPVLVVSMLAVAAVSELQTPYMP AVLWLCAVIAILTARQKPEEPAKDETAAAEAEEPDVPGENVISGVRAGLAVLDTPVFI LDKNAGVLYQNGAAERAFGQLPAGAHISARLRSPGLLDVIRETITTGQPNQVEHSERF PSERVFIVRIARADAGEAAGPPFYILSFRDVSELRRIDRMRSDFVANASHELRTPLAS LRGFIETMQGPARNDPKAQERFLAIMLDQATRMSRLVDDLMSLSRLELRANIAPDQKV DLVPVIGHVRDALLPLANELDVVITLHLPDRPAEVQGDRDELVQVFQNLVENACKYGQ EGKVVDVWLRAEPGKPVEVSVIDKGPGIPAEHVPRLTERFYRVSVADSRSKKGTGLGL AIVKHILTRHRARLIIKSELGNGTDFTVRF" misc_feature 411599..412618 /gene="phoR" /locus_tag="AGROH133_03683" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature 411944..412141 /gene="phoR" /locus_tag="AGROH133_03683" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(411962..411964,411974..411976,411986..411988, 411995..411997,412007..412009,412016..412018, 412070..412072,412082..412084,412091..412093, 412103..412105,412112..412114,412124..412126) /gene="phoR" /locus_tag="AGROH133_03683" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 411980..411982 /gene="phoR" /locus_tag="AGROH133_03683" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 412304..412618 /gene="phoR" /locus_tag="AGROH133_03683" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(412322..412324,412334..412336,412343..412345, 412415..412417,412421..412423,412427..412429, 412433..412438,412517..412528,412574..412576, 412580..412582,412595..412600,412604..412606) /gene="phoR" /locus_tag="AGROH133_03683" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 412334..412336 /gene="phoR" /locus_tag="AGROH133_03683" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(412427..412429,412433..412435,412517..412519, 412523..412525) /gene="phoR" /locus_tag="AGROH133_03683" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 412817..413851 /locus_tag="AGROH133_03685" /db_xref="GeneID:10266166" CDS 412817..413851 /locus_tag="AGROH133_03685" /note="ptsS_2: phosphate binding protein; ABC-type phosphate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter substrate-binding protein" /protein_id="YP_004277717.1" /db_xref="GI:325291853" /db_xref="GeneID:10266166" /translation="MNFVKFSAAALVASVAFAGAAAARDQIQVAGSSTVLPYAKIVAE TFAETFPNFKAPVVESGGTGGGLKAFCSGVGEGTIDIANASRPIKSDELAACKAAGVA DVQEVKIGYDGIVFAMDSSNKDIKLEPKDLYLALAAEIVKDGKLVANPYKKWSEINKE LPDVAIAAYIPGSKHGTREVFEEKIMADGCKEAKATDAIKALITDAKQAAAKCVAVRK DGAAVDIDGDYTETLARIDANKTGLGVFGLAFYENNADRLKVATVSGVVPSTETVASG KYPVSRPLFFYVKKAHLGVIPGLKEYVEFFVSDEMIGPDSPLANYGLVAAPEKEREEI RSKFAAGASM" misc_feature 412886..413746 /locus_tag="AGROH133_03685" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 414126..415610 /gene="pstC" /locus_tag="AGROH133_03687" /db_xref="GeneID:10266167" CDS 414126..415610 /gene="pstC" /locus_tag="AGROH133_03687" /note="phosphate ABC transporter, permease protein PstC; ABC-type phosphate transport system, permease component" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter transmembrane protein" /protein_id="YP_004277718.1" /db_xref="GI:325291854" /db_xref="GeneID:10266167" /translation="MNTSILLLILVLIGIGSYLLGSRRAVALSGGRPSSMHSRAGYHG SYAVVWAVLPAALILCIWLVISPLIVTSAVRGEFPEDVRSQSEAQQSLTYGMVTSIAR GLQRLTPEETAKVDADTAAVRSLLASKGVAIAGEPQRFMVDAAQTLNAMTSTSRLGMI ATVLLAAFAGAAYALRSIAPRFRARNRVERVILAALVVASSIAILTTIGIVLSMLSEA IQFFTMVPAHQFFFGTVWDPRFAAAGATDSSGQFGLIPLLAGTLYIGFVAMLVAVPVG LFSAIYMSEYATPRLRSIVKPLLEVLAGIPTIVYGFFALTTVGPFLRDISTQISGLAT GNYANFIQAQSVITAGFVMGIMLIPYVSSLSDDIITAVPRSLRDGSLGLGATRSETIK KVILPAALPGIVGAVLMTASRAIGETMIVVLAAGVAARLQLNPFEPMTTVTVKIVSQL TGDLEFTSPQTLVAFALGITLFAITLCLNIYALYIVRKYREQYE" misc_feature 414195..414446 /gene="pstC" /locus_tag="AGROH133_03687" /note="Phosphate ATP-binding cassette transporter; Region: DUF3708; pfam12501" /db_xref="CDD:193054" misc_feature 414690..415595 /gene="pstC" /locus_tag="AGROH133_03687" /note="phosphate ABC transporter, permease protein PstC; Region: phosphate_pstC; TIGR02138" /db_xref="CDD:162724" misc_feature 414897..415412 /gene="pstC" /locus_tag="AGROH133_03687" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(414945..414950,414957..414962,414975..414977, 415008..415019,415023..415052,415059..415064, 415068..415070,415188..415193,415197..415199, 415203..415205,415212..415217,415221..415223, 415233..415238,415245..415247,415296..415298, 415338..415343,415350..415352,415371..415382, 415389..415394) /gene="pstC" /locus_tag="AGROH133_03687" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(415026..415070,415371..415388) /gene="pstC" /locus_tag="AGROH133_03687" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(415068..415070,415173..415175,415389..415391) /gene="pstC" /locus_tag="AGROH133_03687" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(415248..415286,415302..415307,415317..415319) /gene="pstC" /locus_tag="AGROH133_03687" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 415607..416929 /gene="pstA" /locus_tag="AGROH133_03697" /db_xref="GeneID:10266168" CDS 415607..416929 /gene="pstA" /locus_tag="AGROH133_03697" /note="phosphate ABC transporter, permease protein PstA; ABC-type phosphate transport system, permease component" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter, permease protein" /protein_id="YP_004277719.1" /db_xref="GI:325291855" /db_xref="GeneID:10266168" /translation="MTDIVSPAAGAAAVNKATRRDIGIKRRYAAERRFRGYGLAAISF GLIFLFLLLWSVVSKGHTAFQQTMITVPVEFSELIIDPKNERATNPAKLMTANYPVLA RDAVAKVLGVAPTDKAGLRAVNVMISDSVRTQLRDIVVADPSVIGTTRSVTLLASGDV DSAFKGQVDMSGDEANRRISNQQLGWMNQLVESGQLGKHFNTGIFVNGASSRPEAAGV GVALIGSFYMMLIVLVLSLPIGVAASIYLEEFAPKNRLTDLIEVNINNLAAVPSIVYG LLGLSVFINFMGFPRSASLVGGLVLTLMTLPTIIIATRAALKAVPPSIRAAALGLGAS KMQTIFHHVLPLAMPGILTGTIIGLAHALGETAPLLLIGMVAFVANYPTTPMDPSTAL PVQIYMWANEAERAFVERTSGAIIILLLFLILMNVGAILLRRRFERRW" misc_feature 415664..416134 /gene="pstA" /locus_tag="AGROH133_03697" /note="Domain of unknown function (DUF3333); Region: DUF3333; pfam11812" /db_xref="CDD:152248" misc_feature 416057..416926 /gene="pstA" /locus_tag="AGROH133_03697" /note="ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]; Region: PstA; COG0581" /db_xref="CDD:30926" misc_feature 416270..>416725 /gene="pstA" /locus_tag="AGROH133_03697" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(416318..416323,416330..416335,416348..416350, 416384..416395,416399..416428,416435..416440, 416444..416446,416519..416524,416528..416530, 416537..416542,416546..416548,416558..416563, 416570..416572,416621..416623,416663..416668, 416675..416677,416696..416707,416714..416719) /gene="pstA" /locus_tag="AGROH133_03697" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(416402..416446,416696..416713) /gene="pstA" /locus_tag="AGROH133_03697" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(416444..416446,416504..416506,416714..416716) /gene="pstA" /locus_tag="AGROH133_03697" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(416573..416611,416627..416632,416642..416644) /gene="pstA" /locus_tag="AGROH133_03697" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 416944..417759 /gene="pstB" /locus_tag="AGROH133_03704" /db_xref="GeneID:10266169" CDS 416944..417759 /gene="pstB" /locus_tag="AGROH133_03704" /note="phosphate ABC transporter ATP-binding protein; ABC-type phosphate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter ATP-binding protein" /protein_id="YP_004277720.1" /db_xref="GI:325291856" /db_xref="GeneID:10266169" /translation="MNMLSEAAVEKALDKKMNEVSYKMIGKDVSVYYGEKRALYDVNL NVRENTVTALIGPSGCGKSTFLRTLNRMNDTIDGCRVTGKITLDTDDIYDQQIDVVEL RARVGMVFQKPNPFPKTIYENIAYGPRIHGLARNKADMDQIVEHSLQKAGLWNEVKDR LLESGTGLSGGQQQRLCIARAVAVSPEVILMDEPCSALDPIATAKVEELIHELRTNYT IVIVTHSMQQAARVSQRTAMFHLGHLVEENETDKMFTNPDDQRTQDYIMGRFG" misc_feature 416956..417756 /gene="pstB" /locus_tag="AGROH133_03704" /note="phosphate transporter ATP-binding protein; Provisional; Region: PRK14235" /db_xref="CDD:184581" misc_feature 417022..417699 /gene="pstB" /locus_tag="AGROH133_03704" /note="Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein...; Region: ABC_PstB_phosphate_transporter; cd03260" /db_xref="CDD:73019" misc_feature 417109..417132 /gene="pstB" /locus_tag="AGROH133_03704" /note="Walker A/P-loop; other site" /db_xref="CDD:73019" misc_feature order(417118..417123,417127..417135,417274..417276, 417517..417522,417613..417615) /gene="pstB" /locus_tag="AGROH133_03704" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73019" misc_feature 417265..417276 /gene="pstB" /locus_tag="AGROH133_03704" /note="Q-loop/lid; other site" /db_xref="CDD:73019" misc_feature 417445..417474 /gene="pstB" /locus_tag="AGROH133_03704" /note="ABC transporter signature motif; other site" /db_xref="CDD:73019" misc_feature 417505..417522 /gene="pstB" /locus_tag="AGROH133_03704" /note="Walker B; other site" /db_xref="CDD:73019" misc_feature 417529..417540 /gene="pstB" /locus_tag="AGROH133_03704" /note="D-loop; other site" /db_xref="CDD:73019" misc_feature 417601..417621 /gene="pstB" /locus_tag="AGROH133_03704" /note="H-loop/switch region; other site" /db_xref="CDD:73019" gene 417858..418583 /gene="phoU" /locus_tag="AGROH133_03705" /db_xref="GeneID:10266170" CDS 417858..418583 /gene="phoU" /locus_tag="AGROH133_03705" /note="PhoU family, phosphate transport system regulatory protein PhoU; Phosphate uptake regulator" /codon_start=1 /transl_table=11 /product="phosphate transport system regulatory protein" /protein_id="YP_004277721.1" /db_xref="GI:325291857" /db_xref="GeneID:10266170" /translation="MTQTTTHSHILSAYDDELKFLTRRIAEMGGLAEQMCGDAVRALV NSDAALAQKVISDDTILDHAEREIGDKAIVTIAKRQPMAADLREIIGTLRIAADLERV GDLGKNTAKRVIAVAGTGVPRKLARGIEHLSDLALVQLKEVLDVYSTRSAEKANAIRE RDEEIDAMYTSLFRELLTYMMEDPRNITTCTHLLFCAKNIERIGDHATNIAETIYYMT TGSQPEGERPKDDSSNTLGSVTE" misc_feature 417891..418526 /gene="phoU" /locus_tag="AGROH133_03705" /note="phosphate transport system regulatory protein PhoU; Region: phoU_full; TIGR02135" /db_xref="CDD:162721" misc_feature 417930..418196 /gene="phoU" /locus_tag="AGROH133_03705" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" misc_feature 418242..418499 /gene="phoU" /locus_tag="AGROH133_03705" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" gene 418615..419298 /gene="phoB" /locus_tag="AGROH133_03706" /db_xref="GeneID:10266171" CDS 418615..419298 /gene="phoB" /locus_tag="AGROH133_03706" /note="Phosphate regulon transcriptional regulatory protein phoB, Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="Phosphate regulon transcriptional regulatory protein phoB" /protein_id="YP_004277722.1" /db_xref="GI:325291858" /db_xref="GeneID:10266171" /translation="MVPKIAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEAEIRLQE RIPDLLILDWMLPGVSGIELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDY VVKPFSTPELMARVKAMLRRARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEF RLLEFLMTSPGRVFSRSQLLDGVWGHDIYVDERTVDVHVGRLRKALNFSHMQDVIRTV RGAGYSMEA" misc_feature 418615..419286 /gene="phoB" /locus_tag="AGROH133_03706" /note="phosphate regulon transcriptional regulatory protein PhoB; Region: PhoB; TIGR02154" /db_xref="CDD:131209" misc_feature 418633..418974 /gene="phoB" /locus_tag="AGROH133_03706" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(418639..418644,418771..418773,418795..418797, 418861..418863,418918..418920,418927..418932) /gene="phoB" /locus_tag="AGROH133_03706" /note="active site" /db_xref="CDD:29071" misc_feature 418771..418773 /gene="phoB" /locus_tag="AGROH133_03706" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(418780..418785,418789..418797) /gene="phoB" /locus_tag="AGROH133_03706" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 418927..418935 /gene="phoB" /locus_tag="AGROH133_03706" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 419008..419289 /gene="phoB" /locus_tag="AGROH133_03706" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(419080..419082,419137..419142,419194..419196, 419203..419205,419227..419232,419263..419265, 419278..419280) /gene="phoB" /locus_tag="AGROH133_03706" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene complement(419600..420133) /locus_tag="AGROH133_03707" /db_xref="GeneID:10266172" CDS complement(419600..420133) /locus_tag="AGROH133_03707" /note="GcrA cell cycle regulator; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277723.1" /db_xref="GI:325291859" /db_xref="GeneID:10266172" /translation="MNWTDERVEKLKKLWSEGLSASQIAAQLGGVSRNAVIGKVHRLN LPGRVKAGGPVTSARSAPKRTAAPAPRATTFAGRVNAAPARILTRSNAATALHEEIDI ETAQVLDYVPSKNVVTPISRRLTLTELTERTCKWPVGDPLKDDFHFCGCEALESSPYC KFHAKLAYQPVSERRKA" misc_feature complement(419603..420133) /locus_tag="AGROH133_03707" /note="GcrA cell cycle regulator; Region: GcrA; cl11564" /db_xref="CDD:142769" gene 420286..420423 /locus_tag="AGROH133_03708" /db_xref="GeneID:10266173" CDS 420286..420423 /locus_tag="AGROH133_03708" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277724.1" /db_xref="GI:325291860" /db_xref="GeneID:10266173" /translation="MARVAGIIWNRFSGFPQLAGVLSLKGNTLGLARRRILVLEKPGK R" gene 420564..421766 /gene="argD" /locus_tag="AGROH133_03709" /db_xref="GeneID:10266174" CDS 420564..421766 /gene="argD" /locus_tag="AGROH133_03709" /EC_number="2.6.1.11" /EC_number="2.6.1.17" /note="DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; Ornithine/acetylornithine aminotransferase" /codon_start=1 /transl_table=11 /product="acetylornithine aminotransferase" /protein_id="YP_004277725.1" /db_xref="GI:325291861" /db_xref="GeneID:10266174" /translation="MAEAGAPLFDTFSRAPLRFERGEGVWLFTESGERYLDFAAGVAV NSLGHAHPHLVDAIKTQAEKVWHVSNLYEVPGQEKLARRLTEATFADKVFFTNSGAEA LECAIKTARRYHYTKGHPEKFRIVSFEGAFHGRTLATIAAGGQQKYLEGFGPKVEGFD QVPFGDVDALKAVITAETAALLIEPIQGEGGIRSPSKEFLQILRGLCDEHGLLLIFDE VQTGVGRTGKLFAYEHTGVAPDIMAVAKGIGGGFPLGACLATADAASGMTAGVHGTTY GGNPLAMAVGNAVLDVVLSEGFLEKVRDVALVFRQGLASLKDRYPDVIEEIRGEGLLL GIKAKIPSGELLQAMRAEHLLGVPAGDNVIRLLPPLVTTAEEAREGLARIDAAAASLT VAKQAKSA" misc_feature 420582..421736 /gene="argD" /locus_tag="AGROH133_03709" /note="acetylornithine transaminase protein; Provisional; Region: argD; PRK01278" /db_xref="CDD:179270" misc_feature 420594..421724 /gene="argD" /locus_tag="AGROH133_03709" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature order(420855..420863,420957..420962,420966..420968, 421113..421115,421212..421214,421218..421223, 421299..421301) /gene="argD" /locus_tag="AGROH133_03709" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature order(420858..420863,420957..420962,421113..421115, 421212..421214,421221..421223,421299..421301) /gene="argD" /locus_tag="AGROH133_03709" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 421299..421301 /gene="argD" /locus_tag="AGROH133_03709" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 421821..422738 /gene="argF2" /locus_tag="AGROH133_03710" /db_xref="GeneID:10266175" CDS 421821..422738 /gene="argF2" /locus_tag="AGROH133_03710" /EC_number="2.1.3.3" /note="catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation" /codon_start=1 /transl_table=11 /product="Ornithine carbamoyltransferase" /protein_id="YP_004277726.1" /db_xref="GI:325291862" /db_xref="GeneID:10266175" /translation="MGSPKHFLDLSAVGSEDLRTILDDARTRKIATKTGTAEKPLAGK MLAMIFEKPSTRTRVSFDVGMRQLGGETLFLSGTEMQLGRAETIGDTAKVLSRYVDAI MIRTTDHSRLLELAEHATVPVINGLTDDTHPCQIMADILTFEEHRGPVKGKTIAWTGD GNNVLHSFVEGSARFGYRMAMAVPMGSEPHDKFLNWARNNGGEISLYHDADKAVAGAD CVVTDTWVSMNQEHKARGHNIFQPYQVNEALMAKANKEALFMHCLPAHRGEEVTDAVI DGPQSVVFDEAENRLHAQKSIIAWCMGVI" misc_feature 421821..422726 /gene="argF2" /locus_tag="AGROH133_03710" /note="ornithine carbamoyltransferase; Provisional; Region: PRK00779" /db_xref="CDD:179122" misc_feature 421833..422258 /gene="argF2" /locus_tag="AGROH133_03710" /note="Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729" /db_xref="CDD:190401" misc_feature 422271..422723 /gene="argF2" /locus_tag="AGROH133_03710" /note="Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185" /db_xref="CDD:189438" gene 422785..423951 /gene="hslO" /locus_tag="AGROH133_03711" /db_xref="GeneID:10266176" CDS 422785..423951 /gene="hslO" /locus_tag="AGROH133_03711" /note="becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Disulfide bond chaperones of the HSP33 family" /codon_start=1 /transl_table=11 /product="Hsp33-like chaperonin" /protein_id="YP_004277727.1" /db_xref="GI:325291863" /db_xref="GeneID:10266176" /translation="MGLRRRSSAFRWRATSRFARFSPEAVSLPGSLCDKLKKYILKAG LLDGSGATAAPRSYDMADVTVELDNLDLAGDDKVVPFQVEGLDVRGRAVQVGPLLNAI LERHEYPEIVARLLAEATVLTALIGTSLKFSGKLTVQTKGDGPVDLLVADFTAPESMR AYARFDEERLAEAVAAGQTSPEQLLGTGILAFTIDQGVGMQPYQGIVPLDGSSLEEIA GVYFRQSEQLPTRVRLGVAQFFDRDGEGKPRHSWRAGGVIAQFLPQAPERLRMRDLHG GDGDEGDYEVAEDDAWTEAVSLLNTVDTDELTDPQVPVERLLYRLFHESGVRIYDPQV IFDRCSCSRDKIKGVLSGFTAEEIKASEEDGAIAVTCEFCSTTYRYDVSEFENV" misc_feature 423010..423942 /gene="hslO" /locus_tag="AGROH133_03711" /note="Hsp33-like chaperonin; Reviewed; Region: hslO; PRK00114" /db_xref="CDD:178874" misc_feature 423016..423927 /gene="hslO" /locus_tag="AGROH133_03711" /note="Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat...; Region: Hsp33; cd00498" /db_xref="CDD:29605" misc_feature order(423049..423051,423445..423447,423457..423465, 423562..423564,423799..423801) /gene="hslO" /locus_tag="AGROH133_03711" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29605" misc_feature order(423049..423051,423544..423546,423550..423552, 423562..423573) /gene="hslO" /locus_tag="AGROH133_03711" /note="domain crossover interface; other site" /db_xref="CDD:29605" misc_feature order(423799..423801,423805..423807,423895..423897, 423904..423906) /gene="hslO" /locus_tag="AGROH133_03711" /note="redox-dependent activation switch; other site" /db_xref="CDD:29605" gene complement(423990..424382) /gene="apaG" /locus_tag="AGROH133_03712" /db_xref="GeneID:10266177" CDS complement(423990..424382) /gene="apaG" /locus_tag="AGROH133_03712" /note="protein associated with Co2+ and Mg2+ efflux; Uncharacterized protein affecting Mg2+/Co2+ transport" /codon_start=1 /transl_table=11 /product="ApaG" /protein_id="YP_004277728.1" /db_xref="GI:325291864" /db_xref="GeneID:10266177" /translation="MYRALTRDIEVTVDPYYLEEQSDPDDDRYVWGYKVVISNNSDVP ITLVNRYWHITDQNGQVDEVYGPGVVGEKPHLNPGDSYEYSSGCPLDTPSGLMFGHYE METDKGEVFNVTIPAFSLDSPGLLRVLN" misc_feature complement(424005..424382) /gene="apaG" /locus_tag="AGROH133_03712" /note="Protein of unknown function (DUF525); Region: DUF525; cl01119" /db_xref="CDD:194041" gene complement(424611..425795) /gene="metZ" /locus_tag="AGROH133_03713" /db_xref="GeneID:10266178" CDS complement(424611..425795) /gene="metZ" /locus_tag="AGROH133_03713" /EC_number="4.2.99.-" /note="catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis; Cystathionine beta-lyases/cystathionine gamma- synthases" /codon_start=1 /transl_table=11 /product="O-succinylhomoserine sulfhydrylase" /protein_id="YP_004277729.1" /db_xref="GI:325291865" /db_xref="GeneID:10266178" /translation="MSNKWRPATQLVHGGTLRSPYGETSEAIYLTQGFVYENSEAAEA RFKGETDGFIYARYASPTNDMFEKRMCLLEGAEDARALASGMAAVTAAIMCQLRAGDH IVAARALFGSCRWVVETLAPKYGIECTLIDGRDLNNWEKAIQPNTKLFFLESPTNPTL EVVDIAGVAKLANQIGAKVVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGG VILSDKKWIEEELQDYFRHTGPAMSPFNAWTLLKGIETLPLRVKQQTANASKIADFLA DSGKVAKVIYPGRADHPQADIIARQMSGGSTLVAFELKGGKEAAFALQNALDIVKISN NLGDAKSLITHPGTTTHKNLTDEARAELGISGGTLRLSCGIEDTDDLLEDLAKGLAAV SV" misc_feature complement(424617..425795) /gene="metZ" /locus_tag="AGROH133_03713" /note="O-succinylhomoserine sulfhydrylase; Reviewed; Region: PRK07504" /db_xref="CDD:168979" misc_feature complement(424626..425714) /gene="metZ" /locus_tag="AGROH133_03713" /note="CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614" /db_xref="CDD:99738" misc_feature complement(order(424821..424823,425058..425063, 425067..425069,425097..425099,425148..425150, 425154..425156,425178..425180,425442..425444, 425451..425453,425466..425468,425535..425540, 425544..425549,425625..425627,425631..425633, 425688..425693,425697..425708)) /gene="metZ" /locus_tag="AGROH133_03713" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99738" misc_feature complement(order(425148..425150,425175..425180, 425184..425186,425250..425252,425337..425339, 425466..425468,425538..425546)) /gene="metZ" /locus_tag="AGROH133_03713" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:99738" misc_feature complement(order(425175..425180,425184..425186, 425241..425243,425250..425252,425466..425468, 425538..425546)) /gene="metZ" /locus_tag="AGROH133_03713" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature complement(425175..425177) /gene="metZ" /locus_tag="AGROH133_03713" /note="catalytic residue [active]" /db_xref="CDD:99738" gene 425990..427087 /gene="dcd" /locus_tag="AGROH133_03714" /db_xref="GeneID:10266179" CDS 425990..427087 /gene="dcd" /locus_tag="AGROH133_03714" /EC_number="3.5.4.13" /note="Catalyzes the deamination of dCTP to form dUTP; Deoxycytidine deaminase" /codon_start=1 /transl_table=11 /product="2'-deoxycytidine 5'-triphosphate deaminase" /protein_id="YP_004277730.1" /db_xref="GI:325291866" /db_xref="GeneID:10266179" /translation="MTRTTGILADGAIRALFAGGKLKSEADLDVDQVQPASLDLRLGS KAYRVRASFMPGPGTRVIDKLNRFSLHEVDLSEGAVLETGCVYIVPLMESLELPADMS ASANPKSSTGRLDIFTRVMTDNAQEFDKIPAGYAGPLYLEISPRTFPVVVRRGSRLSQ IRFRIGHSLLNEAELLKLHETEMLVASETPNVTGGGIALSIDLKGFGEKGLIGYRGKH HTAVVDVDKKAQHDVLDFWEPLYARGRAELILDPDEFYILVSREAVHVPPLYAAEMTP FDPLVGEFRVHYAGFFDPGFGHAQAGGTGSRAVLEVRSHEVPFILEHGQIVGRLVYEH MLQKPDGLYGSGLGSNYQAQGLKLSKHFRAE" misc_feature 425990..427084 /gene="dcd" /locus_tag="AGROH133_03714" /note="2'-deoxycytidine 5'-triphosphate deaminase; Provisional; Region: PRK07559" /db_xref="CDD:181028" misc_feature 426008..>426319 /gene="dcd" /locus_tag="AGROH133_03714" /note="Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cl00493" /db_xref="CDD:186033" misc_feature 426206..426478 /gene="dcd" /locus_tag="AGROH133_03714" /note="Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557" /db_xref="CDD:143638" misc_feature order(426227..426229,426242..426247,426251..426253, 426299..426301,426305..426322,426335..426343, 426377..426379,426386..426388,426407..426409, 426413..426415,426419..426421,426425..426427, 426434..426448,426455..426457,426467..426469) /gene="dcd" /locus_tag="AGROH133_03714" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:143638" misc_feature order(426311..426319,426377..426385,426392..426394, 426404..426409) /gene="dcd" /locus_tag="AGROH133_03714" /note="active site" /db_xref="CDD:143638" misc_feature 426410..427084 /gene="dcd" /locus_tag="AGROH133_03714" /note="Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cl00493" /db_xref="CDD:186033" gene 427144..427217 /locus_tag="AGROH133_03715" /db_xref="GeneID:10266180" tRNA 427144..427217 /locus_tag="AGROH133_03715" /product="tRNA-Gly" /anticodon=(pos:427176..427178,aa:Gly) /db_xref="GeneID:10266180" gene 427372..428058 /gene="aqpZ" /locus_tag="AGROH133_03716" /db_xref="GeneID:10266181" CDS 427372..428058 /gene="aqpZ" /locus_tag="AGROH133_03716" /note="porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)" /codon_start=1 /transl_table=11 /product="aquaporin Z" /protein_id="YP_004277731.1" /db_xref="GI:325291867" /db_xref="GeneID:10266181" /translation="MSRKLLSEFLGTFWLVFGGCGSAVFAAAFPELGIGFLGVAFAFG LTVLTMAYAVGGISGGHFNPAVSVGLSVAGKFPASNLVPYIVAQVLGAIVAAGALYVI LTGKAGADIGGFAANGYGEHSPGGYSLVSALLIEVILTAFFLIVILGSTHGRVPTGFA PIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPILGAAIGA VVWKLFGEKD" misc_feature 427378..428043 /gene="aqpZ" /locus_tag="AGROH133_03716" /note="Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-...; Region: MIP; cd00333" /db_xref="CDD:29423" misc_feature order(427498..427500,427552..427560,427909..427914, 427921..427923,427930..427932) /gene="aqpZ" /locus_tag="AGROH133_03716" /note="amphipathic channel; other site" /db_xref="CDD:29423" misc_feature order(427558..427566,427921..427929) /gene="aqpZ" /locus_tag="AGROH133_03716" /note="Asn-Pro-Ala signature motifs; other site" /db_xref="CDD:29423" gene 428149..428442 /locus_tag="AGROH133_03724" /db_xref="GeneID:10266182" CDS 428149..428442 /locus_tag="AGROH133_03724" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277732.1" /db_xref="GI:325291868" /db_xref="GeneID:10266182" /translation="MDLTSILAQIVGGAVGGSAGGKILKDSDLGALGNLIAGAIGGIG GGTVLGSLLGTAGTAAAGGTDIGALAGQLVGGGVGGLIVQIIVGLIKNKLVTK" gene complement(428578..430533) /locus_tag="AGROH133_03728" /db_xref="GeneID:10266183" CDS complement(428578..430533) /locus_tag="AGROH133_03728" /note="glycosyl transferase, family 2; glycosyltransferases, probably involved in cell wall biogenesis" /codon_start=1 /transl_table=11 /product="glycosyltransferase" /protein_id="YP_004277733.1" /db_xref="GI:325291869" /db_xref="GeneID:10266183" /translation="MAAAAMHGYFRHYTRESFRTTSAGRKIAFSLIGDNPLWTAPEPD EHGPTRFLSSLGFGKPYIAAFEEQALKNGSTVEDELLASGLVDADAYYGAFARLLRLP FRPEIDPGRVADINHLDAQLAEPRLLRLTPLNGKPVLLIVPELARMELLKGILDQRPY LLEELAVTTPQAMRSAIWKAGEARRCRDTRHQLFNAAPQHSARITLHGEQGFVSGIFV TLLVLSLLFYTQAAMAYIHVTLTMLYLSTLLFRLFALVHTPKGNDAKTVIPLQQDGEL PVYTILVALYREEAVVEQLIHALERLDWPKSRLDIKLVCEADDVATIEAIQRINPGPH IEIVSVPPSMPRTKPKALTYALSGARGTFVAVYDAEDRPHPLQLREAYAAFRGQPDEV ACVQAPLIISNASSSWLSACFALEYSGLFRCMLPVLAACKLPLPLGGTSNHFRTAVLR RVGGWDPYNVTEDADMGLRLHRLGYRCGVIRRQTLEDAPTSLSVWLNQRARWYKGWLQ SWLVMTRSPFTTARRMGWIAYIVFQLLIGGMLLSSLAHPLLFVSFAFMAMAIRENGAD MLLSWQGILFFIDTLNIFGSYAIFVLMGRNRMIAHEKQQVGRRWLAIPLYWLMLSLAA WRAVVELKTKPFVWNKTPHMPVIRNKA" misc_feature complement(428605..429900) /locus_tag="AGROH133_03728" /note="Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: COG1215" /db_xref="CDD:31408" misc_feature complement(428983..429705) /locus_tag="AGROH133_03728" /note="CESA_like_2 is a member of the cellulose synthase superfamily; Region: CESA_like_2; cd06427" /db_xref="CDD:133049" misc_feature complement(429424..429432) /locus_tag="AGROH133_03728" /note="DXD motif; other site" /db_xref="CDD:133049" gene 430568..431446 /locus_tag="AGROH133_03734" /db_xref="GeneID:10266184" CDS 430568..431446 /locus_tag="AGROH133_03734" /note="ABC transporter substrate-binding protein (amino acid); ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter substrate-binding protein" /protein_id="YP_004277734.1" /db_xref="GI:325291870" /db_xref="GeneID:10266184" /translation="MRMMNVTRNIVIGFTLAIALQFGGNLGELHAEGLSDRNRMPVLF DAQERFPGGDLSSVPRIRFLMSVDFPPFNFTDQEGRLAGFHVDLVREICAQLKVESKC QVQALPFDELEAALEMGEGEAVISGIATTADLRKSFTFSRPYLLLPARLAVNKAAKFT GSGADALSGKKVGVVTGSRHEQMLKAFFPKASAEGFNGYEPMYEALKTGKVDAVFADG LRLPFWVSGSASGACCALFGGPYLSDRFLGEGLSIMAVDPDDVLVPAFDQALAALSRN GRLEEIYRRYFPYGLY" misc_feature 430748..431431 /locus_tag="AGROH133_03734" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature 430748..431428 /locus_tag="AGROH133_03734" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(430772..430774,430892..430894,430967..430969, 431102..431104,431216..431218) /locus_tag="AGROH133_03734" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(431165..431167,431177..431179,431195..431197) /locus_tag="AGROH133_03734" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature order(431300..431302,431309..431323) /locus_tag="AGROH133_03734" /note="hinge residues; other site" /db_xref="CDD:29040" gene complement(431487..432767) /locus_tag="AGROH133_03735" /db_xref="GeneID:10266185" CDS complement(431487..432767) /locus_tag="AGROH133_03735" /note="Membrane protein involved in the export of O- antigen and teichoic acid" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein" /protein_id="YP_004277735.1" /db_xref="GI:325291871" /db_xref="GeneID:10266185" /translation="MSLNTPRFSHLVRLGLTYMASGGALLMSSAAQLLTFALLARHLG VEQFALYASITAVTNLGVQICGFGSQESLIRRVAQDRSMFPVMLGHSYLLSAATGIVL TIIGMVTIPVFFPTSETLLHTLITTFVILVTNLILLKVISLSTQSFIAHSDFASANKL EVMFAVARTIAAVVACLIFKVETVEAWALWNLAAHTIAAVISLKAIGRLGRPVFRIVR DEIRIGILFSTQFLFKAVRGNADILVLGAVASAEVLGSYSIARRILDSSYLSVEALNR LIYPGSASAALQGIGKTIERAYNVLKAALVIAVGSALVIFIIAPFLPILFGDEYVSLP IITRILCWVVLPMAVAATALEALGASGRQDIRAKIWNSGNLIGSVIVAFLTWSFSISG TIGSYFFVEAAIAAAVWIALLRLRRNEEAFAPAK" misc_feature complement(431916..432665) /locus_tag="AGROH133_03735" /note="Polysaccharide biosynthesis protein; Region: Polysacc_synt; cl10513" /db_xref="CDD:187004" gene 433052..434359 /gene="exoQ" /locus_tag="AGROH133_03748" /db_xref="GeneID:10266186" CDS 433052..434359 /gene="exoQ" /locus_tag="AGROH133_03748" /note="O-antigen polymerase; Lipid A core - O-antigen ligase and related enzymes" /codon_start=1 /transl_table=11 /product="exopolysaccharide production protein" /protein_id="YP_004277736.1" /db_xref="GI:325291872" /db_xref="GeneID:10266186" /translation="MWPTMPPFTDTQSIPVQANSMSLTGGRRDAIFFVVTMLYIWISV APFENLAAAPVPHAAANQLTGLVIALMLGVFALRHRLTGLLLRPRLPILLLFSWLVIC SVLGSQPGTSLQRLLFTGLLCFITSVLVVMPRDRRQFDRMMAIFAVILLALCYFGVIF LRSRSIHQPYDLDETALAGDWRGIFNHKNAAAPAMIILVMIGLYLRNSWSTVGGIVIT LLAGFFLWKTNGKTAAMLLPVTVALVWVMERHAGRTLLMIGGLLAFLNILAVGSTYFP SIRHVVDSLGIDSTFTGRTDIWRLSFDTFAQSPIFGQGFQAFWTSDRLLAQADTAGTW AVTAFHAHNGFVESLLNGGLPAFVLIVIWLVIIPANDFRIAVNKGTDPALTRLFARIW VYALLSSCLESNFFTGTGPIWSSLLIAIYCLRHQAYDILEQGQ" misc_feature 433631..434134 /gene="exoQ" /locus_tag="AGROH133_03748" /note="O-Antigen ligase; Region: Wzy_C; cl04850" /db_xref="CDD:194980" gene 434387..435139 /locus_tag="AGROH133_03757" /db_xref="GeneID:10266187" CDS 434387..435139 /locus_tag="AGROH133_03757" /note="glycoside hydrolase/deacetylase, beta/alpha-barrel, Polysaccharide deacetylase; Predicted xylanase/chitin deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase" /protein_id="YP_004277737.1" /db_xref="GI:325291873" /db_xref="GeneID:10266187" /translation="MTQKIGTFADRINNRLVQYFPGPASLIKTSEPIVSFTFDDVPAT AWTKGARILESEGVRGTFYLAGTFIDKHYEQQDMISTEGCSELAAAGHELACHTFSHR KLSSFSRRGLEEDLDRNETVLGSFAENRGRRNFSVPFGMASPVMQPLLRRRFKTARGI MPGINRGSIDPYNLAGVELRADQNYLDAADRWLEDVLQNGGWLIIFTHDVSQTPSFYG CPEDKLQSLVRRAASGGAKIMTVDAAATSLGL" misc_feature 434465..434842 /locus_tag="AGROH133_03757" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene complement(435214..435864) /gene="c1" /locus_tag="AGROH133_03758" /db_xref="GeneID:10266188" CDS complement(435214..435864) /gene="c1" /locus_tag="AGROH133_03758" /note="Peptidase S24, S26A, S26B and S26C; Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="bacteriophage repressor protein C1" /protein_id="YP_004277738.1" /db_xref="GI:325291874" /db_xref="GeneID:10266188" /translation="MLSHETIWSAIDTLAKRHQLTPSALAKRAGLDSTSFNKSKRFGP DGRKRWPSTESVSKVLEATGASVDQFFGYAFGRTQTMQPSGADNAIPLLGFAQAGSGG FFDDGGFPAGQGWDVVEFPSSPERKQGVYALEVQGESMMPLYRDGDILIVEPGAQVRR GDRVVLKSRDGEVMAKVLARQSPKNIELLSLNPEHPNRSFDMADVEWIARIIWASQ" misc_feature complement(435217..435864) /gene="c1" /locus_tag="AGROH133_03758" /note="Predicted transcriptional regulator [Transcription]; Region: COG2932" /db_xref="CDD:32756" misc_feature complement(435229..435474) /gene="c1" /locus_tag="AGROH133_03758" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature complement(order(435337..435339,435448..435450)) /gene="c1" /locus_tag="AGROH133_03758" /note="Catalytic site [active]" /db_xref="CDD:119397" gene complement(435976..436626) /locus_tag="AGROH133_03759" /db_xref="GeneID:10266189" CDS complement(435976..436626) /locus_tag="AGROH133_03759" /note="CheY-like, Response regulator receiver domain; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004277739.1" /db_xref="GI:325291875" /db_xref="GeneID:10266189" /translation="MSELVIIIADDHPLFRGALKQAVSGLDGQQTIMEAGDFEAARSA ATACNDADLMLLDLAMPGVSGFSGLMALRAEFSSLPIVIVSATDDATTVRRSIELGAS GFISKSSGIDDIRDGIRAVLEGDVWIPASCQGEKEHDPDVADLIGRLRTLTPQQSRVL GMLAEGLLNKQIAYALNVSEATIKAHVSAILLKLKVDSRTQAVIQLSKINTSAMVA" misc_feature complement(436003..436611) /locus_tag="AGROH133_03759" /note="Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197" /db_xref="CDD:32379" misc_feature complement(436261..436608) /locus_tag="AGROH133_03759" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(436303..436308,436315..436317, 436372..436374,436432..436434,436456..436458, 436594..436599)) /locus_tag="AGROH133_03759" /note="active site" /db_xref="CDD:29071" misc_feature complement(436456..436458) /locus_tag="AGROH133_03759" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(436432..436440,436444..436449)) /locus_tag="AGROH133_03759" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(436300..436308) /locus_tag="AGROH133_03759" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(436015..436173) /locus_tag="AGROH133_03759" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature complement(order(436030..436032,436063..436077, 436081..436086,436090..436095,436117..436125, 436162..436170)) /locus_tag="AGROH133_03759" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature complement(order(436015..436017,436024..436032, 436123..436125,436129..436131,436135..436137)) /locus_tag="AGROH133_03759" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 436871..437224 /locus_tag="AGROH133_03761" /db_xref="GeneID:10266190" CDS 436871..437224 /locus_tag="AGROH133_03761" /note="Protein of unknown function DUF952; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277740.1" /db_xref="GI:325291876" /db_xref="GeneID:10266190" /translation="MHETPAIIYKIVPETLWNAARAQGVFEGAAIDLTDGFIHFSTAK QAAETAARHFSGQADLLLIAVDGAALGDKLVYEPSRGGDLFPHLYASLPLTAVLWETP LSLGHDGQHQFPEIL" misc_feature 436877..437221 /locus_tag="AGROH133_03761" /note="Protein of unknown function (DUF952); Region: DUF952; cl01393" /db_xref="CDD:194122" gene 437224..438315 /gene="pyrD" /locus_tag="AGROH133_03762" /db_xref="GeneID:10266191" CDS 437224..438315 /gene="pyrD" /locus_tag="AGROH133_03762" /EC_number="1.3.3.1" /note="catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors" /codon_start=1 /transl_table=11 /product="Dihydroorotate dehydrogenase" /protein_id="YP_004277741.1" /db_xref="GI:325291877" /db_xref="GeneID:10266191" /translation="MSGLFSSIGRKGLFLVDPEKAHGLSVAALKSGFLPTCMVPHDPR LQQTVAGLVFPNPLGMAAGYDKNAEVPGPLLRLGFGFTEIGTVTPRGQSGNPKPRIFR LVEDEGVINRLGFNNEGHAAALERLKQAQLRGIVGVNIGANKDSEDRIADYVQGIEAF YSVASYFTVNISSPNTPGLRDLQARESLAALLGAVLERRRAEAERFGKRIPIFLKIAP DLTEEGLDDVAEEALAHDLDGLIVSNTTLSREGLRPGPHKGEAGGLSGKPLFELSTTV LAKMRRRVGSNLPIIGVGGVSSPETALEKVRAGADLVQLYSCMVYEGPGLPSSIVKGL SKLVSREGVQSIRDLRDSTVDRWADRKLG" misc_feature 437251..438225 /gene="pyrD" /locus_tag="AGROH133_03762" /note="Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD...; Region: DHOD_2_like; cd04738" /db_xref="CDD:73400" misc_feature order(437287..437289,437527..437529) /gene="pyrD" /locus_tag="AGROH133_03762" /note="quinone interaction residues [chemical binding]; other site" /db_xref="CDD:73400" misc_feature 437353..438291 /gene="pyrD" /locus_tag="AGROH133_03762" /note="Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]; Region: PyrD; COG0167" /db_xref="CDD:30516" misc_feature order(437407..437409,437419..437421,437479..437481, 437554..437556,437560..437568,437731..437733, 437740..437742,437746..437748,437866..437868, 437950..437958,438019..438021,438106..438108, 438169..438174) /gene="pyrD" /locus_tag="AGROH133_03762" /note="active site" /db_xref="CDD:73400" misc_feature order(437419..437421,437740..437742,437866..437868) /gene="pyrD" /locus_tag="AGROH133_03762" /note="catalytic residues [active]" /db_xref="CDD:73400" misc_feature order(437479..437481,437554..437556,437731..437733, 437866..437868,437950..437955,438019..438021, 438106..438108,438169..438174) /gene="pyrD" /locus_tag="AGROH133_03762" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73400" misc_feature order(437554..437556,437731..437733,437737..437739, 437953..437958) /gene="pyrD" /locus_tag="AGROH133_03762" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73400" gene complement(438436..438933) /locus_tag="AGROH133_03763" /db_xref="GeneID:10266192" CDS complement(438436..438933) /locus_tag="AGROH133_03763" /note="SCP-like extracellular protein; Uncharacterized protein with SCP/PR1 domains" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277742.1" /db_xref="GI:325291878" /db_xref="GeneID:10266192" /translation="MTDTSFQTLTRRGFVLISAGSVLSACVSVPTNKGMPSGTRDETA AALPMVNELRRSKGLSPLSFSSAASGAAAYQAGRMVKAQKMAHLIGLTDSFLIRMKDG NVPLPAAENVAAGQDSVERVVKAWIGSKHHLENMLGPYNGLGVAVAYDAASRNRPYWA MVLCA" misc_feature complement(438442..438804) /locus_tag="AGROH133_03763" /note="SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5...; Region: SCP_bacterial; cd05379" /db_xref="CDD:88558" gene complement(438935..439201) /locus_tag="AGROH133_03764" /db_xref="GeneID:10266193" CDS complement(438935..439201) /locus_tag="AGROH133_03764" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277743.1" /db_xref="GI:325291879" /db_xref="GeneID:10266193" /translation="MAGEVNKMLGDTVARTVVKLLVVSLLVGFLMAIFGLTPWNIIYG ARDFVVDLWRSGFHALGAIGDYLILGATIVIPIFIILRLLSYRR" gene 439371..440312 /locus_tag="AGROH133_03767" /db_xref="GeneID:10266194" CDS 439371..440312 /locus_tag="AGROH133_03767" /note="methyltransferase type 12; Predicted methyltransferase (contains TPR repeat)" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_004277744.1" /db_xref="GI:325291880" /db_xref="GeneID:10266194" /translation="MAPNQFSSGDVIADRRADYARMLAESGDYPAAAELMEQALELAP RWTAGWFRFGEYHEKAGETDKAVAAYEKVAELDTEGLFAAELKLAVLGAADTPEQPPS RYVEGLFDDYADRFETSLVEKLDYSVPQKLAELIGKATGGGVFDTIVDIGCGTGLLGV EIRSLAKRLEGFDISQNMLAKAEEKGLYDHLGQADLSLEADASGLFAPAMPHHRADLV AAADVMMYLGSLETVMPLVSALLAPSGFFAFSVEDAGDEDGFVLRESLRYAHSKSYVS GLLERAGYSLIEIRKTTIRKDAGKPLSGILFLARAKA" misc_feature 439425..440309 /locus_tag="AGROH133_03767" /note="Predicted methyltransferase (contains TPR repeat) [General function prediction only]; Region: COG4976" /db_xref="CDD:34582" misc_feature 439815..440111 /locus_tag="AGROH133_03767" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 440420..441058 /locus_tag="AGROH133_03768" /db_xref="GeneID:10266195" CDS 440420..441058 /locus_tag="AGROH133_03768" /note="Protein of unknown function DUF161, Uncharacterized BCR, YitT family COG1284; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277745.1" /db_xref="GI:325291881" /db_xref="GeneID:10266195" /translation="MSRTRSVYSMWSSDPAKHAPVEDVQGIVTGAIVSALGFYLLNKV GLLTGGTAGVAFLIHYAFGISFGLLFFLVNLPFYYLSFRRLGLAFSIKTFIAIGLVSV LTEVEARWMVIDSINPLWAALLGGLLLGYGLLALYRHRASLGGIGILAIYIQDRFGIR AGLIQLAFDAFVMLCAFLVIDPATVIYSIVGAFVLNMFLAINHRSDRYIVVR" misc_feature 440438..>441052 /locus_tag="AGROH133_03768" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1284" /db_xref="CDD:31475" misc_feature 440498..440731 /locus_tag="AGROH133_03768" /note="Uncharacterized BCR, YitT family COG1284; Region: DUF161; pfam02588" /db_xref="CDD:190354" gene 441132..441773 /locus_tag="AGROH133_03775" /db_xref="GeneID:10266196" CDS 441132..441773 /locus_tag="AGROH133_03775" /note="Protein of unknown function DUF161, Uncharacterized BCR, YitT family COG1284; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277746.1" /db_xref="GI:325291882" /db_xref="GeneID:10266196" /translation="MGDTTTRKRVNIWASAPDRHSLLEDAQGVLAGSMLVSLGVTLLS AAGLLTGGVVGIAFLVHYSIGFSFGAVFFLVNLPFYYLAFRRLGLAFTVKTFCAIAMT ALLSEYMPGFFAFESINPVAAALFGGLTVAAGMLALFRHRTSLGGFGILALYLQDRFG WRAGLVQLAFDGMVLACSFFVATPFVILCSILGALVMNLALAINHRNDRYIAM" misc_feature 441162..>441770 /locus_tag="AGROH133_03775" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1284" /db_xref="CDD:31475" misc_feature 441489..441734 /locus_tag="AGROH133_03775" /note="Uncharacterized BCR, YitT family COG1284; Region: DUF161; pfam02588" /db_xref="CDD:190354" gene complement(441800..442261) /locus_tag="AGROH133_03782" /db_xref="GeneID:10266197" CDS complement(441800..442261) /locus_tag="AGROH133_03782" /note="Carboxymuconolactone decarboxylase family, ahpD_dom: alkylhydroperoxidase AhpD family core domain; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="alkylhydroperoxidase like protein, AhpD family" /protein_id="YP_004277747.1" /db_xref="GI:325291883" /db_xref="GeneID:10266197" /translation="MKTRLNYAKASPEAFKAVMALETYVQSSGLERRFVHLIKLRASI INGCAFCVDMHVKESRHDGLSEQWINLMSVWRESPVYTEQERALLGWVDAVTKIAETG APDDAFETLKAHFSDEDIVKITVAIGAINTWNRIAVGFRSQHPVEATAKAA" misc_feature complement(441980..442228) /locus_tag="AGROH133_03782" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene complement(442362..442865) /locus_tag="AGROH133_03783" /db_xref="GeneID:10266198" CDS complement(442362..442865) /locus_tag="AGROH133_03783" /note="Transcriptional regulator, Rrf2; Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="HTH-type transcriptional repressor nsrR" /protein_id="YP_004277748.1" /db_xref="GI:325291884" /db_xref="GeneID:10266198" /translation="MKLGDGVEQAIHSVGMLAGLSEGGVLSAAALAEFHGVSTSYLLK HLQLLSGAGIVSTVPGPKGGYRLARTTDKITLLDIVLAVEGPQPAFRCAEIRQRGPNP LPGRYFTKPCGINAAMLKAEKAYRAELAKTSIADILGDLAATDDGGIAARGCAFLELN ERRTATR" misc_feature complement(442395..442865) /locus_tag="AGROH133_03783" /note="Predicted transcriptional regulator [Transcription]; Region: COG1959" /db_xref="CDD:32142" misc_feature complement(442617..442862) /locus_tag="AGROH133_03783" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 442916..445507 /gene="lhr" /locus_tag="AGROH133_03785" /db_xref="GeneID:10266199" CDS 442916..445507 /gene="lhr" /locus_tag="AGROH133_03785" /EC_number="3.6.1.-" /note="DEAD-like helicase, N-terminal, DEAD/H associated; Lhr-like helicases" /codon_start=1 /transl_table=11 /product="large atp-dependent helicase-related protein" /protein_id="YP_004277749.1" /db_xref="GI:325291885" /db_xref="GeneID:10266199" /translation="MIMHSCQAALFRSSFFKVSHYLEGVKHAESPISGTHVGTLPLSF QKWFAEKGWSPRAHQLELMARARGGENMLLIAPTGAGKTLGGFMASLTDLAERGKVPP GSAFVGVHTLYISPLKALAVDIERNLTKPVMEMGLPISIETRTGDTPQAKRQRQKVKP PDILLTTPEQVSLLLANKEAERFFRDLKYVVLDELHSLVTSKRGHLLSLALARVRRHA PHVRFIGLSATVAEPMDLRRYLAPQGQGEPPAGLITVEGGAKPNIAILQTEERIPWSG HSARYAMKDLYPALKAHQTTLIFVNTRSQAERIFQELWNVNDDNLPIALHHGSLDAGQ RRRVEAAMAENKLRAVVATSTLDLGIDWGDVDLVVHVGAPKGASRLAQRIGRANHRMD EPSKAILVPANRFEVMECRAALDANYIGAQDTPPIAQGALDVLAQHVLGMACAEPFDA DDLYREVTSASPYADLPRSTFDRVVDFTATGGYALRTYERYARIRQMKDGRWRVSNPA VAQQYRLNLGTIVEAAELNVRMVKRNAKGSVGRGGMSLGKVEEYFLEQLVQGDTFLFA GKVLRFEGIRENECLVSQAFSIDPKIPSYAGGKFPLSTYLADQVRSMLSDPARWQSLP DQVRDWLAIQKEKSIIPKRDELLVETFPFRKRFFMVMYPFEGRLAHQTLGMLLTRRLE RAGAKPMGFVATDYSLAIWAMEDIGRRLKSRRLSLAELLDEDMLGDDLEAWLDESFML KRTFRNCAVISGLIERRHPGKEKTGRQVTVSADLIYDVLRSHEPDHILLEATRRDAAA GLLDIGRLGDMLKRIKGHTTHRALEHVSPLAVPVMLEIGRETVAGEAMDQVLAEAADE LIAEAMS" misc_feature 443030..445462 /gene="lhr" /locus_tag="AGROH133_03785" /note="Lhr-like helicases [General function prediction only]; Region: Lhr; COG1201" /db_xref="CDD:31394" misc_feature 443123..443602 /gene="lhr" /locus_tag="AGROH133_03785" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 443150..443164 /gene="lhr" /locus_tag="AGROH133_03785" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 443492..443503 /gene="lhr" /locus_tag="AGROH133_03785" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature 443744..444115 /gene="lhr" /locus_tag="AGROH133_03785" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(443816..443827,443894..443899,443972..443980) /gene="lhr" /locus_tag="AGROH133_03785" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(443996..443998,444059..444061,444071..444073, 444083..444085) /gene="lhr" /locus_tag="AGROH133_03785" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 444830..445405 /gene="lhr" /locus_tag="AGROH133_03785" /note="DEAD/H associated; Region: DEAD_assoc; pfam08494" /db_xref="CDD:149517" gene 445542..446270 /locus_tag="AGROH133_03786" /db_xref="GeneID:10266200" CDS 445542..446270 /locus_tag="AGROH133_03786" /note="Metallophosphoesterase; Predicted ICC-like phosphoesterases" /codon_start=1 /transl_table=11 /product="phosphoesterase protein" /protein_id="YP_004277750.1" /db_xref="GI:325291886" /db_xref="GeneID:10266200" /translation="MLSRLTLSDRFSNGFECLGSETAINGVAAWCDPLGGLYLPDLSL LVVSDLHLEKGAAFARRGRMLPPYDTIATLKILSSLVSRYDPKIVVSLGDNFHDRVGS EHLPLMLRELIREMARGRDWIWINGNHDPDGTVDLPGSSVDEMFYGNLVFRHEPKVGD AAGEIAGHLHPSATVRRREKTVRRPCFATDGSRLLMPAFGVMSGGLDLRHKAMRGLFD HTALVAHLMGRDRIYSVRFSNLLG" misc_feature 445698..446165 /locus_tag="AGROH133_03786" /note="Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain; Region: MPP_PF1019; cd07391" /db_xref="CDD:163634" misc_feature order(445821..445823,445923..445928,446001..446003, 446043..446045,446049..446051) /locus_tag="AGROH133_03786" /note="putative active site [active]" /db_xref="CDD:163634" misc_feature order(445821..445823,445923..445925,446001..446003, 446043..446045,446049..446051) /locus_tag="AGROH133_03786" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163634" gene complement(446289..446744) /locus_tag="AGROH133_03787" /db_xref="GeneID:10266201" CDS complement(446289..446744) /locus_tag="AGROH133_03787" /note="Universal stress protein family; Universal stress protein UspA and related nucleotide-binding proteins" /codon_start=1 /transl_table=11 /product="Universal stress protein; UspA family" /protein_id="YP_004277751.1" /db_xref="GI:325291887" /db_xref="GeneID:10266201" /translation="MKRRNVMFKHILIPTDGSPLAQIAIDQGFALAREAGAKVTVVTV SEPFHVIASDVEDIAAIAEEEFHRCEEAEHFLRDTQAHAASMGLDCEALLARAGRPDE AIVEIANRTGCDLIAMASHRRRSFVEMLVGSVTAKVLKNSKIPVLVYRQ" misc_feature complement(446301..446717) /locus_tag="AGROH133_03787" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature complement(order(446340..446351,446379..446384, 446388..446393,446613..446615,446697..446705)) /locus_tag="AGROH133_03787" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene complement(446887..447711) /locus_tag="AGROH133_03788" /db_xref="GeneID:10266202" CDS complement(446887..447711) /locus_tag="AGROH133_03788" /note="Conserved hypothetical protein CHP02186, transmembrane protein (Alph_Pro_TM)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277752.1" /db_xref="GI:325291888" /db_xref="GeneID:10266202" /translation="MTHRLLLCAFLLIGSCLAFTASAQTPPLALPPGTQQRSLQENIE IGASTTEIPITSDFRGADFTLFGALNNTDQLLLAIGQYDIVVTLEGPSDYMTVRKKER VAGIWINTSAITFTPLPESYSMASTRDISAVASPGTLRAMGLGVEHLSLKSAVFSGVP DNVFDFQEAYRRLRLSSGIYRNDTTGVRLERTGLFWATLRLPANVPNGVHTARAYLFK SGNFIAQRELKLRVVKTGMEQAITDAAHQTPLAYGALCVLLAVVTGWSASIIFRKD" misc_feature complement(446890..447681) /locus_tag="AGROH133_03788" /note="Putative transmembrane protein (Alph_Pro_TM); Region: Alph_Pro_TM; cl09826" /db_xref="CDD:158718" gene complement(447708..448634) /locus_tag="AGROH133_03791" /db_xref="GeneID:10266203" CDS complement(447708..448634) /locus_tag="AGROH133_03791" /note="Protein of unknown function DUF81; Predicted permeases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277753.1" /db_xref="GI:325291889" /db_xref="GeneID:10266203" /translation="MTVYLPIAELSVNIFIILGMGAAVGFLSGMFGVGGGFLITPLLI FYNIPPVVAVATGANQVVASSVSGSITHFRRGTLDVKLGSVLLVGGLVGATVGVWIFS FLRSIGQLDLIVSLLYVILLGTVGTLMLKESISALRRAARNETVTLRRPGHHNWVHRL PLKMRFKKSKIYLSIIPVVTLGFGIGILTSIMGVGGGFIMVPAMIYLLRIPTNVVVGT SLFQIIFVTAYTTIVQAATNYSVDVVLAFILMVAGVIGAQYGVRVGQKLRGEQLRALL ALLVLAVALRLAVALVVRPEDLFSVAVGGLGY" misc_feature complement(447822..448520) /locus_tag="AGROH133_03791" /note="Predicted permeases [General function prediction only]; Region: COG0730; cl00498" /db_xref="CDD:186038" gene complement(448898..452719) /locus_tag="AGROH133_03800" /db_xref="GeneID:10266204" CDS complement(448898..452719) /locus_tag="AGROH133_03800" /note="Tetratricopeptide-like helical, peptidoglycan binding domain; FOG: TPR repeat" /codon_start=1 /transl_table=11 /product="hemaglutinin protein" /protein_id="YP_004277754.1" /db_xref="GI:325291890" /db_xref="GeneID:10266204" /translation="MQQTPGTPDGSEASEKMNGLRSKNQSPSDRSSLDALNRTIEGLE ARIEGLMSQKFPRDPRATIAEPKNEAHAAPREPRATVTPPQLDPVNEIRQRQRLLEAS FQRPQEPVARPERTITRPLAPEYRPNDVQNAAANPAPRARSIPPYQEQQRNDAALQEI AQALVNLRHELKHDISEGVAREAQGLRAEIRNIRAIAEDQQFIGDLRDDIARLAGSID QLGNLASPDAYGLRNEFDDLRLTIDQLAREDSVHRIESRWNTVEDTLRGFDTASLQDE IVSLAYRLDDIKTQLGGMSNNPAVRVLEEKLITIASAVEQLGKHMQPNEAAFTEQFSG LDQRLDEISRAIAATGARSNNAQATDNALAQRLETRLNGLAEQLGDINRIAAAKPDPA VDLTARLETLAAKIDELSTARDAAQLHERLDQLSLLLERSQRPSQEAELTSFLSDISR KIDALDHGTVNDGLAERLDTLSRRIEDLDYRYSQPQPVAGFNEGTFSRLEERLGDIAA RLDETAHAAPADSGTLLSLENQIAHLSSLISQPGHHQPAGMSPELDARMSAIEDYMAS NDEYIIEAARQAAEAVLDAFTRNNVSSGANLADMTMLTDLATDLRSLEALSRNTEERT HRTFEALHETLVQIAGRLDSLDNRAPAPAYREEAAPRNVAQHMITPAREDVAMPAAIF PQEGYITEEQLILEDTRDVGENGADAMAIVPPAAAKPAKAEKKSLLAGLTKRFKTGTA KTAKSAEEPVSATTTRTQVEPAPSLDPIDVLPAGQENELLEPGSGAPDIKKILERVRA SQVASSGKAADAEGRTDFIAAARRAAQAAAMETSPEKLETGKKNRKPDASALSRYRRP LLLGIGAILLAMMAMPLVKTMMGGAEAPAPVIEEKMGDAPVSALPETGDKAVTIPSEL AIDPQEAASADSIENAAPSENTIDPRTIGGAPLANEPPVADAPAVDAATSGTVAQSEP QAPVQAATTAAAAQGAIAVPAGIEPASLAEAAAKGDTQALYEIAARYTEGRGLAADRT EAAKWYKLAADRGLAPAQYRLANLYEKANGVERNLSEAKRYYTLAAEQGNAGAMHNLA VLLASDAAGQPDFTTAAQWFIKASELGVRDSQFNLAILYARGSGVKQDIEESYKWFSI AAKDGDTDAAQKRDEVAGAMNPQQLQSARAKADAWKVKPLSEDANSVNPPEEWAGKDG VKTASVDMEKAIRNIQAILNKNGFDAGQPDGKLGKNTVTAIKDFQKSVGQTPDGRITN ELVTALLARNK" misc_feature complement(451283..>452278) /locus_tag="AGROH133_03800" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:162739" misc_feature complement(449060..>449734) /locus_tag="AGROH133_03800" /note="FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790" /db_xref="CDD:31133" misc_feature complement(449591..449692) /locus_tag="AGROH133_03800" /note="Sel1 repeat; Region: Sel1; cl02723" /db_xref="CDD:194424" misc_feature complement(449480..449587) /locus_tag="AGROH133_03800" /note="Sel1 repeat; Region: Sel1; cl02723" /db_xref="CDD:194424" misc_feature complement(449264..449368) /locus_tag="AGROH133_03800" /note="Sel1 repeat; Region: Sel1; cl02723" /db_xref="CDD:194424" misc_feature complement(448916..449077) /locus_tag="AGROH133_03800" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene 452601..452849 /locus_tag="AGROH133_03801" /db_xref="GeneID:10266205" CDS 452601..452849 /locus_tag="AGROH133_03801" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277755.1" /db_xref="GI:325291891" /db_xref="GeneID:10266205" /translation="MVRLRASRDDLSLGLWFFDRNPFIFSLASLPSGVPGVCCNGYPP DNAVAQHAAILEPVFAPMRENASIDEAVTSCRRIHETW" gene 453048..454844 /gene="acd" /locus_tag="AGROH133_03802" /db_xref="GeneID:10266206" CDS 453048..454844 /gene="acd" /locus_tag="AGROH133_03802" /EC_number="1.3.99.-" /note="Acyl-CoA dehydrogenase/oxidase, middle and N-terminal; Acyl-CoA dehydrogenases" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase" /protein_id="YP_004277756.1" /db_xref="GI:325291892" /db_xref="GeneID:10266206" /translation="MPVYKAPVKDTLFILNDVLGLERYNNLPGFEDATPDMIEAITGE AAKLAEERLFPLNLSGDQQGCKRADDGSVSVPDGFKEAYDAYCEGGWIGLAVPPEFGG QGLPYTLHAAIGEYMSSANLSLMMYPGLTQGAIAAVLVHGTQEQKETYLPKMVEGTWS GTMNLTEPHCGTDLGLLRTKAVPQGDGSYKISGQKIFISAGEHSMTDNIVHLVIARIE GAPEGTKGISLFIVPKFLVKEDGSLGERNGVTCGAIEHKMGIHGNATCVMNYDDATGY LLGAENKGLSAMFVMMNEARLGVGLQGLSVGEIAYQNAVEYARERIQGRSLSGAKFPD KKADPIIVHPDIRRTLMTIKAYNEAGRAFLLWTALQSDIAHRSTDEKERQTADDLLGL VTPILKGVLTDKGFDHAVMAQQVFGGHGYIEEHGMSQYVRDARITMIYEGANGIQALD LVGRKLGMNGGRAVMALFKEIGDFCEENRPDEKLSLYTKGLKKGLNDLQAATMWFMQN AMAKPDNAGAGSTDYMHLFGIVVLGYMQARMAKAASEALAAGSTSDEDFLKTKLVTAK FYMERIMPETALRKARIETGADTMMELAAEAF" misc_feature 453051..453149 /gene="acd" /locus_tag="AGROH133_03802" /note="Acyl-CoA dehydrogenase N terminal; Region: AcylCoA_DH_N; pfam12418" /db_xref="CDD:193019" misc_feature 453057..454832 /gene="acd" /locus_tag="AGROH133_03802" /note="acyl-CoA dehydrogenase; Provisional; Region: PTZ00456" /db_xref="CDD:185635" misc_feature 453177..454418 /gene="acd" /locus_tag="AGROH133_03802" /note="Putative acyl-CoA dehydrogenases similar to fadE5; Region: ACAD_fadE5; cd01153" /db_xref="CDD:173842" misc_feature order(453534..453536,453540..453545,453558..453563, 453636..453638,453642..453644,454353..454355, 454374..454376,454380..454382) /gene="acd" /locus_tag="AGROH133_03802" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:173842" misc_feature order(453561..453563,453720..453722,454368..454373) /gene="acd" /locus_tag="AGROH133_03802" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173842" misc_feature 454368..454373 /gene="acd" /locus_tag="AGROH133_03802" /note="catalytic residues [active]" /db_xref="CDD:173842" misc_feature 454443..454832 /gene="acd" /locus_tag="AGROH133_03802" /note="Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806" /db_xref="CDD:193282" gene 454877..456085 /gene="fadA" /locus_tag="AGROH133_03803" /db_xref="GeneID:10266207" CDS 454877..456085 /gene="fadA" /locus_tag="AGROH133_03803" /EC_number="2.3.1.16" /note="Thiolase, C-terminal domain, AcCoA-C-Actrans: acetyl-CoA acetyltransferases; Acetyl-CoA acetyltransferase" /codon_start=1 /transl_table=11 /product="acetyl-CoA C-acyltransferase protein" /protein_id="YP_004277757.1" /db_xref="GI:325291893" /db_xref="GeneID:10266207" /translation="MTDVYIYDHVRTPRGRGKKDGSLHEVPSVRLAAKTLEAIRDRNG LDTSAVDDIIMGCVDPVMDAGAVIPKAAAFEAGYSNKAPGMQISRFCASGLDAINFAA GKVKAGSDDIVIAGGVESMSRVGMGMSGGAWYMDPSVNFPAFFMPQGVSADLIATKYG FSRDDVDAYAVESQKRAAHAWEKGYFNKSVIPVKDRNGLTILDRDEHMRPGTDMQALA SLNPSFQMPGEMGGFEAVGIMAHPEVERINYVHHAGNSSGIVDGAAAVLVGSKAGGEA MGVKPRARIRAFANIGSDPALMLTGPVDVTEKLLKKTGMSLADIDLFELNEAFAAVVL RYMQAFDISHERMNVNGGAIAMGHPLGATGAMILGTVLDELERRDLNTALVTLCIGAG MGTATVIERV" misc_feature 454877..456082 /gene="fadA" /locus_tag="AGROH133_03803" /note="acetyl-CoA acetyltransferase; Validated; Region: PRK08242" /db_xref="CDD:181315" misc_feature 454889..456079 /gene="fadA" /locus_tag="AGROH133_03803" /note="Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751" /db_xref="CDD:29411" misc_feature order(454949..454951,455030..455032,455075..455077, 455084..455086,455096..455098,455129..455140, 455162..455164,455183..455188,455195..455197, 455240..455242,455738..455740,455744..455746, 455750..455752,455810..455812,456047..456052) /gene="fadA" /locus_tag="AGROH133_03803" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29411" misc_feature order(455147..455149,455948..455950,456038..456040) /gene="fadA" /locus_tag="AGROH133_03803" /note="active site" /db_xref="CDD:29411" gene 456273..458489 /gene="fadB" /locus_tag="AGROH133_03804" /db_xref="GeneID:10266208" CDS 456273..458489 /gene="fadB" /locus_tag="AGROH133_03804" /EC_number="4.2.1.17" /EC_number="1.1.1.35" /note="Crotonase, core, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; 3-hydroxyacyl-CoA dehydrogenase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase" /protein_id="YP_004277758.1" /db_xref="GI:325291894" /db_xref="GeneID:10266208" /translation="MSTYTNFTIETDADGVALVTWDMPEKSMNVFTSEVMDELNAIVD ATVADAAVKGVVFTSGKSTFSGGADLSMIKSMFSFYNDEKAKDPDQAAAKLFELVGRM TGLFRKLETNGKPWVSAINGTCMGGAFELSLACHGRVASNAKSLKIALPEVKVGIFPG AGGTQRVPRLTDAQSALQMMTTGQSLTGARAKAMGLVHQVVDPDQLISAAKQMIKDGL KPVAPWDEKGFKAPGGGIWTPAAAQLWPAAPAILRRESAGNYPAALAILKCVYEGLQL PFDTALKVEQRYFTEILRSKEAFGMIRSLFVSMQELGKGARRPSGQPKTEFRKVGVVG AGFMGAAVAYVTAAAGIPVTLVDRDQEAADKGKGHCEESVKAAIGKGRLTQDEGKALL DLVTPTADYAALSDADLVIEAVFEDRDVKKAVIEAVEAVLPQGAIFASNTSTLPITGL AQNSKRPVDFIGIHFFSPVEKMMLTEVILGKETGDKALAVALDYVAKIRKTPIVVNDT RGFFVNRCVLRYMAESYDMLIEGVPPAMIENAAKFAGMPVGPLALNDEVAIDLSYKIL KATVADLGEKAVDPRHMELVKKLVEGEGRFGRKNAKGFYDYPPKPAKKSLWPGLKDLY PQQKPEDVDMEVLKQRFLVTVALEAARTVEEGIVTDPREADVGSILGFGFAPYTGGAL SYIDGMGVKTFVALAEKLSETYGPRFKPTPLLKDMAAKGETFYGRFDPYGSTAKAA" misc_feature 456273..458453 /gene="fadB" /locus_tag="AGROH133_03804" /note="multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154" /db_xref="CDD:183002" misc_feature 456312..456920 /gene="fadB" /locus_tag="AGROH133_03804" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(456354..456356,456360..456362,456456..456458, 456468..456482,456639..456641,456645..456653, 456723..456728,456735..456737) /gene="fadB" /locus_tag="AGROH133_03804" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(456474..456476,456651..456653) /gene="fadB" /locus_tag="AGROH133_03804" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(456591..456593,456615..456617,456678..456689, 456729..456740,456756..456758,456762..456770, 456774..456779,456792..456797,456801..456806, 456810..456815,456822..456824,456855..456857, 456864..456866,456909..456911,456918..456920) /gene="fadB" /locus_tag="AGROH133_03804" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" misc_feature 457320..457796 /gene="fadB" /locus_tag="AGROH133_03804" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 457800..458093 /gene="fadB" /locus_tag="AGROH133_03804" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" misc_feature 458190..458453 /gene="fadB" /locus_tag="AGROH133_03804" /note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725" /db_xref="CDD:189688" gene 458659..459081 /locus_tag="AGROH133_03805" /db_xref="GeneID:10266209" CDS 458659..459081 /locus_tag="AGROH133_03805" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277759.1" /db_xref="GI:325291895" /db_xref="GeneID:10266209" /translation="MKTSLRSHGFDKPSDLDDHLAELDEEAAEKEAEKPAVREARASA TVDQSIRAELDELRKQLEKLRRDVKKLESASHPTRHKPTDIRHEKDHENSRLMMVVRS VAVTSLASRIFASSPVMAALVAVVPFALGLAARRREGA" gene 459367..459442 /locus_tag="AGROH133_03807" /db_xref="GeneID:10266210" tRNA 459367..459442 /locus_tag="AGROH133_03807" /product="tRNA-Phe" /anticodon=(pos:459400..459402,aa:Phe) /db_xref="GeneID:10266210" gene complement(459689..460033) /gene="phaG" /locus_tag="AGROH133_03808" /db_xref="GeneID:10266211" CDS complement(459689..460033) /gene="phaG" /locus_tag="AGROH133_03808" /note="subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Multisubunit Na+/H+ antiporter, MnhG subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit G" /protein_id="YP_004277760.1" /db_xref="GI:325291896" /db_xref="GeneID:10266211" /translation="MNNAAEFPLWAAILVAFFVLLGASLTLIGTIGFAKLNSFYERLH APTLGTSWGTGGIVMASIIYFSVSGDRFAFHEIFIGIFVTVTTPVSLMLLGRAALYRD RAEQNTDNREHL" misc_feature complement(459692..460033) /gene="phaG" /locus_tag="AGROH133_03808" /note="Na+/H+ antiporter subunit; Region: PhaG_MnhG_YufB; cl00583" /db_xref="CDD:197412" gene complement(460030..460311) /gene="phaF" /locus_tag="AGROH133_03813" /db_xref="GeneID:10266212" CDS complement(460030..460311) /gene="phaF" /locus_tag="AGROH133_03813" /note="subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; Multisubunit Na+/H+ antiporter, MnhF subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit F" /protein_id="YP_004277761.1" /db_xref="GI:325291897" /db_xref="GeneID:10266212" /translation="MSSIILFWSFSLAQLMLAIAMTISVYRIAIGPRAQDRVLGVDTL YVNAMLLLLTFGLRTGNDIYFEASLLIAILGFVSTVALSKFMMRGEVIE" misc_feature complement(460033..460299) /gene="phaF" /locus_tag="AGROH133_03813" /note="Multiple resistance and pH regulation protein F (MrpF / PhaF); Region: MrpF_PhaF; cl09154" /db_xref="CDD:186841" gene complement(460308..460796) /gene="phaE" /locus_tag="AGROH133_03817" /db_xref="GeneID:10266213" CDS complement(460308..460796) /gene="phaE" /locus_tag="AGROH133_03817" /note="subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; Multisubunit Na+/H+ antiporter, MnhE subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit E" /protein_id="YP_004277762.1" /db_xref="GI:325291898" /db_xref="GeneID:10266213" /translation="MISRVLPYPLLTVSLIIFWMTINSFSAGHLLLGTGVALIASWAM ASLRPAKPRIRNWHKLVKLIAIVLYDIVLSNISVVKIILFQRERDRKSGFLAVPLDIR DPMGLAVLATILTSTPGSAWLEYNSSQGTLLLHVLDDEDEAAWISLIKNRYEKLLMEI FE" misc_feature complement(460311..460796) /gene="phaE" /locus_tag="AGROH133_03817" /note="Na+/H+ ion antiporter subunit; Region: MNHE; cl00807" /db_xref="CDD:186198" gene complement(460793..462439) /gene="phaD" /locus_tag="AGROH133_03821" /db_xref="GeneID:10266214" CDS complement(460793..462439) /gene="phaD" /locus_tag="AGROH133_03821" /note="subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit D" /protein_id="YP_004277763.1" /db_xref="GI:325291899" /db_xref="GeneID:10266214" /translation="MMSFPFHIVIAPILVPLITAALLLFFDERQRVAKAAISLASTAI LLVVAILLFREVNSTVNTEIAAVVSSGVYLLGNWPAPFGIVLVADRLSGLMVLLTALL AIPSLIYSLAKWHKAGAHFHSLFQMMLMGVNGAFLTGDLFNLFVFFEVMLAASYGLLL HGSGQQRVKAGLHYIAINLVAALFFLIGVSLIYGVTGTLNMGDLAHRIDGLNPDQRML LETGAAVLGIAFLVKAGMWPLNFWLPSAYGSASAPVGGLFAIMSKVGIYVIARLSFLL FGQTAGESAGFGHDALLVGGIATIIFGAIGVLASQALGRLAGFSVLVSSGTLLAAMGT GNPTVAAGALYYLVSSTLTISAFFMLIELVERGQDAGANVLAVTMEAYGEGEEEEEEE EVGVTMPGTMAVLGACFAACGILLAGLPPLSGFIAKFSMLTAILNPSGLGANDTVSTL SWWLVFLIVFAGFASLISMTRAGIRTFWASLEGTVPRVLVIEIAPIMLLLGLTLAMTV QAGPVMRYMQETARILDLPASYIQGVISAPRAGTNPEAQP" misc_feature complement(460799..462436) /gene="phaD" /locus_tag="AGROH133_03821" /note="putative monovalent cation/H+ antiporter subunit D; Reviewed; Region: PRK12666" /db_xref="CDD:183666" misc_feature complement(461144..462025) /gene="phaD" /locus_tag="AGROH133_03821" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" gene complement(462436..462771) /gene="phaC" /locus_tag="AGROH133_03837" /db_xref="GeneID:10266215" CDS complement(462436..462771) /gene="phaC" /locus_tag="AGROH133_03837" /note="subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Multisubunit Na+/H+ antiporter, MnhC subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit C" /protein_id="YP_004277764.1" /db_xref="GI:325291900" /db_xref="GeneID:10266215" /translation="MELILSIGIGIMTGSGVWLILRPRTYQVIVGLSLLSYAVNLFIF GVGGIKTNAPPVLVNGVDSSTLADPVPQALVLTAIVIGFATTALFLVVLLAARGLTGT DHVDGRESK" misc_feature complement(462442..462771) /gene="phaC" /locus_tag="AGROH133_03837" /note="NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; Region: Oxidored_q2; cl00492" /db_xref="CDD:186032" gene complement(462771..465689) /gene="phaA" /locus_tag="AGROH133_03841" /db_xref="GeneID:10266216" CDS complement(462771..465689) /gene="phaA" /locus_tag="AGROH133_03841" /note="subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit A" /protein_id="YP_004277765.1" /db_xref="GI:325291901" /db_xref="GeneID:10266216" /translation="MTLATVLPFIIALPFVGALITAFMPREGAAASAAYVASAVALFG LVGSILLYPNVSGGGVLKYDVEWLPQLGLNFTLRLDGFAWIFAILITGIGLLVVLYAR YYMSAQDPIPRFFAFLLAFMGSMLGIVLSGNVILLSIFWEMTSIFSFLLIGYWHQNAG ARDGARMALTVTGIGGFSLLAGLLILGHMAGSYDLDKIIAAGADIRAHSLYLPALILI LGGALTKSAQFPFHFWLPNAMAAPTPVSAYLHSATMVKAGVFLLARFWPVLAGTPEWF WLVGAAGVITLLLGAYFAMFQQDLKGLLAYSTISHLGLITTLLSLGSPLAAVAAIFHM VNHATFKASLFMAAGIIDHETGTRDMRRLSGLYTYMPATATLAMAASAAMAGVPLFNG FLSKEMFFAEAVETHADSLLDRALPYVATLSGAFAVAYSLRFIHTVFFGPKPVDLPNP NPHEPPRWMRFPIEFLVFACLIVGIVPSLSIGPFLHSAVLSVLGPQTPVYSLSIWHGF NLPLIMSIAALGGGVAIYALLGGYFSRCDDGPPIFRHLRGQRIFERILVTVSWKWARW LESTLGTRRLQPQLRLLILVAILAGFSPLFLSEFSLSLPRVTSFDPIFAILWLIGMIA ALGAAWQAKYHRLAALIMLGVSGLVTCLTFVWLSAPDLAITQLLVEIVTTVLILLGLR WLPKRFEKVDSSDELPAQLRRARDFLLAAASGIGMSVIAYAVMTLPVPNAIATYFLER AYSEGGGTNVVNVILVDFRGFDTFGEISVLAIVALTVFALLRRFRPAHESIGVPEQQQ MQNAFDAERPDRSKGDTVRDYLYVPSIVMQWMFPVIVTFSIFLFIRGHDLPGGGFAAG ITMAIAFLLQYLAGGARWAEDRIRILPLRWMGFGLLMAAATGMGSWYFGYPFLTSYFQ YTEIPYIGKMPTASALLFDLGVFSLVVGSTVLILIALAHQSLRNYRVRTPEAAKAEDV " misc_feature complement(462780..465674) /gene="phaA" /locus_tag="AGROH133_03841" /note="putative monovalent cation/H+ antiporter subunit A; Reviewed; Region: PRK12648" /db_xref="CDD:183648" misc_feature complement(464481..465299) /gene="phaA" /locus_tag="AGROH133_03841" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" misc_feature complement(463332..463844) /gene="phaA" /locus_tag="AGROH133_03841" /note="Domain related to MnhB subunit of Na+/H+ antiporter; Region: MnhB; cl00676" /db_xref="CDD:186140" misc_feature complement(462849..463169) /gene="phaA" /locus_tag="AGROH133_03841" /note="Domain related to MnhB subunit of Na+/H+ antiporter; Region: MnhB; cl00676" /db_xref="CDD:186140" gene complement(465796..466182) /locus_tag="AGROH133_03866" /db_xref="GeneID:10266217" CDS complement(465796..466182) /locus_tag="AGROH133_03866" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277766.1" /db_xref="GI:325291902" /db_xref="GeneID:10266217" /translation="MLRMEKCRCSRRHPQVLIGLVVASLLVIIGFQAPSGIKAISKTS RLERLQTADLSHSPSPRDKDCTTGDDHGCKAHNGAPGLRPVGFPSTILRIVADAKPAV TPVAIAPQTFRDFANVIPRAPPHIIS" gene 466678..468285 /gene="icpA" /locus_tag="AGROH133_03870" /db_xref="GeneID:10266218" CDS 466678..468285 /gene="icpA" /locus_tag="AGROH133_03870" /note="Bacterial chemotaxis sensory transducer, methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004277767.1" /db_xref="GI:325291903" /db_xref="GeneID:10266218" /translation="MGQDLPSEQARRSAGASLAGRLRFAGLDETQSDFLRNYRSMLEP YVKAGLRDVMNRFQSMPDCSPSFESENQLDRLHDLQSSHWSVLTDARFDGLYAERVKV LSDNAGRMGLDPRWQIASHAVVLEHLLGGLVTEHAPRSILPGNRKKSRELAEAVKNVV RLVMVDTEIAVSLRFNELRLRHGRELAEQRDNDRSEAARLLGEALTAFAAGDLQARIG GDVPDAYRDVAATFNAALETIGASLTSAQNSIGEAEALSARFADIGRSMAERSRQQAA ALAETSRAIQTMIGDVAENGARISAAETAVSHAREAAVESGKAIGEAINAMSDIEQSA EQIGRIIGTIDEIAFQTNLLALNAGIEAARAGDSGRGFAVVAQEVRALAQRSADAARE IKSLVGSTKKQVEGGVHMVNRTQDAIGGVVRQVSGINDMITEVSRHAAEHAGELQSVA ADIGEQQRQADRNLADMGNGSSEADTLHTVILELGRTIREFRIARQGQAAAVAATARQ DTSFVARVDNRTDYGQDYQQFRRQGVM" misc_feature 466747..467193 /gene="icpA" /locus_tag="AGROH133_03870" /note="superfamily containing globins and truncated hemoglobins; Region: globin_like; cl00280" /db_xref="CDD:153650" misc_feature order(466837..466839,466864..466866,466873..466878, 466903..466905,466912..466917,466993..466998, 467029..467031,467038..467040,467173..467175) /gene="icpA" /locus_tag="AGROH133_03870" /note="heme-binding site [chemical binding]; other site" /db_xref="CDD:29980" misc_feature 467416..468150 /gene="icpA" /locus_tag="AGROH133_03870" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 467578..468150 /gene="icpA" /locus_tag="AGROH133_03870" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 468285..468584 /gene="cheX" /locus_tag="AGROH133_03871" /db_xref="GeneID:10266219" CDS 468285..468584 /gene="cheX" /locus_tag="AGROH133_03871" /note="Sulphate transporter/antisigma-factor antagonist STAS; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)" /codon_start=1 /transl_table=11 /product="chemotaxis protein CheX" /protein_id="YP_004277768.1" /db_xref="GI:325291904" /db_xref="GeneID:10266219" /translation="MAARKAAEATLKLSPVLDLNEASALHGKLMTLRGAPLSVDASEV ERIGALCAQVLMAGAKSWEEDGKPFGFARVSDAFDKTMKLIGVEIDHLLLKEIKK" misc_feature 468315..468542 /gene="cheX" /locus_tag="AGROH133_03871" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors; Region: STAS; cl00604" /db_xref="CDD:153881" gene 468581..468946 /gene="cheY1" /locus_tag="AGROH133_03872" /db_xref="GeneID:10266220" CDS 468581..468946 /gene="cheY1" /locus_tag="AGROH133_03872" /note="CheY-like, Response regulator receiver domain; FOG: CheY-like receiver" /codon_start=1 /transl_table=11 /product="chemotaxis receiver protein" /protein_id="YP_004277769.1" /db_xref="GI:325291905" /db_xref="GeneID:10266220" /translation="MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQ SNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGW IVKPFDPAKLIDAIERVTA" misc_feature 468593..468931 /gene="cheY1" /locus_tag="AGROH133_03872" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 468596..468937 /gene="cheY1" /locus_tag="AGROH133_03872" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(468605..468610,468737..468739,468761..468763, 468827..468829,468884..468886,468893..468898) /gene="cheY1" /locus_tag="AGROH133_03872" /note="active site" /db_xref="CDD:29071" misc_feature 468737..468739 /gene="cheY1" /locus_tag="AGROH133_03872" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(468746..468751,468755..468763) /gene="cheY1" /locus_tag="AGROH133_03872" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 468893..468901 /gene="cheY1" /locus_tag="AGROH133_03872" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 468963..471230 /gene="cheA1" /locus_tag="AGROH133_03873" /db_xref="GeneID:10266221" CDS 468963..471230 /gene="cheA1" /locus_tag="AGROH133_03873" /EC_number="2.7.3.-" /note="Signal transducing histidine kinase, homodimeric domain; Chemotaxis protein histidine kinase and related kinases" /codon_start=1 /transl_table=11 /product="chemotaxis protein CheA" /protein_id="YP_004277770.1" /db_xref="GI:325291906" /db_xref="GeneID:10266221" /translation="MDMNEIKEIFFQECEEQLAELESGLLKLNDGDRDPETVNAVFRA VHSIKGGAGAFGLDDLVAFAHVFETTLDCVRSNKLEPTQDVLKVMLRSADVLADLTNA ARDGGSVDESRTRGLVKELEALANGETVHASAPVAAPVVAKMPEPVAPKPTDDSGFEP IPFSFSDFADETTPLMETPSFQITFKPHASLYSKGNEAALLLRDLSRIGEMSVNCDLS ELPSLDKLDPEASYFSWTVLISTDKGEEGIRSVFEFAEWDCDLEITPILSETAADAEE LPMIPVPFDLSALDGDAEGEPAVVTAGAEEPYVAAVVEAAVATTQIAQSVNAAIEKRE AAAAPAAAQANANAAANASAGQTIRVDLDRVDRLINLVGELVINQAMLSQSVIENDAS GTSAVNMGLDELQQLTREIQDSVMAIRAQPVKPVFQRMSRIVREVADMIGKQIRLVTE GENTEVDKTVIDKLAEPLTHMIRNAVDHGIETPEKREAAGKNPEGTIKLSAKHRSGRI LIELQDDGAGINRERVRQKAIDNDLIAADANLTDEEIDNLIFAPGFSTADKISDISGR GVGMDVVKRSIQALGGRINISSRPGLGSTFTMSLPLTLAVLDGMVVTVAGQTLVVPLT AIVETLQPEAKNIHSFGANQRLISIRNSFCPLVDVGRVLNFRPTQADPVEGVALLVES EGGGQRALMVDAIQGQRQVVIKSLEANYTHVPGIAAATILGDGRVALILDVDAIVSAS RGQPLKQEMSLAATG" misc_feature 468963..471188 /gene="cheA1" /locus_tag="AGROH133_03873" /note="Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]; Region: CheA; COG0643" /db_xref="CDD:30988" misc_feature 468969..469259 /gene="cheA1" /locus_tag="AGROH133_03873" /note="Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088" /db_xref="CDD:28972" misc_feature order(469098..469100,469107..469112,469155..469157, 469164..469166) /gene="cheA1" /locus_tag="AGROH133_03873" /note="putative binding surface; other site" /db_xref="CDD:28972" misc_feature 469098..469100 /gene="cheA1" /locus_tag="AGROH133_03873" /note="active site" /db_xref="CDD:28972" misc_feature 470028..470216 /gene="cheA1" /locus_tag="AGROH133_03873" /note="Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895" /db_xref="CDD:190468" misc_feature 470352..470762 /gene="cheA1" /locus_tag="AGROH133_03873" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(470370..470372,470382..470384,470391..470393, 470496..470498,470502..470504,470508..470510, 470514..470519,470661..470672,470718..470720, 470724..470726,470739..470744,470748..470750) /gene="cheA1" /locus_tag="AGROH133_03873" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 470382..470384 /gene="cheA1" /locus_tag="AGROH133_03873" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(470508..470510,470514..470516,470661..470663, 470667..470669) /gene="cheA1" /locus_tag="AGROH133_03873" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 470772..471170 /gene="cheA1" /locus_tag="AGROH133_03873" /note="CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731" /db_xref="CDD:29681" gene 471244..472152 /gene="cheR1" /locus_tag="AGROH133_03874" /db_xref="GeneID:10266222" CDS 471244..472152 /gene="cheR1" /locus_tag="AGROH133_03874" /EC_number="2.1.1.80" /note="CheR methyltransferase, SAM binding domain; methylase of chemotaxis methyl-accepting proteins" /codon_start=1 /transl_table=11 /product="chemotaxis protein methyltransferase" /protein_id="YP_004277771.1" /db_xref="GI:325291907" /db_xref="GeneID:10266222" /translation="MAALNLSDQRQSPDDVLASGEYPLTRRDLSEIAAMIYADAGIYL NDTKASLVYSRLSKHIRNLGLAGFREYCALVSSPDGAAARREMLSHLTTNFTRFFREN HHFEHLRDEVLPGLIARAKTGGRVRIWSAACSDGQEPYSIALTVLAMFPNAADYDFKI LATDIDPKILAQARAGVYDDNALETVSPAMRKQWFTEVDAGGRRKFRIDDKVKRLITF NELNLMTQWPFKGNFDVIFCRNVVIYFDEPTQMRIWTRFAGLLPEGGHLYIGHSERVS GDAKNLFDNTGITTYRHIGHTSGRKA" misc_feature 471316..471474 /gene="cheR1" /locus_tag="AGROH133_03874" /note="CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705" /db_xref="CDD:112515" misc_feature 471319..472122 /gene="cheR1" /locus_tag="AGROH133_03874" /note="Methyltransferase, chemotaxis proteins; Region: MeTrc; smart00138" /db_xref="CDD:128443" misc_feature 471523..472119 /gene="cheR1" /locus_tag="AGROH133_03874" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 472149..473204 /gene="cheB1" /locus_tag="AGROH133_03875" /db_xref="GeneID:10266223" CDS 472149..473204 /gene="cheB1" /locus_tag="AGROH133_03875" /EC_number="3.1.1.61" /note="regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; Chemotaxis response regulator containing a CheY- like receiver domain and a methylesterase domain" /codon_start=1 /transl_table=11 /product="protein-glutamate methylesterase" /protein_id="YP_004277772.1" /db_xref="GI:325291908" /db_xref="GeneID:10266223" /translation="MSALARVLVVDDSPTMRGLISAVLKADPEVEVVGQAGNAMEARA AIKQLNPDVVTLDIEMPEMNGLEFLEKIMRLRPMPVIMVSSLTHRGADASLAALEIGA FDCVGKPAPGDARPFGDLADKVKAAARSQHAAYRAARPEPVVAAQPTPVSDYRAGRKV VAIGSSTGGVEALIAVLQKFPANCPPTVITQHMPPTFTKSFAERLNRICAPVVEEATD GARLQTGKIYLAPGGERHLQISNRNAPCCRLIERDPVNGHRPSVDVLFDSVAELAGRN AVGVILTGMGRDGAAGLLKMRHAGARTVGQNEKTCVVYGMPRVAFELGAVELQLPLAS IGEEILKLTTARKEGAD" misc_feature 472164..473189 /gene="cheB1" /locus_tag="AGROH133_03875" /note="chemotaxis-specific methylesterase; Provisional; Region: PRK00742" /db_xref="CDD:179106" misc_feature 472170..472475 /gene="cheB1" /locus_tag="AGROH133_03875" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(472179..472184,472317..472319,472341..472343, 472398..472400,472461..472463,472470..472475) /gene="cheB1" /locus_tag="AGROH133_03875" /note="active site" /db_xref="CDD:29071" misc_feature 472317..472319 /gene="cheB1" /locus_tag="AGROH133_03875" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(472326..472331,472335..472343) /gene="cheB1" /locus_tag="AGROH133_03875" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 472470..472475 /gene="cheB1" /locus_tag="AGROH133_03875" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 472626..473174 /gene="cheB1" /locus_tag="AGROH133_03875" /note="CheB methylesterase; Region: CheB_methylest; pfam01339" /db_xref="CDD:144802" gene 473204..473593 /gene="cheY2" /locus_tag="AGROH133_03876" /db_xref="GeneID:10266224" CDS 473204..473593 /gene="cheY2" /locus_tag="AGROH133_03876" /note="CheY-like, Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="chemotaxis receiver protein" /protein_id="YP_004277773.1" /db_xref="GI:325291909" /db_xref="GeneID:10266224" /translation="MSLAEKIKVLIVDDQVTSRLLLSDALTQLGFKQITAAGDGEQGL KIMEQQPHHLVISDFNMPKMDGLGFLHAVRANPTLKKAAFIILTAQGDRALVQKAAQL GANNVLAKPFTIDKMRAAIEAVFGSLK" misc_feature 473228..473569 /gene="cheY2" /locus_tag="AGROH133_03876" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 473231..473578 /gene="cheY2" /locus_tag="AGROH133_03876" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(473240..473245,473375..473377,473399..473401, 473465..473467,473522..473524,473531..473536) /gene="cheY2" /locus_tag="AGROH133_03876" /note="active site" /db_xref="CDD:29071" misc_feature 473375..473377 /gene="cheY2" /locus_tag="AGROH133_03876" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(473384..473389,473393..473401) /gene="cheY2" /locus_tag="AGROH133_03876" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 473531..473539 /gene="cheY2" /locus_tag="AGROH133_03876" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 473590..474135 /gene="cheD" /locus_tag="AGROH133_03877" /db_xref="GeneID:10266225" CDS 473590..474135 /gene="cheD" /locus_tag="AGROH133_03877" /EC_number="3.5.1.44" /note="catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; Chemotaxis protein; stimulates methylation of MCP proteins" /codon_start=1 /transl_table=11 /product="chemoreceptor glutamine deamidase CheD" /protein_id="YP_004277774.1" /db_xref="GI:325291910" /db_xref="GeneID:10266225" /translation="MIEAAAKRVHIIQGEYKVVSDPDVVMTTILGSCVAACLRDPVAG IGGMNHFLLPGTGNVTGGDATRYGVHLMELLINGLLKKGARRDRLEAKVFGGAKTIAS FSNVGEQNAIFAMQFLKDEGIPVISSSTGGDHGRKIEFWPVSGRARQHPLSGAETQKT VAMETRPVPAPKPVANDIEFF" misc_feature 473590..474132 /gene="cheD" /locus_tag="AGROH133_03877" /note="CheD chemotactic sensory transduction; Region: CheD; cl00810" /db_xref="CDD:193944" gene 474150..474533 /locus_tag="AGROH133_03878" /db_xref="GeneID:10266226" CDS 474150..474533 /locus_tag="AGROH133_03878" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277775.1" /db_xref="GI:325291911" /db_xref="GeneID:10266226" /translation="MQIANNTGTTPFEEALPDVLMRVVSELHDVAYLIERIEPQLLEA TSGELSSDGVKLLQGIDLAVQKTRGLAEFIDTVTGSIPGDWIVDVSTALSLVKLAEMQ KALGAAIRHGHSQPLDKVAGDFDLF" gene 474665..476347 /gene="fliF" /locus_tag="AGROH133_03879" /db_xref="GeneID:10266227" CDS 474665..476347 /gene="fliF" /locus_tag="AGROH133_03879" /note="the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; Flagellar biosynthesis/type III secretory pathway lipoprotein" /codon_start=1 /transl_table=11 /product="flagellar MS-ring protein" /protein_id="YP_004277776.1" /db_xref="GI:325291912" /db_xref="GeneID:10266227" /translation="MNLLNQIPQVLKNFAALGQTRLLMLGGVGILSMAIILAAALYVN RPAYETLYVGLEKSDLNKISIALAEAGLDFQVGTDGASLQVPVGLTSKARLLLAERGL PDSANAGYELFDNVGSLGLTSFMQEVTRVRALEGEISRSIQQIDGIAAARVHIVMPDV GNFRRGEQKPTASVMIRANATAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLAS GDDVTNAAMNRSLTLAQNVQQEITTNIDKALAPFLGMDNFRSSVTAQLNTDSRQIQET VYDPESRVERSVRTVKEDQKSQETQPDTAATVEQNVPQAAPQGGAGGPQSSDQSAKKE EQTNYEINSKTVATVKNGYTVEKISVAVVVNKGRIAKMVGEPVDQAKIDAYLAEMQKI VTSAAGVSSDRGDIVTLTAMDFLETQLLDEAASGPGIMEVLSRNSAGIINSLAFVAVA FLVVWLGVRPLVRTVTGNGAAAGQISQETAGLELPDFSPGMDAGAGGLMEGFGADFGF DSTDDLLAGGDSEGTFNRRVREGPERRLSRMVEISEERAAKILRKWAVEKAA" misc_feature 474665..476341 /gene="fliF" /locus_tag="AGROH133_03879" /note="flagellar MS-ring protein; Reviewed; Region: fliF; PRK06007" /db_xref="CDD:180348" misc_feature 474788..475336 /gene="fliF" /locus_tag="AGROH133_03879" /note="Secretory protein of YscJ/FliF family; Region: YscJ_FliF; cl01907" /db_xref="CDD:186494" misc_feature 475409..475906 /gene="fliF" /locus_tag="AGROH133_03879" /note="Flagellar M-ring protein C-terminal; Region: YscJ_FliF_C; pfam08345" /db_xref="CDD:192009" gene 476695..477450 /gene="visN" /locus_tag="AGROH133_03882" /db_xref="GeneID:10266228" CDS 476695..477450 /gene="visN" /locus_tag="AGROH133_03882" /note="Winged helix repressor DNA-binding, Bacterial regulatory proteins, luxR family; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LuxR family" /protein_id="YP_004277777.1" /db_xref="GI:325291913" /db_xref="GeneID:10266228" /translation="MGARGRRRLKVDVDIRRLSAKPMEGMGKPLPRDQLAKNVAASAA AGNVSGALDLLVTYAGASHYLLAREDLLEETGLKFIITSDWPFDLVRRLGAELANSQN RSSEMEKCLSLLQPRLLVLPDDVSVPFGIDRQYSALSFCVGRIRLSLLLLFPEHSVPS PDRLREIALLTGYCVSFGIASEAKAVRDIDLTERELECLFWIAEGKTSDEIAMILGIS RNTINNYITSVMRKTATKTRSEAIAYAVRNNLV" misc_feature 477265..477435 /gene="visN" /locus_tag="AGROH133_03882" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(477268..477276,477313..477321,477343..477348, 477352..477357,477361..477375,477406..477408) /gene="visN" /locus_tag="AGROH133_03882" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(477301..477303,477307..477309,477313..477315, 477406..477414,477421..477423,477430..477435) /gene="visN" /locus_tag="AGROH133_03882" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 477464..478210 /gene="visR" /locus_tag="AGROH133_03884" /db_xref="GeneID:10266229" CDS 477464..478210 /gene="visR" /locus_tag="AGROH133_03884" /note="Winged helix repressor DNA-binding; DNA-binding HTH domain-containing proteins" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LuxR family" /protein_id="YP_004277778.1" /db_xref="GI:325291914" /db_xref="GeneID:10266229" /translation="MVQTKDNEGTSQSSGMFYRSPVVTSRSDLFPKLVAMQKLVGARN FVVTKAAASGFPNKKKLTCELENWGMNAAEQSAQFIRAVGDILLDHIETSLLPVIWRN KNAGGFADLPDVPALMRRIENDTLPYAGLALPVRLGTIGNGYIVFCGSNLVLDNEVVI EQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDGRISEEIAVKLGLSVHTV NAYLGSATIKLDSVNRIQAIAKAIRLGYIH" misc_feature 478022..478192 /gene="visR" /locus_tag="AGROH133_03884" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(478025..478033,478070..478078,478100..478105, 478109..478114,478118..478132,478163..478165) /gene="visR" /locus_tag="AGROH133_03884" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(478058..478060,478064..478066,478070..478072, 478163..478171,478178..478180,478187..478192) /gene="visR" /locus_tag="AGROH133_03884" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 478360..480207 /gene="mclA1" /locus_tag="AGROH133_03886" /db_xref="GeneID:10266230" CDS 478360..480207 /gene="mclA1" /locus_tag="AGROH133_03886" /note="Bacterial chemotaxis sensory transducer, methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004277779.1" /db_xref="GI:325291915" /db_xref="GeneID:10266230" /translation="MHNRLFKSVAGKVVVLTIGLIALSVAAVGFSTYIRLKDNIITTA LRDTHSAMRGMAILYEMKVGGVALEMVDGELKSIGRASIGTLRDNDLVDRTAAGNGGI ATVFEAKAGDYIRMTTNLKNEKGERAAGTKLATDHPAFEKVSKGEGYFGAATLFGTNY MTGYMPVLNKSGATVGILFVGVPMAVYEAQIFGLRDLMLICGALAMVGVGLLAYFVIR RTLQPLGKLTDAVKSLSHGNLDTPIPYATNTNEFGNIARALVIFRENALEKLAIEGKS AEERSVAESERHRNDAEKQELDGQIEFAVSEIASGLGRLSRGDLSRTIETPFNGRLDR LRTDFNESLLNLRDALGQIRERTLVIQHSGFEIEQSSVDLSKRTENQAASLEETAAAV EEITATVRSSAERAREANEAVRITKQSADSSGSVVSNAVDAMGRIEDASRKIEQIIEV IDDIAFQTNLLALNAGIEAARAGEAGKGFAVVAQEVRELAQRSADAAREIKQLINQST HEVSSGSKLVQEAGTVLSAISHQIVAVSQHVETIATATQDQSSALHNVNGSVNQMDQM TQQNAALAQQSSAASRVLSGEVEALLDLVQRFQMEQGSATGQDRLSRAA" misc_feature 478951..479154 /gene="mclA1" /locus_tag="AGROH133_03886" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 479413..480156 /gene="mclA1" /locus_tag="AGROH133_03886" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 479620..480162 /gene="mclA1" /locus_tag="AGROH133_03886" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 480210..480308 /locus_tag="AGROH133_03891" /db_xref="GeneID:10266231" CDS 480210..480308 /locus_tag="AGROH133_03891" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277780.1" /db_xref="GI:325291916" /db_xref="GeneID:10266231" /translation="MEFLKVEELPDRKVREFFYSAAARAVLDIWLI" gene complement(480263..483772) /locus_tag="AGROH133_03892" /db_xref="GeneID:10266232" CDS complement(480263..483772) /locus_tag="AGROH133_03892" /note="Na+/solute symporter, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, phoR_proteo: phosphate regulon sensor kinase PhoR; Na+/proline symporter" /codon_start=1 /transl_table=11 /product="two component sensor kinase/response regulator hybrid" /protein_id="YP_004277781.1" /db_xref="GI:325291917" /db_xref="GeneID:10266232" /translation="MLPGWIIFGSAFAYVLLLFAVASYGDRNSRKRNAPKKGRPFVYA LSLAIYCTSWTYFGGVGLAADKGLEFLGIYTGPILAFTIGMPIIRRIVELAKTEKLTS VADFIAARYGKNSTVAMIVAIIALVGAIPYIALQLKAVSSSVATMVDPGDYGIGSGNL YFLDLPLLVTIVMAGFAVMFGTRHTDATEHQDGLILAISMESLVKLVAMCTVGFYVLF VLFDGPSHLWELASGNERAMRAISYHTPISRWIVMTLLSGFAIILLPRQFHVTVVENR TPEELRMAGFLLPLYLIAINIFVLPIALAGILTLGANGNADLYVLQLPLAHQMPVVSL ITFIGGFSAATAMVIVASVALSIMISNDIVMPIFLRQKLLNRSPHRDNFAKTLLNIRR TAIFAVMLLGYGYYRAADSATGLASIGLLAFAAIAQMAPALFGGLFWRRANARGAIAG LSSGFFVWAYLLFLPSFGGPDNSEVAATVLGFLFSGSTVFNGPEADPFVNAVILSLLV NSMAFVLGSLSRNPRPVERIQSGIFVKRHSKSQFATRGWKTRVSVGDLKSAIARYLGE ERMLRSLATYEKTAGRKLNDDQPADMALIHFSEQLLGSAIGSSSARLVLSIILQKAED TSADTAWLLDQASEALQYNQDMLQTALAQMDQGIAVFDSSQQLTIWNRRFRTLLDLPE QFGQVGLPLTDIVSMLQERGDMPPGDTEQLITSFLTMDLPFSLVLGGGERIIEVRSNT MPDKGIVATFTDITQRVASDQALKQANETLEQRVAERTVELTRVNRELAEARASADEA NIGKTRFFAAAGHDILQPLNAARLYSSSLVERLGASGESDLVQNIDSALESVETILGA VLDISRLDTGSMKARMTSVPLNELLKRIETDFAPMAQEKNLDLVVMPTSLTVRSDPNL LRRLIQNLVSNAIKYTLSGKVIVGARRRGGDVVIQVTDSGIGIPASKFRTVFKEFARL DEGAKTASGLGLGLSIVDRLSRMLHHPVQLISTPGKGTTFRIHLLREADRLTPAKAAG GIANPVASDRLAGVRVLCIDNEPKILEGMTLLLTGWGCEVLPAGSVATLEEPFLTMSA VPDVIIADYHLDDGDGISAIRLIRTFYGKTIPALLVTADRSPEVRSDAEKYGITVQHK PVKPAALRAYINQISSTARAAAE" misc_feature complement(482192..483772) /locus_tag="AGROH133_03892" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" misc_feature complement(481490..481822) /locus_tag="AGROH133_03892" /note="PAS fold; Region: PAS_7; pfam12860" /db_xref="CDD:193334" misc_feature complement(481175..481369) /locus_tag="AGROH133_03892" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cl00080" /db_xref="CDD:153499" misc_feature complement(480725..481030) /locus_tag="AGROH133_03892" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(480737..480739,480743..480748, 480761..480763,480767..480769,480815..480826, 480902..480907,480911..480913,480917..480919, 480923..480925,480989..480991,480998..481000, 481010..481012)) /locus_tag="AGROH133_03892" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(480998..481000) /locus_tag="AGROH133_03892" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(480818..480820,480824..480826, 480905..480907,480911..480913)) /locus_tag="AGROH133_03892" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(480272..480655) /locus_tag="AGROH133_03892" /note="FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784" /db_xref="CDD:31127" misc_feature complement(480293..480634) /locus_tag="AGROH133_03892" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(480332..480337,480344..480346, 480398..480400,480461..480463,480485..480487, 480620..480625)) /locus_tag="AGROH133_03892" /note="active site" /db_xref="CDD:29071" misc_feature complement(480485..480487) /locus_tag="AGROH133_03892" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(480461..480469,480473..480478)) /locus_tag="AGROH133_03892" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(480329..480337) /locus_tag="AGROH133_03892" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 483989..484417 /gene="mscL" /locus_tag="AGROH133_03907" /db_xref="GeneID:10266233" CDS 483989..484417 /gene="mscL" /locus_tag="AGROH133_03907" /note="Large-conductance mechanosensitive channel" /codon_start=1 /transl_table=11 /product="large conductance mechanosensitive channel protein" /protein_id="YP_004277782.1" /db_xref="GI:325291918" /db_xref="GeneID:10266233" /translation="MLNEFKTFIARGNVMDLAVGVIIGAAFSKIVDSVVNDLIMPIVG AIFGGFDFSNYFLPLSSSVTASSLAAARDQGAVFAYGNFLTVLINFLILAWIIFLMVK GVNKLRASVDRKKIEEKSEPAPPPEDVKLLTEIRDLLKTR" misc_feature 483989..484414 /gene="mscL" /locus_tag="AGROH133_03907" /note="Large-conductance mechanosensitive channel, MscL; Region: MscL; cl00860" /db_xref="CDD:186226" gene 484570..485736 /gene="aspB" /locus_tag="AGROH133_03911" /db_xref="GeneID:10266234" CDS 484570..485736 /gene="aspB" /locus_tag="AGROH133_03911" /EC_number="2.6.1.1" /note="catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Aspartate/tyrosine/aromatic aminotransferase" /codon_start=1 /transl_table=11 /product="aspartate aminotransferase" /protein_id="YP_004277783.1" /db_xref="GI:325291919" /db_xref="GeneID:10266234" /translation="MSILNSLSARSLAAPQSGIVEVVNYARGRDNLLPLWVGEGDLPS PDFINKAAIDGLNNGETFYTWQRGIPELRQALSSYYERHFSASLSADHFYVTGSGMQA IALAVQALTSPGDEMIYLTPTWPNIVAAIGVAGAKAVAAGIDFHDGRWDLDIGKLESA ITGKTKALFINTPSNPTGWTATRDNLRDVLALARKHDLWIVADEIYALYHYTGTRAPS FLDVMEPDDKIVFANSFSKNWSMTGWRVGWLVAPPVIGQVIENLIQYSTSGVAQFMQR GAVAALDHGDGFVRENYERALTSRDILCDALIATNRVETLKPDGALYAFLKVDGVTDS RATALDIVDKTGVGLAPGTAFGQGGELFLRACFLRNPKQIEDAADRLASYILGR" misc_feature 484588..485712 /gene="aspB" /locus_tag="AGROH133_03911" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature 484666..485715 /gene="aspB" /locus_tag="AGROH133_03911" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(484861..484869,484939..484941,485092..485094, 485185..485187,485269..485271,485275..485280, 485302..485304) /gene="aspB" /locus_tag="AGROH133_03911" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(484870..484872,484969..484971,485164..485166, 485296..485304,485389..485391,485398..485400) /gene="aspB" /locus_tag="AGROH133_03911" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 485278..485280 /gene="aspB" /locus_tag="AGROH133_03911" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 486063..487094 /gene="galE" /locus_tag="AGROH133_03912" /db_xref="GeneID:10266235" CDS 486063..487094 /gene="galE" /locus_tag="AGROH133_03912" /EC_number="5.1.3.2" /note="UDP-glucose 4-epimerase" /codon_start=1 /transl_table=11 /product="UDP-galactose 4-epimerase" /protein_id="YP_004277784.1" /db_xref="GI:325291920" /db_xref="GeneID:10266235" /translation="MAVLVTGGAGYIGSHMVWALLDAGEDVVVVDRLSTGSRWAVAPA ARFYLGDVADRDLLGQIFEHNQIETIFHFAGSVSVPESISQPLEYYENNTGTTRALVA AAVGHGIRNFIFSSTAAVYGNQPFDGPVPETAVLSPENPYGLSKLASEIMLRDVVQAH DFNYVALRYFNVAGADPKGRAGPSPTGVANLIKVACEAATGRRDKVEVYGTDYPTADG TGVRDYIHVSDLIDAHMLAMAHLRAGGGTRTLNCGYGVGYSVLDVLHAVQRESGNDFP VIHCPRRAGDIAAMVADSSRIQSELGWSPRFNDLTTIVRTALQWEAKRQAQRSDRILP GRHKLAAIG" misc_feature 486063..487034 /gene="galE" /locus_tag="AGROH133_03912" /note="UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]; Region: GalE; COG1087" /db_xref="CDD:31284" misc_feature 486066..487025 /gene="galE" /locus_tag="AGROH133_03912" /note="UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247" /db_xref="CDD:187558" misc_feature order(486081..486083,486087..486098,486153..486170, 486210..486218,486279..486287,486291..486293, 486336..486338,486405..486413,486486..486488, 486498..486500,486567..486572,486576..486578) /gene="galE" /locus_tag="AGROH133_03912" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187558" misc_feature order(486309..486311,486315..486323,486330..486335, 486342..486347,486354..486359,486363..486368, 486375..486377,486483..486485,486492..486494, 486504..486506,486513..486518,486522..486530) /gene="galE" /locus_tag="AGROH133_03912" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187558" misc_feature order(486339..486341,486411..486413,486486..486488, 486498..486500) /gene="galE" /locus_tag="AGROH133_03912" /note="active site" /db_xref="CDD:187558" misc_feature order(486411..486419,486486..486488,486567..486575, 486627..486635,486678..486689,486720..486722, 486726..486728,486732..486734,486840..486842, 486909..486911,486918..486920) /gene="galE" /locus_tag="AGROH133_03912" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187558" gene complement(487122..487943) /locus_tag="AGROH133_03913" /db_xref="GeneID:10266236" CDS complement(487122..487943) /locus_tag="AGROH133_03913" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277785.1" /db_xref="GI:325291921" /db_xref="GeneID:10266236" /translation="MDASLQKRVRPGALLFAVLAVCLAILATVLLANDKKHLKSLLSY LNLAPATRSAEQPARMKPVKRQKVTAQKLNLPPHLLKFEQGGDRASFARDFVLSGKDL CDRFTAAGFSNPQGWHASPVKIRNFECMADLVVGDTANASERASLFLDIRGEASDEVR SIRMKVVSPQTPDGAVILTKLEDALAMIIEQTRWADLASMLEPARRLQPYQAEHFGIS VSLKPEPSAPHRLNLILLATEQLPGLKLTRSFFDSEKWLPAATLSDRPVLYFSVR" gene complement(488092..488319) /locus_tag="AGROH133_03916" /db_xref="GeneID:10266237" CDS complement(488092..488319) /locus_tag="AGROH133_03916" /note="Zinc finger, NHR/GATA-type; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277786.1" /db_xref="GI:325291922" /db_xref="GeneID:10266237" /translation="MTKSSPEGAGNVTPLRKTKPCPECGRPSTREDYPFCSDRCRSLD LARWLNGSYAIPVADDESSADEQDSFKNSSE" misc_feature complement(488149..488289) /locus_tag="AGROH133_03916" /note="Domain of unknown function (DUF329); Region: DUF329; cl01144" /db_xref="CDD:194050" gene complement(488323..488946) /gene="maf" /locus_tag="AGROH133_03917" /db_xref="GeneID:10266238" CDS complement(488323..488946) /gene="maf" /locus_tag="AGROH133_03917" /note="Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Nucleotide-binding protein implicated in inhibition of septum formation" /codon_start=1 /transl_table=11 /product="Maf-like protein" /protein_id="YP_004277787.1" /db_xref="GI:325291923" /db_xref="GeneID:10266238" /translation="MTNSKQKLVLASGSPRRLELLHQIGIEPARLMPMDIDETPVKLE HPRTLCRRLSLQKAEAAHAALKSEQTWKDAYVLGSDTVVAVGRRIVGKAEYTEEASAA LHLLSGRSHWVYTGICLVTPGGKIRQKVVETKVRFKRLTTREIDAYIASGQWRGKAGA YGIQGIAGSFVQKLTGSYTNVVGLPLYETMSLLSGEGFEVTSGWLEG" misc_feature complement(488368..488925) /gene="maf" /locus_tag="AGROH133_03917" /note="Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555" /db_xref="CDD:29954" misc_feature complement(order(488671..488673,488707..488709, 488776..488778,488833..488835,488896..488898, 488911..488913)) /gene="maf" /locus_tag="AGROH133_03917" /note="active site" /db_xref="CDD:29954" misc_feature complement(order(488557..488574,488794..488796)) /gene="maf" /locus_tag="AGROH133_03917" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29954" gene complement(488981..489280) /gene="infA" /locus_tag="AGROH133_03918" /db_xref="GeneID:10266239" CDS complement(488981..489280) /gene="infA" /locus_tag="AGROH133_03918" /note="stimulates the activities of the other two initiation factors, IF-2 and IF-3; Translation initiation factor 1 (IF-1)" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="YP_004277788.1" /db_xref="GI:325291924" /db_xref="GeneID:10266239" /translation="MCRDCVVSAQFSRTRQVRHYQQEENPYMTKEEVLEFPGIVTELL PNATFRVKLENEHEIIAHTAGRMRKNRIRVLAGDKVLVEMTPYDLSKGRITYRFK" misc_feature complement(488990..489181) /gene="infA" /locus_tag="AGROH133_03918" /note="S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451" /db_xref="CDD:88417" misc_feature complement(order(489002..489004,489008..489010, 489059..489070,489083..489088,489095..489097, 489131..489133,489149..489157)) /gene="infA" /locus_tag="AGROH133_03918" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:88417" misc_feature complement(order(488990..488992,489083..489085, 489095..489097)) /gene="infA" /locus_tag="AGROH133_03918" /note="predicted 30S ribosome binding site; other site" /db_xref="CDD:88417" gene complement(489410..489898) /locus_tag="AGROH133_03919" /db_xref="GeneID:10266240" CDS complement(489410..489898) /locus_tag="AGROH133_03919" /EC_number="3.1.3.48" /note="Protein-tyrosine phosphatase, low molecular weight, Low molecular weight phosphotyrosine protein phosphatase; Protein-tyrosine-phosphatase" /codon_start=1 /transl_table=11 /product="arsenate reductase/phosphatase protein" /protein_id="YP_004277789.1" /db_xref="GI:325291925" /db_xref="GeneID:10266240" /translation="MRDPATAPNGGQAPKSVLFMCGMNSIRSPMAEVIAKRLVAPGIY IQSAGVRAGERDPFVDAVLEEQGFSLGKHKPRTLDEIEDDFFDLIITLTPEAHHAALE LTRSNSLDVVYWPTMDPTVITGTRDQILDAYREVRDHLARLIAERLPGRPQPAADTLS KD" misc_feature complement(489452..489856) /locus_tag="AGROH133_03919" /note="Low molecular weight phosphatase family; Region: LMWPc; cd00115" /db_xref="CDD:29014" misc_feature complement(order(489815..489823,489827..489832, 489836..489838)) /locus_tag="AGROH133_03919" /note="Active site [active]" /db_xref="CDD:29014" gene complement(489901..490374) /locus_tag="AGROH133_03920" /db_xref="GeneID:10266241" CDS complement(489901..490374) /locus_tag="AGROH133_03920" /note="Uncharacterised protein family (UPF0262); Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277790.1" /db_xref="GI:325291926" /db_xref="GeneID:10266241" /translation="MASGDFRLCDVVLDDSIGRSTPDVEHERAVAIFDLIEENTFEPF GHEGGPYRLHISLVDAKLVFSIKTEDEKDVSTHILSLTPFRRIIKDYFLICESYYEAI RSSTPSQIEAIDMGRRGIHNDGSQTLMDRLSGKIKIDFDTARRLFTLVCVLYWRG" misc_feature complement(489904..490374) /locus_tag="AGROH133_03920" /note="Uncharacterised protein family (UPF0262); Region: UPF0262; cl11489" /db_xref="CDD:187072" gene complement(490378..491676) /gene="hisD" /locus_tag="AGROH133_03921" /db_xref="GeneID:10266242" CDS complement(490378..491676) /gene="hisD" /locus_tag="AGROH133_03921" /EC_number="1.1.1.23" /note="catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer" /codon_start=1 /transl_table=11 /product="Histidinol dehydrogenase" /protein_id="YP_004277791.1" /db_xref="GI:325291927" /db_xref="GeneID:10266242" /translation="MAIWLERASADFEQKFAAFLTTKREVSEDVNATVRDIIDDVRNR GDAALAHYSIKFDGIDFSKVSMRVTAEEIDAAVAAVDRSVIEALELAARRIEKHHARQ MPKDDIYEDEIGVGLGSRWTAIEAVGLYVPGGTASYPSSVLMNAVPAKVAGVERIVMV VPANGGVINPAVLAAARIAGVEEIYRIGGAQAVAALAYGTETITPVAKIVGPGNAYVA AAKRHVFGTVGIDMIAGPSEVLIIADRDNDPDWLAADLLAQAEHDRGAQSILITDNAE LGKAVEAAVERQLKRLSRAETAAASWADFGAIILVEKLTDAVSLANRIAAEHLELAVD DPDALMAHIRNAGAIFVGRHTPEVIGDYVGGSNHVLPTARSARFSSGLSVLDFVKRTS ILRLGPEQLRQLAPAAITLARSEGLDAHARSVSIRLNPES" misc_feature complement(490390..491658) /gene="hisD" /locus_tag="AGROH133_03921" /note="Histidinol dehydrogenase [Amino acid transport and metabolism]; Region: HisD; COG0141" /db_xref="CDD:30490" misc_feature complement(490417..491589) /gene="hisD" /locus_tag="AGROH133_03921" /note="E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-...; Region: Histidinol_dh; cd06572" /db_xref="CDD:119329" misc_feature complement(order(490891..490893,491026..491031, 491035..491043,491104..491106,491110..491115, 491191..491193,491254..491256,491278..491283, 491287..491289,491509..491511)) /gene="hisD" /locus_tag="AGROH133_03921" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature complement(order(490417..490437,490441..490446, 490489..490512,490519..490524,490528..490542, 490546..490551,490579..490581,490585..490587, 490591..490605,490609..490614,490618..490620, 490624..490650,490654..490659,490666..490668, 490681..490683,490891..490896,490900..490908, 490912..490917,490924..490929,490999..491001, 491011..491013,491056..491058,491257..491271, 491305..491307,491311..491313,491320..491334, 491344..491346,491350..491352,491371..491376, 491383..491388,491395..491400,491407..491409, 491413..491418,491425..491430)) /gene="hisD" /locus_tag="AGROH133_03921" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119329" misc_feature complement(order(490417..490419,490426..490428, 490432..490434,490573..490575,490591..490596, 490606..490608,490693..490698,490891..490893, 490966..490968,491257..491259,491263..491265)) /gene="hisD" /locus_tag="AGROH133_03921" /note="product binding site; other site" /db_xref="CDD:119329" misc_feature complement(order(490417..490419,490426..490428, 490432..490434,490573..490575,490591..490596, 490606..490608,490693..490698,490891..490893, 490900..490902,490966..490968,491257..491259)) /gene="hisD" /locus_tag="AGROH133_03921" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature complement(order(490417..490419,490594..490596, 490891..490893,490900..490902)) /gene="hisD" /locus_tag="AGROH133_03921" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:119329" misc_feature complement(490693..490698) /gene="hisD" /locus_tag="AGROH133_03921" /note="catalytic residues [active]" /db_xref="CDD:119329" gene complement(491808..492248) /locus_tag="AGROH133_03922" /db_xref="GeneID:10266243" CDS complement(491808..492248) /locus_tag="AGROH133_03922" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277792.1" /db_xref="GI:325291928" /db_xref="GeneID:10266243" /translation="MSGLKLLALDTEDLSVISTHMQDSVFKLKDVAFEAKQGQFTLSA NRFVWENANKKNLPPERCRSVVFLKRVSAVRSHGINRTDKEQVLSLLAIRFVQNGEGP DGAVELTLSGGGAIALDVECIEAQLTDVSGAWETAAKPHHPDSE" misc_feature complement(491823..492239) /locus_tag="AGROH133_03922" /note="Protein of unknown function (DUF2948); Region: DUF2948; pfam11164" /db_xref="CDD:151606" gene complement(492364..493656) /gene="murA" /locus_tag="AGROH133_03923" /db_xref="GeneID:10266244" CDS complement(492364..493656) /gene="murA" /locus_tag="AGROH133_03923" /EC_number="2.5.1.7" /note="adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine enolpyruvyl transferase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 1-carboxyvinyltransferase" /protein_id="YP_004277793.1" /db_xref="GI:325291929" /db_xref="GeneID:10266244" /translation="MDRIRITGGNKLNGIIPISGAKNAALPLMIASLLTSDTLTLENV PHLADVEQLIRILGNHGVDISVNGRRESQGEAYSRTVHFTCRTIVDTTAPYELVSKMR ASFWVIGPLLAREGRARVSLPGGCAIGTRPVDLFIEGLQALGATMEIDGGYINASAPK GGLIGAVYTFPKVSVGATHVMLMAASLARGTTVIHNAAREPEVVDLAHCLIAMGAKIE GAGTSTITIEGVTSLSGARHRVLPDRIETGTYAMAVAMAGGDVVLEGTRASLLDNALD TLRLAGVSISDTETGLRVVRNGNGIQPVDIVTEPFPGFPTDLQAQFMALMTRSQGVSH ITETIFENRFMHVQELARLGAKISLSGQMARIEGVTRLKGAPVMATDLRASVSLVIAG LVAEGETMVSRVYHLDRGFERLEEKLTRCGALVERVSD" misc_feature complement(492373..493656) /gene="murA" /locus_tag="AGROH133_03923" /note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated; Region: PRK09369" /db_xref="CDD:181804" misc_feature complement(492394..493623) /gene="murA" /locus_tag="AGROH133_03923" /note="UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555" /db_xref="CDD:30128" misc_feature complement(order(492928..492939,493594..493605)) /gene="murA" /locus_tag="AGROH133_03923" /note="hinge; other site" /db_xref="CDD:30128" misc_feature complement(order(492706..492708,493129..493134, 493141..493143,493249..493266,493339..493341, 493351..493353,493588..493590)) /gene="murA" /locus_tag="AGROH133_03923" /note="active site" /db_xref="CDD:30128" gene complement(493759..494025) /locus_tag="AGROH133_03924" /db_xref="GeneID:10266245" CDS complement(493759..494025) /locus_tag="AGROH133_03924" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277794.1" /db_xref="GI:325291930" /db_xref="GeneID:10266245" /translation="MNEHHDKQAKAAVSVNASEDPVALAASGNAQAGPGEKARQREAE RKARAAKKLRENLQKRKQQVRARRAGDADETIGLPAAKTDESSS" gene 494181..494255 /locus_tag="AGROH133_03925" /db_xref="GeneID:10266246" tRNA 494181..494255 /locus_tag="AGROH133_03925" /product="tRNA-Thr" /anticodon=(pos:494213..494215,aa:Thr) /db_xref="GeneID:10266246" gene complement(494451..495686) /gene="flaB" /locus_tag="AGROH133_03926" /db_xref="GeneID:10266247" CDS complement(494451..495686) /gene="flaB" /locus_tag="AGROH133_03926" /note="Bacterial flagellin N-terminus; Flagellin and related hook-associated proteins" /codon_start=1 /transl_table=11 /product="Flagellin B protein" /protein_id="YP_004277795.1" /db_xref="GI:325291931" /db_xref="GeneID:10266247" /translation="MTSILTNAAAMSALQTLRTIGQNMENTQASVSSGLRVASASDNA AYWSIATTMRSDNGALSAVQDALGLGAAKVDTASAGMESIIDVVKQIKNKLVAATEDG VDKAKIQGEVKQLQDQIKGIIDSASFSGENWLKGDLSTTTTKTVVGSFVREGGTVSVK TIGYTLDASKVLVDTRATGTKTGILDTAYTGLNANTVTVDINKGGVITQASVRAYSTD EMLSLGAKVDGANSNVAVGGGAAFVKVNGSWVQGSVVAAASITASTPVAGKFAAAYTA AEAGTAAAVGDAIIVNETNSGTGAVNLTQSVLTMDVSSMTLTDVGSYLKGVEKALTSL TSAAAELGSIKMRIDLQEDFASKLSDSIDKGIGRLVDADMNEESTKLKALQTQQQLAI QSLSIANTSSENILSLFRQ" misc_feature complement(495270..495677) /gene="flaB" /locus_tag="AGROH133_03926" /note="Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669" /db_xref="CDD:144315" misc_feature complement(494457..>494777) /gene="flaB" /locus_tag="AGROH133_03926" /note="flagellin; Reviewed; Region: PRK12687" /db_xref="CDD:105853" gene complement(496085..497317) /gene="flaA" /locus_tag="AGROH133_03927" /db_xref="GeneID:10266248" CDS complement(496085..497317) /gene="flaA" /locus_tag="AGROH133_03927" /note="Bacterial flagellin N-terminus, flagella associated protein; Flagellin and related hook-associated proteins" /codon_start=1 /transl_table=11 /product="Flagellin A protein" /protein_id="YP_004277796.1" /db_xref="GI:325291932" /db_xref="GeneID:10266248" /translation="MASVLTNINAMSALQTLRSISSNMEDTQSRISSGMRVGSASDNA AYWSIATTMRSDNASLSAVQDAIGLGAAKVDTASAGMDAVIDVVKQIKNKLVTAQESS ADKTKIQGEVKQLQEQLKGIVDSASFSGENWLKGDLSTTTTKSVVGSFVREGGTVSVK TIDYALNASKVLVDTRATGTKTGILDTAYTGLNANTVTVDINKGGVITQASVRAYSTD EMLSLGAKVDGANSNVAVGGGSAFVKVDGSWVKGSVDAAASITASTPVAGKFAAAYTA AEAGTAAAAGDAIIVDETNSGAGAVNLTQSVLTMDVSSMSSTDVGSYLTGVEKALTSL TSAGAELGSIKQRIDLQVDFASKLGDALAKGIGRLVDADMNEESTKLKALQTQQQLAI QSLSIANSDSQNILSLFR" misc_feature complement(496088..497311) /gene="flaA" /locus_tag="AGROH133_03927" /note="Flagellin and related hook-associated proteins [Cell motility and secretion]; Region: FlgL; COG1344" /db_xref="CDD:31535" misc_feature complement(496901..497308) /gene="flaA" /locus_tag="AGROH133_03927" /note="Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669" /db_xref="CDD:144315" misc_feature complement(<496184..496348) /gene="flaA" /locus_tag="AGROH133_03927" /note="Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700" /db_xref="CDD:144340" gene complement(497691..498428) /gene="fliP" /locus_tag="AGROH133_03928" /db_xref="GeneID:10266249" CDS complement(497691..498428) /gene="fliP" /locus_tag="AGROH133_03928" /note="FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Flagellar biosynthesis pathway, component FliP" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FliP" /protein_id="YP_004277797.1" /db_xref="GI:325291933" /db_xref="GeneID:10266249" /translation="MIRFLVTIAVLVALPGLANAQQFPTDLFNTQIDGSVAAWIIRTF GLLTVLSVAPGILIMVTSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSP TFDKAWTDGVQPLLQNQINEQQAIGRIAEPFRTFMNANTRDKDLKLFVDIARERGQVV MTDNVVDYRVLVPAFMLSEIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSI SLPFKILFFVLIDGWNLLVGSLVRSFN" misc_feature complement(497697..498428) /gene="fliP" /locus_tag="AGROH133_03928" /note="FliP family; Region: FliP; cl00593" /db_xref="CDD:186095" gene complement(498425..498925) /gene="fliL" /locus_tag="AGROH133_03934" /db_xref="GeneID:10266250" CDS complement(498425..498925) /gene="fliL" /locus_tag="AGROH133_03934" /note="Flagellar basal body-associated protein FliL; Flagellar basal body-associated protein" /codon_start=1 /transl_table=11 /product="flagellar protein" /protein_id="YP_004277798.1" /db_xref="GI:325291934" /db_xref="GeneID:10266250" /translation="MENEQTEGKKKSSPMVMTIAGVAILTLLGAGGGWFVGGMVAPKI AGAEAHAPAAAGEHGEKKGEGIDKIPAEANGIVQLDPITTNLAYPSTNWVRLEVALMF KGPVEVNLAEDIHQDIMAYVRTVSLQQLEGPRGFQYLKDDIQERVDLRSQGRVSKVMF RTFVIE" misc_feature complement(498431..498697) /gene="fliL" /locus_tag="AGROH133_03934" /note="Flagellar basal body-associated protein FliL; Region: FliL; cl00681" /db_xref="CDD:193906" gene complement(498954..499670) /gene="flgH" /locus_tag="AGROH133_03936" /db_xref="GeneID:10266251" CDS complement(498954..499670) /gene="flgH" /locus_tag="AGROH133_03936" /note="part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod" /codon_start=1 /transl_table=11 /product="Flagellar basal body L-ring protein" /protein_id="YP_004277799.1" /db_xref="GI:325291935" /db_xref="GeneID:10266251" /translation="MTPRLPALLLPLALLAGCQNNQTLKEIGNAPAMSPIGSGLQFSQ TPQMGMYPKQPKHMASGYSLWSDSQGALFKDLRALNIGDILTVNIQINDKADFDNETE RNRTNSSGLNWKAKAEILGWTPEADSNIKYGSDTDTQAKGKTKRSEKLTLMVAAVVTG ILENGNLIISGSQEVRVNHEIRILNVGGIVRPQDVDAQNMISYERIAEARISYGGRGR LTEVQQPPVGQQVVDLFSPL" misc_feature complement(498957..499622) /gene="flgH" /locus_tag="AGROH133_03936" /note="Flagellar L-ring protein; Region: FlgH; cl00905" /db_xref="CDD:186249" gene complement(499667..500203) /gene="motE" /locus_tag="AGROH133_03938" /db_xref="GeneID:10266252" CDS complement(499667..500203) /gene="motE" /locus_tag="AGROH133_03938" /note="exported flagella related protein; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277800.1" /db_xref="GI:325291936" /db_xref="GeneID:10266252" /translation="MMELQKKTAFRNGFTRFAAVASLLFLLPAAGAESQQNVVSELST QDEIQKFCTNIADAARDQRYLMQKQELEKLQADVNERISALQDRKAEYEDWLARRNHF LEQAKSNLVDIYKTMKADAAAPQLEKMHVEIAAAIIMQLPPRQSGLILSEMDAQKAAI VAGIMSQAIDKNTSKDPS" misc_feature complement(499670..500152) /gene="motE" /locus_tag="AGROH133_03938" /note="MgtE intracellular N domain; Region: MgtE_N; cl15244" /db_xref="CDD:197452" gene complement(500200..501321) /gene="flgI" /locus_tag="AGROH133_03941" /db_xref="GeneID:10266253" CDS complement(500200..501321) /gene="flgI" /locus_tag="AGROH133_03941" /note="part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; Flagellar basal-body P-ring protein" /codon_start=1 /transl_table=11 /product="flagellar basal body P-ring protein" /protein_id="YP_004277801.1" /db_xref="GI:325291937" /db_xref="GeneID:10266253" /translation="MKVLRILCAALVISALPFLSTPPAQADTSRIKDIASLQAGRDNQ LIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQSNAKNIAAVMVTANLP PFASPGSRVDVTVSSLGDASSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDA ATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARA RYGDGIAEPRDSQEISVQKPRTADLTRLMAEIENLTVQTDTPAKVVINERTGTIVIGA DVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGETAVQPQTDIMALQEGSKVAIVEGP DLRTLVAGLNSIGLKADGIIAILQGIKSAGALQAELVLQ" misc_feature complement(500203..501321) /gene="flgI" /locus_tag="AGROH133_03941" /note="flagellar basal body P-ring protein; Provisional; Region: flgI; PRK05303" /db_xref="CDD:180004" misc_feature complement(500203..501297) /gene="flgI" /locus_tag="AGROH133_03941" /note="flagellar basal body P-ring protein; Reviewed; Region: flgI; cl14622" /db_xref="CDD:187395" gene complement(501318..501806) /gene="flgA" /locus_tag="AGROH133_03943" /db_xref="GeneID:10266254" CDS complement(501318..501806) /gene="flgA" /locus_tag="AGROH133_03943" /note="required for the assembly of the flagellar basal body P-ring; Bradyrhizobium japonicum has two types of flagella, a single thick flagella and a few thin flagella; the protein in this cluster is associated with the thin flagella; Flagellar basal body P-ring biosynthesis protein" /codon_start=1 /transl_table=11 /product="flagellar basal body P-ring biosynthesis protein FlgA" /protein_id="YP_004277802.1" /db_xref="GI:325291938" /db_xref="GeneID:10266254" /translation="MRFGRKHSSCRTALVRMCLASAFSLGAMAPAFAQAPTALVPTRT IYPGETITPEQVKPVEVTNPNISAGYASDISEVEGMISKQTLLPGRTIPIAALREPSL VVRGTSVKLVFHIGNMTLMASGTPMSDGSLGEVVRVRNIDSGVMVSGTVMKDGTIQVM AK" misc_feature complement(501321..501794) /gene="flgA" /locus_tag="AGROH133_03943" /note="SAF domain; Region: SAF; cl00555" /db_xref="CDD:193866" gene complement(501827..502615) /gene="flgG" /locus_tag="AGROH133_03946" /db_xref="GeneID:10266255" CDS complement(501827..502615) /gene="flgG" /locus_tag="AGROH133_03946" /note="makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; Flagellar basal body rod protein" /codon_start=1 /transl_table=11 /product="flagellar basal body rod protein FlgG" /protein_id="YP_004277803.1" /db_xref="GI:325291939" /db_xref="GeneID:10266255" /translation="MRALAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDLL YQTERMQGVPNRANQAIVPEGANIGLGVQTSAVRNIHTQGNLIETGNKLDVAIIGQGW FQIEAADGSTLYSRAGAFNKNADGNLVTVDGYNVIPNINIPTDAQDITITRTGQVTAR IGNAADFTELGQLTIANFANEAGLKPLGDNLFSQTPASGAAVIGVPDDPSYGYIKQSY LEGSNVDAVKEITDLITAQRAYEMNSKVITTADEMASIVSKNLK" misc_feature complement(501830..502615) /gene="flgG" /locus_tag="AGROH133_03946" /note="flagellar basal body rod protein FlgG; Reviewed; Region: flgG; PRK12691" /db_xref="CDD:183686" misc_feature complement(501893..502198) /gene="flgG" /locus_tag="AGROH133_03946" /note="flagellar basal-body rod protein FlgF; Region: flgF; TIGR02490" /db_xref="CDD:188226" gene complement(502738..503073) /gene="fliE" /locus_tag="AGROH133_03947" /db_xref="GeneID:10266256" CDS complement(502738..503073) /gene="fliE" /locus_tag="AGROH133_03947" /note="forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; Flagellar hook-basal body protein" /codon_start=1 /transl_table=11 /product="flagellar hook-basal body protein FliE" /protein_id="YP_004277804.1" /db_xref="GI:325291940" /db_xref="GeneID:10266256" /translation="MIDGIKQLGSLSLTRGTSNVSSLTDSIFGSQQTTPAQQTGASFA SVLGNMSTDAMNNLKKAEVASFEGIQGKANTREVVDAVLSAEQSLQTAIAFRDKIVSA YLDITKMQI" misc_feature complement(502741..503073) /gene="fliE" /locus_tag="AGROH133_03947" /note="Flagellar hook-basal body complex protein FliE; Region: FliE; cl09139" /db_xref="CDD:195803" gene complement(503070..503489) /gene="flgC" /locus_tag="AGROH133_03948" /db_xref="GeneID:10266257" CDS complement(503070..503489) /gene="flgC" /locus_tag="AGROH133_03948" /note="with FlgF and B makes up the proximal portion of the flagellar basal body rod; Flagellar basal body rod protein" /codon_start=1 /transl_table=11 /product="flagellar basal body rod protein FlgC" /protein_id="YP_004277805.1" /db_xref="GI:325291941" /db_xref="GeneID:10266257" /translation="MDPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPY RRKTVTFGSELDRVSGVQRVTVKKLGVDRGDFVHEYDPGNPAADTSGMVKMPNVNVLI EMADMREANRSYDANLQVIRQTRDLVASTIDLLKASQ" misc_feature complement(503082..503486) /gene="flgC" /locus_tag="AGROH133_03948" /note="flagellar basal body rod protein FlgC; Reviewed; Region: flgC; PRK12782" /db_xref="CDD:139220" misc_feature complement(503088..503204) /gene="flgC" /locus_tag="AGROH133_03948" /note="Domain of unknown function (DUF1078); Region: DUF1078; pfam06429" /db_xref="CDD:191521" gene complement(503493..503885) /gene="flgB" /locus_tag="AGROH133_03949" /db_xref="GeneID:10266258" CDS complement(503493..503885) /gene="flgB" /locus_tag="AGROH133_03949" /note="with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella; Flagellar basal body protein" /codon_start=1 /transl_table=11 /product="flagellar basal body rod protein FlgB" /protein_id="YP_004277806.1" /db_xref="GI:325291942" /db_xref="GeneID:10266258" /translation="MQPIQLFDLASRQAEWLSVRQEVVATNIANANTPKFHAKDVSPF EAVMQATSQQVGMAKTHPAHFGASELSENIAVRDNPINNEIGMQESGNSVALAEEMTK TGEIKRQYDLNASLVKSFHRMMLMTVKR" misc_feature complement(503499..503885) /gene="flgB" /locus_tag="AGROH133_03949" /note="flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK06003" /db_xref="CDD:168340" gene complement(504124..504696) /locus_tag="AGROH133_03950" /db_xref="GeneID:10266259" CDS complement(504124..504696) /locus_tag="AGROH133_03950" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277807.1" /db_xref="GI:325291943" /db_xref="GeneID:10266259" /translation="MKKKQIDKIDDSDLENVQPQPPFFTPDRILAWTGIGLAAAAAFF PWYVFFNEDKFGMRVADGDRTRDLPHTGPREVFSVSPLAMTNRNKEDAPAPGELPDML TTATVSEKGKEKQNNLAAGLEDQPFPGQTSFRLLHVSNGRALIEDGSGMYMVRVGSTL PDNARLTKIEQRDGEWMIETSSGKTYHPEK" gene complement(504700..506106) /gene="fliI" /locus_tag="AGROH133_03952" /db_xref="GeneID:10266260" CDS complement(504700..506106) /gene="fliI" /locus_tag="AGROH133_03952" /EC_number="3.6.3.14" /note="involved in type III protein export during flagellum assembly; Flagellar biosynthesis/type III secretory pathway ATPase" /codon_start=1 /transl_table=11 /product="flagellum-specific ATP synthase" /protein_id="YP_004277808.1" /db_xref="GI:325291944" /db_xref="GeneID:10266260" /translation="MTMPESTLTVEAISPKLAQLASLAGHYADPEFSVAPGGHVRTIA AGHYTVSGLSRHVRLGEFVAHRSATGIHLGEVVRVEPDICYVCPIEPGEPIGIHDTVI RKGAFRVAPDDSWCGRTINALGEPIDGKGPLASGTERRPISSNAPPSMTRKRVETPFK TGVRAIDIFSPLCLGQRLGIFAGSGVGKSTLLSMLAKADAFDKVVIGLVGERGREVRE FIEDTMGENMGKSVAVVATSDESPMLRKMAPLSAVTIAEYFRDRGDNVLLIIDSVTRF AHAIREVAVASGEPPVARGYPASVFTELPRLLERAGPGAEGSGTITAIVSILVDGDNH NDPIADSTRGILDGHIVLDRSLAEEGRYPPINPLASISRLAKKAWTPDQEKLVSRLKA LVHRFEETRDLRLIGGYRPGTDPDLDMAVKQVPIIYETLKQLPNEPAAQDAYADLATA LRGGVQNNQPQVNPRMRG" misc_feature complement(504727..506073) /gene="fliI" /locus_tag="AGROH133_03952" /note="flagellum-specific ATP synthase; Validated; Region: fliI; PRK06002" /db_xref="CDD:168339" misc_feature complement(504808..505785) /gene="fliI" /locus_tag="AGROH133_03952" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(505540..505548,505558..505563)) /gene="fliI" /locus_tag="AGROH133_03952" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature complement(order(505291..505296,505480..505485, 505489..505491,505540..505548,505558..505560)) /gene="fliI" /locus_tag="AGROH133_03952" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature complement(505294..505308) /gene="fliI" /locus_tag="AGROH133_03952" /note="Walker B motif; other site" /db_xref="CDD:29986" gene complement(506118..506852) /gene="flgF" /locus_tag="AGROH133_03953" /db_xref="GeneID:10266261" CDS complement(506118..506852) /gene="flgF" /locus_tag="AGROH133_03953" /note="FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; Flagellar basal body rod protein" /codon_start=1 /transl_table=11 /product="flagellar basal body rod protein FlgF" /protein_id="YP_004277809.1" /db_xref="GI:325291945" /db_xref="GeneID:10266261" /translation="MQSGLYVALSSQIALERRLTTISDNMANANTVGFRGSEVKFDEM VAKNHNDMNAKVAFVSQGNDYLSTRQGAFEQTGNSFDFAIKGDAWFAMDTPDGQILSR DGRFTMRPDGALISSSGYPVLDAGGGPIQLNANGGPITVSLDGAIRQNDNIVATLGVF QADFSKGFLRHPNSGVKPVAPPTPVVNNHEVGVVQGYLEQSNVNGISQMTQLIQVNRA FESISSLMRDTESTFGDAIKTLGGAR" misc_feature complement(506121..506852) /gene="flgF" /locus_tag="AGROH133_03953" /note="flagellar basal body rod protein FlgF; Reviewed; Region: flgF; PRK12642" /db_xref="CDD:183643" misc_feature complement(506748..506840) /gene="flgF" /locus_tag="AGROH133_03953" /note="Flagella basal body rod protein; Region: Flg_bb_rod; cl15245" /db_xref="CDD:197453" misc_feature complement(506193..506465) /gene="flgF" /locus_tag="AGROH133_03953" /note="flagellar basal-body rod protein FlgF; Region: flgF; TIGR02490" /db_xref="CDD:188226" gene complement(506854..507633) /locus_tag="AGROH133_03954" /db_xref="GeneID:10266262" CDS complement(506854..507633) /locus_tag="AGROH133_03954" /note="Protein of unknown function DUF1217" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277810.1" /db_xref="GI:325291946" /db_xref="GeneID:10266262" /translation="MTSTYTSYRLISQDIGKSLERVSKQPDVARETEYYRSKIGSVKS VDDFMADTRLYNYALKANGLEDMAYAKAFIRKVLTEGTADKNAFANKLSDSRYSDLAK SLDFASLGAAATATEAAQSGIISKYTRQTLEQEAGGDNNGVRLALYFERKAPTIKSGL DFLADDALAQVFRTAYNLPDEIAAGSVEKQAALIEKSINIKDLQNPEKVGKLLERFTI MWEMQNPSTTYDPLAVFGSSSGYGISPDLLISINSLKLGGK" misc_feature complement(507400..>507576) /locus_tag="AGROH133_03954" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature complement(507007..507453) /locus_tag="AGROH133_03954" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" gene 507818..508690 /gene="motA" /locus_tag="AGROH133_03955" /db_xref="GeneID:10266263" CDS 507818..508690 /gene="motA" /locus_tag="AGROH133_03955" /note="With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Flagellar motor component" /codon_start=1 /transl_table=11 /product="flagellar motor protein MotA" /protein_id="YP_004277811.1" /db_xref="GI:325291947" /db_xref="GeneID:10266263" /translation="MNIVIGLIITFGCIIGGYMAMGGHLDVLVQPFELLIIGGAGLGG FIMANPMKVVKDSGKALGEAFKHSVPKERNYLDVLGVLYSLMRDLRTKSRNEIEAHID NPEESSIFQSAPSVLKNKELTSFICDYVRLIIIGNARSHEIEALMDEEIETILHDKLK PYHAITTMGDSFPAIGIVAAVLGVIKAMGKINESPEVLGGLIGAALVGTMLGIILSYS ICNPLASQVKIVRTKQHRLYIIVKQTLIAYMNGSVPQVALEYGRKTISNYERPSIDAV EQEMMNPGGENKAA" misc_feature 507818..508672 /gene="motA" /locus_tag="AGROH133_03955" /note="Flagellar motor component [Cell motility and secretion]; Region: MotA; COG1291" /db_xref="CDD:31482" misc_feature 507818..508666 /gene="motA" /locus_tag="AGROH133_03955" /note="MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568" /db_xref="CDD:186086" gene 508687..509646 /gene="fliM" /locus_tag="AGROH133_03960" /db_xref="GeneID:10266264" CDS 508687..509646 /gene="fliM" /locus_tag="AGROH133_03960" /note="Surface presentation of antigens (SPOA) protein" /codon_start=1 /transl_table=11 /product="Flagellar motor switch protein" /protein_id="YP_004277812.1" /db_xref="GI:325291948" /db_xref="GeneID:10266264" /translation="MTMAKAAQQRAPVIDTSLLAKLTGGLSDRKTIAKVGSDIGHLYS EFLPDIFHSETGIAIDVEYIGSESGLMTDLIANIGGNFSVADCSLRNWCPNFMMAVGN GFVIALMERMLGAAADTIGEPDERSLSHIELDLAAMVLGRIGGVLRSGVNAPGGFEAT IDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGKVSSEFALIVPQRPLLKTSIAAPKAS AQALKKQAEWVDLISEQVKRSQVTLEARIKLETLTLRTISRLVAGDVIPFQDLKQDDI GVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHLMG" misc_feature 508687..509643 /gene="fliM" /locus_tag="AGROH133_03960" /note="Flagellar motor switch protein [Cell motility and secretion]; Region: FliM; COG1868" /db_xref="CDD:32053" misc_feature 509380..509601 /gene="fliM" /locus_tag="AGROH133_03960" /note="Surface presentation of antigens (SPOA); Region: SpoA; cl00819" /db_xref="CDD:186206" gene 509711..510250 /gene="fliN" /locus_tag="AGROH133_03961" /db_xref="GeneID:10266265" CDS 509711..510250 /gene="fliN" /locus_tag="AGROH133_03961" /note="Flagellar motor switch FliN, Surface presentation of antigens (SPOA) protein; Flagellar motor switch/type III secretory pathway protein" /codon_start=1 /transl_table=11 /product="flagellar motor switch protein FliN" /protein_id="YP_004277813.1" /db_xref="GI:325291949" /db_xref="GeneID:10266265" /translation="MATKKTPVTDDMALPSLEDGGELDQAIGDLRGVLKTDAEGSLSD FGDFGDFGSVDDASADSDLSAFDGGAGDFAMNDFAATPQVAGIKAPLGSGLSDNMDLI MDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLE DDDTRFGVKLIEVMSTRKA" misc_feature 510002..510241 /gene="fliN" /locus_tag="AGROH133_03961" /note="Surface presentation of antigens (SPOA); Region: SpoA; cl00819" /db_xref="CDD:186206" gene 510278..511321 /gene="fliG" /locus_tag="AGROH133_03962" /db_xref="GeneID:10266266" CDS 510278..511321 /gene="fliG" /locus_tag="AGROH133_03962" /note="One of three proteins involved in switching the direction of the flagellar rotation; Flagellar motor switch protein" /codon_start=1 /transl_table=11 /product="flagellar motor switch protein G" /protein_id="YP_004277814.1" /db_xref="GI:325291950" /db_xref="GeneID:10266266" /translation="MMDFEDFGNPLAGKPLSQADKAAAVLLAMGKGVAGKLLKFFTQH ELQMIISSAQTLRVIPPDELAQIVAEFEDLFTEGTGLMDNAKAIESILEEGLTPEEVD SLLGRRAAFQAYEASIWDRLQEAEPEFVGKFLLREHPQTIAYILSMLPSSFGAKVLLT IPEEQRADIMNRTVNMKEVSPTAAQIIEKRVVNLINEIEAERNAGGSTKVADLMNEME KPQVDTLLSSLETLSKEAANKVKPKIFLFDDLMFMPQRSRVLLLNDVSADVLTMALRG ATMEIKECVLSSISPRQRRMIESDLAVPQASINTREVAIARRAVAQEAIRLANSGQIQ LKEASTEEQSAAA" misc_feature 510290..511291 /gene="fliG" /locus_tag="AGROH133_03962" /note="flagellar motor switch protein G; Validated; Region: fliG; PRK05686" /db_xref="CDD:180201" misc_feature 510977..511285 /gene="fliG" /locus_tag="AGROH133_03962" /note="FliG C-terminal domain; Region: FliG_C; pfam01706" /db_xref="CDD:190075" gene 511448..512530 /gene="flhB" /locus_tag="AGROH133_03963" /db_xref="GeneID:10266267" CDS 511448..512530 /gene="flhB" /locus_tag="AGROH133_03963" /note="membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; Flagellar biosynthesis pathway, component FlhB" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FlhB" /protein_id="YP_004277815.1" /db_xref="GI:325291951" /db_xref="GeneID:10266267" /translation="MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFY CYLVFFLPDGAGRLGVTLKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMF IVFGLASSFFQNLPSPVLERVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSI IMFLSLRGDFYSLIDLMFSDPQVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHW FSQLKMTKHEVKEEYKQSQGDPVVKARQRSVARDRARRRMIDNVPRATLVIANPTHFA VALRYVREEGDAPVVVAKGQDLIALKIREIAEKNNIPVFEDPPLARSMFAQVSIDSVI PPAFYKAVAELVHRVYAMKSSKIRVQ" misc_feature 511451..512515 /gene="flhB" /locus_tag="AGROH133_03963" /note="Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlhB; cl12017" /db_xref="CDD:196301" misc_feature 511451..512515 /gene="flhB" /locus_tag="AGROH133_03963" /note="flagellar biosynthesis protein FlhB; Reviewed; Region: flhB; PRK05702" /db_xref="CDD:180212" gene 512536..512973 /locus_tag="AGROH133_03968" /db_xref="GeneID:10266268" CDS 512536..512973 /locus_tag="AGROH133_03968" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277816.1" /db_xref="GI:325291952" /db_xref="GeneID:10266268" /translation="MKKSAYSEKREMIVAEAINPIATELRLLDPADLISLLRFECYGS IADLVSSAAELYYHPGTINFGAGGEYRLEWEGAPEIVLDLELKPHGATVYAQLILANE HAAVEINHVSFQNPSENPDENTEFLRQSLTAARFVSARQGEAA" gene 513033..513167 /locus_tag="AGROH133_03969" /db_xref="GeneID:10266269" CDS 513033..513167 /locus_tag="AGROH133_03969" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277817.1" /db_xref="GI:325291953" /db_xref="GeneID:10266269" /translation="MASFGRFFTRPCLKRVGLCKTGVKGKERLANQRCCLVPIELTIC " gene 513279..514571 /gene="flaD" /locus_tag="AGROH133_03970" /db_xref="GeneID:10266270" CDS 513279..514571 /gene="flaD" /locus_tag="AGROH133_03970" /note="Flagellin and related hook-associated proteins" /codon_start=1 /transl_table=11 /product="flagellin protein FlaD" /protein_id="YP_004277818.1" /db_xref="GI:325291954" /db_xref="GeneID:10266270" /translation="MTSILTNAAAMAALQTLRMIDKNLETTQARVSSGYRVETAADNA AYWSISTTMRSDNAALSAVQDALGLGAAKVDTAYDALANSIEVVKKIKEKLVAAYGVG ADRGKIQDEIKQLQEQLKSTSESASFSGENWLQASISNGGTPPVVEPITKKVVASFTR TGSGNVGVTTVDYVLDGSAVLFDLSGGKLGILDKSAVFVAKTEQQITQTSTTAGVTTN AGYVVKKLTDAEIGTLNAATPDTNADPSVYSNGTVNYLRLSENTWVKVTATNPSSGTT TVAAAYRDTGSNDWFYDTTGAPTSVARSLGLSVSTLDLDNLDVVAAAMSGFSGGTTNY TASDAIDVMMSFVDKQLEAMTSTASSLGSLQSRINMQENFVSTLMDVIDKGIGRLVDA DMNEESTRLKALQTQQQLGIQALSIANANAQNILQLFK" misc_feature 513282..>514103 /gene="flaD" /locus_tag="AGROH133_03970" /note="Flagellin and related hook-associated proteins [Cell motility and secretion]; Region: FlgL; COG1344" /db_xref="CDD:31535" misc_feature 513288..513689 /gene="flaD" /locus_tag="AGROH133_03970" /note="Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669" /db_xref="CDD:144315" misc_feature <513939..514568 /gene="flaD" /locus_tag="AGROH133_03970" /note="Flagellin and related hook-associated proteins [Cell motility and secretion]; Region: FlgL; COG1344" /db_xref="CDD:31535" misc_feature 514308..514565 /gene="flaD" /locus_tag="AGROH133_03970" /note="Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700" /db_xref="CDD:144340" gene 514823..515473 /locus_tag="AGROH133_03971" /db_xref="GeneID:10266271" CDS 514823..515473 /locus_tag="AGROH133_03971" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277819.1" /db_xref="GI:325291955" /db_xref="GeneID:10266271" /translation="MSASIARYLKDFGDVQPAGLTFGEPLADVDGISGFGDIASGFDE FEPLDVESEKQAAYARGHEDATREITEKMQAEREELLAAHAAELEGLRSVYLEEIAVF LSLRLREGIDAIATNLSEQTANILAPVLTEELSLKAVSALADVVRASMPDGEAVTLVV KGPKDLFEQLKTQPGFEEETMKFIETADIDLSVELGESVFVTRMSAWASSLRKVMK" gene 515470..516756 /gene="motB" /locus_tag="AGROH133_03972" /db_xref="GeneID:10266272" CDS 515470..516756 /gene="motB" /locus_tag="AGROH133_03972" /note="with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Flagellar motor protein" /codon_start=1 /transl_table=11 /product="flagellar motor protein MotB" /protein_id="YP_004277820.1" /db_xref="GI:325291956" /db_xref="GeneID:10266272" /translation="MSEGENHHHGKNEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMM AFFLVMWLVNAANEETKASVASYFNPIKLSDEKPSSKGLEKPVDKEEGVEKKDQSNIK AEKVTQGSAAATGEDLTSQTGEQSNFSEADFFENPYSVLAEIAQQVGQQANVSAKGEG GAADSGPATGASGGEAYRDPFDPDFWTQQVKITRADQQQNPVEQQQSAENKQQDPAKD NEAVAAKSSQQPVDGADHGKAMEIAAVVPQQRPGAAEQAALTQPQPEQQQQGTAAQKE EAKELREEIEKQISGISGKLAEGLVVTPAEGGLLLTISDQTETPMFNVGSAVPRGEMV LAMEKIGKLLQERGGSVVIRGHTDGRQFKGEANDNWRLSMDRAHSAYYMLVRGGLSEE RVKQVSGFADRRLQVPADPLANANRRIEILLEADRG" misc_feature 515473..516750 /gene="motB" /locus_tag="AGROH133_03972" /note="flagellar motor protein MotB; Validated; Region: motB; PRK05996" /db_xref="CDD:168338" misc_feature 515491..>515709 /gene="motB" /locus_tag="AGROH133_03972" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cl02931" /db_xref="CDD:194484" misc_feature 516433..516738 /gene="motB" /locus_tag="AGROH133_03972" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature order(516439..516444,516538..516543,516559..516561, 516571..516576,516583..516585,516718..516720) /gene="motB" /locus_tag="AGROH133_03972" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene 516759..518030 /gene="motC" /locus_tag="AGROH133_03974" /db_xref="GeneID:10266273" CDS 516759..518030 /gene="motC" /locus_tag="AGROH133_03974" /note="a periplasmic protein that interacts with and stabilizes MotB; in Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation" /codon_start=1 /transl_table=11 /product="Chemotaxis protein motC" /protein_id="YP_004277821.1" /db_xref="GI:325291957" /db_xref="GeneID:10266273" /translation="MTKSSKRWVFLAATLCGLGAEPAKVFAQSQDNLMPYAMLRSLQF VQDSVTMGDHSATEMQRFLLQTIDERLKSAPSAIFKDPRNVDAALVYAMSGGNPATLE LLVARDVDGNFDSRVADILRKYLSGKGTLVAQSIAAMVPEYRGTRIGAYLALIGGNVT IPRDPVAALGFYDIARLEAPGTIVEEAALRRSLAIAVEDGDAGRGVEYAQRYARRFLH SPYASQFADLLVSLVVKRVDSIGHDTIEETFAMMDAERQKEAYLRLSRLAAISGKDSL ARMAALKAKALSPDMPDQPQVQANLYESLSNIGTPDVVSAIETIGQIPEAQLSDRDRA LRDAARAIADQVVRPPSPQPGADPGVTAGQGAGSGAPANEAASAETKGIWRVENHKAE DEGENVRQLVTSGRSKLDEIDSLLKKGEGAP" misc_feature 516768..518021 /gene="motC" /locus_tag="AGROH133_03974" /note="chemotaxis protein; Reviewed; Region: PRK12798" /db_xref="CDD:183755" gene 518027..519382 /gene="fliK" /locus_tag="AGROH133_03976" /db_xref="GeneID:10266274" CDS 518027..519382 /gene="fliK" /locus_tag="AGROH133_03976" /note="Flagellar hook-length control protein" /codon_start=1 /transl_table=11 /product="chemotaxis MotD protein" /protein_id="YP_004277822.1" /db_xref="GI:325291958" /db_xref="GeneID:10266274" /translation="MIDATINAIVNAPYNDPRAGSASVRDDAKGGSFGDTLATVREER PPQAPHSRHQQEAGSAEEQHAQPDDDAEKTDVPVKRPPSFLNVLVKDHSGEGHGHEAL AELQNAIKTAHTSSENGKPGKKVKDADKESQTAADATDPKLAELQTLTANVGDIVTAK TPLEEIAQAIAGKADVKSEKVETVRGRAEPLSKDVHARTELAGNEAGSGSGTEGDASA FRFASPRSGTARALDMSTVQRDGRVEFDARESSGKATETITVLDSRRFIGLAPSSNAS ALTGLIANDSEWVSAMQPGSSLSNEAAQSSTGKVVHTLKLHMTPIELGSVTMSLRLAG DELAVHMTVENVAAYKKLQQDSKSILEGLKAQGLTVDNITISIASSDKSDQTGTQANN QQNQQAQQQGQQAAAGRNRDESGTRGGRQGNGDNLGVHNEGMDGALGSARTSADNGVY L" misc_feature 518927..519178 /gene="fliK" /locus_tag="AGROH133_03976" /note="Flagellar hook-length control protein FliK; Region: Flg_hook; cl14669" /db_xref="CDD:196811" gene 519318..519896 /locus_tag="AGROH133_03977" /db_xref="GeneID:10266275" CDS 519318..519896 /locus_tag="AGROH133_03977" /note="Lytic transglycosylase-like, catalytic; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277823.1" /db_xref="GI:325291959" /db_xref="GeneID:10266275" /translation="MKAWMALLALPALLLTTAFTSENASASATSGVCEREIQSAARKY GVPEGILYSVGLTETGRKGRLDPNAMNIEGKPVFASSTEEALTTFETAKRNGAKLIDL GCMQINHYFHGENFTSAREMFDPRRNVEYAAMFLRNLHNRHETWTMAVARYHAGPNND PAQKKYVCRVIANLVATGYGKWTANAKNFCDG" misc_feature <519375..519890 /locus_tag="AGROH133_03977" /note="Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741" /db_xref="CDD:31084" misc_feature <519618..519836 /locus_tag="AGROH133_03977" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(519639..519641,519720..519722,519774..519776) /locus_tag="AGROH133_03977" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" gene 520179..520850 /gene="rem" /locus_tag="AGROH133_03979" /db_xref="GeneID:10266276" CDS 520179..520850 /gene="rem" /locus_tag="AGROH133_03979" /note="CheY-like, Transcriptional regulatory protein, C terminal; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="Response regulator of exponential growth motility" /protein_id="YP_004277824.1" /db_xref="GI:325291960" /db_xref="GeneID:10266276" /translation="MIVVVDERELVKDGYTSLFGREGIPSTGFDPVEFGEWVSTAADS DLAAVEAFLIGQGDRSFSLPKAIRDRTTAPVIAVSDQPSLESTLALFDSGVDDVVRKP VHPREILARAAAIRRRLQVISNFTDAGPIRVFSDGRDPEVGGEVFALPRRERRILEYL IANRGRRVSKAQIFNAIYGIFDDDVEENVVESHISKLRKKLRKKLGYDPVDSKRFLGY SIDWQ" misc_feature 520179..520841 /gene="rem" /locus_tag="AGROH133_03979" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 520560..>520763 /gene="rem" /locus_tag="AGROH133_03979" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(520626..520628,520683..520688,520743..520745, 520752..520754) /gene="rem" /locus_tag="AGROH133_03979" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 520866..520958 /locus_tag="AGROH133_03981" /db_xref="GeneID:10266277" CDS 520866..520958 /locus_tag="AGROH133_03981" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277825.1" /db_xref="GI:325291961" /db_xref="GeneID:10266277" /translation="MVFFKRGISDSFTQAKRFTFSLKMTTRVFE" gene 520955..522235 /gene="flgE" /locus_tag="AGROH133_03982" /db_xref="GeneID:10266278" CDS 520955..522235 /gene="flgE" /locus_tag="AGROH133_03982" /note="the hook connects flagellar basal body to the flagellar filament" /codon_start=1 /transl_table=11 /product="Flagellar hook protein FlgE" /protein_id="YP_004277826.1" /db_xref="GI:325291962" /db_xref="GeneID:10266278" /translation="MSIFGTMRTGVSGMNAQANKLGTVGDNIANASTTGYKRASTSFS SLVLPSSSGSYASGGVQSNVRYSISEQGNLSYTTSSTDLAIQGNGFFVVQDGGGTPYL TRAGSFVKNAEGYLENAAGFQLMGYPYGANAPAAVVNGFTGLEAVNVNNFGLTASPST QGSFPANLNRDEAAVAAGSRPSDNLATSTIGNKTSLTAYDSGGAKVLYDFYYTKTGAN TWEVAVYRQDQSTNGGFPYTATPAANLVKESVTLAFDPATNKLTPTSQKSITINDTVS GVPQAISIDLSDMSQFSTKFTPGTAILNGNGPSQIKDVEIGKDGVVTAVYQDGGRRNI YQLAVATVPSVDNLSPQNGNVYLPSNESGVVTIGFPQTGSFGYIQKGALEGSNVDIAS ELTDMIESQRIYTANSKVFQTGSDLMDVLINLKR" misc_feature 520967..522229 /gene="flgE" /locus_tag="AGROH133_03982" /note="flagellar hook protein FlgE; Validated; Region: flgE; PRK05682" /db_xref="CDD:180198" misc_feature 520973..521065 /gene="flgE" /locus_tag="AGROH133_03982" /note="Flagella basal body rod protein; Region: Flg_bb_rod; cl15245" /db_xref="CDD:197453" misc_feature 521513..521872 /gene="flgE" /locus_tag="AGROH133_03982" /note="Flagellar basal body protein FlaE; Region: FlaE; pfam07559" /db_xref="CDD:191784" misc_feature 521888..522166 /gene="flgE" /locus_tag="AGROH133_03982" /note="flagellar basal-body rod protein FlgF; Region: flgF; TIGR02490" /db_xref="CDD:188226" misc_feature 522110..522226 /gene="flgE" /locus_tag="AGROH133_03982" /note="Domain of unknown function (DUF1078); Region: DUF1078; pfam06429" /db_xref="CDD:191521" gene 522258..523736 /gene="flgK" /locus_tag="AGROH133_03983" /db_xref="GeneID:10266279" CDS 522258..523736 /gene="flgK" /locus_tag="AGROH133_03983" /note="with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; Flagellar hook-associated protein" /codon_start=1 /transl_table=11 /product="flagellar hook-associated protein FlgK" /protein_id="YP_004277827.1" /db_xref="GI:325291963" /db_xref="GeneID:10266279" /translation="MSLTSAMNTAQSIFNNTGKQTDVTSKNIANVGNANYVKRTAILG TTMSGASIVANGRAQNESLLRQTISSASLASGQKTVLTGLEEMKSLFGGNDYESSPAT YMKELLKSLDGYASKPSDSALAATAVTSAVDVANSLNKASSELQAMRLRADKEMSLQV DKLNGLLAKFEEANNEVKAQTAIGGNPSDALDQRETLLKDISSIIGINVVNRENNDVA LYTADGATLFEVVPRKVTFKAQPGYDATVTGNAIYVDGVAIKASSGSNTTAEGSLQGL MQVRDDLAPTMQSQLDEIARGLITMFAEKPASPTSTLPKMPGLFTYGSPAATTIPASG VVSPGLAASITVNPALIISKGGNPELLRDGGINGTAYVINSTTSGGTGFSALIDSYVT AFDAPMNFAASTRIDTNTSILKYGTNSVGWLEQERSGATSANEAKSALYERSATSYSN NTAVSLDEELSLLMDIEQSYKAATKLVTTIDDMLKSLMDMVR" misc_feature 522258..523730 /gene="flgK" /locus_tag="AGROH133_03983" /note="flagellar hook-associated protein FlgK; Validated; Region: flgK; PRK07521" /db_xref="CDD:181014" misc_feature 523617..523727 /gene="flgK" /locus_tag="AGROH133_03983" /note="Domain of unknown function (DUF1078); Region: DUF1078; pfam06429" /db_xref="CDD:191521" gene 523740..524843 /gene="flgL" /locus_tag="AGROH133_03984" /db_xref="GeneID:10266280" CDS 523740..524843 /gene="flgL" /locus_tag="AGROH133_03984" /note="with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella; Flagellin and related hook-associated proteins" /codon_start=1 /transl_table=11 /product="flagellar hook-associated protein FlgL" /protein_id="YP_004277828.1" /db_xref="GI:325291964" /db_xref="GeneID:10266280" /translation="MKTSFISSLAMQNSMRSTILKAQLEMTNLNTELTTGKHADLGVT LGANTARSLDLNRDVDRLSSLVSVNSIATQRLKSSQAALDGMAKAAQEIQKVLVPNTS SAAPTLATVAKTISNAFNTFTGFANTAVSGEFLFSGINTDVKPIDDYFAEGSTLKAAY EVELNAFMAAQTPAVGNIADLSKDQAAAFMTRIEGVFNGTTPVTNPPHSDLTAGQNYD FWTTYGSKASDTNMTSRISQNEVVETSTNSNSQGMRYFAMTAMTAMTFLDDKVPSDVR ELVATRSVTNIGTVISGLNQQQSQLGLSESRVSKANDSLAAQKKIIETHLLDIEGIDT YEVKTRLDLLQQQIEIAYSLTSRLQKMSLVNYL" misc_feature 523740..524840 /gene="flgL" /locus_tag="AGROH133_03984" /note="flagellar hook-associated protein FlgL; Validated; Region: flgL; PRK06008" /db_xref="CDD:168344" misc_feature 523755..524162 /gene="flgL" /locus_tag="AGROH133_03984" /note="Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669" /db_xref="CDD:144315" misc_feature <524658..524840 /gene="flgL" /locus_tag="AGROH133_03984" /note="Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700" /db_xref="CDD:144340" gene 524878..525222 /gene="flaF" /locus_tag="AGROH133_03985" /db_xref="GeneID:10266281" CDS 524878..525222 /gene="flaF" /locus_tag="AGROH133_03985" /note="acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; Flagellar biosynthesis regulator FlaF" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis regulatory protein FlaF" /protein_id="YP_004277829.1" /db_xref="GI:325291965" /db_xref="GeneID:10266281" /translation="MYQFSYAEIMEDGVADAKDRERQALTKSIDLLVEAKDSSSQRHT IEALFYTRRVWIRFIEDLKQPENQLAMELRANLISIAIWILKECELIRKRQSTNFQGI IDVTTIIRDGLK" misc_feature 524878..525219 /gene="flaF" /locus_tag="AGROH133_03985" /note="Flagellar protein FlaF; Region: FlaF; cl11454" /db_xref="CDD:187050" gene 525219..525668 /gene="flbT" /locus_tag="AGROH133_03986" /db_xref="GeneID:10266282" CDS 525219..525668 /gene="flbT" /locus_tag="AGROH133_03986" /note="post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; Flagellar biosynthesis regulator FlbT" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis repressor FlbT" /protein_id="YP_004277830.1" /db_xref="GI:325291966" /db_xref="GeneID:10266282" /translation="MKSTLRISLKSGEKIFINGAVLRVDRKVALEFLNDVTFLLENHV LQPEQATTPLRQLYFIAQMILINPEGREQSTNLFRKSVSMLLNCFQHEEILAELKRID GLVASGKAFEALKAIRGLYPTEEKILNNQEMTPATIEQIRKEIAPWR" misc_feature 525219..525662 /gene="flbT" /locus_tag="AGROH133_03986" /note="Flagellar protein FlbT; Region: FlbT; cl11455" /db_xref="CDD:187051" gene 525659..526129 /gene="flgD" /locus_tag="AGROH133_03987" /db_xref="GeneID:10266283" CDS 525659..526129 /gene="flgD" /locus_tag="AGROH133_03987" /note="acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; Flagellar hook capping protein" /codon_start=1 /transl_table=11 /product="flagellar basal body rod modification protein" /protein_id="YP_004277831.1" /db_xref="GI:325291967" /db_xref="GeneID:10266283" /translation="MAVDAVTSAASNPWANAGASSNDKSAASLNYDSFLKLLIAQMKN QDPTSPMDAGQQMSQLASFSQVEQTIKTNTHLKSMLQAEALTRASDLVGKTVKSADDK VTGVVKEVEVYSDGVVAITEAGDKVLLQAGVTFSNGPIATTPDSGTDSDVPAGS" misc_feature 525659..526066 /gene="flgD" /locus_tag="AGROH133_03987" /note="Flagellar hook capping protein; Region: FlgD; cl04347" /db_xref="CDD:194838" gene 526179..526445 /gene="fliQ" /locus_tag="AGROH133_03988" /db_xref="GeneID:10266284" CDS 526179..526445 /gene="fliQ" /locus_tag="AGROH133_03988" /note="FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; Flagellar biosynthesis pathway, component FliQ" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FliQ" /protein_id="YP_004277832.1" /db_xref="GI:325291968" /db_xref="GeneID:10266284" /translation="MNEADALDIMQAAVWTVLVAAGPAVLAAMIVGVAIAFIQALTQV QEMTLTFVPKIVTIMIVLGVAAPFVGAQIALFSNLVFSRVQSGF" misc_feature 526179..526442 /gene="fliQ" /locus_tag="AGROH133_03988" /note="Bacterial export proteins, family 3; Region: Bac_export_3; cl00867" /db_xref="CDD:186229" gene 526605..528692 /gene="flhA" /locus_tag="AGROH133_03991" /db_xref="GeneID:10266285" CDS 526605..528692 /gene="flhA" /locus_tag="AGROH133_03991" /note="membrane protein involved in the flagellar export apparatus; Flagellar biosynthesis pathway, component FlhA" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FlhA" /protein_id="YP_004277833.1" /db_xref="GI:325291969" /db_xref="GeneID:10266285" /translation="MAQPPVISLPKVSPSMRDVGFALGIVSILCVLFLPIPVVLVDVG LAFSIALSVLILMVALWIQRPLDFSSFPTVLLIATMIRLSLNIATTRVILSHGNEGPT AAGGVIAGFSSLVMSGDFVIGLIVFLILITVNFIVITKGATRIAEVGARFTLDAIPGK QMSIDADLSAGIIDEKEAQRRRRELEEESSFFGSMDGASKFVRGDAIAGLIITAINIF GGIIIGYFRHGMPIGEAADVFVKLSVGDGIVSQIPALIVSLAAGLLVSRGGTSGSTDQ AVINQLSGYPRALMVAAMLMGLLAVMPGLPFLPFTLLGGIMAFGSWYIPRQVEAESAQ RRQEEEDKVLQTNEAEKDSVKQVLKTSEIELALGKQVSTRLLGAHQELAFRVGKMRKK FATQYGFVVPEIKVSDDIMIPEKAYQIRVHGTTIASSNLRVGDVLVVTGAGRKPSIPG DEIREPAFGMPAVSILETFTEDLKREGFHPIDNVSVVLTHLSEVIRNNLPQLLSYKDV KILIDRLDPEYKKLADEICSSHMSYSGLQAVLKLLLAERVSIRNLHLILEAVAELAPH VRKTEQIVEHVRVRMSQQLCGDLADNGVLRVLRLGNKWDMVFHQALKRDQKGEIVEFD IDPRHLEEFSEQASKVIREFMDRGLPFVLVTSPETRSYVRMIIERLFATLPVLSHVEL AKGLEIKILGAIS" misc_feature 526605..528689 /gene="flhA" /locus_tag="AGROH133_03991" /note="flagellar biosynthesis protein FlhA; Validated; Region: flhA; PRK06012" /db_xref="CDD:180350" misc_feature 526626..528689 /gene="flhA" /locus_tag="AGROH133_03991" /note="Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlhA; cl07980" /db_xref="CDD:195651" gene 528689..529444 /gene="fliR" /locus_tag="AGROH133_03998" /db_xref="GeneID:10266286" CDS 528689..529444 /gene="fliR" /locus_tag="AGROH133_03998" /note="FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; Flagellar biosynthesis pathway, component FliR" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FliR" /protein_id="YP_004277834.1" /db_xref="GI:325291970" /db_xref="GeneID:10266286" /translation="MITDPQGTIIALFLAICRIGACFMTMPGFSSSRISPQIRILLCV AVSMALLPVLWDTIYPKVSGASQGAVVGLIFTEIVIGAMYGLIARFYTLGFQFTGALI GASIGLSAPGGADAVEDVQENQISNFITFGGLMVLFILDFHHIVLRALVDSYATTPVG ALISGQKMLITLTDTLRASFSIMLRLASPFVIYGLMFNVAVGLINKLAPQIPVYFIST PFVLAGGIFMLYLSIAALIRQFVDGFGPVFIGF" misc_feature 528704..529432 /gene="fliR" /locus_tag="AGROH133_03998" /note="Bacterial export proteins, family 1; Region: Bac_export_1; cl00734" /db_xref="CDD:186167" gene 529460..529879 /locus_tag="AGROH133_04006" /db_xref="GeneID:10266287" CDS 529460..529879 /locus_tag="AGROH133_04006" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277835.1" /db_xref="GI:325291971" /db_xref="GeneID:10266287" /translation="MASDKRSAKLKRLVTVQRHMEKMAEVELADTTRVRAEVAQSMEN VLEAMSSMEPVHQTFSRHYSDRYGRLVVKDRQLSGVQQLQENKVLKEKTKADRLEDRM HLARDLEDREADDNAIYDLLEITNASRTPASSKVGDP" gene 529995..530552 /locus_tag="AGROH133_04007" /db_xref="GeneID:10266288" CDS 529995..530552 /locus_tag="AGROH133_04007" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277836.1" /db_xref="GI:325291972" /db_xref="GeneID:10266288" /translation="MAISVISDLVMDVVRAADPQEVQVAQEKLKANKAAFAATSLADS GKGFGAAIDMLDSATSKAGLGNTNIRSARTEVPETYRKYEASVLQTFVANMLPKDSEE VYGKGNAGEIWKSMMAEQFADTISRNGGVGIAEQAYKDALRKAESKGITDVSMNDKDH NAAIRMVAEFERQVLGVSNDKTDEA" misc_feature 530286..530411 /locus_tag="AGROH133_04007" /note="Rod binding protein; Region: Rod-binding; cl01626" /db_xref="CDD:194178" gene 530582..530950 /locus_tag="AGROH133_04008" /db_xref="GeneID:10266289" CDS 530582..530950 /locus_tag="AGROH133_04008" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277837.1" /db_xref="GI:325291973" /db_xref="GeneID:10266289" /translation="MDLMSNDHRIKSVLGRLEMIIDNENDNIGKDPQFDFKVSNAHKS RCLYELTMLFRDTPHEEIAAGHLDQVQGIKSKLATNASRVEAHLNAVRAVADLLKTAI QEADTDGTYSQEQFMYGAAS" gene 530950..531486 /locus_tag="AGROH133_04009" /db_xref="GeneID:10266290" CDS 530950..531486 /locus_tag="AGROH133_04009" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277838.1" /db_xref="GI:325291974" /db_xref="GeneID:10266290" /translation="MLKLLLTGVWVCAVTLGAVYFSVQMATAPSSGDEAGAKKASLQL VKGESITIPVINDGGVNGYFLSRISLRVDKDKMAKIELPATQLMTDELFTLLAGSSMV NIANISTFDPDVFKQRIREGLNKKLGDEVVGDVLIEQLDYLSKADIREQKGNGSPRSV KLVEGEKVDTGKEAAPSH" gene 531664..532338 /gene="tagA" /locus_tag="AGROH133_04012" /db_xref="GeneID:10266291" CDS 531664..532338 /gene="tagA" /locus_tag="AGROH133_04012" /note="glycosyl transferase WecB/TagA/CpsF; Teichoic acid biosynthesis proteins" /codon_start=1 /transl_table=11 /product="teichoic acid biosynthesis protein" /protein_id="YP_004277839.1" /db_xref="GI:325291975" /db_xref="GeneID:10266291" /translation="MNFAADFARTGSQRNIHGLRVCDLDWNAALEMVSGQASACDGHT MLSFLTIQNARLSLKDIAYRQILESCLLLPQGRGMNAAARAEHGKPLPETIDGVAFVM ALLTYMAVPKRIGVAGDDAAQVGEVLAKLRAHAPWHDFVMLNRDTSGVKVDVVLAGML AENQEKWLHRSINRDDARLVIAVGPLFKVLASEVAGMPEIFRKLHMSWLYSLCAEPWH IALGKG" misc_feature 531859..532314 /gene="tagA" /locus_tag="AGROH133_04012" /note="The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common...; Region: Glyco_transf_WecG_TagA; cl04270" /db_xref="CDD:194818" gene 532452..534227 /locus_tag="AGROH133_04013" /db_xref="GeneID:10266292" CDS 532452..534227 /locus_tag="AGROH133_04013" /note="Uncharacterized protein involved in exopolysaccharide biosynthesis" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277840.1" /db_xref="GI:325291976" /db_xref="GeneID:10266292" /translation="MVDHSPDMMATRPDEDGVAVPASQFRKHCLRLLTAGCVAAATVV GAALPLLLIDSGFRGYVSQAHVEVTQTGYDAPDAARFLAMARRTLLSPSGLDRITGDL KLKPADMVGVRNQGELGLLFDLLTGADTRSLSPREALNGAVGEAIRLELTPDENTLIV TSKAATPETAMRLTDYLSMRVMADGKAGTMTPAMRETERARTRLDEAEAALNGFQMRH GETVLAEVQQLEQQLRDLNDSLAGTTQQQQSLQTDLAVATGLKPNDVLSKPLPSGAAF SVLEDIRQRHASASMALSGVSVDYGPKHPRRIAAQNAVDAVQALVAPALRQLVDGLRA DDKRVAQEVATANAERTKHLDRLSSLGVTPGEFSRLQGELETARNAYLEASERRDMSS STTTAVETRLTRKAGPGELSRDLTQAAMLAGGGALLGLLGSLYLLSYRRHDEEEALVL DDAHVLPSEKAPEQSGQFPEFEPIEPDVFHDLEELAADSEFEPEAEFADYYAGAANDS GFDTDDIPLDERVRQVLMGNRTVRNTPQTTPELPTLLSEALAGHFDHEQAEAEELAEL RRELALLRERLADYAEHRDDYRKTA" misc_feature 532629..533681 /locus_tag="AGROH133_04013" /note="Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]; Region: GumC; COG3206" /db_xref="CDD:33019" gene 534305..535204 /gene="folD" /locus_tag="AGROH133_04015" /db_xref="GeneID:10266293" CDS 534305..535204 /gene="folD" /locus_tag="AGROH133_04015" /EC_number="1.5.1.5" /EC_number="3.5.4.9" /note="Tetrahydrofolate dehydrogenase/cyclohydrolase; 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase" /codon_start=1 /transl_table=11 /product="methylenetetrahydrofolate dehydrogenase" /protein_id="YP_004277841.1" /db_xref="GI:325291977" /db_xref="GeneID:10266293" /translation="MAVVIDGKAKAASVTEAVRKSAETLEAEQGVKPGLAVVIVGNDP ASHAYVNSKSKTAKQCGFNSVQHTLPEETTQDQLLKLVGELNADPSIHGILVQLPLPK HFNADEIIQSILPEKDVDGLSVLNAGKLATGDLATGLISCTPAGAMLLVRSIHGEDLS GLNAVVIGRSNLFGKPMGQLLLNANATVTMAHSRTKDLATVCKTADILVAAVGRAAMV KGDWVKPGATVIDVGINRIPAPEKGEGKSKLVGDVAYDEASAVAAAITPVPGGVGPMT IAMLMANTVIAAYRALGKTAPKF" misc_feature 534305..535201 /gene="folD" /locus_tag="AGROH133_04015" /note="bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional; Region: PRK14188" /db_xref="CDD:184558" misc_feature 534311..534664 /gene="folD" /locus_tag="AGROH133_04015" /note="Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763" /db_xref="CDD:189708" misc_feature 534647..535168 /gene="folD" /locus_tag="AGROH133_04015" /note="NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080" /db_xref="CDD:133448" misc_feature order(534674..534679,534686..534688,534785..534787, 534791..534793,534809..534811,534836..534841, 534848..534850,534857..534874,534878..534880, 534884..534889,534914..534916) /gene="folD" /locus_tag="AGROH133_04015" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:133448" misc_feature order(534731..534733,534809..534814,534878..534883, 534938..534940,534944..534946,534953..534955, 534998..535000,535004..535006,535121..535123, 535130..535132) /gene="folD" /locus_tag="AGROH133_04015" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:133448" misc_feature order(535109..535114,535133..535135) /gene="folD" /locus_tag="AGROH133_04015" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133448" gene complement(535214..536239) /gene="aglR" /locus_tag="AGROH133_04016" /db_xref="GeneID:10266294" CDS complement(535214..536239) /gene="aglR" /locus_tag="AGROH133_04016" /note="Periplasmic binding protein/LacI transcriptional regulator; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator repressor" /protein_id="YP_004277842.1" /db_xref="GI:325291978" /db_xref="GeneID:10266294" /translation="MNLKQLSQLLGISQTTVSRALNGYPEVSAETRRRVMEAAEKTGY RPNAAAQRLATGKVGSIGLVMPVGEHHRSDVHFGEFLSGLGEEAARSGFHLVITPTEP EKEREALRGLAASGSVDGIYLAYMKKNDARIAMMQSLSLPFLVHGRSIGVEEDYPFLD VDNEAAFRDATQLLLQLGHKRIGLLNGPEGYDFTFRRCLGVEKALTANGLTLRPEHTR HSSMTDEEGYLGMEALLSQPERPTAIVCASTALALGVIRSLNQRGLKPGKDISLIAHD DVLPLLKPDNFSVPLTTTRSSLRAAGVRVGQRLINRIKLNQTEPHQELWKAELVVRAS TGPAPKE" misc_feature complement(535223..536239) /gene="aglR" /locus_tag="AGROH133_04016" /note="Transcriptional regulators [Transcription]; Region: PurR; COG1609" /db_xref="CDD:31797" misc_feature complement(536075..536230) /gene="aglR" /locus_tag="AGROH133_04016" /note="Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392" /db_xref="CDD:143331" misc_feature complement(order(536078..536083,536087..536092, 536099..536101,536108..536110,536147..536149, 536156..536161,536174..536176,536183..536188, 536192..536206,536228..536230)) /gene="aglR" /locus_tag="AGROH133_04016" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature complement(536081..536110) /gene="aglR" /locus_tag="AGROH133_04016" /note="domain linker motif; other site" /db_xref="CDD:143331" misc_feature complement(535250..536062) /gene="aglR" /locus_tag="AGROH133_04016" /note="Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_AglR_RafR_like; cd06271" /db_xref="CDD:107266" misc_feature complement(order(535412..535414,535496..535498, 535649..535651,535757..535768,535802..535807, 536000..536002,536012..536014)) /gene="aglR" /locus_tag="AGROH133_04016" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107266" gene 536515..537876 /gene="aglE" /locus_tag="AGROH133_04018" /db_xref="GeneID:10266295" CDS 536515..537876 /gene="aglE" /locus_tag="AGROH133_04018" /note="Bacterial extracellular solute-binding protein, family 1; ABC-type sugar transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="alpha-glucoside ABC transporter substrate-binding protein" /protein_id="YP_004277843.1" /db_xref="GI:325291979" /db_xref="GeneID:10266295" /translation="MQKTFLATAASIVLLSGSAFAADLKFAPGQDAKFNWKSYEDFKA AHADLKGQTLTIFGPWRGEDEALFQTVLAYFSDATGVNVRYSSSENYEQQIVIDTQAG SPPNIAILPQPGLLADLAAKGFLVPLGDETANWVKDNYGAGQSWVDLGSYKGKDSNKA YFAFPFKADVKSLVWYVPENFEEAGYKVPESMEDLFKLTDQIVADGGTPWCIGLGSGG ATGWPATDWVEDLMLRTQPLDVYQKWTTNEVKFTDPAVVAAINEFGKFAKNEKYVSGG VAAVASTDFRDSPKGLFDIPPKCYLHHQASFVPSFFPDGTKVGTDVDFFYMPTYAAKP ELGKPVLGAGTLVTITKEAPAAKAFVDFLKTPIAHEVWMAQSSFLTPYKGVNVDTYAN EQMKRQGEILTSATTFGFDGSDLMPGKIGAGAFWTGMIDFVGGKSADQVAADIQKAWD GLK" misc_feature 536644..537864 /gene="aglE" /locus_tag="AGROH133_04018" /note="ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653" /db_xref="CDD:31839" gene 537983..538996 /gene="aglF" /locus_tag="AGROH133_04020" /db_xref="GeneID:10266296" CDS 537983..538996 /gene="aglF" /locus_tag="AGROH133_04020" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type sugar transport systems, permease components" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004277844.1" /db_xref="GI:325291980" /db_xref="GeneID:10266296" /translation="MAQQLVSAIGVMVAGVFACAAYYWLSDKLLQVIFPVRSGDVLQA SRNLNRRASVRPWLFIGPALLLLLVYLVYPVIATLILSFYDRTGAEFVGLANYRWAFF DAGFRQSIFNNILWLAVVPAACTFFGLVIAVMTDRIWWGNIAKSIVFMPMAISFVGAS VIWKFIYEYRAEGQVQIGLLNAVVEFFGGSPEVWISMPFWNNFFLMVILIWIQTGFAM VILSAALRGIPEETIEAAVIDGAYGWQIFWKIMVPQIWGTIAVVWTTITILVLKVFDI VLTMTNGQWNTMVLANLMFDWMFRGGGDSGRSAVIALVIMAAVTPIMVWNIRQANREM EGR" misc_feature 538130..538954 /gene="aglF" /locus_tag="AGROH133_04020" /note="ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177" /db_xref="CDD:31370" misc_feature 538247..>538747 /gene="aglF" /locus_tag="AGROH133_04020" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" misc_feature <538562..538939 /gene="aglF" /locus_tag="AGROH133_04020" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(538598..538600,538814..538816,538850..538852, 538862..538864,538892..538894) /gene="aglF" /locus_tag="AGROH133_04020" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(538613..538618,538622..538624,538628..538630, 538637..538642,538646..538648,538658..538663, 538670..538672,538721..538723,538763..538768, 538775..538777,538796..538807,538814..538819, 538859..538864,538892..538897,538904..538909, 538913..538918,538925..538930,538937..538939) /gene="aglF" /locus_tag="AGROH133_04020" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(538673..538711,538727..538732,538742..538744) /gene="aglF" /locus_tag="AGROH133_04020" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 538998..540158 /gene="aglG" /locus_tag="AGROH133_04028" /db_xref="GeneID:10266297" CDS 538998..540158 /gene="aglG" /locus_tag="AGROH133_04028" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type sugar transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004277845.1" /db_xref="GI:325291981" /db_xref="GeneID:10266297" /translation="MDIVKRLRRVGLPRLIVHASVLVVVLLWLLPTLGILVSSLRDKD QITVSGWWTAFSSSEQTAAVRLADAAVQKQDGNRYVISGNVFESGQGGKVAAFGVRVQ EPTAFKAGEAADIGDGETLLVNTDGTYEYSKASSFEGSRGKRVYISVATPPVFTLDNY RTVLTSEGIGQSFVNSLTVAVPATVIPILIAAFAAYALSWMSFSGRNFLIAMVVGLIV VPLQMSLIPLLKLYNEIGNIFGVPSKTYAGIWLAHTAFGLPLAIYLLRNYISGLPKEI IESARVDGASDFEIFVKIILPLSFPALASFAIFQFLWTWNDLLVAMVFLGTQKDELVL TGALNALLGSRGGNWEILTASAFVTIVVPLGVFFALQRYLVRGLLSGSVKGG" misc_feature 539514..540089 /gene="aglG" /locus_tag="AGROH133_04028" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(539562..539567,539574..539579,539592..539594, 539622..539633,539637..539666,539673..539678, 539682..539684,539760..539765,539769..539771, 539775..539777,539784..539789,539793..539795, 539805..539810,539817..539819,539868..539870, 539910..539915,539922..539924,539943..539954, 539964..539969,540006..540011,540039..540044, 540051..540056,540060..540065,540072..540077, 540084..540089) /gene="aglG" /locus_tag="AGROH133_04028" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(539640..539684,539943..539960) /gene="aglG" /locus_tag="AGROH133_04028" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(539682..539684,539742..539744,539964..539966, 540000..540002,540009..540011,540039..540041) /gene="aglG" /locus_tag="AGROH133_04028" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(539820..539858,539874..539879,539889..539891) /gene="aglG" /locus_tag="AGROH133_04028" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 540165..541850 /gene="aglA" /locus_tag="AGROH133_04036" /db_xref="GeneID:10266298" CDS 540165..541850 /gene="aglA" /locus_tag="AGROH133_04036" /EC_number="3.2.1.20" /note="glycoside hydrolase, catalytic core, Alpha amylase, catalytic domain, trehalose_treC: alpha,alpha-phosphotrehalase; glycosidases" /codon_start=1 /transl_table=11 /product="alpha-glucosidase" /protein_id="YP_004277846.1" /db_xref="GI:325291982" /db_xref="GeneID:10266298" /translation="MNAHTRQDETMTAPVTSALTPNKDWWRGAVIYQIYPRSYQDSNG DGIGDLKGITDRLAHIAGLGADAIWISPFFTSPMKDFGYDVSNYVDVDPMFGTLADFD GLIAEAHRLGIRVMIDLVMSHTSDQHPWFVESRASRNNPKSEWYVWSDSKPDGTPPNN WLSIFGGSGWQWDPTRMQYYMHNFLTSQPDLNLHNPEVQEELLNITRFWLKRGVDGFR LDTINFYFHDLELRDNPALAPERRNASTAPAVNPYNFQEHLYDKNRPENIAFLKRFRA VLDEFPDIAAVGEVGDSQRGLEIVGEYTSGDDKMQMCYAFEFLAPDALTPQRVADVQA DFARAAPEGWACWAFSNHDVVRHVSRWGEHVEDKDAFAKVLSALLMTQRGSVCIYEGE ELGLTEADIAFEDLQDPYGIQFWPEFKGRDGCRTPMVWDAGHAQAGFSTSDKTWLPIP AEHKQRAVSAQQGNEASVLEHYRRFLSFRKKHPAFAKGGIEFQPVEGDVLSYTRTLGN ETVLCLFNLSATSAKATLPEGNWEVLEGHGFASDVDGRSVELPAWGAFFARYA" misc_feature 540237..541766 /gene="aglA" /locus_tag="AGROH133_04036" /note="alpha,alpha-phosphotrehalase; Region: trehalose_treC; TIGR02403" /db_xref="CDD:162843" misc_feature 540306..541355 /gene="aglA" /locus_tag="AGROH133_04036" /note="Alpha amylase, catalytic domain; Region: Alpha-amylase; cl07893" /db_xref="CDD:164103" gene 541872..542960 /gene="aglK" /locus_tag="AGROH133_04037" /db_xref="GeneID:10266299" CDS 541872..542960 /gene="aglK" /locus_tag="AGROH133_04037" /note="ABC transporter related; ABC-type sugar transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277847.1" /db_xref="GI:325291983" /db_xref="GeneID:10266299" /translation="MTSLVLKDIRKSYGQVKVLHGIDLEIEQGEFIVFVGPSGCGKST LLRMIAGLEEITGGEMFIDGQLVNEIPPSRRGIAMVFQSYALYPHMTVYDNMAFGMKI AKENRQEIDRRVRAAAEILQLTQYLERLPKALSGGQRQRVAIGRAICRNPKVFLFDEP LSNLDAALRVATRIEIAKLNEQMADTTMIYVTHDQVEAMTLADRIVVLNAGRVEQVGP PLELYENPANLFVARFIGSPAMNIIAAKIAVTGERTSIELAGGKTLNIVVPTPATEQG KAASFGVRPEDLSIVTGDDYLFEGKVAIVEALGEVTLLYLEAPKGQEPIIVKVPGIVS VAKGQTLRFAAPQAKLHLFDAEGKNYRR" misc_feature 541872..542957 /gene="aglK" /locus_tag="AGROH133_04037" /note="glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650" /db_xref="CDD:183258" misc_feature 541881..542522 /gene="aglK" /locus_tag="AGROH133_04037" /note="The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two...; Region: ABC_MalK_N; cd03301" /db_xref="CDD:73060" misc_feature 541977..542000 /gene="aglK" /locus_tag="AGROH133_04037" /note="Walker A/P-loop; other site" /db_xref="CDD:73060" misc_feature order(541986..541991,541995..542003,542115..542117, 542343..542348,542448..542450) /gene="aglK" /locus_tag="AGROH133_04037" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73060" misc_feature 542106..542117 /gene="aglK" /locus_tag="AGROH133_04037" /note="Q-loop/lid; other site" /db_xref="CDD:73060" misc_feature 542271..542300 /gene="aglK" /locus_tag="AGROH133_04037" /note="ABC transporter signature motif; other site" /db_xref="CDD:73060" misc_feature 542331..542348 /gene="aglK" /locus_tag="AGROH133_04037" /note="Walker B; other site" /db_xref="CDD:73060" misc_feature 542355..542366 /gene="aglK" /locus_tag="AGROH133_04037" /note="D-loop; other site" /db_xref="CDD:73060" misc_feature 542436..542456 /gene="aglK" /locus_tag="AGROH133_04037" /note="H-loop/switch region; other site" /db_xref="CDD:73060" misc_feature 542715..542930 /gene="aglK" /locus_tag="AGROH133_04037" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene 543157..543570 /locus_tag="AGROH133_04038" /db_xref="GeneID:10266300" CDS 543157..543570 /locus_tag="AGROH133_04038" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277848.1" /db_xref="GI:325291984" /db_xref="GeneID:10266300" /translation="MQSSAGVIKNSYLTKEESFMYDREGRFRMEDTMNAARIEYTEKA VMHMAARRCDVIRISQTEAVLALLTKYNLPNQFYLDIPDARITKIGCVMLRVNANNTI HVRFLRMLTQKELDRIFVFSTHPAHKDRKLDIRSF" gene complement(543592..544956) /locus_tag="AGROH133_04039" /db_xref="GeneID:10266301" CDS complement(543592..544956) /locus_tag="AGROH133_04039" /note="5'-Nucleotidase and apyrase; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases" /codon_start=1 /transl_table=11 /product="Ser/Thr protein phosphatase family protein" /protein_id="YP_004277849.1" /db_xref="GI:325291985" /db_xref="GeneID:10266301" /translation="MTIFSSKRRDVLKLMAGTAILPLMVVATPAEAQDVALRAIVISD LHSAYERIGQLLAAIEMRIAADKAPHIILLNGDLFETGNAVATRSSGEIEWTFLSALA RLAPTVVNIGNHEPDIDNDLANFVSRARALDINVLSNIIDKRSGAPYAPASAEVSVGG RPVVVAGLATNAINTYPKATREMLDIPQPVEWAKANLPAIVKPEAINIVLSHAGVVAD RDILPLLPDGTLLVGGHDHLNFVHEQGATRYVHTGSWCTSMAIATIEAAGKAPTIETV AIDSDAPSSPALKGLIEQTLDKHLTAEEKAVVGKTEKAMTVDEAGRRVAQLIAAKTGA DVGFIGHTSFGAGLPRGDIRRYDFNASLRFDGKLMVTEVDGETLAQILKRCNQDGNIP LADRTGDYLYAMPEKPVARERYKLVCNDWSATNQKSYFGRSDLAFAEVPDVKLKQTVL GGLS" misc_feature complement(543670..544923) /locus_tag="AGROH133_04039" /note="5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]; Region: UshA; COG0737" /db_xref="CDD:31080" misc_feature complement(544129..544833) /locus_tag="AGROH133_04039" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" misc_feature complement(order(544252..544254,544321..544323, 544615..544620,544726..544728,544819..544821, 544825..544827)) /locus_tag="AGROH133_04039" /note="active site" /db_xref="CDD:163614" misc_feature complement(order(544252..544254,544321..544323, 544618..544620,544726..544728,544819..544821, 544825..544827)) /locus_tag="AGROH133_04039" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163614" misc_feature complement(<543751..544038) /locus_tag="AGROH133_04039" /note="5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872" /db_xref="CDD:190457" gene complement(545151..546971) /gene="edd" /locus_tag="AGROH133_04041" /db_xref="GeneID:10266302" CDS complement(545151..546971) /gene="edd" /locus_tag="AGROH133_04041" /EC_number="4.2.1.12" /note="catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; Dihydroxyacid dehydratase/phosphogluconate dehydratase" /codon_start=1 /transl_table=11 /product="6-phosphogluconate dehydratase" /protein_id="YP_004277850.1" /db_xref="GI:325291986" /db_xref="GeneID:10266302" /translation="MSADSRIQAITARIVERSKPYRETYLERLRLQVSKGVHRSTLSC GNLAHGFAVCSPADKDLLAGDRVGNLGIITAYNDMLSAHQPYETFPAIIREAAAQAGG VAQVAGAVPAMCDGVTQGQPGMELSLFSRDAIAMAAGIGLSHNMFDAAVYLGVCDKIV PGLVIAALSFGHLPSIFIPAGPMTTGLPNDEKSRIRQLYAEGKVGRAELLEAESKSYH GPGTCTFYGTANSNQMLMEIMGFHMPGSSFINPGTPLRDALTREAAKRALAITAQGNE FTPAGEMIDERSIVNGVVGLHATGGSTNHTMHLIAMARAAGIILTWQDISDLSDTVPL LARVYPNGLADVNHFHAAGGMGFLIKQLLKQGFVHDDVRTVFGQGLEAYTVDAKLDEN GAVTREPSPEQSHDPKVLASIETPFQPTGGLKMLTGNLGKSVIKISAVKPERHIIEAP AIVFNDQQELQDAFKDGKLNRDFIAVVRFQGPKANGMPELHRLTPPLGVLQDRGFKVA LVTDGRMSGASGKVPAAIHVTPEASECGPISLIRDGDIIRLDAISGTLEVLVPAAELA KREPARADLSANEWGMGRELFAPFRRNVGPADQGASVLFH" misc_feature complement(545157..546962) /gene="edd" /locus_tag="AGROH133_04041" /note="6-phosphogluconate dehydratase; Region: edd; TIGR01196" /db_xref="CDD:130264" misc_feature complement(545154..546959) /gene="edd" /locus_tag="AGROH133_04041" /note="Dehydratase family; Region: ILVD_EDD; cl00340" /db_xref="CDD:185921" gene complement(547095..547793) /gene="pgl" /locus_tag="AGROH133_04042" /db_xref="GeneID:10266303" CDS complement(547095..547793) /gene="pgl" /locus_tag="AGROH133_04042" /EC_number="3.1.1.31" /note="6-phosphogluconolactonase/Glucosamine-6- phosphate isomerase/deaminase" /codon_start=1 /transl_table=11 /product="6-phosphogluconolactonase" /protein_id="YP_004277851.1" /db_xref="GI:325291987" /db_xref="GeneID:10266303" /translation="MSETIHVFDTAAELAKTLAADVAARLDAATKEYGTASIAVSGGS TPKLFFQALSHHDLDWSNISVTLVDERFVPPESERSNYRLVSENLLQDKAKAAYFLPL FQPAASPEDAATLATVKTEAICDPFDVVVLGMGTDGHTASFFPGGDNLYEALDLDEPR GVLTMAAETAGEERLTFNFSSLHDAGFLVLHIEGAAKKATLEKAQSGEDEDEMPIRAV LNRAETAVDIYWAP" misc_feature complement(547098..547703) /gene="pgl" /locus_tag="AGROH133_04042" /note="6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard...; Region: 6PGL; cd01400" /db_xref="CDD:73166" misc_feature complement(order(547203..547205,547272..547274, 547377..547379,547581..547583,547659..547664)) /gene="pgl" /locus_tag="AGROH133_04042" /note="putative active site [active]" /db_xref="CDD:73166" gene complement(547804..549312) /gene="zwf" /locus_tag="AGROH133_04043" /db_xref="GeneID:10266304" CDS complement(547804..549312) /gene="zwf" /locus_tag="AGROH133_04043" /EC_number="1.1.1.49" /note="catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate" /codon_start=1 /transl_table=11 /product="Glucose-6-phosphate 1-dehydrogenase" /protein_id="YP_004277852.1" /db_xref="GI:325291988" /db_xref="GeneID:10266304" /translation="MPQPLKIESIDMSSQIIPVEAFDCVVFGGTGDLAERKLLPALYH RQVEGQFTEPTRIIGASRSVMSHEEYRKFAQDALKEHLKAGEYDDAQVALFLNRLFYV PVDAKSGNGWDVLKKLLDEGKERIRAFYLAVAPGIFGDIADKIREHKLITRSTRIVVE KPIGRDLASAQELNDTIGHVFKEEQIFRIDHYLGKETVQNLMALRFANALYEPLWNSA HIDHVQITVAEAVGLEGRAGYYDTAGALRDMVQNHILQLLCLVAMEPPASMNAEAVRD EKLKVLRSLKPINTSNVEKLTVRGQYRAGASAGGPVKGYLEELEGGVSNTETFVAIKA EIANWRWAGVPFYIRTGKRLATRVSEIVVTFKQIPHSIFDDAAGKIEANKLVIRLQPD EGVKQSLLIKDPGPGGMRLRQVSLDMSFAEAFNVRSPDAYERLLMDTIRSNQTLFMRR DEVEAAWDWVDPILKSWEELGQGVQGYTAGTWGPSGSIALIERDGRTWHDAD" misc_feature complement(547813..549273) /gene="zwf" /locus_tag="AGROH133_04043" /note="glucose-6-phosphate 1-dehydrogenase; Validated; Region: PRK05722" /db_xref="CDD:180222" misc_feature complement(548713..549240) /gene="zwf" /locus_tag="AGROH133_04043" /note="Glucose-6-phosphate dehydrogenase, NAD binding domain; Region: G6PD_N; pfam00479" /db_xref="CDD:144172" misc_feature complement(547810..548709) /gene="zwf" /locus_tag="AGROH133_04043" /note="Glucose-6-phosphate dehydrogenase, C-terminal domain; Region: G6PD_C; pfam02781" /db_xref="CDD:190422" gene complement(549417..549767) /locus_tag="AGROH133_04044" /db_xref="GeneID:10266305" CDS complement(549417..549767) /locus_tag="AGROH133_04044" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277853.1" /db_xref="GI:325291989" /db_xref="GeneID:10266305" /translation="MERPSDRLVTIATGYGMAETAVTCSFLRAYGIHTTVPSAHIVSV NWHLTVAFGGMEIRVPEWQRHEARLLLDSIDASHKVDEPSPRSWMGKIAAIVVFFFFS VPPPAKGLFKNPAF" gene complement(549794..551080) /gene="ordL" /locus_tag="AGROH133_04045" /db_xref="GeneID:10266306" CDS complement(549794..551080) /gene="ordL" /locus_tag="AGROH133_04045" /EC_number="1.-.-.-" /note="glycine/D-amino acid oxidases (deaminating)" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="YP_004277854.1" /db_xref="GI:325291990" /db_xref="GeneID:10266306" /translation="MTWQSPIAPGISWYQASAQERPQYPALDGSKAVDVAVVGGGYTG LQAAFNLAANGVSVALIEAHRFGDGASGRNGGQFGTGQRSFPDEMEDEIGFEQSKVLF DIAEDAKHYVLNFARDHGIDMEYLPGQLYVAHKAAYEDDYRKSVGAMNNRYGYPHISY MERADARRRVGSSHYFGGTRDTGTGHIHPLKLLVGLAKAAKEAGAGIHEMTPAKSIRQ AGGKTIIETPSGTLTATRVLIATNAYIGNLEPVTAAHIMPIRSFIGATAPLDAYPDII PGKEAVADSRFVVRYFRKTVDNRLLFGGREAYTADTPRDISSHIRRQIAEIYPELGNV EITHSWGGSVGITLPRRVFVREVMPGVTSIGGYSGHGVMLSNYCGKLYADLVLGRQDM LAPFARLKVPSFPGGASLRAPLLFLALSWYALRDRF" misc_feature complement(549917..551038) /gene="ordL" /locus_tag="AGROH133_04045" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" misc_feature complement(549854..550996) /gene="ordL" /locus_tag="AGROH133_04045" /note="Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:31009" gene complement(551091..552527) /gene="glnA" /locus_tag="AGROH133_04046" /db_xref="GeneID:10266307" CDS complement(551091..552527) /gene="glnA" /locus_tag="AGROH133_04046" /EC_number="6.3.1.2" /note="Glutamine synthetase/guanido kinase, catalytic region, GlnA: glutamine synthetase, type I" /codon_start=1 /transl_table=11 /product="Glutamine synthetase" /protein_id="YP_004277855.1" /db_xref="GI:325291991" /db_xref="GeneID:10266307" /translation="MPPKKTMLRPKKQATMAKKPPLDLSSTRGVSSWREASQWLRARG IEDIECITPDLAGVARGKMMPTAKFTGDTSLALPSALYRHTISGEYPDETANFRYEPR DSDLKLVPDLSTLSVVPWESDPTAQVICDVVDAEGNFVPYTPRNVLKNVLSLYTEKGW KPVVAPEIEFYLVAMNDDPDYPLHPPKGRSGRSIVGGQSYSIAGINEFDELIDDIYHF SEKQGLEIDTLIHEEGPAQLEINLRHGDPIELADQVFLFKRTIREAALKHGIYATFMA KPMQGQPGSAMHIHQSVVEIDSGRNIFSNKDGGPSKEFFAFVGGMQRYVPNALVMLAP YVNSYRRLTPDMACPVNNAWGYDNRTTAFRVPISSPQARRVENRLPSSDANPYLALAA SLACGWLGIVNNIEPTEPTADTANEGSIDLPRGLLEAVALLEGEEQFERVFGHEFVGL YAGLKRGEFETFMQVISPWEREFLLLNV" misc_feature complement(551097..552437) /gene="glnA" /locus_tag="AGROH133_04046" /note="Glutamine synthetase [Amino acid transport and metabolism]; Region: GlnA; COG0174" /db_xref="CDD:30523" misc_feature complement(552126..>552221) /gene="glnA" /locus_tag="AGROH133_04046" /note="Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951" /db_xref="CDD:146534" misc_feature complement(551337..552107) /gene="glnA" /locus_tag="AGROH133_04046" /note="Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120" /db_xref="CDD:189401" gene 552657..553838 /locus_tag="AGROH133_04047" /db_xref="GeneID:10266308" CDS 552657..553838 /locus_tag="AGROH133_04047" /note="Predicted flavoproteins" /codon_start=1 /transl_table=11 /product="oxidoreductase protein" /protein_id="YP_004277856.1" /db_xref="GI:325291992" /db_xref="GeneID:10266308" /translation="MADKCDVLILGAGAAGMMCAIRAGQRGRSVIILDHAKAPGEKIR ISGGGRCNFTNIHAGPKNYLSANPHFAKSALARYTPRDFIALVEKHRIAWHEKTLGQL FCDDSAKDIIRMLLGEMQAAKVKLRLETAVSDVAHDGGRFRVTTSGGVIEAESLVVAT GGKSIPKMGATGFAYQIAEQFGLSLIETRPGLVPLTLDPAALERLSPLAGVAVPAEIS HGKTAFNEALLFTHRGLSGPSILQISSYWREGDTIRLKLEPARDIVALLKEAKQKNGR QSAQTALAEILPKRLAQHVVEKSGLTGNLADMSDKALATLANEVQDWQIKPAGSEGYR TAEVTLGGVDTTGLDSRSMAAKTVAGLYFIGECVDVTGWLGGYNFQWAWASGQAAGEF A" misc_feature 552666..553835 /locus_tag="AGROH133_04047" /note="Predicted flavoproteins [General function prediction only]; Region: COG2081" /db_xref="CDD:32264" misc_feature 552669..553826 /locus_tag="AGROH133_04047" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene complement(553949..554296) /locus_tag="AGROH133_04049" /db_xref="GeneID:10266309" CDS complement(553949..554296) /locus_tag="AGROH133_04049" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277857.1" /db_xref="GI:325291993" /db_xref="GeneID:10266309" /translation="MHVFYSALAIIENQTPRTRREAIRQEEKFYADMAEASWPWRLFI AIAARAKAKSLTLVKKGDQGSHGTGCDCSQAKGQLPAPAFGAGDGNGARAAMCGSVHA RAPDEKLNRPMPC" gene 554380..555252 /locus_tag="AGROH133_04050" /db_xref="GeneID:10266310" CDS 554380..555252 /locus_tag="AGROH133_04050" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004277858.1" /db_xref="GI:325291994" /db_xref="GeneID:10266310" /translation="MKNVTWDSYQLFLDVSRSGGLTGAAALTGLSPATIGRRMIELEE RIGKALFQRSQTGYALTPDGRALFDRLQAMENAAKDIEGWQKASSASSVVRIAVGTWN AWLLAVNFSAICTDRDDFRIDLFIAEQRASLAHRENDIGIRAFEPEERNLAAIKTGEV AYAPYRLRNAAASVADRWLAVAEENAISAYLRWPHENRRDNIVVTVNRPTALLDLALA GAGVAVLPCFVGDADARLMREGDEIEALRHNQWIVMNNDDRHRRDIRTVADRMTRLIK RHSDLYAGRKSRPA" misc_feature 554482..555219 /locus_tag="AGROH133_04050" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature <554482..554574 /locus_tag="AGROH133_04050" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(555259..555516) /locus_tag="AGROH133_04051" /db_xref="GeneID:10266311" CDS complement(555259..555516) /locus_tag="AGROH133_04051" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277859.1" /db_xref="GI:325291995" /db_xref="GeneID:10266311" /translation="MNAHNPIKTHVKERAEEQSSAMTQDQQVAIRMLANDLHRLNQAV MKAVEAGVSVELVRSARHHGGGGNWGDLLIPVIVAQGSAAA" gene complement(555600..556889) /gene="aceA" /locus_tag="AGROH133_04052" /db_xref="GeneID:10266312" CDS complement(555600..556889) /gene="aceA" /locus_tag="AGROH133_04052" /EC_number="4.1.3.1" /note="Isocitrate lyase and phosphorylmutase" /codon_start=1 /transl_table=11 /product="Isocitrate lyase" /protein_id="YP_004277860.1" /db_xref="GI:325291996" /db_xref="GeneID:10266312" /translation="MTDFYKLVPGAPQGRFDGIERTYTAADVERLRGSVEIRHSLAEM GANRLWKLINEENFINALGALSGNQAMQMVRAGLKAIYLSGWQVAADANTASAMYPDQ SLYPANAAPELAKRINRTLQRADQIETAEGKGLSVDTWFAPIVADAEAGFGGPLNAFE IMKAFIEAGAAGVHYEDQLASEKKCGHLGGKVLIPTAAHIRNLTAARLAADVMGVPTL VIARTDAEAAKLLTSDIDERDQPFVDYDAGRTVEGFYQVKNGLEPCIARAVAYAPYCD LIWCETSKPDLEQARRFAEGVHKVHPGKKLAYNCSPSFNWKKHLDDATIAKFQRELGA MGYKFQFITLAGFHQLNYGMFELARGYKERQMAAYSELQEAEFAAEVNGYTATKHQRE VGTGYFDAVSLAISGGTSSTTAMKESTEHDQFRPAAE" misc_feature complement(555726..556772) /gene="aceA" /locus_tag="AGROH133_04052" /note="PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]; Region: PrpB; COG2513" /db_xref="CDD:32583" misc_feature complement(555810..556745) /gene="aceA" /locus_tag="AGROH133_04052" /note="Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377" /db_xref="CDD:119340" misc_feature complement(order(555813..555821,555825..555833, 555837..555845,556266..556268,556275..556280, 556287..556289,556296..556301,556389..556391, 556398..556400,556410..556415,556431..556433, 556530..556535,556542..556547,556551..556556, 556563..556568,556572..556583,556590..556595, 556602..556604,556620..556622,556632..556634, 556653..556661,556665..556667,556674..556679, 556683..556697,556701..556712,556716..556718, 556737..556739)) /gene="aceA" /locus_tag="AGROH133_04052" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:119340" misc_feature complement(order(555861..555863,555957..555959, 555963..555965,556047..556049,556224..556226, 556362..556364,556443..556445,556449..556451, 556587..556589,556632..556640,556644..556646)) /gene="aceA" /locus_tag="AGROH133_04052" /note="active site" /db_xref="CDD:119340" misc_feature complement(order(556362..556364,556443..556445, 556449..556451,556587..556589)) /gene="aceA" /locus_tag="AGROH133_04052" /note="Mg2+/Mn2+ binding site [ion binding]; other site" /db_xref="CDD:119340" gene 557144..558559 /locus_tag="AGROH133_04053" /db_xref="GeneID:10266313" CDS 557144..558559 /locus_tag="AGROH133_04053" /note="Protein of unknown function DUF955; Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="HTH XRE family transcriptional regulator" /protein_id="YP_004277861.1" /db_xref="GI:325291997" /db_xref="GeneID:10266313" /translation="MSENKIFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQ RPLTVQLLLKLASVYKVDLDDLQGESAGSAGQLREVFADPLLVGEVPSPQELIEVADA APNAASGVVKLYRAYREQAQRLSDLSDLLAREGHETALSSTRLPIDEVRHVFENRPAY VHSIDAAAEELYKQLSAGEDLAAGLRAWLQKNHGIVVRTLPVHAMPNLRRRYDRHSMR LFLSERLSQPDQLREMAMETCLLALRDEIGAELETLGLKGEEARRIARFELARYAAHA LMMPYGAFLSASQRAKYDLDVLRSRFNVSFEQAANRLVSLQRPTAAAIPFFLMETDNA GNRFRLAGAGGFPRARFGGLCPRLNIHAAFAQPGQVLVEPVEMPDGDAFLTVSRTLEG PQAGFGERVRRTAVLLGCDLAQAGETVYGAAGAGGPTIAIGPSCRLCERQGCLSRAEA PLTRPLGLDEMVTGLSVFDFQ" misc_feature 557168..557491 /locus_tag="AGROH133_04053" /note="Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396" /db_xref="CDD:31586" misc_feature 557168..557341 /locus_tag="AGROH133_04053" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature order(557180..557182,557192..557194,557267..557269) /locus_tag="AGROH133_04053" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature order(557189..557191,557264..557266) /locus_tag="AGROH133_04053" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature order(557210..557215,557246..557248,557255..557257, 557267..557272) /locus_tag="AGROH133_04053" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature 557570..558556 /locus_tag="AGROH133_04053" /note="Predicted transcriptional regulator [General function prediction only]; Region: COG3800" /db_xref="CDD:33594" misc_feature 557714..558082 /locus_tag="AGROH133_04053" /note="Domain of unknown function (DUF955); Region: DUF955; cl01076" /db_xref="CDD:154183" misc_feature 558086..558547 /locus_tag="AGROH133_04053" /note="Predicted transcriptional regulator (DUF2083); Region: DUF2083; pfam09856" /db_xref="CDD:150518" gene 558711..559808 /gene="potF" /locus_tag="AGROH133_04055" /db_xref="GeneID:10266314" CDS 558711..559808 /gene="potF" /locus_tag="AGROH133_04055" /note="Bacterial extracellular solute-binding protein, family 1; Spermidine/putrescine-binding periplasmic protein" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter substrate-binding protein" /protein_id="YP_004277862.1" /db_xref="GI:325291998" /db_xref="GeneID:10266314" /translation="MKNRSLRFTLALTTALVAAGSAMAQEKVVHVFNWSDYIDESILT DFTKETGIKVVYDVFDSNELVETKLLAGSSGYDVVVPTGPFLARQINAGVFQKLDKSK LPNLKNMWPDVSERLAKYDPGNEYAVNYMWGTTGIGYNVAKVKAALGDVPVDSWDILF KPENAEKLKSCGINILDASDETFAIAMNYLGKNPDSKETADLEAGGAVYSKIRPFVKT FNSSAYIDELANGDSCITIGWSGDILQAKKRAEEAKNGVEVNYVIPKEGTYMWFDNLA IPADAKNVEEAHTFINYLMRPEVIAKASNYVQYANGNLASQALMDPSVAKNPAVYPNA ETMKKLFTISPYGPKEQRVLNRVWTQIKTGS" misc_feature 558768..559802 /gene="potF" /locus_tag="AGROH133_04055" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature 558771..559802 /gene="potF" /locus_tag="AGROH133_04055" /note="Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]; Region: PotD; COG0687" /db_xref="CDD:31031" gene 559988..561145 /gene="potG" /locus_tag="AGROH133_04057" /db_xref="GeneID:10266315" CDS 559988..561145 /gene="potG" /locus_tag="AGROH133_04057" /note="Spermidine/putrescine ABC transporter ATP-binding subunit; ABC-type spermidine/putrescine transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter ATP-binding protein" /protein_id="YP_004277863.1" /db_xref="GI:325291999" /db_xref="GeneID:10266315" /translation="MAKTLGPVKRKFSPWDNPDAVPFIRFENVTKRFGDFVAVDNLTL DIYEREFFSLLGPSGCGKTTLMRMLAGFEEPTNGRILLQGKDISGVPPYKRPTNMMFQ SYALFPHMSVEKNIAFGLEQDGLPKAEISSRVEEMLRLVKLSEFAKRKPSQLSGGQRQ RVALARSLAKRPKVLLLDEPLGALDKKLREETQFELMDIQTNLGLTFLIVTHDQEEAM TVSDRIAVMDKGIVVQVATPAEIYEAPNSRYVADFIGDINIFDANVVTNASDIGKPGL VTLDCDGLTVAVEQECAAVTGSRVAFAIRPEKVRISLDQPTDSAVNSAYGEVWDIGYL GDFSVFIVKLADGRVIRAAQANVSRLVDRPITFGDMVWLNWKQDSGLVLTH" misc_feature 560045..561139 /gene="potG" /locus_tag="AGROH133_04057" /note="putrescine transporter ATP-binding subunit; Provisional; Region: potG; PRK11607" /db_xref="CDD:183226" misc_feature 560057..560752 /gene="potG" /locus_tag="AGROH133_04057" /note="PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues...; Region: ABC_PotA_N; cd03300" /db_xref="CDD:73059" misc_feature 560153..560176 /gene="potG" /locus_tag="AGROH133_04057" /note="Walker A/P-loop; other site" /db_xref="CDD:73059" misc_feature order(560162..560167,560171..560179,560291..560293, 560519..560524,560621..560623) /gene="potG" /locus_tag="AGROH133_04057" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73059" misc_feature 560282..560293 /gene="potG" /locus_tag="AGROH133_04057" /note="Q-loop/lid; other site" /db_xref="CDD:73059" misc_feature 560447..560476 /gene="potG" /locus_tag="AGROH133_04057" /note="ABC transporter signature motif; other site" /db_xref="CDD:73059" misc_feature 560507..560524 /gene="potG" /locus_tag="AGROH133_04057" /note="Walker B; other site" /db_xref="CDD:73059" misc_feature 560531..560542 /gene="potG" /locus_tag="AGROH133_04057" /note="D-loop; other site" /db_xref="CDD:73059" misc_feature 560609..560629 /gene="potG" /locus_tag="AGROH133_04057" /note="H-loop/switch region; other site" /db_xref="CDD:73059" misc_feature 560894..561136 /gene="potG" /locus_tag="AGROH133_04057" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene 561157..562065 /gene="potH" /locus_tag="AGROH133_04058" /db_xref="GeneID:10266316" CDS 561157..562065 /gene="potH" /locus_tag="AGROH133_04058" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type spermidine/putrescine transport system, permease component I" /codon_start=1 /transl_table=11 /product="putrescine ABC transport system permease protein PotH" /protein_id="YP_004277864.1" /db_xref="GI:325292000" /db_xref="GeneID:10266316" /translation="MAITTPENRQSPWRWLVVAVPYFWLMLFFAAPFFIIFKISLSDT AISMPPYTPVFEGFSKLGAFFSQLDFENYLFLTEDPLYIDAYLSSLRIAFISTFLLLL IGYPMALAMARSPSSIRPTLVMLVILPFWTSFLIRVYAWIGILKPEGLLTVLFQWLGF LGPDQQVNIFRTETAIFIGIVYSYLPFMVLPLYSALEKFDNTLLEAAADLGCPPWKAF WKITFPLSLPGVVAGSMICFIPITGEFVIPDLLGGAQTLMIGKTLWTEFFGNRDWPLA SAVAVLLLLLLVVPIAIFQNQQKKVG" misc_feature 561421..561960 /gene="potH" /locus_tag="AGROH133_04058" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(561460..561465,561472..561477,561490..561492, 561520..561531,561535..561564,561571..561576, 561580..561582,561700..561705,561709..561711, 561715..561717,561724..561729,561733..561735, 561745..561750,561757..561759,561808..561810, 561850..561855,561862..561864,561883..561894, 561901..561906,561943..561948) /gene="potH" /locus_tag="AGROH133_04058" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(561538..561582,561883..561900) /gene="potH" /locus_tag="AGROH133_04058" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(561580..561582,561685..561687,561901..561903, 561937..561939,561946..561948) /gene="potH" /locus_tag="AGROH133_04058" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(561760..561798,561814..561819,561829..561831) /gene="potH" /locus_tag="AGROH133_04058" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 562070..562882 /gene="potI" /locus_tag="AGROH133_04065" /db_xref="GeneID:10266317" CDS 562070..562882 /gene="potI" /locus_tag="AGROH133_04065" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type spermidine/putrescine transport system, permease component II" /codon_start=1 /transl_table=11 /product="Spermidine/putrescine transport system permease protein" /protein_id="YP_004277865.1" /db_xref="GI:325292001" /db_xref="GeneID:10266317" /translation="MKRGKFDITVLTLGFAFLYIPIIILIVYSFNASKLVTVWGGFSL QWYKSMWSNQGLMDAAWVTLRVGILSATIGTILGTLAALSLTRFARFPGRVLFSGMIY APLVMPEVITGLSLLLLFVAVGVDRGFWTVVIAHTTFTMCYVAIVVQSRLLTFDRSLE EAALDLGCPPVKTFFKITLPLIFPAVIAGWMLAFTLSLDDLVIASFATGPGATTLPIK IYSQVRLGVTPEINAICTILIGLVTIGVIVASIASKRTELQRMKDEHAAARN" misc_feature 562247..562774 /gene="potI" /locus_tag="AGROH133_04065" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(562295..562300,562307..562312,562325..562327, 562358..562369,562373..562402,562409..562414, 562418..562420,562481..562486,562490..562492, 562496..562498,562505..562510,562514..562516, 562526..562531,562538..562540,562589..562591, 562631..562636,562643..562645,562664..562675, 562682..562687,562724..562729,562757..562762, 562769..562774) /gene="potI" /locus_tag="AGROH133_04065" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(562376..562420,562664..562681) /gene="potI" /locus_tag="AGROH133_04065" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(562418..562420,562466..562468,562682..562684, 562718..562720,562727..562729,562757..562759) /gene="potI" /locus_tag="AGROH133_04065" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(562541..562579,562595..562600,562610..562612) /gene="potI" /locus_tag="AGROH133_04065" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(563194..564852) /locus_tag="AGROH133_04072" /db_xref="GeneID:10266318" CDS complement(563194..564852) /locus_tag="AGROH133_04072" /note="Iron(III)-transport system permease protein fbpB 2; ABC-type Fe3+ transport system, permease component" /codon_start=1 /transl_table=11 /product="iron III permease protein" /protein_id="YP_004277866.1" /db_xref="GI:325292002" /db_xref="GeneID:10266318" /translation="MTVSIPATRRVSLLPITAVIVAAIAAMPVLAVFWLALTGSTEGW QHLLANVLPRAGFRTFLLLAMTAATTALFGIVCAWLVTTFEFPLRRVLSAALVLPLAI PSYLAAYAFGEFLDFTGPVQSALRAVFGYHSIRDYWFPDVRSLGGAVVVLSSVLYPYV YLSARAAFSMQGRFAAEAARTLGAKPLGVFFSVQLPMARPAIAIGLSLVLMETLNDIG AVEYLGVQTLTFTIYETWLNRGNLANATQIAAVILLIVGALIFIERNAREKQRFAAPK ATTIAQRHRLKSLRGWRRWSASLFCIVPVASGFLIPVIVLGGYAAKRLDALFAPKLLK ALGHSLEVSLSAAFVTLIAAFVFSYAIRTERSRTSKVAARLGSMGYGVPGTVLAIGVL IPLAGLDNHVDGFVRSHFGFSSGLLLSGTAFAIIYAHSVRFMTMAEGTLDAGFQKLSP HIDMASRTLGRNRLQTLFKVLLPNMRPAALTAFLLVLIESMKELPATILLRPFGFNTL ATLVYEDASRSRVQDAAVPAIIIIIAGLIPVLLVSKSMDHPENR" misc_feature complement(564067..564633) /locus_tag="AGROH133_04072" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(564067..564072,564079..564084, 564091..564096,564100..564105,564112..564117, 564145..564150,564187..564192,564199..564210, 564229..564231,564238..564243,564283..564285, 564334..564336,564343..564348,564358..564360, 564364..564369,564376..564378,564436..564438, 564442..564444,564454..564456,564535..564564, 564568..564579,564607..564609,564622..564627)) /locus_tag="AGROH133_04072" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(564193..564210,564529..564561)) /locus_tag="AGROH133_04072" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(564115..564117,564145..564147, 564154..564156,564190..564192,564469..564471)) /locus_tag="AGROH133_04072" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(564262..564264,564274..564279, 564295..564333)) /locus_tag="AGROH133_04072" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" misc_feature complement(<563884..564111) /locus_tag="AGROH133_04072" /note="Domain of unknown function (DUF1980); Region: DUF1980; cl01492" /db_xref="CDD:189150" misc_feature complement(563296..563847) /locus_tag="AGROH133_04072" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(563314..563319,563356..563361, 563368..563379,563398..563400,563407..563412, 563452..563454,563503..563505,563512..563517, 563527..563529,563533..563535,563545..563547, 563554..563556,563560..563562,563566..563571, 563677..563679,563683..563688,563695..563724, 563728..563739,563767..563769,563782..563787, 563794..563799)) /locus_tag="AGROH133_04072" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(563362..563379,563677..563721)) /locus_tag="AGROH133_04072" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(563314..563316,563323..563325, 563359..563361,563584..563586,563677..563679)) /locus_tag="AGROH133_04072" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(563431..563433,563443..563448, 563464..563502)) /locus_tag="AGROH133_04072" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(564938..568684) /gene="pleC" /locus_tag="AGROH133_04086" /db_xref="GeneID:10266319" CDS complement(564938..568684) /gene="pleC" /locus_tag="AGROH133_04086" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; FOG: PAS/PAC domain" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004277867.1" /db_xref="GI:325292003" /db_xref="GeneID:10266319" /translation="MPAVQYPFIDIAVHERVREGFGRGEAMALFSLDLQSALWANGRG AALFGTPMVYDFLEQGPKRQDVTFRQLAATAARLSKTGDSLPFTIRINAGFRSLAVTA KAEIIEAEPGQPAILFSALTDQAAPDTAECARRMIEGFDDPDIHIAVINGDNEVVAAS AKFASLGITPHTAKTLVRMAAGQAGHLVKRPVPTGKGYMPAAAGQITISPELNLLFVV ETALGTLDPVNGFAEDKPQETPAAAQPALPVAETAPVAATAASFDSMLDAVAGIEDVE DVPELPSDVEDEVTVEQDEEAVLPLLAAEEETDAPADVPLEDADTAANAAMTDDIADL FELDADEAEVPATGQASSEDHTEQAPDVERAEAEDEVAETIAAQDAAPVEEDLPAAVE PTDEPQPFVFNAGARASRFVWKIDAEGRFSSISHEFAEAVGAKAAAVEGMSFADVAAL FNLDPEGKIRELLGRRDTWSGKTIYWPVEGTSLMVPIDLAALPTYTRSREFDGFRGFG IVRLADAAEDPHATGLTFLHGEDILQTEVLPQPAAADEDEELLAFLDELDEEIPAAED APAEISDEERPHDYSPPEFEVPALAIVPTPEPEPEPTYSDKVVHLEERRWRSREGLTA GEQAAFREIGRTLAPLDAVSDEGPKAEEDAPSTDPAAQHIQDDIDAVTQVDLPPVLEE DVNAAEPAEEDDLFADYVRGERPAATNKPADEIQIEEKTVAFNEVVPAADIAAAMVSP PLRPADALSAETLDQMPVALLVHAGDRLIHANPDFLRLTGYGSLDELDEVGGLEALLQ RQELEDMPDNEGGMVVVSAENDIIPVKARLQSIRWEDTKALMLSLVPLEEKQAPVTAA NENTSAAETANADAGSVSVLQGEVEELHSILETATDGVVLLGDDGEIRSLNRSASALF NYDNGEIAGKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGREVIGREASGGFLPL FMTIGRLKSSHGYCVVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTP LNAIIGFADMMATERFGPIGHPRYVEYSNDIGRSGRHVLDIVNDLLDISKIEAGQMDV DFIAVPLNETVAEAVSLVQPQANNQRVIIRTALSQSVPQIVADLRSIKQIVLNILSNA IRFTPSGGQIVVSTAYEANGSVALRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGD GTGLGLPLTKAMVDANRANFSITSTPNEGTLVEITFPSQRVLAN" misc_feature complement(564983..566059) /gene="pleC" /locus_tag="AGROH133_04086" /note="phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966" /db_xref="CDD:163090" misc_feature complement(565859..566044) /gene="pleC" /locus_tag="AGROH133_04086" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(565445..565648) /gene="pleC" /locus_tag="AGROH133_04086" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(565460..565462,565472..565474, 565481..565483,565493..565495,565502..565504, 565514..565516,565574..565576,565583..565585, 565595..565597,565604..565606,565616..565618, 565628..565630)) /gene="pleC" /locus_tag="AGROH133_04086" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(565610..565612) /gene="pleC" /locus_tag="AGROH133_04086" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(564965..565282) /gene="pleC" /locus_tag="AGROH133_04086" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(564977..564979,564983..564988, 565001..565003,565007..565009,565055..565066, 565148..565153,565157..565159,565163..565165, 565169..565171,565241..565243,565250..565252, 565262..565264)) /gene="pleC" /locus_tag="AGROH133_04086" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(565250..565252) /gene="pleC" /locus_tag="AGROH133_04086" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(565058..565060,565064..565066, 565151..565153,565157..565159)) /gene="pleC" /locus_tag="AGROH133_04086" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 569046..569122 /locus_tag="AGROH133_04087" /db_xref="GeneID:10266320" tRNA 569046..569122 /locus_tag="AGROH133_04087" /product="tRNA-His" /anticodon=(pos:569080..569082,aa:His) /db_xref="GeneID:10266320" gene 569193..570920 /gene="ppx" /locus_tag="AGROH133_04088" /db_xref="GeneID:10266321" CDS 569193..570920 /gene="ppx" /locus_tag="AGROH133_04088" /EC_number="3.6.1.11" /note="Ppx/GppA phosphatase family" /codon_start=1 /transl_table=11 /product="Exopolyphosphatase" /protein_id="YP_004277868.1" /db_xref="GI:325292004" /db_xref="GeneID:10266321" /translation="MSLLRVDGAVSSLPKTIWLKSLALVLSAQRNLMKASSIASTLVR GEMDKTVIDPGNGPKPSEQGASVANKGKAKRSRRGKKNRRDGKPRDVAVLSHDVAADV PAGSPYVSALEPDAEPRKRKRRRRSRGKGTSHQTPPAASEQPEAVVATDATNPSSVPP AGGRKSRNRKRAHRDPRSRDPQGRPLVPSHAPRHVGKQNGRANGTAQEPHRQQSEMSA RHGARHQEHGSEFATDMYAALDLGTNNCRLLIAQPTRPGQFRVVDAFSRIVRLGEGLV STGRLSDDAMDRAVEALKVCSSKLAGRPIRRMRLIATEACRAATNGEEFLERVTRETG LKLEIISRETEARLAVSGCASLVGREARSVVLFDIGGGSSEIAVIKVGENRSNRLANH ITHWTSLPVGVVTLSERHGGRDVTPDVFAAMVREVEGLLDAFQCPPLAPLAHHEDFHL IGTSGTVTTLAGVHLDLPRYDRRKVDGLWLSDTEVTAMQDKLLAWDFAGRAANACIGP DRADLVLAGCAILEAIRRRWPARRMRVADRGLREGLLTDMMADDGAWRRNRIRRMQMA RQDRTEGLT" misc_feature 569898..570842 /gene="ppx" /locus_tag="AGROH133_04088" /note="exopolyphosphatase; Region: exo_poly_only; TIGR03706" /db_xref="CDD:188376" misc_feature 569955..570839 /gene="ppx" /locus_tag="AGROH133_04088" /note="Ppx/GppA phosphatase family; Region: Ppx-GppA; pfam02541" /db_xref="CDD:145597" gene 570917..571657 /gene="ftsJ" /locus_tag="AGROH133_04089" /db_xref="GeneID:10266322" CDS 570917..571657 /gene="ftsJ" /locus_tag="AGROH133_04089" /EC_number="2.1.1.-" /note="23S rRNA methylase" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="YP_004277869.1" /db_xref="GI:325292005" /db_xref="GeneID:10266322" /translation="MSKAPTSTNRTGRKIGQKVKKTKLKASSRRWLERHINDPYVQRA KLEGYRARAAFKLLEINDKHQILKGATRIIDLGAAPGSWSQIASKVTDSTEDDIRVAA IDFLEIDPIPGVKILQLDFLDPTAPDQLMEAVGGTPDLVLSDMAAPTTGHQKTDHIRT MHLCEVAADFAVQVLAEGGHFLAKTFQGGTEKALLDMLKKNFKQVLHIKPASSRSESV EMFLLAKHFKGRTAETQSVMHVDEADED" misc_feature 570989..571606 /gene="ftsJ" /locus_tag="AGROH133_04089" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(571658..573085) /locus_tag="AGROH133_04090" /db_xref="GeneID:10266323" CDS complement(571658..573085) /locus_tag="AGROH133_04090" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004277870.1" /db_xref="GI:325292006" /db_xref="GeneID:10266323" /translation="MSQRRAAGSLMNRIIPLILAVALFMEQMDSTVIATSLPAIAADL HVGPITLKLALTAYMVSLAIFIPISGWMADKYGAKKIFRFAIGVFVVGSICCAVSSSV FEFVVSRFLQGMGGAMMTPVGRLVLLRTTQRSELVSAMALLTIPALVGPLTGPPIGGF ITTYFSWHWIFLINVPIGVIGIWLSTIFLPEIETTNPPPMDGKGFVLSGLAASGVVFG VSVVSLPALPPAIGIASTVIGFICGFLYVRHAANHPAPILDFRIFRNPTFRAATVGGT AFRISTGAIPFLMPLMLQIGFGLNPFQSGMITFAGAIGAITTKFMAKRVFAATGFRST LIGAGIVGAFTTLANSFFTPETPYPLIMICLVTAGFARSFFFTGSNALSYSDIDDSQA SQATSMASVLQQISLALGVAFAAAILEVSSMLSGSHLQLADFHVAFTIVALVSLFAIV PIIRMDAQAGAAVSGHRGKVSQPAE" misc_feature complement(<572516..573037) /locus_tag="AGROH133_04090" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(571733..573034) /locus_tag="AGROH133_04090" /note="putative transporter; Provisional; Region: PRK10504" /db_xref="CDD:182502" misc_feature complement(order(572633..572635,572651..572656, 572663..572668,572702..572704,572711..572716, 572723..572728,572735..572740,572876..572881, 572885..572890,572900..572902,572909..572914, 572921..572923,572972..572977,572981..572989, 572996..572998)) /locus_tag="AGROH133_04090" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 573054..574250 /locus_tag="AGROH133_04105" /db_xref="GeneID:10266324" CDS 573054..574250 /locus_tag="AGROH133_04105" /note="Zn-dependent hydrolases, including glyoxylases" /codon_start=1 /transl_table=11 /product="metallo-beta-lactamase superfamily protein" /protein_id="YP_004277871.1" /db_xref="GI:325292007" /db_xref="GeneID:10266324" /translation="MRLPAALRCDNGIAVPPTPDGPTCQHVNYQFLKFRSNLREAGFL ATFSLYCPLGKVTLARIGRKMMTQSLSMSRRGLIGVAGASVLGAPLLMARTATAQTNQ PQTSMEIKHAMPPETNRFKLGNFEVLVVKDGARAAPNPGETFGTDQSAETVGKLLEDN FLPKEQFVNSFSPVLVNTGTDLVLFDTGFGESGRGAGNGRLIEGMAAAGYSPDDVTVV VLTHMHGDHIGGLMEKGAPAFSKARYVFGQAEYDFWTDEKRVGTSAEGGQKGVIANVK PLAEKATFIGDGADVVSGITGIAAFGHSPGHMIFRVESEGKQLILTADTANHFVLSLQ KPDWEVKFDMDKAAAAATRKKVYDMIATDRLPFLGYHMPFPAVGYAEKLDTGYRFVPK SYQFDI" misc_feature 573573..>574028 /locus_tag="AGROH133_04105" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 574426..574584 /locus_tag="AGROH133_04106" /db_xref="GeneID:10266325" CDS 574426..574584 /locus_tag="AGROH133_04106" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277872.1" /db_xref="GI:325292008" /db_xref="GeneID:10266325" /translation="MNVLPALANFQAILAGRRGELFVPGRPRIFIMKEFGHGTHHSNT HWFGRSHI" gene 574535..576040 /gene="guaB" /locus_tag="AGROH133_04107" /db_xref="GeneID:10266326" CDS 574535..576040 /gene="guaB" /locus_tag="AGROH133_04107" /EC_number="1.1.1.205" /note="catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; IMP dehydrogenase/GMP reductase" /codon_start=1 /transl_table=11 /product="inositol-5-monophosphate dehydrogenase" /protein_id="YP_004277873.1" /db_xref="GI:325292009" /db_xref="GeneID:10266326" /translation="MARIIQTPTGLDALTFDDVLLQPGHSEVMPGQTNIATRIARDID LNLPILSSAMDTVTEGRLAIAMAQAGGIGVIHRNLTPIEQAEEVRQVKKFESGMVVNP VTIGPDATLAEAQALMKAHGISGIPVVENGGAGGHKNGRLVGILTNRDVRFASDPQQK IYELMTRENLVTVKESSVDQQEARRLLHKHRIEKLLVVDGKGNCVGLITVKDMEKSQL NPNATKDAQGRLRAAAAISVGADAIERAERLIDAGVDLLVVDTAHGHSQRVLDAVSVV KKMSNSVRIIAGNVATADGTKALIDAGADGIKVGIGPGSICTTRIVAGVGVPQLAAIM ASVEVANAADIPVIADGGIKFSGDLAKAIAAGASAVMIGSLLAGTDESPGEVFLYQGR SFKAYRGMGSVGAMARGSADRYFQAEVRDTLKLVPEGIEGQVPYKGPVSGVLHQLAGG LKAAMGYVGGGTIKEFQERATFVRISSAGLRESHAHDVTITRESPNYPGAV" misc_feature 574535..576031 /gene="guaB" /locus_tag="AGROH133_04107" /note="inosine 5'-monophosphate dehydrogenase; Reviewed; Region: PRK05567" /db_xref="CDD:180134" misc_feature 574571..>574894 /gene="guaB" /locus_tag="AGROH133_04107" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature 574829..575182 /gene="guaB" /locus_tag="AGROH133_04107" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key...; Region: CBS_pair_IMPDH; cd04601" /db_xref="CDD:73101" misc_feature <575201..575959 /gene="guaB" /locus_tag="AGROH133_04107" /note="IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the...; Region: IMPDH; cd00381" /db_xref="CDD:73364" misc_feature order(575477..575485,575582..575584,575588..575590, 575651..575656,575723..575725,575729..575737, 575816..575821) /gene="guaB" /locus_tag="AGROH133_04107" /note="active site" /db_xref="CDD:73364" gene 576137..576556 /locus_tag="AGROH133_04108" /db_xref="GeneID:10266327" CDS 576137..576556 /locus_tag="AGROH133_04108" /note="Protein of unknown function DUF1123; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277874.1" /db_xref="GI:325292010" /db_xref="GeneID:10266327" /translation="MSPTTAMFWPMIAHAFLVFVLYALLLYRRKKYTLTDRDTALRYR DTGQEGRESYLVNRNIANQFELPVLFHPVCLLLYITDADNIVTVVLAWLFVISRYAHS FVHVTSNRLRYRAPLFAIGFALLVCLWGWLAIWLALE" misc_feature 576149..576553 /locus_tag="AGROH133_04108" /note="MAPEG family; Region: MAPEG; cl09190" /db_xref="CDD:195815" gene 576706..577734 /gene="adhP" /locus_tag="AGROH133_04112" /db_xref="GeneID:10266328" CDS 576706..577734 /gene="adhP" /locus_tag="AGROH133_04112" /EC_number="1.1.1.1" /note="Alcohol dehydrogenase superfamily, zinc-containing; Zn-dependent alcohol dehydrogenases" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase, zinc-containing" /protein_id="YP_004277875.1" /db_xref="GI:325292011" /db_xref="GeneID:10266328" /translation="MAKTMKAAVVRAFGKPLTIEEVAIPDPGPGEILINYKATGICHT DLHAATGDWPVKPNPPFIPGHEGVGYVAKIGAGVTGIKEGDRAGTPWLYTACGCCIPC RTGWETLCPSQKNSGYSVNGSFAEYGLADPKFVGRLPDNLEFGPAAPVLCAGVTVYKG LKETEVRPGEWVVISGIGGLGHMAVQYAKAMGMHVVAADIYDDKLELAKKLGADFTVN GRAPDAVEQVQKATGGVHGALVTAVSPKAMEQAYGFLRSKGTMALVGLPPGFISIPVF ETVLKRITVRGSIVGTRQDLEEALSFAGEGKVAAHFSWDKLENINDIFRRMEEGKIDG RIVVDLAA" misc_feature 576712..577731 /gene="adhP" /locus_tag="AGROH133_04112" /note="Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064" /db_xref="CDD:31264" misc_feature 576718..577725 /gene="adhP" /locus_tag="AGROH133_04112" /note="Cinnamyl alcohol dehydrogenases (CAD); Region: CAD3; cd08297" /db_xref="CDD:176257" misc_feature order(576829..576837,576844..576846,577159..577161, 577171..577173,577231..577233,577237..577242, 577243..577245,577297..577302,577315..577317, 577426..577437,577444..577446,577495..577503, 577567..577575,577708..577710) /gene="adhP" /locus_tag="AGROH133_04112" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:176257" misc_feature order(576829..576831,576835..576837,576862..576864, 576898..576900,576976..576978,577159..577161, 577501..577503,577573..577575) /gene="adhP" /locus_tag="AGROH133_04112" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176257" misc_feature order(576829..576831,576898..576900,577159..577161) /gene="adhP" /locus_tag="AGROH133_04112" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176257" misc_feature order(576862..576864,576997..576999,577003..577008, 577030..577038,577204..577212,577273..577281, 577285..577287,577321..577323,577330..577335, 577447..577449,577471..577473,577477..577479, 577492..577494,577498..577503,577528..577533, 577546..577572,577582..577587,577597..577599, 577609..577611,577618..577620) /gene="adhP" /locus_tag="AGROH133_04112" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176257" misc_feature order(576991..576993,577000..577002,577009..577011, 577033..577035) /gene="adhP" /locus_tag="AGROH133_04112" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176257" gene 577845..578723 /gene="dlhH" /locus_tag="AGROH133_04113" /db_xref="GeneID:10266329" CDS 577845..578723 /gene="dlhH" /locus_tag="AGROH133_04113" /EC_number="3.1.1.45" /note="Dienelactone hydrolase and related enzymes" /codon_start=1 /transl_table=11 /product="carboxymethylenebutenolidase" /protein_id="YP_004277876.1" /db_xref="GI:325292012" /db_xref="GeneID:10266329" /translation="MDDKPKITQAMIDAYDEYTHLSLDRRKFMEKLSLLAGSGAAAAA IAPLLSANSARAAIVAPDDAGIVAEEVTYPAPGGEMKGYLVTPKSVSGPIGSVIVIHE NRGLNDHIRDVARRVALAGFRALAVDFLSPQGGTPSDEDKAREMFSGLDMDATVANAE AGRVWLAARQGANGKVGAVGFCWGGGLVNRFATKSAGLNAGVAYYGQQPPAADVPAIK APLLLQYAGLDERINAGIDAYKKALEQNGKTFEIFVYDGVNHAFNNDTSSARYDKAAA DLTWGRTTEFFKKYLA" misc_feature 578043..578720 /gene="dlhH" /locus_tag="AGROH133_04113" /note="Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412" /db_xref="CDD:30761" gene complement(578768..579313) /gene="moaB" /locus_tag="AGROH133_04114" /db_xref="GeneID:10266330" CDS complement(578768..579313) /gene="moaB" /locus_tag="AGROH133_04114" /note="molybdopterin binding domain; Molybdopterin biosynthesis enzymes" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein B" /protein_id="YP_004277877.1" /db_xref="GI:325292013" /db_xref="GeneID:10266330" /translation="MAGERPFIPLGIAVLTVSDSRTLENDKSGDTLVARIEEAGHKVA ARTIVADDKAAIFNTVRDWTLNGSVDVVITTGGTGFTGRDVTPEALEPLFEKRMDGFS AIFHRISYEKIGTATIQSRATGGVANATFIFVLPGSPGACKDAWDGILKAQLDYRHLP CNFVEIMPRLDEHLKRGAGGV" misc_feature complement(578858..579286) /gene="moaB" /locus_tag="AGROH133_04114" /note="MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea...; Region: MogA_MoaB; cd00886" /db_xref="CDD:58167" misc_feature complement(order(578882..578884,578891..578893, 578903..578908,578987..578989,579077..579085)) /gene="moaB" /locus_tag="AGROH133_04114" /note="MPT binding site; other site" /db_xref="CDD:58167" misc_feature complement(order(578951..578953,578960..578962, 578993..578998,579005..579007,579020..579028, 579050..579052,579062..579064,579068..579073, 579077..579079)) /gene="moaB" /locus_tag="AGROH133_04114" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:58167" gene complement(579340..580224) /gene="ipk" /locus_tag="AGROH133_04115" /db_xref="GeneID:10266331" CDS complement(579340..580224) /gene="ipk" /locus_tag="AGROH133_04115" /EC_number="2.7.1.148" /note="4-diphosphocytidyl-2C-methyl-D-erythritol 2- phosphate synthase" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2-C-methyl-D- erythritolkinase" /protein_id="YP_004277878.1" /db_xref="GI:325292014" /db_xref="GeneID:10266331" /translation="MRADDITGAVETTEAAPAKINLALHVTGQRADGYHLLETLVTFT EAGDAIHVRDADADTFSISGPFGDLLRAGDGGNNLVVRARDLLRDALVAAGQSARPVA IHLEKNLPVASGIGGGSADAAATLRALLRHWNARIVPENLAPIALALGADVPMCLESR PLIARGIGEDIELVSDLPEFFLVLANPLKAVSTPEIFRRLLDKANPPLPERKEDGWMD FLAQSRNDLEVPAKALLPEIGAIAGMLSQEGASLVRMSGSGATCFGLFHSFEAARKAE TSLRNKRPGWYFQATRTI" misc_feature complement(579343..580206) /gene="ipk" /locus_tag="AGROH133_04115" /note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: PRK14608" /db_xref="CDD:184764" misc_feature complement(579379..579576) /gene="ipk" /locus_tag="AGROH133_04115" /note="GHMP kinases C terminal; Region: GHMP_kinases_C; pfam08544" /db_xref="CDD:192062" gene complement(580231..582075) /locus_tag="AGROH133_04116" /db_xref="GeneID:10266332" CDS complement(580231..582075) /locus_tag="AGROH133_04116" /note="Tetratricopeptide region; FOG: TPR repeat" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277879.1" /db_xref="GI:325292015" /db_xref="GeneID:10266332" /translation="MRRKPALRLLCSAALAAALALGAGASPGFAETKTEAKAVTFDPA KVNTFSGAFLAARNADVDQDYPTAISLYKKALEFDPANSEIRQRLMIAELLSGNFEAG AKIADSMKDDTSVERVTTIVRGLDAIKDKEFVKAEKILKYTGPNDLDRMVNTLLTAWA RAGSGKPKEALALVNNMKGPGWISIFQKYNAAAIALVSGNTDAARKSLNEAVTDREGG ATASDTYMRAVMALARLEASAGNKQKALDAIAVGDTFAPNYAPLKALRQSIEKGEKPP QQITNAVEGAASVMFSIAGALNREGAEEIVTLYLQTSRALDPQSADTLILLGGLAEAM KQPDRAIAFYRDVPKDSPMHRISELQLGLTLAQTGKVEEARNHLQSLLQSDPKDIRSY LAYGSVLSDAKDYKAMAENYDKAVEVIGAVPQKSDWTVFFQRAIAHERLKEWDKAEPD FKRALELNPEQPQVLNYLGYSWVDKGINLDEAMKMISRAVELRPNDGYIVDSLGWAHF RLGAFDQAVTELERAIELKAGDQTINDHLGDAYWRVGRKIEAVYQWNRALIGDNDDLD KAKVKEKIANGLPPLEKDAENTAKKEAAPQPPAPPAPAPVAPAPDKKS" misc_feature complement(580426..>581952) /locus_tag="AGROH133_04116" /note="putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917" /db_xref="CDD:188258" misc_feature complement(580822..581106) /locus_tag="AGROH133_04116" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(580870..580875,580882..580887, 580894..580899,580975..580980,580987..580992, 580996..581001,581086..581091,581098..581103)) /locus_tag="AGROH133_04116" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(580831..580833,580840..580842, 580852..580854,580888..580890,580933..580935, 580942..580944,580954..580956,580990..580992, 581035..581037,581044..581046,581056..581058, 581092..581094)) /locus_tag="AGROH133_04116" /note="TPR motif; other site" /db_xref="CDD:29151" misc_feature complement(580495..580788) /locus_tag="AGROH133_04116" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cd00189" /db_xref="CDD:29151" misc_feature complement(order(580546..580551,580558..580563, 580570..580575,580654..580659,580666..580671, 580675..580680,580765..580770,580777..580782, 580786..580788)) /locus_tag="AGROH133_04116" /note="binding surface" /db_xref="CDD:29151" misc_feature complement(order(580507..580509,580516..580518, 580528..580530,580564..580566,580609..580611, 580618..580620,580630..580632,580669..580671, 580714..580716,580723..580725,580735..580737, 580771..580773)) /locus_tag="AGROH133_04116" /note="TPR motif; other site" /db_xref="CDD:29151" gene complement(582267..583283) /gene="ispB" /locus_tag="AGROH133_04119" /db_xref="GeneID:10266333" CDS complement(582267..583283) /gene="ispB" /locus_tag="AGROH133_04119" /EC_number="2.5.1.-" /note="Terpenoid synthase, Polyprenyl synthetase; Geranylgeranyl pyrophosphate synthase" /codon_start=1 /transl_table=11 /product="octaprenyl-diphosphate synthase" /protein_id="YP_004277880.1" /db_xref="GI:325292016" /db_xref="GeneID:10266333" /translation="MGVVIPLEESKNKLASVKPLVDLTRADMERVNQLILSRAGSDVQ MIPEVANHLISSGGKRLRPMLTLASASMFGYEGDHHIKLATSVEFMHTATLLHDDVVD ESDLRRGKSTARTIWGNQASVLVGDFLLGQAFRMMVDVGSLDALDVLSTAASVIAEGE VLQLSVAKNMETTEDDYLQVIRAKTAALFAAAAEVGPIVAKTDKASRSALKSYGMNLG LAFQLVDDVLDYGGKSADLGKNTGDDFREGKITLPVILSYRRGTQDERAFWRNAIENG ESSDENLEKALGLIAKYNGLGDTIGRATHYGTIARDALAPLPESPWKNALLEVIDFCI ERLN" misc_feature complement(582273..583226) /gene="ispB" /locus_tag="AGROH133_04119" /note="octaprenyl diphosphate synthase; Provisional; Region: PRK10888" /db_xref="CDD:182813" misc_feature complement(582276..583163) /gene="ispB" /locus_tag="AGROH133_04119" /note="Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685" /db_xref="CDD:173833" misc_feature complement(order(582537..582539,582552..582554, 582567..582569,582597..582599,582606..582611, 582720..582722,582729..582734,582795..582797, 582804..582806,582960..582965,582978..582983, 582987..582995,582999..583007,583014..583016)) /gene="ispB" /locus_tag="AGROH133_04119" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature complement(582978..583007) /gene="ispB" /locus_tag="AGROH133_04119" /note="chain length determination region; other site" /db_xref="CDD:173833" misc_feature complement(order(582537..582539,582552..582554, 582567..582569,582597..582599,582606..582611, 582732..582734,582795..582797,582960..582965, 582978..582980,582987..582992)) /gene="ispB" /locus_tag="AGROH133_04119" /note="substrate-Mg2+ binding site; other site" /db_xref="CDD:173833" misc_feature complement(order(582606..582611,582732..582734, 582960..582965,582978..582980,582987..582992)) /gene="ispB" /locus_tag="AGROH133_04119" /note="catalytic residues [active]" /db_xref="CDD:173833" misc_feature complement(order(582732..582734,582795..582797, 582960..582965,582978..582980,582987..582992)) /gene="ispB" /locus_tag="AGROH133_04119" /note="aspartate-rich region 1; other site" /db_xref="CDD:173833" misc_feature complement(order(582531..582545,582552..582569, 582585..582590,582930..582974)) /gene="ispB" /locus_tag="AGROH133_04119" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature complement(order(582537..582539,582552..582554, 582567..582569,582597..582599,582606..582611)) /gene="ispB" /locus_tag="AGROH133_04119" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene 583395..583625 /locus_tag="AGROH133_04120" /db_xref="GeneID:10266334" CDS 583395..583625 /locus_tag="AGROH133_04120" /note="Protein of unknown function (DUF2007)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277881.1" /db_xref="GI:325292017" /db_xref="GeneID:10266334" /translation="MRELIRTNDAVLLSFAESLMKDAGIHCLVADQAMSILEGSLGLL PRRFLVEEDRAGEARRILVDAGLGDELRNEEA" misc_feature 583398..583601 /locus_tag="AGROH133_04120" /note="Protein of unknown function (DUF2007); Region: DUF2007; pfam09413" /db_xref="CDD:150174" gene 583632..584432 /locus_tag="AGROH133_04121" /db_xref="GeneID:10266335" CDS 583632..584432 /locus_tag="AGROH133_04121" /EC_number="2.1.1.-" /note="methyltransferase small; Predicted O-methyltransferase" /codon_start=1 /transl_table=11 /product="methyltransferase protein" /protein_id="YP_004277882.1" /db_xref="GI:325292018" /db_xref="GeneID:10266335" /translation="MGGEISETLDAFHRGRFHILQPKGRGHRAGMDAMLLASMVADER ACRIADLGAGAGAAGFAVATRLEKAEVTLFERSPEMVEFACRSLALPENAAFSARVSV READVTLRGKARVEAGLPDGHFHHVIMNPPYNDAGDRRTPDALRAEAHAMTEGLFEDW IRTAGAITVPGGQLSLIARPQSVAEIIAACGSRFGGIEITLIHPRPGEDAVRMLVTAI KGSRARLSFRAPLVMHETGSHAFTPIVDDLNNGRTAYRRNVKAIGPGL" misc_feature 583632..584396 /locus_tag="AGROH133_04121" /note="Predicted O-methyltransferase [General function prediction only]; Region: COG4123" /db_xref="CDD:33880" misc_feature <583824..584165 /locus_tag="AGROH133_04121" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 584523..585389 /gene="sohB" /locus_tag="AGROH133_04122" /db_xref="GeneID:10266336" CDS 584523..585389 /gene="sohB" /locus_tag="AGROH133_04122" /note="Peptidase family S49; Periplasmic serine proteases (ClpP class)" /codon_start=1 /transl_table=11 /product="protease SohB" /protein_id="YP_004277883.1" /db_xref="GI:325292019" /db_xref="GeneID:10266336" /translation="MGFLKYLVPKRFRKKELVIPVVRMHGAIMAGGNQFRPALNLASY APLLEKAFAVKDAPAVAISVNSPGGSPVQARMIYNRIRQLAEEKDKKVLIFVEDVAAS GGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPEMLKKIGVERRVYTAGENKVILDPF QPEKEGDIEYLKSLQVEIHNVFIDMVKMRRGAKLKGDETVFSGLFWTGMRGLDLGLID GLGDMREVLRRRYGTKVKLQLVTGGRSLFGKKVPGVNAALGLNAERLAAGAVSGLAEV AEEKALWSRFGL" misc_feature 584577..585146 /gene="sohB" /locus_tag="AGROH133_04122" /note="Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023" /db_xref="CDD:132934" misc_feature order(584595..584597,584709..584711,584826..584828, 584871..584873,584877..584879,584901..584912, 585057..585059,585129..585137,585141..585143) /gene="sohB" /locus_tag="AGROH133_04122" /note="tandem repeat interface [polypeptide binding]; other site" /db_xref="CDD:132934" misc_feature order(584646..584648,584667..584669,584745..584747, 584946..584948,584952..584966,585051..585053, 585063..585065) /gene="sohB" /locus_tag="AGROH133_04122" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132934" misc_feature 584826..584828 /gene="sohB" /locus_tag="AGROH133_04122" /note="active site residues [active]" /db_xref="CDD:132934" gene 585410..585604 /locus_tag="AGROH133_04123" /db_xref="GeneID:10266337" CDS 585410..585604 /locus_tag="AGROH133_04123" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277884.1" /db_xref="GI:325292020" /db_xref="GeneID:10266337" /translation="MAQLITIVLLVVGSVILYRRFVRDAEKLSAKSKQREKERETGAI GTLIKDPETGEYRVKREDET" misc_feature <585413..>585601 /locus_tag="AGROH133_04123" /note="NfeD-like C-terminal, partner-binding; Region: NfeD; cl00686" /db_xref="CDD:120037" gene 585705..586667 /gene="glyQ" /locus_tag="AGROH133_04125" /db_xref="GeneID:10266338" CDS 585705..586667 /gene="glyQ" /locus_tag="AGROH133_04125" /EC_number="6.1.1.14" /note="glycine-tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase, subunit alpha" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase alpha chain" /protein_id="YP_004277885.1" /db_xref="GI:325292021" /db_xref="GeneID:10266338" /translation="MTAMTDIPDHMNPKRSFQALILTLHNYWADKGCAVLQPYDMEVG AGTFHPATTLRALGPKPWKAAYVQPSRRPSDGRYGENPNRLQHYYQYQVILKPNPSNL QELYLGSLKAIGLDPLLHDVRFVEDDWESPTLGAWGLGWECWCDGMEVSQFTYFQQVC GIECSPVAGELTYGLERLAMYVQGVDNVYDLNFNGREGEEKISYGDVFLQAEQEYSRH NFEFADTGMLHRHFIDAEKECLALLAAGAPGDDDNQRLHKCVFPAYDQCIKASHVFNL LDARGVISVTERQSYILRVRTLAKACGEAFLLTDAGGLNWNRAA" misc_feature 585747..586625 /gene="glyQ" /locus_tag="AGROH133_04125" /note="glycyl-tRNA synthetase, tetrameric type, alpha subunit; Region: glyQ; TIGR00388" /db_xref="CDD:129483" misc_feature 585750..586625 /gene="glyQ" /locus_tag="AGROH133_04125" /note="Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733" /db_xref="CDD:29812" misc_feature order(585756..585758,585768..585770,585780..585782, 585804..585809,585813..585815,585819..585830, 585876..585878,585903..585905,585915..585917, 585963..585965,586281..586283,586335..586337, 586344..586349,586368..586370,586374..586376, 586383..586385,586392..586397,586404..586409, 586416..586418,586425..586427,586437..586439, 586479..586490,586497..586499,586509..586511) /gene="glyQ" /locus_tag="AGROH133_04125" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29812" misc_feature 585801..585824 /gene="glyQ" /locus_tag="AGROH133_04125" /note="motif 1; other site" /db_xref="CDD:29812" misc_feature order(585837..585839,585843..585845,585918..585920, 585966..585968,585972..585974,585978..585986, 586149..586154,586164..586166,586212..586217, 586221..586226,586230..586235) /gene="glyQ" /locus_tag="AGROH133_04125" /note="active site" /db_xref="CDD:29812" misc_feature 585915..585926 /gene="glyQ" /locus_tag="AGROH133_04125" /note="motif 2; other site" /db_xref="CDD:29812" misc_feature 586224..586235 /gene="glyQ" /locus_tag="AGROH133_04125" /note="motif 3; other site" /db_xref="CDD:29812" gene 586746..587297 /locus_tag="AGROH133_04126" /db_xref="GeneID:10266339" CDS 586746..587297 /locus_tag="AGROH133_04126" /note="LemA family; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277886.1" /db_xref="GI:325292022" /db_xref="GeneID:10266339" /translation="MFITLVIVAAIALYVVFIYNGLVKARQMKEEAWSGIDVQLKRRA DLIPNLIETVKGYAAHEKSTFEEVIAMRNRAQAVPAGDVEGRAQAEGMLSQALGKLFA LAEAYPDLKANTNFLELQRSLETIEGELQMSRRYYNGAARDLNVRVESFPSNLIAGQF GFAKAPYFEIDNPADRAVPTVKF" misc_feature 586803..587288 /locus_tag="AGROH133_04126" /note="LemA family; Region: LemA; cl00742" /db_xref="CDD:120079" gene 587382..588659 /gene="aroA" /locus_tag="AGROH133_04128" /db_xref="GeneID:10266340" CDS 587382..588659 /gene="aroA" /locus_tag="AGROH133_04128" /EC_number="2.5.1.19" /note="RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta; 5-enolpyruvylshikimate-3-phosphate synthase" /codon_start=1 /transl_table=11 /product="3-phosphoshikimate 1-carboxyvinyltransferase" /protein_id="YP_004277887.1" /db_xref="GI:325292023" /db_xref="GeneID:10266340" /translation="MIELTITPPGHPLSGKVEPPGSKSITNRALLLAGLAKGKSRLTG ALKSDDTLYMAEALRAMGVKVTEPDATTFVVDGTGVLQQPEKPLFLGNAGTATRFLTA AAALVDGAVIIDGDEHMRKRPIMPLVEALRALGVEADAPTGCPPVTVRGKGMGFPKGS VTIDANLSSQYVSALLMAAACGDKPVDIILKGEEIGAKGYIDLTTSAMEAFGAKVERV SNAIWRVHPTGYTATDFHIEPDASAATYLWGAELLTAGAIDIGTPADKFTQPDAKAYE VMAQFPHLPAEIDGSQMQDAIPTIAVLAAFNETPVRFVGIANLRVKECDRIRAVSLGL NEIRNGLAHEEGDDLIVHADPALAGQTVDASIDTFADHRIAMSFALAALKIGGIAIQN PACVGKTYPGYWKALASLGVDYNEKESAAELQH" misc_feature 587382..588620 /gene="aroA" /locus_tag="AGROH133_04128" /note="3-phosphoshikimate 1-carboxyvinyltransferase; Provisional; Region: PRK02427" /db_xref="CDD:179423" misc_feature 587418..588611 /gene="aroA" /locus_tag="AGROH133_04128" /note="EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-...; Region: EPSP_synthase; cd01556" /db_xref="CDD:30129" misc_feature order(587436..587447,588090..588101) /gene="aroA" /locus_tag="AGROH133_04128" /note="hinge; other site" /db_xref="CDD:30129" misc_feature order(587448..587453,587463..587465,587655..587657, 587661..587666,587745..587747,587883..587891, 587970..587972,587979..587981,588264..588266, 588333..588335,588345..588350,588357..588359, 588495..588500,588573..588575) /gene="aroA" /locus_tag="AGROH133_04128" /note="active site" /db_xref="CDD:30129" gene 588683..590620 /locus_tag="AGROH133_04129" /db_xref="GeneID:10266341" CDS 588683..590620 /locus_tag="AGROH133_04129" /note="Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277888.1" /db_xref="GI:325292024" /db_xref="GeneID:10266341" /translation="MKTIAARLLALLVFLGAACPAFAEEFIRSYHSVVEVAKSGELTV TETITVRAEGQNIKRGIFRDFPLYALDANNRRTKVDFNVVSVERDGAPENWRTENIDG GIRIYTGSADRFLPTGEHIFQITYTTARQIRYFSDYDELTWNVTGNGWQFPMGEISAT ITLPQGVKATGTAVFTGPLGAKGKDARILSEGNEVFFASTRPFSVGEGMTVAVKLPKG AIAAPDSSQEAGWWLRDNLAILLSGGGLFAVLLYYLRAWFAVGRDPAKGVVLPRWDAP EGLSPALVNYVDNRGFSGAGWTALSASALDLAVKGYVVLEDLKNSIVIRRTQKQAGAE LPSGQKTLLSSIGGPGETLTIDKAHGTEVEKVGKQFRAAIEKEHRGKYYRSNAGYIVF GIFFSVAIIVATLVFGDLDESAIAAVLVFGCFAFFFSILSIGIGRQFSRGASLSKRIG GIVMLAFAGFVAFSVIGGIATQILLDVTHDTKSLALAAIGGIVLTNALFLFLMGAPTP LGRKLMDGIEGLRTYLTLAEKDRMNMADAPAISPQHFETLLPYAVALGVEKPWSRTFE TWLATAAAGAAAASYAPGWYLGSNYGSFGDRIGGFSTSMANTIASTIPQPVSSSSSSF SGGGGGGSSGSGGGGGGGGGW" misc_feature 588752..589876 /locus_tag="AGROH133_04129" /note="Predicted membrane protein (DUF2207); Region: DUF2207; pfam09972" /db_xref="CDD:150626" misc_feature <590162..590380 /locus_tag="AGROH133_04129" /note="Predicted membrane protein (DUF2207); Region: DUF2207; pfam09972" /db_xref="CDD:150626" gene 590719..592872 /gene="glyS" /locus_tag="AGROH133_04136" /db_xref="GeneID:10266342" CDS 590719..592872 /gene="glyS" /locus_tag="AGROH133_04136" /EC_number="6.1.1.14" /note="glycine-tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase, beta subunit" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase beta chain" /protein_id="YP_004277889.1" /db_xref="GI:325292025" /db_xref="GeneID:10266342" /translation="MPDLLLELRSEEIPARMQRKAAGDLKKLVTDALVERGLTYEGAR EYWTPRRLTLDIRGLNARSADVREEKKGPRTDANEKAIEGFLRGAGLNDVSEAQVVSD PKKGDFYIAIINKPGRPAEEIIAEVMPGIIRSFPWPKSMRSGPASMPKGSSYAGIEGK GSESLRWVRPLQSIVCLFGPEHDETQVIPFVIDGIVAGNVTYGHRFHAPGPITVRRFE DYVSSLEKAKVILDADRRKDIILHDAKDLAFANGLELVEDEGLLEEVSGLVEWPQVLM GTFEEDYLQIPAEIIRLTIKTNQKCFVTRNQGAEEGLSNRFILISNIEASDGGKEIIH GNGKVVRARLSDARHFWNRDQGDLPDLETLKDSAAKFGLDLKKPLDQRMAKLDALNVT FHAKLGTQGERVARIRELAKALAAVVGADAALVDRAVVLAKADLRTEAVGEFPELQGL MGRKYATLQGENESVAAAIEDHYKPQGPSDRLPADKVAITVALADKLDTLVGFWAIDE KPTGSKDPFALRRAALGVVRILLEKNVRLPLLSVAKDTDLLSFFHDRLKVYLRDLGAR YDLIDAVLTPESDDLLMIARRVEALTAFITGEDGRNLLAGAKRATQLLAAEEKKGTVV ANSVSEELLKLDAEKALYAAIKTASADAAKAVETEDFRSAMQALSTLRAPVDKFFEDV LVNDEDAAIRANRLALLKAIREATGTVADFSKITG" misc_feature 590719..592869 /gene="glyS" /locus_tag="AGROH133_04136" /note="glycyl-tRNA synthetase subunit beta; Validated; Region: glyS; PRK01233" /db_xref="CDD:179258" misc_feature 590728..592440 /gene="glyS" /locus_tag="AGROH133_04136" /note="Glycyl-tRNA synthetase beta subunit; Region: tRNA_synt_2f; pfam02092" /db_xref="CDD:190207" misc_feature <592726..592827 /gene="glyS" /locus_tag="AGROH133_04136" /note="Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020" /db_xref="CDD:196302" gene 593101..593595 /locus_tag="AGROH133_04137" /db_xref="GeneID:10266343" CDS 593101..593595 /locus_tag="AGROH133_04137" /note="Protein of unknown function DUF523; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277890.1" /db_xref="GI:325292026" /db_xref="GeneID:10266343" /translation="MTHTPRKILISACLLGQPVRYDGKGKPLVHPAIDRWRDEGRLVA ICPEMAGGMSVPRPPAEIENSASGLDVLEGHARVLEVTGGDVTAEFIAGAEKALALAK ANGCTHALLIDGSPSCGSVAIYDGSFSGIKHAGNGVTAALLERAGITVFSPVDIDRLD TLTR" misc_feature 593110..593586 /locus_tag="AGROH133_04137" /note="Protein of unknown function (DUF523); Region: DUF523; cl00733" /db_xref="CDD:153961" gene complement(593654..595477) /gene="mcpA3" /locus_tag="AGROH133_04138" /db_xref="GeneID:10266344" CDS complement(593654..595477) /gene="mcpA3" /locus_tag="AGROH133_04138" /note="methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein A" /protein_id="YP_004277891.1" /db_xref="GI:325292027" /db_xref="GeneID:10266344" /translation="MKNLSISRQLIVLVVALMAAFAAATFYQLKSATDAIYEERYGML RTQVQSAISILQSFHDKEKAGTLSHEDAMKQAFATVSAMRFTPDGYLFGYDYDVTMKF HPDAKRVGENYKGKPDSKGFQYRDELVRLGRNGGGQTDFYGPKPGMEGNDYAKSSYAL AFEPWQVVVVTGVYIDDLNAQVRGEVMRALSIGAAIFVLALAAAFYVIRGISKPLGDI HRALGEVANENVSLTIPHTGLTNEVGMMAKATASLQDKVRERHAMQRREEEQQQQLNA ERQNNLDMQRDEAALQARVVTTIGEALEKLAGGDLTVRCADLGNRYAALRDNFNEALT HLDAAMAKVNSKSIDIGGSKEEIRKASNELSQRTERQAANLEETSAALDELTVAVRQT AEGAADAAKRVTTVSSEAMRSDRVVEEAIAAMSGIEQSSDQISNIIGVIDDIAFQTNL LALNAGVEAARAGEAGKGFAVVAQEVRELAQKSAAAAKEIKDQIARSSNQVENGVRLV GEAGDALKRISDQIKSANEIVGKIAHSAAEQDTTLRSISTSLNQLDVATQHNAAMAEE TTASAEALAVDTEELLNLIRGFRVSSSHQLHGMAEQMRMAG" misc_feature complement(595112..595375) /gene="mcpA3" /locus_tag="AGROH133_04138" /note="Cache domain; Region: Cache_2; pfam08269" /db_xref="CDD:149365" misc_feature complement(593711..594415) /gene="mcpA3" /locus_tag="AGROH133_04138" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature complement(593708..594292) /gene="mcpA3" /locus_tag="AGROH133_04138" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(595805..596317) /locus_tag="AGROH133_04143" /db_xref="GeneID:10266345" CDS complement(595805..596317) /locus_tag="AGROH133_04143" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277892.1" /db_xref="GI:325292028" /db_xref="GeneID:10266345" /translation="MRRLLLTAVVALTGGSAMASSIEYVNGTHTSNGSFVRLDCARCQ PVKDNPAPEGFAIPSIEPGTQHTEMREIEGKRTLVRTEAWLGGAPVTFVSTNPAWMPQ ETPGTAIATYDEGEAGTPPQETAATPAGIDMTATTAATKTISAANATAPSSASAMAAP DFQDFKLRGN" gene complement(596475..597746) /gene="purD" /locus_tag="AGROH133_04145" /db_xref="GeneID:10266346" CDS complement(596475..597746) /gene="purD" /locus_tag="AGROH133_04145" /EC_number="6.3.4.13" /note="catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; Phosphoribosylamine-glycine ligase" /codon_start=1 /transl_table=11 /product="phosphoribosylamine-glycine ligase" /protein_id="YP_004277893.1" /db_xref="GI:325292029" /db_xref="GeneID:10266346" /translation="MKVLLIGSGGREHALAWKIAQSPLLDELYAAPGNPGIADHATVV SLDVEDHAAVIAFAREKAIDFVVVGPEAPLVAGLADDLRAADIATFGPSKAAAQLEGS KGFTKDLCARYDIPTGAYQRFKTAEPAKQYVREQGAPIVIKADGLAAGKGVTVAMSEA EALAAIDDCFDGAFGAAGAEVVVEAFLDGEEASFFCLSDGKTALALATAQDHKRVGDG DTGPNTGGMGAYSPAPVMTPAMVERTMKEIIEPTISGMAKDGNPFSGVFFAGLMITAK GPELIEYNVRFGDPECQVLMMRLKSDLLPILYATATGTLDKVKAEWRDDAALTVVLAS KGYPGAYDKNTPIAHIPDASEEAKVFHAGTALKDGRLVATGGRVLNVTAFGKNVTEAQ ARAYALAAKVEWENGFCRRDIGWQAVAREKV" misc_feature complement(596487..597746) /gene="purD" /locus_tag="AGROH133_04145" /note="phosphoribosylamine--glycine ligase; Provisional; Region: PRK00885" /db_xref="CDD:179154" misc_feature complement(597447..597743) /gene="purD" /locus_tag="AGROH133_04145" /note="Phosphoribosylglycinamide synthetase, N domain; Region: GARS_N; pfam02844" /db_xref="CDD:190449" misc_feature complement(596871..597446) /gene="purD" /locus_tag="AGROH133_04145" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(596496..596771) /gene="purD" /locus_tag="AGROH133_04145" /note="Phosphoribosylglycinamide synthetase, C domain; Region: GARS_C; pfam02843" /db_xref="CDD:190448" gene 597834..600272 /gene="tex" /locus_tag="AGROH133_04146" /db_xref="GeneID:10266347" CDS 597834..600272 /gene="tex" /locus_tag="AGROH133_04146" /note="Tex-like protein N-terminal domain" /codon_start=1 /transl_table=11 /product="Transcriptional accessory protein" /protein_id="YP_004277894.1" /db_xref="GI:325292030" /db_xref="GeneID:10266347" /translation="MPVFPSNSAFPVESLPPLVVTPQSDIMFAAPDVTSENPMTADNA RLATLIASEINARADQVKAAVALLDEGATVPFIARYRKEATGGLDDTQLRTLAERLVY LRELNARRASIVDTINSQGKMTDALMVKIMQAGTKAELEDLYLPYKPKRRTRAEIARE RGLGPLAEAIWANRAADPAKLGEAYVQGEVADVKAALEGARDIVAETMTENADLLGRL RDYMRQNAIFRAKVVDGKQAAGEKFSDYFDHFERWATVPGHRALAMLRGWNEEILTLT IDVDADDPSPVKPAQRTVAAAFDIRNAGPADQWLMEVAGWTWRVKLSMSLSLDLMREL RERAEEEAINVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLLDTTTV YPFQPRNDVRGAQAELAMLIRKHNVELIAIGNGTGSRETEKLVADLLTQMPASASGAK PTKVIVSEAGASVYSASERAAAEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKSIGV GQYQHDVDQGRLSRSLDAVVEDAVNAVGVDLNTASSPLLARVSGLGASIADAIVAHRD QTGPFASRKELLKVPRLGQRTFEQCAGFLRIPNGKEPLDSSSVHPEAYGVAKKIVAAC GRDLRTLMGDSATLKGLDPKRFIDEQFGLPTVKDIIAELEKPGRDPRPSFKTATFADG VDEITDLKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGD VVKVRVVEVDVKRKRIALTMRKDGGEAAPQPMREKGNAGAMRHANSKPQGHNEGSQSG GALAAALAEAMKRR" misc_feature 597942..600269 /gene="tex" /locus_tag="AGROH133_04146" /note="Transcriptional accessory protein [Transcription]; Region: Tex; COG2183" /db_xref="CDD:32366" misc_feature 597981..598553 /gene="tex" /locus_tag="AGROH133_04146" /note="Tex-like protein N-terminal domain; Region: Tex_N; pfam09371" /db_xref="CDD:150144" misc_feature 598917..599228 /gene="tex" /locus_tag="AGROH133_04146" /note="Uncharacterised protein family (UPF0081); Region: UPF0081; cl00525" /db_xref="CDD:186059" misc_feature 599907..>600032 /gene="tex" /locus_tag="AGROH133_04146" /note="S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin...; Region: S1_Tex; cd05685" /db_xref="CDD:88440" misc_feature order(599931..599933,599955..599957,599985..599987, 599991..599993) /gene="tex" /locus_tag="AGROH133_04146" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88440" gene 600440..601696 /gene="cfa" /locus_tag="AGROH133_04147" /db_xref="GeneID:10266348" CDS 600440..601696 /gene="cfa" /locus_tag="AGROH133_04147" /EC_number="2.1.1.79" /note="Cyclopropane fatty acid synthase and related methyltransferases" /codon_start=1 /transl_table=11 /product="cyclopropane-fatty-acyl-phospholipid synthase" /protein_id="YP_004277895.1" /db_xref="GI:325292031" /db_xref="GeneID:10266348" /translation="MASSLHVLLEKIIKNGNLVVNSPGGSRTFGNGTGTRVVLNFTDE AAMQEIAADPALKLAEIYMEGRMQVVEGDIYDFLALVKSNTLSEALSFGMVWRGMARI IAARIRMHLPVNHNKSNVAHHYDLSAKLFDIFLDEDWQYSCAYFNPPGISLYEAQVAK KRHIAAKLMTEPGQSVLEIGSGWGGMAMYIAESAGADVTGITLSEEQLRVSRDRAAKR GLAGNVRFELQDYRYLPASKKFDRIVSVGMFEHVGPTHYRDYFDKVAEVLDDKGVMVL HSIGQPSPALATNPFIEKYIFPGGYIPSLAEVLPAIQKSGLLVKDIEILPMHYAHTLR HWRERFVARKAEAVALYDERFFRMWEFYLAGSEMAFTHENFHIFQIQLAKDRDAVPHN RDYIARNEEKLLEFEKTRPPLEKVMF" misc_feature 600764..601591 /gene="cfa" /locus_tag="AGROH133_04147" /note="Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]; Region: Cfa; COG2230" /db_xref="CDD:32411" misc_feature 600965..601270 /gene="cfa" /locus_tag="AGROH133_04147" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(600974..600994,601043..601048,601124..601132, 601175..601177) /gene="cfa" /locus_tag="AGROH133_04147" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 601931..602731 /locus_tag="AGROH133_04148" /db_xref="GeneID:10266349" CDS 601931..602731 /locus_tag="AGROH133_04148" /note="MltA-interacting protein MipA; Outer membrane protein V" /codon_start=1 /transl_table=11 /product="outer membrane protein" /protein_id="YP_004277896.1" /db_xref="GI:325292032" /db_xref="GeneID:10266349" /translation="MFKPSAAVAACVLSLFAVGNAHADGWFSGDWYLKLGGSGFSAPK YQGDNKNEFGFSPIISLGRQGQGARFTSRNDSASISLLDNGPISMGLAGKLVSPRDQK DSADLKGMTRIKRGGELGGFAEAYPTDWLRIRGEARQGIRSHSGVVADLSADVFTDIA PGIQISAGPRATWVSSKYNERYYGVSAAQTAAGAPSPYSPGGGLHSAGVGAAITWKVT EAAEVGSFAEYRRLTGDAADSSLVRERGSKNQFVVGVQASYKFGFTLP" misc_feature 601931..602713 /locus_tag="AGROH133_04148" /note="MltA-interacting protein MipA; Region: MipA; cl01504" /db_xref="CDD:154438" gene 602852..603805 /gene="ubiA" /locus_tag="AGROH133_04150" /db_xref="GeneID:10266350" CDS 602852..603805 /gene="ubiA" /locus_tag="AGROH133_04150" /EC_number="2.5.1.-" /note="UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases" /codon_start=1 /transl_table=11 /product="4-hydroxybenzoate octaprenyltransferase" /protein_id="YP_004277897.1" /db_xref="GI:325292033" /db_xref="GeneID:10266350" /translation="MVHHSDLSDRVSDAPSNNWVYRILPRPLWPYAQLARWDRPIGWQ LLMWPCFWSAALAANAAVASGGFSWGTLIWHLSLFFIGSVAMRGAGCTYNDLADHKID MAVARTRSRPLPSGRVSRAQAKVFIVLQALAGLVVLLQFNGFAIATGIFSLVFVAIYP FAKRFTNWPQFFLGLAFSWGALMGWAGQFGSIAWPAVLLYVGSIAWTIGYDTIYAHQD KEDDTAVGIGSTALLFGDNTHRWLVFLYGTALVMIALSFWGAGVNLIAYSGLAAAAIM LFRQVWVLDIDDVAQCLVLFKSNNRVGVLIFAGLILPLLLA" misc_feature 602852..603760 /gene="ubiA" /locus_tag="AGROH133_04150" /note="UbiA prenyltransferase family; Region: UbiA; cl00337" /db_xref="CDD:193776" gene complement(603884..604450) /locus_tag="AGROH133_04159" /db_xref="GeneID:10266351" CDS complement(603884..604450) /locus_tag="AGROH133_04159" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277898.1" /db_xref="GI:325292034" /db_xref="GeneID:10266351" /translation="MTKTVLKPDWAVATLRLDPARFPQQVTYGRGNGATDVAVTLDER GAVLRKVLSSSGLPLSFALPARAFKGVAARAIDHGDGQVTVTLELHHDDPELCVPLLV AHDLCDIAADWRSWSEAYRIPMLMVEADGVARPLEEHLGKVRTKNSRPRRRHSYFADR RPRFLVRRSTGSLGMSMKIEGKEIIARS" gene 604817..607255 /locus_tag="AGROH133_04160" /db_xref="GeneID:10266352" CDS 604817..607255 /locus_tag="AGROH133_04160" /note="Protein of unknown function DUF1217" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277899.1" /db_xref="GI:325292035" /db_xref="GeneID:10266352" /translation="MVSTFLSYDLINRDMKASISRVSQQGIVERQTKYYKENIGNVKS VDEFLNNYQLYSYAMDAFGLGEMTYAKAFMKKVLESDLNDQNSFANKLTDERYREFAA SFNFTQSTTTVQTEAQLDKMIGLYDTSITNLDDSLSEETRYYKAIIGTVTNVDQLLQN DRTRAYIFEVFSIDEKTYSYSHIKGLMTSDIDDPNSYLNQKFGAAYSAAVEKLTTKGN IELHGDVTDRITAIDTALADTTLTAEQRTALETEKTTRQDQLTQLEAVLPPKDQWAAT LASITAEQTQLSNTVSQYNTMAQMAQAFEFANDGTVAAGQAQTADNVKILTQAYVGSA PRVTPTVATLNRDYFESKIGSIKTVDELMADPRLVNYIKVAFDLNDLTIVNATIENIL TSDLSDPNNYIAKFGNGDKRYIALREAFNFKADGTLPDGTAPQTTTQTVTTTNGYMNH YNDKDEAADENALKLFKSDIANVKSVADFLESSAVYTYALKAVGLDPTKVNIADVRRA LTSDLLDKKSYVYALKDDRYVKLAELFNFKSDGSPGSPVLAQSELEIQSMSVDYIKKK SAFGTDQEKEAAKKEAEFFRSELQKVKTLSDFLGNDRLTKFAMESLGIDPTKVTKDQL QKMFTSNLDDKDSYLNKEMDPAFRRLVTAFNFDTDGNILREDRSSIQTRRGLYETLDN YLTQTLETQAGEENAGVRLALYFKRMAAGTTSYYSILADTAIQNFITTTFGIPDELGN AGVDTQVAMMKKYFDIEDFQDPDKVKKLIARFTIMYDDKQNTTNPIMMLFNGSGSVGI SGDTLLAVASLRAR" misc_feature 604997..605407 /locus_tag="AGROH133_04160" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature <605708..606025 /locus_tag="AGROH133_04160" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature 605939..606376 /locus_tag="AGROH133_04160" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature 606290..606730 /locus_tag="AGROH133_04160" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature 606653..607111 /locus_tag="AGROH133_04160" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" gene complement(607336..608286) /locus_tag="AGROH133_04161" /db_xref="GeneID:10266353" CDS complement(607336..608286) /locus_tag="AGROH133_04161" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004277900.1" /db_xref="GI:325292036" /db_xref="GeneID:10266353" /translation="MSAPLDIDQLHTFIAIVDTGSFTKAAERVFKTQSAVSMQMRRLE ERIGKQLFAKDGRGNRLTAEGEKLMNYARRIIRLNNEAIAAFDDNRLEGTLRIGTPDD YADRYMPEIIGRFAKTHPNVELYIVCEPSVSLAEKMARGELDIALVTHNPRARSSDVV RTEPLCWVTSANHPLKDDAPVPLAVGRRDCHWRQLACSALDADGRDYQVLFTSWSSTV VAAAVLAGMAVSVLPESALRTGMKVLTASDGFPPLPPVQIGLMKRPGLSPSLVNAITD HITACLDNISPMNVADELDNDVKTYPKMPRLRAGHMLPGW" misc_feature complement(607396..608274) /locus_tag="AGROH133_04161" /note="DNA-binding transcriptional repressor LrhA; Provisional; Region: PRK15092" /db_xref="CDD:185048" misc_feature complement(608089..608268) /locus_tag="AGROH133_04161" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(607453..608007) /locus_tag="AGROH133_04161" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(607612..607617,607621..607626, 607642..607659,607903..607923,607927..607929, 607939..607941,607948..607953,607957..607962)) /locus_tag="AGROH133_04161" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 608491..608784 /locus_tag="AGROH133_04163" /db_xref="GeneID:10266354" CDS 608491..608784 /locus_tag="AGROH133_04163" /note="Protein of unknown function DUF1127" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277901.1" /db_xref="GI:325292037" /db_xref="GeneID:10266354" /translation="MRTAERKMELEFATGQQSDTLRRIAFGVASTVKTFVQRIYNRIV ANGLTELDDRLLADIGLARSDVTNALNTGLLEDPTAHLTRAARTRSVTRFKTL" gene complement(608992..610365) /gene="gsh1" /locus_tag="AGROH133_04164" /db_xref="GeneID:10266355" CDS complement(608992..610365) /gene="gsh1" /locus_tag="AGROH133_04164" /EC_number="6.3.2.2" /note="Glutamate-cysteine ligase family 2(GCS2); Gamma-glutamylcysteine synthetase" /codon_start=1 /transl_table=11 /product="glutamate-cysteine ligase" /protein_id="YP_004277902.1" /db_xref="GI:325292038" /db_xref="GeneID:10266355" /translation="MARDTTDQTPLSSVTELTDYLAGGCRAEADFRIGTEHEKFAFFR EGNRPVPYFGEASISALLKGMQEKLGWEPIMDGENIIGLGEQHGMGAISIEPGGQFEL SGAPLENLHQTCKESNQHLATLREVAEPMGIRFLGIGGSPLWSYDETPRMPKSRYAIM TRYMPKVGTKGLDMMYRTCTIQVNLDFSSEADMRQKMRVSMKLQSLATALFASSPFTE GKPNGLLSWRGDIWRDTDNRRSGVLPFTFNDDFGFKDYVEWALDVPMYFIVRDGKYHD CTHVTFRQFMNGALKGEIAEWEPTMGDWTNHLSTLFPDVRLKRFLEMRGADGGPWRRI CALPAFWVGLLYNQEALDAADALTADWSFDEVIALRNTVPAKGLAAEIAGKPLLGFAR EVLDISRTGLKNRNRLNGEGQDETVFLSSLDEVLAKKTTLAEDLLALYNGRWGGSVLP VFDEYQY" misc_feature complement(608995..610365) /gene="gsh1" /locus_tag="AGROH133_04164" /note="Glutamate-cysteine ligase family 2(GCS2); Region: GCS2; cl00954" /db_xref="CDD:186280" gene complement(610539..611324) /locus_tag="AGROH133_04165" /db_xref="GeneID:10266356" CDS complement(610539..611324) /locus_tag="AGROH133_04165" /note="Protein of unknown function DUF558, methyltransferase ; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277903.1" /db_xref="GI:325292039" /db_xref="GeneID:10266356" /translation="MAYVLPLSLTLKQKSPMRANFRMQRLFVETPLVAGAAQEATTEQ FNYLANVLRMTDGAEILLFNGRDGEWKARLSFPSRKKITLIPLEQTRPQPSASDLHYL FAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKIHNTEKLRANAIEAAEQCGILSL PDVAEPVKLKDMLETWPRDRRIIYCDEGDAGQNPLPVLQSIKERKIALLVGPEGGFSE EERELLRSLAFVTPIPLGPRILRADTAAVAALAVIQASIGDWN" misc_feature complement(610614..611264) /locus_tag="AGROH133_04165" /note="RNA methyltransferase; Region: Methyltrans_RNA; cl00611" /db_xref="CDD:186105" gene complement(611297..612802) /gene="pit" /locus_tag="AGROH133_04166" /db_xref="GeneID:10266357" CDS complement(611297..612802) /gene="pit" /locus_tag="AGROH133_04166" /note="Phosphate transporter family; Phosphate/sulphate permeases" /codon_start=1 /transl_table=11 /product="phosphate permease" /protein_id="YP_004277904.1" /db_xref="GI:325292040" /db_xref="GeneID:10266357" /translation="MAIKPPPNMKPTLDKDLEKITRVEEATLHVTQQLAGLGAGVMFV VLAAIFAGAFVTGTAGAVIIIAAVAIGAYMAINIGANDVTNNVGPAVGAKAMPLAAAL IIAAICEIAGALITGGNVVETISSGIINIQTIPDRTVFSWAMLSALLAAGLLVNISTW TKAPISTTHTVVGGVAGAGMAAYGIRAVDWLSLGSIAFAWVLAPFISAAIAIALLAFI KEFIIYREDKIDAAKRWVPVLIGIMTGVVTAYLIWVGLRQIVHVSLGHASGIGLLTGL VAWRLCVPIIRKQSVGLENRNQSLRTLFQWPLVLAAGLMSFAHGANDVSNAIGPVVAI VRALHDEAVETSARAPLWVMLVGAFGLSCGILLYGPRLIRLVGEQITKLNPMRAFCVS VATALTVLVASRFGLPVSTTHTAIGAVFGVGFFREWYTQASRRRQELVQAGTSQIRRA DRYLDNPSEIRRRYLVRRSHFMTIIAAWLVTVPASATLAALLYWLMSFLFL" misc_feature complement(611336..612571) /gene="pit" /locus_tag="AGROH133_04166" /note="Phosphate transporter family; Region: PHO4; cl00396" /db_xref="CDD:193801" gene complement(612964..613404) /locus_tag="AGROH133_04180" /db_xref="GeneID:10266358" CDS complement(612964..613404) /locus_tag="AGROH133_04180" /note="NUDIX domain; NTP pyrophosphohydrolases including oxidative damage repair enzymes" /codon_start=1 /transl_table=11 /product="NTP pyrophosphohydrolase, MutT family" /protein_id="YP_004277905.1" /db_xref="GI:325292041" /db_xref="GeneID:10266358" /translation="MLRRPPRQQYAALCYRSSKKHHEPEVLLLTSRDTGRWVIPKGWP MANKKAHAVAEQEAYEEAGVKGRVDKAPFGFYEYEKKLNSGINVLCKVQVHLLEVAEL QDSFPEKDSRRLEWVTPEEAAKRVNEPELKALMLTFDKRMALSK" misc_feature complement(613009..613383) /locus_tag="AGROH133_04180" /note="Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_9; cd04666" /db_xref="CDD:72903" misc_feature complement(613213..613281) /locus_tag="AGROH133_04180" /note="nudix motif; other site" /db_xref="CDD:72903" gene complement(613703..614464) /locus_tag="AGROH133_04181" /db_xref="GeneID:10266359" CDS complement(613703..614464) /locus_tag="AGROH133_04181" /EC_number="2.4.1.14" /note="Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria; Predicted hydrolases of the HAD superfamily" /codon_start=1 /transl_table=11 /product="sucrose-phosphate phosphatase" /protein_id="YP_004277906.1" /db_xref="GI:325292042" /db_xref="GeneID:10266359" /translation="MERRRLKPLRLFSTDLDGTVVGDNAATRRFRDFWHSLPDDLRPV LVFNSGRLVDDQLALLEDVPLPRPDYIIGGVGTMLHARERGELESAYTHSLGTGFDRQ KIADVMAGLPGVTMQAERYQHGLKSSWFLHGADEKTLSDIENTLVAADIDARIVYSSN RDLDILPKAADKGAALAWLCGQLHIGLDESVVAGDTGNDRAMFELNGIRGVIVGNALP ELLSLANNDSRFFLSRATEADGVIEGLQNWGLHTG" misc_feature complement(613715..614443) /locus_tag="AGROH133_04181" /note="Sucrose-6F-phosphate phosphohydrolase; Region: S6PP; pfam05116" /db_xref="CDD:191195" misc_feature complement(613826..>614026) /locus_tag="AGROH133_04181" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" gene complement(614446..615810) /locus_tag="AGROH133_04182" /db_xref="GeneID:10266360" CDS complement(614446..615810) /locus_tag="AGROH133_04182" /EC_number="2.4.1.14" /note="glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="glycosyltransferase" /protein_id="YP_004277907.1" /db_xref="GI:325292043" /db_xref="GeneID:10266360" /translation="MEKFTKMGPMTTTSETERYPRIALISTHGYVAAHPPLGAADTGG QVVYVLELARKLGQLGYTVDLYTRRFEDQPEFDEVDERVRVVRIPCGGRDFIPKEYLH RHLMEWCENALRFIKKNNLNYSFINSHYWDAGVAGQRLSEALKVPHLHTPHSLGLWKK RQMETDYPEKADTFELEFNFKERIQHELIIYRSCDMVIATTPVQLDVLIEDYGLKRKH IHMIPPGYDDNRFFPVSDATRQMIRQRFGFEGKVVLALGRLATNKGYDLLIDGFSVLA AREPEARLHLAVGGENMDEQETTILNQLKERVKSLGLEDKVAFSGYVEDEDLPDIYRA ADLFVLSSRYEPFGMTAIEAMASGTPTVVTIHGGLFRAVSYGRHALFADPFDKEDLGI TMMKPFKHERLYGRLSRMGAHKARSLFTWTGIAQQLLALVEGRPLMPVLEESDWAEPW NDGD" misc_feature complement(614512..615750) /locus_tag="AGROH133_04182" /note="sucrose-phosphate synthase, putative, glycosyltransferase domain; Region: sucr_P_syn_N; TIGR02472" /db_xref="CDD:131525" misc_feature complement(614521..615750) /locus_tag="AGROH133_04182" /note="This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose...; Region: GT1_Sucrose_synthase; cd03800" /db_xref="CDD:99973" misc_feature complement(order(614761..614763,614827..614829, 615037..615045,615679..615681)) /locus_tag="AGROH133_04182" /note="putative ADP-binding pocket [chemical binding]; other site" /db_xref="CDD:99973" gene complement(615895..616668) /locus_tag="AGROH133_04183" /db_xref="GeneID:10266361" CDS complement(615895..616668) /locus_tag="AGROH133_04183" /note="GntR, C-terminal, FCD domain; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004277908.1" /db_xref="GI:325292044" /db_xref="GeneID:10266361" /translation="MDETLFARIEHSRTSQEVILRFEELILDGILRDGDRLPGERELA QKLDVSRPILREALKELETRGLLTSRHGGGTYVADIVGPVFSDPLSALITRHSRATRD FLEYRRYIEGMTAELAAQRATEPDRRNLAAIVEKMREAHEAGRFEEELASDVEFHNAI GEAAHNIVLMHTLRSCYRLLSDDIFYNRHLIFSVAGAHDEVLRQHIAIHEAIAGGNAA GARAAAETHIDFIVDTTSKAHQAREWDRISRLRQQQRNA" misc_feature complement(615934..616653) /locus_tag="AGROH133_04183" /note="Transcriptional regulators [Transcription]; Region: FadR; COG2186" /db_xref="CDD:32369" misc_feature complement(616435..616626) /locus_tag="AGROH133_04183" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(616444..616455,616459..616464, 616492..616494,616501..616506,616510..616524, 616546..616551,616555..616557,616624..616626)) /locus_tag="AGROH133_04183" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(<616054..616365) /locus_tag="AGROH133_04183" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene 616959..618233 /locus_tag="AGROH133_04185" /db_xref="GeneID:10266362" CDS 616959..618233 /locus_tag="AGROH133_04185" /note="Uncharacterized membrane-anchored protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277909.1" /db_xref="GI:325292045" /db_xref="GeneID:10266362" /translation="MAKGRFAFASAPERSLALGEVHARPTVLLAPSRIIVQLAFMMDG GSAVHHSVIAEMSRSRGVAPPERDARHHAMPWGQGTLRWERHTEFSTWFWDGPAPEKF GGDIVGDPFGDGFSPPGSLISGIRLEIRPEGATAPNAETMFEPTSLCYSDVRDGQAAI LTDFRQDRDGLTQILVIDRGLSDYSRGALVQRLLDIETYRTLAMLGLPMAQTLSPEIR RIEDGLTGITQRMKNGARDEADALLAEMTRLAAELEANAALSLYRFGASRAYDGIVHE RIRALAETPVQGHETMGSFLERRLAPAMRTCQSVEERQANLSRKLYRATALVRSWIDV ELERQNTVLLNTMNKRAAMQLRLQQTVEGLSVAAISYYVVGLIGYLTKAISHDVLPVD PAVVTGLSVPFAVLGVWWVVRRIRRSHVEGGH" misc_feature 616959..618230 /locus_tag="AGROH133_04185" /note="Protein of unknown function (DUF3422); Region: DUF3422; cl02073" /db_xref="CDD:154733" gene complement(618243..619142) /locus_tag="AGROH133_04188" /db_xref="GeneID:10266363" CDS complement(618243..619142) /locus_tag="AGROH133_04188" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004277910.1" /db_xref="GI:325292046" /db_xref="GeneID:10266363" /translation="MTNLGDLEVFATVAASGSMSLAAKELGYSPAVISKRIKRLEEKL GARLFQRTTRQISLTEAGQGFYERVLAVLEGLEDAEDFVSGRANTVNGTLKISAPTSF GRMHIAPHLKTFMERHPDLSVNLVLSDEFIDIIEGGYDLAIRIADLNSSSLVARRLAP VRRVLCASAEYVTAHGMPATIEDLKKHRCLPAHNNDIWRLEGPGGALSIRPEGMLVTN SSEVIREAVISGLGIALRSTWDIGHELRAGRLVQVLPSYEGSRNVTLSAVYPSRQFLP AKVRLFIDYLAGLYGPSPYWEHD" misc_feature complement(618954..619133) /locus_tag="AGROH133_04188" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(618282..619127) /locus_tag="AGROH133_04188" /note="transcriptional activator TtdR; Provisional; Region: PRK09801" /db_xref="CDD:182085" misc_feature complement(618285..618869) /locus_tag="AGROH133_04188" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422" /db_xref="CDD:176114" misc_feature complement(order(618348..618350,618432..618434, 618483..618485,618660..618662,618666..618668, 618708..618710,618825..618827,618837..618839)) /locus_tag="AGROH133_04188" /note="putative effector binding pocket; other site" /db_xref="CDD:176114" misc_feature complement(order(618456..618458,618465..618470, 618489..618503,618579..618581,618762..618782, 618786..618788,618798..618800,618807..618812, 618816..618821,618831..618836)) /locus_tag="AGROH133_04188" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176114" gene 619241..620689 /gene="glcD" /locus_tag="AGROH133_04190" /db_xref="GeneID:10266364" CDS 619241..620689 /gene="glcD" /locus_tag="AGROH133_04190" /EC_number="1.1.3.15" /note="glycolate oxidase subunit; FAD/FMN-containing dehydrogenases" /codon_start=1 /transl_table=11 /product="glycolate oxidase subunit GlcD" /protein_id="YP_004277911.1" /db_xref="GI:325292047" /db_xref="GeneID:10266364" /translation="MEEGAVTQPIKFLEPRAAVLSSRDRIISDLKDILAEDCLVHEPR ELVPFETDAFVSYRRLPLAVALPKTTEEVAAVLKYCHRYGIPVVPRGAGTSLSGGAIP QEDAVVIGLSKMSAILELDFYNRTARVQAGVTNLSISDAAGAEGFFYAPDPSSQLACT IGGNVGMNSGGAHCLKYGVTTNNLLGVKMVLVDGTVLELGGKHLDAAGYDLLALICGS EGQLGIVTEATVRLIAKPEGARPVLFGFETSEEAGSCVADIIGAGIIPVAIEFMDKPA IEICEAFAKAGYPLDVGALLIVEVEGSEAEMDAMLADIVAIAKKHGVKTVRECQSAME AAAIWKGRKSAFGATGRIADYICMDGTVPLSQLSYVLKKTSEITDRLGLRVANVFHAG DGNMHPLILFNANDPEDAARAEEAGNEILKLCVDAGGCLTGEHGVGIEKRDLMRHQYA EADLAQQMAVRAAFDEGWLMNPSKVFPLEGRG" misc_feature 619307..620671 /gene="glcD" /locus_tag="AGROH133_04190" /note="glycolate oxidase subunit GlcD; Provisional; Region: PRK11230" /db_xref="CDD:183043" misc_feature 619421..619840 /gene="glcD" /locus_tag="AGROH133_04190" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene 620781..621983 /gene="glcE" /locus_tag="AGROH133_04191" /db_xref="GeneID:10266365" CDS 620781..621983 /gene="glcE" /locus_tag="AGROH133_04191" /EC_number="1.1.3.15" /note="FAD linked oxidase, C-terminal; FAD/FMN-containing dehydrogenases" /codon_start=1 /transl_table=11 /product="glycolate oxidase, subunit GlcE" /protein_id="YP_004277912.1" /db_xref="GI:325292048" /db_xref="GeneID:10266365" /translation="MLTPYAETQVADIIRDHTTRKTPLKIIGGNTRSGFGNAVEADET LSSRAMSGIIAYNPAEMVMTVKAGTPLATVEAALAENRQMMAFEPMDHRPIMGTTGEP TIGGVFAANVSGPRRYVAGAARDSLLGIRFVNGKAEVIKAGGRVMKNVTGLDLSKLLA GSHGTLGFLTEVTFRVLPKPPAEKTVVVSGLDDEAATRIMAAAMAMSVEVSGAAHLPE SVRSHFIAGALPEGPATILRLEGLGASVEARAAKLLSVMDRVGPWALLEGEESAVLWR QVRNVAPYAGQDAKPLWKVSVAPSEGHRLVAALRMEAGIDAFYDWQGGLIWMQMEADP EAELLRGAIRALGGGHATLIRASDAVRATVPAFEPRPAAEAILSARIREKLDPAGIFN PGKMGRAV" misc_feature 620805..621209 /gene="glcE" /locus_tag="AGROH133_04191" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" misc_feature 620811..621968 /gene="glcE" /locus_tag="AGROH133_04191" /note="glycolate oxidase FAD binding subunit; Provisional; Region: glcE; PRK11282" /db_xref="CDD:183074" gene 621987..623288 /gene="glcF" /locus_tag="AGROH133_04192" /db_xref="GeneID:10266366" CDS 621987..623288 /gene="glcF" /locus_tag="AGROH133_04192" /EC_number="1.1.3.15" /note="glycolate oxidase, iron-sulphur subunit; Fe-S oxidoreductase" /codon_start=1 /transl_table=11 /product="glycolate oxidase, iron-sulfur subunit" /protein_id="YP_004277913.1" /db_xref="GI:325292049" /db_xref="GeneID:10266366" /translation="MQTSFTPEQLADPHVAESEKILRKCVHCGFCTATCPTYVTLGNE LDSPRGRIYLIKDMLENSRPADREVVTHIDRCLSCLACTTTCPSGVDYMHLVDHARAH IEQTYKRPFMDRLTRNLLAAVLPYPGRFRLALHLARITRPFAGVLAKFPALKPLQSML ALAPASVPAVSASARPGERSAEGEKRGRVAILTGCAQPVLDPGINEATLRLLARLGVE VVVPKGEGCCGSLVHHMGREAEALAAARRNVDVWMREMENGGLDAVIITASGCGTTIK DYGHMLRLDPAYADKAARVSALAKDITEYLATLDLPQKESQGLTVAYHSACSMQHGQK ITMAPKQLLKAAGFTVRDPAEGHLCCGSAGTYNIMQPEISGKLKARKVRNIEATRADV IATGNIGCITQIATGTEMPILHTVELLDWAYGGPKPARLLA" misc_feature 621987..623246 /gene="glcF" /locus_tag="AGROH133_04192" /note="glycolate oxidase iron-sulfur subunit; Provisional; Region: glcF; PRK11274" /db_xref="CDD:183069" misc_feature <622023..>622283 /gene="glcF" /locus_tag="AGROH133_04192" /note="The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-; Region: HCP_like; cl14655" /db_xref="CDD:187409" misc_feature 622620..622814 /gene="glcF" /locus_tag="AGROH133_04192" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" misc_feature 623013..623198 /gene="glcF" /locus_tag="AGROH133_04192" /note="Cysteine-rich domain; Region: CCG; pfam02754" /db_xref="CDD:111630" gene complement(623524..624183) /locus_tag="AGROH133_04193" /db_xref="GeneID:10266367" CDS complement(623524..624183) /locus_tag="AGROH133_04193" /note="Outer membrane protein, beta-barrel" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277914.1" /db_xref="GI:325292050" /db_xref="GeneID:10266367" /translation="MLRHVSILCALLLSGVSFSSAIAGEFEFSGYGGWQSAPHSDVTV SDGTDFRAGWEGKSFSSPAYWGVRGTYWFEEGQLNNLGISLDYTHDKVYADDQTLARS GWSHFEFTDGLNLLTLNALYRFPLETWRLTPYVGAGVGINVPHVEVTRASGKTFEYQF GGATLQAQAGLSYRITDNWSTFVEYKGTYSFIDVDIDNGGKLKTDIMTNAVNFGVAYK F" misc_feature complement(623527..624168) /locus_tag="AGROH133_04193" /note="Surface antigen; Region: Surface_Ag_2; cl01155" /db_xref="CDD:194055" gene complement(624447..625271) /locus_tag="AGROH133_04195" /db_xref="GeneID:10266368" CDS complement(624447..625271) /locus_tag="AGROH133_04195" /note="ErfK/YbiS/YcfS/YnhG; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277915.1" /db_xref="GI:325292051" /db_xref="GeneID:10266368" /translation="MIPQLLLLRHTAERVHPMTMKSVFLALSLVSTFAAPAAAAGERY RERPPVVVSPDLSAPWVTQLGGGNVRPVVYPRAPAARQPFFQQRQAAMPQRPSSGVTS QRPARVQNAAVRPNAPVRTQIAPQFLPQIVSYQTTQKPGTIVIDTPNRFLYLVMADGK ARRYGVGVGKPGFEWAGTHKVTRKAEWPSWTPPKEMISREATKGHYLPAFMEGGPANP MGARAMYLGSTLYRIHGTNQPWTIGSNNSSGCIRMRNEDVTDLYERVNVGTTVIVI" misc_feature complement(624453..624854) /locus_tag="AGROH133_04195" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene 625458..626087 /gene="tag" /locus_tag="AGROH133_04197" /db_xref="GeneID:10266369" CDS 625458..626087 /gene="tag" /locus_tag="AGROH133_04197" /EC_number="3.2.2.20" /note="DNA glycosylase; 3-methyladenine DNA glycosylase" /codon_start=1 /transl_table=11 /product="3-methyladenine-DNA glycosylase I" /protein_id="YP_004277916.1" /db_xref="GI:325292052" /db_xref="GeneID:10266369" /translation="MNEAGLETGADGRVRCFWQQGLEDYSRYHDREWGYPVTDDRRLF EKICLEGFQSGLSWLTVLRKREAFRLAFANFEFEKVAQFGEADIERCVADKGIIRHRG KIVSTINNARRAIALRDEFGSLAHYFWGFEPSAAERPQRLDYATLRANPTSDASIRLS RDLKKRGWTFVGPTTVYAFMQAMGMVNDHIEGCHCREPIEAMRREFVRP" misc_feature 625509..626048 /gene="tag" /locus_tag="AGROH133_04197" /note="Methyladenine glycosylase; Region: Adenine_glyco; cl01059" /db_xref="CDD:194022" gene 626084..626527 /locus_tag="AGROH133_04198" /db_xref="GeneID:10266370" CDS 626084..626527 /locus_tag="AGROH133_04198" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277917.1" /db_xref="GI:325292053" /db_xref="GeneID:10266370" /translation="MKAKSLLLAFAMAVAAVPHPSLAESRNVDGIWLDDGERLKEVAL PPTGPLKLDGWTRRGRGDVYRLKVKAGQTMKVELTSSSEFVLMAIFDFSTPDQDAIFF SDSEGKIATLTPKADTEWLIRPTLILGSPRRGLGAHYILTVSTQK" gene complement(626543..627610) /locus_tag="AGROH133_04200" /db_xref="GeneID:10266371" CDS complement(626543..627610) /locus_tag="AGROH133_04200" /note="Conserved hypothetical protein CHP00698; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277918.1" /db_xref="GI:325292054" /db_xref="GeneID:10266371" /translation="MPFRHCLAMAQHRTLTHPFQSSFRSLTPLLPGILLCAAVSCAAI LAERFQVRLAGHAWLGDLVLAILIGTLLRSLVSLPAVASAGIKFSAKTLLEIAVALLG ASLSLAILKGAGGLLIGGIAVIVALSLIFSYAAGRMLGLPPKLATLIACGNSICGNSA IAAAAPAIGAKPEDVAASIAFTAVLGVAAVLLMPFLPQLLGLDATQYGIFAGLTVYAV PQVLAATAPLGAVAVQTGTIVKLIRVLMLGPVIAALSVIHGQSGKGRLKLQQMVPWFI ICFVLMIMARSFGLIPEVLLGPLASLSNILTIMSMAALGLSVDIRSLRHAGGKVIVAA SLSLVLLGILSFGLIALTQTA" misc_feature complement(626624..627547) /locus_tag="AGROH133_04200" /note="Conserved hypothetical protein 698; Region: Cons_hypoth698; cl01075" /db_xref="CDD:141086" gene 627669..628586 /locus_tag="AGROH133_04212" /db_xref="GeneID:10266372" CDS 627669..628586 /locus_tag="AGROH133_04212" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004277919.1" /db_xref="GI:325292055" /db_xref="GeneID:10266372" /translation="MTFEQLRIFIAVAEREHLTRAAQAIGLTASAVSSAIKNLEAFYN VELFHRVGRNIELTESGRVFLGEARATLARVRSAELILSEMGGLTRGEITVCASQTIA SYWLPPILMQFKKLYPGVTLKLDIGNTKTVTQAVLDGLAEVGFIEGKIDEPALMVQPV VSDKLLVVTGSAHPFADGRYLTALDILYGTSWVLREQGSGTRSAFEAAVRQMGVDPAD LSVMLELPSNEAVVMAARSGGAATAVSASVASLFLRQGLLVRAGIDLPARNFALLRHK ERHTSRAAMELERLSRAASEDYKAGLAGL" misc_feature 627669..628544 /locus_tag="AGROH133_04212" /note="putative DNA-binding transcriptional regulator; Provisional; Region: PRK10837" /db_xref="CDD:182768" misc_feature 627675..627854 /locus_tag="AGROH133_04212" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 627942..628520 /locus_tag="AGROH133_04212" /note="C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold; Region: PBP2_CysL_like; cd08420" /db_xref="CDD:176112" misc_feature order(627987..627992,627996..628001,628008..628010, 628020..628022,628026..628046,628332..628349, 628365..628370,628374..628379) /locus_tag="AGROH133_04212" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176112" gene complement(628638..629402) /locus_tag="AGROH133_04214" /db_xref="GeneID:10266373" CDS complement(628638..629402) /locus_tag="AGROH133_04214" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277920.1" /db_xref="GI:325292056" /db_xref="GeneID:10266373" /translation="MILEALQYAATRAATPKPFRPHIRYSVNLWARANRCATAWAEHE NNSQQFVLQSVRKLKQRRTAVVLGSGLLRDVPYDALVAMFDTVVLVDLVHLASVQAKL RFNSKKNVRIVNRDLSGFDDIVAGKEPEPLEFLRRVPYLDFVVSANLLSQIGTGARHR LEREKIAGAPDDLLPRLIQTHLDALAALPCKVCLVTDTSFDVIGKDGSLHQHEDLLHG ADLSAPAAAWEWPLAPLGEESRDYRIVHHVVAHELT" gene complement(629409..629678) /locus_tag="AGROH133_04215" /db_xref="GeneID:10266374" CDS complement(629409..629678) /locus_tag="AGROH133_04215" /note="Addiction module toxin, RelE/StbE" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277921.1" /db_xref="GI:325292057" /db_xref="GeneID:10266374" /translation="MIWTIEYDVLVQKEMRKIDSQTRQRIRAFLQERVAALDNPRQTG AALQGSELGSFWRYRVGDYRIICDIQDHKLVVLVVEIGHRREIYR" misc_feature complement(629412..629678) /locus_tag="AGROH133_04215" /note="Plasmid stabilisation system protein; Region: Plasmid_stabil; cl11422" /db_xref="CDD:196226" gene complement(629662..629889) /locus_tag="AGROH133_04216" /db_xref="GeneID:10266375" CDS complement(629662..629889) /locus_tag="AGROH133_04216" /note="Ribbon-helix-helix; Predicted DNA-binding protein with an HTH domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277922.1" /db_xref="GI:325292058" /db_xref="GeneID:10266375" /translation="MSKQTAIRLPDETYERLKALSERTGRTSAYYIREAIEKHIEDME DLYLAEEATRRIQRGESKVVSAEEFWRDLDN" misc_feature complement(629668..629889) /locus_tag="AGROH133_04216" /note="Predicted DNA-binding protein with an HTH domain [General function prediction only]; Region: COG4710" /db_xref="CDD:34326" gene 630046..631569 /gene="hisS" /locus_tag="AGROH133_04217" /db_xref="GeneID:10266376" CDS 630046..631569 /gene="hisS" /locus_tag="AGROH133_04217" /EC_number="6.1.1.21" /note="catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is" /codon_start=1 /transl_table=11 /product="Histidyl-tRNA synthetase" /protein_id="YP_004277923.1" /db_xref="GI:325292059" /db_xref="GeneID:10266376" /translation="MSEKAKKPQKLKARLPRGFVDRSAADIHATNEMIDKIRKVYELY GFDPVETPLFEYTDALGKFLPDSDRPNEGVFSLQDDDDQWMSLRYDLTAPLARHVAEN FNEIQLPYRTYRAGYVFRNEKPGPGRFRQFMQFDADTVGAAGVQADAEMCMMMADTLE ALGIARGDYVIRVNNRKVLDGVMEAIGLGGEENAGRRLNVLRAIDKLDKFGPDGVKLL LGPGRKDESGDFTKGAGLGEEQIEKVLFFVGIKDYAESADDLAKLVAGTSKGAEGVDE LNIIGSLVSGAGYDATRIKIDPSVVRGLEYYTGPVYEAELTFDVTNEKGEKVVFGSVG GGGRYDGLVSRFMGQPVPATGFSIGVSRLMTALKNLGKLGQVKPLAPVLITVMDGDVD SMGRYQRFTQALRAEGIRAEMYQGNWKKFGNQLKYADRLGSPIAIIQGGDERAEGVVQ IKDLIEGKRLSGEIEDNASWREARVAQITAPETELVAKVREILEHHAEDVRRAAEGH" misc_feature 630073..631527 /gene="hisS" /locus_tag="AGROH133_04217" /note="histidyl-tRNA synthetase; Reviewed; Region: hisS; PRK00037" /db_xref="CDD:178812" misc_feature 630136..631149 /gene="hisS" /locus_tag="AGROH133_04217" /note="Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: HisRS-like_core; cd00773" /db_xref="CDD:73226" misc_feature order(630136..630138,630172..630174,630187..630207, 630274..630279,630313..630315,630319..630321, 630334..630339,630346..630351,630433..630438, 630457..630459,630481..630483,630493..630495, 630502..630504,631054..631056,631108..631113) /gene="hisS" /locus_tag="AGROH133_04217" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73226" misc_feature 630181..630207 /gene="hisS" /locus_tag="AGROH133_04217" /note="motif 1; other site" /db_xref="CDD:73226" misc_feature order(630313..630315,630319..630321,630403..630405, 630409..630411,630430..630432,630439..630441, 630445..630447,630457..630459,630898..630900, 630904..630906,630910..630912,630964..630966, 631039..631041,631054..631056,631111..631113, 631120..631122,631129..631131) /gene="hisS" /locus_tag="AGROH133_04217" /note="active site" /db_xref="CDD:73226" misc_feature 630400..630414 /gene="hisS" /locus_tag="AGROH133_04217" /note="motif 2; other site" /db_xref="CDD:73226" misc_feature order(631108..631122,631129..631131) /gene="hisS" /locus_tag="AGROH133_04217" /note="motif 3; other site" /db_xref="CDD:73226" misc_feature 631183..631515 /gene="hisS" /locus_tag="AGROH133_04217" /note="HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859" /db_xref="CDD:29799" misc_feature order(631204..631209,631321..631323,631339..631341, 631363..631365,631393..631395,631399..631401) /gene="hisS" /locus_tag="AGROH133_04217" /note="anticodon binding site; other site" /db_xref="CDD:29799" gene 631532..631942 /locus_tag="AGROH133_04218" /db_xref="GeneID:10266377" CDS 631532..631942 /locus_tag="AGROH133_04218" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277924.1" /db_xref="GI:325292060" /db_xref="GeneID:10266377" /translation="MQRTFAAPLKGTEAMAILALDHLQLAMPVGREDEARAFYGDLLG FAEQAKPANLAARGGCWFSSGPIKLHLGIDQDFRPARKAHPAFLVDDLSILRKTLETA GYHVVEDEPLEGCHRFYVLDPFGNRIEMMQPLEP" misc_feature 631589..631921 /locus_tag="AGROH133_04218" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_9; cd07245" /db_xref="CDD:176669" misc_feature order(631589..631603,631607..631609,631655..631660, 631664..631666,631712..631714,631721..631726, 631778..631801,631811..631816,631823..631825, 631916..631921) /locus_tag="AGROH133_04218" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176669" misc_feature order(631595..631597,631781..631783,631916..631918) /locus_tag="AGROH133_04218" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176669" gene 631959..633086 /gene="hisZ" /locus_tag="AGROH133_04219" /db_xref="GeneID:10266378" CDS 631959..633086 /gene="hisZ" /locus_tag="AGROH133_04219" /note="May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase involved in histidine biosynthesis" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase regulatory subunit" /protein_id="YP_004277925.1" /db_xref="GI:325292061" /db_xref="GeneID:10266378" /translation="MPLIDMPEFSGELLEEFAARRTSRVNTPVIQPAEPFLDMAGEDL RRRIFMTESETGESLCLRPEFTIPVCLRHIETATGTPKRYSYLGEVFRQRREGANEFY QAGIEDLGDTDIAAADARAVIDATAILKRLLPGRSLAVTLGDQQVFEAVVAALGLPLG WQKRLVQAFGDMAQLDALLESLVHPKPMTGLDARVAGLLATGEEAVLVDYLDTVMQET GYSTNASRSPQEIARRLREKLALAATRLPDESFELLKQFLALQAPLPQASQVLADFAA KAKLKLDGALSAFDKRVAALANAGVDLETVSYGAAFGRPLDYYTGLVFEVMEEGSDSV LAGGGRFDRLLTLLGAQEKIPAVGFSLWLDRIETVRGSDKP" misc_feature 631959..633074 /gene="hisZ" /locus_tag="AGROH133_04219" /note="ATP phosphoribosyltransferase regulatory subunit; Provisional; Region: hisZ; PRK12295" /db_xref="CDD:183413" misc_feature 631995..>632519 /gene="hisZ" /locus_tag="AGROH133_04219" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:193739" misc_feature 632022..632036 /gene="hisZ" /locus_tag="AGROH133_04219" /note="motif 1; other site" /db_xref="CDD:29813" misc_feature order(632025..632030,632034..632036,632169..632174, 632229..632231,632235..632237,632331..632333) /gene="hisZ" /locus_tag="AGROH133_04219" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29813" misc_feature order(632148..632150,632154..632156,632232..632234, 632259..632261,632265..632267,632271..632279) /gene="hisZ" /locus_tag="AGROH133_04219" /note="active site" /db_xref="CDD:29813" misc_feature 632229..632237 /gene="hisZ" /locus_tag="AGROH133_04219" /note="motif 2; other site" /db_xref="CDD:29813" misc_feature <632823..633068 /gene="hisZ" /locus_tag="AGROH133_04219" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:193739" misc_feature order(633042..633044,633051..633053) /gene="hisZ" /locus_tag="AGROH133_04219" /note="motif 3; other site" /db_xref="CDD:29813" gene 633083..633775 /gene="hisG" /locus_tag="AGROH133_04220" /db_xref="GeneID:10266379" CDS 633083..633775 /gene="hisG" /locus_tag="AGROH133_04220" /EC_number="2.4.2.17" /note="short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase catalytic subunit" /protein_id="YP_004277926.1" /db_xref="GI:325292062" /db_xref="GeneID:10266379" /translation="MITIALPSKGRMKEDASAVLERAGLKVAAVGNDRSYRGRIEGRD DIEIAYLSASEIAREIGAGSVDFGVTGEDLVREGLTNADAQVEFCARLGFGHADVVVA VPEIWLDVDSMADLGDVASEFRARHGRRLAIATKYWRLTQQFFSRQHGIQLYRIVESL GATEGAPAAGQADIIVDITSTGSTLKANHLKILSDGIIVRSEACFVRARKPEHEGDPA VQEIAARIKAAV" misc_feature 633083..633763 /gene="hisG" /locus_tag="AGROH133_04220" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(633839..634285) /locus_tag="AGROH133_04221" /db_xref="GeneID:10266380" CDS complement(633839..634285) /locus_tag="AGROH133_04221" /note="Surfeit locus 4-related, DoxX; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277927.1" /db_xref="GI:325292063" /db_xref="GeneID:10266380" /translation="MSSSQNALVLIARILLSFIFIYSGFGKLTDPAGTAGMISGAGMP AATALAYLAGLFELVAGLAILAGFQTKIAAWALAAFCVFTGLVFHSGTVAVPGWPEPA LGWINTLNGIMLMKNITLAGAYILLATFGAGAYSVDAKRGFVTARA" misc_feature complement(633860..634285) /locus_tag="AGROH133_04221" /note="DoxX; Region: DoxX; cl00976" /db_xref="CDD:154119" gene complement(634547..634966) /locus_tag="AGROH133_04226" /db_xref="GeneID:10266381" CDS complement(634547..634966) /locus_tag="AGROH133_04226" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277928.1" /db_xref="GI:325292064" /db_xref="GeneID:10266381" /translation="MFEISRRNDALPAAATTMPDTQTLSHFFISEEWSGDLSSGVIKL GEHASFMHGLPQGECGLLSLIRCYDRGHHDRVLEIFEQASAAPSRFCFSTGLFTLPAM RQPLICMGESSGFEIGQQGRISGLFLFPRFEDMRFAA" gene complement(635720..637354) /gene="groEL" /locus_tag="AGROH133_04227" /db_xref="GeneID:10266382" CDS complement(635720..637354) /gene="groEL" /locus_tag="AGROH133_04227" /note="60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; Chaperonin GroEL (HSP60 family)" /codon_start=1 /transl_table=11 /product="GroEL chaperonin" /protein_id="YP_004277929.1" /db_xref="GI:325292065" /db_xref="GeneID:10266382" /translation="MAAKEVKFGRTAREKMLKGVDILADAVKVTLGPKGRNVVIDKSF GAPRITKDGVSVAKEIELEDKFENMGAQLVREVASKTNDIAGDGTTTATVLAQAIVRE GAKAVAAGMNPMDLKRGIDLAVAEVVKDLQAKAKKINTSEEVAQVGTISANGERQIGL DIAEAMQRVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDA YILLHEKKLSNLQAMLPVLEAVVQTGKPLVIIAEDVEGEALATLVVNKLRGGLKIAAV KAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGKSKKVSISKENTTIVD GAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEK KDRIDDALNATRAAVQEGIVPGGGVALLRSSTKITVKGENDDQEAGINIVRKALQSLV RQIAENAGDEASIVVGKILDRNEDNYGYNAQTGEYGDLIQLGIVDPVKVVRTALQNAA SVASLLITTEAMIAELPKKESAMPQMPGGGMGGMDF" misc_feature complement(635765..637351) /gene="groEL" /locus_tag="AGROH133_04227" /note="chaperonin GroEL; Reviewed; Region: groEL; PRK12849" /db_xref="CDD:183791" misc_feature complement(635786..637345) /gene="groEL" /locus_tag="AGROH133_04227" /note="GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344" /db_xref="CDD:48161" misc_feature complement(order(635789..635809,635816..635818, 635981..635983,636197..636199,636203..636205, 636584..636586,636668..636670,636764..636766, 637127..637129,637136..637138,637148..637150, 637172..637174,637178..637180,637208..637210, 637214..637219,637232..637234,637238..637249, 637280..637282,637331..637333,637343..637345)) /gene="groEL" /locus_tag="AGROH133_04227" /note="ring oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:48161" misc_feature complement(order(635870..635872,635876..635878, 635996..635998,636110..636112,636161..636163, 636905..636907,637082..637084,637094..637096, 637256..637264)) /gene="groEL" /locus_tag="AGROH133_04227" /note="ATP/Mg binding site [chemical binding]; other site" /db_xref="CDD:48161" misc_feature complement(order(635957..635959,635966..635971, 635975..635977,636002..636004,636056..636058, 637028..637030)) /gene="groEL" /locus_tag="AGROH133_04227" /note="stacking interactions; other site" /db_xref="CDD:48161" misc_feature complement(order(636125..636130,636230..636232, 636776..636778,636797..636799,636932..636934)) /gene="groEL" /locus_tag="AGROH133_04227" /note="hinge regions; other site" /db_xref="CDD:48161" gene complement(637429..637725) /gene="groES" /locus_tag="AGROH133_04228" /db_xref="GeneID:10266383" CDS complement(637429..637725) /gene="groES" /locus_tag="AGROH133_04228" /note="10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans rin; Co-chaperonin GroES (HSP10)" /codon_start=1 /transl_table=11 /product="co-chaperonin GroES" /protein_id="YP_004277930.1" /db_xref="GI:325292066" /db_xref="GeneID:10266383" /translation="MTSTNFRPLHDRVVVRRVESEAKTKGGIIIPDTAKEKPQEGEIV AVGSGARDEAGKVVALDVKVGDRVLFGKWSGTEVKLDGEDLLIMKEADIMGIIG" misc_feature complement(637435..637713) /gene="groES" /locus_tag="AGROH133_04228" /note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts...; Region: cpn10; cd00320" /db_xref="CDD:73192" misc_feature complement(order(637438..637446,637492..637494, 637498..637500,637513..637515,637543..637545, 637606..637611,637690..637692,637699..637701, 637705..637707,637711..637713)) /gene="groES" /locus_tag="AGROH133_04228" /note="oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:73192" misc_feature complement(637624..637665) /gene="groES" /locus_tag="AGROH133_04228" /note="mobile loop; other site" /db_xref="CDD:73192" misc_feature complement(order(637549..637551,637582..637584)) /gene="groES" /locus_tag="AGROH133_04228" /note="roof hairpin; other site" /db_xref="CDD:73192" gene 637978..638943 /locus_tag="AGROH133_04229" /db_xref="GeneID:10266384" CDS 637978..638943 /locus_tag="AGROH133_04229" /note="HAD-superfamily hydrolase, subfamily IIA, hypothetical 3; Predicted sugar phosphatases of the HAD superfamily" /codon_start=1 /transl_table=11 /product="hydrolase protein, HAD superfamily" /protein_id="YP_004277931.1" /db_xref="GI:325292067" /db_xref="GeneID:10266384" /translation="MFVWWPVVRRQAWRSFFPCHRRPALPCDAHPFFAPGKHIMAHRI LTLGEITDGFDVVLSDVWGVLHNGVSAFPDAAVALHDARKAGKTVVLITNSPRPAPGV IAQLRVLGVPDEAYDRIITSGDVTRGLIAEGPRKVFLLGPERDMPLLEGLDVERVGEV EAESVVCTGFFDDETETPEDYTEMLKGFIARKVPMICANPDLVVERGERIIPCAGAMA AYYEQLGGEVRIAGKPHAPIYEACLAAAKEVRGDFPKDRVLAIGDGMPTDVKGAIASG LNLLYISGGIHAAEYTLNGQTDEALLNAYLKGQGAAPGWWMPRLA" misc_feature 638116..638940 /locus_tag="AGROH133_04229" /note="Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]; Region: NagD; COG0647" /db_xref="CDD:30992" misc_feature 638143..>638415 /locus_tag="AGROH133_04229" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature order(638155..638163,638254..638259) /locus_tag="AGROH133_04229" /note="active site" /db_xref="CDD:119389" misc_feature 638155..638172 /locus_tag="AGROH133_04229" /note="motif I; other site" /db_xref="CDD:119389" misc_feature 638254..638256 /locus_tag="AGROH133_04229" /note="motif II; other site" /db_xref="CDD:119389" misc_feature <638605..638808 /locus_tag="AGROH133_04229" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" gene 638987..639967 /gene="ribF" /locus_tag="AGROH133_04230" /db_xref="GeneID:10266385" CDS 638987..639967 /gene="ribF" /locus_tag="AGROH133_04230" /EC_number="2.7.1.26" /EC_number="2.7.7.2" /note="catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; FAD synthase" /codon_start=1 /transl_table=11 /product="bifunctional riboflavin kinase/FMN adenylyltransferase" /protein_id="YP_004277932.1" /db_xref="GI:325292068" /db_xref="GeneID:10266385" /translation="MTVFHRNEKKEPLPEGLRGGVIAIGNFDGVHRGHRAVLDRALEL AEARGVPALVLTFEPHPRSVFRPETPVFRLTPAPLKARILEAIGFRSVIEYPFDREFS QRSAEEFVNSILVDWLGASAVVTGFDFHFGKGREGGPAFLMAAGKRNGFDVTLVDAFR DEGADVVSSSRIRSLLCEGDVAGAAGQLGYRFTLESEVIGGQKLGRTLGYPTANMALS PETELKAGIYAVRFRRPDGAIYDGVASFGYRPTVTDNGAALLETYVFDFSGDLYGEVC SVSFFGHLRDELKFDGLDPLVAQIRRDEEEARAMLSGVRPLSELDAKIAF" misc_feature 638996..639925 /gene="ribF" /locus_tag="AGROH133_04230" /note="bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627" /db_xref="CDD:180171" misc_feature 639047..639589 /gene="ribF" /locus_tag="AGROH133_04230" /note="FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064" /db_xref="CDD:185679" misc_feature order(639059..639070,639077..639079,639086..639088, 639368..639370,639458..639460,639485..639493) /gene="ribF" /locus_tag="AGROH133_04230" /note="active site" /db_xref="CDD:185679" misc_feature 639548..639922 /gene="ribF" /locus_tag="AGROH133_04230" /note="Riboflavin kinase; Region: Flavokinase; pfam01687" /db_xref="CDD:190069" gene 640138..640239 /locus_tag="AGROH133_04231" /db_xref="GeneID:10266386" CDS 640138..640239 /locus_tag="AGROH133_04231" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277933.1" /db_xref="GI:325292069" /db_xref="GeneID:10266386" /translation="MALVMAFDMALSVFALFEIETARPTRRATTVQL" gene 640236..643139 /gene="ileS" /locus_tag="AGROH133_04232" /db_xref="GeneID:10266387" CDS 640236..643139 /gene="ileS" /locus_tag="AGROH133_04232" /EC_number="6.1.1.5" /note="IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme" /codon_start=1 /transl_table=11 /product="Isoleucyl-tRNA synthetase" /protein_id="YP_004277934.1" /db_xref="GI:325292070" /db_xref="GeneID:10266387" /translation="MSDTAEKFDYSSTLYLPQTDFPMRAGLPQKEPETVKRWQEMGLY KKLRASAAGREKFVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGFDANYVPGWD CHGLPIEWKIEEAYRAKGKNKDEVPVNEFRKECREFAAGWIKVQSEEFKRLGIEGDFE NPYTTMNFHAEARIAGELLKIAKSGQLYRGSKPIMWSVVERTALAEAEVEYHDVESDM IWVKFPVKDAAPALSGVSVVIWTTTPWTIPGNRAIAFSSRVEYGLFEVESAQNDFGPQ PGEKLIFARKLADEAAAKAKVTFKFVRDVKAEELAAITCAHPLASLGYDFPVPLLDGD HVTDDAGTGFVHTAPSHGREDFDVWTAHQRELEARGVSPAIPFPVGDDGFYTEDAPGF GPSAEGGAARVMDDNGKKGDANERVIKALIAANNLFARGRLKHSYPHSWRSKKPVIFR NTPQWFVYMDKELGDGTTLRSRSLDAIDQTRFVPASGQNRLRAMIEGRPDWVLSRQRS WGVPIAVFADEQGEVLVDEAVNARILEAFEAEGADAWFAEGAKERFLGNDHDHAKWQQ VMDILDVWFDSGCTHTFTLEDRPDMKWPADVYLEGSDQHRGWFHSSLLESCATRGRAP YNAVVTHGFTMDEQGRKQSKSLGNVVAPQDVMKESGADILRLWVMTTDYWEDQRLGKA IIQTNIDAYRKLRNTVRWMLGTLAHDKGEEIAYADLPELEKLVLHRLSELDKVVRDGY DAFDFKKIARALIDFANVELSAFYFDIRKDTLYCDAPSSLKRRASLSVIAKLFDCLVT WLAPMLPFTTEEAWLSRYPDAESVHLAQFPEIPAEWNNDALEAKWEKIRKVRTVVTGA LEVERREKRIGSSLEAAPIVHIADADLLAALSGQDFAEICITSAISVIGDEGPADGFR LPEVAKVVVEQKLAEGAKCARSWRITTDVGSDPDYPEVSARDAAALRELAALG" misc_feature 640236..643094 /gene="ileS" /locus_tag="AGROH133_04232" /note="isoleucyl-tRNA synthetase; Provisional; Region: ileS; PRK13804" /db_xref="CDD:184337" misc_feature 640398..>640838 /gene="ileS" /locus_tag="AGROH133_04232" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature 640446..640457 /gene="ileS" /locus_tag="AGROH133_04232" /note="active site" /db_xref="CDD:173912" misc_feature 640446..640457 /gene="ileS" /locus_tag="AGROH133_04232" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature order(640446..640448,640455..640457) /gene="ileS" /locus_tag="AGROH133_04232" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature <641478..642272 /gene="ileS" /locus_tag="AGROH133_04232" /note="catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818" /db_xref="CDD:173909" misc_feature order(641703..641705,641955..641957,641964..641966, 642033..642047,642051..642053,642057..642059, 642126..642140,642150..642167,642261..642263) /gene="ileS" /locus_tag="AGROH133_04232" /note="active site" /db_xref="CDD:173909" misc_feature 642156..642170 /gene="ileS" /locus_tag="AGROH133_04232" /note="KMSKS motif; other site" /db_xref="CDD:173909" misc_feature 642270..642797 /gene="ileS" /locus_tag="AGROH133_04232" /note="Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_BEm; cd07960" /db_xref="CDD:153414" misc_feature order(642279..642281,642291..642293,642300..642302, 642312..642314,642321..642323,642330..642335, 642471..642473,642480..642485,642492..642497, 642504..642506,642519..642521,642531..642533, 642540..642542,642786..642788,642795..642797) /gene="ileS" /locus_tag="AGROH133_04232" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153414" misc_feature order(642321..642323,642330..642332) /gene="ileS" /locus_tag="AGROH133_04232" /note="anticodon binding site; other site" /db_xref="CDD:153414" gene 643102..643998 /locus_tag="AGROH133_04233" /db_xref="GeneID:10266388" CDS 643102..643998 /locus_tag="AGROH133_04233" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277935.1" /db_xref="GI:325292071" /db_xref="GeneID:10266388" /translation="MRRHCASLPRWDDLKLLRIVPVEKSISSFGPMREENGRMNCALA LHPVHLPENGRICTAMRATACRKTMSGAMGRTAGRVFMKTMKAFGQDNAQGLSMFRTV AGITAIGVLLSACTSPTYGTGKTAAEQLVDDLGNATSITGNDQEKRNLKYSPRPGLVV PAQSRAEQLTTPQQNMASRENNPQWVESPEETRERLRDEADANKNNPHYRSPLLAGNG TAGQMTESQKWEAFRKAKADAQGGSVVNAQRKFLTDPPQEYRSVPQDQLTDLGEPEQK KEKRRKKEAAMANTGKPWWNPF" gene complement(644051..644509) /gene="codA" /locus_tag="AGROH133_04234" /db_xref="GeneID:10266389" CDS complement(644051..644509) /gene="codA" /locus_tag="AGROH133_04234" /EC_number="3.5.4.1" /note="Cytidine and deoxycytidylate deaminase zinc-binding region; Cytosine/adenosine deaminases" /codon_start=1 /transl_table=11 /product="cytidine and deoxycytidylate deaminase" /protein_id="YP_004277936.1" /db_xref="GI:325292072" /db_xref="GeneID:10266389" /translation="MAERTHFMELALAEARAAGERQEVPIGAVLVMDGRVIARSGNRT RELNDVTAHAEIAVIRMACEALEQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGA EDPKGGAVHSGVRFFSQPTCHHAPDVYSGLAESESAEILRKFFREKRLDE" misc_feature complement(644180..644440) /gene="codA" /locus_tag="AGROH133_04234" /note="Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285" /db_xref="CDD:29828" misc_feature complement(order(644252..644254,644261..644263, 644345..644353,644384..644386,644432..644434)) /gene="codA" /locus_tag="AGROH133_04234" /note="nucleoside/Zn binding site; other site" /db_xref="CDD:29828" misc_feature complement(order(644231..644236,644243..644248, 644255..644260,644330..644332,644342..644344, 644357..644359)) /gene="codA" /locus_tag="AGROH133_04234" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29828" misc_feature complement(order(644252..644254,644261..644266, 644345..644353)) /gene="codA" /locus_tag="AGROH133_04234" /note="catalytic motif [active]" /db_xref="CDD:29828" gene 644581..646557 /gene="rluB" /locus_tag="AGROH133_04235" /db_xref="GeneID:10266390" CDS 644581..646557 /gene="rluB" /locus_tag="AGROH133_04235" /EC_number="4.2.1.70" /note="16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases" /codon_start=1 /transl_table=11 /product="ribosomal large subunit pseudouridine synthase B" /protein_id="YP_004277937.1" /db_xref="GI:325292073" /db_xref="GeneID:10266390" /translation="MTFKDKPKRDGGKTFSRDKKPKGPGKPAAEREKKPVEAKAAPVQ EAVMGTKPERISKIMARAGVASRRDIERMIMEGRVSLNGVKLDTPVMNATLSDKIEVD GMPIRGAERTRLWLYHKPAGLVTTNSDPEGRPTVFDNLPGELPRVLSIGRLDINTEGL LLLTNDGGLSRVLELPTTGWLRRYRVRAHGEVDQAALDKLKEGIAVDGVLYGAIDATL DRTQGHNVWITMGLREGKNREIKNVLGALGLEVNRLIRISYGPFQLGDLPEGKVLEVR GRMLRDQLGPRLIEQSGANFDAPIYDAPVADDEEENTPKRAPRSEWAKSDAPEGKPRF DRAAGKPEDRREKALGRLDTKRGDKPAGKFGGKPAGKFGAKTRGEEDGEERRPARPPA GTSRTANVWMAPGAKPTRDGKERKFSARAEAESLFKKPSAQAEARRNVVRHADSEGEW IRSDSPREEEGGRGRGDGPRGGKSFGDRGGKSFGDRPFRDKPREAGDRPRGDGPRGEK SFGDRTARGGKPFGDRPFRDKPREEGDRPRSDRPRGEKSFGDRTARGEKPFGERPFRD KPREDGDRPRGDRPFGDKPRGAKSGGKPGGRPASGKPSFGKPGERGERSGFSGKGKGP GGGSGPGGGKPGGKGPGGKPSGGRGMTRNADRRR" misc_feature 644731..645456 /gene="rluB" /locus_tag="AGROH133_04235" /note="16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187" /db_xref="CDD:31380" misc_feature 644737..>644901 /gene="rluB" /locus_tag="AGROH133_04235" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature order(644740..644742,644773..644778,644782..644787, 644791..644796,644803..644808,644812..644814, 644833..644856,644860..644862) /gene="rluB" /locus_tag="AGROH133_04235" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature 644917..645405 /gene="rluB" /locus_tag="AGROH133_04235" /note="PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of...; Region: PseudoU_synth; cl00130" /db_xref="CDD:193668" misc_feature order(645031..645042,645301..645303) /gene="rluB" /locus_tag="AGROH133_04235" /note="active site" /db_xref="CDD:73252" gene 646538..647095 /locus_tag="AGROH133_04236" /db_xref="GeneID:10266391" CDS 646538..647095 /locus_tag="AGROH133_04236" /EC_number="2.1.1.-" /note="Conserved hypothetical protein CHP00095; N6-adenine-specific methylase" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_004277938.1" /db_xref="GI:325292074" /db_xref="GeneID:10266391" /translation="MRIVGGEFRGRNLAAPKTNSIRPTIDRTRESLFNILSHAYPESL DGTRVLDVFAGTGAVGLEALSRGCRVALFVENGVEGRGLLWENIDALGLHGRARILRR DATKLGGVNNIEPFDLLFADPPYGQGHGEKAFAAAHAGGWLAPGALAILEERGDVVVN VEPVFKPLESRIFGDTKMHFYRYEP" misc_feature 646538..647089 /locus_tag="AGROH133_04236" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene 647285..648211 /locus_tag="AGROH133_04237" /db_xref="GeneID:10266392" CDS 647285..648211 /locus_tag="AGROH133_04237" /note="Patatin-like phospholipase; Predicted esterase of the alpha-beta hydrolase superfamily" /codon_start=1 /transl_table=11 /product="patatin family protein" /protein_id="YP_004277939.1" /db_xref="GI:325292075" /db_xref="GeneID:10266392" /translation="MEQGVNDSVTMVHAGQEAIDASRESGHEPTFGLALGGGGARGIC HINVIEAFDELGIRPVALSGSSIGSIIAAGMAAGMSGKEIREYTLELMGRKGSVANRL WSLGPASMRHAVDGFRLGQFNLELILHALMPQALPKDFSELAIPLKVVTTDYYAQTEV VVETGEIIQALAASAAIPALFMPVRVNGRIMIDGGIFNPVPYEHLMDQADIIVGIDVV GGPEGDGTTMPNRLDSLFGASQLMMQAAIALKLRLRPPHIFLRPPVHRFGVLDFLKSE EVLNASAGIKDDLKRQIEMQVELFHRGQGVEA" misc_feature 647411..648208 /locus_tag="AGROH133_04237" /note="Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]; Region: RssA; COG1752" /db_xref="CDD:31938" misc_feature 647417..647935 /locus_tag="AGROH133_04237" /note="Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396" /db_xref="CDD:196212" misc_feature 647474..647488 /locus_tag="AGROH133_04237" /note="nucleophile elbow; other site" /db_xref="CDD:132836" gene complement(648254..650083) /gene="kefB" /locus_tag="AGROH133_04238" /db_xref="GeneID:10266393" CDS complement(648254..650083) /gene="kefB" /locus_tag="AGROH133_04238" /note="Kef-type K+ transport systems, NAD- binding component" /codon_start=1 /transl_table=11 /product="glutathione-regulated potassium-efflux system protein" /protein_id="YP_004277940.1" /db_xref="GI:325292076" /db_xref="GeneID:10266393" /translation="MTEHDALFSEPLLLLAGAVIAASIFRKLGLGTVLGYLVAGIVIG PFLHLVTDAKDIFNVSELGVVFLLFIIGLELKPSRIWQMRRDILGLGLAQVLVTGSVL ALIAWWAGLIDARGSLVAGFGLALSSTAFALQILEDDGDMNTRHGNRSFSILLFQDLA IVPLLALVTILSNRPDVPTDSMAYDLVASVVAVAGMVLAGRYLLTPMFQIIARTGARE VMIAAALFVVIGAAAIMEAVGLSMGMGALLAGLMLSESSYRHELEADIEPFRGLFLAL FFMAVGMSLHINIVYEHILLILIAVPAMMAVKAAVIYGLCRIAGSSRYASSRIALLLA QGGEFGFVLFSTAAASRLFPQATASILVAIVTLSMALTPLLAVVSRRLTAEDADEDTL DEDFDGAGADVLMIGFSRFGQIASQILLAGGRDVTVIDSSADRVRQASRFGFRIFFGD GTRKDVLIAAGIERADLVAVCTHKKEVTDRIIDMIQSEFPSVRIYARSYDRIHSLDLR KKGVEYEIRETLESGLLFGRRILEGLDMDGERALAISDDIRERDEERLQLQAVEGLAA GRQMLHNKPVREVKPEPLMKPKNKVEKREEEEDEDEGEIAVTH" misc_feature complement(648377..650083) /gene="kefB" /locus_tag="AGROH133_04238" /note="glutathione-regulated potassium-efflux system protein KefC; Provisional; Region: PRK03562" /db_xref="CDD:179594" misc_feature complement(648941..650083) /gene="kefB" /locus_tag="AGROH133_04238" /note="Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482" /db_xref="CDD:164194" misc_feature complement(648542..648877) /gene="kefB" /locus_tag="AGROH133_04238" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 650185..651546 /gene="pmbA" /locus_tag="AGROH133_04251" /db_xref="GeneID:10266394" CDS 650185..651546 /gene="pmbA" /locus_tag="AGROH133_04251" /note="Peptidase U62, modulator of DNA gyrase; Predicted Zn-dependent proteases and their inactivated homologs" /codon_start=1 /transl_table=11 /product="PmbA/TldD related protein" /protein_id="YP_004277941.1" /db_xref="GI:325292077" /db_xref="GeneID:10266394" /translation="MKGQLMSSEIDSSKLLDRASELVDLARAAGADEADAVVVRSRSQ SVGVRLGKVESTESSESDDFSLRVFVGRRVASVSANPGFDLKTLAERAVAMAKVSPED PFACLADKERLATSYDDLELFDATEVSTDQLREAALASEEAALAVKGVSNSSGAGASS GMGGLVLATSHGFSGSYMGSRFSRSVSVIAGEGTKMERDYDFDSRLYYADLDAAEEIG RRAGEKVVRRVGPRQVDTGSNITVVFDPRIARGFVGAIAGAINGASVARKTSFLRDRM GQQVLKKGLYLTDDPQIVRGPSSRPFDGEGVRGEKMTMIEDGVLKHWFLSTSAARELG LETNGRGVRGGTSVSPSSTNLALEPGDISPEDLLRDVGTGFYVTELIGHGANMLTGEY SCGASGFWIENGEKSFAVSEVTIASNLKDMFMRVTPANDIDRKYGVAAPTLAIEGMTI AGK" misc_feature 650335..651543 /gene="pmbA" /locus_tag="AGROH133_04251" /note="Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]; Region: TldD; cl00398" /db_xref="CDD:193802" gene 651640..652446 /locus_tag="AGROH133_04252" /db_xref="GeneID:10266395" CDS 651640..652446 /locus_tag="AGROH133_04252" /EC_number="3.1.3.25" /note="Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family" /codon_start=1 /transl_table=11 /product="inositol monophosphate family protein" /protein_id="YP_004277942.1" /db_xref="GI:325292078" /db_xref="GeneID:10266395" /translation="MNDMAEARWASDLRLVLEAARKAGETALGFFRKDPEVWWKNGGL SPVSAADYAANEILETILRTARPEYGWLSEETDDDTTRLARSTVFVIDPIDGTRAFIG GRDTWCVSVAVVHEGRPVVAALVAPALAEEFTALEGGEALKNGKPISAARENTGVFHL AAPEDVITHLPEEVRSTVKRIPHVPSLAYRLAMVADGRIDGTLVKANSHEWDLAAADL ILERAGGSLVGLDGKPLMYNRREVNHPALCAAAEYALPALLKAFSHLSDG" misc_feature 651673..652374 /locus_tag="AGROH133_04252" /note="CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine...; Region: CysQ; cd01638" /db_xref="CDD:30136" misc_feature order(651790..651792,651859..651864,651913..651930, 651934..651936,652126..652128,652135..652137, 652207..652209,652243..652245,652270..652275) /locus_tag="AGROH133_04252" /note="active site" /db_xref="CDD:30136" gene 652439..652744 /locus_tag="AGROH133_04253" /db_xref="GeneID:10266396" CDS 652439..652744 /locus_tag="AGROH133_04253" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277943.1" /db_xref="GI:325292079" /db_xref="GeneID:10266396" /translation="MVDVCPEIPQMRGSQSLRKRQDMTESGKQKQLLHLVFGGELENL QDVQFRDLNALDIVGIYPDYASALTAWRSKAQMTVDNAHMRYFIVHMHRLLNPDDKN" gene 652777..652887 /locus_tag="AGROH133_04254" /db_xref="GeneID:10266397" CDS 652777..652887 /locus_tag="AGROH133_04254" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277944.1" /db_xref="GI:325292080" /db_xref="GeneID:10266397" /translation="MKASFPVIPARNGRQEIRLRENVIALLFPMIKNDAI" gene 652960..654282 /gene="kdtA" /locus_tag="AGROH133_04255" /db_xref="GeneID:10266398" CDS 652960..654282 /gene="kdtA" /locus_tag="AGROH133_04255" /EC_number="2.-.-.-" /note="catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonic-acid transferase" /protein_id="YP_004277945.1" /db_xref="GI:325292081" /db_xref="GeneID:10266398" /translation="MSSRIARFALSGYRIAGIAAYPFARPYLSYRAAKGKEDKRRRLE RFGYASAERPRGPLVWFHAASVGETLALIPLIREIRKRDIFVLLTTGTVTSAELTRTR LGDDVIHQYVPLDIKIAVNRFLAYWAPDAAITAESEIWPVTMMELERRHIPQIRVNAR LSDRSFDRWNNRHDIAESLFSKLALVVAQSDVDAERFRDLGSWPVVISGNLKGDTDPP PCDEALLEHYRRQIGPRKTWAAISTFDGEEKAAATVHAAIKSRNGQLTIIVPRHPERG DDVEAMLKGMGLTVARRSRNDVITPETDIFLGDSIGEMGLYLRLTELAFVGRSLTAEG GQNPLEPAMLGCAVLSGAHVQNFREAYQKLIRAGGGRIVRDVEMLAKAVHYLLVNDNE RYKMIDAGNRVIQDMRGALSATVKALEPYINPLTVTAKLQPRSAIGSW" misc_feature 652996..654237 /gene="kdtA" /locus_tag="AGROH133_04255" /note="3-deoxy-D-manno-octulosonic-acid transferase; Reviewed; Region: PRK05749" /db_xref="CDD:180233" misc_feature 653071..653610 /gene="kdtA" /locus_tag="AGROH133_04255" /note="3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); Region: Glycos_transf_N; pfam04413" /db_xref="CDD:190976" gene 654276..655013 /locus_tag="AGROH133_04256" /db_xref="GeneID:10266399" CDS 654276..655013 /locus_tag="AGROH133_04256" /EC_number="3.1.3.18" /note="haloacid dehalogenase-like hydrolase; Predicted phosphatases" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="YP_004277946.1" /db_xref="GI:325292082" /db_xref="GeneID:10266399" /translation="MVADMEIDATQSIAAVLFDKDGTLLGYDASWGPVNRELAAIAAK GDPVLADQLLAACGMDPVTGHVVPDSLLAAGNTAEIAAGLVAAGSPCDLVELTARLDR LFTEAADKSVPVTDLKAFFARLKARGYKLGIASSDNEKSIRQTAIRFGFESDVDFVAG YDSGYGTKPQPGMVIGFCDAIGLAPARVAVVGDNNHDLHMARNAGAGLRIAVLTGTGS RESLGADAHYCFDDITALETLLPERVV" misc_feature 654303..655004 /locus_tag="AGROH133_04256" /note="Predicted phosphatases [General function prediction only]; Region: Gph; COG0546" /db_xref="CDD:30892" misc_feature <654627..654911 /locus_tag="AGROH133_04256" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature 654678..654680 /locus_tag="AGROH133_04256" /note="motif II; other site" /db_xref="CDD:119389" gene 655178..656224 /gene="lpxK" /locus_tag="AGROH133_04257" /db_xref="GeneID:10266400" CDS 655178..656224 /gene="lpxK" /locus_tag="AGROH133_04257" /EC_number="2.7.1.130" /note="transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; Tetraacyldisaccharide-1-P 4'-kinase" /codon_start=1 /transl_table=11 /product="tetraacyldisaccharide 4'-kinase" /protein_id="YP_004277947.1" /db_xref="GI:325292083" /db_xref="GeneID:10266400" /translation="MVSEAPPFWWQKAGWQAWLLSPFSLLYGNIAGRRMRTAKRASVS VPVICIGNFTVGGAGKTPTAMAIARAATAKGLKPGFLSRGYGGTLDITTLVDPAQHRS ADVGDEPLLLAREAVTVISRKRVEGAHRLVKEGVDLIIMDDGFQSARLTLDYALVVID TVRGIGNGHLVPGGPVRAPLAEQMRHMTGLLKVGNGHAADPLVRTAAKAAKPVFVAAI KPQEPQDFRGRRVLAYAGIADPAKFFRTVEGLGGEIVLQRSFPDHHHFSDDEIADLLQ DADKENLQLVTTAKDAVRLNGHHGRAEELLWNSLVIEVDMVFDDPNAATTIIETAVRN CRARLLRENARTSF" misc_feature 655178..656194 /gene="lpxK" /locus_tag="AGROH133_04257" /note="Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]; Region: LpxK; COG1663" /db_xref="CDD:31849" misc_feature 655178..656149 /gene="lpxK" /locus_tag="AGROH133_04257" /note="Tetraacyldisaccharide-1-P 4'-kinase; Region: LpxK; cl03652" /db_xref="CDD:186597" gene complement(656710..656931) /locus_tag="AGROH133_04260" /db_xref="GeneID:10266401" CDS complement(656710..656931) /locus_tag="AGROH133_04260" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277948.1" /db_xref="GI:325292084" /db_xref="GeneID:10266401" /translation="MNRFEGGGNRIAVIEYLDGDFRIVQTGSHVICAITGKTIPVDEL RYWSVARQEAYVDASASLEAERKAGNLPA" misc_feature complement(656713..656931) /locus_tag="AGROH133_04260" /note="Uncharacterized protein conserved in bacteria (DUF2093); Region: DUF2093; cl11535" /db_xref="CDD:159523" gene complement(657082..658911) /gene="mutL" /locus_tag="AGROH133_04261" /db_xref="GeneID:10266402" CDS complement(657082..658911) /gene="mutL" /locus_tag="AGROH133_04261" /note="This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair enzyme ( ATPase)" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein" /protein_id="YP_004277949.1" /db_xref="GI:325292085" /db_xref="GeneID:10266402" /translation="MMIMAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATR IEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKISTTLDDIRTLGFRGEALPS IGSVAKLSITSRQHGAEQGSVISVTGGKVSEVRPAAANAGTIVEVRDLFFATPARLKF LKTERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEF KDNAIEIDAGREDVTLSGFAGVPTFNRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAET VPHGRYPVAVLSLTLDPAFVDVNVHPAKSDVRFRDPGLVRGLIVGAIRQALTRDGDRA ATTGASQMMNAFRPGYSPSNLRPSAAATWSAAASPSRPLAVSGNMQFAEAVQSRFSDI TMPTARAEPREVYEASASPSLEPSQYPLGAARAQLHQNYIVAQTEDGLVIVDQHAAHE RLVFEEMRNALHSRRPPSQVLLIPEIIDLPEEDCDRLMDHAAGFDALGLVIERFGPGA VAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSGRRM RPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS" misc_feature complement(657088..658902) /gene="mutL" /locus_tag="AGROH133_04261" /note="DNA mismatch repair protein; Reviewed; Region: mutL; PRK00095" /db_xref="CDD:178860" misc_feature complement(658531..658821) /gene="mutL" /locus_tag="AGROH133_04261" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(658540..658542,658546..658551, 658573..658575,658579..658581,658612..658623, 658714..658719,658723..658725,658729..658731, 658735..658737,658795..658797,658804..658806, 658816..658818)) /gene="mutL" /locus_tag="AGROH133_04261" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(658804..658806) /gene="mutL" /locus_tag="AGROH133_04261" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(658615..658617,658621..658623, 658717..658719,658723..658725)) /gene="mutL" /locus_tag="AGROH133_04261" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(657931..658296) /gene="mutL" /locus_tag="AGROH133_04261" /note="MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is...; Region: MutL_Trans; cd00782" /db_xref="CDD:48466" misc_feature complement(658000..658002) /gene="mutL" /locus_tag="AGROH133_04261" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48466" misc_feature complement(657214..657657) /gene="mutL" /locus_tag="AGROH133_04261" /note="MutL C terminal dimerisation domain; Region: MutL_C; cl07336" /db_xref="CDD:195534" gene 659262..660929 /locus_tag="AGROH133_04262" /db_xref="GeneID:10266403" CDS 659262..660929 /locus_tag="AGROH133_04262" /note="Response regulator receiver domain; FOG: PAS/PAC domain" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004277950.1" /db_xref="GI:325292086" /db_xref="GeneID:10266403" /translation="MQLSDLASSGAGVHTVMLDALCDALGAAIVVYDRNDHIVFASRK LLSFFPLQEAVIGPGARLRDYLSALYDCYLLEAESLSANARQLGREEWIGERLALHWK ERSEKTERLKGERFLRFVMNRLPSGLGISVVADISEQKKREEQWRIDLERVQLIEDIL DNLPFPVLVKDRNLAYVAVNKAACTMVETSAESILGRTVFDLHSRQVAGRIDAADRMV LDSGTPSILPERVRRANGEEVLTITRKQRVGRPGRHFLVTTMEDVTALATIDANGMPV IPSLEHVDFVASTYGKDEDRDSAGGLLKSKAVLVVSGNGRFAEAACHRLAASGMDHAV VRSEEEQRSFIDIAASAGVGIDVVVVDAQMSVTCLDIAAAHDLPVVTIEEEEIDASLL HYLAVGLKSSPKQKSSDEDWEIMTEDLPKILKTGGVCEILLVEDNRVNQIVFSQILEG LGLSWRLATSGEEALRLFEEQAPSVVLLDTTLGDIDGFEVARRMRALAGDERIPIVGV ITHAFEGDLDKCLAAGMEDMLLKPVSPDMVDAVFLRLFGKDALRLQA" misc_feature 659343..659693 /locus_tag="AGROH133_04262" /note="PAS fold; Region: PAS_7; pfam12860" /db_xref="CDD:193334" misc_feature 659739..660062 /locus_tag="AGROH133_04262" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature 660552..660884 /locus_tag="AGROH133_04262" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 660555..660899 /locus_tag="AGROH133_04262" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(660564..660569,660696..660698,660720..660722, 660786..660788,660843..660845,660852..660857) /locus_tag="AGROH133_04262" /note="active site" /db_xref="CDD:29071" misc_feature 660696..660698 /locus_tag="AGROH133_04262" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(660705..660710,660714..660722) /locus_tag="AGROH133_04262" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 660852..660860 /locus_tag="AGROH133_04262" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 661072..662424 /locus_tag="AGROH133_04263" /db_xref="GeneID:10266404" CDS 661072..662424 /locus_tag="AGROH133_04263" /note="EAL domain, diguanylate cyclase (GGDEF) domain; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain" /codon_start=1 /transl_table=11 /product="GGDEF family protein" /protein_id="YP_004277951.1" /db_xref="GI:325292087" /db_xref="GeneID:10266404" /translation="MKRAEPQALHVSQNELQAMAYSDPLTGLGNRYRLRDKIRMLASE RSSDPAPFTVGIANIDGFKPINDLFGVQAGDEILCQVAHRLKACIPDGAAVTRHDGDE FAFVLPLVFERTGAERIGNMIKDVLSAPYDLGDRNVRLSSSFGFAIYPFAGDDFEDLL KSAETALYRSKRRGRGQITVYSREIAQEMKRATQLEQALRNAIITDAIDVHFQPIVRL EEAKVIGFEALARWNDPDLGFVSPAVFVPLAEERGFIDALSEALLRKAAEAALFWPRE LFLSFNLSSAQLMDPGTADNILSILSRVGLDPHRLELEITETAVMTSADTAQRIISEL QGAGVRISLDDFGTGQSSLGRLRDFTFDKVKIDRAFVSRISSDRPSEHIIKAIVAMCE GLDLEVVAEGIEEQAEEEKLRALGCAMGQGYFYGRPADAAATQRYLHENYREILSDIP " misc_feature 661132..661605 /locus_tag="AGROH133_04263" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(661243..661245,661372..661374) /locus_tag="AGROH133_04263" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(661258..661260,661267..661272,661282..661284, 661294..661296,661360..661362,661366..661377) /locus_tag="AGROH133_04263" /note="active site" /db_xref="CDD:143635" misc_feature order(661348..661350,661435..661437) /locus_tag="AGROH133_04263" /note="I-site; other site" /db_xref="CDD:143635" misc_feature 661660..662370 /locus_tag="AGROH133_04263" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(662519..663406) /locus_tag="AGROH133_04264" /db_xref="GeneID:10266405" CDS complement(662519..663406) /locus_tag="AGROH133_04264" /EC_number="3.1.1.17" /note="SMP-30/Gluconolaconase/LRE-like region; Gluconolactonase" /codon_start=1 /transl_table=11 /product="gluconolactonase protein" /protein_id="YP_004277952.1" /db_xref="GI:325292088" /db_xref="GeneID:10266405" /translation="MATVFPFAGRVLDETPMTLGEGPTFDPATGTAWWFNIIGRELHE LHLASGRKTVHALPFMGSALAKISDHKQLIASDDGLFLRDTATGVLTLHAELEKDMPD NRSNDGRMHPSGALWIGTMGRKAQIGAGSIYHVARGTVTKLFADVSIPNSICFSPDGA TGYYVDTKVNELMKVPLDAETGLPTGKAEVFIDTAGIDGGVDGSVCDAEGHIWNARWG MGAVDRYDADGNHIERYLVPAGQTTCPAFIGPDASRLLVTSARENLDDDAIAANPQHG KTFELGIEVKGRFEPLYRL" misc_feature complement(662624..663352) /locus_tag="AGROH133_04264" /note="SMP-30/Gluconolaconase/LRE-like region; Region: SGL; pfam08450" /db_xref="CDD:192042" gene complement(663411..664109) /gene="kdgA" /locus_tag="AGROH133_04265" /db_xref="GeneID:10266406" CDS complement(663411..664109) /gene="kdgA" /locus_tag="AGROH133_04265" /EC_number="4.1.2.21" /note="catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-keto-3-deoxy-6-phosphogluconate aldolase" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxyphosphogalactonate aldolase" /protein_id="YP_004277953.1" /db_xref="GI:325292089" /db_xref="GeneID:10266406" /translation="MERNSRRKPLTLFAIPLKDERPNMRIPFPAMKYPLIAILRGLKP EETEGVVGALIETGFRAIEIPLNSPDPFRSIEIAAKMAPADCLIGAGTVLSTKDVDAL DAAGGKLMVSPNADADVISAARVKGMVTMPGVLTPTEALVAAKAGATGLKFFPASIIG PSGINAIRTILPKDLVIAAVGGVSDKNFADYTNAGILAFGLGTSLYKPGMTAAEVRER AIVTLSAYDAAIGG" misc_feature complement(663459..664019) /gene="kdgA" /locus_tag="AGROH133_04265" /note="KDPG and KHG aldolase; Region: KDPG_aldolase; cd00452" /db_xref="CDD:188632" misc_feature complement(order(663570..663572,663648..663650, 663654..663656,663834..663836,663909..663911, 663921..663923,663996..663998)) /gene="kdgA" /locus_tag="AGROH133_04265" /note="active site" /db_xref="CDD:188632" misc_feature complement(order(663597..663602,663612..663614, 663645..663650,663675..663677,663687..663689, 663693..663704,663762..663773,663828..663830, 663834..663836,663909..663911)) /gene="kdgA" /locus_tag="AGROH133_04265" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:188632" misc_feature complement(663654..663656) /gene="kdgA" /locus_tag="AGROH133_04265" /note="catalytic residue [active]" /db_xref="CDD:188632" gene complement(664118..665032) /gene="dgoK" /locus_tag="AGROH133_04266" /db_xref="GeneID:10266407" CDS complement(664118..665032) /gene="dgoK" /locus_tag="AGROH133_04266" /EC_number="2.7.1.58" /codon_start=1 /transl_table=11 /product="2-keto-3-deoxy-galactonokinase" /protein_id="YP_004277954.1" /db_xref="GI:325292090" /db_xref="GeneID:10266407" /translation="MSEPAFIAVDWGTTSFRLWLLSRSGAVLAERRSAEGMTTAMRTG FTEVLQSHLDAIGAPEKLPVLICGMAGARQGWVEAGYIDVPASLSAVLDGAVRVPGQE RDVRILPGLAQRDKNAPDVMRGEETQLLGALSSAGGGRKLVCMPGTHSKWVTVDGSDV TGFATFMTGELFEVISKQTILSHAVAEAEAFTGEHEVFRAAVRDIYANPQLATNRLFT LRSGQLLHGLTATDAKAKLSGIMIGLEIAGAHSSVRRDTPVVLIGSGALGALYEGAFA ALEIQYTVIDADEAVRRGLLAAANAIWS" misc_feature complement(664124..665032) /gene="dgoK" /locus_tag="AGROH133_04266" /note="2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]; Region: DgoK; COG3734" /db_xref="CDD:33529" misc_feature complement(664133..665005) /gene="dgoK" /locus_tag="AGROH133_04266" /note="2-keto-3-deoxy-galactonokinase; Region: DGOK; pfam05035" /db_xref="CDD:147294" gene complement(665032..665835) /gene="fabG" /locus_tag="AGROH133_04267" /db_xref="GeneID:10266408" CDS complement(665032..665835) /gene="fabG" /locus_tag="AGROH133_04267" /EC_number="1.1.-.-" /note="3-oxoacyl-(acyl carrier protein) reductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="3-oxoacyl-acyl carrier protein reductase" /protein_id="YP_004277955.1" /db_xref="GI:325292091" /db_xref="GeneID:10266408" /translation="MEQSSPSLDETMSMMQAHFPDLKDAGVLVTGGGSGIGASLVEAF AAQGARVAFIDIAEEPSVALVARLAHAARHPVHFFKTDLRDIAATRQSVEAAAAATGG IKVLVNNAAWDDRHEIDTVTEAYWDANQAVNLKQMFFTVQAALPHLRQAQDAAIINFS SISFLLNMGELPSYAAAKAGIIGLTKSLAGRLGPENIRVNTLLPGMIVTERQKELWLT DDDVTSTTARQCLKRTLVAADLVGPCLFLASSASSAITAQSIIVDGGLL" misc_feature complement(665095..665715) /gene="fabG" /locus_tag="AGROH133_04267" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature complement(665035..665712) /gene="fabG" /locus_tag="AGROH133_04267" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(order(665206..665211,665215..665226, 665302..665304,665314..665316,665353..665361, 665440..665442,665503..665511,665587..665595, 665665..665673)) /gene="fabG" /locus_tag="AGROH133_04267" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature complement(order(665302..665304,665314..665316, 665353..665355,665437..665439)) /gene="fabG" /locus_tag="AGROH133_04267" /note="active site" /db_xref="CDD:187544" gene 665917..666756 /gene="kdgR" /locus_tag="AGROH133_04268" /db_xref="GeneID:10266409" CDS 665917..666756 /gene="kdgR" /locus_tag="AGROH133_04268" /note="transcriptional regulator (IclR family); Transcriptional regulator" /codon_start=1 /transl_table=11 /product="Pectin degradation repressor protein kdgR" /protein_id="YP_004277956.1" /db_xref="GI:325292092" /db_xref="GeneID:10266409" /translation="MPDHKNPNDSEHEVVPALERKKESVTGTLGKAVSLLELIALAEK PMRFTDVVEACGQPRGTVHRQLAHLVAEGLVDHVADQTYVVGLRLLQLAAKAWSGNDL RSVAAPHLAALQEATQESVHLAVLNGGQVTYLDKMEGKHTLRMHSQVGKTSPAYCTGV GKAALSMLSPDELAALAAELDFHRFTQNTIVTPQMLAQDVAAIRSNGYGFDLQEHEIG IHCVAAPVRAPGRNFLAAISVTGPAYRVDVEQLRKWGPLVRETADQISAELACRLSPV ANG" misc_feature 665995..666723 /gene="kdgR" /locus_tag="AGROH133_04268" /note="Transcriptional regulator [Transcription]; Region: IclR; COG1414" /db_xref="CDD:31604" misc_feature 665998..666255 /gene="kdgR" /locus_tag="AGROH133_04268" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 666340..666720 /gene="kdgR" /locus_tag="AGROH133_04268" /note="Bacterial transcriptional regulator; Region: IclR; pfam01614" /db_xref="CDD:144993" gene 666965..667705 /locus_tag="AGROH133_04270" /db_xref="GeneID:10266410" CDS 666965..667705 /locus_tag="AGROH133_04270" /note="Bacterial regulatory proteins, luxR family; DNA-binding HTH domain-containing proteins" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LuxR family" /protein_id="YP_004277957.1" /db_xref="GI:325292093" /db_xref="GeneID:10266410" /translation="MQKTETAAVQSIGVDCVREIAGLNTQFDIFRFLKRLTEAWGFKA FMVLDLSAEMASELSQCTIITSWPAELLQRYDEEGMLQRSLVMAQLKKSTTPFSVSLD FLVSGDENAPKKPVIGLFERFDMINSVWFPVHDITTMRGAVSFSGNKTTLPTSQLAEL FYISSHIFARLSEIRRLDLRVPETLNEREIDCLNWTAAGKTSAEIAEIMMLSEHTINH YLNRATKKLDTVNRTQAVAKALRVGLIK" misc_feature 667037..667477 /locus_tag="AGROH133_04270" /note="Autoinducer binding domain; Region: Autoind_bind; pfam03472" /db_xref="CDD:190651" misc_feature 667517..667687 /locus_tag="AGROH133_04270" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(667520..667528,667565..667573,667595..667600, 667604..667609,667613..667627,667658..667660) /locus_tag="AGROH133_04270" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(667553..667555,667559..667561,667565..667567, 667658..667666,667673..667675,667682..667687) /locus_tag="AGROH133_04270" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 667784..669007 /gene="nrt" /locus_tag="AGROH133_04272" /db_xref="GeneID:10266411" CDS 667784..669007 /gene="nrt" /locus_tag="AGROH133_04272" /note="ABC transporter nucleotide-binding protein/ATPase; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="Nitrate transport protein" /protein_id="YP_004277958.1" /db_xref="GI:325292094" /db_xref="GeneID:10266411" /translation="MPERHRIKAGFSPTVDCAVLIAAAEKGFAADEGVELELIRKQSA RAVLAALGEDEVQIAHLPAAVPVGSAVGLDDLPADIVGVFTLSLGGSATTVSHGFFDE LYREGMKLPDPAAFGRAMARVCSARRAAGEKPPVFAIEDIVSTPFYALRYLLGSCGVL LGRDMEIVEALPKSMPALLESGKVDALCTAEPAGSAAVLGGTGRIVTTGALIWHNAPE KILAVKRPWEEENATVLEGLLRSLYRAGEWCANSANIEELTGILAAPHYIDENGEFLL PALTGYISTSQRDMQRFQEFFVTSAKAANFPWQSQALWFFSQMLRWGEVPPDRRFDAA VVEAARNAYRPDIFRKAMKPLFVPVPGANLKLEGTLREPVHVGASRSGLVLGPDCFFD GRVFDPETLDMDDEI" misc_feature 667784..668770 /gene="nrt" /locus_tag="AGROH133_04272" /note="ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715" /db_xref="CDD:31059" gene 669135..670286 /locus_tag="AGROH133_04274" /db_xref="GeneID:10266412" CDS 669135..670286 /locus_tag="AGROH133_04274" /note="Protein of unknown function DUF59; ATPases involved in chromosome partitioning" /codon_start=1 /transl_table=11 /product="mrp protein" /protein_id="YP_004277959.1" /db_xref="GI:325292095" /db_xref="GeneID:10266412" /translation="MAEVSKHQVEKALEAVIYPGSGKSIVALGMVSEIFIADAKAYFS ITVPADRAADMEPLRLSAEQAAKGVPGIAGAVVALTADRKPGTQQPAPARPAPAPARP AAATGRPAAQPGSSKVGVPGVGAIIAVASGKGGVGKSTTAVNLALGLQALGLKVGMLD ADIYGPSLPRLLKISGRPQQQEDRIIIPMENYGLKVMSMGFLVDEEAAMIWRGPMVQS ALMQMLREVAWGELDVLVLDMPPGTGDAQLTIAQQVPLAGAVIVSTPQDLALIDARKG ITMFRKVEVPLLGVVENMSYFIAPDTGARYDIFGHGGAKAEAERIGVPFLGEVPLTIS IREMSDAGTPVVAAEPDGPQAAIYRDIAEKVWARIGAGERKAAPKIVFE" misc_feature 669135..669380 /locus_tag="AGROH133_04274" /note="Domain of unknown function DUF59; Region: DUF59; cl00941" /db_xref="CDD:176589" misc_feature 669564..670127 /locus_tag="AGROH133_04274" /note="MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037" /db_xref="CDD:73300" misc_feature <670086..670229 /locus_tag="AGROH133_04274" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene 670625..671602 /gene="corA" /locus_tag="AGROH133_04275" /db_xref="GeneID:10266413" CDS 670625..671602 /gene="corA" /locus_tag="AGROH133_04275" /note="Magnesium and cobalt transport protein CorA; Mg2+ and Co2+ transporters" /codon_start=1 /transl_table=11 /product="Magnesium transport protein corA" /protein_id="YP_004277960.1" /db_xref="GI:325292096" /db_xref="GeneID:10266413" /translation="MIKAYRANCEAISLSPDDGREQIPDDIVWIDLINPTRTEEQYVE KLLGLELPTREDLKDIEPSSRLYMEDGNVFMTASLVWKADSDGPRLTDVAFILAGKRL VTIRYAEPKSFHLFTAAITRVPHEMRSGTALLLKLLETIVDRTAEILENSVAGIDNLA ADLLGSQARSKRKAPRYLEDRLTNIAAYHRLISKVRDSLASLARLQTFLSTSAQVQQD KDAREQSKSIGRDIQSLSEHASFVSGNLTFLLDASLGIINIEQNGIIKIFSIASVVFL PPTLVASVYGMNFQLMPELNWTFGYPLALVVMLMSAIIPFLFFRWKGWL" misc_feature 670625..671599 /gene="corA" /locus_tag="AGROH133_04275" /note="Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]; Region: CorA; COG0598" /db_xref="CDD:30943" misc_feature 670625..671599 /gene="corA" /locus_tag="AGROH133_04275" /note="magnesium/nickel/cobalt transporter CorA; Provisional; Region: PRK11085; cl00459" /db_xref="CDD:187900" gene 671618..673537 /gene="kup" /locus_tag="AGROH133_04278" /db_xref="GeneID:10266414" CDS 671618..673537 /gene="kup" /locus_tag="AGROH133_04278" /note="K+ potassium transporter; K+ transporter" /codon_start=1 /transl_table=11 /product="potassium uptake protein" /protein_id="YP_004277961.1" /db_xref="GI:325292097" /db_xref="GeneID:10266414" /translation="MSQIADKDFTEKPDSDDKHQNKGLYAAILGSIGVVYGDIGTSPL YAFREALKPIAYDGVTREEVIGLTSLMIWSLTIIVTFKYITLLLRADNDGEGGTLSLL ALLMKTAGTHRSVLIVLGLIGAALFLGDAMITPALSVLSAVEGLKLVTPAMDDFIIPI SVCILIGLFAIQSHGTGTVAKFFGPITAVWFLVMGVAGLIHIADDFGILYAFNPWHAV EFLANEGFYGIVVLGAVFLTITGAEALYADLGHFGRRPIQWAWFCLVFPALTLNYLGQ GALVLKDPAAMSNPFYLMFPQWAILPAVILATAATIIASQAVITGAFSLVRQAIHLGY LPRMEILFTSETNTGQIYLPAVNTILLFGVVALVLTFKSSDALATAYGISVTGAMVVT SMMFFEFVRKRWQWSIWLAIGVLAPLLLLELIFLGANLLKIHDGGYVPVLLAIAFTII MTTWQRGSKILFAKTRRSDVPLKAFVASVEKESAHAPVRVPGTAIFLTGDPDAAPAAL LHNLKHNHVLHDKNVILTIRTEDQPRVRPENRYTLTKLSDRFAVVELHFGFMETQNVT QALGYLRRTGYKFDIMSTSFYLGRRKLVPDPKSGMPGWQNRLFIALAETAADPSDYFR LPANRVVELGSHVVV" misc_feature 671657..673534 /gene="kup" /locus_tag="AGROH133_04278" /note="K+ potassium transporter; Region: K_trans; cl01227" /db_xref="CDD:194073" gene 673666..674835 /locus_tag="AGROH133_04291" /db_xref="GeneID:10266415" CDS 673666..674835 /locus_tag="AGROH133_04291" /note="Cell wall hydrolase, SleB; Cell wall hydrolyses involved in spore germination" /codon_start=1 /transl_table=11 /product="cell wall hydrolase protein involved in spore germination" /protein_id="YP_004277962.1" /db_xref="GI:325292098" /db_xref="GeneID:10266415" /translation="MRSKRVMRRRSFASLQAWTSPVVFGLAAWLVFPSIAARADLASL LAGLDNGGEQWRMVLTASPAGSVHNASLTFNDAEGEAALHGSGMTLPDGRKVAFVTNK KGDETTPDSERVNRAAKKGRIVATEIMQPPKAFTAGSVLERTSMLDIEPLKRKDRTAF VKPKRGSDVKLASFYFRREEKKADKSVSPMLAELVTNRTPDILATAYAPAEPDFARES PFDAILKKPEAGRFVPLIGADDHAWAATPLPAAVFSAAEQQCLASGIYFEARGESVKG QAAVAQVILNRVRNPAYPKTICGVVYQNKDWRNRCQFSFACDNIKDRVNSERHWKMAR EVAMATTAGKIWLTEVGSATHYHAVYVRPAWGKSMKKVGRIGLHVFYRTYGGGWS" misc_feature 674086..674832 /locus_tag="AGROH133_04291" /note="Cell wall hydrolyses involved in spore germination [Cell envelope biogenesis, outer membrane]; Region: SleB; COG3773" /db_xref="CDD:33568" misc_feature 674473..674811 /locus_tag="AGROH133_04291" /note="Cell Wall Hydrolase; Region: Hydrolase_2; pfam07486" /db_xref="CDD:191754" gene 675106..675471 /gene="atpI" /locus_tag="AGROH133_04294" /db_xref="GeneID:10266416" CDS 675106..675471 /gene="atpI" /locus_tag="AGROH133_04294" /note="ATP synthase, subunit I; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="ATP synthase, subunit I" /protein_id="YP_004277963.1" /db_xref="GI:325292099" /db_xref="GeneID:10266416" /translation="MTGNRDDSLDERRKRLAEELAKVKAEDEAEVRAETNAAESRKGF AMAVKLSSEFISAIVVGAMLGYLLDYFVGTTPWGMIVLLLLGFCAGVLNVLRSTGAVA KPPLLERADKRDEGGKDGV" misc_feature 675106..675459 /gene="atpI" /locus_tag="AGROH133_04294" /note="Putative F0F1-ATPase subunit (ATPase_gene1); Region: ATPase_gene1; cl09754" /db_xref="CDD:195904" gene 675532..676281 /gene="atpA" /locus_tag="AGROH133_04297" /db_xref="GeneID:10266417" CDS 675532..676281 /gene="atpA" /locus_tag="AGROH133_04297" /EC_number="3.6.3.14" /note="Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1-type ATP synthase, subunit a" /codon_start=1 /transl_table=11 /product="ATP synthase A chain" /protein_id="YP_004277964.1" /db_xref="GI:325292100" /db_xref="GeneID:10266417" /translation="MANDPTHQFLVQPIIPIEIGGVDFSFTNASLFMVATVAAASGFL YFATSSRGLIPTRMQSVAEMSYEFIASMLREGAGKKGMVFFPFVFSLFMFVLTANLLG MFPYFFTVTSQIIVTFALACLVIGTVVVYGFYKHGLHFFGIFAPSGVPKALLPLVASI EMISFLSRPISLSVRLFANMLAGHITLKVFAGFVASMGALGALGIGGAVLPLIMTVAM TALEFLVAFLQAYVFAVLTCMYLNDAVHGGH" misc_feature 675577..676278 /gene="atpA" /locus_tag="AGROH133_04297" /note="ATP synthase A chain; Region: ATP-synt_A; cl00413" /db_xref="CDD:185980" gene 676355..676582 /gene="atpC" /locus_tag="AGROH133_04304" /db_xref="GeneID:10266418" CDS 676355..676582 /gene="atpC" /locus_tag="AGROH133_04304" /EC_number="3.6.3.14" /note="Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K" /codon_start=1 /transl_table=11 /product="ATP synthase subunit C" /protein_id="YP_004277965.1" /db_xref="GI:325292101" /db_xref="GeneID:10266418" /translation="MEAEAAKYIGAGLACLGMAGTSLALGRIFGDYLSGALRNPSAAD SQFGRLVFGFAVTEALGIFSLLVALLLLFAV" misc_feature 676355..676546 /gene="atpC" /locus_tag="AGROH133_04304" /note="ATP synthase subunit C; Region: ATP-synt_C; cl00466" /db_xref="CDD:193830" gene 676664..677305 /gene="atpB" /locus_tag="AGROH133_04307" /db_xref="GeneID:10266419" CDS 676664..677305 /gene="atpB" /locus_tag="AGROH133_04307" /EC_number="3.6.3.14" /note="Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel; F0F1-type ATP synthase, subunit b" /codon_start=1 /transl_table=11 /product="ATP synthase B' chain" /protein_id="YP_004277966.1" /db_xref="GI:325292102" /db_xref="GeneID:10266419" /translation="MFVTEAYAQSAPTVGETHTETPAVGQPQPEATHTETGVAHGAEH GASGVFPPFDQSTYASQVLWLAITFGLFYLLMQKVIVPRVGGILENRHGRIAQDLDEA ARLKSEADAAVETYEKELAAARAKASSIGSAARDAAKAKADADRVAIEAGLAEKLAAA EKRIAGIRDQAFADVGAIAEETATAIVDQLVGAKVKDADVKAAIAAASTVKGA" misc_feature 676664..677233 /gene="atpB" /locus_tag="AGROH133_04307" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" gene 677307..677792 /gene="atpF" /locus_tag="AGROH133_04309" /db_xref="GeneID:10266420" CDS 677307..677792 /gene="atpF" /locus_tag="AGROH133_04309" /EC_number="3.6.3.14" /note="Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel; F0F1-type ATP synthase, subunit b" /codon_start=1 /transl_table=11 /product="ATP synthase B chain" /protein_id="YP_004277967.1" /db_xref="GI:325292103" /db_xref="GeneID:10266420" /translation="MAFDASFFALVGLVLFFVLIAYLKVPGMLSKSLDERAQNIQDEL AEAKRLREEAQHLLAEYQRKRKEAEAEAAGIVAAAEREAAALTAEAKQKTEEFVVRRT ALSEQKIKQAEEDAIGAVRAAAVDIAIAASEKLIAEKTTAAAKAKLFANTIGEVKSKL N" misc_feature 677364..>677639 /gene="atpF" /locus_tag="AGROH133_04309" /note="ATP synthase B/B' CF(0); Region: ATP-synt_B; cl07975" /db_xref="CDD:195650" gene complement(678011..678700) /locus_tag="AGROH133_04311" /db_xref="GeneID:10266421" CDS complement(678011..678700) /locus_tag="AGROH133_04311" /codon_start=1 /transl_table=11 /product="Permeases of the major facilitator superfamily" /protein_id="YP_004277968.1" /db_xref="GI:325292104" /db_xref="GeneID:10266421" /translation="MDFMKLLKSLEELLYELVSWLLFYPLTMWRSVVAPLSMMRYADS ELADRLEDQYDDTLSPPLFLLITLLFSQGLSASLPTIYDPTLAARELGSGSNLLIARG VIFGIYPLCMAVTLLRWKRVRITRNSLRPPFFSQCYVAAPFTFVLVLGFDFASMPLEH GLTFGLTIIALATIWYAQAQIRWLMQDLGLGIAKAGLAFSGAFLVATAAAFVLAVLIA LEAKTIYPAIT" gene complement(678838..679512) /gene="rnhB" /locus_tag="AGROH133_04318" /db_xref="GeneID:10266422" CDS complement(678838..679512) /gene="rnhB" /locus_tag="AGROH133_04318" /EC_number="3.1.26.4" /note="RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids" /codon_start=1 /transl_table=11 /product="Ribonuclease HII" /protein_id="YP_004277969.1" /db_xref="GI:325292105" /db_xref="GeneID:10266422" /translation="MCASFCRMKRRTTPDSPALFDLADTGPDFSFELEARKKGLWPVA GTDEAGRGPLAGPVVAAAVILDPDNIPGGLDDSKKLTKLKRESLFLQIMETSIVSVAS SGPGLIDTMNILRASLDAMRRAVLGLEISPALVLADGRDKPPGITCESKAVIKGDSRS LSIAAASIIAKVTRDRMMERAGVVHSSYGFEGHAGYGTPAHLRAIESHGPCPLHRMSF RPLKQD" misc_feature complement(678847..679383) /gene="rnhB" /locus_tag="AGROH133_04318" /note="bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182" /db_xref="CDD:187695" misc_feature complement(order(679000..679002,679057..679059, 679099..679101,679159..679161,679168..679176, 679363..679374)) /gene="rnhB" /locus_tag="AGROH133_04318" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:187695" misc_feature complement(order(679042..679044,679099..679101, 679369..679374)) /gene="rnhB" /locus_tag="AGROH133_04318" /note="active site" /db_xref="CDD:187695" gene complement(679828..680985) /locus_tag="AGROH133_04319" /db_xref="GeneID:10266423" CDS complement(679828..680985) /locus_tag="AGROH133_04319" /note="Elongator protein 3/MiaB/NifB, Radical SAM superfamily; DNA repair photolyase" /codon_start=1 /transl_table=11 /product="radical SAM domain protein" /protein_id="YP_004277970.1" /db_xref="GI:325292106" /db_xref="GeneID:10266423" /translation="MRDHTLSGQAAFQPSHTPDIANALADASGVRIEIDRRRGRGAGL NPGGRFEALQREVFDDGWQTLEELPEFRTEVQVEKPRSIISRNESPDIPFDRSINPYR GCEHGCIYCFARPTHSYMGLSAGLDFEAKLFAKPDAAKLLERELAKPGYKPRVIAIGT NTDPYQPIEREWRIMRQILEVLAKADHPVAIVTKSALIKRDIDILAPMAKKGLVKVGI SVTTLDRKLARSMEPRAATPEKRLEAVKALTDAGIPVAVMMAPVIPALNDHEIERILE AGKAAGATEASYVLLRLPLEVSPLFRDWLLRNYPDRYRHVMSLVRSMRDGKDYDAEFG KRMKGAGPYAWQIGRRFEMATKRLGLIRRGINLRDDIFVPPGGAGVQLSLL" misc_feature complement(679918..680790) /locus_tag="AGROH133_04319" /note="DNA repair photolyase [DNA replication, recombination, and repair]; Region: SplB; COG1533" /db_xref="CDD:31722" misc_feature complement(680053..680694) /locus_tag="AGROH133_04319" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(680110..680115,680206..680208, 680329..680331,680404..680412,680497..680502, 680509..680511,680650..680658,680662..680664, 680668..680670,680674..680676)) /locus_tag="AGROH133_04319" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" gene 681268..681792 /locus_tag="AGROH133_04320" /db_xref="GeneID:10266424" CDS 681268..681792 /locus_tag="AGROH133_04320" /note="glycosyltransferases involved in cell wall biogenesis" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277971.1" /db_xref="GI:325292107" /db_xref="GeneID:10266424" /translation="MHMLTVIMECRDQEPELAHTLSALVTGAVEGLVSDVVILDHGSR DGSSRVADAAGCRFYAQWDIEDVMRSARGHWILLVEPGARPQSGWIEEILEYVAVCAE PARFSPSRYHKRPFFSRIVRRRPPLECGYLMPKKHAVAIAKSGMGLTQLVHAQKPRRL NAELVPAWTARTSN" misc_feature 681298..>681459 /locus_tag="AGROH133_04320" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature <681511..>681699 /locus_tag="AGROH133_04320" /note="The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent...; Region: Oxidoreductase_nitrogenase; cl02775" /db_xref="CDD:194435" gene complement(681820..683253) /locus_tag="AGROH133_04321" /db_xref="GeneID:10266425" CDS complement(681820..683253) /locus_tag="AGROH133_04321" /note="FAD linked oxidases, C-terminal domain; FAD/FMN-containing dehydrogenases" /codon_start=1 /transl_table=11 /product="FAD dependent oxidoreductase" /protein_id="YP_004277972.1" /db_xref="GI:325292108" /db_xref="GeneID:10266425" /translation="MTIAAPSSDILDRFTAIVGEKNAVRDAVEMAPRLVENRGLYHGA SPLLLKPGTVEEVAAILKLASETGTPIVPQTGNTGLVGGQTPRADGTDIILSLERMNR IRDIDPVANTIVADAGCILDDIHKAASTVERMFPLSLGSQGSCRIGGNLATNAGGTAV LAYGNMRQLCLGLEVVLPTGEIWDGLRRLKKDNTGYDLRDLFIGSEGTLGVITGAVLK LFPVPLGHQVGFAGLRSTDDALKLFEMASNLCGTALTGFELMPRIGVEFTAKHIPGVR DPLQTPHDWYALIDISTSDSAETAETMMQSLLERGFSAGLVEDAVIASSEAQRQALWH MRESMSDAQKPEGGSIKHDVSVPVSKIPEFMATAEKAVLAAIPGARVCAFGHLGDGNI HYNISQPVGADKAEFIGRWRDMNEIVHGIVLSLGGSISAEHGIGQLKRDELAAIRPGI EMDLMRRIKHAFDPAGIMNPGKVITAR" misc_feature complement(681829..683217) /locus_tag="AGROH133_04321" /note="FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277" /db_xref="CDD:30625" misc_feature complement(682708..683115) /locus_tag="AGROH133_04321" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene complement(683302..684279) /locus_tag="AGROH133_04322" /db_xref="GeneID:10266426" CDS complement(683302..684279) /locus_tag="AGROH133_04322" /note="Sua5/YciO/YrdC/YwlC, yrdC domain; Putative translation factor (SUA5)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277973.1" /db_xref="GI:325292109" /db_xref="GeneID:10266426" /translation="MARHIDIENERETALQAAVEELSRGQPIALPTETVYGLAADATD PAAITRIYETKGRPQFNPLICHMADIAMAERYAVFDPVSRRLAEAFWPGPLTLVLPLK PASGIHSLATAGLDTVGIRVPQGFAGDLIRRFDKPLAAPSANSSGKISPTSAAHVEAD LGNRINLILDGGAASVGVESTIVKVEDDGRVRLLRPGGIVTEEIERITGTQLERPEKA SAAIEAPGMLASHYAPGAAVRLDATSVSANEALIRFGGIAVEGQETARTVLDLSPSGD LAEAAANLFDYLKAADASGAATIAVTTIPAHGLGEAINDRLSRAAAPRG" misc_feature complement(683653..684270) /locus_tag="AGROH133_04322" /note="yrdC domain; Region: Sua5_yciO_yrdC; cl00305" /db_xref="CDD:185891" misc_feature complement(683308..683676) /locus_tag="AGROH133_04322" /note="SUA5 domain; Region: SUA5; pfam03481" /db_xref="CDD:190656" gene complement(684344..684952) /locus_tag="AGROH133_04323" /db_xref="GeneID:10266427" CDS complement(684344..684952) /locus_tag="AGROH133_04323" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277974.1" /db_xref="GI:325292110" /db_xref="GeneID:10266427" /translation="MEKATRIRYFDAGKHSVTPIRSKTAHSDFLRTGRISRYEERWLP RERVYYSHEEVAAMTGRKLEAAADATHSRLNGFHQSIRFPKMVFHHLLDERPHLGYCH VTAAKTSFDAERHVLWSFYFANFFAELSGAENFFENIDARYSRMYFAVAINALPNKNV AIDTSFHRGGLLFQTHDPRVALKNVLMLGARSDEMRKIIKAI" gene complement(685062..685154) /locus_tag="AGROH133_04324" /db_xref="GeneID:10266428" CDS complement(685062..685154) /locus_tag="AGROH133_04324" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277975.1" /db_xref="GI:325292111" /db_xref="GeneID:10266428" /translation="MRHATMAVARHSAAKSGSYSPPETTSQYDA" gene 685285..686529 /locus_tag="AGROH133_04325" /db_xref="GeneID:10266429" CDS 685285..686529 /locus_tag="AGROH133_04325" /EC_number="1.14.12.10" /note="Aromatic-ring-hydroxylating dioxygenase, subunit alpha, Rieske [2Fe-2S] domain; Phenylpropionate dioxygenase and related ring- hydroxylating dioxygenases, large terminal subunit" /codon_start=1 /transl_table=11 /product="ring hydroxylating dioxygenase, alpha-subunit" /protein_id="YP_004277976.1" /db_xref="GI:325292112" /db_xref="GeneID:10266429" /translation="MELRDTVLRQLKNRREGFSLEQSFYTDPDYFNLDMETIWYRDWL FVGHDCEVPKAGNYITVQVGAYSVVIIRGRDGQIRALHNSCRHRGSRVCSSHKGQSAR LVCPYHQWTYDLDGKLLFARHMGDDFDKAEFGLKPVHCETVAGYVFICLADQPADFAP MRAEVESYMAPHRIWEAKVAHESTIIEKGNWKLVWENNRECYHCAANHPELCRTYPEN PSVTGTDGGASDPEIGGHWARCEAAGLPSRFKIDPKGQFRVARMPLIGEAESYTMSGK RAVRRPLSDDVSISHIGALLLFHYPTTWNHFLGDHTISFRVLPLNANETMVTTKWLVH KDAVEGVDYDLEDLTHVWNETNDQDRRIVEENAFGIRSPAYQPGPYSMEDEGGVMQFV NWYADFMVDRLSGDKARLSAVA" misc_feature 685339..686511 /locus_tag="AGROH133_04325" /note="Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638" /db_xref="CDD:34257" misc_feature 685411..685758 /locus_tag="AGROH133_04325" /note="Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469" /db_xref="CDD:58539" misc_feature order(685537..685539,685543..685548,685597..685599, 685606..685608,685612..685614) /locus_tag="AGROH133_04325" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:58539" misc_feature 685792..686481 /locus_tag="AGROH133_04325" /note="C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases; Region: RHO_alpha_C_GbcA-like; cd08884" /db_xref="CDD:176893" misc_feature order(685846..685851,685861..685863,685870..685875, 685882..685884,685888..685893,685903..685905, 686251..686256,686365..686373,686377..686391, 686422..686433,686446..686448,686455..686457, 686467..686469) /locus_tag="AGROH133_04325" /note="putative alpha subunit interface [polypeptide binding]; other site" /db_xref="CDD:176893" misc_feature order(685873..685878,685882..685887,685891..685896, 685906..685908,686161..686166,686170..686172, 686194..686196,686200..686202,686221..686223, 686227..686229,686317..686319,686326..686331, 686347..686352,686359..686361) /locus_tag="AGROH133_04325" /note="putative active site [active]" /db_xref="CDD:176893" misc_feature order(685873..685878,685882..685887,685891..685896, 685906..685908,686161..686166,686170..686172, 686194..686196,686200..686202,686221..686223, 686227..686229,686317..686319,686326..686331, 686347..686352) /locus_tag="AGROH133_04325" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:176893" misc_feature order(685891..685893,685906..685908,686359..686361) /locus_tag="AGROH133_04325" /note="Fe binding site [ion binding]; other site" /db_xref="CDD:176893" gene 686537..687619 /locus_tag="AGROH133_04326" /db_xref="GeneID:10266430" CDS 686537..687619 /locus_tag="AGROH133_04326" /note="Ferredoxin, 2Fe-2S iron-sulfur cluster binding domain; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" /codon_start=1 /transl_table=11 /product="ferredoxin I" /protein_id="YP_004277977.1" /db_xref="GI:325292113" /db_xref="GeneID:10266430" /translation="MNMAVTYKHIDEMKPWSDKLHLLECISVTPETPDVMTFLFRSED QNWFRYLPGQFVTLELPVGKEPLYRTYTLSSSPSRPYALSVTVKAQATSIGTRWMFDN LKPGMKIRALGPLGDFSYVRHPGDKYLFISAGSGVTPMMSMVRDMSDRAPQSDIAFIN CSRSPSDIVFRHELEYLARFMPKLSLGFIVENCGRTDLWSGLKGMVDKAKIALLSPDF MDRTVFCCGPEPFMAAIRSMLDASGFDMSRYHQESFSPAAPVAVGESIHTVADGEALS MVGFTLSGKEVPCQPGQTVLMTARAAGVRIGAACESGICGTCRVLKLSGEVEMNHNGG ILDDEIDEGYILACCSRPLTDVKVEA" misc_feature 686582..687436 /locus_tag="AGROH133_04326" /note="Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018" /db_xref="CDD:31221" misc_feature 686603..687298 /locus_tag="AGROH133_04326" /note="Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron...; Region: FNR_iron_sulfur_binding_1; cd06215" /db_xref="CDD:99811" misc_feature order(686699..686701,686741..686752,686792..686800, 686804..686806,686816..686824,686939..686941, 686948..686950,687290..687292,687296..687298) /locus_tag="AGROH133_04326" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99811" misc_feature order(686741..686743,686747..686752) /locus_tag="AGROH133_04326" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99811" misc_feature order(686813..686815,686822..686824,686831..686833, 686852..686854,686876..686878,686882..686884) /locus_tag="AGROH133_04326" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99811" misc_feature order(686924..686926,686936..686947,686951..686953) /locus_tag="AGROH133_04326" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99811" misc_feature order(686939..686944,687017..687025,687215..687220) /locus_tag="AGROH133_04326" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99811" misc_feature 687383..687613 /locus_tag="AGROH133_04326" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(687452..687457,687464..687466,687473..687475, 687479..687490,687575..687580) /locus_tag="AGROH133_04326" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(687464..687466,687479..687481,687488..687490, 687578..687580) /locus_tag="AGROH133_04326" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" gene 687801..688265 /locus_tag="AGROH133_04327" /db_xref="GeneID:10266431" CDS 687801..688265 /locus_tag="AGROH133_04327" /note="BA14K-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277978.1" /db_xref="GI:325292114" /db_xref="GeneID:10266431" /translation="MMNFRTTSVATAVVLFLTSFTPSQAFQAPVPMAKPAISTENVVP VQYREWDRRGDRRYGDRMYRPRPSRDGYYNGHRGYRDRRPGYRYHNGMWFPLAAFATG AIIGGAMAQPRPAYGGSHVAWCQNRWRSYRAYDNSYQPNSGPRRVCVSPYSR" misc_feature 688158..688247 /locus_tag="AGROH133_04327" /note="BA14K-like protein; Region: BA14K; pfam07886" /db_xref="CDD:149128" gene 688490..689014 /locus_tag="AGROH133_04330" /db_xref="GeneID:10266432" CDS 688490..689014 /locus_tag="AGROH133_04330" /note="BA14K-like protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277979.1" /db_xref="GI:325292115" /db_xref="GeneID:10266432" /translation="MRSYVKNILAVGLSAIVVAGAIVPAEAMPLLMAPKSVETLGNDA GKNIVNVQYWRDRDNRGGWGGERRGWYGGHRGYRDYRPGYRHHDGYWFPLAAFATGAI IGGALSQPREVYRPVPEYRPRPVYREYRPVRRAGMSQAHVNWCYGRYQSYDAYSNTFQ PYNGPRQPCYSPYS" misc_feature 688907..688999 /locus_tag="AGROH133_04330" /note="BA14K-like protein; Region: BA14K; pfam07886" /db_xref="CDD:149128" gene complement(689118..690113) /locus_tag="AGROH133_04334" /db_xref="GeneID:10266433" CDS complement(689118..690113) /locus_tag="AGROH133_04334" /note="Mg2+ transporter protein, CorA-like; Mg2+ and Co2+ transporters" /codon_start=1 /transl_table=11 /product="divalent cation transporter" /protein_id="YP_004277980.1" /db_xref="GI:325292116" /db_xref="GeneID:10266433" /translation="MDLITPAIPGLVWAYQFHPGTAPCRRLAPDAGFGEMAQCEGFFW LHLNLADQRVAGFLETIDGLDPAALASLTTHETHPSITVDEKSLYGTLVDFQREFDQE TRDFGWLHFAVSDRFIITTRLQPLRSVDRLKAAVDKNSNRYLTPAHVFEGLVAEFQRS LISLVMETTEELNAIEDLVYDSENRDERRRLAPLRRTVVRLHRHLRTVLTLMRRASAA DEDEMPDGFEDVASRLMGRLEAVDHDVYALQERARLLHEEIDSKLSSETNRHLYILSL MTAFLLPPSLVTGFFGMNTDELPFTVGTGGTMAASIFIVISVMLAWFVLKRARIL" misc_feature complement(689124..690092) /locus_tag="AGROH133_04334" /note="Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]; Region: CorA; COG0598" /db_xref="CDD:30943" misc_feature complement(689121..>689432) /locus_tag="AGROH133_04334" /note="magnesium/nickel/cobalt transporter CorA; Provisional; Region: PRK11085; cl00459" /db_xref="CDD:187900" gene 690337..692121 /gene="mmgC" /locus_tag="AGROH133_04337" /db_xref="GeneID:10266434" CDS 690337..692121 /gene="mmgC" /locus_tag="AGROH133_04337" /EC_number="1.3.99.3" /note="Acyl-CoA dehydrogenase/oxidase, middle, C & N-terminal; Acyl-CoA dehydrogenases" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase" /protein_id="YP_004277981.1" /db_xref="GI:325292117" /db_xref="GeneID:10266434" /translation="MYTAPVDDIAFTLKHVAGLQDALSRGALGDLGEDVVDAILQEAG RFATEQVAPLADIGDRQGARLSDGKVSTPDGWADLYRRWAEAGWNSLTAPEEFGGQNL PHMLNVAALEMWNSGSMAFALAPTLTMGAVEALVAHGSNDLKRIYLPKLVSGEWTGTM NLTEPHAGSDLGVLKTRAERNGDGTYRIFGQKIFITWGEHDAADNIIHLVLARLPDAP AGTRGISLFLVPKFLPEDDGTPGSRNDVFCHSLEHKLGIHGSPTCTMIFGDGKFGEEK GALGWLIGEENKGLACMFTMMNNARLAVGMQGVAICEAATQKAIEYARERTQGKAPGW QGSGMSPIIEHPDIARTLLTMKALTQGARAISFNCAHAIDMAHAAEDVAERAHWQERA ALLTPIAKSFSTDAGVDVASMGIQVHGGMGFIEETGAARYLRDARIAPIYEGTNGIQA IDLVVRKLPLSDGAQVRGFIAELREIVARTAASNRSDLGETARYLETSLADLETATDW LLERLKAGETETALAGATPYQRLFGLALTGAYLAKGALAQVDDGRGAHRASLCRFAAE NLLAETAALRDRVIAGAASLAAARAVLG" misc_feature 690433..691725 /gene="mmgC" /locus_tag="AGROH133_04337" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature 690451..691710 /gene="mmgC" /locus_tag="AGROH133_04337" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature order(690724..690726,690814..690816,690820..690822, 690916..690918,690922..690924,691657..691665, 691669..691671,691675..691677) /gene="mmgC" /locus_tag="AGROH133_04337" /note="active site" /db_xref="CDD:173838" misc_feature 691741..>691977 /gene="mmgC" /locus_tag="AGROH133_04337" /note="Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806" /db_xref="CDD:193282" gene 692132..692890 /locus_tag="AGROH133_04338" /db_xref="GeneID:10266435" CDS 692132..692890 /locus_tag="AGROH133_04338" /EC_number="4.2.1.17" /note="Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Enoyl-CoA hydratase/carnithine racemase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/isomerase" /protein_id="YP_004277982.1" /db_xref="GI:325292118" /db_xref="GeneID:10266435" /translation="MSDDHILVERVSHAPDVLTIRFNRPEKKNAITDAMYLRMAEALK AANADPDIRVVAFLGTEGCFSAGNDMADFLAFAMSGAKGKLAVLDLLKALATFEKPLV SGVDGLAIGIGTTLNLHCDLTVASNRSLFKTPFVDLALVPEAASSLLAPKLIGHQRAF ALLAMGEGFTAEQALQAGMIWKVVAPEHVESETLALATRLAAKPQQALKIARDLVRGN PADVLARIDEEARHFTAQLQSAEARAAFEAFMRR" misc_feature 692135..692848 /locus_tag="AGROH133_04338" /note="enoyl-CoA hydratase; Provisional; Region: PRK06023" /db_xref="CDD:168351" misc_feature 692159..692731 /locus_tag="AGROH133_04338" /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase...; Region: crotonase-like; cd06558" /db_xref="CDD:119339" misc_feature order(692213..692215,692219..692221,692315..692317, 692327..692341,692453..692455,692459..692467, 692531..692536,692543..692545) /locus_tag="AGROH133_04338" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(692333..692335,692465..692467) /locus_tag="AGROH133_04338" /note="oxyanion hole (OAH) forming residues; other site" /db_xref="CDD:119339" misc_feature order(692405..692407,692429..692431,692492..692503, 692537..692548,692564..692566,692570..692578, 692582..692587,692600..692605,692609..692614, 692618..692623,692630..692632,692663..692665, 692672..692674,692717..692719,692726..692731) /locus_tag="AGROH133_04338" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 692981..693295 /locus_tag="AGROH133_04339" /db_xref="GeneID:10266436" CDS 692981..693295 /locus_tag="AGROH133_04339" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277983.1" /db_xref="GI:325292119" /db_xref="GeneID:10266436" /translation="MRHFVFALTVLLSAATVAEAAATVPLPGSSNNVILAQSTQDDSP NYYSGNSRDRQRRARFVCVITPPDSANRRRPYVCPIEQGRVGGACRCSGVVGNGTVDT AW" gene complement(693296..694546) /locus_tag="AGROH133_04341" /db_xref="GeneID:10266437" CDS complement(693296..694546) /locus_tag="AGROH133_04341" /EC_number="2.1.1.-" /note="SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase" /codon_start=1 /transl_table=11 /product="RNA methyltransferase" /protein_id="YP_004277984.1" /db_xref="GI:325292120" /db_xref="GeneID:10266437" /translation="MSTQTVSIKSLGAQGDGIAHCPDGPVYVPFALPGETVAIAKVKD TGTIISIAEASTDRREPVCRHFGPEGVNGTCGGCSLQHFADQPYHAFKRELVVSALRS KGLTPPVDDLVICRPGERRRAVFAARKTEKGLLLGFSQANSHHIVAIEECPVTSPGIV ARLDAVRAIGLSLASNAEPFRMTVLETLSGLDISVEGIKSVGDKQRRTLTETVLAMRG IARVALSGEILIEPQKPIIEFGGIPVSPPAGGFTQATKQAEDAMAELVLAHVGKSKRI ADLFCGSGTFALRLARVGRVHAVEAEDKPLKALDFAARNTQGLKPVSIEKRDLFRRPL MTSEMKNYDAVVFDPPRAGAEVQCRELARSAVKKIVAVSCNPLTLARDLAILVEGGYR VTRVTPVDQFLWSPHVEAVATLEK" misc_feature complement(693317..694546) /locus_tag="AGROH133_04341" /note="SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]; Region: TrmA; COG2265" /db_xref="CDD:32446" misc_feature complement(694412..694543) /locus_tag="AGROH133_04341" /note="TRAM domain; Region: TRAM; cl01282" /db_xref="CDD:120537" misc_feature complement(693299..>693868) /locus_tag="AGROH133_04341" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(694543..695295) /gene="tlyA" /locus_tag="AGROH133_04342" /db_xref="GeneID:10266438" CDS complement(694543..695295) /gene="tlyA" /locus_tag="AGROH133_04342" /EC_number="2.1.1.-" /note="Hemolysin A, S4 domain; Predicted rRNA methylase" /codon_start=1 /transl_table=11 /product="hemolysin" /protein_id="YP_004277985.1" /db_xref="GI:325292121" /db_xref="GeneID:10266438" /translation="MSKTPENERLDQLLVSLGHFASRSRARDAIARGTVSVNGKTATK PSQTVAGNVKIAITDPAQAYVSRAALKLTAALDHFGLDPKGHECLDVGASTGGFTEVL LHRGAKHVTSIDVGHGQMHPRIENDSRVTNLEGLNARFLTTDDIDDRSVDFIVSDVSF ISIKLALAPALALAASGAQAVLLVKPQFEAGRDAISKAGLLKEPETAPAVAAELERWL VEDMGWKSLGLIPSPISGGDGNIEFLLGGEKP" misc_feature complement(694546..695277) /gene="tlyA" /locus_tag="AGROH133_04342" /note="Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: COG1189" /db_xref="CDD:31382" misc_feature complement(<695116..695274) /gene="tlyA" /locus_tag="AGROH133_04342" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature complement(order(695146..695148,695152..695175, 695194..695196,695200..695205,695212..695217, 695221..695226,695230..695235,695269..695271)) /gene="tlyA" /locus_tag="AGROH133_04342" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature complement(<694816..695031) /gene="tlyA" /locus_tag="AGROH133_04342" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(694825..694827,694876..694884, 694951..694956,695005..695025)) /gene="tlyA" /locus_tag="AGROH133_04342" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 695572..697593 /gene="mcpG" /locus_tag="AGROH133_04343" /db_xref="GeneID:10266439" CDS 695572..697593 /gene="mcpG" /locus_tag="AGROH133_04343" /note="methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="chemotaxis methyl-accepting protein" /protein_id="YP_004277986.1" /db_xref="GI:325292122" /db_xref="GeneID:10266439" /translation="MSLKNFPINIKLIVTFCVLMGVCLLASAVVFWQTLGSEHVTVQN NKANNILHAVDGATAAMLEQAVNQRGFLLFRSDSTYNDVFAQRDLMLKKLGEARALAA GQPDILKSIDDMQASATVFFRELAEPQLAARKTTEAPISEIIEIGRNQAKGQLDGFRA SAAKIKDQLNGLSASYAAQQDAAALNLKLALLGGGAVAGLLAVALIWALSRSIVTPIV GMTAAMSRLADGDMTTEVPALDRKDEVGKMAKAVLVFKEAGLEKSRLAGETERMRSAT ETERRRNEEEKAQDEAANALARDELGKGLAALAEGDLAYRIETPFASYIDPIRIDFNS AVEKLQQAMRAVGENAAAINAGASEMLSAADDLSRRTEQQAASIEETAAALEEVTTTV RDSARGAEDAGNLVQRARSGAEKSGIVVRKAVAAMREIEKSSGEIGNIIGVIDDIAFQ TNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSANAAKEIKTLIGASSQQVENGV NLVDETGKALELIVAEVEEINAHVSAIVVAAREQATGLQEINTAVNTMDQGTQQNAAM VEQQTAASHSLAREAEALNSLLGQFKVGGVRGAVAGAGGYSAPRQSSVKPVYQSAPAA PVRKAAVKPASTTARPVASPARALGQSLARAFGGKAEAPAAKDQDWTEF" misc_feature 695575..696084 /gene="mcpG" /locus_tag="AGROH133_04343" /note="CHASE3 domain; Region: CHASE3; cl05000" /db_xref="CDD:195024" misc_feature 696202..>696327 /gene="mcpG" /locus_tag="AGROH133_04343" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 696604..697347 /gene="mcpG" /locus_tag="AGROH133_04343" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 696796..697347 /gene="mcpG" /locus_tag="AGROH133_04343" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 697720..698103 /locus_tag="AGROH133_04347" /db_xref="GeneID:10266440" CDS 697720..698103 /locus_tag="AGROH133_04347" /note="Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277987.1" /db_xref="GI:325292123" /db_xref="GeneID:10266440" /translation="MAPSIKLKVLDGAYGVARLEASEAIPAWADGGGFVSITRTDDEL SIVCREDRIPGHVRSDTGWSCLKLQGPFAFDETGIVLSVIEPLSTNEIGIFVVSTFDG DHLLVKSNDLEKAFVLLKNAGHSLI" misc_feature 697720..698097 /locus_tag="AGROH133_04347" /note="Uncharacterized conserved protein [Function unknown]; Region: COG3603" /db_xref="CDD:33403" gene complement(698156..698464) /locus_tag="AGROH133_04348" /db_xref="GeneID:10266441" CDS complement(698156..698464) /locus_tag="AGROH133_04348" /note="Dimeric alpha-beta barrel; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277988.1" /db_xref="GI:325292124" /db_xref="GeneID:10266441" /translation="MHTTYLIGFKVRADQRERFLGLLNDLLDAMRHENTFVNATLHRD GENENHFLLHETWSDHQDVLDVQVHRPYRQAWHDALPELLDAPRDISVWHPMRADHAA " misc_feature complement(698168..698464) /locus_tag="AGROH133_04348" /note="Antibiotic biosynthesis monooxygenase; Region: ABM; cl10022" /db_xref="CDD:195949" gene complement(698471..699295) /locus_tag="AGROH133_04349" /db_xref="GeneID:10266442" CDS complement(698471..699295) /locus_tag="AGROH133_04349" /note="Lambda repressor-like, DNA-binding; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="YP_004277989.1" /db_xref="GI:325292125" /db_xref="GeneID:10266442" /translation="MPISSARLRGMTHHQEHVGQVLKEWRARRRLSQLDLASDAEISA RHLSFVESGRSSPSREMLARLAEQLSMPARAANRLMLAAGYAPIHSERSLDAPDMTAV RKAVETVVQGHMPFPALAVDRHWNLVLANDAIKSLLAGISEDLLHPPLNVLRLSLHPD GLSSRIVNLAEWRHHLLDRLRRQVEETGDETLSRLHAELSAYSAPAAPRHSAGADPLA IPLELRDPLSGGVLRFISTTTVFGTATDVTLSELVLECFYPADAETRAALMNGTKE" misc_feature complement(699080..699241) /locus_tag="AGROH133_04349" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:28977" misc_feature complement(order(699140..699142,699215..699217, 699227..699229)) /locus_tag="AGROH133_04349" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" misc_feature complement(order(699143..699145,699218..699220)) /locus_tag="AGROH133_04349" /note="salt bridge; other site" /db_xref="CDD:28977" misc_feature complement(order(699137..699142,699152..699154, 699161..699163,699194..699199)) /locus_tag="AGROH133_04349" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28977" gene 699373..699735 /locus_tag="AGROH133_04350" /db_xref="GeneID:10266443" CDS 699373..699735 /locus_tag="AGROH133_04350" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277990.1" /db_xref="GI:325292126" /db_xref="GeneID:10266443" /translation="MTQHLKIAETYLAVWNEENDERRQRLVSQGWAEMACYTDPLMQG EGQQGIAAMIEAARQKFPGYRFVLTGTPDGHGNFTRFSWRLISPDGEDVAGGTDVVSL NAEGQIENVVGFLDGAAS" gene complement(699777..701687) /gene="dxs" /locus_tag="AGROH133_04351" /db_xref="GeneID:10266444" CDS complement(699777..701687) /gene="dxs" /locus_tag="AGROH133_04351" /EC_number="2.2.1.7" /note="catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate" /codon_start=1 /transl_table=11 /product="Deoxyxylulose-5-phosphate synthase" /protein_id="YP_004277991.1" /db_xref="GI:325292127" /db_xref="GeneID:10266444" /translation="MPQTPLLDRVNFPSDLKEIDDRDLPELARELRDEMIDAVSSTGG HLGAGLGVVELTIAIHKVFNTPEDRLIFDVGHQCYPHKILTGRRERIRTLRQEGGLSG FTRRAESEYDDFGAGHSSTSISAGLGMAVAAGLDQSDRKVIAVIGDGSMSAGMAFEAL NNAGALDARLIVILNDNDMSIAPPTGAMSAYLARLASGRTYMGFRDFGKKLTAYLGKT IDRAITRAVTHARGYVTGGTLFEELGFYHIGPIDGHSFDHLLPVLRNVRDNQKGPVLI HVVTQKGKGYAPAEAAADKYHGVNKFDVITGAQAKAKPNAPSYTSVFAEALIQEATLD DKIIGVTAAMPNGTGLDKMAELFPARTFDVGIAEQHAVTFAAGLAADGYKPFCALYST FLQRGYDQLVHDVAIQSLPVRFPIDRAGFVGADGPTHAGSFDTTFLATLPGMVVMAAS DEAELKHMVRTAAAYDEGPISFRYPRGEGVGVEMPARGEILQIGKGRIIKEGTKVALL SFGTRLAECLAAAEDLDAAGLSTTVADARFAKPLDLDLIRQLAAHHEVLVTIEEGSVG GFGAHVLHFMASAGLLDHGPKVRTLTLPDHWVEQAKPETMYANAGLDRAGIVSTVFNA LGQRQAGVGFAG" misc_feature complement(699813..701687) /gene="dxs" /locus_tag="AGROH133_04351" /note="1-deoxy-D-xylulose-5-phosphate synthase; Provisional; Region: PRK05444" /db_xref="CDD:180086" misc_feature complement(700830..701561) /gene="dxs" /locus_tag="AGROH133_04351" /note="TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS...; Region: TPP_DXS; cd02007" /db_xref="CDD:73294" misc_feature complement(order(701151..701153,701157..701159, 701238..701249,701331..701333)) /gene="dxs" /locus_tag="AGROH133_04351" /note="TPP-binding site; other site" /db_xref="CDD:73294" misc_feature complement(700260..700724) /gene="dxs" /locus_tag="AGROH133_04351" /note="Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033" /db_xref="CDD:132916" misc_feature complement(order(700290..700292,700353..700358, 700404..700406,700413..700415,700488..700493, 700500..700502,700554..700562,700566..700571, 700578..700595,700599..700601,700608..700610, 700659..700661,700677..700679,700683..700685)) /gene="dxs" /locus_tag="AGROH133_04351" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature complement(order(700362..700364,700368..700373, 700377..700382,700407..700409,700413..700415, 700494..700496,700500..700505,700584..700592, 700599..700601,700659..700661)) /gene="dxs" /locus_tag="AGROH133_04351" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132916" misc_feature complement(order(700500..700502,700509..700511, 700584..700586,700590..700592)) /gene="dxs" /locus_tag="AGROH133_04351" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132916" misc_feature complement(699837..700208) /gene="dxs" /locus_tag="AGROH133_04351" /note="Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780" /db_xref="CDD:145764" gene complement(701795..702718) /locus_tag="AGROH133_04352" /db_xref="GeneID:10266445" CDS complement(701795..702718) /locus_tag="AGROH133_04352" /note="Cupin, RmlC-type, Pirin; Pirin-related protein" /codon_start=1 /transl_table=11 /product="Pirin-like protein" /protein_id="YP_004277992.1" /db_xref="GI:325292128" /db_xref="GeneID:10266445" /translation="MSFFPGNDPVAGDAFACDAIENLIIPRTSDIGGFAVRRALPTRQ RRLVGPFIFFDRMGPAILKAGEALDVKPHPHIGLSTVTYLFDGEIKHRDSLGTELVIR PGDINLMTAGRGIVHSERTPENLRGHPLSMSGLQTWLALPDHMEEIAPAFSHTAREDM PLIDIKGASGRVVIGDFEGLTSPVSAFTDTLYVDLTLEPGVKFPFSADHEERAIYILS GSLDVAGDVFAADQLLVFRPGDDITLQSGSGGCHIMIFGGAALNQRRYIWWNFVSSSK ERIEQAKQEWRTGRFDIVPGDEEEFVPLPEG" misc_feature complement(701843..702682) /locus_tag="AGROH133_04352" /note="Pirin-related protein [General function prediction only]; Region: COG1741" /db_xref="CDD:31927" misc_feature complement(702302..702622) /locus_tag="AGROH133_04352" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" misc_feature complement(701843..702145) /locus_tag="AGROH133_04352" /note="Pirin C-terminal cupin domain; Region: Pirin_C; pfam05726" /db_xref="CDD:147724" gene complement(702821..703075) /gene="xseB" /locus_tag="AGROH133_04353" /db_xref="GeneID:10266446" CDS complement(702821..703075) /gene="xseB" /locus_tag="AGROH133_04353" /EC_number="3.1.11.6" /note="catalyzes the bidirectional exonucleolytic cleavage of DNA; Exonuclease VII small subunit" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease small subunit" /protein_id="YP_004277993.1" /db_xref="GI:325292129" /db_xref="GeneID:10266446" /translation="MTENANTADVSGYSFEKAVAELESIVARLERGDVALDESIAIYE RGEALKKHCETLLNAAEKRIEKIRLDRAGKPQGVEPLDGE" misc_feature complement(702824..703066) /gene="xseB" /locus_tag="AGROH133_04353" /note="Exonuclease VII small subunit; Region: Exonuc_VII_S; cl00750" /db_xref="CDD:193926" gene complement(703078..704013) /locus_tag="AGROH133_04354" /db_xref="GeneID:10266447" CDS complement(703078..704013) /locus_tag="AGROH133_04354" /EC_number="3.5.1.48" /note="Histone deacetylase superfamily; Deacetylases, including yeast histone deacetylase and acetoin utilization protein" /codon_start=1 /transl_table=11 /product="histone deacetylase family protein" /protein_id="YP_004277994.1" /db_xref="GI:325292130" /db_xref="GeneID:10266447" /translation="MATRLYEHPIFLEHITPEGHPERPDRLRSLNIALEHPNFERLVR KQAPQANEDAVLLAHPEEHLLSVMRQIPEEDGEINRVEADTYVSPKSLQAALTGIGAA MVAVDDVFTGAADNVFVASRPPGHHAETAKAMGFCLFNNAAIAARHAQKVHGAERVAI IDWDVHHGNGTQDIFWNDTSVLFCSTHQMPLYPWSGDKNETGVKNNVVNAPLSPNTGS EYFREAFKSRVLPAISDFSPDLIIISAGFDAHHRDPLAQINLVGEDFDWATGRLLEMA DKYASNRVVSLLEGGYDLEGLAESAAMHILRMMKG" misc_feature complement(703087..704013) /locus_tag="AGROH133_04354" /note="Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]; Region: AcuC; COG0123" /db_xref="CDD:30472" misc_feature complement(703087..703992) /locus_tag="AGROH133_04354" /note="Histone deacetylase domain; Region: Hist_deacetyl; cl02986" /db_xref="CDD:194501" gene complement(704040..704465) /gene="bioY" /locus_tag="AGROH133_04355" /db_xref="GeneID:10266448" CDS complement(704040..704465) /gene="bioY" /locus_tag="AGROH133_04355" /note="biotin synthesis BioY protein; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="biotin transporter bioY" /protein_id="YP_004277995.1" /db_xref="GI:325292131" /db_xref="GeneID:10266448" /translation="MLGEKRGTLAVLLTILIAAIGLPVLSGGRGGLSIFTTPTTGFLI GWIAAAFVTGMLSEKLVNRGQSALTQGIGFFIASLAGGVVVLYAFGISYLALVVGLGF EKAFMGSLAFIPGDALKAVLAALAGRAVMVGYPLLPQRA" misc_feature complement(704076..>704399) /gene="bioY" /locus_tag="AGROH133_04355" /note="BioY family; Region: BioY; cl00560" /db_xref="CDD:153855" gene complement(704426..704665) /locus_tag="AGROH133_04361" /db_xref="GeneID:10266449" CDS complement(704426..704665) /locus_tag="AGROH133_04361" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277996.1" /db_xref="GI:325292132" /db_xref="GeneID:10266449" /translation="MTRAVSEAKADGKTTIRSSRAMTTRDLVLISLFSAIIIALGLLP PITLGFIPVPITAQSLGVIWPVSCWGRNAARSRFF" gene complement(704634..705239) /locus_tag="AGROH133_04362" /db_xref="GeneID:10266450" CDS complement(704634..705239) /locus_tag="AGROH133_04362" /note="Cobalt transport protein; ABC-type cobalt transport system, permease component CbiQ and related transporters" /codon_start=1 /transl_table=11 /product="cobalt ABC transporter transmembrane protein" /protein_id="YP_004277997.1" /db_xref="GI:325292133" /db_xref="GeneID:10266450" /translation="MKSLHVEGTGWLYRVSPRLKLVTLMVFSIALFLTRDLLLLGCAV VVAAAILRETRLQFREIGLRLRPVMLTILLVAAFSYLLLPVHDASVNLLRLTALALLA TAVTITVSISQFMDEIALAAAPLERLGLVKAADIGLAVGLVVRFVPEIVNRYHAVRDA HRARGLPVRLATIIVPLVIMTLKDADAIADAIDARGFRGQS" misc_feature complement(704643..705239) /locus_tag="AGROH133_04362" /note="Cobalt transport protein; Region: CbiQ; cl00463" /db_xref="CDD:186013" gene complement(705236..705916) /locus_tag="AGROH133_04366" /db_xref="GeneID:10266451" CDS complement(705236..705916) /locus_tag="AGROH133_04366" /note="ABC transporter related; ABC-type cobalt transport system, ATPase component" /codon_start=1 /transl_table=11 /product="cobalt ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004277998.1" /db_xref="GI:325292134" /db_xref="GeneID:10266451" /translation="MEIRFDTAGVAFEGRQALQPVSLTLTERRIGVIGLNGSGKTTFA RLINGLTKPTRGKVSVNGLDTVKDARAVLQAVGFIFQNPQNQIILPIIRDDVAFGLKR LGIGKTETETRVKAVLARLGIAHLEERRAHELSGGELQLAALAALLVTEPQILILDEP TNQLDLKNRAIVEKTMAALSQALVVITHDLPLLSGFDRVLVFHEGELVADANPEEAVA RYLEVASR" misc_feature complement(705257..705880) /locus_tag="AGROH133_04366" /note="ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CbiO; COG1122" /db_xref="CDD:31319" misc_feature complement(705299..705874) /locus_tag="AGROH133_04366" /note="Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This...; Region: ABC_cobalt_CbiO_domain1; cd03225" /db_xref="CDD:72984" misc_feature complement(705794..705817) /locus_tag="AGROH133_04366" /note="Walker A/P-loop; other site" /db_xref="CDD:72984" misc_feature complement(order(705353..705355,705440..705445, 705674..705676,705791..705799,705803..705808)) /locus_tag="AGROH133_04366" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72984" misc_feature complement(705674..705685) /locus_tag="AGROH133_04366" /note="Q-loop/lid; other site" /db_xref="CDD:72984" misc_feature complement(705488..705517) /locus_tag="AGROH133_04366" /note="ABC transporter signature motif; other site" /db_xref="CDD:72984" misc_feature complement(705440..705457) /locus_tag="AGROH133_04366" /note="Walker B; other site" /db_xref="CDD:72984" misc_feature complement(705422..705433) /locus_tag="AGROH133_04366" /note="D-loop; other site" /db_xref="CDD:72984" misc_feature complement(705347..705367) /locus_tag="AGROH133_04366" /note="H-loop/switch region; other site" /db_xref="CDD:72984" gene 706032..707225 /locus_tag="AGROH133_04367" /db_xref="GeneID:10266452" CDS 706032..707225 /locus_tag="AGROH133_04367" /note="Protein of unknown function DUF1006; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004277999.1" /db_xref="GI:325292135" /db_xref="GeneID:10266452" /translation="MTIKVSNEAARRIFLARQGLCSPPGKALSKDGLLQLITDIGFVQ VDSIGTVERAHHQIIFSRNQTYRREHLTALLEKDRALFEHWTHDASIVPTEFYPYWKH RFRRREPIIQERWRKWHGEGFDAAFAETLERIAATGPVLARELKEEGHQSGGWWNWHP SKTALEYLWHTGKLAISGRVNFQKVYDLAERVIPGEHHESEVEHTQFVDWACRQALTR LGFATHGEIAAFFDLVTPQEARDWVKSHRDELCEVSLLASDGGAARPSYAFADFSADV ANLPEPSSRVRVLSPFDPLLRDRNRTERLFGFYYRIEVFVPERKRQYGYYVFPLLEGD RLIGRIDMKADRKRSTLDVRRLWLEPGVRASAGRLEKLDAELSRLAKFTGVESVNYLE GWRDV" misc_feature 706032..707204 /locus_tag="AGROH133_04367" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3214" /db_xref="CDD:33027" misc_feature 706041..707177 /locus_tag="AGROH133_04367" /note="Protein of unknown function (DUF1006); Region: DUF1006; pfam06224" /db_xref="CDD:191475" gene complement(707390..708490) /gene="ribA" /locus_tag="AGROH133_04368" /db_xref="GeneID:10266453" CDS complement(707390..708490) /gene="ribA" /locus_tag="AGROH133_04368" /EC_number="3.5.4.25" /note="3,4-dihydroxy-2-butanone-4-phoshate synthase/GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase" /codon_start=1 /transl_table=11 /product="3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II" /protein_id="YP_004278000.1" /db_xref="GI:325292136" /db_xref="GeneID:10266453" /translation="MAYDQKRVVDAIRAFEAGEIVVVTDDDDRENEGDLIISAVHCTP EKMALIVRHTSGIVCAPMPRDEAKRLNLNAMVAENDSAHTTAFTVSVDFKHGTTTGIS ADDRTLTVRNLANPNVGASDFTRPGHIFPLISREGGVLMRSGHTEAAVDLCRLAGLPP IGVISELVNDDGTVMRGPQVLDFAEKHGMKHVSVADLIAYRQRKETLVEMESSFTIQT PFGPAKAHTYSLPWDRMQHMAVIFGDIRDGVDIPVRLHPENVADDVFGDRQPVQHYMQ KIAEEGRGVIVYLREGSVGVGQVDGRRKARDPDEAHAQARSRENEWLEIGLGAQILKD LGISSIKLMTTRERHYVGLEGFGIKISATDIG" misc_feature complement(707411..708478) /gene="ribA" /locus_tag="AGROH133_04368" /note="bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional; Region: PRK09314" /db_xref="CDD:181775" misc_feature complement(707888..708469) /gene="ribA" /locus_tag="AGROH133_04368" /note="3,4-dihydroxy-2-butanone 4-phosphate synthase; Region: DHBP_synthase; cl00336" /db_xref="CDD:185917" misc_feature complement(707411..707872) /gene="ribA" /locus_tag="AGROH133_04368" /note="GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cl00522" /db_xref="CDD:193852" misc_feature complement(order(707582..707584,707594..707599, 707621..707623,707627..707629,707666..707668, 707675..707680,707690..707704,707708..707713, 707717..707719,707771..707773,707777..707779, 707783..707785,707804..707812,707816..707818, 707840..707860)) /gene="ribA" /locus_tag="AGROH133_04368" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:88311" misc_feature complement(order(707444..707446,707453..707461, 707522..707524,707531..707533,707567..707569, 707585..707587,707588..707590,707609..707620, 707681..707683,707708..707710,707714..707731)) /gene="ribA" /locus_tag="AGROH133_04368" /note="active site" /db_xref="CDD:88311" gene complement(708503..709600) /gene="aroC" /locus_tag="AGROH133_04369" /db_xref="GeneID:10266454" CDS complement(708503..709600) /gene="aroC" /locus_tag="AGROH133_04369" /EC_number="4.2.3.5" /note="catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis" /codon_start=1 /transl_table=11 /product="Chorismate synthase" /protein_id="YP_004278001.1" /db_xref="GI:325292137" /db_xref="GeneID:10266454" /translation="MSHNSFGHLFRVTTWGESHGPALGCVVDGCPPGIRFTLAEVQHW MDKRKPGQSRFVTQRREDDIVKVLSGVMLDEDGETMITTGTPISMLIENTDQRSKDYG EIARSFRPGHADFTYDLKYGIRDYRGGGRSSARETAARVAAGAIARKVVPSLNVRGAL VQIGKHKINRDNWDWDQVDQNPFFCPDPEMVPVWEEYLDGIRKAGSSIGAVVEVVAEG VPAGIGAPIYAKLDQDIASSLMSINAVKGVEIGEGFASAELSGEENADEMRMGNDGKP IFLSNHAGGILGGIATGEPVIARFAIKPTSSILTERQSIDTDGRNVDVRTKGRHDPCV GIRAVPIGEAMVACTVADHYLRDRGQTARLK" misc_feature complement(708542..709573) /gene="aroC" /locus_tag="AGROH133_04369" /note="Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304" /db_xref="CDD:143612" misc_feature complement(order(708566..708568,708680..708682, 708689..708700,708704..708706,708725..708733, 708737..708745,708752..708754,708815..708820, 708830..708835,708839..708844,708851..708865, 708872..708874,708878..708883,708887..708895, 708902..708907,708911..708913,708923..708931, 708935..708937,708968..708985,708998..709000, 709181..709183,709205..709210,709238..709252, 709331..709333,709337..709339,709343..709345, 709349..709354,709391..709396,709400..709405, 709502..709507,709517..709519,709523..709525, 709529..709531,709550..709570)) /gene="aroC" /locus_tag="AGROH133_04369" /note="Tetramer interface [polypeptide binding]; other site" /db_xref="CDD:143612" misc_feature complement(order(708587..708589,708599..708601, 708680..708688,708692..708697,708869..708874, 709187..709189,709196..709207,709265..709270, 709457..709459,709544..709546)) /gene="aroC" /locus_tag="AGROH133_04369" /note="Active site [active]" /db_xref="CDD:143612" misc_feature complement(order(708590..708592,708599..708601, 708608..708610,708680..708688,708692..708694, 708869..708877,709202..709204,709208..709210, 709262..709270)) /gene="aroC" /locus_tag="AGROH133_04369" /note="FMN-binding site [chemical binding]; other site" /db_xref="CDD:143612" gene 709964..710314 /locus_tag="AGROH133_04370" /db_xref="GeneID:10266455" CDS 709964..710314 /locus_tag="AGROH133_04370" /note="Protein of unknown function DUF1344" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278002.1" /db_xref="GI:325292138" /db_xref="GeneID:10266455" /translation="MSWLRAISATFERQFFMHVRFSRKFTKARSMRMMIAALLATANL LMPINSYAQSVDVEGTISKIDVNALTITLNDGKNYRVPEEFNFEGLKAGVKVVVFYTE VDGKRVVDDLEVVQ" misc_feature 710120..710302 /locus_tag="AGROH133_04370" /note="Protein of unknown function (DUF1344); Region: DUF1344; pfam07076" /db_xref="CDD:191683" gene complement(710514..711107) /gene="gpmB" /locus_tag="AGROH133_04372" /db_xref="GeneID:10266456" CDS complement(710514..711107) /gene="gpmB" /locus_tag="AGROH133_04372" /EC_number="5.4.2.1" /note="Phosphoglycerate mutase family; Broad specificity phosphatase PhoE and related phosphatases" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase" /protein_id="YP_004278003.1" /db_xref="GI:325292139" /db_xref="GeneID:10266456" /translation="MLVYVIRHGQTDWNAIRRLQGQKDIPLNDFGRAQAVGNGKVLAQ ILGDTARDFDYVASPLGRTRETMELMRGAMGLDPHAYRTDDRLVEVSFGDWEGQTLPE LKKEFPDRVKARKANKWDFIPPGQHAESYEILSWRIGAWLSSVEVPTVCVCHGGVIRS IFRLVSGMDKDEASTTQIPQDRILKVEIDRNSAEWIS" misc_feature complement(710535..711101) /gene="gpmB" /locus_tag="AGROH133_04372" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature complement(order(710643..710648,710922..710924, 711084..711089)) /gene="gpmB" /locus_tag="AGROH133_04372" /note="catalytic core [active]" /db_xref="CDD:132718" gene complement(711139..711957) /gene="fabI" /locus_tag="AGROH133_04373" /db_xref="GeneID:10266457" CDS complement(711139..711957) /gene="fabI" /locus_tag="AGROH133_04373" /EC_number="1.3.1.9" /note="Catalyzes a key regulatory step in fatty acid biosynthesis; Enoyl-[acyl-carrier-protein] reductase (NADH)" /codon_start=1 /transl_table=11 /product="enoyl-acyl carrier protein reductase" /protein_id="YP_004278004.1" /db_xref="GI:325292140" /db_xref="GeneID:10266457" /translation="MAQASGLMAGKRGIILGVANNRSIAWGIAKACADAGAEIALTWQ GDALKKRVEPLAQELGAFMAGHCDVTDLETIDAVFAGLEKHWGKIDFVVHAIAFSDKD ELTGRYLDTSRDNFNRTMDISVFSLAAVAKRAEPIMNDGGSIITLTYYGAEKVMPNYN VMGVAKAALEASVRYLAVDLGSRGIRVNAVSAGPIKTLAASGIGDFRYILKWNEYNAP LKRTVSIEEVGKSALYLLSDLSTAVTGEIHHVDSGYHTIGMKAVDAPDISVVKD" misc_feature complement(711142..711957) /gene="fabI" /locus_tag="AGROH133_04373" /note="enoyl-(acyl carrier protein) reductase; Provisional; Region: PRK08159" /db_xref="CDD:181260" misc_feature complement(711184..711930) /gene="fabI" /locus_tag="AGROH133_04373" /note="Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; Region: ENR_SDR; cd05372" /db_xref="CDD:187630" misc_feature complement(order(711358..711369,711373..711384, 711460..711462,711481..711483,711511..711519, 711592..711594,711664..711675,711751..711759, 711826..711828,711886..711891,711901..711909)) /gene="fabI" /locus_tag="AGROH133_04373" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(711184..711195,711199..711237, 711241..711243,711256..711258,711265..711270, 711277..711279,711295..711306,711322..711324, 711331..711333,711412..711417,711421..711438, 711442..711447,711454..711459,711466..711471, 711478..711483,711487..711498,711502..711507, 711553..711555,711562..711564,711574..711576, 711583..711588,711595..711600,711607..711612, 711619..711639,711733..711735,711742..711753, 711856..711858)) /gene="fabI" /locus_tag="AGROH133_04373" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(711418..711426,711430..711438, 711442..711447,711454..711459,711466..711471, 711478..711483,711490..711498,711502..711507, 711553..711555,711562..711567,711574..711576, 711583..711588,711595..711600,711607..711612, 711619..711639,711742..711753)) /gene="fabI" /locus_tag="AGROH133_04373" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(711340..711342,711349..711351, 711358..711363,711460..711462,711472..711474, 711481..711483,711511..711513,711661..711663, 711667..711669)) /gene="fabI" /locus_tag="AGROH133_04373" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(711460..711462,711472..711474, 711511..711513,711589..711591)) /gene="fabI" /locus_tag="AGROH133_04373" /note="active site" /db_xref="CDD:187630" gene complement(712089..713198) /gene="dnaJ" /locus_tag="AGROH133_04374" /db_xref="GeneID:10266458" CDS complement(712089..713198) /gene="dnaJ" /locus_tag="AGROH133_04374" /note="Molecular chaperone, heat shock protein, Hsp40, DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain" /codon_start=1 /transl_table=11 /product="DnaJ family molecular chaperone" /protein_id="YP_004278005.1" /db_xref="GI:325292141" /db_xref="GeneID:10266458" /translation="MRDPYSILGLKRDARHEDIKAAWRTKAKTVHPDANRDDPDASAR FAEVGQAYDLLKDPKKRDLYDQARKAAEKKQRGETIMQQREAAREAAERARAAEKLME ELARADARNRAQTGQKADAKPETAEDIVERIFGADAQNDPKVQQAAEAAKAAATGVKG DAPGAGETTQTSASETAAASLAANLFSALVRRFRPPQTPPEKAPDITAEATVTVTELL ERKWITVSLADEREVRFQLEPGMTDGHVVRLKGQGLKLPNIARGDLAVTLLAARDDAF SLRGFDIHTTLPISLSDAVLGCETSIRTPLGEETVTIPAWSGSDRELRLAEKGLADGK GGYGDLVIELRILLLEKPDEKVTDLMRHMREGLYL" misc_feature complement(713028..713192) /gene="dnaJ" /locus_tag="AGROH133_04374" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cd06257" /db_xref="CDD:99751" misc_feature complement(order(713049..713054,713061..713066, 713073..713075,713100..713108)) /gene="dnaJ" /locus_tag="AGROH133_04374" /note="HSP70 interaction site [polypeptide binding]; other site" /db_xref="CDD:99751" misc_feature complement(712395..712586) /gene="dnaJ" /locus_tag="AGROH133_04374" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" misc_feature complement(712122..712355) /gene="dnaJ" /locus_tag="AGROH133_04374" /note="DnaJ C terminal domain; Region: DnaJ_C; pfam01556" /db_xref="CDD:190034" gene complement(713411..713860) /locus_tag="AGROH133_04375" /db_xref="GeneID:10266459" CDS complement(713411..713860) /locus_tag="AGROH133_04375" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278006.1" /db_xref="GI:325292142" /db_xref="GeneID:10266459" /translation="MVTVIAKSNSRTKGLLSSIAEVSAIVSMLVVLSGCVSLDLFGGD KVDRSLSTASVPNQPNNNPQTDDATIRNAVTSADLTKLAEQPLPWANAATGSAGVVTT IHEDKSSGFVCRDFKTTRHSFEGVASYAGQACLSETGEWLLTRFEQK" gene 713918..714538 /gene="pdxH" /locus_tag="AGROH133_04376" /db_xref="GeneID:10266460" CDS 713918..714538 /gene="pdxH" /locus_tag="AGROH133_04376" /EC_number="1.4.3.5" /note="catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; Pyridoxamine-phosphate oxidase" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase" /protein_id="YP_004278007.1" /db_xref="GI:325292143" /db_xref="GeneID:10266460" /translation="MSETGLTSSDFTEENEPFTLFAEWLKDATASEINDPNAVALATV DENGLPNVRMVLLKDVDDRGFVFYTNFESQKGREILGQKKAAMCFHWKSLRRQVRLRG EVEIVTDAEADSYYASRPRGSRIGAWASKQSRPLEGRFALEKAVAEYTAKYAIGDIPR PSYWSGFRIRPVSIEFWHDRKFRLHDRVEFRRETPDEPWSKVRMYP" misc_feature 713963..714535 /gene="pdxH" /locus_tag="AGROH133_04376" /note="pyridoxamine 5'-phosphate oxidase; Provisional; Region: PRK05679" /db_xref="CDD:180195" misc_feature 713993..714250 /gene="pdxH" /locus_tag="AGROH133_04376" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" misc_feature 714407..714535 /gene="pdxH" /locus_tag="AGROH133_04376" /note="Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; Region: PNPOx_C; pfam10590" /db_xref="CDD:192638" gene complement(714570..715361) /locus_tag="AGROH133_04377" /db_xref="GeneID:10266461" CDS complement(714570..715361) /locus_tag="AGROH133_04377" /note="Protein of unknown function DUF81; Predicted permeases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278008.1" /db_xref="GI:325292144" /db_xref="GeneID:10266461" /translation="MQSPMPLLDFFSALITAHSPTLLAMFAGAAFLAGLARGFSGFGA ALIFIPLASAIVGPRIASVVLLVVDGVLTLGMIPPAWRMADRREVFTMAAGALVGVPV GTLLLSGGDPLTLRWIISIVVVVLLLFLVSGWRYSGRPKTPLTLFTGLVAGLFSGAAQ LGGPPIVAYWLGGALKGAFVRANVILYFAISTVISATSYFFGGLFTADVFVFFLLALP FYGAGLYAGARLHGLADEAAFRRICYGLIAISAVIGLPLFDSLLK" misc_feature complement(714606..>715109) /locus_tag="AGROH133_04377" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene 715500..715805 /locus_tag="AGROH133_04386" /db_xref="GeneID:10266462" CDS 715500..715805 /locus_tag="AGROH133_04386" /note="NTP pyrophosphohydrolase MazG-related, Rhizobiaceae-type; Predicted pyrophosphatase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278009.1" /db_xref="GI:325292145" /db_xref="GeneID:10266462" /translation="MLAVLMRQFEAASQKYAEENGIARDPDWYMLKLQEEVGEVTQAW NRLTGRGRSKGRSEEEMKLDLADETADLLGHVLLLAHYNGLDIEASIERKWRFTPSV" misc_feature 715500..715787 /locus_tag="AGROH133_04386" /note="MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345" /db_xref="CDD:193780" gene complement(716072..716746) /locus_tag="AGROH133_04387" /db_xref="GeneID:10266463" CDS complement(716072..716746) /locus_tag="AGROH133_04387" /EC_number="3.1.3.18" /note="Haloacid dehalogenase-like hydrolase; Predicted phosphatase/phosphohexomutase" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="YP_004278010.1" /db_xref="GI:325292146" /db_xref="GeneID:10266463" /translation="MLPFLPHAVVFDMDGLLIESETLYRDSFLAASDEGGHGMRVETY QKVCGSPWDVITGTIFADYGADFPIDSFRDAWLRHLAVMMAEGVALKPGVVEILDLLD RLDIRRAIATSSRHDSVTRHLGPYDLLKRFDTIVARGDYSEPKPSPMPYLTAAKRLGI DPGRCLALEDSWHGVRSASSAGMMTIMVPDVAPPTEEMREKCIAVSSDLHAVAGLLQQ APLSEA" misc_feature complement(716099..716731) /locus_tag="AGROH133_04387" /note="Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637" /db_xref="CDD:30982" misc_feature complement(716183..716479) /locus_tag="AGROH133_04387" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature complement(716411..716413) /locus_tag="AGROH133_04387" /note="motif II; other site" /db_xref="CDD:119389" gene complement(716753..717190) /locus_tag="AGROH133_04388" /db_xref="GeneID:10266464" CDS complement(716753..717190) /locus_tag="AGROH133_04388" /note="Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278011.1" /db_xref="GI:325292147" /db_xref="GeneID:10266464" /translation="MTIIRNALVPELAVSDWQKSRAFYCDLIGFHVVYERAEEGFAYL ALGDAQLMIDQIGATRTFVAENAALEFPLGRGMNLQLAVPSLLPILARLERASIDLVL PSEEKWYRRGTVEVGNRQFIVADPDGYLLRPFESLGERPFRFG" misc_feature complement(716786..717166) /locus_tag="AGROH133_04388" /note="Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm; Region: BLMA_like; cd08349" /db_xref="CDD:176697" misc_feature complement(order(716792..716794,716915..716917, 716924..716929,716942..716959,717035..717037, 717041..717049,717068..717070,717158..717166)) /locus_tag="AGROH133_04388" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176697" misc_feature complement(order(716795..716797,716801..716809, 716819..716821,716825..716827,716846..716848, 716951..716953,717026..717031,717035..717037, 717068..717070,717089..717094)) /locus_tag="AGROH133_04388" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:176697" gene complement(717466..718881) /gene="tldD" /locus_tag="AGROH133_04389" /db_xref="GeneID:10266465" CDS complement(717466..718881) /gene="tldD" /locus_tag="AGROH133_04389" /note="Peptidase U62, modulator of DNA gyrase; Predicted Zn-dependent proteases and their inactivated homologs" /codon_start=1 /transl_table=11 /product="TldD-like protein" /protein_id="YP_004278012.1" /db_xref="GI:325292148" /db_xref="GeneID:10266465" /translation="MTNDLVNLFDCDETQLRKLVAEALTGADDGELFIEHAQAESLTF DNGRLKGGSFNTDQGFGLRAVAGETVGYAHAGELSQAALKRASDAVGAVTRGYSGSYA AAPQRTNKKLYGDENPIGSPSFEEKVKLLTDIDAYLRDKDANVRQVTATISASWQVVD ILRADGHRVSDVRPMTRINISVVAGEGDRQESGSYGIGGRVGFGDFITTENWQRGADE ALRQALVNLTAVDAPAGTMDVVLGSGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGE MVAAPGVTVVDDGTIDSRRGSLTIDDEGTPSAYNVLIENGRLVGYMQDRQNARLMGAK ATGNGRRQGYAYVPMPRMTNTYMLSGDKTPEEIISSVKKGIYAVSFGGGQVDITSGKF VFGCTEAYLIENGKIGAPVKGAMLIGNGPDAMKRVSMIGNDSKLDTGIGNCGKAGQWV PVGVGQPHLRMDQITVGGTKA" misc_feature complement(717475..718800) /gene="tldD" /locus_tag="AGROH133_04389" /note="Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]; Region: TldD; cl00398" /db_xref="CDD:193802" misc_feature complement(717919..718800) /gene="tldD" /locus_tag="AGROH133_04389" /note="Putative modulator of DNA gyrase; Region: PmbA_TldD; pfam01523" /db_xref="CDD:190021" gene complement(718961..719695) /gene="ialB" /locus_tag="AGROH133_04390" /db_xref="GeneID:10266466" CDS complement(718961..719695) /gene="ialB" /locus_tag="AGROH133_04390" /note="Invasion associated locus B protein; Invasion protein B, involved in pathogenesis" /codon_start=1 /transl_table=11 /product="invasion associated locus B" /protein_id="YP_004278013.1" /db_xref="GI:325292149" /db_xref="GeneID:10266466" /translation="MVKIRRSPCWQRFCSRLEPPGTGCRTVKSGACTWQQVLFPPNSA GIEVPRLFFPDYGVKIAALIRIPEVSMRLSPLARTFLAAAGLAIIAPAAAALAQQQPP GTPKSTHGAWSVICDKPAGASEDQCALMQNVIADDRPEVGLSVVVLKTADRKSRILRI LAPLGVLLKDGMELYIDNNNIGRAYFTRCFSEGCYVEVDIDDELLKVLRAGKNAVFAL RESVDQDRVGIPIELTGFAEGYDALP" misc_feature complement(718964..>719386) /gene="ialB" /locus_tag="AGROH133_04390" /note="Invasion associated locus B (IalB) protein; Region: IalB; cl02207" /db_xref="CDD:154799" gene 719894..720790 /gene="coxB" /locus_tag="AGROH133_04391" /db_xref="GeneID:10266467" CDS 719894..720790 /gene="coxB" /locus_tag="AGROH133_04391" /EC_number="1.9.3.1" /note="Heme/copper-type cytochrome/quinol oxidases, subunit 2" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase subunit II" /protein_id="YP_004278014.1" /db_xref="GI:325292150" /db_xref="GeneID:10266467" /translation="MTNRIYAALAGMTCLLTAVGAHADQPVHWQMGMQEAATPIMHEI RWFEQYTLWFIVPVTLFVLALLIIVALKFRAAKNPVPSKTSHNTAIEVVWTLAPVLIL LFLAFPSFNLLNAQLTQPENPDLTLKATATQWLWNYEYKAAEGAEPLAFDSYLLKEQD RAAAGKEDKARYPRLLAVDNEMVVPVGKTVRLLVTAAPTDVIHAFAMPAFGVKIDAVP GRLNETWFKPEKEGLYYGQCSELCGKDHAFMPIAIRVVSEQQYNAWHAAAASDLNGAN RALMASVDGAPRTVDVAANETN" misc_feature 719963..720709 /gene="coxB" /locus_tag="AGROH133_04391" /note="cytochrome c oxidase subunit II; Provisional; Region: COX2; MTH00051" /db_xref="CDD:177126" misc_feature 719969..720229 /gene="coxB" /locus_tag="AGROH133_04391" /note="Cytochrome C oxidase subunit II, transmembrane domain; Region: COX2_TM; pfam02790" /db_xref="CDD:111663" misc_feature 720266..720661 /gene="coxB" /locus_tag="AGROH133_04391" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" gene 720808..722517 /gene="coxA" /locus_tag="AGROH133_04396" /db_xref="GeneID:10266468" CDS 720808..722517 /gene="coxA" /locus_tag="AGROH133_04396" /EC_number="1.9.3.1" /note="cytochrome-c oxidase chain I; Heme/copper-type cytochrome/quinol oxidases, subunit 1" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase subunit I" /protein_id="YP_004278015.1" /db_xref="GI:325292151" /db_xref="GeneID:10266468" /translation="MAGPSAHDDHHSHGQSAHDGHAHDDHSHDHSHKPGFFARWFLST NHKDIGTLYLIFAIMAGIIGGGLSVVMRMELQEPGIQIFHGLASMVYGFEGDAAIDGG KHMFNVFTTAHALIMIFFMVMPAMIGGFANWMIPIMIGAPDMAFPRLNNISFWLIVPA FILLLLSLFVEGPAGGYGVGGGWTMYPPLSTNGMPGPAVDLAIFSLHVAGASSILGAI NFITTILNMRAPGMTLHKMPLFAWSVLVTAFLLLLSLPVLAGGITMLLTDRNFGTAFF SPEGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVSTFSKKPVFGYLGMAYAMVA IGAVGFIVWAHHMYTVGLSLEAQRYFVFATMVIAVPTGIKIFSWIATMWGGSLTFSTP MVWAIGFIFLFTVGGVTGVQLANAGLDRSLHDTYYVVAHFHYVLSLGAVFAIFAGWYY WFPKITGYMYNEFIGKLHFWVMFVGVNLIFFPQHFLGLAGMPRRYIDYPDAYAGWNLV SSYGSYISAVAVLIFLFGVWEAFAKKRIAGNNPWGEGATTLEWQLSSPPPYHQWEQLP RIR" misc_feature 720937..722466 /gene="coxA" /locus_tag="AGROH133_04396" /note="Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of...; Region: Cyt_c_Oxidase_I; cd01663" /db_xref="CDD:29934" misc_feature order(720937..720939,721231..721233,721243..721245, 721249..721251,721270..721272,721405..721407, 721417..721419,721471..721473,721483..721485, 721543..721545,721564..721566,721573..721575, 721597..721599,721624..721632,721645..721650, 721654..721656,721684..721686,721795..721797, 721804..721806,721813..721818,721828..721830) /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/III interface [polypeptide binding]; other site" /db_xref="CDD:29934" misc_feature order(720964..720966,721201..721203,721234..721236, 721255..721257,721264..721266,721441..721446, 721462..721464,721474..721476) /gene="coxA" /locus_tag="AGROH133_04396" /note="D-pathway; other site" /db_xref="CDD:29934" misc_feature order(720982..720984,720994..720996,721003..721005, 721015..721017,721309..721314,722170..722172, 722389..722391,722398..722400) /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/VIIc interface [polypeptide binding]; other site" /db_xref="CDD:29934" misc_feature order(721024..721026,721033..721038,722194..722196, 722203..722208,722305..722307,722359..722361) /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/IV interface [polypeptide binding]; other site" /db_xref="CDD:29934" misc_feature order(721126..721128,721654..721656,721765..721767, 721774..721779,721852..721860,721867..721869, 721876..721878,721900..721902,721924..721926, 721933..721935,721954..721962,721996..721998, 722050..722055,722059..722061,722065..722079, 722269..722274,722284..722292,722317..722322) /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/II interface [polypeptide binding]; other site" /db_xref="CDD:29934" misc_feature order(721144..721146,722104..722106,722116..722118, 722242..722244,722353..722355) /gene="coxA" /locus_tag="AGROH133_04396" /note="Low-spin heme (heme a) binding site [chemical binding]; other site" /db_xref="CDD:29934" misc_feature order(721303..721305,721312..721314) /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/VIIa interface [polypeptide binding]; other site" /db_xref="CDD:29934" misc_feature order(721381..721383,721612..721623) /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/VIa interface [polypeptide binding]; other site" /db_xref="CDD:29934" misc_feature order(721543..721545,721564..721566,721684..721686, 721795..721797,721804..721806,721813..721818, 721828..721830) /gene="coxA" /locus_tag="AGROH133_04396" /note="Dimer interface; other site" /db_xref="CDD:29934" misc_feature order(721654..721656,721669..721674,722062..722064, 722074..722079,722284..722286) /gene="coxA" /locus_tag="AGROH133_04396" /note="Putative water exit pathway; other site" /db_xref="CDD:29934" misc_feature order(721693..721695,721840..721845,722098..722100) /gene="coxA" /locus_tag="AGROH133_04396" /note="Binuclear center (heme a3/CuB) [ion binding]; other site" /db_xref="CDD:29934" misc_feature order(721693..721695,721705..721707,721738..721740, 721840..721845,721918..721920,721927..721929) /gene="coxA" /locus_tag="AGROH133_04396" /note="K-pathway; other site" /db_xref="CDD:29934" misc_feature order(721768..721770,721780..721782,722461..722463) /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/Vb interface [polypeptide binding]; other site" /db_xref="CDD:29934" misc_feature order(721843..721845,722074..722079,722284..722289) /gene="coxA" /locus_tag="AGROH133_04396" /note="Putative proton exit pathway; other site" /db_xref="CDD:29934" misc_feature 721858..721860 /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/VIb interface; other site" /db_xref="CDD:29934" misc_feature 721957..721959 /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/VIc interface [polypeptide binding]; other site" /db_xref="CDD:29934" misc_feature order(722101..722103,722284..722289) /gene="coxA" /locus_tag="AGROH133_04396" /note="Electron transfer pathway; other site" /db_xref="CDD:29934" misc_feature order(722197..722199,722368..722370) /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/VIIIb interface [polypeptide binding]; other site" /db_xref="CDD:29934" misc_feature order(722305..722307,722317..722319) /gene="coxA" /locus_tag="AGROH133_04396" /note="Subunit I/VIIb interface [polypeptide binding]; other site" /db_xref="CDD:29934" gene 722900..723853 /gene="ctaB" /locus_tag="AGROH133_04409" /db_xref="GeneID:10266469" CDS 722900..723853 /gene="ctaB" /locus_tag="AGROH133_04409" /EC_number="2.5.1.-" /note="converts protoheme IX and farnesyl diphosphate to heme O; Polyprenyltransferase (cytochrome oxidase assembly factor)" /codon_start=1 /transl_table=11 /product="protoheme IX farnesyltransferase" /protein_id="YP_004278016.1" /db_xref="GI:325292152" /db_xref="GeneID:10266469" /translation="MTVIDNREMLGLESSELSEAGARDYFELLKPRVMSLVVFTAFAG LVLAPGHINPVLGLIAILCIAVGAGASGALNMWYDADIDAVMSRTAKRPIPSGRVAPG EALAFGLTLSAFSVVILGLAVNWFSAGLLAFTIFFYAVVYTMWLKRSTPQNIVIGGAA GAFPPMLGWACVTGGVSLDSVILFLIIFLWTPAHFWALALFKMRDYGSVGIPMMPNVA GERSTKNQMIVYSVLTAAVAVAPYFTGLASLGYGIFAAVLSAIFVYCSLDVRRMPDGD EKMLPAKKMFAYSVLYLFAIFSGLLADHFAPALKAVISGVF" misc_feature 722966..723832 /gene="ctaB" /locus_tag="AGROH133_04409" /note="UbiA prenyltransferase family; Region: UbiA; cl00337" /db_xref="CDD:193776" gene 723853..723984 /locus_tag="AGROH133_04419" /db_xref="GeneID:10266470" CDS 723853..723984 /locus_tag="AGROH133_04419" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278017.1" /db_xref="GI:325292153" /db_xref="GeneID:10266470" /translation="METVELSAAQKKSRRGRNVALGVLLAGLVVLFYVITIIKIGSH" gene 724027..724656 /gene="ctaG" /locus_tag="AGROH133_04421" /db_xref="GeneID:10266471" CDS 724027..724656 /gene="ctaG" /locus_tag="AGROH133_04421" /note="involved in the insertion of copper into subunit I of cytochrome C oxidase; Cytochrome oxidase assembly factor" /codon_start=1 /transl_table=11 /product="cytochrome C oxidase assembly protein" /protein_id="YP_004278018.1" /db_xref="GI:325292154" /db_xref="GeneID:10266471" /translation="MANTGANIGADKATAGTQRVSNRSILVLCLVFFCAMIGMAYAAV PLYSLFCRVTGYNGTTQRVEQYSDVILDKTINVTFDANTSNGLNWDFRPVDKLVTPKI GETVQINFKATNRSAVATTGTAVFNVTPMEAGAYFNKVECFCFTETTLQPGETLEMPV VFFIDPDIATARETKNIHTLTLSYTFYPAKTEKPVASLPVKTESGESKL" misc_feature 724078..724641 /gene="ctaG" /locus_tag="AGROH133_04421" /note="Cytochrome c oxidase assembly protein CtaG/Cox11; Region: CtaG_Cox11; cl01240" /db_xref="CDD:186396" gene 724720..725595 /gene="coxC" /locus_tag="AGROH133_04423" /db_xref="GeneID:10266472" CDS 724720..725595 /gene="coxC" /locus_tag="AGROH133_04423" /EC_number="1.9.3.1" /note="Heme/copper-type cytochrome/quinol oxidase, subunit 3" /codon_start=1 /transl_table=11 /product="cytochrome c oxidase subunit III" /protein_id="YP_004278019.1" /db_xref="GI:325292155" /db_xref="GeneID:10266472" /translation="MADTHQKNHDYHIIDPSPWPLLASIGAFILTFGGVCYMRYLSAG SFKLFGMELANPWLFYIGLVIVLYTMYAWWADTIKEANEGSHTRVVSLHLRYGMIMFI ASEVMFFVAWFWAYFDASLYPHEAIQASRLEYTGGQWPPKGIEVIDPWHLPLYNTVIL LLSGTCVTWAHHALLHNDRKGLITGLVLTVALGVLFSTVQVYEYMHAPFDFKNSIYGA TFFMATGFHGFHVFVGTVFLLVCLLRAIAGGFTPKQHFGFEAAAWYWHFVDVVWLFLF FAIYIWGGWGAPLAE" misc_feature 724780..725565 /gene="coxC" /locus_tag="AGROH133_04423" /note="Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of...; Region: Cyt_c_Oxidase_III; cd01665" /db_xref="CDD:29485" misc_feature order(724933..724935,724942..724947,724954..724956, 724963..724965,724966..724968) /gene="coxC" /locus_tag="AGROH133_04423" /note="Subunit III/VIIa interface [polypeptide binding]; other site" /db_xref="CDD:29485" misc_feature order(724936..724941,724948..724953,724960..724962, 724975..724977,725008..725013,725020..725022, 725428..725430,725449..725451,725485..725490) /gene="coxC" /locus_tag="AGROH133_04423" /note="Phospholipid binding site [chemical binding]; other site" /db_xref="CDD:29485" misc_feature order(724984..724986,724993..724998,725029..725031, 725038..725040,725050..725055,725071..725073, 725359..725364,725371..725373,725383..725385) /gene="coxC" /locus_tag="AGROH133_04423" /note="Subunit I/III interface [polypeptide binding]; other site" /db_xref="CDD:29485" misc_feature 725143..725145 /gene="coxC" /locus_tag="AGROH133_04423" /note="Subunit III/VIb interface [polypeptide binding]; other site" /db_xref="CDD:29485" misc_feature order(725167..725175,725224..725226,725302..725304, 725332..725340,725353..725361) /gene="coxC" /locus_tag="AGROH133_04423" /note="Subunit III/VIa interface; other site" /db_xref="CDD:29485" misc_feature 725260..725262 /gene="coxC" /locus_tag="AGROH133_04423" /note="Subunit III/Vb interface [polypeptide binding]; other site" /db_xref="CDD:29485" gene 725696..726082 /locus_tag="AGROH133_04431" /db_xref="GeneID:10266473" CDS 725696..726082 /locus_tag="AGROH133_04431" /note="Protein of unknown function DUF983; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278020.1" /db_xref="GI:325292156" /db_xref="GeneID:10266473" /translation="MSEPGNGGFAPVDPIKGGLKGCCPRCGNGRLFDGFLTPKPACSA CGLDYGFADAGEGPAVFVMLIVGFLVVGLALWFDQRFAPPVWVHVMLWLPFAVIVSLV LLRKMKGIMIALQYRNNASEGRLDRE" misc_feature 725699..726070 /locus_tag="AGROH133_04431" /note="Protein of unknown function (DUF983); Region: DUF983; cl02211" /db_xref="CDD:186519" gene 726093..726827 /gene="surF1" /locus_tag="AGROH133_04434" /db_xref="GeneID:10266474" CDS 726093..726827 /gene="surF1" /locus_tag="AGROH133_04434" /note="Surfeit locus 1; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="surfeit 1" /protein_id="YP_004278021.1" /db_xref="GI:325292157" /db_xref="GeneID:10266474" /translation="MKAAERRIWFAAPLVLLALAILLGLGTWQVKRLYWKEALIADIE ARRNASPATLSQIEAIAKSGDEIEYRRVNVSGVFDHARERHFFATHQGRTGYYIYTPL SLADGRILFVNRGFVPFEMKEATKRPEGQVAGEVEIKGLARAPLVAKPSSLLPDNDIA KNIFYWKDLAAMASSTDIPPNRLVNLFVDADDAPNPGGWPQGGVTLIDLPNNHLQYAI TWYGLAAALVIVAGFAYFRNGKAQGE" misc_feature 726168..726782 /gene="surF1" /locus_tag="AGROH133_04434" /note="SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring...; Region: SURF1; cd06662" /db_xref="CDD:119401" gene 726891..727937 /gene="lytB" /locus_tag="AGROH133_04437" /db_xref="GeneID:10266475" CDS 726891..727937 /gene="lytB" /locus_tag="AGROH133_04437" /EC_number="1.17.1.2" /note="catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; Penicillin tolerance protein" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-enyl diphosphate reductase" /protein_id="YP_004278022.1" /db_xref="GI:325292158" /db_xref="GeneID:10266475" /translation="MNIAVSKPPLTIRLCGPRGFCAGVDRAIQIVVLALKAYGAPVYV RHEIVHNRYVVEGLEAKGAIFVEELHEIPTEHREQPVVFSAHGVPKSVPEDAQARNLF YLDATCPLVSKVHKQAMRHQRLGRHVVLIGHAGHPEVIGTMGQLPEGTVSLVETVEDA GTYEPVDRENLGFVTQTTLSVDDTAGVISRLQERFPAIQAPAADSICYATTNRQDAVK QAAPGCDLFIVVGAPNSSNSKRLVEVALRAGAKHSVLVQRAAEIDWDAIGDIRTVGLS AGASAPEVIVDEIIEAFKARFDTTLDLAVTVEETEHFLVNRELRSIELTTDDMAFVNG NASNALPPKAATGA" misc_feature 726918..727826 /gene="lytB" /locus_tag="AGROH133_04437" /note="LytB protein; Region: LYTB; cl00507" /db_xref="CDD:193845" misc_feature 726921..727778 /gene="lytB" /locus_tag="AGROH133_04437" /note="(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming); Region: ispH_lytB; TIGR00216" /db_xref="CDD:161769" gene 728024..728998 /gene="thrB" /locus_tag="AGROH133_04438" /db_xref="GeneID:10266476" CDS 728024..728998 /gene="thrB" /locus_tag="AGROH133_04438" /EC_number="2.7.1.39" /note="catalyzes the formation of O-phospho-L-homoserine from L-homoserine; Putative homoserine kinase type II (protein kinase fold)" /codon_start=1 /transl_table=11 /product="homoserine kinase" /protein_id="YP_004278023.1" /db_xref="GI:325292159" /db_xref="GeneID:10266476" /translation="MKLAVYTDITEDDLRNFLIQYDVGSLTSYKGIAEGVENSNFLLH TTKNPLILTLYEKRVEKSDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAA LISFLEGMWLRKPEAKHCREVGKALAAMHLAGEGFEIKRPNALSVDGWKVLWDKSEDR ADEVEKGLKQEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC NDLLAYDVSICLNAWCFEKDGAYNVTKGKALLEGYQSVRPLSEAELDALPLLARGSAL RFFLTRLYDWLTTPAGALVVKKDPLEYLRKLRFHRSISHVAEYGLVGE" misc_feature 728054..728953 /gene="thrB" /locus_tag="AGROH133_04438" /note="Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and...; Region: HomoserineK_II; cd05153" /db_xref="CDD:88616" misc_feature 728105..728800 /gene="thrB" /locus_tag="AGROH133_04438" /note="Phosphotransferase enzyme family; Region: APH; pfam01636" /db_xref="CDD:190058" misc_feature order(728129..728131,728141..728143,728174..728176, 728180..728182,728267..728269,728333..728344, 728606..728608,728618..728623,728627..728629, 728657..728662,728717..728719) /gene="thrB" /locus_tag="AGROH133_04438" /note="putative active site [active]" /db_xref="CDD:88616" misc_feature order(728129..728131,728606..728608,728717..728719) /gene="thrB" /locus_tag="AGROH133_04438" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:88616" misc_feature order(728141..728143,728174..728176,728180..728182, 728267..728269,728333..728344,728606..728608, 728618..728623,728627..728629,728657..728662) /gene="thrB" /locus_tag="AGROH133_04438" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88616" gene 728995..729435 /gene="rnhA" /locus_tag="AGROH133_04439" /db_xref="GeneID:10266477" CDS 728995..729435 /gene="rnhA" /locus_tag="AGROH133_04439" /EC_number="3.1.26.4" /note="An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; Ribonuclease HI" /codon_start=1 /transl_table=11 /product="ribonuclease H" /protein_id="YP_004278024.1" /db_xref="GI:325292160" /db_xref="GeneID:10266477" /translation="MKHVDIFTDGACSGNPGPGGWGAVLRYGETEKELSGGEADTTNN RMELLAAISALNALKSPCEVDLYTDSAYVKDGITKWIFGWKKKGWKTADNKPVKNVEL WQALEAAQERHKVTLHWVKGHAGHPENERADELARKGMEPFKRR" misc_feature 729004..729417 /gene="rnhA" /locus_tag="AGROH133_04439" /note="RNase HI family found mainly in prokaryotes; Region: RNase_HI_prokaryote_like; cd09278" /db_xref="CDD:187702" misc_feature order(729019..729030,729118..729126,729133..729135, 729199..729201,729349..729351,729403..729405) /gene="rnhA" /locus_tag="AGROH133_04439" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:187702" misc_feature order(729019..729021,729133..729135,729199..729201, 729391..729393) /gene="rnhA" /locus_tag="AGROH133_04439" /note="active site" /db_xref="CDD:187702" gene 729564..729872 /locus_tag="AGROH133_04440" /db_xref="GeneID:10266478" CDS 729564..729872 /locus_tag="AGROH133_04440" /note="Stress responsive alpha-beta barrel" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278025.1" /db_xref="GI:325292161" /db_xref="GeneID:10266478" /translation="MILHCVFLRFKAATASSEKHAVFEAIAALKDVIPGIIDVKYGQN VSPEGLNGGFVDGFIVTLDSPEARDEYLAHPQHMEVGQRLVSLTDGGLAGLLVFDMNV " misc_feature 729567..729869 /locus_tag="AGROH133_04440" /note="Stress responsive A/B Barrel Domain; Region: Dabb; pfam07876" /db_xref="CDD:149121" gene complement(729887..732214) /locus_tag="AGROH133_04441" /db_xref="GeneID:10266479" CDS complement(729887..732214) /locus_tag="AGROH133_04441" /note="Quinoprotein amine dehydrogenase, beta chain-like; Predicted integral membrane proteins containing uncharacterized repeats" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278026.1" /db_xref="GI:325292162" /db_xref="GeneID:10266479" /translation="MDLVKISRGCRYFCKLKNSCFFASTFTSLFRFATPIAVAAGLTG TAYAAEQSAPKFLHNVDPIHTSNAVSISADGTIVVGYYKKNQNWSAYRWTVSTGVLED IAVLPGTKSSEAFGVNADGSVIVGTYYTDTKFRPFRWTASSSGMQELSVLAGIDNATA MSVSADGSVIVGFAMRGGSIHAVRWTGPSAIMQELGSLTPGGQSDAFGVSADGSVIVG QSFGNGSQSLAYRWTAATGTMHALGTLPGGTTSTAVAVNSDGSVVVGMANFSGAGIAG TNNEIRAFRWTEASGVMQELGVLAGSRSSLARAVSADGSVVVGQSESTSGTTGFRWTS ATGMISVKDWLLNNGVAVASDFSTATAEDVSGDGNIVVGQTKDNRAYIARVVPPTTTA DSSKDGNVHTRTPPPAATPTPTPAFPTANMPAPTTALPPTPAFLTNTAPTPVPLNTPT PSPAIDSVQAPAPASSGIIDVDQFAKTLAARPNTSLGIGHASTLLNGAHGEPMRNLLE PGRQSFGIITDAGYDNGAGTKGGFGIADIGYGIGLEGGATARLAFGGIYNDFDIDTGG NSIYKGSYIAPEISMPIAGNLFATIGGYYAPGEMSIERGYLNGGAMDYSHGKADLDTW AARLHLDWLNAATIADWRLTPYGSLTYATAKMEGYTESNGSFPASFDVTREHSTVVRA GLDGITDLTDTVRLLARAEAAYRFEEETAGASGSILGLSGFRFGGQEIDQFWMRGGLG AEFDVAGGTASLNVNVTTQGEDPAVWLRSGWKVAF" misc_feature complement(731057..732019) /locus_tag="AGROH133_04441" /note="Predicted integral membrane proteins containing uncharacterized repeats [Function unknown]; Region: COG5563" /db_xref="CDD:35122" misc_feature complement(<730157..730672) /locus_tag="AGROH133_04441" /note="Autotransporter beta-domain; Region: Autotransporter; cl02365" /db_xref="CDD:194296" gene complement(732463..732948) /locus_tag="AGROH133_04444" /db_xref="GeneID:10266480" CDS complement(732463..732948) /locus_tag="AGROH133_04444" /note="Peroxiredoxin" /codon_start=1 /transl_table=11 /product="peroxiredoxin protein" /protein_id="YP_004278027.1" /db_xref="GI:325292163" /db_xref="GeneID:10266480" /translation="MTIKIGEKLPSATFKEKTADGPVETTTDALFGGKTVVLFAVPGA FTPTCSLNHLPGYLENRDAILAKSVDDIAVVSVNDWHVMGAWAQSSGGQGKIHFLADW DAAFTKALGLDADLSGGGLGVRSKRYSMLVKDGVVTSLNVEENPGQATVSAAAAMIEQ L" misc_feature complement(732472..732936) /locus_tag="AGROH133_04444" /note="Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5...; Region: PRX5_like; cd03013" /db_xref="CDD:48562" misc_feature complement(order(732568..732570,732802..732804, 732811..732813)) /locus_tag="AGROH133_04444" /note="catalytic triad [active]" /db_xref="CDD:48562" misc_feature complement(order(732577..732579,732640..732645, 732706..732708,732712..732714,732808..732810)) /locus_tag="AGROH133_04444" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48562" gene complement(733071..733919) /locus_tag="AGROH133_04445" /db_xref="GeneID:10266481" CDS complement(733071..733919) /locus_tag="AGROH133_04445" /note="Uncharacterized protein to be involved in C-type cytochrome biogenesis" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278028.1" /db_xref="GI:325292164" /db_xref="GeneID:10266481" /translation="MSVRTFFRFSHLRLAVAFAALLGSGQVAQAEITDWARSEGGQMR VASLAMDADGVVRGVLQIEPKDGWITYWREPGEAGIPPKITLDPASGISLTSMAYPVP KLIENGDITDIGYDHAVSIPFQLKAVDAKAGGNIDLTAFIGVCQNICIPFEATFSISR GNAGDDDHEERRLLEEARETLPEAASDDFKVVDFHITPDKTMLGVQLQLPENAPKETE IFIAGPSGFAYYEPQNLVRDKRKLSFYMNIKGLPKTYQVQGNSWPILVKSGDRTMETM LNFPKP" misc_feature complement(733080..733916) /locus_tag="AGROH133_04445" /note="Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]; Region: COG4233" /db_xref="CDD:33958" gene 733947..734687 /locus_tag="AGROH133_04447" /db_xref="GeneID:10266482" CDS 733947..734687 /locus_tag="AGROH133_04447" /note="Protein of unknown function DUF179, Uncharacterized ACR, COG1678; Putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator protein" /protein_id="YP_004278029.1" /db_xref="GI:325292165" /db_xref="GeneID:10266482" /translation="MDQLRIRAVHHFRLIDRARCRILCFVEVRTPLSRSTMEFGKLEA PVSFSTLMDKRERGFFDSQFLIAMPGLDNGNFARSVVYICAHSDAGAMGFIINRPQQI TFTDILLHLKLVDSNDAIMLPNRTREFPIQCGGPVESGRGFVLHSDDYLSESSIPVSD DISLTATLDIVRAISNGRGPQKATMMLGYAGWGPGQLENEIANNGWLNCPAAEELIFD RGLDNKYERALALMGVDARMLSAEAGHA" misc_feature 734100..734684 /locus_tag="AGROH133_04447" /note="Uncharacterized ACR, COG1678; Region: DUF179; cl00731" /db_xref="CDD:186165" gene 734795..734986 /locus_tag="AGROH133_04448" /db_xref="GeneID:10266483" CDS 734795..734986 /locus_tag="AGROH133_04448" /note="CsbD-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278030.1" /db_xref="GI:325292166" /db_xref="GeneID:10266483" /translation="MGSTSDKIAGTAKEVAGKVKKNVGEATGNNELRAKGAAQETEGK VQKNVGKAKDAVKGVVDRM" misc_feature 734810..>734932 /locus_tag="AGROH133_04448" /note="CsbD-like; Region: CsbD; cl01272" /db_xref="CDD:194090" gene 735154..736260 /locus_tag="AGROH133_04449" /db_xref="GeneID:10266484" CDS 735154..736260 /locus_tag="AGROH133_04449" /note="Uncharacterised conserved protein UCP012641; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278031.1" /db_xref="GI:325292167" /db_xref="GeneID:10266484" /translation="MKLFSCASCGQPVHFDNRFCVSCGHRLAFVPERLSMEALAPAGE PNWQLVAQPERQVRFCANEVNDICNWSVPAESQNAFCPACSHNRLVPNIATDEGIEQW RGISQAQRHLFYSILRLGLPHPNRDADPVGGLVFDFLVDEVAPDGSVIPAMTGHDEGL IAIRAAEVDDATREQVRANMNEPYRTMLGHFRHEVGHFIWNKLVRDENRLEACRAVFG DEREDYAAALQRNYEQGPRPNWQETFISAYASVHPWEDFAECFAHYLHIVDTLETARA FGVAIDPDGHEEMAAEVTFDPYNARSAAQLVKAWIPLSVAINSIQRSMGEADLYPFVL APPVVSKMEFIHDLLHGRIDAMPQQQMQQFSMAQ" misc_feature 735166..736200 /locus_tag="AGROH133_04449" /note="Uncharacterized protein conserved in bacteria (DUF2248); Region: DUF2248; cl09206" /db_xref="CDD:158453" gene complement(736383..739298) /locus_tag="AGROH133_04450" /db_xref="GeneID:10266485" CDS complement(736383..739298) /locus_tag="AGROH133_04450" /note="EAL domain, GGDEF: diguanylate cyclase (GGDEF) domain; FOG: PAS/PAC domain" /codon_start=1 /transl_table=11 /product="sensory box/GGDEF family protein" /protein_id="YP_004278032.1" /db_xref="GI:325292168" /db_xref="GeneID:10266485" /translation="MTYTHSAPCLSKRLAAIALAAPFFLFFLLFSSLSYAFEPVKISR DDTALDLTATTDIYANQGEAFQVSTAPGPDGIRRRIEVRASSTDHQGDWAVFALANVS EEQLERVIVAPHFRLVNSKLFWPDLGSQRIIAITPSEGFALDRQPSPDADVFRITLNP GSVITFVAELSTPQLPQIYLWEPEAYKDTINAFTLYRGIVLGIAGLLAVLLTILFVVK GTSVLPASAALAWAVLAYICVDFGFLEKLITVTSSDQRIWRAGAEVALASSFVVFLFT YLNLNRWHAHLGYATFAWVVGLALLFGVAIFDPSVASGIARVSFALTATAGIALIIYL GFNRYDRAILLVPSWALILVWLFGSWLTVTGQLDNDIVQPALGGGLVLIVLLIGFTVI QHAFAGSAYQQGLFSDLERQSLALTGSGDTVWDWDVTRDRIVTTPDISNRLGLEPGTM HGAARNWLPRLHPDDRDRFKATLDVLLDHRKGRLNHEFRIRAEDGHFHWLQIRARPVL GSNGEIIRCVGTITDITEQKNSVERLLQDAMNDNLTGLPNRQVFLDRLQSILNLSPES DGVRPTVMAIDIDRYKLVNDTLGIAAGDNILIALTRRLRRLLKPQDTLARLGGDEFGL ILTSERDPQRVADFADAVNKAIMVPINFANREIILTASIGLVSWIDQQESAAGLLSDA ELAMYRAKRAGGNRVEPFRPAFRTSGTDRLQMESDLRRAIERKELSLAYQPIVKLDDG ALAGFEALMRWEHPKRGNIPPSEFIPIAEASGLIEPLGMFALERAATDLMDWQHSIEK MPIFISVNISSAQLLNNELYNDVRGMLTRTRCNPQQLKLELTESVVMENPEQARLVLS KLKETGISLAMDDFGTGYSSLAYLTRFPFDTIKLDKALVANTSDKRNVLLRSVIAMAR ALDMQVVAEGIETPEDAAELSRMNCHFGQSFLFGTPVSGDAALKLLRERFQPTKRAS" misc_feature complement(738750..739130) /locus_tag="AGROH133_04450" /note="7TMR-DISM extracellular 2; Region: 7TMR-DISMED2; pfam07696" /db_xref="CDD:191816" misc_feature complement(737727..738044) /locus_tag="AGROH133_04450" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature complement(order(737814..737816,737829..737831, 737910..737921,737964..737966,737982..737984, 737994..737996)) /locus_tag="AGROH133_04450" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature complement(737736..737990) /locus_tag="AGROH133_04450" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature complement(order(737787..737789,737793..737795, 737880..737885,737892..737894,737916..737918, 737928..737930)) /locus_tag="AGROH133_04450" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature complement(737205..737678) /locus_tag="AGROH133_04450" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(737439..737441,737568..737570)) /locus_tag="AGROH133_04450" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(737436..737447,737451..737453, 737517..737519,737529..737531,737541..737546, 737553..737555)) /locus_tag="AGROH133_04450" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(737376..737378,737463..737465)) /locus_tag="AGROH133_04450" /note="I-site; other site" /db_xref="CDD:143635" misc_feature complement(736434..737153) /locus_tag="AGROH133_04450" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(739295..739894) /gene="rimJ" /locus_tag="AGROH133_04460" /db_xref="GeneID:10266486" CDS complement(739295..739894) /gene="rimJ" /locus_tag="AGROH133_04460" /EC_number="2.3.1.128" /note="ribosomal-protein (S5)-alanine N-acetyltransferase; Acetyltransferases, including N-acetylases of ribosomal proteins" /codon_start=1 /transl_table=11 /product="ribosomal-protein S5-alanine N-acetyltransferase" /protein_id="YP_004278033.1" /db_xref="GI:325292169" /db_xref="GeneID:10266486" /translation="MLRFLSRHNDTPELRSANHLLRLPRYGDFKQWHVLRSESRQFLQ PWEPTWRPDELTEGSFRTRVVRNGQEFSSGTAVSFLLFEKETLLVGGITIGYIRRGAA QSCMIGYWVGERYAAQGHMSAALKLVIPYIFNGLQLHRIEAACIPENFKSIRLLENAG FQREGLLREYLKINGQWRDHTMFSLLADKQSSSGTKYDT" misc_feature complement(739331..739864) /gene="rimJ" /locus_tag="AGROH133_04460" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" misc_feature complement(739328..739786) /gene="rimJ" /locus_tag="AGROH133_04460" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(739928..741226) /locus_tag="AGROH133_04461" /db_xref="GeneID:10266487" CDS complement(739928..741226) /locus_tag="AGROH133_04461" /EC_number="3.4.99.-" /note="Insulinase (Peptidase family M16); Predicted Zn-dependent peptidases" /codon_start=1 /transl_table=11 /product="M16 family peptidase" /protein_id="YP_004278034.1" /db_xref="GI:325292170" /db_xref="GeneID:10266487" /translation="MRVNVTRLSSGLTVVTERMPHLESVALGVWIKSGSRNETTAEHG IAHLLEHMAFKGTARRTARQIAEEIENVGGEVNAATSTETTSYYARVLKDHVPLAVDI LADILTESLFDEDELEREKNVILQEIGAATDTPDDVIFDNFSGVAYRDQTIGRPILGT PETVQSFTSAQIRHYLARNYTTDRIFVVAAGAVDHQSFVKQVEERFASLPQLPVTTPV LEKAIYTGGEIRETRDLMDAQVLLGFEGKAYHARDFYCSQILANILGGGMSSRLFQEV RESRGLCYSVYAFHWGFSDTGIFGVHAATGGNDLPELMPVIVDELRKSSQTIHQEEID RARAQIRAQLLMGQESPAARAGQMARQMMLYGRPIPNEEMMERLNDITRERLTDLAGR LFFDTVPTLSAIGPLEQLPPLSDITAALSAQQPARIKANG" misc_feature complement(739988..741226) /locus_tag="AGROH133_04461" /note="Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612" /db_xref="CDD:30957" misc_feature complement(740747..741187) /locus_tag="AGROH133_04461" /note="Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675" /db_xref="CDD:189663" misc_feature complement(740207..740731) /locus_tag="AGROH133_04461" /note="Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193" /db_xref="CDD:191225" gene complement(741246..742643) /gene="thrC" /locus_tag="AGROH133_04462" /db_xref="GeneID:10266488" CDS complement(741246..742643) /gene="thrC" /locus_tag="AGROH133_04462" /EC_number="4.2.3.1" /note="catalyzes the formation of L-threonine from O-phospho-L-homoserine" /codon_start=1 /transl_table=11 /product="Threonine synthase" /protein_id="YP_004278035.1" /db_xref="GI:325292171" /db_xref="GeneID:10266488" /translation="MKYVSTRGAAPSLGFCDALLAGLGRDGGLYVPREWPSMSKKEIR NLRGKSYQDIAFEVLYRFTGGEIPADKFRAMIDDAYATFRHPAVAPLTQTGPNTFVLE LFHGTTLAFKDVAMQLLARLMDYTLAERGERATIVGATSGDTGGAAIDAFAGRERTDI FILFPNGKVSPVQQRQMTTSTASNVHALAINGNFDDCQNLVKEMFNDAKFRDGVKLSG VNSINWARIMAQVVYYFTASLSLGGPDRKISFTVPTGNFGDIFAGYVAKKMGLPIDKL VIATNDNDILARTLKTGRYEMRGVTPTTSPSMDIQISSNFERLLFEAYGRDSAAVKAS MDGLKQSGAFEIPPHALKFIKKDFRAGRATEKQVAATIRDTLEKTGYLIDPHTATGVF VAEKHEKASSPMVVLSTAHPAKFPAAVKSACAIDPALPVWLADIMNREERFDILDAEL KTVETFIGSHARAGK" misc_feature complement(741264..742643) /gene="thrC" /locus_tag="AGROH133_04462" /note="Threonine synthase [Amino acid transport and metabolism]; Region: ThrC; COG0498" /db_xref="CDD:30844" misc_feature complement(741276..742640) /gene="thrC" /locus_tag="AGROH133_04462" /note="Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants...; Region: Thr-synth_2; cd01560" /db_xref="CDD:107203" misc_feature complement(order(741417..741419,741876..741881, 742308..742310)) /gene="thrC" /locus_tag="AGROH133_04462" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107203" misc_feature complement(742308..742310) /gene="thrC" /locus_tag="AGROH133_04462" /note="catalytic residue [active]" /db_xref="CDD:107203" gene 742655..742807 /locus_tag="AGROH133_04463" /db_xref="GeneID:10266489" CDS 742655..742807 /locus_tag="AGROH133_04463" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278036.1" /db_xref="GI:325292172" /db_xref="GeneID:10266489" /translation="MSFTGLSVAVTGSLSAASRRNEAIGEVMKGFFENSSKTKHANRF FPASLL" gene 742887..743459 /locus_tag="AGROH133_04464" /db_xref="GeneID:10266490" CDS 742887..743459 /locus_tag="AGROH133_04464" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278037.1" /db_xref="GI:325292173" /db_xref="GeneID:10266490" /translation="MSGNFLRLSAAMSLLAVVAGCNSSNPSDSLAVNPPAAQANAVAP VVQANCPTVTVLDANAVHRVYAGGAKDDPQKLAYQVSLSDTTRSCTANETTLTVNVLA QGRLVPGPMSKPGRVTVPIRVTVKDGDGEIYGETTNFAIDVAAGGAGTQFIFNNDHVA IPNGPGGAPRSVSVYIGFAEQGAKAKTKRR" gene complement(743656..744345) /locus_tag="AGROH133_04466" /db_xref="GeneID:10266491" CDS complement(743656..744345) /locus_tag="AGROH133_04466" /note="Haloacid dehalogenase-like hydrolase, HAD-SF-IA-v3: HAD-superfamily hydrolase, subfamily IA, variant 3; Predicted phosphatase/phosphohexomutase" /codon_start=1 /transl_table=11 /product="hydrolase phosphatase protein" /protein_id="YP_004278038.1" /db_xref="GI:325292174" /db_xref="GeneID:10266491" /translation="MSGFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGE RFAGMTWKNILLQVESEASIPFSASLLDKSEKLLDARLERDVKIIEGVKFALSRLTTP RCICSNSSSHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSP DRAVVIEDSVHGVHGAKAAGMRVIGFTGASHTYSSHADRLTDAGAETVISRMQDLPAV IAAMAEWEGAF" misc_feature complement(743683..744336) /locus_tag="AGROH133_04466" /note="Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637" /db_xref="CDD:30982" misc_feature complement(743788..744111) /locus_tag="AGROH133_04466" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature complement(744025..744027) /locus_tag="AGROH133_04466" /note="motif II; other site" /db_xref="CDD:119389" gene 744537..745217 /locus_tag="AGROH133_04467" /db_xref="GeneID:10266492" CDS 744537..745217 /locus_tag="AGROH133_04467" /note="Bacterial regulatory proteins, gntR family; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004278039.1" /db_xref="GI:325292175" /db_xref="GeneID:10266492" /translation="MPKTAKTRPEDTIAARISRTLADRIVRGELSPGERLRQDHIAAE FGASHVPVREAFRRLEAQGLAASIPRRGVRVADFGLADVREVAEMRAALEVLALRHAI PNMTSAILDQAEAATLEGDSAVDVQHWEEANRRFHRLITAPCNMPRLMEAIDGLHAAS ARFLFSAWRAGWERRTDTDHRAILDALRGGRAEEAVRILDGHVQWIGRKAIRTPSGSV HDAFAIVG" misc_feature 744537..745172 /locus_tag="AGROH133_04467" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature 744570..744764 /locus_tag="AGROH133_04467" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(744570..744572,744576..744578,744645..744647, 744648..744653,744675..744689,744693..744698, 744705..744707,744735..744740,744744..744755) /locus_tag="AGROH133_04467" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 744789..745148 /locus_tag="AGROH133_04467" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene 745358..745894 /locus_tag="AGROH133_04468" /db_xref="GeneID:10266493" CDS 745358..745894 /locus_tag="AGROH133_04468" /note="Protein of unknown function DUF1284; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278040.1" /db_xref="GI:325292176" /db_xref="GeneID:10266493" /translation="MSADLFPSSETCPVTVRLRPHHLLCMLTYVGKGYTSGFVENYDR VAARLNAGEEDIELVDGPDDICVGLLCESHAHCFNEGVVQRDEAARLSVSTLLNETIT AGKRLRATPELLEKMRLAFAAGDIRQACRGCQWIRLCDRIAASGFTGVKIGEPPPHPA GQRLTATPAHSSRFSRRP" misc_feature 745400..745804 /locus_tag="AGROH133_04468" /note="Protein of unknown function (DUF1284); Region: DUF1284; cl01419" /db_xref="CDD:154393" gene complement(745854..746954) /locus_tag="AGROH133_04469" /db_xref="GeneID:10266494" CDS complement(745854..746954) /locus_tag="AGROH133_04469" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278041.1" /db_xref="GI:325292177" /db_xref="GeneID:10266494" /translation="MMSVTRVASFSVHAFSAALLLAALPSSLGAQEPAPLYNVVTDAV LFDGGPSLGNSDRVRWDFYKADGAGVRSDVNAGGSYDATFEAKLPAGKYVGVAALGNI RREIPFEVKEGSLTRPKANFDAAELTVVPKRSPGGDVESQAKTEITKDDFKDSVYGQN TTFVPAGELLLTGSIGPARAQETLAIKAGETISHDLVIPSGVVVAKAAYTDGGKAVET DDIRFEALSAKETLDGTRQTINGVYGTGKTMEMPAGDFVMRARLGKVTVEQPFTVTAG KRTEINLNLDAGVLAITAPGAERIDIVETTKDLQGTQKEISGRYGNRHQETLHPGDYS VKVSYDKKSGREPKEIKATVKAAERTETNVPE" gene 747187..748329 /gene="ccrM" /locus_tag="AGROH133_04471" /db_xref="GeneID:10266495" CDS 747187..748329 /gene="ccrM" /locus_tag="AGROH133_04471" /EC_number="2.1.1.72" /note="cell cycle regulated site-specific DNA-methyltransferase protein; DNA modification methylase" /codon_start=1 /transl_table=11 /product="adenine DNA methyltransferase" /protein_id="YP_004278042.1" /db_xref="GI:325292178" /db_xref="GeneID:10266495" /translation="MAAVFPLADFRRAGFDRAGESDAWKDSIIKGDCVAALDALPSQS VDAIFADPPYNLQLGGTLHRPDQSLVDAVDDEWDQFSSFEAYDAFTRAWLLACRRVLK PNGTIWVIGSYHNIFRVGSMLQNLDFWILNDIVWRKTNPMPNFKGRRFQNAHETMIWA SRDPKAKGYTFNYEALKASNDDVQMRSDWLFPICSGHERLKGDDGKKVHPTQKPEALL ARIIMASTKPGDIVLDPFFGSGTTGAVAKRLGRHFVGIEREQDYIDAASARIAAVEPL GKAELTVMTGKRAEPRVAFNTLVESGLVRPGQVLTDAKRRYSAIIRADGTIASGGTAG SIHRLGAKVQGLDACNGWTFWHFEDGDQLKPIDDLRTIIRSELAKA" misc_feature 747220..748095 /gene="ccrM" /locus_tag="AGROH133_04471" /note="DNA modification methylase [DNA replication, recombination, and repair]; Region: COG0863" /db_xref="CDD:31203" misc_feature 747319..747984 /gene="ccrM" /locus_tag="AGROH133_04471" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(748666..749277) /locus_tag="AGROH133_04472" /db_xref="GeneID:10266496" CDS complement(748666..749277) /locus_tag="AGROH133_04472" /note="Haloacid dehalogenase-like hydrolase, HAD-SF-IA-v3: HAD-superfamily hydrolase, subfamily IA, variant 3; Predicted hydrolase (HAD superfamily)" /codon_start=1 /transl_table=11 /product="hydrolase, haloacid dehalogenase-like family" /protein_id="YP_004278043.1" /db_xref="GI:325292179" /db_xref="GeneID:10266496" /translation="MTKIEHIVFDIGKVLIHYDPHIPYSRLIPDADERKWFFENVCTH DWNLEQDRGRGWEDAEALLMEQFPEREEHIRAFRKFWHEMVSHSYDDSVAIMTGLIDN GHDVTMLTNFASDTFREAQKMFPFLTLPRGVTVSGDVKLLKPDVAIYELHAKEFGLDP AASIFIDDTLVNVEGAKAAGWQAVHFTGSEKLKQDLQSYGVDV" misc_feature complement(748720..749262) /locus_tag="AGROH133_04472" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature complement(748738..749259) /locus_tag="AGROH133_04472" /note="haloacid dehalogenase-like hydrolase; Region: Hydrolase; pfam00702" /db_xref="CDD:189678" gene complement(749274..750422) /gene="mutY" /locus_tag="AGROH133_04473" /db_xref="GeneID:10266497" CDS complement(749274..750422) /gene="mutY" /locus_tag="AGROH133_04473" /EC_number="3.2.2.-" /note="A/G-specific DNA glycosylase" /codon_start=1 /transl_table=11 /product="A/G-specific adenine glycosylase" /protein_id="YP_004278044.1" /db_xref="GI:325292180" /db_xref="GeneID:10266497" /translation="MNGPTIGRIEEKRQTMLQKTAPSSHAQMLLAWYDRHHRELPWRT SPAMAAQGKRADPYHVWLSEVMLQQTTVQAVKPYFLKFLATWPHVSDLAAAPVEDVMA AWAGLGYYARARNLKKCAEAVAKDHGGVFPDTEEGLKKLPGIGDYTSAAVAAIAFNRQ AAVMDGNVERVISRLFAIDAPLPGSKPAMKAKVAELTPSDRPGDFAQAMMDLGATICT PKRPACALCPFNGDCLALTHDEPERFPVKAAKKAKPVRLGAAFVAVNASGEILLRRRI ESGLLGGMTEVPTTAWTARVDGGTDTSHAPFAASWQAAGVIVHVFTHFELRLTVYRAQ VPDGLETGADDGWWEPVTNLDAQALPTVMKKVIAQAIPSAFDESRKFR" misc_feature complement(749307..750380) /gene="mutY" /locus_tag="AGROH133_04473" /note="A/G-specific DNA glycosylase [DNA replication, recombination, and repair]; Region: MutY; COG1194" /db_xref="CDD:31387" misc_feature complement(749784..750251) /gene="mutY" /locus_tag="AGROH133_04473" /note="endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056" /db_xref="CDD:28938" misc_feature complement(order(750087..750089,750201..750203, 750210..750218)) /gene="mutY" /locus_tag="AGROH133_04473" /note="minor groove reading motif; other site" /db_xref="CDD:28938" misc_feature complement(749979..750002) /gene="mutY" /locus_tag="AGROH133_04473" /note="helix-hairpin-helix signature motif; other site" /db_xref="CDD:28938" misc_feature complement(order(749793..749795,749805..749807, 749970..749972)) /gene="mutY" /locus_tag="AGROH133_04473" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:28938" misc_feature complement(749928..749930) /gene="mutY" /locus_tag="AGROH133_04473" /note="active site" /db_xref="CDD:28938" misc_feature complement(749724..749774) /gene="mutY" /locus_tag="AGROH133_04473" /note="Iron-sulfur binding domain of endonuclease III; Region: EndIII_4Fe-2S; pfam10576" /db_xref="CDD:192633" misc_feature complement(749313..749660) /gene="mutY" /locus_tag="AGROH133_04473" /note="DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important...; Region: DNA_Glycosylase_C; cd03431" /db_xref="CDD:72889" misc_feature complement(order(749454..749459,749466..749468, 749580..749588)) /gene="mutY" /locus_tag="AGROH133_04473" /note="DNA binding and oxoG recognition site [nucleotide binding]" /db_xref="CDD:72889" gene 750475..750987 /locus_tag="AGROH133_04474" /db_xref="GeneID:10266498" CDS 750475..750987 /locus_tag="AGROH133_04474" /note="Protein of unknown function DUF1159; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278045.1" /db_xref="GI:325292181" /db_xref="GeneID:10266498" /translation="MRYPRKGVIQIAEIANGIMDPLLSKRAGINTALLGSWDEIAGDD FADCTRPEKITWPRRDEGPDRGGYQPGVLTIACEGARALFLTHAQGELIARINGFFGF PAVRQIRIVQKPVSQPVPRRRKPPPLRGDAAKRLDDMMDGIESEALRKAVERLGTAVM QKKKPRGGTI" misc_feature 750478..750966 /locus_tag="AGROH133_04474" /note="Protein of unknown function (DUF721); Region: DUF721; cl02324" /db_xref="CDD:186523" gene 751116..751796 /locus_tag="AGROH133_04475" /db_xref="GeneID:10266499" CDS 751116..751796 /locus_tag="AGROH133_04475" /note="Thioredoxin-like fold; Protein-disulfide isomerase" /codon_start=1 /transl_table=11 /product="disulfide bond formation protein D" /protein_id="YP_004278046.1" /db_xref="GI:325292182" /db_xref="GeneID:10266499" /translation="MHFSELTISRRSLLGGVALAALATALPFAFTPGVAQAQELPEST GDVDMAAVLKPGPLPEAALGDANAPVKIVEYMSMTCPHCANFHNKTFDEIKKKYIDTG KAYFVIREFPFDPRAAAAFMLARCAPEGQYFPFVSMLFKQQQSWATAQDARAALLQLS KMAGFSQESFEACLTNQKLLDDVNATMQRGATEFGVNSTPTFIINGKKYAGDMSVETM SAVIDKLL" misc_feature 751305..751784 /locus_tag="AGROH133_04475" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:193797" gene 751881..755348 /gene="smc" /locus_tag="AGROH133_04478" /db_xref="GeneID:10266500" CDS 751881..755348 /gene="smc" /locus_tag="AGROH133_04478" /note="Chromosome segregation protein SMC; Chromosome segregation ATPases" /codon_start=1 /transl_table=11 /product="chromosome segregation protein" /protein_id="YP_004278047.1" /db_xref="GI:325292183" /db_xref="GeneID:10266500" /translation="MKFNKLRVVGFKSFVEPSEFIIEPGLTGVVGPNGCGKSNLVEAL RWVMGENSYKNMRASGMDDVIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDADEIQ VTRRIERENGSVYRINGKEARAKDVQLLFADASTGARSPSMVGQGRIGELINAKPQAR RQLLEEAAGISGLHSRRHEAELRLRAAETNLERLEDVTAQLESQIESLKRQARQANRF KMLSADIRAREATLLHIRWVEAKEAEGEAESALNQATNIVAEKAQAQMEAAKQQGIAS LKLPELREDEARVAAALQRLQIARTQLDDEANRLLRRRDELARRLSQLGEDIVREERL VSDNAQILARLDEEEADLLEILADSGRHAEEMREAFEAAAAKLTESETVFTAITAERA EAAAGRQQLERAIRELSDRKLRLERQSQEASSEIDAVDEKLSGLPDPSERREAVEAAE IAVEDALIVAEEAEAAVAEARSAEALARGPLETARNRLNALDTEARTITKILAASAAA NGSFTPVAEEMTVERGFEAALGAALGDDLESALDPAAPAYWAGNGDGAGDPALPQGVK PLLNYAQAPDALRRGLAQIGVAADTAEALRLMPSLKAGQRLVTREGALFRWDGHIASA DAPGAAALRLAQKNRLAEIETELEEARFSLEEAEEQLSIRTDDIKSAELRLSEVRDRS RLVTRHLAEAREALTSAERASGDLLRRRDIVSEALNQIGAQIDEIVVQEENARIEMED APDLSALDLRLRESQLEVATDRGLLAEARARHEGVSREAESRQRRLQAIAQERSTWAS RAASAADHIATLREREEEAREEIAELDIAPEEFDEKRRNLLTELQKTEDARRLAADRL AEAENLQRAADRVATTALSELAEAREKRGRAEERLVSAREKRQETEHRIRETLNTEPH MALRLTGLGPDQPKPDIRDVERDLDRLKIERERLGAVNLRAEEEQAELSAKLAALIKE RDDIIDAVRKLRAGIQNLNREGRERLIAAFDVVNSQFQRLFTHLFGGGTAELQLIESD DPLEAGLEILARPPGKKPQTMTLLSGGEQALTAMALIFAVFLTNPAPICVLDEVDAPL DDHNVERYCNLMDEMVASTETRFVIITHNPITMARMNRLFGVTMAEQGVSQLVSVDLQ TAEQLREAV" misc_feature 751881..755336 /gene="smc" /locus_tag="AGROH133_04478" /note="Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:31389" misc_feature 751887..>752150 /gene="smc" /locus_tag="AGROH133_04478" /note="Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (...; Region: ABC_SMC_barmotin; cd03278" /db_xref="CDD:73037" misc_feature 751971..751994 /gene="smc" /locus_tag="AGROH133_04478" /note="Walker A/P-loop; other site" /db_xref="CDD:73037" misc_feature order(751980..751985,751989..751997) /gene="smc" /locus_tag="AGROH133_04478" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73037" misc_feature <755010..755297 /gene="smc" /locus_tag="AGROH133_04478" /note="Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (...; Region: ABC_SMC_barmotin; cd03278" /db_xref="CDD:73037" misc_feature 755040..755069 /gene="smc" /locus_tag="AGROH133_04478" /note="ABC transporter signature motif; other site" /db_xref="CDD:73037" misc_feature 755112..755129 /gene="smc" /locus_tag="AGROH133_04478" /note="Walker B; other site" /db_xref="CDD:73037" misc_feature 755136..755147 /gene="smc" /locus_tag="AGROH133_04478" /note="D-loop; other site" /db_xref="CDD:73037" misc_feature 755214..755234 /gene="smc" /locus_tag="AGROH133_04478" /note="H-loop/switch region; other site" /db_xref="CDD:73037" gene complement(755620..756597) /locus_tag="AGROH133_04479" /db_xref="GeneID:10266501" CDS complement(755620..756597) /locus_tag="AGROH133_04479" /EC_number="1.13.11.39" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Predicted ring-cleavage extradiol dioxygenase" /codon_start=1 /transl_table=11 /product="Biphenyl-2,3-diol 1,2-dioxygenase 3" /protein_id="YP_004278048.1" /db_xref="GI:325292184" /db_xref="GeneID:10266501" /translation="MQFTRRHTLKFAGISCAATALAGALRAEGDPPAASAGTALPFAL TTPMHVSQAALRVRDLDPMIDYYRSVLGLNEVARNARGVTLGAGTVPLLDLVHKPTAD YESPTSAGLFHIAYLMPTRKDLARWLVHAALRQVPLTGFADHNVSEAVYLNDPEGNGI EVYSDRPKDTWVWSGSVVKMGTEPLDVDDLVTLTDTKKSDYEAAPSGMRIGHIHLRVG EIATARAFYEEAVGLKPTQDARSDASFLSSGGYHHHLAVNTWNSRGAKERNATETGLD WFSLAIKNPTDLEAQKTRLRAAGYVLVEMENKVVEAIDPWGTRLRLVPV" misc_feature complement(755626..756480) /locus_tag="AGROH133_04479" /note="Predicted ring-cleavage extradiol dioxygenase [General function prediction only]; Region: COG2514" /db_xref="CDD:32584" misc_feature complement(756085..756456) /locus_tag="AGROH133_04479" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_12; cd07255" /db_xref="CDD:176678" misc_feature complement(order(756115..756117,756259..756261, 756442..756444)) /locus_tag="AGROH133_04479" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176678" misc_feature complement(<755689..755976) /locus_tag="AGROH133_04479" /note="This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632" /db_xref="CDD:196803" misc_feature complement(order(755767..755769,755824..755826, 755830..755832,755869..755871,755950..755952, 755962..755964)) /locus_tag="AGROH133_04479" /note="active site" /db_xref="CDD:176657" misc_feature complement(order(755767..755769,755962..755964)) /locus_tag="AGROH133_04479" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176657" gene 756826..759552 /gene="ppdK" /locus_tag="AGROH133_04481" /db_xref="GeneID:10266502" CDS 756826..759552 /gene="ppdK" /locus_tag="AGROH133_04481" /EC_number="2.7.9.1" /note="catalyzes the formation of phosphoenolpyruvate from pyruvate; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase" /codon_start=1 /transl_table=11 /product="pyruvate phosphate dikinase" /protein_id="YP_004278049.1" /db_xref="GI:325292185" /db_xref="GeneID:10266502" /translation="MKKWVYTFGNGAAEGRAGDVAILGGKGANLAEMASLGLPVPPGL TIITDACALYHKNGRDLPEELKLQVMAGLHGMEAVTGKTFGGSQTPLLLSVRSGARAS MPGMMDTVLNLGLNDRTVQALGHDAGDARFAWDSYRRFIQMYADVVMGLDHELFEEIL EDEKGRLGHEYDTDMSAVEWQHVVALYKQLIEDELGEAFPQDCHVQLWGAIGAVFASW TNHRAVTYRHLHNIPGDWGTAVNVQAMVFGNLGSSSATGVAFTRNPSTGEAELYGEFL VNAQGEDVVAGIRTPQSITEAARLASGSDKPSMEKLMPEAFAEFMVICKRLETHYRDM QDLEFTIERGKLWMLQTRSGKRTTRAAMKIAVDMVEDGLISQEEAVCRIEPSSLDQLL HPTIDPGISRPIIGSGLPASPGAATGEIVFTSEEAVAAEAEGRSVILVRIETSPEDIH GMHAAEGILTTRGGMTSHAAVVARGMGIPCVTGAGSMRVDMRNKVLIGVGCMLKRGDV ITIDGSSGRVMKGEVPMTQPELSGDFGKLMQWADNLRRMTVRTNADTPADARAARAFG AEGIGLCRTEHMFFEGDRIHVMREMILAESEKGRRAALDRLLPMQRSDFTELFQIMHG LPVTIRLLDPPLHEFLPKSDGEIVEVAAAMGMPQTVFRQRLDALHEFNPMLGHRGCRL AISYPEIAEMQARAIFEAAVAAARITGAPVVPEIMVPLVGLRSELDYVKAVIDTVAAE VAEETGMTLEYLTGTMIELPRAALRAHVIAEAAEFFSFGTNDLTQTTFGISRDDAARF INTYQRKGIIERDPFISLDFDGVGELIRIAAERGRQTRPELKLGICGEHGGDPASIHF CEDADLDYVSCSPFRVPIARLAAAQATLAARARQGETASNVAFIPVRGLVGR" misc_feature 756826..759447 /gene="ppdK" /locus_tag="AGROH133_04481" /note="pyruvate phosphate dikinase; Provisional; Region: PRK09279" /db_xref="CDD:181751" misc_feature 756874..757938 /gene="ppdK" /locus_tag="AGROH133_04481" /note="Pyruvate phosphate dikinase, PEP/pyruvate binding domain; Region: PPDK_N; pfam01326" /db_xref="CDD:189943" misc_feature 758125..758370 /gene="ppdK" /locus_tag="AGROH133_04481" /note="PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; cl01586" /db_xref="CDD:194171" misc_feature 758407..759447 /gene="ppdK" /locus_tag="AGROH133_04481" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(759530..759802) /locus_tag="AGROH133_04482" /db_xref="GeneID:10266503" CDS complement(759530..759802) /locus_tag="AGROH133_04482" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_004278050.1" /db_xref="GI:325292186" /db_xref="GeneID:10266503" /translation="MRVSIVLGSLAALLALTACQTLTPEERRARDEATCRGYGFRPGT DPMAGCLLDLEMDRRADNRAWQAQMNRDMFYRPVVVERRIIVQPNP" gene complement(759984..760346) /gene="pliC" /locus_tag="AGROH133_04484" /db_xref="GeneID:10266504" CDS complement(759984..760346) /gene="pliC" /locus_tag="AGROH133_04484" /note="PliC; periplasmic lysozyme inhibitor of c-type lysozyme" /codon_start=1 /transl_table=11 /product="lysozyme inhibitor" /protein_id="YP_004278051.1" /db_xref="GI:325292187" /db_xref="GeneID:10266504" /translation="MGNKIAPRKNMKKSSIILLSIFSFIAFPNLTAAAGTTVDSVSYS CAKNEVLRVVYVNGADGKSFAILQQMEEMIPMAETISASGAVYNAIDPNYSYTLRTKG SNASLEDSRGTILDGCSE" misc_feature complement(759990..>760250) /gene="pliC" /locus_tag="AGROH133_04484" /note="Membrane-bound lysozyme-inhibitor of c-type lysozyme; Region: MliC; cl01604" /db_xref="CDD:194175" gene complement(760509..761927) /locus_tag="AGROH133_04487" /db_xref="GeneID:10266505" CDS complement(760509..761927) /locus_tag="AGROH133_04487" /note="Sodium:dicarboxylate symporter family; Na+/H+-dicarboxylate symporters" /codon_start=1 /transl_table=11 /product="Na+/H+ dicarboxylate symporter" /protein_id="YP_004278052.1" /db_xref="GI:325292188" /db_xref="GeneID:10266505" /translation="MRVKSALSSFSCIKKRQAMSQATTPARSSGSKPFYRNFGFQVLI AMVIGLLLGLVARNIGPDAAGSPNWLSVTLQTIGSIFVQLLRALVPPLIFTAIVASIA NLKNLSNAAKLVWQTLLWFAITALIAVVIGIVLGLAIQPGVNTAIANTAAAAPSSTGS WLDFLKGLVPANVFGLEASTKVNNGSASTSLNFNVLQLLVVSIAFGVAALKAGKAAEP FLAFNQSLLAIVRKILWWVIRLTPIGTIGLLGRAVDQYGWTTLSQLGWYAAAVYIGLA LVLFVVYPALLLAHGLKPSRFFAGAWPAIQLAFVSRSSIGTLPVTETVTEKSLGVPRE YAAFAVPLGATTKMDGCAAIYPAISAIFIAQFFQVPLGIQDYVLIVFVSVLGSAATAG LTGAVVMLTLTLSTLGLPLEGVGLLLAIDPILDMGRTAVNVAGQALVPTIVAKREGIL DEAVYNNAKDIEALDDRDAVAA" misc_feature complement(760593..761816) /locus_tag="AGROH133_04487" /note="Sodium:dicarboxylate symporter family; Region: SDF; cl00573" /db_xref="CDD:193876" gene 762405..763325 /locus_tag="AGROH133_04497" /db_xref="GeneID:10266506" CDS 762405..763325 /locus_tag="AGROH133_04497" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278053.1" /db_xref="GI:325292189" /db_xref="GeneID:10266506" /translation="MTVRFVRPFSVAAYLSRYLGMAALALFLVAAGIHRFGPLTTPDL VGLLMIAAGIALVAMLLALVGLERLWTTGARGGLSALAALLLSALPLGVVGYGAFLYW QQPKIYDISTDLADAPEWLVPPVANQQWLARPATVAKADRDAQAVAYASLAGRRYEGA IDRIYTAAKKMAAAQSIRITHTKGVIGTVEPPSVGVPEQDKSQPTEEAPVEDLPSIVP VPMARPVEAPQPTFFNGSGVVLMQGEKRTRIWGLRFDILIRLKEEAETTIVDVRVASR YGPHDLGMGAAIAEAYLDALDAEMQGLNDN" misc_feature <763140..763292 /locus_tag="AGROH133_04497" /note="Protein of unknown function (DUF1499); Region: DUF1499; cl01841" /db_xref="CDD:194198" gene complement(763448..764356) /locus_tag="AGROH133_04501" /db_xref="GeneID:10266507" CDS complement(763448..764356) /locus_tag="AGROH133_04501" /note="Metallo-beta-lactamase superfamily; Zn-dependent hydrolases, including glyoxylases" /codon_start=1 /transl_table=11 /product="metallo-beta-lactamase superfamily protein" /protein_id="YP_004278054.1" /db_xref="GI:325292190" /db_xref="GeneID:10266507" /translation="MADPAFDLDFRPAYGEVVPVAPLIQRITVNNPSAFTFHGTNSYI VGDRSVAVIDPGPEDEAHFQALMAALDGREVTHIFVSHTHRDHSPLAQRLRQATGAIT VAEGPHRAARPLHVGETNPFAESSDTAFVPDVALGDGQSLSGDGWALTALHTPGHTAN HAAFALEGSGIVFSADHVMAWATTIVAPPDGSMSDYMASLERLLARDDRLFLPGHGGP VNDPAAFMRGLRAHRRMRERAVLKRIREGDRRIADMVKVIYASTDKRLHGAAALSVLA HIEDLIEKGEVRTEGAPSLLGEYFPA" misc_feature complement(763712..764254) /locus_tag="AGROH133_04501" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 764559..764633 /locus_tag="AGROH133_04502" /db_xref="GeneID:10266508" tRNA 764559..764633 /locus_tag="AGROH133_04502" /product="tRNA-Gln" /anticodon=(pos:764591..764593,aa:Gln) /db_xref="GeneID:10266508" gene complement(764897..766624) /gene="mqo" /locus_tag="AGROH133_04503" /db_xref="GeneID:10266509" CDS complement(764897..766624) /gene="mqo" /locus_tag="AGROH133_04503" /EC_number="1.1.5.4" /note="malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; Predicted dehydrogenase" /codon_start=1 /transl_table=11 /product="malate dehydrogenase" /protein_id="YP_004278055.1" /db_xref="GI:325292191" /db_xref="GeneID:10266509" /translation="MTPIDQDKSQLTDLSSDALPSHALPMNRRQVLGTALAGLAATAL PTSSLLANTATKKVDVLLIGGGIMSATLGVWLRELEPTWSMQMLERLDGVALESSNGW NNAGTGHSALAELNYTPEDDNGNIKISQAVNINESFQISRQFWAWQVRNGVLKNPRSF INHTPHMSFVWGDENIAYLEKRYEALKASPLFAGMEYSSDPEQLKKWVPLMMEGRDPS QKIGATWSPLGTDMEFGEITRQFVSHLQSGRNFDLQVNSEVSDIQRNADGSWRVTYSN LKTDAEQTVDAKFVFIGAGGGALHLLQMSGIPEGDNYAGFPVGGSFLINDNPDVTMQH LAKAYGKASVGSPPMSVPHLDTRVLGGKRVILFGPFATFSTKFLKEGSYFDLVSSVTT SNAWPMVRVGIDEYPLVEYLAGQLMMSDDDRFAALKEYFPNAKQGEWRLWQAGQRVQI IKRDEEKGGVLRLGTEIVAAQDGSIAGLLGASPGASTAAPIMLSVLEKVFKDKVATPQ WQAKIRQIVPSYGTKLNDDPEKVQQEWAYTAEHLQLPTPPQIDLGALKGAGAAPAGAP VKKVPDIAL" misc_feature complement(764987..766459) /gene="mqo" /locus_tag="AGROH133_04503" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" misc_feature complement(765041..766459) /gene="mqo" /locus_tag="AGROH133_04503" /note="Predicted dehydrogenase [General function prediction only]; Region: COG0579" /db_xref="CDD:30924" gene complement(767020..767439) /locus_tag="AGROH133_04504" /db_xref="GeneID:10266510" CDS complement(767020..767439) /locus_tag="AGROH133_04504" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278056.1" /db_xref="GI:325292192" /db_xref="GeneID:10266510" /translation="MLFRSVTLAGLAIALSACTTSTGSAPSFTQKSPVETRWVGQSAG IFFAKFGPPLSDTETGSSTIYNWRGGYKKATIPAKFEEGKDGKKGRQISPARTASLSC TVQLTVSSDYTITSVRTVSDRPGVNGPSYCAEFLAAN" gene 767704..767780 /locus_tag="AGROH133_04506" /db_xref="GeneID:10266511" tRNA 767704..767780 /locus_tag="AGROH133_04506" /product="tRNA-Pro" /anticodon=(pos:767738..767740,aa:Pro) /db_xref="GeneID:10266511" gene complement(767940..768260) /locus_tag="AGROH133_04507" /db_xref="GeneID:10266512" CDS complement(767940..768260) /locus_tag="AGROH133_04507" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004278057.1" /db_xref="GI:325292193" /db_xref="GeneID:10266512" /translation="MIDWTYIQDHWDWAGHILEAVIMAAIVALLFRLLVSWRIAWIIG LAFAAGHFHGREKRDYEVSVEMPPPHLEGYYFWNWSWDGLTDFWPTALVCVLLILPLA RRRN" gene complement(768257..768478) /locus_tag="AGROH133_04510" /db_xref="GeneID:10266513" CDS complement(768257..768478) /locus_tag="AGROH133_04510" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278058.1" /db_xref="GI:325292194" /db_xref="GeneID:10266513" /translation="MKILTAAICLVSVGVLSGCVDDRGYRSGGYYTTGVYYRTYERDR HYRDYDRRDWRDRRDWRDRRDWRGDYRYR" gene complement(768889..770370) /gene="cysN" /locus_tag="AGROH133_04511" /db_xref="GeneID:10266514" CDS complement(768889..770370) /gene="cysN" /locus_tag="AGROH133_04511" /EC_number="2.7.7.4" /note="may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; GTPases - Sulfate adenylate transferase subunit 1" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase subunit 1" /protein_id="YP_004278059.1" /db_xref="GI:325292195" /db_xref="GeneID:10266514" /translation="MTAAATNTASTATILPFAEHSKATRDTRPLRLITCGSVDDGKST LIGRLLWDTKAVKEDQAATLHRDSGKQNDLGLPDFALLLDGLQAEREQGITIDVAYRY FSTDRRAFIVADTPGHEQYTRNMATGASTADLAVLLVDARTGILEQTRRHATIAALMG IRQFVLAINKIDLTNYDKAGFELIAHEFRDFASDLGIKQITAIPMSALKGENVVLSGK ASMPWYEGPTLVETLELATVRSAQSGGFRFPVQRVSRPGESFRGYQGTVAGGSVKPGD SVVVLPSGMVANVKQIVTFDLVRNAAVAGDAVTLVLDRQVDVSRGDMIVSIEAQPQTG LAFDAQIVALQPGGIEAGKRYWLKSGSRRQRVSVQPVSQLNLKEGEWQAHETSLPMNA IGKVRLSFDETAIFDAYEQNRATGSFILIDPDTNNTVAGGMIAGKRSVGATEEQGDRV ILSLPAHLAEKLLASELLAKHRDEIDIRRTDGATASRLISDLD" misc_feature complement(769069..770283) /gene="cysN" /locus_tag="AGROH133_04511" /note="sulfate adenylyltransferase, large subunit; Region: CysN; TIGR02034" /db_xref="CDD:131089" misc_feature complement(769651..770280) /gene="cysN" /locus_tag="AGROH133_04511" /note="CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which...; Region: CysN_ATPS; cd04166" /db_xref="CDD:133366" misc_feature complement(order(769981..769983,769990..769992, 770038..770040,770044..770046,770065..770067, 770071..770073,770077..770082,770278..770280)) /gene="cysN" /locus_tag="AGROH133_04511" /note="CysD dimerization site [polypeptide binding]; other site" /db_xref="CDD:133366" misc_feature complement(770242..770265) /gene="cysN" /locus_tag="AGROH133_04511" /note="G1 box; other site" /db_xref="CDD:133366" misc_feature complement(order(769810..769812,769822..769824, 769942..769947,770014..770019,770071..770076, 770218..770223,770230..770232,770239..770244, 770254..770256,770260..770262)) /gene="cysN" /locus_tag="AGROH133_04511" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133366" misc_feature complement(order(769747..769755,769852..769857, 769861..769866,770110..770112,770239..770250, 770254..770256)) /gene="cysN" /locus_tag="AGROH133_04511" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133366" misc_feature complement(770074..770106) /gene="cysN" /locus_tag="AGROH133_04511" /note="Switch I region; other site" /db_xref="CDD:133366" misc_feature complement(770086..770088) /gene="cysN" /locus_tag="AGROH133_04511" /note="G2 box; other site" /db_xref="CDD:133366" misc_feature complement(770020..770031) /gene="cysN" /locus_tag="AGROH133_04511" /note="G3 box; other site" /db_xref="CDD:133366" misc_feature complement(769969..770025) /gene="cysN" /locus_tag="AGROH133_04511" /note="Switch II region; other site" /db_xref="CDD:133366" misc_feature complement(769855..769866) /gene="cysN" /locus_tag="AGROH133_04511" /note="G4 box; other site" /db_xref="CDD:133366" misc_feature complement(769747..769755) /gene="cysN" /locus_tag="AGROH133_04511" /note="G5 box; other site" /db_xref="CDD:133366" misc_feature complement(769393..769635) /gene="cysN" /locus_tag="AGROH133_04511" /note="CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of...; Region: CysN_NodQ_II; cd03695" /db_xref="CDD:58086" misc_feature complement(769069..769377) /gene="cysN" /locus_tag="AGROH133_04511" /note="TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of...; Region: CysN_NoDQ_III; cd04095" /db_xref="CDD:58077" gene complement(770370..771323) /gene="cysD" /locus_tag="AGROH133_04512" /db_xref="GeneID:10266515" CDS complement(770370..771323) /gene="cysD" /locus_tag="AGROH133_04512" /EC_number="2.7.7.4" /note="with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase subunit 2" /protein_id="YP_004278060.1" /db_xref="GI:325292196" /db_xref="GeneID:10266515" /translation="MSNAVHETDSKNTVASKPPLDPHLKALENEAIHIFREVAAEFDN PVMLYSIGKDSSVLLHLARKAFFPGRVPFPLLHVNTGWKFKEMIEFRDKIVKEYDLDL ISYTNPRGASENVTPFTHGSALYTDIMKTEALRQALDAGQFDAAFGGARRDEEASRAK ERIYSFRTPDHKWDPRNQRPELWNIYNGMVRKGESVRAFPLSNWTEVDIWRYIEAENI PLVPLYYAAERPYIERDGMMILAEDERLELLPGEEIQHGSIRFRTLGCFPLTGAIHSE AATLQEVIAELEIATVSERQGRAIDRDQSGSMEKKKREGYF" misc_feature complement(770373..771254) /gene="cysD" /locus_tag="AGROH133_04512" /note="sulfate adenylyltransferase, small subunit; Region: CysD; TIGR02039" /db_xref="CDD:131094" misc_feature complement(770652..771194) /gene="cysD" /locus_tag="AGROH133_04512" /note="This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713" /db_xref="CDD:30168" misc_feature complement(order(770733..770735,770745..770747, 770850..770852,770934..770936)) /gene="cysD" /locus_tag="AGROH133_04512" /note="Active Sites [active]" /db_xref="CDD:30168" gene complement(771351..772133) /gene="cysH" /locus_tag="AGROH133_04513" /db_xref="GeneID:10266516" CDS complement(771351..772133) /gene="cysH" /locus_tag="AGROH133_04513" /EC_number="1.8.4.8" /note="3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes" /codon_start=1 /transl_table=11 /product="phosphoadenosine phosphosulfate reductase" /protein_id="YP_004278061.1" /db_xref="GI:325292197" /db_xref="GeneID:10266516" /translation="MEIPDVTMTINSANASADTASLDATLAGLDLAGRLSFIAGLGGR AVFTTSLGIEDQVITAAIGTHRLPIDVVTLETGRLFKETVDLIEETEERFGIDIRRFR PEQDDIDAYAEKYGLNGFYESIEARHACCHVRKLIPLGKALEGATFWITGLRRGQSGN RATTPFAEFDAERNLIKVNALADWDIDQIKAYVASENIPVNPLHARGYPSIGCEPCTR AIKPGEPERAGRWWWENDEKRECGLHVAGADQTSAISAIPQR" misc_feature complement(771498..772004) /gene="cysH" /locus_tag="AGROH133_04513" /note="This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713" /db_xref="CDD:30168" misc_feature complement(order(771603..771605,771615..771617, 771651..771653,771729..771731)) /gene="cysH" /locus_tag="AGROH133_04513" /note="Active Sites [active]" /db_xref="CDD:30168" gene 772317..772778 /locus_tag="AGROH133_04514" /db_xref="GeneID:10266517" CDS 772317..772778 /locus_tag="AGROH133_04514" /note="Transcriptional regulator, Rrf2; Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, BadM/Rrf2 family protein" /protein_id="YP_004278062.1" /db_xref="GI:325292198" /db_xref="GeneID:10266517" /translation="MCSTGFTMISQKAKYALRALLSLAKADGGCPVQISDIAREQAIP KKFLEQILLEMKKERIVESRRGKQGGYLLARPAADITFGEVLRLIDGPLAPLPCLSQT AYRRCEDCDGEKQCEIRHVFARVADATRNILFNTTVADAVAGVEVPELLTA" misc_feature 772338..772766 /locus_tag="AGROH133_04514" /note="Predicted transcriptional regulator [Transcription]; Region: COG1959" /db_xref="CDD:32142" misc_feature 772341..772583 /locus_tag="AGROH133_04514" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 773024..774049 /locus_tag="AGROH133_04515" /db_xref="GeneID:10266518" CDS 773024..774049 /locus_tag="AGROH133_04515" /note="ABC transporter substrate-binding protein (sulfate); ABC-type sulfate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="sulfate ABC transporter substrate-binding protein" /protein_id="YP_004278063.1" /db_xref="GI:325292199" /db_xref="GeneID:10266518" /translation="MSKLLSGLSVFALGLSLALGGVGSAAAQTKLLNVSYDPTRELYK DFNEAFAKKWKADTGEDVTIQQSHGGSGKQARSVIDGLEADVVTLALQSDIDAIVQNS GKINKDWRGRLPHNSSPYTSTIVFLVRKGNPKGIHNWGDLVKGDVQIVTPNPKTSGGA RWNYLAAWAWANEEFKGDQDKIKAYVGELYKRAPVLDTGARGSTVTFAQRQIGDVLLA WENEAYLAGQEFGADAFDIIVPPISILAEPPVAVVDANVDAKGTRKAAEAYLQYLYSD EGQNIAAKHFYRPSNPAVVSKDLLKQLPDIKLVTIDDPQFGGWAKAQPEHFGDGGIFD QIYKPAK" misc_feature 773105..774046 /locus_tag="AGROH133_04515" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 774251..775108 /gene="cysT" /locus_tag="AGROH133_04518" /db_xref="GeneID:10266519" CDS 774251..775108 /gene="cysT" /locus_tag="AGROH133_04518" /note="Sulphate ABC transporter permease protein 2; ABC-type sulfate transport system, permease component" /codon_start=1 /transl_table=11 /product="sulfate transport system permease protein cysT" /protein_id="YP_004278064.1" /db_xref="GI:325292200" /db_xref="GeneID:10266519" /translation="MSNNTSGNRWKWRQSSVIPGFGLTFGYTVAYLFLIILIPLGGLI WSTAKLGFADFIAIAVDSRTLNALRVSFGTAFIAALVNAVFGVIVAWVLTRYRFPGRR FVDAIVDLPFALPTAVAGIALTTLYANRGWVGSLFEPFGIKIAFTPTGIVIALIFIGL PFVVRTVQPVMEEIDRQVEEVAATLGANRFQTISRVLLPSLTPAILTGFALAFARGIG EYGSVIFIAGNIPYVSEIAPLLIVIRLEEFNYAGATAIATIMLIISFAMLFLINLIQA WSRKRYGYV" misc_feature 774284..775099 /gene="cysT" /locus_tag="AGROH133_04518" /note="ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]; Region: CysU; COG0555" /db_xref="CDD:30901" misc_feature 774452..775045 /gene="cysT" /locus_tag="AGROH133_04518" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(774500..774505,774512..774517,774530..774532, 774560..774571,774575..774604,774611..774616, 774620..774622,774719..774724,774728..774730, 774734..774736,774743..774748,774752..774754, 774764..774769,774776..774778,774827..774829, 774869..774874,774881..774883,774902..774913, 774920..774925,774962..774967,774995..775000, 775007..775012,775016..775021,775028..775033, 775040..775045) /gene="cysT" /locus_tag="AGROH133_04518" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(774578..774622,774902..774919) /gene="cysT" /locus_tag="AGROH133_04518" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(774620..774622,774704..774706,774920..774922, 774956..774958,774965..774967,774995..774997) /gene="cysT" /locus_tag="AGROH133_04518" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(774779..774817,774833..774838,774848..774850) /gene="cysT" /locus_tag="AGROH133_04518" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 775101..775970 /gene="cysW" /locus_tag="AGROH133_04526" /db_xref="GeneID:10266520" CDS 775101..775970 /gene="cysW" /locus_tag="AGROH133_04526" /note="Sulphate ABC transporter permease protein 2; ABC-type sulfate transport system, permease component" /codon_start=1 /transl_table=11 /product="Sulfate transport system permease protein cysW" /protein_id="YP_004278065.1" /db_xref="GI:325292201" /db_xref="GeneID:10266520" /translation="MSDASRTSSRPFRDPASESLPARLVLIAIAFLFLAAFLVLPLVS VFFEAFRKGADAFWEAIVEPDALSAIRLTLLVAAISVPLNLIFGVAAAWAIAKFEFKG KAFLITLIDLPFSISPVISGLVYVILFSSHSVLGPWLKSYGIEILFAVPGIVLATIFV TFPFVARELIPLMQEQGNGDEEAAISLGATGWQTFWYVTLPNIKWGLLYGVLLCNARA MGEFGAVSVVSGHIRGETNTMPLHVEILYNEYNIGAAFAVATLLAGLALVTLVLKTIL EIRFGAGNAAGKH" misc_feature 775308..775856 /gene="cysW" /locus_tag="AGROH133_04526" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(775356..775361,775368..775373,775386..775388, 775416..775427,775431..775460,775467..775472, 775476..775478,775572..775577,775584..775586, 775590..775592,775599..775604,775608..775610, 775620..775625,775632..775634,775683..775685, 775725..775730,775737..775739,775758..775769, 775776..775781,775818..775823,775851..775856) /gene="cysW" /locus_tag="AGROH133_04526" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(775434..775478,775758..775775) /gene="cysW" /locus_tag="AGROH133_04526" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(775476..775478,775557..775559,775776..775778, 775812..775814,775821..775823,775851..775853) /gene="cysW" /locus_tag="AGROH133_04526" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(775635..775673,775689..775694,775704..775706) /gene="cysW" /locus_tag="AGROH133_04526" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 775982..777022 /gene="cysA" /locus_tag="AGROH133_04532" /db_xref="GeneID:10266521" CDS 775982..777022 /gene="cysA" /locus_tag="AGROH133_04532" /note="Sulphate transport system permease protein 1; ABC-type sulfate/molybdate transport systems, ATPase component" /codon_start=1 /transl_table=11 /product="sulfate ABC transporter ATP-binding protein" /protein_id="YP_004278066.1" /db_xref="GI:325292202" /db_xref="GeneID:10266521" /translation="MEVKVSGITKQFDRFPALNDVSLDIRSGELIALLGPSGSGKTTL LRLIAGLEQPTQGRIFFGDEDASHRSVQERNVGFVFQHYALFRHMTVADNIAFGLKVR PSASRPPKAEIRRRVSELLDMVHLTGLEKRYPTQLSGGQRQRVALARAVAIEPKVLLL DEPFGALDAKVRKELRRWLREFHDRTGHTTVFVTHDQEEALELADRVVVMSQGKIEQV GTADDVYDTPNSPFVFSFIGESSSLPVTIRDGQVVFQGESIGVAENGAGEGELFFRPE DVVLTDEKNALYGKVTTCRRLAGTRIAEIDIANNGHDPYHLEIEVPLNAAVAVGAELR FRPTRWKVFGKK" misc_feature 775982..777010 /gene="cysA" /locus_tag="AGROH133_04532" /note="ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]; Region: CysA; COG1118" /db_xref="CDD:31315" misc_feature 775982..776698 /gene="cysA" /locus_tag="AGROH133_04532" /note="Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-...; Region: ABC_CysA_sulfate_importer; cd03296" /db_xref="CDD:73055" misc_feature 776084..776107 /gene="cysA" /locus_tag="AGROH133_04532" /note="Walker A/P-loop; other site" /db_xref="CDD:73055" misc_feature order(776093..776098,776102..776110,776222..776224, 776462..776467,776564..776566) /gene="cysA" /locus_tag="AGROH133_04532" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73055" misc_feature 776213..776224 /gene="cysA" /locus_tag="AGROH133_04532" /note="Q-loop/lid; other site" /db_xref="CDD:73055" misc_feature 776390..776419 /gene="cysA" /locus_tag="AGROH133_04532" /note="ABC transporter signature motif; other site" /db_xref="CDD:73055" misc_feature 776450..776467 /gene="cysA" /locus_tag="AGROH133_04532" /note="Walker B; other site" /db_xref="CDD:73055" misc_feature 776474..776485 /gene="cysA" /locus_tag="AGROH133_04532" /note="D-loop; other site" /db_xref="CDD:73055" misc_feature 776552..776572 /gene="cysA" /locus_tag="AGROH133_04532" /note="H-loop/switch region; other site" /db_xref="CDD:73055" misc_feature 776822..776995 /gene="cysA" /locus_tag="AGROH133_04532" /note="TOBE-like domain; Region: TOBE_3; pfam12857" /db_xref="CDD:193331" gene complement(777570..778583) /gene="qor" /locus_tag="AGROH133_04533" /db_xref="GeneID:10266522" CDS complement(777570..778583) /gene="qor" /locus_tag="AGROH133_04533" /EC_number="1.6.5.5" /note="Quinone oxidoreductase , PIG3; NADPH:quinone reductase and related Zn- dependent oxidoreductases" /codon_start=1 /transl_table=11 /product="quinone oxidoreductase" /protein_id="YP_004278067.1" /db_xref="GI:325292203" /db_xref="GeneID:10266522" /translation="MPENVTLPEKMRFIDLPSHGGPEVMQLSQAPLPTPARGEILVRV EAAGVNRPDVAQRQGAYPPPKDASPILGLEIAGEVVALGEGVSEFKPGDKVCALANGG GYAQYCTVPAGQALPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTS GIGTTAIQLAKAFGADVYATAGSAEKCEACVKLGAKRAINYRDEDFTAVIKAETDGKG VDVVLDMIGAAYFEKNIAALAKDGCLSIIAFLGGAVAEKVDLRPIMVKRLTVTGSTMR PRTADEKRAIRDELIEQVWPLIESGKVAPVINKVFTLDEVVEAHRLMETSNHIGKIVM RVS" misc_feature complement(777576..778553) /gene="qor" /locus_tag="AGROH133_04533" /note="putative NAD(P)H quinone oxidoreductase, PIG3 family; Region: quinone_pig3; TIGR02824" /db_xref="CDD:163034" misc_feature complement(777585..778553) /gene="qor" /locus_tag="AGROH133_04533" /note="PIG3 p53-inducible quinone oxidoreductase; Region: p53_inducible_oxidoreductase; cd05276" /db_xref="CDD:176180" misc_feature complement(order(777600..777602,777615..777617, 777759..777767,777834..777836,777840..777845, 777906..777911,777981..777983,778026..778028, 778038..778043,778098..778106,778113..778115, 778167..778169,778176..778178,778188..778190, 778431..778436)) /gene="qor" /locus_tag="AGROH133_04533" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176180" gene complement(778672..780474) /locus_tag="AGROH133_04534" /db_xref="GeneID:10266523" CDS complement(778672..780474) /locus_tag="AGROH133_04534" /note="EAL domain; FOG: EAL domain" /codon_start=1 /transl_table=11 /product="GGDEF/EAL sensory box protein" /protein_id="YP_004278068.1" /db_xref="GI:325292204" /db_xref="GeneID:10266523" /translation="MPAVTLENDVIRRFASGHMFPMAKLVLETAFQPIVEATTGTIFG YESLMRGHDRLGFSNPLALLDQAAEDGELKAFEQMLASRALAKFSTLADFSTTTLFLN LDVRLIPHGDAILDKLVGHLARAGIPASSICFELSERFDNTSVPEFKALIARMRKEGF KLAIDDFGAGHGEMKLLCDYPLDYLKIDRHFISGVDHLPRKQHLVRNIVNIAHVLGVR VIAEGIETEAEFLTCREYGVDLVQGWLIARPTVFTSELPESFPHLNRVGVARRNSQSL DEILIRREIERLPTVYEHDSVDSVFELFRRNPQQAFFPVLNANGEPRGVINEYHLKEY IYRPFGRDLLKNKIYERTISHFVDPAPIVGLDADADQLMNMFASMGGSACIILTENMR YAGIVSAASLIKVINEKQLKMAQDQNPLTALPGNRAIGGFIADSCGDGDETRFFCYCD FDNFKPFNDKYGFNAGDHAITLFSALMRRYFFAGDCFLGHIGGDDFFVGVRDWAVEEL TEILERLLSDFHGEVAELYSPEDRQAGRMVGLDRRGNERDFALLRCSIGVLTLPKGLI IANPERIGSEIAGIKTAAKENEGGLVIRVFGETK" misc_feature complement(779728..780396) /locus_tag="AGROH133_04534" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" misc_feature complement(779263..779619) /locus_tag="AGROH133_04534" /note="The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-...; Region: CBS_pair; cl10010" /db_xref="CDD:99705" misc_feature complement(778783..779220) /locus_tag="AGROH133_04534" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(778993..778995,779125..779127)) /locus_tag="AGROH133_04534" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(778990..779001,779005..779007, 779074..779076,779086..779088,779098..779103, 779110..779112)) /locus_tag="AGROH133_04534" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(778933..778935,779020..779022)) /locus_tag="AGROH133_04534" /note="I-site; other site" /db_xref="CDD:143635" gene complement(780657..780896) /locus_tag="AGROH133_04535" /db_xref="GeneID:10266524" CDS complement(780657..780896) /locus_tag="AGROH133_04535" /note="Ribbon-helix-helix" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278069.1" /db_xref="GI:325292205" /db_xref="GeneID:10266524" /translation="MPMVTVSISPEQAARMREAVNSGAYASGSEVVRAALRLWAASAA ANDADTEAAAPVEADRERLNVAELYAAHTGHVRRA" gene 781247..781867 /gene="betI" /locus_tag="AGROH133_04536" /db_xref="GeneID:10266525" CDS 781247..781867 /gene="betI" /locus_tag="AGROH133_04536" /note="HTH-type; bet1; Repressor involved in choline regulation of the bet genes; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator BetI" /protein_id="YP_004278070.1" /db_xref="GI:325292206" /db_xref="GeneID:10266525" /translation="MPKIGMEPLRRKALVDAALRTIGHHGSLNVTMSDIAREAGVSPA LAHHYFGSKQQLLLETIRSLLRDLRRDAVAALTRANGPRERLSAIVHVSFQSDQFTPE TVAAWLAFYVEAQRSEETRRLLVLYSRRLRSNLMASLNRLCPPDDAARIAEGAAALID GLYIRHSLRSAPLGLASAPALVEDYFDLQLKPYPDGQRPKPSVRIL" misc_feature 781247..781834 /gene="betI" /locus_tag="AGROH133_04536" /note="transcriptional regulator BetI; Validated; Region: PRK00767" /db_xref="CDD:179115" misc_feature 781286..781423 /gene="betI" /locus_tag="AGROH133_04536" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 781879..783360 /gene="betB" /locus_tag="AGROH133_04538" /db_xref="GeneID:10266526" CDS 781879..783360 /gene="betB" /locus_tag="AGROH133_04538" /EC_number="1.2.1.8" /note="catalyzes the formation of betaine from betaine aldehyde; NAD-dependent aldehyde dehydrogenases" /codon_start=1 /transl_table=11 /product="betaine aldehyde dehydrogenase" /protein_id="YP_004278071.1" /db_xref="GI:325292207" /db_xref="GeneID:10266526" /translation="MTIATSLRAQPKASHFIDGDYVEDNAGTLFESVFPATGEVIARL HAATPAIVARAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNEALSTLETLDTGK PIQETIVADPTSGADAFEFFGGIAPSALNGNYIPLGGDFAYTKRVPLGVCVGIGAWNY PQQIACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRDTG PLLVNHPDVAKVSLTGSVPTGRKVAAAAAGHLKHVTMELGGKSPLIVFDDADIESAVG GAMLGNFYSSGQVCSNGTRVFVQKKAKDRFLENLKRRTEAMILGDPLDYATHLGPLVS KAQQEKVLGYIEKGKAEGATLVTGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIF GPVMCVLDFDDEDEVLARANATEFGLAGGVFTADLARAHRVVDQLEAGTLWINTYNLC PVEIPFGGSKQSGFGRENSAAALEHYSELKTVYVSTGKVDAPY" misc_feature 781939..783324 /gene="betB" /locus_tag="AGROH133_04538" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature 781981..783339 /gene="betB" /locus_tag="AGROH133_04538" /note="NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961" /db_xref="CDD:196287" misc_feature order(782341..782355,782377..782379,782422..782424, 782428..782433,782572..782583,782590..782592, 782599..782604,782644..782652,782746..782748, 783046..783048,783052..783054,783130..783132, 783244..783246) /gene="betB" /locus_tag="AGROH133_04538" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143395" misc_feature order(782353..782355,782644..782646,782737..782739, 782746..782748) /gene="betB" /locus_tag="AGROH133_04538" /note="catalytic residues [active]" /db_xref="CDD:143395" gene 783428..785077 /gene="betA" /locus_tag="AGROH133_04539" /db_xref="GeneID:10266527" CDS 783428..785077 /gene="betA" /locus_tag="AGROH133_04539" /EC_number="1.1.99.1" /note="catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; Choline dehydrogenase and related flavoproteins" /codon_start=1 /transl_table=11 /product="choline dehydrogenase" /protein_id="YP_004278072.1" /db_xref="GI:325292208" /db_xref="GeneID:10266527" /translation="MQADYIIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQ MPAALAWPMSMKRYNWGYLSEPEPNLDNRRITAPRGKVIGGSSSINGLVYVRGHAEDF NRWEELGAHGWAYADVLPYFKRMEHSHGGEEGWRGTDGPLHVQRGPVSNPLFHAFIQA GAQAGFELTDDYNGSKQEGFGLMEQTIHNGRRWSAANAYLKPALKRGNVTLVNGFARK VVIENGRAVGVEIERRGRVETIRADREVIVSASSFNSPKLLMLSGIGPAAHLKDMGIE VKADRPGVGANLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQ FEACAFLRSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQAHVGYNLSKSRGNVTLR SADPHDDPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDFRGPEIQPGEKVETDE QIDAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYG NLNGPSIMTGEKAADHILGKTPLPRSNQEPWVNPRAAVSDR" misc_feature 783428..785074 /gene="betA" /locus_tag="AGROH133_04539" /note="choline dehydrogenase; Validated; Region: PRK02106" /db_xref="CDD:179368" misc_feature 783428..>783529 /gene="betA" /locus_tag="AGROH133_04539" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" misc_feature <784025..>784234 /gene="betA" /locus_tag="AGROH133_04539" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 784577..784990 /gene="betA" /locus_tag="AGROH133_04539" /note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199" /db_xref="CDD:191229" gene complement(785081..785380) /locus_tag="AGROH133_04540" /db_xref="GeneID:10266528" CDS complement(785081..785380) /locus_tag="AGROH133_04540" /codon_start=1 /transl_table=11 /product="Plasmid stabilization system protein" /protein_id="YP_004278073.1" /db_xref="GI:325292209" /db_xref="GeneID:10266528" /translation="MTYQLRYTEEALADFDRIYDFLIAYDINVAEKAIHAIRAGLDIL SDFPFSCRKASSENGLIRELLVPFGSSGYIVLFRIDGPETVTIAAVRHQREDDYH" misc_feature complement(785093..785368) /locus_tag="AGROH133_04540" /note="Plasmid stabilisation system protein; Region: Plasmid_stabil; cl11422" /db_xref="CDD:196226" gene complement(785377..785649) /locus_tag="AGROH133_04541" /db_xref="GeneID:10266529" CDS complement(785377..785649) /locus_tag="AGROH133_04541" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278074.1" /db_xref="GI:325292210" /db_xref="GeneID:10266529" /translation="MKTATLPSLRVTADFREAAESVLKDGETLSSFVEDSVRRQVEIR KSQAEFIARGLASLEQAERTGVYYSTDDVLSMMQRKLDAAKAAKRK" gene 785796..787139 /locus_tag="AGROH133_04542" /db_xref="GeneID:10266530" CDS 785796..787139 /locus_tag="AGROH133_04542" /note="Chloride channel, voltage gated; Chloride channel protein EriC" /codon_start=1 /transl_table=11 /product="chloride channel protein" /protein_id="YP_004278075.1" /db_xref="GI:325292211" /db_xref="GeneID:10266530" /translation="MPVDYKKLKMLRRSRVVWGSWRVWKPRAVFWIGALAVGIISVGF AWAADRAQHLFFSATSSGEWAFLLPLVVTPLGFTLCAWLALTVFPNAGGSGIPQAIAA RHLRDDADRSRLLSLKLAFGKVALTVVGLLSGASIGREGPTVQVGASIMLQAARWGGM AQAKGLILAGSAAGIAAAFNTPLAGIVFAIEEMSKTYESRANGLVLTAVILSGLASLA LVGSYTYFGTSSVMAKTMMDWLLVLVCGIGGGAFGALFSAGALRLSARIRRFAQAMPS RRMLAVAAACGLASAVIGIATDGATFGTGYEQARAAIEGQAAPAFFFIEKLAATFLAM MSGIPGGIFAPSLSVGAGFGSTMATLLGTSIGLGAIVGMAGYFAGVVQAPMTAFVIIL EMTGNHDGVIPIMVASMLGYLTSRLFSREPLYHGLSRVFIAQSIRAKRAAQAAET" misc_feature 785907..787070 /locus_tag="AGROH133_04542" /note="ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a...; Region: EriC_like; cd01034" /db_xref="CDD:79362" misc_feature 786018..787046 /locus_tag="AGROH133_04542" /note="Voltage gated chloride channel; Region: Voltage_CLC; pfam00654" /db_xref="CDD:189656" misc_feature order(786072..786086,786207..786221,786816..786830, 787065..787067) /locus_tag="AGROH133_04542" /note="putative ion selectivity filter; other site" /db_xref="CDD:79362" misc_feature 786213..786215 /locus_tag="AGROH133_04542" /note="putative pore gating glutamate residue; other site" /db_xref="CDD:79362" misc_feature 786369..786371 /locus_tag="AGROH133_04542" /note="putative H+/Cl- coupling transport residue; other site" /db_xref="CDD:79362" gene complement(787147..787899) /locus_tag="AGROH133_04554" /db_xref="GeneID:10266531" CDS complement(787147..787899) /locus_tag="AGROH133_04554" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278076.1" /db_xref="GI:325292212" /db_xref="GeneID:10266531" /translation="MKFAKRLLLAIAIIYLLPALASAGLWAMRDHPQGWRDARWSSSG TLPQAGADRQAAVYVFSAMTGGFKGSVASHAWIVLKKPGATAYDRYDKVGWGMPIRHN GYPADAYWYSNTPRQVVAIHGAAAEKLIPKIEQAIADYPYGKPGGYRIYPGPNSNTFV AHVLRSVPELGVVLPSDAVGRDYLPNGAFYHVADDWKDASLSLGGLFGISAGARSGFE VNFLGLVAGFDFSRPGVKIPGLGYFGVAGIRA" misc_feature complement(787351..787740) /locus_tag="AGROH133_04554" /note="Protein of unknown function (DUF3750); Region: DUF3750; pfam12570" /db_xref="CDD:153004" gene 787973..788965 /locus_tag="AGROH133_04557" /db_xref="GeneID:10266532" CDS 787973..788965 /locus_tag="AGROH133_04557" /note="L-asparaginase II" /codon_start=1 /transl_table=11 /product="L-asparaginase II protein" /protein_id="YP_004278077.1" /db_xref="GI:325292213" /db_xref="GeneID:10266532" /translation="MNNSVTVEVLRGSLVESRHQGLAVVVDGDGGVVFSAGDVERGVF PRSACKAMQALPLVESGAADAYGFGNRELALACSSHSGEDEHAALAASMLARAGRDVD TLECGAHWSSDQKTIIHQARTLEKPTALHNNCSGKHSGFICACCHTGTDPKGYVGYDH PLQREIRATMESLTGATLGHDNCGVDGCSIPTYAVPLKGLAHGFAKMATGRGLEAGRA QASRRLFDACMAEPFYVAGTGRTCTRLMQIAPGRIFAKTGAEGVFVAALPEKGIAMAV KCEDGTTRAAEAMIAAMLAKYFDGAENEALLAMANRQMRNWNGIHVGDIRVVGL" misc_feature 787973..788962 /locus_tag="AGROH133_04557" /note="L-asparaginase II; Region: Asparaginase_II; cl01842" /db_xref="CDD:154621" gene 789192..789812 /gene="gst" /locus_tag="AGROH133_04558" /db_xref="GeneID:10266533" CDS 789192..789812 /gene="gst" /locus_tag="AGROH133_04558" /EC_number="2.5.1.18" /note="Glutathione S-transferase, C-terminal-like" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase" /protein_id="YP_004278078.1" /db_xref="GI:325292214" /db_xref="GeneID:10266533" /translation="MFTLFFSPGSCSRASHIVLEESGLPYTAHRVNFAEGEQRSEAFL KINPKGRVPALATASGVLTETPAILAFIAQMAPEKKLAPLDDPFEFALMQAFNAFISS TVHVAHAHGRRGSRWASEDSSLADMKAKVPQTMTDCFELIEHGMLHGPWVLGTAYSVA DPYLFVMSGWLESDGVDIARFPKVHDHFRRMNERPAVQRALAGEKG" misc_feature 789195..789422 /gene="gst" /locus_tag="AGROH133_04558" /note="GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_N_Beta; cd03057" /db_xref="CDD:48606" misc_feature 789201..789806 /gene="gst" /locus_tag="AGROH133_04558" /note="glutathionine S-transferase; Provisional; Region: PRK10542" /db_xref="CDD:182533" misc_feature order(789213..789218,789231..789233,789237..789239, 789249..789254,789399..789401,789411..789413) /gene="gst" /locus_tag="AGROH133_04558" /note="C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature order(789222..789224,789342..789347,789381..789386) /gene="gst" /locus_tag="AGROH133_04558" /note="GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48606" misc_feature order(789342..789344,789378..789383,789387..789389, 789402..789404,789411..789413) /gene="gst" /locus_tag="AGROH133_04558" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48606" misc_feature 789453..789794 /gene="gst" /locus_tag="AGROH133_04558" /note="GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens...; Region: GST_C_Beta; cd03188" /db_xref="CDD:48115" misc_feature order(789453..789455,789462..789467,789474..789476, 789483..789485,789495..789497,789507..789509, 789534..789536,789570..789572,789579..789581, 789591..789593) /gene="gst" /locus_tag="AGROH133_04558" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature order(789459..789461,789504..789506,789666..789668, 789687..789689,789699..789701,789771..789773, 789777..789779,789789..789791) /gene="gst" /locus_tag="AGROH133_04558" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48115" misc_feature order(789492..789494,789504..789509,789516..789521, 789525..789527,789690..789692,789699..789701, 789708..789710) /gene="gst" /locus_tag="AGROH133_04558" /note="substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48115" gene complement(789910..790569) /gene="gst" /locus_tag="AGROH133_04559" /db_xref="GeneID:10266534" CDS complement(789910..790569) /gene="gst" /locus_tag="AGROH133_04559" /EC_number="2.5.1.18" /note="Glutathione S-transferase, C-terminal domain" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase" /protein_id="YP_004278079.1" /db_xref="GI:325292215" /db_xref="GeneID:10266534" /translation="MLTIYGVYRSRATRTLWLAGELGMEFKHVPVVQARRVADPLAAD APLNTLSPAFLAINPMGTIPCIEDDGMVLYESMAINLYLVRKYGGPLAPVDLKEDAAM LQWSFFAATEIETNSLKISSAIAEGLSESDAGKAVIDVAARLLRRPFRVLEQHLASHD YLVGDRFTVADLNVAEIVRYAQGHQPLFDAHPALKAWLERCQARTAFKSMWDSRAAEA A" misc_feature complement(789913..790566) /gene="gst" /locus_tag="AGROH133_04559" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature complement(790306..790566) /gene="gst" /locus_tag="AGROH133_04559" /note="GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins...; Region: GST_N_GTT1_like; cd03046" /db_xref="CDD:48595" misc_feature complement(order(790327..790332,790339..790341, 790507..790512,790519..790524,790528..790533, 790537..790539)) /gene="gst" /locus_tag="AGROH133_04559" /note="putative C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48595" misc_feature complement(order(790342..790347,790378..790386, 790537..790539)) /gene="gst" /locus_tag="AGROH133_04559" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48595" misc_feature complement(order(790327..790329,790336..790341, 790345..790350,790384..790386)) /gene="gst" /locus_tag="AGROH133_04559" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48595" misc_feature complement(789946..790278) /gene="gst" /locus_tag="AGROH133_04559" /note="Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and...; Region: GST_C_family; cl02776" /db_xref="CDD:194436" misc_feature complement(order(790030..790032,790042..790044, 790051..790056,790063..790065,790240..790242, 790261..790263)) /gene="gst" /locus_tag="AGROH133_04559" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48103" misc_feature complement(order(790117..790119,790249..790251, 790258..790263)) /gene="gst" /locus_tag="AGROH133_04559" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48103" misc_feature complement(order(790030..790032,790039..790041, 790213..790218,790225..790230,790240..790242)) /gene="gst" /locus_tag="AGROH133_04559" /note="substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48103" gene complement(790651..791166) /locus_tag="AGROH133_04560" /db_xref="GeneID:10266535" CDS complement(790651..791166) /locus_tag="AGROH133_04560" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_004278080.1" /db_xref="GI:325292216" /db_xref="GeneID:10266535" /translation="MSTEEDWNEDLPEDIKRIGNTMTRMRIMIGRRIIGRMALAKVAP GLELSHIDVLDILRRADGDVTVGAIAEGMRIDPSRGSRVVADMVGRGLLKRGVSQEDA RRSIVEITPLGTSLLQEMRRTKMSVIQDVMDGWPEEDVETFARLFDRFIDRFEARLSP DTDLLTDQKKS" misc_feature complement(790747..791034) /locus_tag="AGROH133_04560" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 791251..792840 /locus_tag="AGROH133_04561" /db_xref="GeneID:10266536" CDS 791251..792840 /locus_tag="AGROH133_04561" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004278081.1" /db_xref="GI:325292217" /db_xref="GeneID:10266536" /translation="MLIAHKLSQQNCRNSTRFFMDMSVAPVAPLVSDHRRRLIVFLFL MLAMFMATLDNQIVSTALPTIVGEFGALERFGWIGSAYLLATSAVMPVYGKLGDLFGR KYVMIAAVIIFTLGSLACGLAWSMDSLIAARVLQGLGGGGIMVSIFSVNADLFEPRER ARYQSYSSLTIMASGSVGPILGGTMSDLFGWRSIFLINLPLGLIVITGLIFLLPYRRP ARQPKIDYLGAVLLAATIASVVFWADSSELFGSLIAGPSLGIIAFAVIAAFLWVQVER RAPEPVVPLRLFKDSTFPLLMIVSLTSGGIGIGMVNYYALFLQTTTGLSPSHAGLFFI AVTGGIVMGSLSAGRLISITGVYKPFSVAGLTINVIAMLLFTQMHAGTPLWLIAILML AQGFAVGLGQQAPIIGVQNSAPKTDIGAASGAVTLTRMGGAAIAISVYGAIVTSSLKG VAVTIPGVGRIEELTPKMLSELPAASQAAVASLYSDAFTPLFFAAAATAAIGLAAALM LKPVRLPAAAQAAKPAESAGE" misc_feature 791407..792585 /locus_tag="AGROH133_04561" /note="D-galactonate transporter; Region: 2A0114; TIGR00893" /db_xref="CDD:162094" misc_feature 791407..792450 /locus_tag="AGROH133_04561" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(791413..791415,791422..791430,791434..791439, 791485..791487,791494..791499,791506..791508, 791518..791523,791527..791532,791668..791673, 791680..791685,791692..791697,791704..791706, 791740..791745,791752..791757,791773..791775, 791956..791958,791965..791970,791977..791982, 791989..791991,792031..792033,792043..792045, 792055..792057,792064..792066,792076..792078, 792232..792234,792241..792246,792253..792255, 792265..792270,792277..792279,792310..792312, 792319..792324,792331..792333,792340..792342) /locus_tag="AGROH133_04561" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 793067..794083 /locus_tag="AGROH133_04576" /db_xref="GeneID:10266537" CDS 793067..794083 /locus_tag="AGROH133_04576" /note="Predicted hydrolase of the metallo-beta- lactamase superfamily" /codon_start=1 /transl_table=11 /product="mRNA 3-end processing factor" /protein_id="YP_004278082.1" /db_xref="GI:325292218" /db_xref="GeneID:10266537" /translation="MNMKPEQLLNSTPKGLYCPPGDFYIDPVRPVARALITHGHSDHA RAGHGAVLATRQTLDIMRIRYGEDFCGSEQAVAFGETVEVNGVTVGFHPAGHVLGSAQ ISVEMNGMRIVASGDYKRGIDPTCTPFETVPCDVFITEATFGLPVFHHPLPRVEIGKL LTSIKQFPERTHLVGAYSLGKAQRVIRLLRDNGYADPIYIHGALARLCDYYVSQGIDL GDLHPATLEKSDPAIFKGAIVVGPPSAFQERWARRFNEPLIAFASGWMMVRQRAKQGG VELPLVISDHCDWPELLETIKEIGPQAVWVTHGREEALVRWCELQGVAAKPLHLVGYE DEGD" misc_feature 793067..794074 /locus_tag="AGROH133_04576" /note="Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]; Region: YSH1; COG1236" /db_xref="CDD:31429" misc_feature <793148..793495 /locus_tag="AGROH133_04576" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 793989..795710 /locus_tag="AGROH133_04577" /db_xref="GeneID:10266538" CDS 793989..795710 /locus_tag="AGROH133_04577" /EC_number="6.5.1.1" /note="catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase" /codon_start=1 /transl_table=11 /product="DNA ligase" /protein_id="YP_004278083.1" /db_xref="GI:325292219" /db_xref="GeneID:10266538" /translation="MAVKRRWCAGANCRALLPNRCILSVTKTRGIEMKAFATLLDRLV LTPSRNGKLKLLADYFRDTPDPDRGYGLAAIAGTLDLKSVKPAMLRELVLERMDEVLF RYSYDYVGDLAETISLVWGNIGGLDDSEAQDPRLGEVVTLMNSLGRTEVRGAVRDLLD RLDTSSRFAFLKLATGSLRIGVSARLARQALADFADKDIIEIETLWHGLTPPYTTLFA WLEGKSERPVLATPAIFHSVMLATPVADGDLDGLDPADYAAEWKWDGIRVQLSRAGET RKLYSRSGDDISGAFPDVLDAIDFEGVMDGELLIGGTARSNNLTRTFSDLQQRLNRKT VTAKMQDDYPAFIRAYDLLFDGESDIRAQTYLERRGRLSDIIEHAPHDRFDLSPLIGF STWDELNTLRAAPPDPVIEGVMIKRRDSAYQAGRAKGPWFKWKRDPYNIDAVMMYAQR GHGKRSSYYSDFTFGVWAEGEDGEQLVPVGKAYFGFTDAELEVLDKFVRDNTVERFGP VRAVRATPDFGFVLEVAFEGINRSNRHKSGVAMRFPRIARLRADKLPAEADRLATLVA MIDGVDG" misc_feature 794085..795695 /locus_tag="AGROH133_04577" /note="ATP-dependent DNA ligase; Validated; Region: PRK09247" /db_xref="CDD:181725" misc_feature 794682..795305 /locus_tag="AGROH133_04577" /note="Adenylation domain of putative bacterial ATP-dependent DNA ligases; Region: Adenylation_DNA_ligase_Bac1; cd07897" /db_xref="CDD:185708" misc_feature order(794766..794777,794781..794789,794829..794837, 794841..794843,794847..794849,794907..794909, 794943..794948,794955..794963,795036..795038, 795219..795221,795228..795230,795234..795236, 795279..795281,795285..795287,795291..795293) /locus_tag="AGROH133_04577" /note="active site" /db_xref="CDD:185708" misc_feature order(794772..794774,794781..794789,794829..794837, 794841..794843,794847..794849,794943..794948, 794955..794963,795219..795221,795285..795287, 795291..795293) /locus_tag="AGROH133_04577" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:185708" misc_feature 795303..795686 /locus_tag="AGROH133_04577" /note="The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit; Region: OBF_DNA_ligase_Arch_LigB; cd07972" /db_xref="CDD:153441" misc_feature order(795339..795353,795366..795368,795426..795431, 795435..795452,795576..795578,795582..795587, 795591..795593,795606..795617,795621..795623) /locus_tag="AGROH133_04577" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:153441" gene 795971..796936 /locus_tag="AGROH133_04578" /db_xref="GeneID:10266539" CDS 795971..796936 /locus_tag="AGROH133_04578" /EC_number="3.4.19.1" /note="Twin-arginine translocation pathway signal; Dipeptidyl aminopeptidases/acylaminoacyl- peptidases" /codon_start=1 /transl_table=11 /product="aminopeptidase protein" /protein_id="YP_004278084.1" /db_xref="GI:325292220" /db_xref="GeneID:10266539" /translation="MPDKRFLSSAFGQEESGATLRSLTRRNLLVGAMGLSAAALLPAG AKAGIPTPEVLPLEKQDYGEARKRFHTHLLRKMSAPEKSSPLGTPPGAERVTYRGGPD GSIELVAWLSHYQPSTVLKPAVLFLHGGNATGDGHWAMMKPYWEAGFVVLLPSFRGEN GQNGNYSGFYDETADALAAATYLESLPGIDRKRFFIAGHSNGGTLTLLAAMSRKFRAA APISAGVNSWRYFNRYSDELCFDETDEREFIMRSSVCFGPSLKCPALLLRGTEERPFD ADHQLFVDRAVYSGFKVDKKLLPGTHNGVVPGAVTESIRFFNEFA" misc_feature <796124..796930 /locus_tag="AGROH133_04578" /note="Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]; Region: DAP2; COG1506" /db_xref="CDD:31695" misc_feature 796406..>796696 /locus_tag="AGROH133_04578" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(796982..799702) /locus_tag="AGROH133_04580" /db_xref="GeneID:10266540" CDS complement(796982..799702) /locus_tag="AGROH133_04580" /EC_number="3.6.1.-" /note="ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; Cation transport ATPase" /codon_start=1 /transl_table=11 /product="P type cation metal transporter, ATPase component" /protein_id="YP_004278085.1" /db_xref="GI:325292221" /db_xref="GeneID:10266540" /translation="MNISTRGSLNGESGDLTFTVGGMDCGSCAAKIETALSRLPGVAD VKVSVARERLNLSLAEDKTSVAKIEDTLRKLGFKPALLPQDKAPREKIAAEHHDHGHD HDHSSCSGHHHAEAAPSIEQNNALTFSVGGMDCGSCAAKIETALSRLPGVADVKVSVA RERLNLSLADNKTPVDKIEDTLRKLGFKPALLPQEKTALGKVEEHNHDHADDHDHGSC GGHHGHDHDHKHDHSGHDHSSHDHADHDHSSCGGHHHDDAKHAHSHGSVETVAQSADI GHAHGADEKGVWWRTAKARNTFTGTILVAVAYAAELGFPAWGSYAFIVATLVTLFPIA RNAFNAARFGAIFTIEMLMTIAAIGAIIIGEAEEAAIVVLLFSVGELLEGFAAARARS GIKALGSLLPKTALVEENGTLRQVAADKVRIGQVVVARPGDRIAADGVVMEGESSVDE SPMTGESIPVAKEKGARVFAGSINHDGSLRIRVDRAPEDNTIARIITLVEEAQDARAP TERFIQNFSRYYMPLIVAISALTIVVPPLVGLGDWDTWIYRGLALLLIGCPCALVISV PAAIASSLSAAARHGMLVKGGAVIEMLARTETVAFDKTGTLTLGEPVVTDVVALDGNE AGLIAQAATIENESSHPLARAIVNHANKAGVTPLPGSEIKAISGRGMQGTVGGKRLFI GAPRFATEVGTVSTELAERISALESEGKTVAVVMAEGAASGLFAMRDEPRKDAAEGIK ALKEMGISSLMLSGDNARTAKAIGNKLGLEARGELLPQNKVEEIRKLAQKKTVVMVGD GINDAPALAAASVGVAIGSGTDVAMEAADAALMRNNVGDAARLIGLSRATMRNIHQNV TIALGLKAVFLVTTVTGLSGLWLAVFADTGATVLVTANAMRLLGYFKKSA" misc_feature complement(799463..799654) /locus_tag="AGROH133_04580" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature complement(order(799619..799621,799628..799636)) /locus_tag="AGROH133_04580" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature complement(799133..799324) /locus_tag="AGROH133_04580" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature complement(order(799289..799291,799298..799306)) /locus_tag="AGROH133_04580" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature complement(797006..798802) /locus_tag="AGROH133_04580" /note="zinc/cadmium/mercury/lead-transporting ATPase; Provisional; Region: zntA; PRK11033" /db_xref="CDD:182916" misc_feature complement(797930..798589) /locus_tag="AGROH133_04580" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature complement(797297..797527) /locus_tag="AGROH133_04580" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 799870..800778 /locus_tag="AGROH133_04588" /db_xref="GeneID:10266541" CDS 799870..800778 /locus_tag="AGROH133_04588" /note="ErfK/YbiS/YcfS/YnhG; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278086.1" /db_xref="GI:325292222" /db_xref="GeneID:10266541" /translation="MTALLLKNCRRAASLAVIALLPFLSGCLFVTDTSRMNPDVFVQE TAPVFNFNSVSSNRQPELPPQPGQLSTRPPDLFRTRFHQEYGPPVRGQGLSAPQVQGL NVPQAQGQAMAYGLPVSNPLHRVMYGPIRDDGRSLPAIPYGRIDPRYLRQEVSYQTAE APGTIVVDTKQHFLYLVQPGGKAIRYGVGLGRDGYAWSGRGKIQWKAKWPRWTPPDEM VRRQPELTSISAANGGMTPGLNNPLGARALYIFKDGKDTLYRVHGTPDWQSVGKATSS GCVRMLNQDVIDLYERVPKGAQIVVI" misc_feature 800353..800772 /locus_tag="AGROH133_04588" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene 800938..801663 /locus_tag="AGROH133_04590" /db_xref="GeneID:10266542" CDS 800938..801663 /locus_tag="AGROH133_04590" /note="ErfK/YbiS/YcfS/YnhG; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278087.1" /db_xref="GI:325292223" /db_xref="GeneID:10266542" /translation="MTSTDTDLSRRTFLSLLGISSASLLAGCASSGTGEAIRQQASSI GSDFRQMFSSGVSDAELAVMYGSVEDGGYVIPAVPYQKIDRRYYRQRVVDPTGERPGT VVVDTRSRFLYVVEQGGSAMRYGVGIGRDGFAWSGEGVIQWRQKWPKWTPPDEMVARQ PELVKYSSKNGGMPPGLKNPLGARALYIFQNGKDTLYRLHGSPEWNSIGKAVSSGCVR LMNQDVIDLYDRVPQKARVVVWQ" misc_feature 801109..801660 /locus_tag="AGROH133_04590" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: ErfK; COG1376" /db_xref="CDD:31566" misc_feature <801508..801654 /locus_tag="AGROH133_04590" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene complement(801718..802176) /gene="ohrR" /locus_tag="AGROH133_04592" /db_xref="GeneID:10266543" CDS complement(801718..802176) /gene="ohrR" /locus_tag="AGROH133_04592" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_004278088.1" /db_xref="GI:325292224" /db_xref="GeneID:10266543" /translation="MGAESDDTNLESLLRLDQQICFALYGAAHAFTRAYKPLLDPIGL TYPQYLVMMALWEKETSTVKALGEMLGLDSGTLSPLLKRLEHAGLITRKRGTVDERQV LVAVTPKGADLKKEGVKIMAAIGDATGCGLEELVQLRDQVNALKENIARP" misc_feature complement(801724..802098) /gene="ohrR" /locus_tag="AGROH133_04592" /note="Transcriptional regulators [Transcription]; Region: MarR; COG1846" /db_xref="CDD:32031" misc_feature complement(<801829..802062) /gene="ohrR" /locus_tag="AGROH133_04592" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 802370..802792 /gene="ohr" /locus_tag="AGROH133_04593" /db_xref="GeneID:10266544" CDS 802370..802792 /gene="ohr" /locus_tag="AGROH133_04593" /note="OsmC-like protein; Organic hydroperoxide reductase" /codon_start=1 /transl_table=11 /product="organic hydroperoxide resistance protein" /protein_id="YP_004278089.1" /db_xref="GI:325292225" /db_xref="GeneID:10266544" /translation="MPILYTTKASATGGRAGNAKSEDGVLDVTLTVPKELGGDGARGT NPEQLFAAGYSACFLGALKAVAGKQKVKIPEDTTVTATVGIGPREDGTGFGIEVSLKV NIPGLEREKAEELVAAAHIVCPYSHAMRTSTEVPVSVA" misc_feature 802379..802786 /gene="ohr" /locus_tag="AGROH133_04593" /note="OsmC-like protein; Region: OsmC; cl00767" /db_xref="CDD:193933" gene 802889..803272 /locus_tag="AGROH133_04594" /db_xref="GeneID:10266545" CDS 802889..803272 /locus_tag="AGROH133_04594" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278090.1" /db_xref="GI:325292226" /db_xref="GeneID:10266545" /translation="MNIHAKTAMDPASQGRVVTKAVMTAAERLGLNAARTADILGVSA PTVSRMKRLDFLLEPGAKSFELAVLLIRVFRSLDAIAGGDEAVAKNWLRNHNTALNAV PAERLTTITGLIDVLSYLDARRAPV" misc_feature 803108..803269 /locus_tag="AGROH133_04594" /note="Protein of unknown function (DUF2384); Region: DUF2384; pfam09722" /db_xref="CDD:150402" gene 803232..803993 /locus_tag="AGROH133_04596" /db_xref="GeneID:10266546" CDS 803232..803993 /locus_tag="AGROH133_04596" /note="RES domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278091.1" /db_xref="GI:325292227" /db_xref="GeneID:10266546" /translation="MSSPIWTPDALLSEKRAASGKYWRLVEAQHQVSTMKLVDTVEEQ SLLEDILEASKRPFPPECAGLDYLLATPFRYGAAYPHGSRFRRAGFTEGVYYAAAKVE TALAEMAFYRLLFYAESPGTPLPANPADYSAFAARIATDAALDLTQPELNRDEALWAD LQNYEPCQALAEQARLAKIEAILYRSVRDPAGGLNIAVLSPKAFAEKMPVERMSWRIR LSKTGVQALCEFPMRRTGFAVADFSGDPRLASLLG" misc_feature 803445..803891 /locus_tag="AGROH133_04596" /note="RES domain; Region: RES; cl02411" /db_xref="CDD:194305" gene complement(804036..805667) /locus_tag="AGROH133_04597" /db_xref="GeneID:10266547" CDS complement(804036..805667) /locus_tag="AGROH133_04597" /note="ABC transporter related; ATPase components of various ABC-type transport systems, contain duplicated ATPase" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004278092.1" /db_xref="GI:325292228" /db_xref="GeneID:10266547" /translation="MQLVCRCACFHDGSPRTDIPYCIVADHGSSQIRFARDNFMTLIT LRNLGIILGKPLFSNLGLTVNAGDRIGIVAANGHGKSTLLNCLAGELDATSGDITRLR GLTQSIVHQHLPSPLLEKTMRDAVLSALPADEIDNESWRADIILDAMLVPEPYRHRHL KELSGGWQRLAMLARAWITEPDVLLLDEPTNHLDLEKINVLESWLGQLPRDTAVVIVS HDRAFLDNVTKTTLFLRPENSALFRLPYGHARTALEEEDAADERRFQRDMKTAQQLRR QAAKLNNIGINSGSDLLTVKTKQLRQRAEKLEENARPAHSERSAGKIQLANRGTHAKV LVTLEDVPVSTPDGTLLFRTGRQFVHQGDRIVILGRNGVGKTRLISLLKAAVMDEGQI QDGIKATPSLVAGYVDQSLAEIDDDSTPFALMTRRFDIGDQRIHGLLAGAGIDMEMQK RRIATLSGGQKARLAMLALRLAEPNFYLLDEPTNHLDIDGQEALEAEIINRSASCVFV SHDRSFVRAVGTRFWLIDKRRLVEVDDPEAFFASA" misc_feature complement(804084..805550) /locus_tag="AGROH133_04597" /note="ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488" /db_xref="CDD:30834" misc_feature complement(804960..805541) /locus_tag="AGROH133_04597" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" misc_feature complement(804081..804662) /locus_tag="AGROH133_04597" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" gene complement(805924..806346) /locus_tag="AGROH133_04598" /db_xref="GeneID:10266548" CDS complement(805924..806346) /locus_tag="AGROH133_04598" /note="DGPF domain; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278093.1" /db_xref="GI:325292229" /db_xref="GeneID:10266548" /translation="MRVIVFVKATRSSEDGIMPTTELMEAMGKFNEELVNAGIMLSGD GLHPSSKGKRVVFDGDSRSVIDGPFPHTNELVAGFWLWKVKDMDEAVEWVKRCPNPML ERSEIEIRPMFEMEDFGDAVTPEMAEHVEKLRERVAKQ" misc_feature complement(805978..806346) /locus_tag="AGROH133_04598" /note="YCII-related domain; Region: YCII; cl00999" /db_xref="CDD:186294" gene complement(806447..806893) /locus_tag="AGROH133_04599" /db_xref="GeneID:10266549" CDS complement(806447..806893) /locus_tag="AGROH133_04599" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_004278094.1" /db_xref="GI:325292230" /db_xref="GeneID:10266549" /translation="MSNASVIPFSATLLVRDSCLCLHAQRAARALARLFDNALKPVGI NNGQFSLLMSLNRPEPPPMGPVANLLAMDRTTLTAALKPLERRGLVSIEQDPKDKRGK RLRLTVEGMAVLTAAFPIWQQTHAEIEARIGSGDPDRLRRDLIDLG" misc_feature complement(806498..806776) /locus_tag="AGROH133_04599" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 807044..807772 /locus_tag="AGROH133_04600" /db_xref="GeneID:10266550" CDS 807044..807772 /locus_tag="AGROH133_04600" /note="Protein of unknown function DUF899, thioredoxin-like; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278095.1" /db_xref="GI:325292231" /db_xref="GeneID:10266550" /translation="MSHPVVSNEEWLAARRDLLVKEKELTRARDRLNEARRALPWEEV TKDYIFDAPSGPKSLKELFGNCSQLIVYHFMLAPDWEEGCTGCSFFADHVDGAMVHLK HGDAGFVAVSRAPLEKIEAYKKRMGWKFPWVSANGSDFNYDYQASFRDEDIESGAITY NYREIEPMGDLKDLHGVSIFAKGEDGRIYHSYSAYARGMEETLGTLMLLDLVPKGRNE EGVMDWVRRHDQYEDEPKAASCCH" misc_feature 807044..807769 /locus_tag="AGROH133_04600" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:193797" gene 807799..808287 /locus_tag="AGROH133_04601" /db_xref="GeneID:10266551" CDS 807799..808287 /locus_tag="AGROH133_04601" /note="Protein of unknown function DUF1579" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278096.1" /db_xref="GI:325292232" /db_xref="GeneID:10266551" /translation="MENAKPQKEHAFLGRIVGDWVMTASSGHEGYDPDDPAQRFIETV SSIGGLWIIGHGTGKMPDGTEMTAVITVGFDPAKGHFVGTWVGSMMTNLWVYKAWLED DGKTLTLEAEGPAFDGSGRIDTYHDVLVLHDDNNRSFSGSVRQPDGSFKTFMTSEFQR KA" misc_feature 807808..808281 /locus_tag="AGROH133_04601" /note="Protein of unknown function (DUF1579); Region: DUF1579; pfam07617" /db_xref="CDD:148951" gene 808388..809170 /locus_tag="AGROH133_04602" /db_xref="GeneID:10266552" CDS 808388..809170 /locus_tag="AGROH133_04602" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Predicted enzyme related to lactoylglutathione lyase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278097.1" /db_xref="GI:325292233" /db_xref="GeneID:10266552" /translation="MSDTHGKFIWVELMTPEMEQGARFYGHVAGWQTKDFGSPEMPYL VLEADGKGMGGIMELTEEHKGQGIPPNWTGYVGVDDVDATAKLFAEKGGSVRRPPQDI PEIGRFAVVADPSGAVLCIMTPLPMETGGFPQETQNLPGHVGWYELATNNVDDAIAFY GEVFGWTKDHDFDMGAEMGPYRIFAHNGKVVGGMMKCMAGAPTCYWGYYFNVDGIDDA ITRVSTGGGKVVNGPMEVPGESWIVNCQDPQGAFFSLLSQKK" misc_feature 808409..808756 /locus_tag="AGROH133_04602" /note="N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains; Region: SgaA_N_like; cd07247" /db_xref="CDD:176671" misc_feature 808814..809158 /locus_tag="AGROH133_04602" /note="N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains; Region: SgaA_N_like; cd07247" /db_xref="CDD:176671" gene complement(809217..810113) /locus_tag="AGROH133_04603" /db_xref="GeneID:10266553" CDS complement(809217..810113) /locus_tag="AGROH133_04603" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004278098.1" /db_xref="GI:325292234" /db_xref="GeneID:10266553" /translation="MNVDLNALSTFCMVAEERNFRATADRLGVTRSAVSQTIRRLEET MGIALVQRTTRSVSLTEAGQQLYADVSPSISNLMQATQAASSLSGTPRGQLRLAVSSI AERFLSGPLLARFAEIHPEVQLDIVVTDEEFDIVAEHYDAGVRLGELIAQDMIAVPVS GPQRQLAVCSPQYRDRVTLPTQPRELIHHKCIGWRPRPDVAPYRWEFAENGREFAVAV QPDFTTNDMQLMIKLACAGAGITFGMEETFRPYLESGQLVSMLEDHSPTFAGFYLYYP NRRHLAPKLRAFIDHVRLPRNR" misc_feature complement(809235..810104) /locus_tag="AGROH133_04603" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(809922..810101) /locus_tag="AGROH133_04603" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(809238..809843) /locus_tag="AGROH133_04603" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474" /db_xref="CDD:176163" misc_feature complement(order(809301..809303,809382..809384, 809433..809435,809625..809627,809634..809636, 809676..809678,809793..809795,809805..809807)) /locus_tag="AGROH133_04603" /note="putative effector binding pocket; other site" /db_xref="CDD:176163" misc_feature complement(order(809406..809408,809415..809420, 809439..809453,809544..809546,809730..809750, 809754..809756,809766..809768,809775..809780, 809784..809789,809799..809804)) /locus_tag="AGROH133_04603" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176163" gene 810236..810958 /locus_tag="AGROH133_04605" /db_xref="GeneID:10266554" CDS 810236..810958 /locus_tag="AGROH133_04605" /EC_number="1.1.1.100" /note="Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase family protein" /protein_id="YP_004278099.1" /db_xref="GI:325292235" /db_xref="GeneID:10266554" /translation="MTLNKVILITGASSGIGEGIARELAAAGAKLVLGARRMDRLQAL ADELRQTGAEVVVHPLNVTERQSVEDFAEAGRKAFGRIDVIVNNAGIMPLSLMSSLKV DEWDRMIDVNIKGVLYGVAAVLPEMTARASGHIINIASIGALAVSPTAAVYCATKFAV RAISDGLRQENRDLRVTCIHPGVVESELADTITDPAAAELMQSYRAIALKPDAIGRAV RYAIEQPDDVDVNEIVVRPTAA" misc_feature 810236..810943 /locus_tag="AGROH133_04605" /note="short chain dehydrogenase; Provisional; Region: PRK12937" /db_xref="CDD:171821" misc_feature 810248..810952 /locus_tag="AGROH133_04605" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(810266..810268,810272..810277,810281..810283, 810338..810346,810497..810505,810647..810655, 810692..810694,810704..810706,810776..810787) /locus_tag="AGROH133_04605" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(810569..810571,810653..810655,810692..810694, 810704..810706) /locus_tag="AGROH133_04605" /note="active site" /db_xref="CDD:187535" gene 810973..811323 /locus_tag="AGROH133_04606" /db_xref="GeneID:10266555" CDS 810973..811323 /locus_tag="AGROH133_04606" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278100.1" /db_xref="GI:325292236" /db_xref="GeneID:10266555" /translation="MKIVSTSLALVLATAAADTGHHQEDRAVKGNMDKMAQTESHPYI GMWVTGDGHIRQELLPDGRYDEARGQRKSAYQGRYEVRGNHIDYWDDTGFTADGEFID DVLYHGGMIFYREP" misc_feature 811084..811317 /locus_tag="AGROH133_04606" /note="Agrobacterium tumefaciens protein Atu4866; Region: Atu4866; pfam11512" /db_xref="CDD:151949" gene complement(811384..812946) /locus_tag="AGROH133_04608" /db_xref="GeneID:10266556" CDS complement(811384..812946) /locus_tag="AGROH133_04608" /note="Protein of unknown function DUF853, NPT hydrolase ; helicase" /codon_start=1 /transl_table=11 /product="ATP-binding protein" /protein_id="YP_004278101.1" /db_xref="GI:325292237" /db_xref="GeneID:10266556" /translation="MLQDGQIYIGTSRNPDDSLNKGEYLELKFGNRHGLITGATGTGK TVTLQVLAEGFSQAGVPVFCADIKGDLSGIAAQGETKDWVQKRAEQIGFTDFSYGKSP VIFWDLYGEKGHRVRATIAEMGPLLLARLMDASEAQEGVLNIAFKIADQGGLPLLDLK DLQSLLNYMGENASALSSQFGLISKTSVGSLQRGLLVLEQQGAANFFGEPALNIADIM RVGTDGRGTVSVLAADKLMMNPRLYATFLLWMLSELFEELPEVGDPEKPRLVFFFDEA HLLFNDAPRVLVERVEQVVRLIRSKGVGVYFVTQNPLDVPETVLAQLGNRVQHALRAY TPREQKAVRTAADTFRQNPAFNTADIITTLGTGEALISTLHDKGAPSIVERTLVRPPS GRVGPLTDAERKLLMDTGPLAGQYDRDVDRESAFEILNARAQKAAEAEAAKRAEEENA SSQSDSASGRWRLPGFGDEEPTKASTTGARKTSGYQRETVIEAAMKSAARSVATSVGR AIVRGILGSLKR" misc_feature complement(<812740..812937) /locus_tag="AGROH133_04608" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(811387..812916) /locus_tag="AGROH133_04608" /note="Bacterial protein of unknown function (DUF853); Region: DUF853; pfam05872" /db_xref="CDD:114590" gene 813118..813261 /locus_tag="AGROH133_04609" /db_xref="GeneID:10266557" CDS 813118..813261 /locus_tag="AGROH133_04609" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278102.1" /db_xref="GI:325292238" /db_xref="GeneID:10266557" /translation="MMAMKKNRFMKVAAPACRPLECGMRLFYVDVNVSYSVLASFFNR RQE" gene 813258..813650 /locus_tag="AGROH133_04610" /db_xref="GeneID:10266558" CDS 813258..813650 /locus_tag="AGROH133_04610" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278103.1" /db_xref="GI:325292239" /db_xref="GeneID:10266558" /translation="MNEVVDQIAAKAGIDPALAEKAVGMILGFLQREAADGPIARMIE AIPGASDLVAQYNGEGAGGGGLLGGLMSAIGGGGIMGLGQQLMSQGIGMSEITTLAKE TIAVARQHAGDETVDQVIASVPGLSQFA" gene complement(813660..814091) /locus_tag="AGROH133_04611" /db_xref="GeneID:10266559" CDS complement(813660..814091) /locus_tag="AGROH133_04611" /note="HxlR-like helix-turn-helix; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="HxlR family transcriptional regulator" /protein_id="YP_004278104.1" /db_xref="GI:325292240" /db_xref="GeneID:10266559" /translation="MKRYAADPMIENRRKSPPPTETDPVIEALVEDIIAKVADKWTML ILEVLEEHGTLRFTQIGRLVGTISQKMLTKTLRQMESDGLVRRTVHPVIPPHVDYGLT SLGETLGSAFCGVWIWAETHHAEIEEARRRFNEQPPRPAIE" misc_feature complement(813684..814004) /locus_tag="AGROH133_04611" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 814195..814953 /locus_tag="AGROH133_04612" /db_xref="GeneID:10266560" CDS 814195..814953 /locus_tag="AGROH133_04612" /EC_number="1.1.1.100" /note="Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_004278105.1" /db_xref="GI:325292241" /db_xref="GeneID:10266560" /translation="MKTTGNTILITGGGSGIGRALAEAFHRLGNKVVISGRRQNVLDE VTAANPGMAAMVMDATDAEGIRSFADNLIKTHPTLNAVINNAGIMRPEDIASAPDYLD TAEETIATNLLAPIRLTAALLPHFLKQPEATVLTVSSGLAFVPMVVTPTYSATKSAIH AYSVALREQLKETSVEVIEIVPPYVQTTLMGEGQASDERAMPLEAFISEVMDILGGRP DEKEVVVERCKPLRFAAQNGNFDQVFSMVNGMHP" misc_feature 814249..814938 /locus_tag="AGROH133_04612" /note="Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]; Region: DltE; COG3967" /db_xref="CDD:33748" misc_feature 814249..814875 /locus_tag="AGROH133_04612" /note="classical (c) SDR, subgroup 2; Region: SDR_c2; cd05370" /db_xref="CDD:187628" misc_feature order(814300..814308,814363..814371,814447..814455, 814522..814524,814603..814611,814648..814650, 814660..814662,814738..814749,814753..814758) /locus_tag="AGROH133_04612" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187628" misc_feature order(814525..814527,814609..814611,814648..814650, 814660..814662) /locus_tag="AGROH133_04612" /note="active site" /db_xref="CDD:187628" gene 815023..815829 /locus_tag="AGROH133_04613" /db_xref="GeneID:10266561" CDS 815023..815829 /locus_tag="AGROH133_04613" /note="AraC protein, arabinose-binding/dimerisation; AraC-type DNA-binding domain-containing proteins" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004278106.1" /db_xref="GI:325292242" /db_xref="GeneID:10266561" /translation="MGSRQFLMPKTAMPGIAAVVADSDRSFPRHMHDQFGIGLVGRGA QKSLSGRGMVEAEAGHVITVNPGEVHDGIPLGEGGRAWRMIYLDIDIVQAAITDIIEK DHGFFEFAYPVDIRPLADRFRALFSAVTATDRPGDTLRCDETLLMLLVGAMETVATPR ETAAPDSIRRAKSRIDDDPARPLRLTDLAQEAGMSQFRFLRSFSKTTGLTPHSYLLQR RLHLARGALAKGAPPADVAFFAGFSDQSHLNRFFARQFGVTPAAYRAAVS" misc_feature 815062..815469 /locus_tag="AGROH133_04613" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" misc_feature 815545..815670 /locus_tag="AGROH133_04613" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" misc_feature 815566..815814 /locus_tag="AGROH133_04613" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature <815722..815814 /locus_tag="AGROH133_04613" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 815955..816566 /gene="rhtB" /locus_tag="AGROH133_04615" /db_xref="GeneID:10266562" CDS 815955..816566 /gene="rhtB" /locus_tag="AGROH133_04615" /note="Lysine exporter protein (LYSE/YGGA); Putative threonine efflux protein" /codon_start=1 /transl_table=11 /product="RhtB family transporter" /protein_id="YP_004278107.1" /db_xref="GI:325292243" /db_xref="GeneID:10266562" /translation="MTPEFLITSLIIAASPGTGVVYTLAAGLSQGSKASVVTAFGCTL GIVPHLLAAITGLAAILHASALAFGVIKYLGVAYLLYMAWNTLREDGSLKIDDKQEHR KAGRVIGEAILINLLNPKLSIFFFAFLPQFIAPEEVSPTWRMVDLGLIFMAMTFLVFA LYGCFAASVRRQVVARPAVLTWLRRSFAAAFVALGAKLALTQR" misc_feature 815967..816515 /gene="rhtB" /locus_tag="AGROH133_04615" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene complement(816589..817416) /locus_tag="AGROH133_04621" /db_xref="GeneID:10266563" CDS complement(816589..817416) /locus_tag="AGROH133_04621" /EC_number="1.-.-.-" /note="Aldo/keto reductase family; Aldo/keto reductases, related to diketogulonate reductase" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="YP_004278108.1" /db_xref="GI:325292244" /db_xref="GeneID:10266563" /translation="MYDVNANGANIPALGFGTFRIPEEDIRRILPEALKLGFRHVDTA QIYKNEGAVGEVIAKSGISRHDIFLTTKVWVDRYRHADFLASVDESLQKLKTDYVDLL LLHWPKSDVPLAERIGALNDVRKAGKVRNIGISNFNVALTEEAVKLSDTPLATNQIEY HPYLDQTKVIAAARKHGLSVTAYYLMADGKVPDDSVLKDIGARHGKTAAQVALRWAVQ QPDVVALSKTATESRLKENFDIFDFALSEEEMQAIHALAKPDGRIVNPGHLAPDWDD" misc_feature complement(816649..817416) /locus_tag="AGROH133_04621" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature complement(816643..817380) /locus_tag="AGROH133_04621" /note="Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248" /db_xref="CDD:189468" misc_feature complement(order(816706..816711,816718..816720, 816733..816744,816790..816792,816853..816870, 816946..816948,817009..817014,817099..817104, 817201..817203,817276..817278,817291..817293, 817360..817368)) /locus_tag="AGROH133_04621" /note="active site" /db_xref="CDD:119408" misc_feature complement(order(817102..817104,817201..817203, 817276..817278,817291..817293)) /locus_tag="AGROH133_04621" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene 817555..818313 /locus_tag="AGROH133_04622" /db_xref="GeneID:10266564" CDS 817555..818313 /locus_tag="AGROH133_04622" /note="Winged helix repressor DNA-binding; Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="YP_004278109.1" /db_xref="GI:325292245" /db_xref="GeneID:10266564" /translation="MVKRRRWHDRNVEEPRVSRSQRLLDLLQILRAHRMPVSGTALAA QTGVSLRTLYRDIATLQAQGADIEGEAGVGYVLRPGFLLPPLMFSQQEIEALVLGSRW VAGRADEGLAQAARAALVKIAAVLPDALREELDNSTLLVGPGQAMATIHVDLAAIRDI IRKESKVVMTYRDEKGELTERVIWPFALAFFDLVRVVLAWCETRQDFRSFRADRIESF NPLDKRYPRRRQSLLKEWREREKKRRQQNHADKN" misc_feature 817594..>818244 /locus_tag="AGROH133_04622" /note="Predicted transcriptional regulator [Transcription]; Region: COG2378" /db_xref="CDD:32525" misc_feature 817618..817779 /locus_tag="AGROH133_04622" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 818363..818731 /locus_tag="AGROH133_04624" /db_xref="GeneID:10266565" CDS 818363..818731 /locus_tag="AGROH133_04624" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278110.1" /db_xref="GI:325292246" /db_xref="GeneID:10266565" /translation="MTHPDFTILYVDNPPASTEFYKALLGAEPVEASPTFSLFVLQNG MKLGLWSRHTVEPKASVAGGGGELAFRVESGAQVDEAFADWKTKGIAILQQPGTMDFG YTFTAADPDGHRLRVYAFAG" misc_feature 818378..818719 /locus_tag="AGROH133_04624" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_11; cd07261" /db_xref="CDD:176682" misc_feature order(818378..818392,818429..818443,818453..818455, 818465..818470,818483..818485,818489..818494, 818498..818503,818510..818512,818543..818545, 818552..818578,818600..818605,818612..818617, 818639..818644,818651..818653,818657..818659, 818663..818665,818672..818674,818678..818680, 818702..818704,818708..818716) /locus_tag="AGROH133_04624" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:176682" gene complement(818840..819610) /gene="tam" /locus_tag="AGROH133_04625" /db_xref="GeneID:10266566" CDS complement(818840..819610) /gene="tam" /locus_tag="AGROH133_04625" /EC_number="2.1.1.144" /codon_start=1 /transl_table=11 /product="Trans-aconitate methyltransferase" /protein_id="YP_004278111.1" /db_xref="GI:325292247" /db_xref="GeneID:10266566" /translation="MAWSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNS TELLTDRYGVNVITGIDSDDDMLEKAADRLPNTRFGKADLGNWRPSQKADLLYANAVF QWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHRAMEETGADGPWKDKFADGRLR RKPLPAPSAYFDALTPKSARVDVWHTIYNHPMKDAESIVEWVKGTGLRPYLAAAGEEH REAFLNDYTRRIAAAYPPMADGRLLLRFPRLFVVAVKK" misc_feature complement(818843..819610) /gene="tam" /locus_tag="AGROH133_04625" /note="trans-aconitate 2-methyltransferase; Provisional; Region: PRK01683" /db_xref="CDD:179319" misc_feature complement(819227..819523) /gene="tam" /locus_tag="AGROH133_04625" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(819314..819316,819359..819367, 819425..819430,819482..819502)) /gene="tam" /locus_tag="AGROH133_04625" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 820004..820885 /gene="ilvE" /locus_tag="AGROH133_04626" /db_xref="GeneID:10266567" CDS 820004..820885 /gene="ilvE" /locus_tag="AGROH133_04626" /EC_number="2.6.1.42" /note="Aminotransferase, class IV; Branched-chain amino acid aminotransferase/4- amino-4-deoxychorismate lyase" /codon_start=1 /transl_table=11 /product="branched-chain amino acid aminotransferase" /protein_id="YP_004278112.1" /db_xref="GI:325292248" /db_xref="GeneID:10266567" /translation="MTVDTAPRSTTWTYVDGQWLPGNPPLIGPTSHAMWLASTVFDGA RWFDGVAPDLDLHCQRVNRSATNMGMKPTMTAEEIEALALEGINKFDGKTEIYIKPMY WAEHGSPGSVVAPDANSTRFALCLFEAPMNAGASLTLTVSPLRRPSPETAMTDAKAGS LYPNSGRAILEARARGFDNALMCDMNGNVAESASSNVFMVKDGVVFTPVPNRTFLAGI TRSRVMSLLRQAGFEVREATLSVEDFRGADEIFCSGNYSKVSPVVKLDDRALQAGPVA RKALDLYMDWARLGADV" misc_feature 820082..820867 /gene="ilvE" /locus_tag="AGROH133_04626" /note="PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate...; Region: PLPDE_IV; cl00224" /db_xref="CDD:197404" misc_feature order(820100..820105,820109..820114,820118..820120, 820124..820126,820202..820204,820298..820300, 820304..820306,820370..820372,820478..820480, 820493..820495,820499..820501,820511..820513, 820553..820555) /gene="ilvE" /locus_tag="AGROH133_04626" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29567" misc_feature order(820124..820126,820181..820183,820472..820474, 820574..820576,820655..820660,820766..820768) /gene="ilvE" /locus_tag="AGROH133_04626" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:29567" misc_feature 820172..820852 /gene="ilvE" /locus_tag="AGROH133_04626" /note="Aminotransferase class IV; Region: Aminotran_4; pfam01063" /db_xref="CDD:189826" misc_feature order(820181..820183,820472..820474,820574..820576) /gene="ilvE" /locus_tag="AGROH133_04626" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:29567" misc_feature 820472..820474 /gene="ilvE" /locus_tag="AGROH133_04626" /note="catalytic residue [active]" /db_xref="CDD:29567" gene 821146..823494 /gene="mcpC" /locus_tag="AGROH133_04627" /db_xref="GeneID:10266568" CDS 821146..823494 /gene="mcpC" /locus_tag="AGROH133_04627" /note="methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004278113.1" /db_xref="GI:325292249" /db_xref="GeneID:10266568" /translation="MSFSIRNVLVGFFLTISLALAGLVGNELWRSANRAGTFSEVAQL VSLDKLLFNALLNFRSERGDSATALTLDPSKSTGSVASVQAARQKVDAAMTAFLTQSS SLEDTQLQAPLKRVKDVYAQFVELRKKVDANVSLPLDRREGGLDKTVMALGGDFLASL EAGSTALEGTVRSLDQGQTGLIQLRSYGWSARALGGSATVILNAAVAQNRPLTAQEMQ QLGAFDAGAAFAWKATGDLVTHESTPQSLKDIYATADKTYFKGDFSTQRAKLIDDLMN GRTPAFTMDSWRTTVTENLGTIAKIASAAMDVLDANAAQAKQDAFIDAMIYLVVFIAT LALCILSLAVIVGRVTRPISRLTNAMMELSGGNLSIDVAGAKRGDEIGEMARAVEIFR EAAIRNRQLESEALVNRERAERDRIELQQRAEAEAEERLNQATGSLAGGLRRLASGDM VCEIATPFAPQFEALRHDFNSSVVQLREALTSVGQSVQTVNGGAHEVSSASDDLSRRT EQQAASLEETAAALEEITANVSATSKRAGDARDTVREARAKADLSGKVVRDAVSAMER IEHSSRQIGQIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSA KAAKEIKQLINTSAVAVGEGVKLVADTGVGLSEIEQLVLSVNTHMDAIATAAQEQSAG LSEVNTAVNHMDQATQQNAAMVEEMNAAGAGLAQECANLQALLAQFQLGQQTSALRET ARHMREASPARAPVSQPSRSRPVTASRGNAALAVKGDDWTEF" misc_feature 822127..822327 /gene="mcpC" /locus_tag="AGROH133_04627" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 822592..823296 /gene="mcpC" /locus_tag="AGROH133_04627" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 822760..823296 /gene="mcpC" /locus_tag="AGROH133_04627" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(823668..824555) /gene="oxyR" /locus_tag="AGROH133_04630" /db_xref="GeneID:10266569" CDS complement(823668..824555) /gene="oxyR" /locus_tag="AGROH133_04630" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004278114.1" /db_xref="GI:325292250" /db_xref="GeneID:10266569" /translation="MMDLDLRQVRSFMDVADLGSFSAAADKAGLTQPAISLHIRLLEK HLGVRLIERVGRRAQPTAAGRDFLIHARRIAEEVAHAIDTVAPHRSGVTGRLRIGTGA TACIYLLPPVLGKIRQVMPGIDIVVQTGNTHDILRLLEANTIDAAVVALPASGRSLDI SDIHLDELVAVFPLGTISDATILNAETLWTQPLLLYEGGNTRKLVDQWFSASGRTVQP AMELGSVEAIKKLAGAGLGLAIVPRMAMEHEGAASGLEWRSLEPPLERRIALALRRDK HMTVPLRALAAALPNLQKR" misc_feature complement(823719..824546) /gene="oxyR" /locus_tag="AGROH133_04630" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(824361..824540) /gene="oxyR" /locus_tag="AGROH133_04630" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(823719..824273) /gene="oxyR" /locus_tag="AGROH133_04630" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466" /db_xref="CDD:176102" misc_feature complement(order(823854..823859,823863..823868, 823884..823901,824169..824189,824193..824195, 824205..824207,824214..824219,824223..824228)) /gene="oxyR" /locus_tag="AGROH133_04630" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 824651..825193 /gene="pat" /locus_tag="AGROH133_04632" /db_xref="GeneID:10266570" CDS 824651..825193 /gene="pat" /locus_tag="AGROH133_04632" /EC_number="2.3.1.-" /note="Acetyltransferase (GNAT) family; Sortase and related acyltransferases" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_004278115.1" /db_xref="GI:325292251" /db_xref="GeneID:10266570" /translation="MTPPTISSLTIRPCEEADIPPITEIYRDAVLHGRASFEIDPPSE DMMLERRRLLVEGNYSYLVAEIDGKIAGYAYAGAYRPRPAYGAAVENSVYIDPAMKGM GIGRKLLDALIEDATSRGFRQMIAVIGDSANAASIGVHRAAGFEHVGTFKSIGWKHGQ WLDTVLMQRALGDGDTTPRF" misc_feature 824672..825175 /gene="pat" /locus_tag="AGROH133_04632" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" misc_feature 824675..825169 /gene="pat" /locus_tag="AGROH133_04632" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" gene complement(825198..825542) /locus_tag="AGROH133_04633" /db_xref="GeneID:10266571" CDS complement(825198..825542) /locus_tag="AGROH133_04633" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278116.1" /db_xref="GI:325292252" /db_xref="GeneID:10266571" /translation="MTRPMIHRALLLAAFSSLALPAVASSDDAWKEFVADVQTACLGA GKDMIEDAKVVVDPVGSENYGLAVLTGKAKGADATISHICVYDKKTKAVELGSELAGD TLKVEIPGSTKP" gene 825763..826365 /gene="sodF" /locus_tag="AGROH133_04635" /db_xref="GeneID:10266572" CDS 825763..826365 /gene="sodF" /locus_tag="AGROH133_04635" /EC_number="1.15.1.1" /codon_start=1 /transl_table=11 /product="Superoxide dismutase" /protein_id="YP_004278117.1" /db_xref="GI:325292253" /db_xref="GeneID:10266572" /translation="MAFELPELPYDYDALAPYMSRETLEFHHDKHHKAYVDNGNKLAA EAGLSDLSLEEVVKKSFGTNAGLFNNAAQHYNHVHFWKWLKKDGGGNKLPGKLEQAFA SDLGGYDKFKADFIAAGTTQFGSGWAWVSVKNGKLEISKTPNGENPLVHGAEPILGVD VWEHSYYIDYRNLRPKYLEAFVDNLINWDYVLERYEAAFK" misc_feature 825763..826362 /gene="sodF" /locus_tag="AGROH133_04635" /note="Superoxide dismutase [Inorganic ion transport and metabolism]; Region: SodA; COG0605" /db_xref="CDD:30950" misc_feature 825766..826017 /gene="sodF" /locus_tag="AGROH133_04635" /note="Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081" /db_xref="CDD:189380" misc_feature 826045..826344 /gene="sodF" /locus_tag="AGROH133_04635" /note="Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777" /db_xref="CDD:145761" gene 826455..827366 /locus_tag="AGROH133_04636" /db_xref="GeneID:10266573" CDS 826455..827366 /locus_tag="AGROH133_04636" /note="Metallophosphoesterase, Calcineurin-like phosphoesterase; Predicted phosphohydrolases" /codon_start=1 /transl_table=11 /product="metallophosphoesterase" /protein_id="YP_004278118.1" /db_xref="GI:325292254" /db_xref="GeneID:10266573" /translation="MSQACHPPGLSRRIMTEKTTPLFSFGIVADPQYADAEPRPDMGR YYAESPKKLGEAIDAFNREELAFVATLGDIIDRGFENFDAILGVYEQLRHPSVMLPGN HDFAVAAQHLSAIHSRLGMASPWHDFTIGEIRFVVLDGNEVSLFAPPPGDPRRTLAQE RLRRLQEVGAINAQDWNASLSDEQFEWLRTVLQKADAAGEKVVILCHYPVYPNNAHNM WDAPRILDLLDVHPSVVAWFSGHNHEGNYGVQGNTHFVNFKGMVDTPDQNTFAIADVF ADRIVIRGFGREDDRVLEHLRHNAAVL" misc_feature 826521..827303 /locus_tag="AGROH133_04636" /note="Homo sapiens Nbla03831 and related proteins, metallophosphatase domain; Region: MPP_Nbla03831; cd07396" /db_xref="CDD:163639" misc_feature order(826542..826544,826548..826550,826584..826586, 826671..826673,826758..826763,827073..827075, 827175..827177,827181..827183) /locus_tag="AGROH133_04636" /note="active site" /db_xref="CDD:163639" misc_feature order(826542..826544,826548..826550,826671..826673, 826758..826760,827073..827075,827175..827177, 827181..827183) /locus_tag="AGROH133_04636" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163639" misc_feature 826596..827186 /locus_tag="AGROH133_04636" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" gene complement(827472..828197) /locus_tag="AGROH133_04637" /db_xref="GeneID:10266574" CDS complement(827472..828197) /locus_tag="AGROH133_04637" /note="Winged helix repressor DNA-binding, HTH domain; Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator-repressor protein" /protein_id="YP_004278119.1" /db_xref="GI:325292255" /db_xref="GeneID:10266574" /translation="MRKASRLFEIIQILRVARRPITAQTIAEALEVTVRSVYRDISAL QTMRVPIEGERGVGYILRPGFNLPPLMFSIEETEAIVLALAMVARTGDTELRQAAKKV SDKIAASLPEPLSKTLSANALHAWGSIAPSPAGVDLAMVRRAVRDEERLDITYGDETG VETRRQIRPIATIYYSETTNIVAWCELRQAIRNFRSDRVLTCKTTGSFFKMEGERLRQ LWMSGWQSNQLGTSERTTNQAGA" misc_feature complement(<827493..828197) /locus_tag="AGROH133_04637" /note="Predicted transcriptional regulator [Transcription]; Region: COG2378" /db_xref="CDD:32525" misc_feature complement(828018..828182) /locus_tag="AGROH133_04637" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 828331..828960 /gene="rhtB" /locus_tag="AGROH133_04639" /db_xref="GeneID:10266575" CDS 828331..828960 /gene="rhtB" /locus_tag="AGROH133_04639" /note="Lysine exporter protein (LYSE/YGGA); Putative threonine efflux protein" /codon_start=1 /transl_table=11 /product="RhtB family transporter" /protein_id="YP_004278120.1" /db_xref="GI:325292256" /db_xref="GeneID:10266575" /translation="MSYAENLWLFFLVLFGIIILPGMDMLFVLASALTGGKRTGLSAA SGMSAGGMVHSLYGALGVGMLAAWMPSLFLPLLVAGAAYMVWIGVGLMRSAITVNGDD AQASASVRKAFWRAVLTCLSNPKAYLFMMAIYPQFLKPDYGPIWMQGLVMGAMVAITQ FTVYGALALTADKSRAWLVSSPAATIFIGRAAGFMLIAAALVTLWEALS" misc_feature 828391..828954 /gene="rhtB" /locus_tag="AGROH133_04639" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene 829076..829510 /gene="cycF" /locus_tag="AGROH133_04645" /db_xref="GeneID:10266576" CDS 829076..829510 /gene="cycF" /locus_tag="AGROH133_04645" /note="Cytochrome c prime; Cytochrome c556" /codon_start=1 /transl_table=11 /product="cytochrome C-556" /protein_id="YP_004278121.1" /db_xref="GI:325292257" /db_xref="GeneID:10266576" /translation="MKLKTIAAAMLFGCLCAGAVFAAGEVEKREGMMKQIGGSMGALA AISKGQKPYDAEAVKAAVTTISTNAKAFPDQFPPGSETGSAAAPAIWENFDDFKSKAA KLGADADKVLASLPADQAGVTAAMQTLGADCGACHQTYRLKK" misc_feature 829076..829507 /gene="cycF" /locus_tag="AGROH133_04645" /note="Cytochrome C'; Region: Cytochrom_C_2; cl01610" /db_xref="CDD:194176" gene 829597..830517 /gene="cycG" /locus_tag="AGROH133_04648" /db_xref="GeneID:10266577" CDS 829597..830517 /gene="cycG" /locus_tag="AGROH133_04648" /note="Cytochrome c, monohaem; Cytochrome c, mono- and diheme variants" /codon_start=1 /transl_table=11 /product="diheme cytochrome c-type" /protein_id="YP_004278122.1" /db_xref="GI:325292258" /db_xref="GeneID:10266577" /translation="MASIWTKLAGGIAVAAIAGFGIFAWVTAPVRQAPSHWVSLGEPD LANGETLFWAGGCASCHAAPDAKGDALLTLSGGQALKSPFGTFHVPNISSDPQHGIGG WTLSEFGDAMTRGVGKNGEHLYPSFPYASYARMTQKDINDLFGYLRVLPASQNDAPDH ELPFPFNMRMALGGWKFLYFDTSAPPRVELADANAELLRGQYLVEGPGHCGECHTPRN ALGGFLDGKWLAGGPNPEGEGRIPDITPGSQSVGSWEAADIANYLETGFTPEFDSVGG SMVKVQQNMAHLTAEDRNAIAAYLKAIPAR" misc_feature 830053..830502 /gene="cycG" /locus_tag="AGROH133_04648" /note="Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010" /db_xref="CDD:32193" misc_feature 830191..830508 /gene="cycG" /locus_tag="AGROH133_04648" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 831000..831182 /locus_tag="AGROH133_04650" /db_xref="GeneID:10266578" CDS 831000..831182 /locus_tag="AGROH133_04650" /note="Cobalt transporter subunit CbtB" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278123.1" /db_xref="GI:325292259" /db_xref="GeneID:10266578" /translation="MSINQNTANAAVSAKTGSFAQSLTAIVLGLFVVGFVGFSHVEAV HNAAHDTRHANAFPCH" misc_feature 831000..831179 /locus_tag="AGROH133_04650" /note="Probable cobalt transporter subunit (CbtB); Region: CbtB; cl09723" /db_xref="CDD:158658" gene 831193..831909 /locus_tag="AGROH133_04652" /db_xref="GeneID:10266579" CDS 831193..831909 /locus_tag="AGROH133_04652" /note="Cobalt transporter subunit CbtA, ; Predicted integral membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278124.1" /db_xref="GI:325292260" /db_xref="GeneID:10266579" /translation="MSFFRNIVFTAVLVGIVGGFAVSAMQAFGTTPLILKAETYENAG GEAPHSHDAPATTGAAVPAHEHNEEAWSPADGFERTAYTVAANVLTAIGYALVLTGLI SLRGTDAGWREGLLWGVAGFAAVMLAPMIGLPPELPGSPAAALEARQIWWLSTVAATA GGIALIAFRREPWAIVLALVLIVALHVVGAPLPPEGEHALAPLPLERQFIVAATVTSF VSWALLGTLSAFFLKRFQQA" misc_feature 831193..831906 /locus_tag="AGROH133_04652" /note="Probable cobalt transporter subunit (CbtA); Region: CbtA; cl02266" /db_xref="CDD:189157" gene 831914..832228 /locus_tag="AGROH133_04660" /db_xref="GeneID:10266580" CDS 831914..832228 /locus_tag="AGROH133_04660" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278125.1" /db_xref="GI:325292261" /db_xref="GeneID:10266580" /translation="MQDAAEWSEELDALRFAVPGHGAFCAVHRLAFKAVLGVSPEREA ALAYFHENEAAFTAAALAKIKRSALPAGRSLHLNSRDIRRAIAGECGDVAPRVCRVLD QG" gene complement(832332..832898) /locus_tag="AGROH133_04661" /db_xref="GeneID:10266581" CDS complement(832332..832898) /locus_tag="AGROH133_04661" /note="ThiJ/PfpI; Putative intracellular protease/amidase" /codon_start=1 /transl_table=11 /product="ThiJ/PfpI family protein" /protein_id="YP_004278126.1" /db_xref="GI:325292262" /db_xref="GeneID:10266581" /translation="MTRIAIALAQDFADWEPALLAAAARGYLGVEIVYATPDGRPVVS MGGLNVTPDTSYDALDPANIDALVIPGGLSWEKGTAADLGGLVQRFREKGRLVAGICA AASALAGTGALDDVAHTGNSLASHKAYPSYRGEALYRDQPKAVSDGGIVTAAGSAPVS FAVEILKHLGLFGPEAEAELGIFAAEHR" misc_feature complement(832380..832889) /locus_tag="AGROH133_04661" /note="Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020" /db_xref="CDD:193615" misc_feature complement(832596..832598) /locus_tag="AGROH133_04661" /note="conserved cys residue [active]" /db_xref="CDD:153222" gene complement(832920..833408) /locus_tag="AGROH133_04662" /db_xref="GeneID:10266582" CDS complement(832920..833408) /locus_tag="AGROH133_04662" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family; Sortase and related acyltransferases" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_004278127.1" /db_xref="GI:325292263" /db_xref="GeneID:10266582" /translation="MTEDSSLTLERPPVVIIRGARKTDLPEFNEMITLLATFHGDAAA ITPAKLERDLFGPLPWVHGLVAEADGALIGYALMLPLYRAQEGRRGLELHHLFVRDGH RGHGTGQHLVSRARDIAKRLGCDYLSVSATTGNVAAHRFYESMDFAPRPVTGMRYMQS IA" misc_feature complement(832968..833393) /locus_tag="AGROH133_04662" /note="Acetyltransferases [General function prediction only]; Region: RimI; COG0456" /db_xref="CDD:30804" misc_feature complement(833019..833219) /locus_tag="AGROH133_04662" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(833082..833087,833115..833123)) /locus_tag="AGROH133_04662" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(833614..834027) /locus_tag="AGROH133_04663" /db_xref="GeneID:10266583" CDS complement(833614..834027) /locus_tag="AGROH133_04663" /note="DNA binding; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_004278128.1" /db_xref="GI:325292264" /db_xref="GeneID:10266583" /translation="MLSIGELSKRTGVKVPTIRYYEQMGLIREADRSEGNQRRYEKSD LERLAFIRHARDIGLNIDAIRELIALSQHRQMPCEGADRIAAEHLAHVREKITSLKKL EHELERIVSHCHGHSIEDCYVIRALSDHGMCEGEH" misc_feature complement(833647..834024) /locus_tag="AGROH133_04663" /note="Cd(II)/Pb(II)-responsive transcriptional regulator; Region: CadR-PbrR; TIGR02047" /db_xref="CDD:131102" misc_feature complement(833647..834024) /locus_tag="AGROH133_04663" /note="Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators; Region: HTH_CadR-PbrR-like; cd04785" /db_xref="CDD:133412" misc_feature complement(order(833914..833922,833971..833973, 834013..834021)) /locus_tag="AGROH133_04663" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133412" misc_feature complement(order(833659..833661,833665..833667, 833680..833685,833698..833700,833719..833724, 833731..833733,833743..833745,833761..833763, 833773..833775,833782..833784,833791..833796, 833827..833829,833854..833859,833869..833871, 833878..833880)) /locus_tag="AGROH133_04663" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133412" misc_feature complement(order(833665..833667,833689..833691, 833794..833796)) /locus_tag="AGROH133_04663" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:133412" gene complement(834124..834477) /locus_tag="AGROH133_04665" /db_xref="GeneID:10266584" CDS complement(834124..834477) /locus_tag="AGROH133_04665" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278129.1" /db_xref="GI:325292265" /db_xref="GeneID:10266584" /translation="MTTIAATTSSYYATPVRTLEPTKTRETNATTEALLELTRAAHRA ISSAESVAVSAAPAAASVSAGLAAALWNLDSGAQARTEPAVDIAASAQPDAASSIETE VLKALAQALGVDAAA" gene 834605..834877 /locus_tag="AGROH133_04666" /db_xref="GeneID:10266585" CDS 834605..834877 /locus_tag="AGROH133_04666" /note="Protein of unknown function DUF156, Uncharacterised BCR, COG1937; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278130.1" /db_xref="GI:325292266" /db_xref="GeneID:10266585" /translation="MSHTIRNKEKLLARIRRLKGQMEAVERALDDSKPCGEVLQLLAS VRGALSGLTGEVMQEHLHEHVVHAENEDERARAAEELAQVLKTYIR" misc_feature 834611..>834805 /locus_tag="AGROH133_04666" /note="Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156; Region: RcnR-FrmR-like_DUF156; cd10153" /db_xref="CDD:197388" misc_feature order(834611..834613,834707..834709,834782..834784, 834794..834796) /locus_tag="AGROH133_04666" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197388" misc_feature order(834626..834628,834635..834640,834647..834652, 834659..834661,834668..834673,834677..834682, 834689..834700,834704..834712,834716..834724, 834728..834733,834737..834742,834749..834754, 834761..834766,834770..834778,834782..834790, 834797..834799) /locus_tag="AGROH133_04666" /note="putative homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature order(834626..834628,834635..834640,834647..834652, 834659..834661,834668..834673,834677..834682, 834689..834700,834704..834712,834716..834724, 834728..834733,834737..834742,834749..834754, 834761..834763,834770..834772,834782..834784) /locus_tag="AGROH133_04666" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature order(834764..834766,834773..834778,834785..834790, 834794..834799) /locus_tag="AGROH133_04666" /note="putative homodimer-homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature 834782..834784 /locus_tag="AGROH133_04666" /note="putative allosteric switch controlling residues; other site" /db_xref="CDD:197388" gene 834959..835969 /locus_tag="AGROH133_04667" /db_xref="GeneID:10266586" CDS 834959..835969 /locus_tag="AGROH133_04667" /note="Cation efflux family, CDF: cation diffusion facilitator family transporter; Co/Zn/Cd efflux system component" /codon_start=1 /transl_table=11 /product="cation efflux system protein" /protein_id="YP_004278131.1" /db_xref="GI:325292267" /db_xref="GeneID:10266586" /translation="MTTTSEFSAASGHDHVFLGRNHERNEKRVWMVIALTTVMMVAEI VAGHWFGSMALTADGWHMSTHAGAMLISALAYLYARREARNPRFTFGTGKFGDLAGFA SAIVLAVVALLIAVESAMRLFNPVQIDFNQAILVAVIGLAVNLVSAVLLKDDHDHGHG HGHAHGSHAHHGHGSHAHHDHGSHAHHGEHGAKGGRDNNLRAAYLHVLADALTSVLAI VALLLGKWNGWSFLDPLMGIVGGVVIARWSWGLIRSTATTLVDAVPLTEDLPQEIRES VETEEDRITDLHVWQVGPGHHAAIVAIHSQVPKAPAFYKQKLAAIHELSHVTVEVSPA RA" misc_feature 834965..835963 /locus_tag="AGROH133_04667" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" gene complement(835980..836447) /locus_tag="AGROH133_04674" /db_xref="GeneID:10266587" CDS complement(835980..836447) /locus_tag="AGROH133_04674" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278132.1" /db_xref="GI:325292268" /db_xref="GeneID:10266587" /translation="MASTTRSVGKAGNARLPIQPCKNEAPLCHVSSRERHCNAASASF GQAAAVNHLLTFERGITGMQIESNIGGYNYQARVRDIEKPGSAQSAPEEQAVKRGPGN PTVSSTVLSRSLANVLWAVGNGSAPAHTPAATSAEDKAEAQAEWVRSAYSEYE" gene complement(836628..837734) /locus_tag="AGROH133_04675" /db_xref="GeneID:10266588" CDS complement(836628..837734) /locus_tag="AGROH133_04675" /EC_number="3.6.3.32" /note="ABC-type oligopeptide transport system, ATPase component" /codon_start=1 /transl_table=11 /product="glycine betaine/L-proline transport, ATP-binding subunit" /protein_id="YP_004278133.1" /db_xref="GI:325292269" /db_xref="GeneID:10266588" /translation="MAKSIEIRNLYKIFGKHPEKYLEAVRSGMDKVELNDKHNHVLGL NNINITMPGGKITVVMGLSGSGKSTLIRHINRLIDPTAGEVLYDGEDICGMSTSALRK FRRHKTAMVFQKFGLLPHRTVLENSVYGLDIQGMPRKDSEEKGRYWLDRVGLAGYEDY YPNQLSGGMQQRVGLARALANDADILLMDEAYSALDPLIRVDMQTMLLDLQQELKKTV VFITHDLDEALRLGDHIAILKDGEVVQQGDGQSIILSPADGYVTDFVRDVNRSRVLQA TTVMEPLTAKPEGMSVPENATLETIARDMSEANETSAHVVDEDGKPVGAIGLDTLVAA MVTPAPQEADLRLAVVEEAEKIPEPAAPAEKETA" misc_feature complement(836709..837734) /locus_tag="AGROH133_04675" /note="ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]; Region: ProV; COG4175" /db_xref="CDD:33915" misc_feature complement(836916..837722) /locus_tag="AGROH133_04675" /note="This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these...; Region: ABC_Pro_Gly_Bertaine; cd03294" /db_xref="CDD:73053" misc_feature complement(837531..837554) /locus_tag="AGROH133_04675" /note="Walker A/P-loop; other site" /db_xref="CDD:73053" misc_feature complement(order(837066..837068,837165..837170, 837396..837398,837528..837536,837540..837545)) /locus_tag="AGROH133_04675" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73053" misc_feature complement(837396..837407) /locus_tag="AGROH133_04675" /note="Q-loop/lid; other site" /db_xref="CDD:73053" misc_feature complement(837213..837242) /locus_tag="AGROH133_04675" /note="ABC transporter signature motif; other site" /db_xref="CDD:73053" misc_feature complement(837165..837182) /locus_tag="AGROH133_04675" /note="Walker B; other site" /db_xref="CDD:73053" misc_feature complement(837147..837158) /locus_tag="AGROH133_04675" /note="D-loop; other site" /db_xref="CDD:73053" misc_feature complement(837060..837080) /locus_tag="AGROH133_04675" /note="H-loop/switch region; other site" /db_xref="CDD:73053" misc_feature complement(836727..836864) /locus_tag="AGROH133_04675" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" gene complement(837727..838635) /locus_tag="AGROH133_04676" /db_xref="GeneID:10266589" CDS complement(837727..838635) /locus_tag="AGROH133_04676" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type proline/glycine betaine transport system, permease component" /codon_start=1 /transl_table=11 /product="glycine/betaine transport system; permease protein" /protein_id="YP_004278134.1" /db_xref="GI:325292270" /db_xref="GeneID:10266589" /translation="MALCNYLPDMLCKFPAIDNGTMRVARKTIDDGFRDIVRNYGDAI DVIVHPLQLFLNSSERLFIQTPWIVTMLVILAIVHLAGRSFKITGGTAISLLMIGAVG LWRDAMTTLSIVAIATLIAIVIGLPLGILMGRSERLQRIINPVLDVMQTLPSFVYLIP VVVIFGIGKVPGLIAVVIYAIPPVIRLTSLGIRLVDREVLEAADAFGSSNGQKLFNVQ LPLALPTIMTGINQTIMMALAMVVVASMVGVGGLGKNVLQAINNQFFTVGFLNGFALV AIAIMFDRASQAFGKRLQKYREVSHG" misc_feature complement(<837946..838263) /locus_tag="AGROH133_04676" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(837949..837954,837994..837996, 838045..838047,838054..838059,838069..838071, 838075..838080,838087..838089,838093..838095, 838099..838104,838150..838152,838156..838161, 838168..838197,838201..838212,838237..838239, 838252..838257)) /locus_tag="AGROH133_04676" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(838150..838194) /locus_tag="AGROH133_04676" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(837973..837975,837985..837990, 838006..838044)) /locus_tag="AGROH133_04676" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(838900..839910) /locus_tag="AGROH133_04683" /db_xref="GeneID:10266590" CDS complement(838900..839910) /locus_tag="AGROH133_04683" /note="Substrate-binding region of ABC-type glycine betaine transport system; ABC-type proline/glycine betaine transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="glycine betaine-binding periplasmic protein" /protein_id="YP_004278135.1" /db_xref="GI:325292271" /db_xref="GeneID:10266590" /translation="MKKLLASTILVTGFTIAAGAANSANAAETCGSVTIAEMNWASAG VAAYVDKFIMENGYDCTVNVISGDTTPTFTSMNEKGQPDMAPEMWVNTLGAPYEDAVK KGNLIQESKILSEGGVEGWWIPKYLADEHPDIKTVEDALKHPELFPAPEDASKGAVFG CPPGWGCQPTTANLFKARKADEKGFALIDTGSAAGLDGSISNAYEKKQGWLGYYWSPT AILGKYDMVKLDDGVALDREAYDNCIAKPDCADPKPNAYPVAEVFTVVTKDFAEKAGP SIDYIRERQWDNETVAKVLAWMDENQGTNEDGAEYFLENNEDIWTKWVSPEVAEKIKA SM" misc_feature complement(838915..839910) /locus_tag="AGROH133_04683" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(838966..839820) /locus_tag="AGROH133_04683" /note="Substrate binding domain of ABC-type glycine betaine transport system; Region: OpuAC; pfam04069" /db_xref="CDD:146609" gene complement(839940..840086) /locus_tag="AGROH133_04685" /db_xref="GeneID:10266591" CDS complement(839940..840086) /locus_tag="AGROH133_04685" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278136.1" /db_xref="GI:325292272" /db_xref="GeneID:10266591" /translation="MRLFAAFLAAILQHVLRIILSPDFFGFFMRHVSSPLAIRALQCS RFAN" gene complement(840406..842577) /gene="ptrB" /locus_tag="AGROH133_04686" /db_xref="GeneID:10266592" CDS complement(840406..842577) /gene="ptrB" /locus_tag="AGROH133_04686" /EC_number="3.4.21.83" /note="Peptidase S9A, prolyl oligopeptidase" /codon_start=1 /transl_table=11 /product="Protease II" /protein_id="YP_004278137.1" /db_xref="GI:325292273" /db_xref="GeneID:10266592" /translation="MIGGEGHSTSWVPPTHFSYESEFPLPIFKNLPAAPTAEKRPVQD THHGITRTDDYAWFRADNWQAMFKEPTLLDPAIRAHLEAENAYMEAAMGDTKTLQEKL FEEMKGRIKQDDSSVPVNDGPYAYGTLFVTGGEQPHYFRTPRDGGEKHVLLDGDREAQ GKDYFRLAGLDQSSDHSHGIWGYDDKGSEYFTLRIRNLETGEDLADVVENTGGGGAWA PDGKSFFYTLQDENHRPSKVFHHIMGEPQSADRLVYEEKDPGFFMGVGASVLDDFIFI DIHDHETSEYRILSTKDLMAEPVVVAEREEGIEYSMCEGGDVFYILTNDGDAKDFRIM EAPVTAPGKENWKEVVPHEPGRLILSVDAYARHLIWLERRDGLPRIVIRDRRTGEEHS IAFAEEAYSLGLHGAAEYDTDVIRFSYSSMTTPSQLFDYNMVTRDRTLLKTQEVPSGH NPDDYITRRIMAPAHDGELVPVSLLYRKDVALDGSAPCLLYGYGAYGITIPASFSTTT LSLADRGFIYAIAHIRGGKDKGFEWYETGKMKDKQNTFKDFIAAADHLVKEGFTSYDR IIAEGGSAGGMLMGAVANMAPEKFAGIIAAVPFVDVLTTMLDDTLPLTPPEWPEWGNP LESEEEYQWIAAYSPYDNVGEKPYPPLLALSGLTDPRVTYWEPTKWVAKLREKTTGEA PILLKTNMAAGHGGKSGRFQRLEEIAFEYAFALKVAGKDTV" misc_feature complement(840415..842493) /gene="ptrB" /locus_tag="AGROH133_04686" /note="Protease II [Amino acid transport and metabolism]; Region: PtrB; COG1770" /db_xref="CDD:31956" misc_feature complement(840418..841074) /gene="ptrB" /locus_tag="AGROH133_04686" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 842729..843130 /locus_tag="AGROH133_04687" /db_xref="GeneID:10266593" CDS 842729..843130 /locus_tag="AGROH133_04687" /note="Protein of unknown function DUF930" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278138.1" /db_xref="GI:325292274" /db_xref="GeneID:10266593" /translation="MRKFLPAALSAFFLALQASTPAFAIDANVMRQLNVLAPEERLEQ RCDIEAMERIATEQKGMKPDKVIAYTFGDPEVGKNSIKASGAVFRSAGEWYKLKYKCQ LKSDSLSIQSFDYRVGDKIPEEQWKKLYLYD" misc_feature 842825..843127 /locus_tag="AGROH133_04687" /note="Domain of Unknown Function (DUF930); Region: DUF930; pfam06059" /db_xref="CDD:114763" gene 843236..844144 /gene="dapA" /locus_tag="AGROH133_04689" /db_xref="GeneID:10266594" CDS 843236..844144 /gene="dapA" /locus_tag="AGROH133_04689" /EC_number="4.2.1.52" /note="Dihydrodipicolinate synthase/N- acetylneuraminate lyase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_004278139.1" /db_xref="GI:325292275" /db_xref="GeneID:10266594" /translation="MAKLFKGLSAFPITPADEAGQVDSQAFSALVERLDAAEVDSIGI LGSTGTYMYLSRAERRRAVEAAHAVLKGRRTLMAGVGALRTDEAVALAKDAEAAGADA LLLAPVSYTPLTQEEAYHHFAAVAGATDLPLAIYNNPTTTRFSFSDELLVRLAYIPNI RAIKMPLPADSDYAGELARLRPKLTDDFAIGYSGDWGCAEATLAGGDAWYSVVAGLLP VPALRLMRAAQAGDAEETRRLDLAFQPLWALFKEFGSIRVVYAAANALSVTACEPPRP ILSLTSAERQRVEEVLNALSTLEAAP" misc_feature 843236..844105 /gene="dapA" /locus_tag="AGROH133_04689" /note="Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329" /db_xref="CDD:30677" misc_feature 843257..844111 /gene="dapA" /locus_tag="AGROH133_04689" /note="Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408" /db_xref="CDD:188630" misc_feature order(843266..843268,843362..843364,843371..843379, 843641..843643,843725..843727) /gene="dapA" /locus_tag="AGROH133_04689" /note="inhibitor site; inhibition site" /db_xref="CDD:188630" misc_feature order(843362..843364,843371..843379,843641..843643, 843725..843727,843863..843865) /gene="dapA" /locus_tag="AGROH133_04689" /note="active site" /db_xref="CDD:188630" misc_feature order(843374..843376,843389..843394,843485..843490, 843560..843565,843584..843586,843596..843598, 844058..844063) /gene="dapA" /locus_tag="AGROH133_04689" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188630" misc_feature 843725..843727 /gene="dapA" /locus_tag="AGROH133_04689" /note="catalytic residue [active]" /db_xref="CDD:188630" gene 844197..844922 /locus_tag="AGROH133_04690" /db_xref="GeneID:10266595" CDS 844197..844922 /locus_tag="AGROH133_04690" /note="glycoside hydrolase/deacetylase, beta/alpha-barrel, Polysaccharide deacetylase; Predicted xylanase/chitin deacetylase" /codon_start=1 /transl_table=11 /product="polysaccharide deacetylase protein" /protein_id="YP_004278140.1" /db_xref="GI:325292276" /db_xref="GeneID:10266595" /translation="MLRSLPFAALFLSLSTAAFAGTGLVEPTLKMTPRHDGRVRVAMT LDACMGKTDHRILDTLVQEKIPATIFVTARWLKHNSEALAVMMAHPDLFEIENHGENH VPAVDKPVAIYGIAAAGSEAAVEQEVEGGRQAIVAMTGLQPQWFRGATAKYTTSSMAT INRLGMRVAGYSVNGDGGSLLGAAATAKHIASAKDGDVIISHINQPTHEAGEGVVRGL LALKARGVVFTRLDDPSFTPPGN" misc_feature 844317..844703 /locus_tag="AGROH133_04690" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene 845039..846115 /gene="ada" /locus_tag="AGROH133_04692" /db_xref="GeneID:10266596" CDS 845039..846115 /gene="ada" /locus_tag="AGROH133_04692" /EC_number="2.1.1.63" /note="methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Adenosine deaminase" /codon_start=1 /transl_table=11 /product="6-O-methylguanine-DNA methyltransferase" /protein_id="YP_004278141.1" /db_xref="GI:325292277" /db_xref="GeneID:10266596" /translation="MLFKRPDTETLYSALVNKDPAYEGVAYVCVTSTKIFCRFTCTAR KPKIENCRFRETIAECLEAGFRPCKRCKPMLSYGTADETVTTLLTALESEPARRWREE DVVAMGHDPSTVRRTFKRRFGMSFLEIARLRRLGDAATSLASGEAVIGAQIDAGYESG SGFRSAINQFFGTSPAAMKGKGFLKGDWIDTPIGPMLVVADDHALHLLEFADRPALPA ELKRLKARTGADMVLGRTPVTGQIAAELAAYFAGHSADFATRLAGHGTPFERDVWHAL REIPAGEIVSYSSLATSMQRPSAVRAVARANGANQIAIVVPCHRVLGADGSLTGYGGG LWRKKWLIEHERRMADKLRIPLAS" misc_feature 845039..845599 /gene="ada" /locus_tag="AGROH133_04692" /note="Adenosine deaminase [Nucleotide transport and metabolism]; Region: Ada; COG2169" /db_xref="CDD:32352" misc_feature 845063..845260 /gene="ada" /locus_tag="AGROH133_04692" /note="Metal binding domain of Ada; Region: Ada_Zn_binding; pfam02805" /db_xref="CDD:145780" misc_feature 845597..846079 /gene="ada" /locus_tag="AGROH133_04692" /note="Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]; Region: Ada; COG0350" /db_xref="CDD:30699" misc_feature 845840..846076 /gene="ada" /locus_tag="AGROH133_04692" /note="The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445" /db_xref="CDD:119438" misc_feature order(845840..845845,845897..845902,845924..845926, 845933..845935,845939..845944,845948..845950, 845957..845962,845966..845968,845990..845992, 846005..846007,846026..846028) /gene="ada" /locus_tag="AGROH133_04692" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:119438" misc_feature order(845897..845899,845990..845995,845999..846001, 846071..846073) /gene="ada" /locus_tag="AGROH133_04692" /note="active site" /db_xref="CDD:119438" gene complement(846123..847307) /locus_tag="AGROH133_04693" /db_xref="GeneID:10266597" CDS complement(846123..847307) /locus_tag="AGROH133_04693" /note="Protein of unknown function UPF0118; Predicted permease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278142.1" /db_xref="GI:325292278" /db_xref="GeneID:10266597" /translation="MNENARPENTGILGNIGRRAANAPSTRADPFEGLASGSHRDDAR SQQPLGREALDVAVAWSVIGIFLVVMMAVIHELSLILIPVVLAIVVGMILGIAAEKLS SYGIPGAGVAVILSGLVAAVMFFVINSLIDPLSQLASEGPALIERSMDRFLPYLQSIR WLNISAATFSMGSISMESLISRSGEIISLLGSNVTPAVVQGMIFLAALLMFLYSRLRL RKAIIMAFPARHQRLRAIRIIASVEEVLGTYFATAALIYAALGVTMVAIAYFGGLAMP LLWGLFAFLSSFVPFLGITAMTVSLAVAGIITHDNMVLALLPSAIFFTIHLLMENLAF PAVVGRNMEINPFLVFVMIIFWTWMWGAAGAMLALPLSLIAMTVTRELFPSRRIVPNL PA" misc_feature complement(846129..847169) /locus_tag="AGROH133_04693" /note="Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628" /db_xref="CDD:30973" misc_feature complement(846195..846977) /locus_tag="AGROH133_04693" /note="Domain of unknown function DUF20; Region: UPF0118; cl00465" /db_xref="CDD:186015" gene complement(847391..848251) /locus_tag="AGROH133_04703" /db_xref="GeneID:10266598" CDS complement(847391..848251) /locus_tag="AGROH133_04703" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Predicted ring-cleavage extradiol dioxygenase" /codon_start=1 /transl_table=11 /product="glyoxylase protein" /protein_id="YP_004278143.1" /db_xref="GI:325292279" /db_xref="GeneID:10266598" /translation="MSEIKQFALTRPAYVGQAHLVVHDLPRISEFYQKIIGLSVIEKS PSGEVLGVNGQPLLTLSTSGTVERAPRNAAGLFHTAFLMPRREDLAHWLAHAAHNNIQ LQGASDHLVSEAIYLADPEGNGIEVYRDRSPSEWTYQQDGTVEMATLRLDLQALYDSA PKTAFEAAADGTAIGHMHLQVGNIPQADEFYQDVLGLKIMARYPGASFFGSGAYHHHV AANIWNSRGATARTDNITGLSGYSLKFNDSAALDTAMAALDRLEIATERQSDGIVLKD PWGIGLKLST" misc_feature complement(847397..848236) /locus_tag="AGROH133_04703" /note="Predicted ring-cleavage extradiol dioxygenase [General function prediction only]; Region: COG2514" /db_xref="CDD:32584" misc_feature complement(847844..848212) /locus_tag="AGROH133_04703" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_12; cd07255" /db_xref="CDD:176678" misc_feature complement(order(847874..847876,848018..848020, 848201..848203)) /locus_tag="AGROH133_04703" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176678" misc_feature complement(847400..847738) /locus_tag="AGROH133_04703" /note="This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632" /db_xref="CDD:196803" misc_feature complement(order(847403..847405,847409..847411, 847532..847534,847589..847591,847595..847597, 847634..847636,847712..847714,847724..847726)) /locus_tag="AGROH133_04703" /note="active site" /db_xref="CDD:176657" misc_feature complement(order(847403..847405,847532..847534, 847724..847726)) /locus_tag="AGROH133_04703" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176657" gene 848479..848934 /gene="uspA" /locus_tag="AGROH133_04704" /db_xref="GeneID:10266599" CDS 848479..848934 /gene="uspA" /locus_tag="AGROH133_04704" /note="Universal stress protein family; Universal stress protein UspA and related nucleotide-binding proteins" /codon_start=1 /transl_table=11 /product="universal stress protein" /protein_id="YP_004278144.1" /db_xref="GI:325292280" /db_xref="GeneID:10266599" /translation="MSPTRERQITPKEIAMYKKIIVPVDLSAIDKGEKILAKARALLD ADGEIVLINVVEELPGYMAIDLPVDLIENAIKDAKTKLADIQAKAGFKGKHEIRSGAP AREIIAAAEEHKADLIIIASHMPDFTNYFIGATADRVVRHAKCSVLIDR" misc_feature 848533..848925 /gene="uspA" /locus_tag="AGROH133_04704" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature order(848545..848553,848638..848640,848836..848841, 848845..848847,848875..848886) /gene="uspA" /locus_tag="AGROH133_04704" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene 848996..849316 /gene="dskA" /locus_tag="AGROH133_04705" /db_xref="GeneID:10266600" CDS 848996..849316 /gene="dskA" /locus_tag="AGROH133_04705" /note="Zinc finger, DksA/TraR C4-type" /codon_start=1 /transl_table=11 /product="DnaK suppressor protein" /protein_id="YP_004278145.1" /db_xref="GI:325292281" /db_xref="GeneID:10266600" /translation="MNVDSYEKILRDRQRELYSRLHKIEADFEEPRNPDDDDRAAERS NDEVLDEIGQVGQDELRAIDAALDRIANGTYGTCVKCGKKISEDRLKAVPYTPFCQEC AAAL" misc_feature <849119..>849304 /gene="dskA" /locus_tag="AGROH133_04705" /note="Prokaryotic dksA/traR C4-type zinc finger; Region: zf-dskA_traR; cl00755" /db_xref="CDD:193930" gene 849504..850172 /locus_tag="AGROH133_04706" /db_xref="GeneID:10266601" CDS 849504..850172 /locus_tag="AGROH133_04706" /note="channel protein, hemolysin III family; Predicted membrane protein, hemolysin III homolog" /codon_start=1 /transl_table=11 /product="hemolysin III" /protein_id="YP_004278146.1" /db_xref="GI:325292282" /db_xref="GeneID:10266601" /translation="MSNVWRFGRQYDFHEIVADGIVHGVGIVFALVGATALIFYATVW GSLSAIAAAWIYGLGLVACLSVSFTYNIWPHSNVKWFLRRLDHSAIFILIAATYTPFL MRGIHEPLIATMLGLIWLAAICGILLKCVFPGRYDRVAIGLYLAMGWSGIMVVQPLST HLAPVTLWLIVAGGVIYSLGVVFHVWEKLRFQNAIWHGFVVAAAVVHYFAVVTSFSLV PMSS" misc_feature 849528..850100 /locus_tag="AGROH133_04706" /note="Haemolysin-III related; Region: HlyIII; cl03831" /db_xref="CDD:186601" gene 850281..850778 /locus_tag="AGROH133_04714" /db_xref="GeneID:10266602" CDS 850281..850778 /locus_tag="AGROH133_04714" /EC_number="2.3.1.-" /note="Acetyltransferase (GNAT) family; Sortase and related acyltransferases" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_004278147.1" /db_xref="GI:325292283" /db_xref="GeneID:10266602" /translation="MSLELRDATVEDLSGIMEIYNDAVLNTTAIWNEVLVDLENRKEW FSARKSRDFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRL MQALIDHASGNDVHVLIAAIESENAASIRLHESLGFTVAGRFSEVGTKFGRWLDLTCM ELKLN" misc_feature 850314..850709 /locus_tag="AGROH133_04714" /note="ribosomal-protein-alanine acetyltransferase; Region: rimI; TIGR01575" /db_xref="CDD:162430" misc_feature 850443..850634 /locus_tag="AGROH133_04714" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature order(850539..850547,850575..850580) /locus_tag="AGROH133_04714" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(850799..851464) /locus_tag="AGROH133_04715" /db_xref="GeneID:10266603" CDS complement(850799..851464) /locus_tag="AGROH133_04715" /note="Lysine exporter protein (LYSE/YGGA); Putative threonine efflux protein" /codon_start=1 /transl_table=11 /product="Lysine exporter protein" /protein_id="YP_004278148.1" /db_xref="GI:325292284" /db_xref="GeneID:10266603" /translation="MRLSRSHSFRITIMALETILIFIPACFALNMAFGPNNLLSMTVG ARYGMATAVMAASGRLAAFAGMIAIAALGLGALLMASEMMFSLIKWIGVLYLLWIGFK LIRSRADVTAPDISSGNGNILKTYLRQEFFVASGNPKAILIFTAFFPQFIQQDAYWQS FATLGAIFLLLEVVAITVYAFVGSRLSGLMRNARALKRVNRISGSMMMAFGVMLAFAR RPA" misc_feature complement(850808..851425) /locus_tag="AGROH133_04715" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene complement(851542..851949) /gene="msrB" /locus_tag="AGROH133_04721" /db_xref="GeneID:10266604" CDS complement(851542..851949) /gene="msrB" /locus_tag="AGROH133_04721" /EC_number="1.8.4.11" /note="this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; Conserved domain frequently associated with peptide methionine sulfoxide reductase" /codon_start=1 /transl_table=11 /product="peptide methionine sulfoxide reductase" /protein_id="YP_004278149.1" /db_xref="GI:325292285" /db_xref="GeneID:10266604" /translation="MSDLTSPKVNKSDADWREQLTPEQYRILREHGTERPFTGPYWDT FQKGLYRCAACDEPLFLSDTKFDAGCGWPSYFEPVKPGAVTEHRDATLGMVRTEIRCA NCGGHLGHVFPDGPPPTGLRYCINGHSMVFEPI" misc_feature complement(851548..851931) /gene="msrB" /locus_tag="AGROH133_04721" /note="SelR domain; Region: SelR; cl00369" /db_xref="CDD:185947" gene 852155..854524 /gene="mnhA" /locus_tag="AGROH133_04722" /db_xref="GeneID:10266605" CDS 852155..854524 /gene="mnhA" /locus_tag="AGROH133_04722" /note="subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit A" /protein_id="YP_004278150.1" /db_xref="GI:325292286" /db_xref="GeneID:10266605" /translation="MTSDVTQLTFLSLFLPFLAALAAPMLVKRLGHNAVWILAIAPAL AFVHFALMLPQVAAGGVVTGGYVWVPSFNLSFSWFIDGLSLTFALLITGIGLLIVLYA GGYMKGHPQQGRFLSFLLLFMGAMLGVVVSDSLLMLFVYWELTSITSFLLIGFDHARP AARRAALQALVVTGGGGLLLLAGLIFIWDMSGMTQLSMLVRGGDILRDSPFYLAALLL VLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGVYLLMRLNPVLGDTAAW QILLPFFGGLTMLTGALLAVRQTDLKLMLAYTTMSSLGLLVMLTGFGSDQAIEAAVLY LVAHSLFKGALFMVAGIIDHETGTRDVTKLGGLRKAMPITFAAALAAAISMAGLPPFF GFLAKEEIYYALAHGNPRAVLFTGIAILGNALMFAVAFAVALKPFLGKPVKTPKHAHE GPLLLWLGPALLAIKGLTIALFAGLSHFYISTPMASAIAGEARPVEISLIPHIGVPLG LSLLTIALGIVLYMQLSAVRGLMVRTFKALGAGPDRGFDVFIETLVKISFHVVRLIQP GRLEFYVTATFAVIAVVLLAPLFLYGEMPSMPAWPHDMKIHELTFIAIAVAGLVAVLT ASSRLTAIIALGIQGFAVAVIFLLFGAPDLSFTQFMVETLSVVILTLVMTRLRLSPSD HRGPGQKLLDSTIAIACGTGFALFLMRATEASFDNRLTDFYNTYSKVIAHGANVVNVI IVDFRGTDTLGEIAVVMITGLAILALIRIRPAAAIKGPAKIAKKKGARA" misc_feature 852233..854434 /gene="mnhA" /locus_tag="AGROH133_04722" /note="putative monovalent cation/H+ antiporter subunit A; Reviewed; Region: PRK12647" /db_xref="CDD:183647" misc_feature 852548..853366 /gene="mnhA" /locus_tag="AGROH133_04722" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" misc_feature 854030..854434 /gene="mnhA" /locus_tag="AGROH133_04722" /note="Domain related to MnhB subunit of Na+/H+ antiporter; Region: MnhB; cl00676" /db_xref="CDD:186140" gene 854521..854940 /gene="mnhB" /locus_tag="AGROH133_04742" /db_xref="GeneID:10266606" CDS 854521..854940 /gene="mnhB" /locus_tag="AGROH133_04742" /note="subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; Multisubunit Na+/H+ antiporter, MnhB subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit B" /protein_id="YP_004278151.1" /db_xref="GI:325292287" /db_xref="GeneID:10266606" /translation="MNTLILRTVAPVVTSLMVLFSIFVLLRGHNEPGGGFIGGLIAVS ALAIYGIAYGVAAVRRAIVYHPLSIAGAGLLLAMLSGLVSTAAGVPFMTGLWVYPSLL GVEVPLSTVMSFDIGVYLVVVGAITSIALALEERDSD" misc_feature 854521..854931 /gene="mnhB" /locus_tag="AGROH133_04742" /note="Domain related to MnhB subunit of Na+/H+ antiporter; Region: MnhB; cl00676" /db_xref="CDD:186140" gene 854940..855317 /gene="mnhC" /locus_tag="AGROH133_04747" /db_xref="GeneID:10266607" CDS 854940..855317 /gene="mnhC" /locus_tag="AGROH133_04747" /note="subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Multisubunit Na+/H+ antiporter, MnhC subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit C" /protein_id="YP_004278152.1" /db_xref="GI:325292288" /db_xref="GeneID:10266607" /translation="MEAVFSILVGIFFSVAIYLMLSRHSIRMLLGIAILGNAVNLLLF TAGRLTREVPPIIPPGMDALPAGAANPLPQALILTAIVISFSFFCFLLVLTWRAFQEL QTDDTDEMRTAEPAGEPLPPLGY" misc_feature 854940..855314 /gene="mnhC" /locus_tag="AGROH133_04747" /note="NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; Region: Oxidored_q2; cl00492" /db_xref="CDD:186032" gene 855338..856915 /gene="mnhD" /locus_tag="AGROH133_04751" /db_xref="GeneID:10266608" CDS 855338..856915 /gene="mnhD" /locus_tag="AGROH133_04751" /note="subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit D" /protein_id="YP_004278153.1" /db_xref="GI:325292289" /db_xref="GeneID:10266608" /translation="MASSTTSAISDLSAALVTAPVPLSDWLIILPVALSIGAGAVLMM LRHTMRLHAPIAITALVLLVLLDAALLWKVVTQGPFTMVMGRWLPPFGIAFTADLTGT LLSLAAAIVALAGAIHASADIDASGRRYGFYPFLMLLMAGVTGAFLTGDLFNLYVWFE VLLISSFGLIVLGSTREQIDGALKYAILNLIGTTLFLITVGYLYAIFGTLNMADIALK ATQLRGTAPLMTLASLFALAFAMKAAAFPVNFWLPASYHTPRIVVSALFGGLLTKVGI YALLRVMVMLFPVEREELSIVIAISAALTMVLGAMGALAQNDIRRMLGYIVISGIGYM MAGIAIGTPSGVAGAIFYALHSMVLMTALYLAAGHAARLGGSFALTSLGGLYRQAPWF SGLALALFFACSGLPPFSGFWPKVVLVKSAIDIGAWWLAAALLLSGFIATIAFGRVFL LCFWRPAVASTGQAPSLPASPLAAPSFVPLVGLTLLVVFFGLFPESLLNLSQQAAAGL GNPDAYIQSVFPEGSRP" misc_feature 855404..856912 /gene="mnhD" /locus_tag="AGROH133_04751" /note="putative monovalent cation/H+ antiporter subunit D; Reviewed; Region: PRK12663" /db_xref="CDD:183663" misc_feature 855785..856591 /gene="mnhD" /locus_tag="AGROH133_04751" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" gene 856912..857391 /gene="mnhE" /locus_tag="AGROH133_04752" /db_xref="GeneID:10266609" CDS 856912..857391 /gene="mnhE" /locus_tag="AGROH133_04752" /note="subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; Multisubunit Na+/H+ antiporter, MnhE subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit E" /protein_id="YP_004278154.1" /db_xref="GI:325292290" /db_xref="GeneID:10266609" /translation="MSRYILLLLFVGVWLAVSGSVTPANILFGLIVSALALGLIRHQI PKGGRHRLRPVRVLSLLLLFFKELALSAWKVAVMVTRPKLDVQPGIFAYPLRLTTDFE ITLLANLITLTPGTLSVDVSEDKTTLYVHAIDCSNIEAAKNDIRNGFEKKIMEAFQG" misc_feature 856912..857382 /gene="mnhE" /locus_tag="AGROH133_04752" /note="Na+/H+ ion antiporter subunit; Region: MNHE; cl00807" /db_xref="CDD:186198" gene 857388..857774 /gene="mnhF" /locus_tag="AGROH133_04756" /db_xref="GeneID:10266610" CDS 857388..857774 /gene="mnhF" /locus_tag="AGROH133_04756" /note="subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; Multisubunit Na+/H+ antiporter, MnhF subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit F" /protein_id="YP_004278155.1" /db_xref="GI:325292291" /db_xref="GeneID:10266610" /translation="MTPELIVSFATVLATVVLSAAFLLTVYRVVVGPTLPDRIVALDM LVGIAIGFIAVIAIRTGVDLYVDIAIALGLVGFLATVAFARFVLSRGADGRRRTKAVL DGERASEVVEKPEKKVSRRGKRRGGR" misc_feature <857466..857660 /gene="mnhF" /locus_tag="AGROH133_04756" /note="Multiple resistance and pH regulation protein F (MrpF / PhaF); Region: MrpF_PhaF; cl09154" /db_xref="CDD:186841" gene 857771..858103 /gene="mrpG" /locus_tag="AGROH133_04760" /db_xref="GeneID:10266611" CDS 857771..858103 /gene="mrpG" /locus_tag="AGROH133_04760" /note="subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; Multisubunit Na+/H+ antiporter, MnhG subunit" /codon_start=1 /transl_table=11 /product="monovalent cation/H+ antiporter subunit G" /protein_id="YP_004278156.1" /db_xref="GI:325292292" /db_xref="GeneID:10266611" /translation="MMGWIVAILVAALTVSGAAFSLIAAIGLNRLPDVYTRMHAASKA GTVGSGLLLLAVGIHSTEISTLARALAGFFFFVLTAPVSAHLLAMAAHKAGYPLADKS VVDDLKKI" misc_feature 857780..858076 /gene="mrpG" /locus_tag="AGROH133_04760" /note="Na+/H+ antiporter subunit; Region: PhaG_MnhG_YufB; cl00583" /db_xref="CDD:197412" gene 858535..858963 /gene="ros" /locus_tag="AGROH133_04765" /db_xref="GeneID:10266612" CDS 858535..858963 /gene="ros" /locus_tag="AGROH133_04765" /note="ROS/MUCR transcriptional regulator protein; Predicted transcriptional regulator" /codon_start=1 /transl_table=11 /product="Transcriptional regulatory protein" /protein_id="YP_004278157.1" /db_xref="GI:325292293" /db_xref="GeneID:10266612" /translation="MTETAYGNAQDLLVELTADIVAAYVSNHVVPVTELPGLISDVHT ALSGTSAPASVAVNVEKQKPAVSVRKSVQDDHIVCLECGGSFKSLKRHLTTHHSMTPE EYREKWDLPVDYPMVAPAYAEARSRLAKEMGLGQRRKANR" misc_feature 858559..858942 /gene="ros" /locus_tag="AGROH133_04765" /note="ROS/MUCR transcriptional regulator protein; Region: ROS_MUCR; cl11561" /db_xref="CDD:159545" gene 859355..859777 /locus_tag="AGROH133_04766" /db_xref="GeneID:10266613" CDS 859355..859777 /locus_tag="AGROH133_04766" /note="Trp repressor/replication initiator" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278158.1" /db_xref="GI:325292294" /db_xref="GeneID:10266613" /translation="MPSDISSLPAPFRPCVQVADSNFRRFPPAAGRDEISRICRLVRQ LAGEMVQLTGDRVAARRDRRRTECHIRQIAMYVCHVQLGIPMSDIGPCFGRDRTTVGH ACQVVEDRRDEPAFDEFVATLERLSGSIFNVMKGVRDE" misc_feature <859556..859729 /locus_tag="AGROH133_04766" /note="C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571" /db_xref="CDD:119330" misc_feature order(859565..859570,859589..859591,859607..859615, 859637..859651,859658..859660,859667..859672) /locus_tag="AGROH133_04766" /note="DnaA box-binding interface [nucleotide binding]; other site" /db_xref="CDD:119330" gene 859770..860627 /locus_tag="AGROH133_04767" /db_xref="GeneID:10266614" CDS 859770..860627 /locus_tag="AGROH133_04767" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278159.1" /db_xref="GI:325292295" /db_xref="GeneID:10266614" /translation="MSETKSAPAMPPDPVLLRLLRCIAAGTAEISGDRDDMVLQRPEA GNGRTGRPALRFPAATVQLALSSGLIERRENTLSAAPPLASYLKRAIARDRDEIFQEQ HWDLQTVVLDVGKDRQPARRNLNSSPLTGLSRLKEKDGTAFFPSDALQAGERLAADFH RAQLNPKVTATWEPKIASRTKGEAGGKLDLTDAAISARTRFSRAADAMGPELSGVAID ICCFEKGLEAVERERQWPARSAKLLLRAALLSLARHYAPQAQRSRRTSHHWGDEDYRP PMAPTMATE" gene complement(860632..861078) /gene="sufE" /locus_tag="AGROH133_04768" /db_xref="GeneID:10266615" CDS complement(860632..861078) /gene="sufE" /locus_tag="AGROH133_04768" /note="Fe-S metabolism associated domain; SufE protein probably involved in Fe-S center assembly" /codon_start=1 /transl_table=11 /product="Fe-S metabolism associated SufE" /protein_id="YP_004278160.1" /db_xref="GI:325292296" /db_xref="GeneID:10266615" /translation="MAITNGTARNMASLDTILDDFAFLDDWEDRYRYVIELGKALPDL AEDKRTPENKVQGCASQVWLVSHSDGAEDPLMTFEGDSDAHIVRGLVAIVLAVYSGKK ASEIAGLDAIEVFDKIGLVEHLSSQRANGLRSMVKRIREEARLLTA" misc_feature complement(860647..861045) /gene="sufE" /locus_tag="AGROH133_04768" /note="Fe-S metabolism associated domain; Region: SufE; cl00951" /db_xref="CDD:193985" gene complement(861244..861726) /locus_tag="AGROH133_04769" /db_xref="GeneID:10266616" CDS complement(861244..861726) /locus_tag="AGROH133_04769" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278161.1" /db_xref="GI:325292297" /db_xref="GeneID:10266616" /translation="MTQKGRGFKTKIIWQGSLTMWFLIKGTFWFSLVLVALSYFGSSN DPTKEPSAFDIPSAVSAAGEAYRYVSAICIEKPDVCVKGAETFHALGERAKEGAKVAY ELLDAQLASGDKTAPAAELASESEKLAAAPAISVEFPGNADMLKTGTIIPLPQKRPTP " gene 862140..863684 /locus_tag="AGROH133_04771" /db_xref="GeneID:10266617" CDS 862140..863684 /locus_tag="AGROH133_04771" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor sensor histidine kinase" /protein_id="YP_004278162.1" /db_xref="GI:325292298" /db_xref="GeneID:10266617" /translation="MVLRNMRKKAVALVDHAAGRWLARMEEDAERRAGTVARLRRLFA FSAVGFLVVPALFSLVFSPAIALPIGAALVLALYLAAAALLIAFSRPARGAASLSAQA GDDDLVAASQVPGLVLTINENGLVERVSGRDLETFPADLQACKGHVFAEYVYVSDRIE LMQAFDLLRQGEEKSSVELRFETGAKSRQAQFIHARMEMTAIRNAAGRLRRVVAQLSD VTEMELLRRDVARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYFGRL ENDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEAGRYELMMESFPIGETISSCEAMLG LQAKEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAAREGR MLKLTVSDTGIGIASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFA ITSQPGAGTVVTIMLPADGSGMAGGENAETECMVEFPPRIKRLGEMAVIMRKDGDDGP AKAKIA" misc_feature 862857..863060 /locus_tag="AGROH133_04771" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(862875..862877,862887..862889,862899..862901, 862908..862910,862920..862922,862929..862931, 862989..862991,863001..863003,863010..863012, 863022..863024,863031..863033,863043..863045) /locus_tag="AGROH133_04771" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 862893..862895 /locus_tag="AGROH133_04771" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 863223..863534 /locus_tag="AGROH133_04771" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(863241..863243,863253..863255,863262..863264, 863331..863333,863337..863339,863343..863345, 863349..863354,863433..863444,863490..863492, 863496..863498,863511..863516,863520..863522) /locus_tag="AGROH133_04771" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 863253..863255 /locus_tag="AGROH133_04771" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(863343..863345,863349..863351,863433..863435, 863439..863441) /locus_tag="AGROH133_04771" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 863656..864579 /locus_tag="AGROH133_04774" /db_xref="GeneID:10266618" CDS 863656..864579 /locus_tag="AGROH133_04774" /note="Peptidoglycan binding-like; Putative peptidoglycan-binding domain- containing protein" /codon_start=1 /transl_table=11 /product="peptidoglycan binding protein" /protein_id="YP_004278163.1" /db_xref="GI:325292299" /db_xref="GeneID:10266618" /translation="MAPRKRKSPKKTTAQIGAGIVSLVVSAIGRELLRRPKLVGGSGA FVVVFGFVAANALWYQPGVHPSPFLRTRDAANPNGIAGYRAAEPLGTQGHVTTFRIER PSETETAQQPAAATATPATSVAAENQKPQQIVADIQAELKKRGLYEGEADGKMGPRTA AAIMFFEETLGMEQTGEPTTRVLAALRIDGATVAAIPKDRPSDANTGGGVEIDPVAAA IRKAEAPRPKAEPVSLNSAAAASKPVSRDLIAKIQQGLINIAYADVKVDGVAGEQTRN AIRHFEKHYRLPETGEPSEAVLKKLKSIGAL" misc_feature 864052..>864375 /locus_tag="AGROH133_04774" /note="spore cortex-lytic enzyme; Region: spore_SleB; TIGR02869" /db_xref="CDD:131916" misc_feature 864055..864213 /locus_tag="AGROH133_04774" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" misc_feature 864388..864558 /locus_tag="AGROH133_04774" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene 864693..865046 /locus_tag="AGROH133_04777" /db_xref="GeneID:10266619" CDS 864693..865046 /locus_tag="AGROH133_04777" /note="Protein of unknown function DUF1491; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278164.1" /db_xref="GI:325292300" /db_xref="GeneID:10266619" /translation="MRLKSEIFVSALIRRVFSAGGFAAVEKKGAEEAGAIFIRQRLRD GRENLYGPAPQSFAEDEQVRAERRFETRLAGVEGEESTALLERERRFDSDLWVVEIET DEIGTLLTLVDQPKI" misc_feature 864693..865037 /locus_tag="AGROH133_04777" /note="Protein of unknown function (DUF1491); Region: DUF1491; cl11568" /db_xref="CDD:196261" gene complement(865105..866076) /locus_tag="AGROH133_04778" /db_xref="GeneID:10266620" CDS complement(865105..866076) /locus_tag="AGROH133_04778" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278165.1" /db_xref="GI:325292301" /db_xref="GeneID:10266620" /translation="MTDRFRELERPRAVRKKDVVLMATVTNFETVPHPSKTDLRQFAE LFMPLFNASTEEAKREAIAALSQHPNVPSAVAFFIACQPISIAAPFLISSKCLDDDTL ITIARTQGAAHARAIVRREDLSPTVIDALVGLRHMEDLKRPDDATPPAMPEPAIAQPA DAQIKSTAVEEEMRQRIKRMAHQLSRPESDVLGLRRLSDVQEALLVRFARERDARQFA VTLADSLSSSYWLSERIMLDISGTQLATTLIGLGMEFSEAAFILQCFYPHLAAAEGDM SRAEAMLDRLEIIECEERVESWRRADSYTHGRERPNHSAPVIHRTGT" misc_feature complement(865108..866073) /locus_tag="AGROH133_04778" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5330" /db_xref="CDD:34910" misc_feature complement(865180..865821) /locus_tag="AGROH133_04778" /note="Uncharacterized protein conserved in bacteria (DUF2336); Region: DUF2336; pfam10098" /db_xref="CDD:150738" gene 866569..866757 /locus_tag="AGROH133_04779" /db_xref="GeneID:10266621" CDS 866569..866757 /locus_tag="AGROH133_04779" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278166.1" /db_xref="GI:325292302" /db_xref="GeneID:10266621" /translation="MAVIIPIAEARRSLRPAGMSGKVMGPAKVVLFTGVRYEKRDTEP AGKDARKRKPAPETAFKS" gene complement(866778..867326) /locus_tag="AGROH133_04780" /db_xref="GeneID:10266622" CDS complement(866778..867326) /locus_tag="AGROH133_04780" /note="Uncharacterised conserved protein UCP010244, integral membrane protein; Predicted integral membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278167.1" /db_xref="GI:325292303" /db_xref="GeneID:10266622" /translation="MLRTLLAILTGLVAAAVLHVVILLAIPHFSNRDAYTRALAEGKP HQFHLLEETTEKKTLGSGDPFMRVAVCTFNIEEKPVRLTAIGAVPFWSVAVYDKASNE VFSMNDRTSAGGVMDILVADSVQIAAIRKAQPPSLSQAILAESDQTEGYVVLRTMVPQ PSFGEEAERFLNEAKCQPTPWK" misc_feature complement(866790..867320) /locus_tag="AGROH133_04780" /note="Protein of unknown function (DUF1254); Region: DUF1254; cl02257" /db_xref="CDD:194285" gene complement(867319..868041) /locus_tag="AGROH133_04783" /db_xref="GeneID:10266623" CDS complement(867319..868041) /locus_tag="AGROH133_04783" /note="Protein of unknown function DUF1214; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278168.1" /db_xref="GI:325292304" /db_xref="GeneID:10266623" /translation="MVDGGLSRHGGIPLLVISIKTKQGVPFSKQGISDSPRPVQKREN SVFRVPFLVGIALLIAFGGGIAATLAALEATSGFGSIRIGSWDAFPEAQTIEADPYAK SHRADAGKLLYGTAEGLAFTASFDSDGQRLTGECRYQLAGAVPPSRFWTLYTADQQGN VLAEDAGRPFALNSRTLLRSADGGIDITIAPDAQTYNWLAVPQGQTFKLVMTLLDTPV AGSSGLIDIAMPQIRKLGCGNA" misc_feature complement(867325..867903) /locus_tag="AGROH133_04783" /note="Protein of unknown function (DUF1214); Region: DUF1214; cl08447" /db_xref="CDD:158336" gene 868015..869403 /locus_tag="AGROH133_04785" /db_xref="GeneID:10266624" CDS 868015..869403 /locus_tag="AGROH133_04785" /note="Peptidase family M20/M25/M40; Acetylornithine deacetylase/Succinyl- diaminopimelate desuccinylase and related deacylases" /codon_start=1 /transl_table=11 /product="peptidase" /protein_id="YP_004278169.1" /db_xref="GI:325292305" /db_xref="GeneID:10266624" /translation="MSRQAAIDHATRFFDDGRFEQDLARRVSLRTESQDEARGAELAL YLEREMQPAFTAMGFSCTILRDPAADLPFLIAERFEGENLPTVLGYGHGDVVRGLDDG WAEGLSPFVMSERNGRWYGRGTADNKGQHSVNMAALKTVLETRGRLGFNAKYLIEMGE ERGSPGLREVCRDYSERLKADLLIASDGPRLNAERPTVFLGARGGITFDLVIEAREGG HHSGNWGGALSNPGVQLAHAMASLVGPSGQIRVPELVPKELPQAARDALADCEIDGGP DGPKIDPDWGEPGLSTAERVFGWCALEVLAFETGNPRAPVNAIPPRAWARLQLRFVVG IDPEAVLPAIRRHLDRQGFSMVRIVPAGDEIFRATRLDPQDPWVGFTLSSMARTTGKK PALLPNLGGSLPNDIFADILKLRTIWVPHSYPGCSQHAPNEHLPKEIAREALAIMAGL YWDLGEGDTPPF" misc_feature 868054..869394 /locus_tag="AGROH133_04785" /note="Uncharacterized M20 Dipeptidases; Region: M20_dipept_like_2; cd05679" /db_xref="CDD:193554" misc_feature 868075..869385 /locus_tag="AGROH133_04785" /note="Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]; Region: ArgE; COG0624" /db_xref="CDD:30969" misc_feature order(868288..868290,868390..868392,868492..868497, 868573..868575,869299..869301) /locus_tag="AGROH133_04785" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193554" misc_feature order(868621..868623,868633..868635,868639..868641, 868651..868668,868672..868692,868708..868716, 868720..868722,868729..868734,868741..868743, 868867..868869,868888..868890,868897..868902, 868915..868938,868948..868971,868990..868992, 868996..868998,869002..869004,869212..869217, 869296..869307) /locus_tag="AGROH133_04785" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:193554" gene complement(869400..870008) /gene="lysE" /locus_tag="AGROH133_04786" /db_xref="GeneID:10266625" CDS complement(869400..870008) /gene="lysE" /locus_tag="AGROH133_04786" /note="Lysine exporter protein (LYSE/YGGA); Lysine efflux permease" /codon_start=1 /transl_table=11 /product="LysE family transporter" /protein_id="YP_004278170.1" /db_xref="GI:325292306" /db_xref="GeneID:10266625" /translation="MDIQIFFTGLTMGLSLIVAIGAQNAFVLKQGLARSHVFAVCATC AISDALLITVGVFGFQRISAVMPALDPIMRYAGAAFLIWYGAKSLHSALRSSEVLSVA ERREASLWQTLAICLALTFLNPHVYLDTVVLLGTISTQFPGFEKTFAAGAATGSLLFF FSLGYGARWLRPIFEKPSAWRILEGVIAFTMWAIAFKLVMGA" misc_feature complement(869415..870002) /gene="lysE" /locus_tag="AGROH133_04786" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene 870298..871197 /gene="oriC" /locus_tag="AGROH133_04792" /db_xref="GeneID:10266626" CDS 870298..871197 /gene="oriC" /locus_tag="AGROH133_04792" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004278171.1" /db_xref="GI:325292307" /db_xref="GeneID:10266626" /translation="MLDYPSMRAVALVAQTGSFEKAAQVLCVTPSAVSQRIKQLEERL GVVLIVRGNPCVATEKGEWLCRHMDHVGMLETELFRQLPVLSEAGAAAERVTLNIATN ADSLCTWFLDAVSKFTGGSDYLVNIAVDDQDHTVEWLRGGRVLAAVTAHAKPVQGCRV LALGVLRYHATASPAFMARHFSDGVTPATLARAPGLTFNQKDRLQASWIKKALGEDIS YPTHWLPSTDGFVKASLAGMGWGLNPVQLVGEHLQAGRLVEVVPGTPLDIPLYWQVNR LAAERLGTLTAHVVETARAALLS" misc_feature 870298..871188 /gene="oriC" /locus_tag="AGROH133_04792" /note="chromosome replication initiation inhibitor protein; Validated; Region: PRK03635" /db_xref="CDD:179616" misc_feature 870316..870483 /gene="oriC" /locus_tag="AGROH133_04792" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 870583..871164 /gene="oriC" /locus_tag="AGROH133_04792" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(870628..870633,870637..870642,870649..870651, 870661..870663,870670..870690,870958..870975, 870991..870996,871000..871005) /gene="oriC" /locus_tag="AGROH133_04792" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(871204..871662) /locus_tag="AGROH133_04794" /db_xref="GeneID:10266627" CDS complement(871204..871662) /locus_tag="AGROH133_04794" /note="Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="lactoylglutathione lyase protein" /protein_id="YP_004278172.1" /db_xref="GI:325292308" /db_xref="GeneID:10266627" /translation="MVKVKALFETHLTISNLERSVEFYRNVVGLELAQRFPERNVAFF WTGERGHSMLGLWSIQSAPINMRLHIAFSVDFDQLLAAPDYLRRNGVTPLGFDGENEI DEPVVFPWMPAASVYFKDPDGHSLEYIAFLGGEAKPQIPRVLNWSEWQTI" misc_feature complement(871273..871644) /locus_tag="AGROH133_04794" /note="This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632" /db_xref="CDD:196803" misc_feature complement(order(871282..871284,871288..871290, 871312..871314,871456..871458,871492..871494, 871498..871500,871540..871542,871624..871626, 871636..871638)) /locus_tag="AGROH133_04794" /note="active site" /db_xref="CDD:176657" misc_feature complement(order(871282..871284,871456..871458, 871636..871638)) /locus_tag="AGROH133_04794" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176657" gene complement(871844..874039) /gene="pbp" /locus_tag="AGROH133_04795" /db_xref="GeneID:10266628" CDS complement(871844..874039) /gene="pbp" /locus_tag="AGROH133_04795" /note="Penicillin-binding protein 1A; Membrane carboxypeptidase (penicillin-binding protein)" /codon_start=1 /transl_table=11 /product="penicillin binding protein" /protein_id="YP_004278173.1" /db_xref="GI:325292309" /db_xref="GeneID:10266628" /translation="MQEEKDDKNGRKKRHILLRIDSFIDSGLWTAAARLVDFWEDVTI ASRKLHVRGWKKLLVNLTCDALTFGTAGCVVLLALAMPAFEETKKDWRYRGDFAVTFL DRYGNTIGHRGIIHEDSVPIDQMPDHFIKAVLATEDRRFFDHFGIDFIGLARAMSENA RAGGVVQGGSTLTQQLAKNLFLTNERSLERKIKEAFLALWLEANMSKKEILSLYLDRA YMGGGTFGAAAAAQFYFGKNLTDVTLAESAILAGLFKAPAKYAPHVNLPAARARANTV LSNLVQSGLMTEGQVIGARRNPATVIDRADVKAPDYFLDWAFDEVQRLAAQGRFKDHT VVVRTTIDTGLQQAAEQAMEMELREYGEGYRVKQGAMVMIENGGALRAMVGGRDYGES QFNRATAALRQPGSSFKVYTYSAAMEKGMKPETLISDAPVTWRGWSPQNYGRSYAGKV TLQVALAKSYNTVPVRLAKDVLGTQVIVDTAKAMGVATPLRSDKTIPLGTSELTVLDQ ATAYAVFPADGMQSRRHGIEQVLDYEGKVLYDFGRDEEPAKRVLSEEANSKMNQMLVT IPVMGTARRGALENGIVSGGKTGTSQAYRDAWYVGFTGNYTTAVWFGNDDFTPMNNMT GGALPAMTFKRLMDYAHQGMELRPIPGIQNPLPTGARPQPSAQVAAASATAAPAMPAL TRPRSLSAEATRVIRSIAKKMKEAAPLTVTTQKVADASLRDGPGDAARR" misc_feature complement(873197..873724) /gene="pbp" /locus_tag="AGROH133_04795" /note="Transglycosylase; Region: Transgly; cl07896" /db_xref="CDD:195645" misc_feature complement(872111..873682) /gene="pbp" /locus_tag="AGROH133_04795" /note="penicillin-binding protein, 1A family; Region: PBP_1a_fam; TIGR02074" /db_xref="CDD:188197" misc_feature complement(872126..872935) /gene="pbp" /locus_tag="AGROH133_04795" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene 873995..874195 /locus_tag="AGROH133_04797" /db_xref="GeneID:10266629" CDS 873995..874195 /locus_tag="AGROH133_04797" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278174.1" /db_xref="GI:325292310" /db_xref="GeneID:10266629" /translation="MPLFATVFIVFFFLHLAMFSCSTQRGLSMFLRFIQFRTQNHDMV LLELLDAAASRGSMTLCHSPKC" gene 874286..874774 /locus_tag="AGROH133_04799" /db_xref="GeneID:10266630" CDS 874286..874774 /locus_tag="AGROH133_04799" /note="Uncharacterised conserved protein UCP006173; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278175.1" /db_xref="GI:325292311" /db_xref="GeneID:10266630" /translation="MLTMNEAPFWKTKSLEEMSGQEWESLCDGCGLCCLNKLEDWDTG EVVFTSVRCQLLDGESCRCSDYENRRATVPDCIQLDLKKVHEIGWLPPTCAYALVRDG KDLYWWHYLVSGDVNTVHQAGISARGRTVNELDVEVDDFEDYVVDWPLTVGETAGEKE NS" misc_feature 874295..874675 /locus_tag="AGROH133_04799" /note="Flagellin N-methylase; Region: FliB; cl00497" /db_xref="CDD:186037" gene 874925..875746 /gene="oxa" /locus_tag="AGROH133_04800" /db_xref="GeneID:10266631" CDS 874925..875746 /gene="oxa" /locus_tag="AGROH133_04800" /EC_number="3.5.2.6" /note="Beta-lactamase-type transpeptidase fold, Penicillin binding protein transpeptidase domain" /codon_start=1 /transl_table=11 /product="Beta-lactamase class D" /protein_id="YP_004278176.1" /db_xref="GI:325292312" /db_xref="GeneID:10266631" /translation="MRYRLPAIVLSCIALQGILPLSASAQQSQAFECTLVTSIETGAV INQQGACDQRVAPASTFKVPLALIGYDAGILLDDKTPAWDWKPGTEARAQDRKTVDPT IWEQDSVLWYSRELTRRLGPEKFAAYVKRLGYGNADVSGEPGKNNGLTHSWLGASLTV SPVEQVGFIRRLLAGNLPVSRDAQAKTRAIVPVFDAPESWSVHGKTGTGFMRDEKGNP DRSRPFGWFVGWAEREGQHIVFARLRVADKPSSEPLGPAVRDAFLRDIARLAVHR" misc_feature 874934..875737 /gene="oxa" /locus_tag="AGROH133_04800" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene 875781..876389 /locus_tag="AGROH133_04802" /db_xref="GeneID:10266632" CDS 875781..876389 /locus_tag="AGROH133_04802" /note="2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- benzoquinol methylase" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_004278177.1" /db_xref="GI:325292313" /db_xref="GeneID:10266632" /translation="MADASNDVIKLYTDHGVDFDRLRGRSLAEKPWLDRFTSLLPQGG SILDIGCGSGEPIAGYFIGNGYDVTGIDTSYPLIEICRTRFPEKRWVVADMRELVLSC RFDGLIAWHSFFHLKADDQRRMFGIFRQHANDGAALMFTAGPGHGEATGTLQGKPLYH ASLAREEYESLLAAHGFLLLDHIVNDPDCGGATIYLARRVAA" misc_feature 875916..876203 /locus_tag="AGROH133_04802" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(875925..875945,875994..875999,876057..876065, 876108..876110) /locus_tag="AGROH133_04802" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 876530..876955 /gene="cueR" /locus_tag="AGROH133_04803" /db_xref="GeneID:10266633" CDS 876530..876955 /gene="cueR" /locus_tag="AGROH133_04803" /note="CueR: Cu(I)-responsive transcriptional regulator; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_004278178.1" /db_xref="GI:325292314" /db_xref="GeneID:10266633" /translation="MNIGQASDASGVSAKMIRYYEQIGLITPAARTGNNYRVYGEQDV HNLRFIKRARTLGFSLEETETLLKLWQDKSRESSAVKDIALGHIADLEQKIAEMKGMV KTLSHLAHCCGGDHRPDCPILDDLAAGVEKAAHKPAKAH" misc_feature 876530..876910 /gene="cueR" /locus_tag="AGROH133_04803" /note="Cu(I)-responsive transcriptional regulator; Region: CueR; TIGR02044" /db_xref="CDD:131099" misc_feature 876530..876910 /gene="cueR" /locus_tag="AGROH133_04803" /note="Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators; Region: HTH_CueR; cd01108" /db_xref="CDD:133383" misc_feature order(876533..876541,876581..876583,876632..876640) /gene="cueR" /locus_tag="AGROH133_04803" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133383" misc_feature order(876674..876676,876683..876685,876695..876700, 876725..876727,876737..876739,876758..876763, 876770..876772,876779..876781,876791..876793, 876809..876811,876821..876823,876830..876835, 876854..876856,876869..876883,876887..876889, 876893..876895,876902..876907) /gene="cueR" /locus_tag="AGROH133_04803" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133383" misc_feature order(876758..876760,876863..876865,876887..876889) /gene="cueR" /locus_tag="AGROH133_04803" /note="copper binding site [ion binding]; other site" /db_xref="CDD:133383" gene complement(876984..877232) /locus_tag="AGROH133_04805" /db_xref="GeneID:10266634" CDS complement(876984..877232) /locus_tag="AGROH133_04805" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278179.1" /db_xref="GI:325292315" /db_xref="GeneID:10266634" /translation="MDRKKITPLNEDAMDEELLDLDIDALPAKGEIPQSIEHEIEEEE AESEDDPYQESDEALPDDAEERVIDRNPSREGGAFDEV" gene 877333..878796 /locus_tag="AGROH133_04806" /db_xref="GeneID:10266635" CDS 877333..878796 /locus_tag="AGROH133_04806" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004278180.1" /db_xref="GI:325292316" /db_xref="GeneID:10266635" /translation="MTSMVLEVLVCPPYRKNGKDTALTSMEMMEKNSWSELLGGANLS LLTVISSGIGLHAFNQFAVVAALPVAVREIGGAAFYSWAYSLYFVGSVAGGVTAVLFR ERFGARSVLFLCCLIFSFGSVMSALADSFLWVVIGRALQGLADGLIVAVCYSLIPAGF RSALLPKVFAIEAAIWAVASFVGPLTGGFATEHISWRATFLLSAPLIVLLLAYTAIAV SAERSVATSRKPMVPLRLCLVGALAFSAPSAFEDAGLRIMSLLVGAALLWASLKAGIR PSSGLFPRDSFQLKTVLGSGFWVLFLMSYAHALGSVYLAYVAINLWHHEPTFAGFIVV TMPLAWSFVAMLIGSLRSGRLRQLCLHYGPYQMVPGCALLGLGLATGNWPEMLIGQIL IGAAFGMSWAGISQAAMEAAPEEERKMTGALLPTVATLGAAAGAGASGTVAAASDLVL QIDRADVTMPMLYLYGLGVIVSLLAILTTRGLRSGQR" misc_feature 877468..>877932 /locus_tag="AGROH133_04806" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(877510..877512,877519..877527,877531..877536, 877582..877584,877591..877596,877603..877605, 877615..877620,877624..877629,877765..877770, 877777..877782,877789..877794,877801..877803, 877837..877842,877849..877854,877870..877872) /locus_tag="AGROH133_04806" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(878819..878992) /locus_tag="AGROH133_04821" /db_xref="GeneID:10266636" CDS complement(878819..878992) /locus_tag="AGROH133_04821" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278181.1" /db_xref="GI:325292317" /db_xref="GeneID:10266636" /translation="MTKISDSRDPILFPTEANENKTEKKRAGKGVVIIIGAVAIMAFV VYLAAITIATTQS" gene complement(879050..880768) /gene="cscA" /locus_tag="AGROH133_04823" /db_xref="GeneID:10266637" CDS complement(879050..880768) /gene="cscA" /locus_tag="AGROH133_04823" /EC_number="3.2.1.26" /note="glycosyl hydrolases family 32 N terminal; Beta-fructosidases (levanase/invertase)" /codon_start=1 /transl_table=11 /product="sucrose hydrolase" /protein_id="YP_004278182.1" /db_xref="GI:325292318" /db_xref="GeneID:10266637" /translation="MTVVEAVAAEPESAIRILHTDLPVNATFHVWLKAKKPAEPGAVS FSNANGKFAEVSSLNTEEFGFRIYQVFGGGHVELSYDTVTTAVSVIYWFTAADVLETG ITVVHTKPDNAAPELPDSYHFRPPFGWMNDPNGFGRFEGRPHLFYQHYSHGLRWNTMH WGHAVSSDYLRWRHLPIFLFPSEDLTTRPDKRGGAYSGSTIPLVEGSGIRVFFTEQVQ DRIPEQQIQLTATSSDLIMAGQAEVILGHRPDGQGLTPDFRDPYVFRGPDGLWKMLLG SQSDGGGVILLYETLDPTAASGWTYVGKLWVETRYKTTAIECPCLLPLDGPANARSTR WVLVYGLMHSEDPETGRKNLTMADVGWFDGKIFTKEFGQELDFGTDNYAFQAFLDGDS IIGIGWLANWADANPEIDFPTSMTLPRRIHYSNGELLTPPIGAAESLRSHIVDRTRLA AGERVTFINGAVEMLIELASPGTPFELVLDHPVVTLGLIADETGLWIRHDDGRDGPSP HYIARGARASHIRVFLDYGSIEVFANRGRYVGTKRIEGFEPVRSALLKAAPGAVVHAT SWALRP" misc_feature complement(879053..880426) /gene="cscA" /locus_tag="AGROH133_04823" /note="Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]; Region: SacC; COG1621" /db_xref="CDD:31808" misc_feature complement(879479..880387) /gene="cscA" /locus_tag="AGROH133_04823" /note="Glycosyl hydrolase family 32, beta-fructosidases; Region: GH32_B_Fructosidase; cd08996" /db_xref="CDD:185737" misc_feature complement(order(879818..879820,879989..879994, 880178..880183,880325..880327,880373..880378)) /gene="cscA" /locus_tag="AGROH133_04823" /note="substrate binding [chemical binding]; other site" /db_xref="CDD:185737" misc_feature complement(order(879818..879820,879989..879991, 880373..880375)) /gene="cscA" /locus_tag="AGROH133_04823" /note="active site" /db_xref="CDD:185737" gene complement(880832..881935) /locus_tag="AGROH133_04824" /db_xref="GeneID:10266638" CDS complement(880832..881935) /locus_tag="AGROH133_04824" /note="HWE histidine kinase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="Signal transduction histidine kinase protein" /protein_id="YP_004278183.1" /db_xref="GI:325292319" /db_xref="GeneID:10266638" /translation="MNEPQCKQDKFVPEFPYDDSEMGEAIRRFDWASTSTGPIETWPV SLKTTVQMILKQGHAICLFWGPDLNIVYNDAYRPFLGLKEEGALGKPFHIIWSDVWND VKPFVDQALSGKGTFAEDMHLVMDRNGYPEDTYWTFSYSPLYDDQGKIAGLIDIAVDT TGAVQSRSREDLLRRELVHRVKNTMAITTAVVSATLRHSQTLEDARDTIKRRIAALGN AQNLIHASGKGASISALVRESVYPHLDDKARVTISGPDMEIAPQQALGLSLAIYELAT NAMKYGALSNESGKIEIFWTLDEDDRFELRWRETDGPAVRTPTRTGFGSRLTNQIVAA YFSGEGRTFYHPDGLLFELDGKYEAGDGETSGG" misc_feature complement(881453..881761) /locus_tag="AGROH133_04824" /note="PAS fold; Region: PAS_4; pfam08448" /db_xref="CDD:117025" misc_feature complement(880874..881401) /locus_tag="AGROH133_04824" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG3920" /db_xref="CDD:33706" misc_feature complement(881168..881401) /locus_tag="AGROH133_04824" /note="Histidine kinase; Region: HisKA_2; cl06527" /db_xref="CDD:157259" gene 882077..883540 /locus_tag="AGROH133_04825" /db_xref="GeneID:10266639" CDS 882077..883540 /locus_tag="AGROH133_04825" /note="Protein of unknown function UPF0061; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278184.1" /db_xref="GI:325292320" /db_xref="GeneID:10266639" /translation="MITFDNSYARLPERFSAAVLPTPVKAPRLIAFNRALADELLLDV SGLDDDRLAAIFSGNVVPQGAEPLAMAYAGHQFGGFVPKLGDGRAILLGEVIDKHGKR RDIQLKGSGPTPFSRRGDGRAALGPVLREYIVSEAMFALGVPATRALAAVLSGDRVQR EVGLPGGVFTRVAASHIRVGTFQFFAAREDDEGIRNLADYVIDRHYPEAKNADNPYLA LLQGIAQRQCELIARWMMVGFIHGVMNTDNMAISGETIDFGPCAFLDEYNSNKVFSSI DAQGRYAFNNQPGIAQWNIARLAECLLPLLDPQVEKAAELANAVLADFAAAFPKRWLA GMREKLGLTGEEEGDIELVQALLSLMQASEADYTLTFRRLSHAVEGDAEPFRGMFIDI AAADAWLARWQERAGQEGVSASERSRAMLAVNPAIIPRNHRIEELIEAAVEDGDFEPF HAMLAAIATPFEERPDNFVYMQPPMSDEKVFRTFCGT" misc_feature 882083..883537 /locus_tag="AGROH133_04825" /note="Uncharacterized conserved protein [Function unknown]; Region: COG0397; cl00428" /db_xref="CDD:193814" misc_feature 882137..883459 /locus_tag="AGROH133_04825" /note="Uncharacterized ACR, YdiU/UPF0061 family; Region: UPF0061; pfam02696" /db_xref="CDD:111578" gene complement(883678..884778) /locus_tag="AGROH133_04826" /db_xref="GeneID:10266640" CDS complement(883678..884778) /locus_tag="AGROH133_04826" /EC_number="1.5.1.7" /note="Saccharopine dehydrogenase and related proteins" /codon_start=1 /transl_table=11 /product="Saccharopine dehydrogenase" /protein_id="YP_004278185.1" /db_xref="GI:325292321" /db_xref="GeneID:10266640" /translation="MKNIVVIGAGNIGSAIAWMLAVTGDYRITVADRSADQLTNVPAH ERVDTEIVDIGDRPALEALLKGKFAVLSAAPFHLTAGIAEAAVTVGTHYLDLTEDVES TRKVKALAETAETALIPQCGLAPGFISIVAADLAARFDKLDSVRMRVGALPQYPSNAL NYNLTWSTDGLINEYIEPCEAIVEGRLTAVPALEEREEFSLDGVTYEAFNTSGGLGTL CATLEGKVRTMNYRTIRYPGHVAIMKALLNDLNLRNRRDVLKDLFENALPGTMQDVVI VFVTVCGTRNGRFLQETYANKVYAGPVSGRMMSAIQITTAAGICTVLDLLAEGALPQK GFVRQEEVALPKFLENRFGRYYGAHEPLARVG" misc_feature complement(883681..884778) /locus_tag="AGROH133_04826" /note="Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]; Region: LYS9; COG1748" /db_xref="CDD:31934" misc_feature complement(<884647..884772) /locus_tag="AGROH133_04826" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 884926..885357 /locus_tag="AGROH133_04827" /db_xref="GeneID:10266641" CDS 884926..885357 /locus_tag="AGROH133_04827" /note="Bacterial regulatory proteins, AsnC/Lrp; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AsnC family" /protein_id="YP_004278186.1" /db_xref="GI:325292322" /db_xref="GeneID:10266641" /translation="MTIADKDRALLALLSENARMPVAELARKLGLSRTTVQARIERLE AEGVIAGYGLRLSESYLSGLVRAHVLITIGPKALPGVTAALTAIKEVTTLHSVSGSFD LIAILAAPSILDLDRLIDRIGALDGVERTLSSIILSTRISR" misc_feature 884932..885252 /locus_tag="AGROH133_04827" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(885461..885832) /locus_tag="AGROH133_04829" /db_xref="GeneID:10266642" CDS complement(885461..885832) /locus_tag="AGROH133_04829" /note="Helix-turn-helix, HxlR type; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="HxlR family transcriptional regulator" /protein_id="YP_004278187.1" /db_xref="GI:325292323" /db_xref="GeneID:10266642" /translation="MEHVYDVYEDRCPTRMVLDRIADKWALLILDKLRVNAVRFNLLR REIKGISQKVLSQTLKKLERDGLISRQAFPTVPVTVEYSLTPLGRTLTDTVAALAHWA EGNMDAVLAAQKAYDERGGLG" misc_feature complement(885476..885820) /locus_tag="AGROH133_04829" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 885975..886814 /locus_tag="AGROH133_04830" /db_xref="GeneID:10266643" CDS 885975..886814 /locus_tag="AGROH133_04830" /note="NmrA-like; Predicted nucleoside-diphosphate-sugar epimerases" /codon_start=1 /transl_table=11 /product="NmrA family protein" /protein_id="YP_004278188.1" /db_xref="GI:325292324" /db_xref="GeneID:10266643" /translation="MTGKILVIGSTGTIGTPLVKALLAKGESVKAASRTGKAAEGAEG VRFDYTDASTYTDAFDGVDRLFLILAGGRLDAIDALTPVVEEAARRNVKIVFLSVFGV DADDSIPYRQVELKIIASGAPYVILRPNWFADNFHTYWKAGIEHGQIAVPAGEGKSSF IDVRDIADSAAAALTSTAFDNKAFNLTGPKALSYGEAAAIISQAIGKPVGYSAVSDDV FIGILTGAGVPKDYAAFLASIFYPVREGWTSAVTGDVETLTGHAPRSLETYVADHVAA LKD" misc_feature 885981..886754 /locus_tag="AGROH133_04830" /note="Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702" /db_xref="CDD:31046" misc_feature 885987..886772 /locus_tag="AGROH133_04830" /note="triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs; Region: TMR_SDR_a; cd05269" /db_xref="CDD:187578" misc_feature order(885999..886001,886005..886016,886074..886079, 886113..886124,886176..886187,886362..886370, 886461..886463) /locus_tag="AGROH133_04830" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187578" gene complement(886841..888481) /locus_tag="AGROH133_04831" /db_xref="GeneID:10266644" CDS complement(886841..888481) /locus_tag="AGROH133_04831" /note="Uncharacterised conserved protein UCP007542; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278189.1" /db_xref="GI:325292325" /db_xref="GeneID:10266644" /translation="MFAGLSATGIVFGTILFCASLTPSLLPRTWLMQGVLCGFSFAIG YLIGVALTAIWTYLELPHPSRHNRRSIRFLIALASAITAIAFLWQAKDWQNSIRILME LDPLPSAHPTKTGGVAVLVSALLIGAGRLFQLIRRFFSVRSRHFLPRRLANVLGIAAA IVLSWMLLNGLIFDIGLKFADSSLKQVDALIEPDVPRPSDALKTGSSASLMTWESLGR RGREFVAGGPEAQEISAFTHRPAREPLRVYAGLNSAATPEERAALALEELKRVGGFER KVLLVVIPTGTGWIDPEALDTVEYLHDGDIASVAVQYSYLSSWIALLTEPDYGVETAR ALFQAVYGYWTTLPKETRPKLYLHGLSLGSLNSQKSSDLYDVLSDPFQGALWSGPPFS SPTWRMATNGRVAGTPEWLPRFRDSSVIRFANQYTTAHMPDAKWGPMRIVYLQYASDP ITFFEAASLYRRPQWMVHHGPDVSTSFRWFPVVTLLQLGLDVAAATTAPIGYGHVYAP EHYIDAWMEVTAPQGWNADDIQRLKMLFKARRGSTDPA" misc_feature complement(886853..888481) /locus_tag="AGROH133_04831" /note="Predicted membrane protein [Function unknown]; Region: COG4425" /db_xref="CDD:34121" misc_feature complement(886883..888469) /locus_tag="AGROH133_04831" /note="Predicted membrane protein (DUF2319); Region: DUF2319; pfam10081" /db_xref="CDD:150723" gene 888735..889262 /locus_tag="AGROH133_04836" /db_xref="GeneID:10266645" CDS 888735..889262 /locus_tag="AGROH133_04836" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278190.1" /db_xref="GI:325292326" /db_xref="GeneID:10266645" /translation="MANIRNCDLALHGVWQESCAYGGEGRLEAAPEIKSRADKLAAED AARNGNLRQLLNELTVEMREQFCMYRNLRQTSEAAFLSTVEDASGKQARADVKAATDQ LSLIVRTLERIDALQRVLAEERQALAGEDEADTEDYEMAVAHFLKRIDELAEQKCRAR LEADLARSASTEADT" gene 889259..890518 /locus_tag="AGROH133_04837" /db_xref="GeneID:10266646" CDS 889259..890518 /locus_tag="AGROH133_04837" /note="Terminase-like family; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="large terminase phage packaging protein" /protein_id="YP_004278191.1" /db_xref="GI:325292327" /db_xref="GeneID:10266646" /translation="MTDVSSEPQLQKQVFTLLRDWRFIGNLPQQPPEGDWRTWLLIGG RGSGKTRAGAEWVHRIASAGKQSDLRIALVAETLGDAREVMIDGISGICRIARRCRPA FEVSRRRLIWPNGAMAQVFSSEDPESLRGPQFHMAWADELGKWKYPQETWDMLQFGLR LGEAPRQLVTTTPRPIPLLKALLADPSSRVAKMPTAMNAQNLSPGFLKAMHDRYGGTR LGRQEIGGELIDEREGALWKRADLEAIVETDHEPLARIVVAVDPPAGIGENSCCGIVA AGLGISGKLVVLADCSVEGETPAGWARAVVAAVRRHEGDRVVAEVNQGGEMVRAMLQS IDANLPLTLVRASRGKFTRAEPVAALYEQGRVRHAAQFEKLTDQMADFGPDGLSSGRS PDRLDALVWAITALTTTVASEPRVRGM" misc_feature 889274..890515 /locus_tag="AGROH133_04837" /note="Uncharacterized conserved protein [Function unknown]; Region: COG5323" /db_xref="CDD:34905" gene 890968..891606 /locus_tag="AGROH133_04838" /db_xref="GeneID:10266647" CDS 890968..891606 /locus_tag="AGROH133_04838" /note="glycoside hydrolase, family 19, catalytic" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278192.1" /db_xref="GI:325292328" /db_xref="GeneID:10266647" /translation="MAYDEARFFASVRISIYGGRLRATQLDGTKTILAGFGKALPGGD PRWLAYMLATTFHETAATMQPVRETLAANDAEAIARLDRAFAAGRLPMVRKPYWRPDA EGKSWLGRGFVQLTHRRNYEAMSQLIGVDLLERPERAMEPDVATAILIHGMIAGSFTG RKLADVFEGKREDWEGARAIINGRDRARLVGDYGRAFHRALLAARIEPARAR" misc_feature <891259..>891411 /locus_tag="AGROH133_04838" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" gene 891650..891973 /locus_tag="AGROH133_04839" /db_xref="GeneID:10266648" CDS 891650..891973 /locus_tag="AGROH133_04839" /note="Stress responsive alpha-beta barrel" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278193.1" /db_xref="GI:325292329" /db_xref="GeneID:10266648" /translation="MTGDTVIRHIVFFTVPEENRDAVRKGLSGLTAIPHSLKLEIGEN VKKDQWGNSVDFIVYGEFENEAALAAYKADPAYDLSTRTVKPLRETRVAADFNSDTAV KAPIR" misc_feature 891668..891943 /locus_tag="AGROH133_04839" /note="Stress responsive A/B Barrel Domain; Region: Dabb; pfam07876" /db_xref="CDD:149121" gene 892160..893326 /gene="gp34" /locus_tag="AGROH133_04840" /db_xref="GeneID:10266649" CDS 892160..893326 /gene="gp34" /locus_tag="AGROH133_04840" /note="Phage portal protein; Phage-related protein" /codon_start=1 /transl_table=11 /product="phage head portal protein" /protein_id="YP_004278194.1" /db_xref="GI:325292330" /db_xref="GeneID:10266649" /translation="MRFPFSLPWRRPADGRAVPERKTAAGGFMAVAAQGGQAFWSGRS YAALAREGFMKNPVAHRAARMVAEASASVSWLLYDGDEEIGDHPLLALLGKPSAHMGG PDFFETLYGHLMLAGNAYIEPLVVGERLRELHLLRPDRVSIIEGADGWPVGYDYRAEG RAIRRIAAERDGLGLLHLKLFHPLDDRAGFAPLASAGAALDLHNAASQWNKRLLDNSA RPSGALVYQPKEGGNLSTEQYERLKRELEEGYQGAMNAGRPLLLEGGLDWKAMGLSPR DMDFLEARNGAARDIALALGVPPMLIGIPGDNTYANYQEANRAFYRLTVLPLVNRTAA RLCGWLSPIFGSGLRLEPDLDRIAGLAGERDALWTRIGAASFLTDEEKREAVGY" misc_feature 892175..893323 /gene="gp34" /locus_tag="AGROH133_04840" /note="Phage-related protein [Function unknown]; Region: COG4695; cl01923" /db_xref="CDD:194210" misc_feature 892277..893320 /gene="gp34" /locus_tag="AGROH133_04840" /note="Phage portal protein; Region: Phage_portal; pfam04860" /db_xref="CDD:147162" gene 893514..893834 /locus_tag="AGROH133_04841" /db_xref="GeneID:10266650" CDS 893514..893834 /locus_tag="AGROH133_04841" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278195.1" /db_xref="GI:325292331" /db_xref="GeneID:10266650" /translation="MSEFANEGGIWAARITGAVAGAGVSLVYLLPKSKREAASRFVTG VSCGMIFGGPVGLWIVQQLEIAGALSGREIMVAGSAAASMVAWWGLGLLVRVADRYNA RPRA" gene 893876..894466 /gene="gp35" /locus_tag="AGROH133_04845" /db_xref="GeneID:10266651" CDS 893876..894466 /gene="gp35" /locus_tag="AGROH133_04845" /note="Peptidase U35, phage prohead HK97, Caudovirus prohead protease; Phage head maturation protease" /codon_start=1 /transl_table=11 /product="phage prohead protease" /protein_id="YP_004278196.1" /db_xref="GI:325292332" /db_xref="GeneID:10266651" /translation="MHVYRGPRPATRKFANLELRGIAGDGTFSGYASVFGEVDLGRDV IERGAFRRSIEERGAGGIRMLYQHDPAEPIGAWRTIREDERGLYVEGVLAPGVARSRE VHSLMKTGALDGLSIGFRTVRSSKEGRSGKPARSGVRRILEADLWEISVVTFPMLPSA RVSDVKHARFFRDRETELVRTMRRAARSLFDTAFKR" misc_feature 893888..894445 /gene="gp35" /locus_tag="AGROH133_04845" /note="Caudovirus prohead protease; Region: Peptidase_U35; cl01521" /db_xref="CDD:163987" gene 894366..895772 /gene="gp36" /locus_tag="AGROH133_04846" /db_xref="GeneID:10266652" CDS 894366..895772 /gene="gp36" /locus_tag="AGROH133_04846" /note="Phage major capsid protein, HK97; Predicted phage phi-C31 gp36 major capsid-like protein" /codon_start=1 /transl_table=11 /product="phage phi-C31 major capsid gp36-like protein" /protein_id="YP_004278197.1" /db_xref="GI:325292333" /db_xref="GeneID:10266652" /translation="MSNTPASSATAKPSWCAPCAARRVRFSTQPSNADFLPNTSENKD GDMTDQMTKPAAMTVAPQVKAVPDTMTAAFDEFMEAFEAFRDTNDQRLSDIERKMGSD VVTRDKLDRIDKALDDNRKIMDDLALKKARPALGRKQAHSLDTDEHKAAFEAYIRRGE EGALRDLEAKAFAGSTGADGGYLLPTETDGEIGRRMTAISPIRSLATVRQVSTAVLKK PFSPGGFATGWVSETAARPETTTPKLSELSFPTMELYAMPAATQGLLDDAAVDIEAWI ASEVDIAFAEQEAAAFIAGDGTNKPKGFLSYTAVANDSWSWGNIGYVATGVAGGFASA GPMDVLLDAVYGLKAGHRQNGNFVMNRKTQGALRRFKDTSGAYLWHPPAAAGQPASLM GFPVMEAEDMPNVAANSFAIAFGDFRAGYLVVDRTGVRILRDPYSAKPYVLFYTTKRV GGGVQNFEAIKLVKFGVN" misc_feature 894504..895769 /gene="gp36" /locus_tag="AGROH133_04846" /note="Predicted phage phi-C31 gp36 major capsid-like protein [General function prediction only]; Region: COG4653" /db_xref="CDD:34272" misc_feature 894903..895760 /gene="gp36" /locus_tag="AGROH133_04846" /note="Phage capsid family; Region: Phage_capsid; pfam05065" /db_xref="CDD:147312" gene 895885..896454 /locus_tag="AGROH133_04847" /db_xref="GeneID:10266653" CDS 895885..896454 /locus_tag="AGROH133_04847" /note="Phage conserved hypothetical protein, phiE125 gp8" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278198.1" /db_xref="GI:325292334" /db_xref="GeneID:10266653" /translation="MTYALIHPPQAEPLTLAEVKAHLRLDGGDEDALLAALIRTAREH LERTTGLCLIRQTWRLYLDRWPPSGMILIGKGPVQTIETILVFDGQGRAADITAADRL LDGEARPARLWLRDPPAPGRVMNGIEIDFIAGYGEAGTDVPDTLKRAMLMHVAQMFAF RGAVALENQPAAVPAGYERLVSPFCRVGL" misc_feature 895927..>896058 /locus_tag="AGROH133_04847" /note="Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; Region: gp6; cd08054" /db_xref="CDD:153446" misc_feature <896287..896436 /locus_tag="AGROH133_04847" /note="Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; Region: gp6; cd08054" /db_xref="CDD:153446" misc_feature order(896311..896319,896326..896328,896335..896343, 896347..896355,896359..896367,896398..896415, 896419..896424,896431..896436) /locus_tag="AGROH133_04847" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153446" gene 896458..896793 /locus_tag="AGROH133_04848" /db_xref="GeneID:10266654" CDS 896458..896793 /locus_tag="AGROH133_04848" /note="gp16_SPP1: phage head-tail adaptor, ; Bacteriophage head-tail adaptor" /codon_start=1 /transl_table=11 /product="phage head-tail adaptor" /protein_id="YP_004278199.1" /db_xref="GI:325292335" /db_xref="GeneID:10266654" /translation="MNLVFLDPGKLTARLELEVRSEVTDGQGGAAESWSFLRSLWAAI EPVSNASHERASAEGVTITHRVWLVWRSDIVAGMRFRKGRRILAIRAVMDPDETRRFI VCRCEEESP" misc_feature 896467..896787 /locus_tag="AGROH133_04848" /note="Phage head-tail joining protein; Region: Phage_H_T_join; cl11461" /db_xref="CDD:196243" gene 896790..897185 /locus_tag="AGROH133_04849" /db_xref="GeneID:10266655" CDS 896790..897185 /locus_tag="AGROH133_04849" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278200.1" /db_xref="GI:325292336" /db_xref="GeneID:10266655" /translation="MSAADVLLQAIFARLSGDAALMELIPGGIVDRLLPRAILPLIVI SELESRDYSTATEKAEEHFLSLDIWSDANGRRCPGEIAGRVKTLLDDAALTLVGISLV NLQLLSSRSRREPKTRNFLAEMRFRAVTE" gene complement(897193..898392) /locus_tag="AGROH133_04850" /db_xref="GeneID:10266656" CDS complement(897193..898392) /locus_tag="AGROH133_04850" /note="Major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004278201.1" /db_xref="GI:325292337" /db_xref="GeneID:10266656" /translation="MSDATPFTSRARLIGVLAVGQVVSWGTGFDMLAILGPRIGQELA IANEVVFAGLTVMMTISALCGPLLGRTLVRRGAAPVLVAGSLLFTAGFVVLAFAGGVI SYVLGWIVMGLAATCGLTTAAHTAVVERVGAESGRSLTLLMVFTGLSAAVFLPVTTVA DQHLGWRGTLLVYACLQIFVLLPLYVFVLPGRRTSNTQGTSKGAAVSTSPVDTRRAFL LLAAMTTLSAFTAFGFSPLLPLLLVHAGASQSLAVQLAAVRSVLAIMARGLDFLLGKH GNPFVTCMIGLGMLLASFVLLLVFAPAMPAFIGFIIFFGFGAGVLTVSRAVLPLAVFS PEQYGLQAARISLPQNLAIAVAPVIFTLALDRGGVAAMLTIAAVLISISFLLLIVLWR TVRKQNS" misc_feature complement(<897865..898317) /locus_tag="AGROH133_04850" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(897943..897945,897961..897966, 897973..897978,898012..898014,898021..898026, 898033..898038,898045..898050,898186..898191, 898195..898200,898210..898212,898219..898224, 898231..898233,898282..898287,898291..898299, 898306..898308)) /locus_tag="AGROH133_04850" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 898422..898907 /locus_tag="AGROH133_04861" /db_xref="GeneID:10266657" CDS 898422..898907 /locus_tag="AGROH133_04861" /note="Phage major tail protein, TP901-1; Predicted secreted protein" /codon_start=1 /transl_table=11 /product="Phage major tail protein" /protein_id="YP_004278202.1" /db_xref="GI:325292338" /db_xref="GeneID:10266657" /translation="MLLVAGQLRPGNIKRDDINRNERETTMVAQKGKDLLLKFNNAGS YVTVAGLRTKRLAFNAQAVDITDGESAGRWRELLAGAGVQRASLTASGIFKDQASDAL VRGAFFAGSIPGWQIVIPDFGTITGPFQIVALEYSGRHDGEVQFETALESAGFLNFGA L" misc_feature 898500..898904 /locus_tag="AGROH133_04861" /note="Phage major tail protein 2; Region: Phage_tail_2; cl11463" /db_xref="CDD:196245" gene 898907..899263 /locus_tag="AGROH133_04862" /db_xref="GeneID:10266658" CDS 898907..899263 /locus_tag="AGROH133_04862" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278203.1" /db_xref="GI:325292339" /db_xref="GeneID:10266658" /translation="MPQGLRYGRANRHRGEIEALIDGERRVLCLTLGALAELETAFQA DDLTALAERFAAGRMKATDMIRVIGAGLRGAGNVFSDEDVAAATVEGGLAGHAAIVAD LLTATFAGSRGTPPDP" misc_feature 898943..899239 /locus_tag="AGROH133_04862" /note="Protein of unknown function (DUF3356); Region: DUF3356; pfam11836" /db_xref="CDD:152272" gene 899260..899481 /locus_tag="AGROH133_04863" /db_xref="GeneID:10266659" CDS 899260..899481 /locus_tag="AGROH133_04863" /note="Conserved hypothetical protein CHP02216, phage" /codon_start=1 /transl_table=11 /product="phage conserved hypothetical protein" /protein_id="YP_004278204.1" /db_xref="GI:325292340" /db_xref="GeneID:10266659" /translation="MSAAAGEVGDLTPRPFPWEAVIHTGFHLLRLSSETFWRLTPREF FAMTGGIRPAFHTLDRPAMDAMMRRFPDG" misc_feature 899302..899475 /locus_tag="AGROH133_04863" /note="Conserved hypothetical phage protein (DUF2376); Region: DUF2376; cl09774" /db_xref="CDD:195908" gene 899579..900160 /locus_tag="AGROH133_04864" /db_xref="GeneID:10266660" CDS 899579..900160 /locus_tag="AGROH133_04864" /codon_start=1 /transl_table=11 /product="Phage-related minor tail protein" /protein_id="YP_004278205.1" /db_xref="GI:325292341" /db_xref="GeneID:10266660" /translation="MAGEVSIANSREEAEALSEVMGDLERRSERFGAALTSAMQAAVT GGKGLDDVLRGLGERLSGIALSAGLKPLENMIGNAVGGLLNGGGSLFAFADGGVPGRS ITPFADGGVVASPAFFPMGGGLGLMGEAGAEAILPLKRGSDGALGVAAPAGGGGAQIV FNVTETDAASFRKSEGQIAAMLARSVGRGQRGL" misc_feature <899579..900157 /locus_tag="AGROH133_04864" /note="Phage-related minor tail protein [Function unknown]; Region: COG5281" /db_xref="CDD:34878" gene 900251..900889 /locus_tag="AGROH133_04865" /db_xref="GeneID:10266661" CDS 900251..900889 /locus_tag="AGROH133_04865" /note="Conserved hypothetical protein CHP02217; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278206.1" /db_xref="GI:325292342" /db_xref="GeneID:10266661" /translation="MAAFHEVRFPLRLALGVSGGPVRRTDIVNLSNGRENRNQRWKNA RRAYDAGSGIRSVADLYEVLSFFEARRGELHGFRFRDPVDFKSCPPGQTPAASDQKIG TGDGTTTAFQLVKTYADAGGSFTRRVEKPVEASVIISVDGVKAVLSDFSVDHATGTVT FRAGKAPPAGAAIRAGFEFDVPVRFAIDRIDVNLTAFEAGRIPSIPLMEILP" misc_feature 900257..900886 /locus_tag="AGROH133_04865" /note="Conserved hypothetical protein 2217 (DUF2460); Region: DUF2460; cl02268" /db_xref="CDD:164016" gene 900886..901770 /locus_tag="AGROH133_04866" /db_xref="GeneID:10266662" CDS 900886..901770 /locus_tag="AGROH133_04866" /note="Phage conserved hypothetical protein BR0599; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278207.1" /db_xref="GI:325292343" /db_xref="GeneID:10266662" /translation="MKTIPAAFAEHLAGEATTTCHCWKVTLKDGEVIGFTDHDGTLSF AGTAYLAASGFGASDSDSEAGLGASAGEVTGGFASEAISESDLAAGRFDGAQVALYLV NWQAPEQHVLLNMREIGEVTRAGGAFRAELRSIAHRLSQPQGRVYGRRCDAALGDRRC GVDLKRFTGTGSVAGMDAAGNLLVTGLDAFADGFFSRGKLRFLSGQLVGKGFDLDGHE KRDGGTLLSFWLAPEQPPQPGDVFSVIAGCDKSFATCKAKFANYLNFRGFPHLPGADF AYSYASGGQTHDGGALFP" misc_feature 900886..901374 /locus_tag="AGROH133_04866" /note="Uncharacterized conserved protein (DUF2163); Region: DUF2163; pfam09931" /db_xref="CDD:150587" misc_feature 900952..901761 /locus_tag="AGROH133_04866" /note="phage conserved hypothetical protein BR0599; Region: phg_TIGR02218" /db_xref="CDD:162767" misc_feature 901459..901710 /locus_tag="AGROH133_04866" /note="Phage conserved hypothetical protein BR0599; Region: Phage_BR0599; pfam09356" /db_xref="CDD:150132" gene 901767..902201 /locus_tag="AGROH133_04867" /db_xref="GeneID:10266663" CDS 901767..902201 /locus_tag="AGROH133_04867" /note="phage cell wall peptidase, NlpC/P60; Cell wall-associated hydrolases (invasion- associated proteins)" /codon_start=1 /transl_table=11 /product="NlpC/P60 family phage cell wall peptidase" /protein_id="YP_004278208.1" /db_xref="GI:325292344" /db_xref="GeneID:10266663" /translation="MSSTSEKVLALAQGWIGTPYRHQASLQGVGCDCLGLVRGIWRSL YGEEPELPPPYAPDWAERGGEDRLLDAATRYFSAVPDMEEAMPGDLLLFRWRADAAAK HLGILAGPQHFIHAYEQAAVVRSALVPGWKRRIAGVFRFPEP" misc_feature 901788..902192 /locus_tag="AGROH133_04867" /note="NlpC/P60 family; Region: NLPC_P60; cl11438" /db_xref="CDD:196233" gene 902219..906022 /locus_tag="AGROH133_04868" /db_xref="GeneID:10266664" CDS 902219..906022 /locus_tag="AGROH133_04868" /note="Acyl carrier protein-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278209.1" /db_xref="GI:325292345" /db_xref="GeneID:10266664" /translation="MATILFQAAGAALGGFFGPVGAIIGRAAGALAGNAVDRALLSNG RTVSGARLSTARIPGADEGAAINRLYGTARIGGTLIWATRFEESVEVTRRGGKSNRGP KVETFRYFANLAVGLCEGEAAMVRRVWADGRELDLSAIEMRFYPGSETQLPDPLIEAK QAAGNAPAFRGLAYVVFERLPLDSYGNRIPLMQFEVVRPVGRLEKAIRAITVIPGATE HGYATAQVSERTGMGESRIMNRNCLTALTDWQAAIDELQALCPNLQSVALVVSWFGTD MRAGECRILPGVEVAGRDRESAAWSVAGVSRGQAHLVSHHGGGPAYGGTPDDQSVVQA IADLKARGLKVCLYPFVMMDVPAGNGLPDPYGKGEQDAYGWRGRITCFPAPGLAGSPD RSAGTRTEISTLCNRTEGYRRMVLHYAALVAQAGGVDAFLIGSELRGLTSLRDHNDAF PFVEELVRLAADVRAVVGSATKLTYGADWSEYFGYQPADGSGDVFFNLDPLWASPDID AIGIDNYMPLSDWRDEDATNGNPDGMSGPDDASAFRYAITAGEGFDWYYASDADRAAR RRKPITDGLRGKPWVFRYKDLRSWWQNAHVDRVRGAEKLTPTAWVPGSKPIWFTELGC PAVDKSATRPNVFPDPKSAENAYPYFSHRSRADSQQRRFLEAHLDHWRGKGDAAMVDH NRVYMWTWDARPFPAFPQNGAAWSDGANWRTGHWLNGRLGTATLADTIAAILTDHGFS GFDVSAVSGDLTGYAQGDVTSARNLLEPLMAAFQVDVAEDGGTLRFRSRNTAVLPVRD AAVLADLDDEPLWSENRGHDSDFAAEAVLTSFNPALDYEQASVRSRRIDNAGSRVMRL DLSAALPAEKAEAAAEALLRDNRQARRTLRFALPPGDIALEPGDCIRLPQNVFSEAPA GRFLVSRIEDGTVRQVEARAFSVASAAFSGAVDERRVGGAKGAEGFAPEVLFLDLPRH DGTASENSARIAVFARPWRPIVVSSSAGTEGYRQRAVLDRPAMIGTLAMPLTSGPSGR FDRQNTILIDLPSGELSSATELSVLNGENRMAVRAANGVWEIIAFARAEEIAPARWRL SALLRGLGGTEDALAIGAPVGAPVVVLDAAVQPLGLAATERGRRLNWIAEAAGMAGAP AGPFVFEGGLRAETPLAPVHLAAERRRDGILLRWVRRGRMEADGWDASEIPLEEPFER YRVEVLDREAVRRTAEVSEPFWLYPKADELTDFPTLRDHISVRVRQLGRAVPLGVAAH AVLPL" gene 906030..906263 /locus_tag="AGROH133_04869" /db_xref="GeneID:10266665" CDS 906030..906263 /locus_tag="AGROH133_04869" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278210.1" /db_xref="GI:325292346" /db_xref="GeneID:10266665" /translation="MKNNAKDEIMESTKAWYQSRTIWGALVAVFAPLFSVAGLDLPAG LHGELAEGLVTVAGGIGGLVALYGRLSATRAIR" gene 906196..906657 /locus_tag="AGROH133_04872" /db_xref="GeneID:10266666" CDS 906196..906657 /locus_tag="AGROH133_04872" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278211.1" /db_xref="GI:325292347" /db_xref="GeneID:10266666" /translation="MRAELAASSHFTAAFRQPVPSADATCAHTVPAVRRGVGGGIHLP FRRFALHIRSQYGSRRSRFFWKICAMASPLIIATLAAGLSGFTAPEADLQGHYILAAS DCGAAVARVVRETGGQLLSVYPSGDGQSCVVTVLVQGNGERPRKVTMRVPM" gene 906754..907425 /locus_tag="AGROH133_04874" /db_xref="GeneID:10266667" CDS 906754..907425 /locus_tag="AGROH133_04874" /note="Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004278212.1" /db_xref="GI:325292348" /db_xref="GeneID:10266667" /translation="MRILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEP YDAIVLDIGLPQMDGITVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKP FHVEEVLARVRALIRRAAGHASSELVCGPVKLDTKSSKATVNGVTLKLTSHEFRLLSY LMHHMGEVVSRTELVEHMYDQDFDRDSNTIEVFVGRLRKKLGVDLIETIRGLGYRMQA PADAK" misc_feature 906754..907413 /locus_tag="AGROH133_04874" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 906763..907074 /locus_tag="AGROH133_04874" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(906772..906777,906904..906906,906928..906930, 906988..906990,907045..907047,907054..907059) /locus_tag="AGROH133_04874" /note="active site" /db_xref="CDD:29071" misc_feature 906904..906906 /locus_tag="AGROH133_04874" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(906913..906918,906922..906930) /locus_tag="AGROH133_04874" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 907054..907062 /locus_tag="AGROH133_04874" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 907132..907401 /locus_tag="AGROH133_04874" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(907204..907206,907261..907266,907318..907320, 907327..907329,907351..907356,907375..907377, 907390..907392) /locus_tag="AGROH133_04874" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 907415..908815 /locus_tag="AGROH133_04875" /db_xref="GeneID:10266668" CDS 907415..908815 /locus_tag="AGROH133_04875" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004278213.1" /db_xref="GI:325292349" /db_xref="GeneID:10266668" /translation="MRSSSLTARVLLLASAWSALALVVIAVVISTLYRQGVERSFTDL LRAQLYNVINSVTISNENTLAGSPQLGDLRFSQPDTGWYWVVEPLGNFQTAPLVSSSL GVASLPVPSIIDAPFDNRYERFYAVTDEAGNKVRVAETEVVLDGEGRAARFRVSGNLN VVEDDVRNFSNSLYLALAVFGVGSLVVNGLAILYSLRPLDQARLALGKIRGGEAESLE GEFPREIQPLANEVNALIDSNRRIVERARMQVGNLAHSLKTPIAVLLNEARTLEPQHG DLVRAQADAMQAQVQSYLSRARIAAQRGSILARVEAEPALERLVRVMRRLNPDKQFEL NFEHPGAVLGMEQQDLEEIVGNLLENAARFAQTKVVVTLATGTHPSSDPEMGRRSWVE LIVEDDGPGLEPGQISEAMKRGRRLDESRPGTGLGLSIVSEVVSEYHGHFSLSRSGIG GLKADLILPGLSKELA" misc_feature <907982..908785 /locus_tag="AGROH133_04875" /note="sensor protein PhoQ; Provisional; Region: PRK10815" /db_xref="CDD:182754" misc_feature 908462..908788 /locus_tag="AGROH133_04875" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(908480..908482,908492..908494,908501..908503, 908597..908599,908603..908605,908609..908611, 908615..908620,908687..908698,908744..908746, 908750..908752,908765..908770,908774..908776) /locus_tag="AGROH133_04875" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 908492..908494 /locus_tag="AGROH133_04875" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(908609..908611,908615..908617,908687..908689, 908693..908695) /locus_tag="AGROH133_04875" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 908896..909351 /gene="lipA" /locus_tag="AGROH133_04879" /db_xref="GeneID:10266669" CDS 908896..909351 /gene="lipA" /locus_tag="AGROH133_04879" /note="Surface antigen" /codon_start=1 /transl_table=11 /product="lipA protein" /protein_id="YP_004278214.1" /db_xref="GI:325292350" /db_xref="GeneID:10266669" /translation="MYDGCRSVTMRSLVSRPALLSILCVSMLSACTTTGTRSAGGSLF GGSAQPSTPFLANMQGGIVGRSGLQLEKGDRTKALEAEYRALETAPVGTPVTWTGDDA SGQVVANAPYQVGNQNCRQYSHTLTVDEKETRVRGAACRNADGSWSPLT" misc_feature 908971..909348 /gene="lipA" /locus_tag="AGROH133_04879" /note="Surface antigen [Cell envelope biogenesis, outer membrane]; Region: LipA; COG4520" /db_xref="CDD:34175" gene 909495..910649 /gene="cycH" /locus_tag="AGROH133_04881" /db_xref="GeneID:10266670" CDS 909495..910649 /gene="cycH" /locus_tag="AGROH133_04881" /note="Tetratricopeptide-like helical; Cytochrome c biogenesis factor" /codon_start=1 /transl_table=11 /product="cycH protein" /protein_id="YP_004278215.1" /db_xref="GI:325292351" /db_xref="GeneID:10266670" /translation="MFWIVVAILTAAVAIVLMYPLMRKTEVSQTRRDGEVAVYRDQLA ELDRERAAGMIGETEAEYARAEIGRRLLAAADTRQDAESSARPLRHNLAVTLITVLLP ALGLCLYIWKGSPEVPDMPLEARLEQPGNDMNLLVARAERHLAENPDDGAGWDILAPI YFKTMRLGDAELAYRNALRLQGPSTERLTGLGETLVASNDGIVIEAAREAFAEAERLK PGNPRARFYLALSLEQAGKAQEARAAFAALAADAPAGAPWLPLVREHIARTGGEAAPG PTAGDVAAAKDMTPADRQAMIEGMVASLDAKLKENPGDFEGWMRLVRAYSVLNNAAKA GEALRAGLQVFPPEGEEGKQLLALAKELGVSAGPVRMDGQGRAMPQGVTQ" misc_feature 909495..910292 /gene="cycH" /locus_tag="AGROH133_04881" /note="Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]; Region: COG4235" /db_xref="CDD:33959" misc_feature 909495..909839 /gene="cycH" /locus_tag="AGROH133_04881" /note="cytochrome c-type biogenesis protein CcmI; Region: cytochro_ccmI; TIGR03142" /db_xref="CDD:163153" misc_feature <910341..>910628 /gene="cycH" /locus_tag="AGROH133_04881" /note="Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]; Region: COG4235" /db_xref="CDD:33959" gene 910646..911158 /gene="cycJ" /locus_tag="AGROH133_04884" /db_xref="GeneID:10266671" CDS 910646..911158 /gene="cycJ" /locus_tag="AGROH133_04884" /note="CcmE/CycJ protein" /codon_start=1 /transl_table=11 /product="Cytochrome c-type biogenesis protein CcmE" /protein_id="YP_004278216.1" /db_xref="GI:325292352" /db_xref="GeneID:10266671" /translation="MTRKQKRLAIIGGGMSFIVAAVLLVMFAFGQSIAYFYMPADLEK TPVNPGTRIRLGGLVAEGSVKRGEGRTVSFTVTDGEANVPVSYTGILPDLFREGQGVV TEGVFDAATHGFVADSVLAKHDENYMPKEVADRLKDKGLWQNTGEGGQPSGAAPSPAG ASADKTGAIK" misc_feature 910646..911074 /gene="cycJ" /locus_tag="AGROH133_04884" /note="CcmE; Region: CcmE; cl00994" /db_xref="CDD:186292" gene 911155..913149 /gene="cycK" /locus_tag="AGROH133_04887" /db_xref="GeneID:10266672" CDS 911155..913149 /gene="cycK" /locus_tag="AGROH133_04887" /note="Cytochrome c-type biogenesis protein CcmF; Cytochrome c biogenesis factor" /codon_start=1 /transl_table=11 /product="cytochrome c-type synthesis protein" /protein_id="YP_004278217.1" /db_xref="GI:325292353" /db_xref="GeneID:10266672" /translation="MINEIGHYVLVLALAVGLIVSTLPVIGARRNDRALMDIASLGSV VMFLLVALSFAALTRAYAVSDFSVRNVWENSHSLMPMLYKLTGVWGNHEGSMLLWLLI LVFFSALVAVFGRNLPETLKANVLSVQAWISVAFLLFILLTSNPFMRLERVPAEGQDL NPILQDFGLAIHPPLLYLGYVGFSVCFSFAVAALLEGRIDAAWARWVRPWTLAAWTFL TAGISMGSYWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSALVMEKRETLKIWTV LLAIMTFSLSLLGTFLVRSGVLTSVHAFATDPSRGIFILGILTVFIGGAFALFAWRAP SLKVGGLFAPISREGALVLNNLILTVSTATVLIGTLYPLILETLTGEKISVGAPFFNL TFGLLMIPVLIVTPFGPMLAWKRGDLLGAFQRLYVAAAIAALAGLTLWYVENGGPVLA ALGIAAGFWLIFGALADLWYRANFGKLAFGIAFRRLKGLPRSAFGAALAHMGLGITVL GIVTVTTFETETVLEMKQGMEAKAGGYSLTFDGIRHAVGPNFTEDRGHFTIRKAGVEV ADVWSSKRLYTARRMPTTEAGILTFGLSQLYVSLGDPMADGGMVVRIWWKPFILCIWG GTLFMMAGGLISLSDRRLRVGAPSRKAKPAKTAAMPEAAE" misc_feature 911155..913104 /gene="cycK" /locus_tag="AGROH133_04887" /note="Cytochrome C assembly protein; Region: Cytochrom_C_asm; cl00504" /db_xref="CDD:186041" gene 913146..913610 /gene="cycL" /locus_tag="AGROH133_04903" /db_xref="GeneID:10266673" CDS 913146..913610 /gene="cycL" /locus_tag="AGROH133_04903" /note="Cytochrome C biogenesis protein; Uncharacterized protein involved in biosynthesis of c-type cytochromes" /codon_start=1 /transl_table=11 /product="cycL protein" /protein_id="YP_004278218.1" /db_xref="GI:325292354" /db_xref="GeneID:10266673" /translation="MREVVAGLTLLLVLMFTSWPAFAFNPDEVLKDPALEQRARNLTS QLRCMVCQNQSIDDSNAELARDLRVLVRDRLVAGDSDQAVVDYVVSRYGEFVLLKPRF NMRTALLWGAPIVLALAGIFAILVFSRRRATQERPEKLSADEEERIRNLIEK" misc_feature 913173..913604 /gene="cycL" /locus_tag="AGROH133_04903" /note="Cytochrome C biogenesis protein; Region: CcmH; cl01179" /db_xref="CDD:194063" gene 913767..915320 /gene="dop" /locus_tag="AGROH133_04907" /db_xref="GeneID:10266674" CDS 913767..915320 /gene="dop" /locus_tag="AGROH133_04907" /EC_number="3.4.21.-" /note="Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain" /codon_start=1 /transl_table=11 /product="serine protease DO-like protease" /protein_id="YP_004278219.1" /db_xref="GI:325292355" /db_xref="GeneID:10266674" /translation="MSHSQNGRSSLKTVLKATTVGGLAALMLSTGIAAPIVHSFAAPV EVTAPQVPSFANVVEAVSPAVVSVRVQSNVQPASDDSSNFSFNFGGRGLDQLPDDHPL KRFFKEFGGPNQDRPDRGPNRHRDGKGPLRPVAQGSGFFISEDGYVVTNNHVVDDGSA YTVVMNDGTELEAKLVGRDPRTDLALLKVDVNRKFTYVQFADDSKIRVGDWVVAVGNP FGLGGTVTSGIVSARGRDIGSGPYDDYLQIDAAVNRGNSGGPAFNLNGEVVGINTAIF SPSGGNVGIAFAIPSSVAKDVIADLQKDGKVERGWLGVQIQPVSKDIAESLGLAEAKG ALVVSPQSGSPGDKAGIKQGDIITAVNGDPVKDARDLSRRIGSMTPNSKVEISLWRGG KSQSVTVTLGDLASDDASKATPGQENDSGSKPSSAKVLSSLGLTVAPADDGNGLAITD VDPDSDAAARGLKTGEKITSVNNQQVASAADIEKVLEQAKKDGRSKALFQIQTDSGSR FIALDIDQG" misc_feature 914037..915302 /gene="dop" /locus_tag="AGROH133_04907" /note="periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037" /db_xref="CDD:162670" misc_feature 914181..914660 /gene="dop" /locus_tag="AGROH133_04907" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" misc_feature 914694..914963 /gene="dop" /locus_tag="AGROH133_04907" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature order(914697..914708,914712..914714,914865..914870, 914877..914882) /gene="dop" /locus_tag="AGROH133_04907" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" misc_feature 915081..915302 /gene="dop" /locus_tag="AGROH133_04907" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" gene 915592..916350 /gene="ragA" /locus_tag="AGROH133_04910" /db_xref="GeneID:10266675" CDS 915592..916350 /gene="ragA" /locus_tag="AGROH133_04910" /note="Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004278220.1" /db_xref="GI:325292356" /db_xref="GeneID:10266675" /translation="MENKVQEMSVASVSGCAEKGEGAIVPHMKILVIEDDLEAAAYMT KAFREVGIVADHASDGESGLFMGCENSYDVMVIDRMLPRRDGLSVISELRRRGIETPV LILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKGKPEQDMVYRVGDL ELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDPQTNVI DVHVSRLRSKIEKDFEKPLLKTIRGAGYMMKDEG" misc_feature 915679..916335 /gene="ragA" /locus_tag="AGROH133_04910" /note="heavy metal response regulator; Region: cztR_silR_copR; TIGR01387" /db_xref="CDD:130454" misc_feature 915682..916017 /gene="ragA" /locus_tag="AGROH133_04910" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(915691..915696,915823..915825,915847..915849, 915907..915909,915964..915966,915973..915978) /gene="ragA" /locus_tag="AGROH133_04910" /note="active site" /db_xref="CDD:29071" misc_feature 915823..915825 /gene="ragA" /locus_tag="AGROH133_04910" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(915832..915837,915841..915849) /gene="ragA" /locus_tag="AGROH133_04910" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 915973..915981 /gene="ragA" /locus_tag="AGROH133_04910" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 916054..916335 /gene="ragA" /locus_tag="AGROH133_04910" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(916126..916128,916183..916188,916240..916242, 916249..916251,916273..916278,916309..916311, 916324..916326) /gene="ragA" /locus_tag="AGROH133_04910" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 916351..917769 /gene="ragB" /locus_tag="AGROH133_04911" /db_xref="GeneID:10266676" CDS 916351..917769 /gene="ragB" /locus_tag="AGROH133_04911" /EC_number="2.7.3.-" /note="two component sensor kinase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor histidine kinase" /protein_id="YP_004278221.1" /db_xref="GI:325292357" /db_xref="GeneID:10266676" /translation="MAKMVRLRILFRSTAVRLSALYILLFALCAAFLVFYVTALSERL LNQQTRDAVLQEVSDVQRIYNRGGINPLLRMMERRARQPGASLYIIAGPNGEILAGNV ASVQPGVFDKEGWTGFPFRYERYSESGDSVQHMATANVFMLDNGLRILIGRDLGEPTK FRALVRNALMVALAIMSAGALLIWFGIGRNALKRIDRMSAATKKIMAGDLSQRLPQGR SGDEFDRLSGSLNAMLGRIEKLNEGLRQVSDNIAHDLKTPLTRLRNKAAAALDDNDET KRRAALEGIIAESDQLIRTFNALLMISRVEAGSIAAEMTDVDMSAIAADSAELYEPVA EDAGLTLEAEIEPGLSVQGNRELIGQALSNLIDNAMKYACECEGDKKLIVRLVSEPDA IVLSVSDNGPGIPADKRGEVLKRFVRLDESRSKPGTGLGLSLVEAVMELHGGSLALSD TDTTNSVCPGLTVSMIFPVSTQ" misc_feature 916768..917760 /gene="ragB" /locus_tag="AGROH133_04911" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature 916855..917067 /gene="ragB" /locus_tag="AGROH133_04911" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 917071..917262 /gene="ragB" /locus_tag="AGROH133_04911" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(917089..917091,917101..917103,917113..917115, 917122..917124,917134..917136,917143..917145, 917191..917193,917203..917205,917212..917214, 917224..917226,917233..917235,917245..917247) /gene="ragB" /locus_tag="AGROH133_04911" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 917107..917109 /gene="ragB" /locus_tag="AGROH133_04911" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 917422..917688 /gene="ragB" /locus_tag="AGROH133_04911" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(917440..917442,917452..917454,917461..917463, 917539..917541,917545..917547,917551..917553, 917557..917562,917635..917646) /gene="ragB" /locus_tag="AGROH133_04911" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 917452..917454 /gene="ragB" /locus_tag="AGROH133_04911" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(917551..917553,917557..917559,917635..917637, 917641..917643) /gene="ragB" /locus_tag="AGROH133_04911" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 917961..918386 /locus_tag="AGROH133_04915" /db_xref="GeneID:10266677" CDS 917961..918386 /locus_tag="AGROH133_04915" /note="thiol-disulphide oxidoreductase DCC, Protein of unknown function, DUF393; Predicted thiol-disulfide oxidoreductase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278222.1" /db_xref="GI:325292358" /db_xref="GeneID:10266677" /translation="MANMAPLVGDHHGPIILFDAECVLCSVNAQFVLRHDKAGYFRLA SMQGAVGTEIYRRHGMDPKNPVSLLVVDGDRVRQDSDGVLAIYEALGIPWRLLGMLRI IPAFLRDPVYRFVARNRYRWFGKRAQCWVAPPEYRDRIL" misc_feature 918000..918383 /locus_tag="AGROH133_04915" /note="Protein of unknown function, DUF393; Region: DUF393; cl01136" /db_xref="CDD:194048" gene complement(918500..919447) /locus_tag="AGROH133_04916" /db_xref="GeneID:10266678" CDS complement(918500..919447) /locus_tag="AGROH133_04916" /note="MltA-interacting protein MipA; Outer membrane protein V" /codon_start=1 /transl_table=11 /product="outer membrane protein" /protein_id="YP_004278223.1" /db_xref="GI:325292359" /db_xref="GeneID:10266678" /translation="MSPQLCPRSVLLNETRLPGFATLDAATDMIMKQIFTVKWQKNLR AMALCLTALPLAQAVCTPVLAADLGKSDRFAEPQGNFDNARYSSSSEWKITLGVGAAY APKYEGSDKLEAGAVPLVSVEYGDTLSIDFSGVTVNLLNSNGFRLGVKGGWEAGRKEK DDKKNLRGMGDIKAGGVVGGVIAYGIDPFEVYAKVDKTISGSEGLTATVGASVSHKVD QFILDADLSATWADDKHMKSYFGVTSAQSAPSGLRRYDAKAGFKRIDASASLTYLMTE NWSITGAGGVGFLLGDAKDSPLSKKDIQPFAMIGVAYTF" misc_feature complement(918503..919264) /locus_tag="AGROH133_04916" /note="MltA-interacting protein MipA; Region: MipA; cl01504" /db_xref="CDD:154438" gene 919687..922656 /gene="glnE" /locus_tag="AGROH133_04917" /db_xref="GeneID:10266679" CDS 919687..922656 /gene="glnE" /locus_tag="AGROH133_04917" /EC_number="2.7.7.42" /note="Glutamine synthetase adenylyltransferase" /codon_start=1 /transl_table=11 /product="glutamate-ammonia-ligase adenylyltransferase" /protein_id="YP_004278224.1" /db_xref="GI:325292360" /db_xref="GeneID:10266679" /translation="MTKRETAERRLSEVLPGVIRPYTQTELKSVLSTLKDIAKGEPAV AALLAAESPLKDFIAAAFTLSPYLRDMAAADEGLLTLAISKPLEPLLADLVREARDCW RPGQEGGVPVENEVMSRLRIAKRRLSFVAALADLARIFTARDTTRWLSDMADASLSAA IDHLLLVGHETGKLKLKNVAAPSEGSGLIVLGMGKLGARELNYSSDIDAVVFFEPSAG IIDDPYAATENFGRMMRRLVRIMQERTADGYVFRTDLRLRPDPGSTPLAIPVEAALLY YEGRGQNWERAAYIKARPVAGDLKAGDNFLRELTPFIFRKYLDYAAIADIHSIKRQIH AHKGHGAIAVKGHNVKLGRGGIREIEFFAQTQQLIAGGRMPALRVRATQEALAALTEA KWIDAETRDSLTDAYWFLREVEHRIQMVRDEQTHVLPDTETELKRIAFMLGFEDTKAF SEKLEKVLRLVERRYSALFEQETKLSGEAGNLVFTGQKDDPDTLKTLSALGFQRPEDI SRVIRTWHNGRYRATQSVEARERLTELTPDLLRAFGESKRADEALLRFDNFLSGLPAG IQLFSLLGNNQALLSLLVTIMSSAPRLAEIIAARPHVFDGMLDPALMSDIPTREYLAQ RMGNFLSNARHYEDILDRLRIFAAEQRFLIGVRLLTGAIRGEIAARAFTHLADLVIEA ALNAVLSEMETAHGPYPGGRVAVMGMGKLGSFELTAGSDVDLILLYDYDDAAHESTGA KPLDVVRYFTRVTQRLIAALSAPTAEGVLYEVDMRLRPSGNKGPVATRISAFEKYQRE EAWTWEHMALSRARLICGEASLMEDARGIIASILSQKRDVAKVSADVLEMRSLIEQEK PPENIWDFKLINGGLIDLEFIAQYLALVGPAKGLQPHEPGRNTAEALQVLAAPVMEQQ SFDDCLAATALYTEISQIVRLCIDGAFNPKEAPAGLIDLVCRAGDCPDISTLEGEVKR LAKVVRKAFVATVKNGG" misc_feature 919687..922653 /gene="glnE" /locus_tag="AGROH133_04917" /note="bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional; Region: PRK14108" /db_xref="CDD:184512" misc_feature <920230..920622 /gene="glnE" /locus_tag="AGROH133_04917" /note="Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401" /db_xref="CDD:143391" misc_feature order(920302..920304,920308..920310,920446..920448) /gene="glnE" /locus_tag="AGROH133_04917" /note="metal binding triad; other site" /db_xref="CDD:143391" misc_feature 920665..921093 /gene="glnE" /locus_tag="AGROH133_04917" /note="GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335" /db_xref="CDD:149407" misc_feature 921646..922170 /gene="glnE" /locus_tag="AGROH133_04917" /note="Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401" /db_xref="CDD:143391" misc_feature order(921847..921849,921853..921855,922003..922005) /gene="glnE" /locus_tag="AGROH133_04917" /note="metal binding triad; other site" /db_xref="CDD:143391" gene complement(922719..925046) /locus_tag="AGROH133_04918" /db_xref="GeneID:10266680" CDS complement(922719..925046) /locus_tag="AGROH133_04918" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; FOG: PAS/PAC domain" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004278225.1" /db_xref="GI:325292361" /db_xref="GeneID:10266680" /translation="MRRATAGDERPYAKFSDLAAWGERLSSDLMGLMNGSDRPMPQVE TLLKRLIPILILAFLVVIAASRMLGIVAEYSRMEEAARHSTALTALTAKAALINNGIV FASQERARAEASLAAALPSGSLADGTMVLLSGSNGRIFAGAGKGATLYIGTSLPALLP EIAIVQRFPGAPGTIETNIDNQPHYATMIPFGDDGGMVIAARSLEPIRSFWRSEIAMN VTLFAGISSILLVVLYAYYMQVKRARDADDIFAESNLRVETALSRGRCGLWDFDLSTR RMFWSGSLYEILGRPPKAAPLSFSDAARMMHSEDGNLYELARAVGCGDLRQIDQIFRM RHAKGHYVWLRARAQVIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAIESTSE AFVLWDKNDRLVMCNTHYQKAYGLPDSVLVAGTEKSAVQAAAARPVVERRVADPDQSG LSRMTEVQLADDRWLQINERRTRDGGLVSVGTDITLLKRHQERLRDSERRLMATIGDL SASQHKLERQKTELSDANANYLAEKERAQAANLAKSEFLANMSHELRTPLNAILGFSD ILQNEMFGPVGSPKYSEYARDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAP LIEETLRLTAIQAEQKNITVQQKVCAGLTMQGDRRAMKQIMLNLLSNAVKFTGNGGRV ALRTHVHQAAMILTIADTGIGIPAEALDKIGQPFEQVQSQYAKSQGGSGLGLAISRSL VRLHGGTMKIRSCEGRGTVVTIIIPHAAGCCGTVH" misc_feature complement(923958..924218) /locus_tag="AGROH133_04918" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" misc_feature complement(923940..924062) /locus_tag="AGROH133_04918" /note="Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); Region: PAC; smart00086" /db_xref="CDD:128397" misc_feature complement(922752..>923936) /locus_tag="AGROH133_04918" /note="sensory histidine kinase AtoS; Provisional; Region: PRK11360" /db_xref="CDD:183098" misc_feature complement(923226..923429) /locus_tag="AGROH133_04918" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(923241..923243,923253..923255, 923262..923264,923274..923276,923283..923285, 923295..923297,923355..923357,923364..923366, 923376..923378,923385..923387,923397..923399, 923409..923411)) /locus_tag="AGROH133_04918" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(923391..923393) /locus_tag="AGROH133_04918" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(922755..923066) /locus_tag="AGROH133_04918" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(922767..922769,922773..922778, 922791..922793,922797..922799,922845..922856, 922935..922940,922944..922946,922950..922952, 922956..922958,923025..923027,923034..923036, 923046..923048)) /locus_tag="AGROH133_04918" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(923034..923036) /locus_tag="AGROH133_04918" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(922848..922850,922854..922856, 922938..922940,922944..922946)) /locus_tag="AGROH133_04918" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(925294..925719) /locus_tag="AGROH133_04921" /db_xref="GeneID:10266681" CDS complement(925294..925719) /locus_tag="AGROH133_04921" /note="Carboxymuconolactone decarboxylase family; Uncharacterized homolog of gamma- carboxymuconolactone decarboxylase subunit" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278226.1" /db_xref="GI:325292362" /db_xref="GeneID:10266681" /translation="MPVRRLDFRQGGATHCATQSSATGRNAAASGKGLQMTDISNTSN SFQRFITEAPAHQAVWLQAVQGLGAASTLDAKTQCLVYIGILAALRLEGGVAFHVLEA KAHGASRDDIISAVLTGLPAAGNGVLGALGPALEAFDKA" misc_feature complement(925300..>925584) /locus_tag="AGROH133_04921" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene complement(925758..928406) /gene="pepN" /locus_tag="AGROH133_04922" /db_xref="GeneID:10266682" CDS complement(925758..928406) /gene="pepN" /locus_tag="AGROH133_04922" /EC_number="3.4.11.2" /codon_start=1 /transl_table=11 /product="Aminopeptidase N" /protein_id="YP_004278227.1" /db_xref="GI:325292363" /db_xref="GeneID:10266682" /translation="MRTDTGQIVHLADYRPTDFVLERVDLTFELDPKNTKVEARLIFH RREGVDVSAPLVLDGDELTLSGLLLDQVDIPASQYDATPDSLTIRDLPAATPFEICVT NYINPQVNTQLMGLYRTNGVYCTQCEAEGFRRITYFPDRPDVLAPYTVTIIAAKEGNP LLLSNGNFLGGGNYDEGCHFAAWFDPHPKPSYLFALVAGDLGVVEDTFTTLSGREVAL KIYVEHGKEPRAAYAMDALKRSMKWDEERFGREYDLDIFMIVAVSDFNMGAMENKGLN VFNDKFVLADPETASDADYANIERIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRD QEFSADMRSRPVKRIADVRHLKSEQFPEDSGPLAHPPRPDTYREINNFYTTTVYEKGA EVTRMIATILGEDDFKKGMDLYFERHDGEAATVEDFVKSFADASGRDLSQFSLWYTEA GTPLVSVSSAYDAAKATFRLTLEQTVAPTPGQPVKQPRHIPLSLALILDNGQIAEPQA VTGGEYRDGVLHLTERNQTFSFSGISSRPVLSLNRSFSAPINLHFEQSAADLVQVARH ETDMFARFQALTDLALPALIAATRAVQNGQEVSSDADLIATLIEIVGDASLEPAFRAQ ALALPSETDIARELGGNTDPDAIHKARNATIKAIATAGIETLRGLADSDSNGEAYSPD ADSAGRRSLRNGALSFLAFAEGTPDRAAKAYASATNMTDLAHALGVLTQRFPDSAETK EALAAFEARFADNALVLDKWFSLQAAIPGDGALERIKALMTSKHFIASNPNRVRSLVG TLAFSNPTGFHRADGAAYRFLAEQIIAIDKRNPQLAARILTSMRSWRSLEASRAEHAK AALSTIAEAKGLSTDVSDIVGRILKG" misc_feature complement(925761..928406) /gene="pepN" /locus_tag="AGROH133_04922" /note="aminopeptidase N; Provisional; Region: pepN; PRK14015" /db_xref="CDD:184453" misc_feature complement(925767..928370) /gene="pepN" /locus_tag="AGROH133_04922" /note="Peptidase M1 family containing Aminopeptidase N; Region: M1_APN_1; cd09600" /db_xref="CDD:189007" misc_feature complement(order(925911..925913,927243..927245, 927258..927260,927267..927269,927426..927431, 927483..927485,927492..927497,927504..927509, 927594..927608,928020..928025,928029..928031)) /gene="pepN" /locus_tag="AGROH133_04922" /note="active site" /db_xref="CDD:189007" misc_feature complement(order(927426..927428,927483..927485, 927495..927497)) /gene="pepN" /locus_tag="AGROH133_04922" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:189007" gene 928900..929838 /locus_tag="AGROH133_04923" /db_xref="GeneID:10266683" CDS 928900..929838 /locus_tag="AGROH133_04923" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278228.1" /db_xref="GI:325292364" /db_xref="GeneID:10266683" /translation="MNAEPTNPFRGISLKLISVGFFLVMQTCIKASGPDVPAGQITFF RSAFAIIPIVVYLAWLHALTSALHTNNLIGHFKRGFLGILSMACGFYGLTLLPLPEFI AIGYASPLLAVVFAAFILREKVRIYRWSAVFVGMMGVLVILWPKMTLLREGGFAAGEG LGAIAVLCGAALGGLAMIQVRQLVETEKTPTIVLYFSLTATLLSLVSVPFGWSALDTK QAVLLITSGICGGVAQIFLTESYRHAEVSTIAPFEYSSIVFGIAVSYILFGDIPTLTM LIGTAIVIFAGIFIIFREHQLGLARRAARKASTPQG" misc_feature 928912..929730 /locus_tag="AGROH133_04923" /note="Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:31041" misc_feature 928978..929331 /locus_tag="AGROH133_04923" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene complement(930000..930191) /locus_tag="AGROH133_04934" /db_xref="GeneID:10266684" CDS complement(930000..930191) /locus_tag="AGROH133_04934" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278229.1" /db_xref="GI:325292365" /db_xref="GeneID:10266684" /translation="MTTRFRPVHSGFETLRLAGLGPRSSQGYHRFGAAANEQMTARAA MQQVRVTRPAAVFADFRER" gene complement(930345..931244) /locus_tag="AGROH133_04935" /db_xref="GeneID:10266685" CDS complement(930345..931244) /locus_tag="AGROH133_04935" /EC_number="2.7.7.7" /note="Phage SPO1 DNA polymerase-related protein; Uracil-DNA glycosylase" /codon_start=1 /transl_table=11 /product="DNA polymerase bacteriophage-type" /protein_id="YP_004278230.1" /db_xref="GI:325292366" /db_xref="GeneID:10266685" /translation="MIAAHDLSPAELAALLHFHADAGVDWLLEDGPVDRFAEFAASRP ARPAARQESSAPAHQMDSGTERRADAPQRQTAGRSAPTRGAPPAPALQQNVAMPDEQA VAAARFAAESARSLSELKIALEGFSGCNLKNSARNTVFTEGDPACAVMVIGPMPDADD DREGQLFAGKTGLLLDRMLAAIGLDRARIMLGNVVPWRPPGNRPPTQAEMDICRPFIE RQIALAEPKHLLLLGNLTARFFFGGTGTIHTLRGQWRDVAAGHLVLPALASLHPQELL NAPASKSLAWQDLLAFQAKISEG" misc_feature complement(930375..930869) /locus_tag="AGROH133_04935" /note="Uracil DNA glycosylase superfamily; Region: UDG; cl00483" /db_xref="CDD:193838" gene complement(931288..932586) /locus_tag="AGROH133_04936" /db_xref="GeneID:10266686" CDS complement(931288..932586) /locus_tag="AGROH133_04936" /note="Heat shock protein Hsp70; Molecular chaperone" /codon_start=1 /transl_table=11 /product="HSP70 family molecular chaperone" /protein_id="YP_004278231.1" /db_xref="GI:325292367" /db_xref="GeneID:10266686" /translation="MTQKRALGLDFGTTNTVMALSDGGGESRSMQFTSSAGTDDSMRT ALSFMKDSGLGAAALHVEAGHAAIRQFIDNAGDCRFLQSIKTFAASPLFQGTLIFAKR QSFEDLMDVFLRKLKTYAGAEWPSDVSTVIAGRPVRFAGSNPDETLALSRYNEALTRA GFPEIHYVYEPVAAAYYFAQSLKKDANVLVADFGGGTTDYSLIRFETHAGKLSATPIG HSGVGVAGDHFDFRMIDNLVSPEIGKGSKFKSFDKVLDVPSGYYVNFGRWNQLSIFKT SKEFTDLKSLVRSALEPDKLELFIDLVEHDEGYPLYQSISATKMALSSAEEAEFNFAP LGKAGRKMVKRSDFNNWIADDLAKIEGALDEVLEKTQVAPEAIDKVFLTGGTSFVPAV RELFTRRFDADRIETGGELLSIAHGLAMIGESGDIQRWTA" misc_feature complement(<931294..932583) /locus_tag="AGROH133_04936" /note="Molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: DnaK; COG0443" /db_xref="CDD:30792" gene 932886..933863 /locus_tag="AGROH133_04937" /db_xref="GeneID:10266687" CDS 932886..933863 /locus_tag="AGROH133_04937" /note="diguanylate cyclase (GGDEF) domain; FOG: GGDEF domain" /codon_start=1 /transl_table=11 /product="sensory box/GGDEF family protein" /protein_id="YP_004278232.1" /db_xref="GI:325292368" /db_xref="GeneID:10266687" /translation="MSRKQACSAHQDVPPGPEVLIRGDVEIFHSQLMNLMASSQQGYA LFDGSDELRFANAAFREALGMAPDGFPSWMELMRGGYRSSTGTAVETTDFELWLRSAR TRRGKLPYRTIETSLNDGRWMLTTETTLPGGWMLCVVTDVSELGIQLRDLRQERDRAL KSALSDELTGLGNRRYAMDILNQMLGPNKAQALAVIIMDIDHFKAVNDRFGHACGDLV LKDFATRLSAAIGRDDLVGRIGGEEFLLVLSGSRMLSAESTMQKLLATLTEASPLSDV PDFRYSCSAGIAFADPGESASDVLRRADTALYEAKNTGRNRFVVYGAAS" misc_feature 933006..933317 /locus_tag="AGROH133_04937" /note="PAS fold; Region: PAS_7; pfam12860" /db_xref="CDD:193334" misc_feature 933381..933842 /locus_tag="AGROH133_04937" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(933480..933482,933609..933611) /locus_tag="AGROH133_04937" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(933495..933497,933504..933509,933519..933521, 933531..933533,933597..933599,933603..933614) /locus_tag="AGROH133_04937" /note="active site" /db_xref="CDD:143635" misc_feature order(933585..933587,933669..933671) /locus_tag="AGROH133_04937" /note="I-site; other site" /db_xref="CDD:143635" gene complement(933886..934674) /locus_tag="AGROH133_04938" /db_xref="GeneID:10266688" CDS complement(933886..934674) /locus_tag="AGROH133_04938" /EC_number="1.1.1.100" /note="Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="NAD/NADP dependent oxidoreductase" /protein_id="YP_004278233.1" /db_xref="GI:325292369" /db_xref="GeneID:10266688" /translation="MDLGISGKRALVLASSRGLGLGIATALANEGVNVLLVGRSSEKL DANCKTINALGKGKADWVRGDLGDDNFVEAMVQAVNDKLGGIDILVNNTGGPTPGLAQ EITTEKLESFFQSMVLRVITLTNALLPQMKEQGFGRILTVASSGVFEPIPNLALSNTL RGALVGWSKTLSSEVAGFGITSNLLLPGRIHTDRIDELDGANAKRLGKSMEEIREASV KSIPAGRLGTVEEFAAAGAFLCSVPASYITGTMLRVDGGAAKSN" misc_feature complement(933904..934659) /locus_tag="AGROH133_04938" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(933895..934656) /locus_tag="AGROH133_04938" /note="putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; Region: BKR_like_SDR_like; cd05344" /db_xref="CDD:187602" misc_feature complement(order(934096..934101,934105..934116, 934192..934194,934204..934206,934243..934251, 934330..934332,934393..934401,934477..934485, 934555..934563,934618..934629,934633..934635)) /locus_tag="AGROH133_04938" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187602" misc_feature complement(order(934192..934194,934204..934206, 934243..934245)) /locus_tag="AGROH133_04938" /note="putative active site [active]" /db_xref="CDD:187602" gene 934818..935738 /locus_tag="AGROH133_04939" /db_xref="GeneID:10266689" CDS 934818..935738 /locus_tag="AGROH133_04939" /note="cation diffusion facilitator family transporter; Predicted Co/Zn/Cd cation transporters" /codon_start=1 /transl_table=11 /product="cation efflux system component" /protein_id="YP_004278234.1" /db_xref="GI:325292370" /db_xref="GeneID:10266689" /translation="MTEQSLLKFSIAITVLLAAFGIGAGLFSGSFAVVFDGVYALTDA FMTVLALLVARLIAASAAPRPGGRLAERFTMGFWHLEPMVLGLNGTLLMGAAIYALIN AIDSLMDGGRSIEFDYAIIVTFVSFAVSLVMAWFVKRQNRRLKSAFVALDAKSWLMSA LLSAALFLAFAIGYGLTGTAHQWIAPYIDPAVLALVCLIIIPMPLGNVKQALADILLV TPFEFKQHVDRVAAETVEKFGFASHYSYVARVGRGRQIELFFIVPKNWPPRRLEEWDA IRDEIGDALGGEGTDRWLTIVFTTDEEWAV" misc_feature 934818..935735 /locus_tag="AGROH133_04939" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" gene 935904..936446 /locus_tag="AGROH133_04947" /db_xref="GeneID:10266690" CDS 935904..936446 /locus_tag="AGROH133_04947" /note="Protein of unknown function (DUF1130); Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278235.1" /db_xref="GI:325292371" /db_xref="GeneID:10266690" /translation="MKIVYTIGYEGTDIERFVETLTTVGVEVVADVRAVPLSRKKGFS KNSLREHLESAGIKYLAMQELGDPKEGREAAKAGNFDSFRTIYSAHVDKSECAAAVEK LVALSEEKAVCLLCFERDPKTCHRFIVGERMSVFGYQMVHLFGDDATRYLRNKSKMPK RSQPPSRTVLSASDVAGRSS" misc_feature 935940..936299 /locus_tag="AGROH133_04947" /note="Protein of unknown function, DUF488; Region: DUF488; cl01246" /db_xref="CDD:194077" gene complement(936400..937209) /locus_tag="AGROH133_04948" /db_xref="GeneID:10266691" CDS complement(936400..937209) /locus_tag="AGROH133_04948" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278236.1" /db_xref="GI:325292372" /db_xref="GeneID:10266691" /translation="MTIVDTRILILCKTYPSPSGKYAETTCVAGMDESGKLVRLFPVP FRLIAKDQQFKKWQWIKAKVEKAKKDHRPESFTIKVDTINGGEVVAPGKDWAERRRLL SPIKVYPHFDDIEADRSAGRLSLAILRPTRIIGLEIERVSDPEWTDDELAKLVQEQKQ GGLFDDDDKRSIRTLRKLPFDFYYRYECHEGATAKVFKHKLVDWEIGALYWNCLRSHG DGWEKHFRDQLEKKIPSKDLMLLMGNQHRFQDQWLIISLIYPPHQMQTELF" misc_feature complement(<936775..936954) /locus_tag="AGROH133_04948" /note="polynucleotide 5'-kinase 3'-phosphatase; Region: PNK-3'Pase; TIGR01663" /db_xref="CDD:130724" gene 937760..939424 /gene="etf" /locus_tag="AGROH133_04949" /db_xref="GeneID:10266692" CDS 937760..939424 /gene="etf" /locus_tag="AGROH133_04949" /EC_number="1.5.5.1" /note="Electron transfer flavoprotein-ubiquinone oxidoreductase; Dehydrogenases (flavoproteins)" /codon_start=1 /transl_table=11 /product="electrotransfer ubiquinone oxidoreductase" /protein_id="YP_004278237.1" /db_xref="GI:325292373" /db_xref="GeneID:10266692" /translation="MTEAMELPEREAMEFDVVIVGAGPAGLAAAIRLKQVEPELSVVV LEKGAEVGAHILSGAVVDPIGIDRLLPGWREEEGHPFKTEVKDDQFMFLGPAGSIRLP NFMMPPLMNNHGNYIVSLGLVCRWLAEKAEALGVEIYPGFAATEVLYNEEGAVIGVAT GDMGIEKNGEPGPAFTRGMELHGKYVLIGEGVRGSLAKQLISRFDLSKDREPQKFGIG IKELWQVKPEHHKQGLVQHSFGWPLGFKTGGGSFLYHLEDNLVAVGFVVHLNYKNPYL YPFEEFQRFKTHPAIRDTFEGGKRISYGARAITEGGYQSVPKLTFPGGALIGCSAGFV NVPRIKGSHNAVLSGMLAAEKIAAAISAGRAHDEVAEIEAEWRDGDIGKDLKRVRNVK PLWSKFGTLVGVGLGGLDMWTNQLFGFSVFGTLKHGKTDAQSLEPASKHKPIAYPKPD GVLTFDRLSSVFLSSTNHEEDQPVHLQVKDMDLQKRSEHDVYAGPSTRYCPAGVYEWV EKDGEEVYVINAQNCVHCKTCDIKDPNQNINWVPPQGGEGPVYANM" misc_feature 937796..939163 /gene="etf" /locus_tag="AGROH133_04949" /note="Dehydrogenases (flavoproteins) [Energy production and conversion]; Region: FixC; COG0644" /db_xref="CDD:30989" misc_feature 937799..>938758 /gene="etf" /locus_tag="AGROH133_04949" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 938987..939292 /gene="etf" /locus_tag="AGROH133_04949" /note="Electron transfer flavoprotein-ubiquinone oxidoreductase; Region: ETF_QO; pfam05187" /db_xref="CDD:147396" misc_feature 939248..939346 /gene="etf" /locus_tag="AGROH133_04949" /note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838" /db_xref="CDD:193313" gene 939727..940467 /locus_tag="AGROH133_04950" /db_xref="GeneID:10266693" CDS 939727..940467 /locus_tag="AGROH133_04950" /note="Pentapeptide repeat; Uncharacterized low-complexity proteins" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278238.1" /db_xref="GI:325292374" /db_xref="GeneID:10266693" /translation="MSGFQRLNIVRNTRIVAGLAAGMVVAVSLSGSPLMAASCRADAM AGIDWRECNKRLLMLGGSNLDSAMLYGTDFTYTDLRGSSLKGANLEKAKLIRTALGEA NLQGANLTKVEAYRSDFSAADATSAKFINAEMQRTNFNKAKLDGADFTKAELGRAEFQ DASLSGSKFSLTNLSRASFQGAKLGGAVDFANAFLLLTRIEGVDLSAATGLEQKQIDI ACGDAKTKLPSGLTTPAAWPCPEDPEDD" misc_feature 939826..940455 /locus_tag="AGROH133_04950" /note="Pentapeptide repeats containing protein [Function unknown]; Region: COG1357" /db_xref="CDD:31548" misc_feature 939955..940062 /locus_tag="AGROH133_04950" /note="Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805" /db_xref="CDD:109845" misc_feature 940120..940236 /locus_tag="AGROH133_04950" /note="Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805" /db_xref="CDD:109845" gene complement(940523..941539) /locus_tag="AGROH133_04953" /db_xref="GeneID:10266694" CDS complement(940523..941539) /locus_tag="AGROH133_04953" /EC_number="1.6.5.5" /note="Alcohol dehydrogenase GroES-like domain; NADPH:quinone reductase and related Zn- dependent oxidoreductases" /codon_start=1 /transl_table=11 /product="Zn-dependent oxidoreductase" /protein_id="YP_004278239.1" /db_xref="GI:325292375" /db_xref="GeneID:10266694" /translation="MRAIGYKTSQPITATDALIDLDLPQPEATGHDILVEVKAVSVNP VDTKVRRNQAPENGAARVLGFDAAGVVKAVGDKVSLFKPGDEVFYAGVINRPGSNSEF HLVDERIVGAKPKSLNFEEAAALPLTAITAYETLFDRLRVTEPVPGAANAVLVIGGAG GVGSIAIQLLRALTDLTVIATASRPETMQWAKDLGAHHVVDHSKPIAPQVEALGLGAP GFVFSTTHSDIHAADSVATIAPQGRFALIDDPAGGFDAMAFKRKCVSIHWEMMFARAV FQTPDMIEQHKLLNHVAELVDAGKIKTTLTEVFGTINAANLIKAHALIESNTAKGKIV LSGF" misc_feature complement(940532..941539) /locus_tag="AGROH133_04953" /note="Arginate lyase and other MDR family members; Region: AL_MDR; cd08252" /db_xref="CDD:176214" misc_feature complement(940526..941536) /locus_tag="AGROH133_04953" /note="zinc-binding alcohol dehydrogenase family protein; Region: adh_fam_1; TIGR02817" /db_xref="CDD:163031" misc_feature complement(order(940727..940735,940796..940801, 940859..940861,940865..940870,940934..940936, 940979..940981,940991..940996,941051..941056, 941060..941071,941147..941149,941159..941161, 941396..941398,941405..941413)) /locus_tag="AGROH133_04953" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176214" misc_feature complement(order(940703..940705,940709..940711, 940718..940723,940730..940765,940769..940783, 940793..940795,940817..940822,940847..940849, 941123..941128,941138..941140)) /locus_tag="AGROH133_04953" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176214" gene 941643..942032 /locus_tag="AGROH133_04954" /db_xref="GeneID:10266695" CDS 941643..942032 /locus_tag="AGROH133_04954" /note="Helix-turn-helix, HxlR type; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="HxlR family transcriptional regulator" /protein_id="YP_004278240.1" /db_xref="GI:325292376" /db_xref="GeneID:10266695" /translation="MSRPRAKLTGNFPGCPVESALSFLDGKWKGVILYHLINEGTLRF NELRRHIPSVTQRMLTKQLRELEEAGLISRTVFPVVPPRVDYALTPLGETMKPVISAL KSWGDAHVVCKNGAKYTLHPEPAEKAA" misc_feature 941676..941993 /locus_tag="AGROH133_04954" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 942153..942989 /gene="bacA" /locus_tag="AGROH133_04955" /db_xref="GeneID:10266696" CDS 942153..942989 /gene="bacA" /locus_tag="AGROH133_04955" /EC_number="3.6.1.27" /note="phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; Uncharacterized bacitracin resistance protein" /codon_start=1 /transl_table=11 /product="undecaprenyl-diphosphatase" /protein_id="YP_004278241.1" /db_xref="GI:325292377" /db_xref="GeneID:10266696" /translation="MSIGWLEAGFLGLLQGLTEFLPVSSSAHLRIAGEFLPSGADPGA AFTAITQIGTEAAVLVYFWSDIMRIAAAWLRQNLRLGPYDKSDARLGWLIIVGSVPIV LLGLFFKDAIEHSLRNLYITAVMLIVFGIILGVADRIGKKRYKLNQLIWRDGILFGFA QAMALIPGVSRSGGTISAGLLLGYTREAAARYSFLLAVPAVFGSGFYQLFKSIGEENP VGWGQTGLATLIAFVVGYAVIVVFLKQVSTKSYMPFVWYRVVIGVILLGLLGTGVISA GG" misc_feature 942159..942926 /gene="bacA" /locus_tag="AGROH133_04955" /note="Bacitracin resistance protein BacA; Region: BacA; cl00858" /db_xref="CDD:186224" gene 943105..944205 /locus_tag="AGROH133_04962" /db_xref="GeneID:10266697" CDS 943105..944205 /locus_tag="AGROH133_04962" /note="RecF like; Predicted ATPase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278242.1" /db_xref="GI:325292378" /db_xref="GeneID:10266697" /translation="MIKTVENSDQISRLVLNGYKSIEHCDLEMGRLNVLIGANGAGKS NFIGFFRLINRILDKQLQISVGLAGGPDALLHFGRKKTEELSAELYFGQNGYRFTLRP TEDNRMLFSKEALWWNQHGDWRSKSGHFETYVEEQRSQTRIYNYVVPAMRSWRLYHFH DTSGSALVKQVHNINDNAFLRDDAKNLAAFLLRLQLNHEEHYQRIVKAIRLVAPFFGD FHLRPTVGSEEKIQMEWTEQGQDEPFTASALSDGTLRFMCLATVLLQPKAFMPAAILI DEPELGLHPFAISVLGGLMKSASRERQLIVSTQSVELVNEFDAEDLIVVDKRGGASTF RRPDTEALKEWLEEYTLGDLWKKNLLGGRPGR" misc_feature 943129..944151 /locus_tag="AGROH133_04962" /note="Predicted ATPase [General function prediction only]; Region: COG4637" /db_xref="CDD:34256" misc_feature 943135..>943977 /locus_tag="AGROH133_04962" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 944202..944852 /locus_tag="AGROH133_04963" /db_xref="GeneID:10266698" CDS 944202..944852 /locus_tag="AGROH133_04963" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278243.1" /db_xref="GI:325292379" /db_xref="GeneID:10266698" /translation="MTRIYILAEGQTEEAFITELLTPHYALQGLYLTPIIVTTSPGHK GGVVSYAKVRPQIERLCKQDPTARVTTMFDLYALPKDFPGKEKPDYKRLVNGREKATF LEAELKADLDYNNFIPNLLVHEFEALLFSQLSAFEQWTDDDTVWQPLRILRENLMPED INDGVETAPSKRILSLMPHYQKTLHGPLIACDIGLDTIRSACPHFHCWLQEIEQLI" gene complement(944908..946281) /gene="mgtE" /locus_tag="AGROH133_04964" /db_xref="GeneID:10266699" CDS complement(944908..946281) /gene="mgtE" /locus_tag="AGROH133_04964" /note="Divalent cation transporter; Mg/Co/Ni transporter MgtE (contains CBS domain)" /codon_start=1 /transl_table=11 /product="magnesium transport protein" /protein_id="YP_004278244.1" /db_xref="GI:325292380" /db_xref="GeneID:10266699" /translation="MNFHTLSQRASKAARLLRSGNAGSTTIAERVEHLNTLDTHEAVA ALLAMPQAKAVAILDRPELHDAAAIIAGIPLDQAARFVNLMSDDRVADVMAEMDEEPR AKLFSRLDRTTALSIKHLMGYPPRTAGSIMTTEFVSVPDNWTVEQTLSHIRVVERSRE TVYAIYVLAQDGTLSTVVTLRRLLTGEAGASILSVASKEGIVCASPLMSQEDVARLIR KHDLLALPVVDDHSHILGIVTVDDVIDTMIADTTEDAHKFGGMEALGKPYMAMGFPDM IRKRAGWLAALFLGEMLTASAMQHFEGELEKAVVLTLFIPLIMSSGGNSGSQATSLII RALALGELKLSDWWRVLLREIPTGLTLGCILGAIGFLRLTIWQQAGFYDYGDHWLLVG ATVFAALVGIVTFGSLAGSMLPFLLQRLRLDPASASAPFVATLVDVSGLVIYFSVALV ILSGTLL" misc_feature complement(944914..946203) /gene="mgtE" /locus_tag="AGROH133_04964" /note="Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]; Region: MgtE; COG2239" /db_xref="CDD:32420" misc_feature complement(945907..946203) /gene="mgtE" /locus_tag="AGROH133_04964" /note="MgtE intracellular N domain; Region: MgtE_N; cl15244" /db_xref="CDD:197452" misc_feature complement(945541..945870) /gene="mgtE" /locus_tag="AGROH133_04964" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other...; Region: CBS_pair_Mg_transporter; cd04606" /db_xref="CDD:73106" misc_feature complement(944938..945342) /gene="mgtE" /locus_tag="AGROH133_04964" /note="Divalent cation transporter; Region: MgtE; cl00786" /db_xref="CDD:120115" gene complement(946568..947812) /locus_tag="AGROH133_04968" /db_xref="GeneID:10266700" CDS complement(946568..947812) /locus_tag="AGROH133_04968" /note="Major facilitator superfamily; Arabinose efflux permease" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004278245.1" /db_xref="GI:325292381" /db_xref="GeneID:10266700" /translation="MSHSNLSEARLEAESETVVAARPAVALTPFAVALIELALAAGGF GIGTGEFAIMGLLPDVATTYGVTVPQAGYVITAYALGVVIGAPIIAVLAARMTRRTLL LGLMGLFALGNILSAVAPDFLSFTVLRFITGLPHGAYFGVAALVAASMAPIHKRARAV GRVMLGLTIATLLGTPLATFFGQMLSWRAAFMLVGGIGLLTVALLWLFQPRDRVEEGA SVWRELGAFRRVQVWLTLAIASVGFGGMFSVFSYIAKTTTDVAMMPVSTVSMVLALFG IGMNVGNVVGSRLADISLNGTIGGMLAFNVVVMAVFGMTAHDPFMMCLCVFLIGCGFA ACPAVQTRLMDVAADAQTLAAASNHSAFNIANALGAWLGGMVIAMGYGYASTGYVGAV LSLLGLGVFLVSVTVERRAKAG" misc_feature complement(946655..947743) /locus_tag="AGROH133_04968" /note="Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814" /db_xref="CDD:32643" misc_feature complement(946658..947704) /locus_tag="AGROH133_04968" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(946703..946705,946712..946717, 946724..946729,946736..946741,946772..946774, 946781..946786,946796..946798,946805..946810, 946817..946819,946964..946966,946976..946978, 946985..946987,946997..946999,947009..947011, 947051..947053,947060..947065,947072..947077, 947084..947086,947300..947302,947318..947323, 947330..947335,947369..947371,947378..947383, 947390..947395,947402..947407,947543..947548, 947552..947557,947567..947569,947576..947581, 947588..947590,947639..947644,947648..947656, 947663..947665)) /locus_tag="AGROH133_04968" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 948048..948956 /locus_tag="AGROH133_04981" /db_xref="GeneID:10266701" CDS 948048..948956 /locus_tag="AGROH133_04981" /note="Diacylglycerol kinase catalytic domain (presumed); Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase" /codon_start=1 /transl_table=11 /product="diacylglycerol kinase catalytic region" /protein_id="YP_004278246.1" /db_xref="GI:325292382" /db_xref="GeneID:10266701" /translation="MKLIAIFNRDGGTFRTTDMDAYCDHAREVFSRAGHTIDCRVVSG KEVVEEMERAADEPDIEGIIAGGGDGTISAAAGIAWKHGIALGIVPAGTMNLFARSLK LPLDIRHVLETLANGEIANVDIASANGRLFVHQFSAGLHSRMVRYRNNLAFASRLGKI KASVRAAISVILNPPVFEVEYTVNGKTQRRKVSAISVSNNEFGQNSLLVADNVSGGHL GFYLTDPLRPSGVARLAFDILRGKLKENAAVTATTVTGVELHFPKKRHDVRCVIDGEL LPMERDVALEVHAGELKVLVGRGVLA" misc_feature 948048..948941 /locus_tag="AGROH133_04981" /note="Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]; Region: LCB5; COG1597" /db_xref="CDD:31785" misc_feature 948051..948431 /locus_tag="AGROH133_04981" /note="Diacylglycerol kinase catalytic domain; Region: DAGK_cat; cl01255" /db_xref="CDD:194084" gene 949167..950543 /gene="bioA" /locus_tag="AGROH133_04982" /db_xref="GeneID:10266702" CDS 949167..950543 /gene="bioA" /locus_tag="AGROH133_04982" /EC_number="2.6.1.62" /note="Pyridoxal phosphate-dependent transferase, major region, Aminotransferase class-III" /codon_start=1 /transl_table=11 /product="Adenosylmethionine-8-amino-7- oxononanoateaminotransferase" /protein_id="YP_004278247.1" /db_xref="GI:325292383" /db_xref="GeneID:10266702" /translation="MNEVSKPVSNLAAIDAAHHLHPFSDMGKLNASGTRIIERAEGVF IYDSTGKKYLDAFAGLWCVNIGYGRREIADVVQRQMNELPYYNAFFGTTTPSATLLAQ KIASRAGPKMNHVFFTNSGSEATDTWFRMARVYWKALGHPTKTKVIARRNGYHGSTVA GASLGGMKWMHEQGNLPIEGIAHIGQPYWYAEGGDLSPAEFGLKVARELEAKIDELGE ENVAAFVAEPIQGAGGVIVPPETYWPEIARICKARNILLVSDEVICGFGRLGSWFGYQ RFGVEPDLAPVAKGLSSGYLPIGGVLVSDRVADVMLSEVGDFNHGFTYSGHPVCAAAA LENIRIIEDEGLVERVRDDIGPYFSQGWKSLTDHELVGEAVNVGLMGGLQLAADKATR RRFAKPDDIGTAVRNHCLANGLVMRATGDRMLASPALTISRSEVDQIIETLRKGLDHL RDTPEHFQ" misc_feature 949179..950510 /gene="bioA" /locus_tag="AGROH133_04982" /note="putative aminotransferase; Validated; Region: PRK07480" /db_xref="CDD:180994" misc_feature 949197..950507 /gene="bioA" /locus_tag="AGROH133_04982" /note="Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase...; Region: OAT_like; cd00610" /db_xref="CDD:99735" misc_feature order(949524..949532,949626..949631,949635..949637, 949845..949847,949944..949946,949950..949955, 950031..950033) /gene="bioA" /locus_tag="AGROH133_04982" /note="inhibitor-cofactor binding pocket; inhibition site" /db_xref="CDD:99735" misc_feature order(949527..949532,949626..949631,949845..949847, 949944..949946,949953..949955,950031..950033) /gene="bioA" /locus_tag="AGROH133_04982" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 950031..950033 /gene="bioA" /locus_tag="AGROH133_04982" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 950601..951071 /locus_tag="AGROH133_04983" /db_xref="GeneID:10266703" CDS 950601..951071 /locus_tag="AGROH133_04983" /note="OsmC-like protein; Predicted redox protein, regulator of disulfide bond formation" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278248.1" /db_xref="GI:325292384" /db_xref="GeneID:10266703" /translation="MAGQEHHYAVQVKWTGNRGKGTSGYRDYERDYTISTSGKADIVG SSDPAFRGDASRWNPEDLLVASLSACHKLWYLHFCSVNGIIVEDYVDNAEGTLAMEKD GAGQFSEVVLKPVITISKGDLARADELHHDAHDKCFIARSVNFPVRVEGTVKVV" misc_feature 950601..951062 /locus_tag="AGROH133_04983" /note="OsmC-like protein; Region: OsmC; cl00767" /db_xref="CDD:193933" gene complement(951076..951465) /locus_tag="AGROH133_04984" /db_xref="GeneID:10266704" CDS complement(951076..951465) /locus_tag="AGROH133_04984" /note="PilT protein, N-terminal, PIN domain; Predicted nucleic acid-binding protein, contains PIN domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278249.1" /db_xref="GI:325292385" /db_xref="GeneID:10266704" /translation="MIVADTSAWISLIRKDSPALALKLRTAITQSNILVGDIVLLEVL QGARDGQHARRLEQMLSEFPCVAMMSPQLAIKAASNYRFLRGRGYTIRKNNDLIIGTY CIENGYELLHNDRDFQPMADHLGLRLA" misc_feature complement(951082..951453) /locus_tag="AGROH133_04984" /note="PIN domain of the Rv0301 toxin of Mycobacterium tuberculosis and other uncharacterized, annotated PilT protein domain proteins; Region: PIN_MtRv0301; cd09882" /db_xref="CDD:189052" misc_feature complement(order(951124..951126,951178..951180, 951340..951342,951451..951453)) /locus_tag="AGROH133_04984" /note="putative active site [active]" /db_xref="CDD:189052" gene complement(951462..951692) /locus_tag="AGROH133_04985" /db_xref="GeneID:10266705" CDS complement(951462..951692) /locus_tag="AGROH133_04985" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278250.1" /db_xref="GI:325292386" /db_xref="GeneID:10266705" /translation="MRTNIELDDALIAEAMEITGLSTKKATVEKALRDLVRIHRQMRA LDALEGMGWEGNLDEMRTDWDAETDWDIEDSK" misc_feature complement(951555..951692) /locus_tag="AGROH133_04985" /note="Uncharacterized protein conserved in bacteria (DUF2191); Region: DUF2191; cl02270" /db_xref="CDD:194287" gene complement(951760..953265) /gene="amn" /locus_tag="AGROH133_04986" /db_xref="GeneID:10266706" CDS complement(951760..953265) /gene="amn" /locus_tag="AGROH133_04986" /EC_number="3.2.2.4" /note="Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; Nucleoside phosphorylase" /codon_start=1 /transl_table=11 /product="AMP nucleosidase" /protein_id="YP_004278251.1" /db_xref="GI:325292387" /db_xref="GeneID:10266706" /translation="MTIAKRTIPPFSFISPEPFAPQTFTDPKEAVEALTALYERNTAF LINSFTELAKGAPITGRYRACYPQVSLETSTFGHVDSRLSYGHVTSPGVYTTTITRPE LFRHYLKEQLGLLIKNHGVPVTVAESATPIPLHFAFGEGAYVEAAAASSLSDVPLRDL FDTPDLNNTDDLIANGEYDQVPGEPAPLAPFTAQRIDYSLARLSHYTATSASHFQNFV LFTNYQFYIDEFAAWARQLMKNGGEGYTAFVEPGNIITPAGSDRPDTDAVLGRLPQMP AYHLKKKGHAGITLVNIGVGPSNAKTITDHIAVLRPHAWLMVGHCAGLRNSQRLGDYV LAHAYVREDHVLDDDLPVWVPIPALAEVQLALEGAVAEVTGYEGFELKRIMRTGTVAT IDNRNWELRDQAGPVKRLSQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGE LKLPGMATEFYRTQVAQHLQIGIRAVQKLAAMPTETLHSRKLRSFYETAFQ" misc_feature complement(951763..953202) /gene="amn" /locus_tag="AGROH133_04986" /note="AMP nucleosidase; Provisional; Region: PRK08292" /db_xref="CDD:181358" misc_feature complement(952705..953184) /gene="amn" /locus_tag="AGROH133_04986" /note="Bacterial AMP nucleoside phosphorylase N-terminus; Region: AMNp_N; pfam10423" /db_xref="CDD:151003" misc_feature complement(951826..952605) /gene="amn" /locus_tag="AGROH133_04986" /note="Phosphorylase superfamily; Region: PNP_UDP_1; cl00303" /db_xref="CDD:193757" gene complement(953368..953541) /locus_tag="AGROH133_04987" /db_xref="GeneID:10266707" CDS complement(953368..953541) /locus_tag="AGROH133_04987" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278252.1" /db_xref="GI:325292388" /db_xref="GeneID:10266707" /translation="MTTSFSNGLFSALRLVLMASIFLGPVAGLAVYKADPRPASKGAG FVLLMSLQRGALG" gene complement(953552..953734) /locus_tag="AGROH133_04990" /db_xref="GeneID:10266708" CDS complement(953552..953734) /locus_tag="AGROH133_04990" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278253.1" /db_xref="GI:325292389" /db_xref="GeneID:10266708" /translation="MDMTKLISRLAIFAFLMAIFAMSFASLVVNPNRSFQRVNAGAAL ACQHSPAPAANCPVVL" gene complement(953894..954490) /locus_tag="AGROH133_04993" /db_xref="GeneID:10266709" CDS complement(953894..954490) /locus_tag="AGROH133_04993" /note="2-phosphoglycerate kinase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278254.1" /db_xref="GI:325292390" /db_xref="GeneID:10266709" /translation="MPATLSIILISGTSHVGKSTLAGLLSEKLHCEAISTDSLARHPG RPWPGIPAPVEEYYRQLSAETIHWFLKVHHQNIWPLVRGLIDSKTGTGNIVVFEGAAL RPEFIAPLLGSTVAGIFLHAQNDFLSDRMRAHAGYKDATAGQRRTMDAFIERSLRENT EMLASARHHHVPIVDIANPEAFDSLVNELTARAVASPA" misc_feature complement(953909..>954472) /locus_tag="AGROH133_04993" /note="2-phosphoglycerate kinase [Carbohydrate transport and metabolism]; Region: COG2074" /db_xref="CDD:32257" misc_feature complement(<954332..954472) /locus_tag="AGROH133_04993" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene complement(954612..954950) /locus_tag="AGROH133_04994" /db_xref="GeneID:10266710" CDS complement(954612..954950) /locus_tag="AGROH133_04994" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278255.1" /db_xref="GI:325292391" /db_xref="GeneID:10266710" /translation="MKRVMMIAAGLLIGSNLAFAAEPIEGNWKTASGETAVIGPCGAA FCVTLKTGKHAGKQIGKLSGKGNSYSGDITDPANDKTYSGSGTVSGNSLSMKGCVLKI LCKSQTWTRL" misc_feature complement(954615..>954950) /locus_tag="AGROH133_04994" /note="Uncharacterized protein conserved in bacteria (DUF2147); Region: DUF2147; cl01951" /db_xref="CDD:194215" gene 955432..955698 /locus_tag="AGROH133_04996" /db_xref="GeneID:10266711" CDS 955432..955698 /locus_tag="AGROH133_04996" /note="Sel1-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278256.1" /db_xref="GI:325292392" /db_xref="GeneID:10266711" /translation="MARFEIRDIEMAVAGGETRADTLCNLGLVYATGRGCKVDLVAAH KWLNIAAIRGSERAASLRADLARNMTKAELAEALRAARDWMTMH" misc_feature <955462..>955635 /locus_tag="AGROH133_04996" /note="FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790" /db_xref="CDD:31133" gene complement(956111..957223) /gene="hisC" /locus_tag="AGROH133_04997" /db_xref="GeneID:10266712" CDS complement(956111..957223) /gene="hisC" /locus_tag="AGROH133_04997" /EC_number="2.6.1.9" /note="catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate; Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase" /codon_start=1 /transl_table=11 /product="histidinol-phosphate aminotransferase" /protein_id="YP_004278257.1" /db_xref="GI:325292393" /db_xref="GeneID:10266712" /translation="MSAFSRLTPLAVSLPSTVPFVGPEAIERGRGLKVEARIGANESG FGPAPSVLMAMRDAAAETWMYSDPENFELKEALAIHHGVSRGNIAIGGGVDGLLGEIA RLIVEPGTPVVTSLGGYPTFNYHVNGFGGKLVTTPYVDDHENLDGLLDLVIRENAPLV YFANPDNPMGSWWEASEVVAFARALPETCLLILDEAYCETAPASAVPSIDALIGQPNI LRMRTFSKAYGLAGARVGYAIGTLGNVEAFDKIRNHFGMARVSVAGALAALKDQAYLH DVVGKIAVARDRISAIARSNGLSPLPSATNFVTIDCQRDGTYARAIVDGLMEHGVFIR MPGVAPLNRCIRVSVGPDDKLDLFEQALPKVIKALG" misc_feature complement(956114..957208) /gene="hisC" /locus_tag="AGROH133_04997" /note="Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]; Region: HisC; COG0079" /db_xref="CDD:30428" misc_feature complement(956138..957109) /gene="hisC" /locus_tag="AGROH133_04997" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(956522..956524,956546..956551, 956555..956557,956633..956635,956723..956725, 956867..956869,956939..956947)) /gene="hisC" /locus_tag="AGROH133_04997" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(956432..956434,956441..956443, 956522..956530,956654..956656,956837..956839, 956936..956938)) /gene="hisC" /locus_tag="AGROH133_04997" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(956546..956548) /gene="hisC" /locus_tag="AGROH133_04997" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(957383..957730) /locus_tag="AGROH133_04998" /db_xref="GeneID:10266713" CDS complement(957383..957730) /locus_tag="AGROH133_04998" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278258.1" /db_xref="GI:325292394" /db_xref="GeneID:10266713" /translation="MALHIDHRQSVPQDEQYEKFQIDRPGKITFIGHHLSAKDTMRCL VRSISLYGAEIEVSPHLEMPTNFYLEILGIRDEIGCNLIRREEEKVTIGFNMLIDAEF LHHVRRLSFETSV" gene complement(957767..957880) /locus_tag="AGROH133_04999" /db_xref="GeneID:10266714" CDS complement(957767..957880) /locus_tag="AGROH133_04999" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278259.1" /db_xref="GI:325292395" /db_xref="GeneID:10266714" /translation="MHFLKGNIGFRQAVWPMSRRRTDNCADFLHALARKPR" gene 958059..959276 /locus_tag="AGROH133_05000" /db_xref="GeneID:10266715" CDS 958059..959276 /locus_tag="AGROH133_05000" /EC_number="1.18.1.2" /note="NAD(P)H-nitrite reductase" /codon_start=1 /transl_table=11 /product="ferredoxin reductase" /protein_id="YP_004278260.1" /db_xref="GI:325292396" /db_xref="GeneID:10266715" /translation="MAGRLVIVGAGQAAFALAAKLRALKDERPITIIGSEDAYPYQRP PLSKKYLLGEMSFDRLMFRPEEWYAENNVDIRLSTFVEEIDRAAKSVRMQDGSTLSYD KLVLATGAAPRELPASIGGDLEGVLTVRDKRDADRLFEEMKPGRRLLVIGGGYIGLEA AAVARKLGLEVTLIEMADRILQRVAAKETADIMRGIHQEHGVSIREKTGLVRLVGMDG RVAAAELSDGSVLDVDFVIVGIGVTPNDRLARESGLDVGNGIVVDEHTRSSDRDIHAV GDCALLPWRGQLVRLESVQNAVDQAEAAAHVLAGAEVAYDAKPWFWSDQYEVKLQIAG FNLGYDETVLRPGTREGSWSVWYFRDGRFVAVDAVNDAKAYVSGKKLLDTGAEPDRAI LADPSADLKLLLS" misc_feature 958146..959243 /locus_tag="AGROH133_05000" /note="phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional; Region: PRK09754" /db_xref="CDD:170080" misc_feature 958497..958742 /locus_tag="AGROH133_05000" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 959284..960084 /locus_tag="AGROH133_05001" /db_xref="GeneID:10266716" CDS 959284..960084 /locus_tag="AGROH133_05001" /EC_number="4.1.2.-" /codon_start=1 /transl_table=11 /product="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" /protein_id="YP_004278261.1" /db_xref="GI:325292397" /db_xref="GeneID:10266716" /translation="MPAPENRFKTAIHAGRPQIGLWLDMGEAITAEIAGTAGFDWLVI DGEHGPNDLRSIIDQLRALATSPAEPVVRVPVGESWMIKQLLDAGARTLLVPMVDSAA QAEALVSAMHYPPRGIRGMGAAVARASAFNTITDYADSASDSVCLLVQAETRAAINDL DNILAVEGVDGIFIGPADLAADMGYLGRLDEPEVQAVIEAAIVKIVAAGKAAGILTFN ETFNRRYLELGASFVAVGADVTEFSNTLRALSSRYKGGAAPASSKSGY" misc_feature 959284..960048 /locus_tag="AGROH133_05001" /note="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]; Region: HpcH; COG3836" /db_xref="CDD:33628" misc_feature 959299..960045 /locus_tag="AGROH133_05001" /note="Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155" /db_xref="CDD:195807" gene complement(960088..960264) /locus_tag="AGROH133_05002" /db_xref="GeneID:10266717" CDS complement(960088..960264) /locus_tag="AGROH133_05002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278262.1" /db_xref="GI:325292398" /db_xref="GeneID:10266717" /translation="MVFSSDLEEALSDFARDHGIDRDEAIQRIVRAALINNGYLASGE EGIPPEKLNASNDD" gene complement(960360..960701) /locus_tag="AGROH133_05003" /db_xref="GeneID:10266718" CDS complement(960360..960701) /locus_tag="AGROH133_05003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278263.1" /db_xref="GI:325292399" /db_xref="GeneID:10266718" /translation="MAQTKLNVVEDTIENQIAELRSQISSLSKSVSARAEGVGEDASE FLDEARGRVRKAASNVRAQGQNVVEAVKENPGTATSLLTIVGALGFAIGYAVGAGTQQ SSSNSSLYRWR" misc_feature complement(960420..960671) /locus_tag="AGROH133_05003" /note="Bacterial protein of unknown function (DUF883); Region: DUF883; cl01888" /db_xref="CDD:186489" gene 960865..960955 /locus_tag="AGROH133_05005" /db_xref="GeneID:10266719" tRNA 960865..960955 /locus_tag="AGROH133_05005" /product="tRNA-Ser" /anticodon=(pos:960899..960901,aa:Ser) /db_xref="GeneID:10266719" gene complement(961569..961691) /locus_tag="AGROH133_05006" /db_xref="GeneID:10266720" CDS complement(961569..961691) /locus_tag="AGROH133_05006" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278264.1" /db_xref="GI:325292400" /db_xref="GeneID:10266720" /translation="MPKDSIPCPIPVFLEAKRSTASLLVVKIQKVSPLAIANIR" gene 961734..962801 /locus_tag="AGROH133_05007" /db_xref="GeneID:10266721" CDS 961734..962801 /locus_tag="AGROH133_05007" /note="Porin, alpha proteobacteria type" /codon_start=1 /transl_table=11 /product="outer membrane protein A2 precursor" /protein_id="YP_004278265.1" /db_xref="GI:325292401" /db_xref="GeneID:10266721" /translation="MNIKSLLIGSAAALAAVSGAHAADAIVAAEPEPLEYVRVCDAFG TGFFYIPGTETCLKFDGYIRFQTDFGRNKSGTSDWDSFTRAQFNIDTRTDTELGALRG YIGLRGQADNDSNRGVVVDQAFIELGGLKVGYYYNWWDDGLSGEVDVLSSNQTRLNAV RYTYDAGSFYVGVAVEELEAARGGSNISDDFLKGGSFERANNVGIDAIIGAKFGAVSA NLLGGYDTDAEEGAVRAIVTADIGPGTLGLSGVWASGANRYYEESEWTVAAEYAIKAT DKLTITPGFQYFNTIDLGANNDWVGDRDAWKAGVAVGYKITQGLSTLVSVNYQDVDGT EGVDTGAGDSWVGFVRLQRTF" misc_feature 961821..962732 /locus_tag="AGROH133_05007" /note="Porin subfamily; Region: Porin_2; pfam02530" /db_xref="CDD:190338" gene 963394..964440 /locus_tag="AGROH133_05009" /db_xref="GeneID:10266722" CDS 963394..964440 /locus_tag="AGROH133_05009" /note="Porin, alpha proteobacteria type" /codon_start=1 /transl_table=11 /product="outer membrane protein A2 precursor" /protein_id="YP_004278266.1" /db_xref="GI:325292402" /db_xref="GeneID:10266722" /translation="MNIKSLLIGSAAALAAVSGAHAADAIVAAEPEPLEYVRVCDAFG TGFFYIPGTETCLKFDGYIRFQTDFGRNQSGTSDWNSFTRAQFNIDTRTDTELGALRG YIGLRGQANNDSDRGVNVDQAFIELGGLKVGYMYTWWDDDLSGETDILSSNSTRSNAL RYTYDAGSFYAGISVEELDSVRDGNSNLGVAKGGVFEGPNNVGVSGIIGAKFGAVSAN LLGSYDTDQENGAIRAILTADIGPGTFGLSGVWASGANYYYEESEWAVAAEYAIKATD KLTITPGAQYLGTIDIAPDGDFTGDNDAWRAGLTVDYKITQGLDAKIAANYQDVDGPT GDSWTGFVRLQRTF" misc_feature 963481..964389 /locus_tag="AGROH133_05009" /note="Porin subfamily; Region: Porin_2; pfam02530" /db_xref="CDD:190338" gene complement(964586..966712) /locus_tag="AGROH133_05011" /db_xref="GeneID:10266723" CDS complement(964586..966712) /locus_tag="AGROH133_05011" /EC_number="3.2.1.-" /note="Lytic transglycosylase-like, catalytic; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)" /codon_start=1 /transl_table=11 /product="soluble lytic transglycosylase" /protein_id="YP_004278267.1" /db_xref="GI:325292403" /db_xref="GeneID:10266723" /translation="MKRQYKKVDCFRPVMKSGMKKTVWGLMAAGLAATVWNALAGPVP EAAVPLPYVKPNAPAVPAFMPASPEITGAIPRLNRPDDASQLKAGLDALSSRDTTRAI ALRNAMQTGSLDRHILTWAIAISGQKDVPSAEITTAQSELAGWPGAATLRANSEKALY RENPPAPQVLAAFGSGRPETAEGTVVLAKALTSSGKALEAQRLIRQLWVSEGMDKDME DRVLAEFPTYLTPADHKARMDYLMYRSRIGQAKRFGDLGKAQSLYNAWAAVLQRSGNA VALLGKVDANLRSDPAFLFARIENLRNQQKYPEAAALLKQAPKDTAKLVNPGEWWNER RIIARGVADLGDFAEAYRIVANHSATSAVDVADAEFHAGWYALRALRDPATASRHFNT LLQTSNRPLSASRAYYWLGRAAEVGGPGNARDFFTKAAAHSGTFYGQLAAARIDAKTL NVTYPAPSAADRERFAGREAVRAIDRLEAAGYGWRADSLYRSLADQLDSPGELAILAA RAEGNGNHQVSLQIGKTAFSRGIDAAALAYPLGVIPASANIAGSGKALAYAIARQESA FNPAAVSAANARGLLQLLPGTAKGVAGRHGLPYTQAMLTSDAGYNATLGAHYLGEQID SFGGSYILTFIAYNAGPKRVPEWIARYGDPRGKPIDDVVDWIERIPFPETRNYVQRVM ENYQVYKTRLGQQADIVDDLRHGRAG" misc_feature complement(964610..965503) /locus_tag="AGROH133_05011" /note="Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741" /db_xref="CDD:31084" misc_feature complement(964655..965050) /locus_tag="AGROH133_05011" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature complement(order(964802..964804,964859..964861, 964961..964963,965021..965023)) /locus_tag="AGROH133_05011" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature complement(965021..965023) /locus_tag="AGROH133_05011" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 966980..967930 /gene="dapA" /locus_tag="AGROH133_05014" /db_xref="GeneID:10266724" CDS 966980..967930 /gene="dapA" /locus_tag="AGROH133_05014" /EC_number="4.2.1.52" /note="catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; Dihydrodipicolinate synthase/N- acetylneuraminate lyase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_004278268.1" /db_xref="GI:325292404" /db_xref="GeneID:10266724" /translation="MCAGFNHRMRPKHEPARRQELCMFKGSIPALITPFTDNGAVDEQ AFAAHVEWQIAEGSNGLVPVGTTGESPTLSHDEHKRVVELCIEVAAKRVPVIAGAGSN NTDEAIELALHAQDAGADALLVVTPYYNKPTQKGLFAHFSAVAEAVKLPIVIYNIPPR SVVDMSPETMGALVKAHKNIVGVKDATGKLDRVSEQRISCGKDFIQLSGEDGTALGFN AHGGVGCISVSANVAPRLCSEFQAAMLAGDYAKALEYQDRLMPLHRAIFMEPGVCGTK YALSKTRGGNRKVRSPLMSTLEPATEAAIDAALKHAGLMN" misc_feature 967046..967927 /gene="dapA" /locus_tag="AGROH133_05014" /note="Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329" /db_xref="CDD:30677" misc_feature 967049..967906 /gene="dapA" /locus_tag="AGROH133_05014" /note="Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950" /db_xref="CDD:188637" misc_feature order(967172..967186,967283..967285,967289..967291, 967358..967366,967451..967453,967457..967459, 967790..967795,967847..967849,967853..967855) /gene="dapA" /locus_tag="AGROH133_05014" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188637" misc_feature order(967175..967180,967442..967444,967457..967459, 967529..967531,967604..967606,967610..967612) /gene="dapA" /locus_tag="AGROH133_05014" /note="active site" /db_xref="CDD:188637" misc_feature 967529..967531 /gene="dapA" /locus_tag="AGROH133_05014" /note="catalytic residue [active]" /db_xref="CDD:188637" gene 968094..968576 /gene="smpB" /locus_tag="AGROH133_05015" /db_xref="GeneID:10266725" CDS 968094..968576 /gene="smpB" /locus_tag="AGROH133_05015" /note="binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; tmRNA-binding protein" /codon_start=1 /transl_table=11 /product="SsrA-binding protein" /protein_id="YP_004278269.1" /db_xref="GI:325292405" /db_xref="GeneID:10266725" /translation="MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKAL REGKANIAESYASDEGDEIWLINSHLPEYLQANRFNHEPRRRRKLLLNKREINRLRAG INREGMTLVPLKVYFNEKGRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNNA " misc_feature 968142..968447 /gene="smpB" /locus_tag="AGROH133_05015" /note="Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294" /db_xref="CDD:187755" misc_feature order(968184..968201,968205..968210,968214..968219, 968226..968228,968277..968279,968361..968378) /gene="smpB" /locus_tag="AGROH133_05015" /note="SmpB-tmRNA interface; other site" /db_xref="CDD:187755" gene complement(968736..970235) /gene="mcpV2" /locus_tag="AGROH133_05016" /db_xref="GeneID:10266726" CDS complement(968736..970235) /gene="mcpV2" /locus_tag="AGROH133_05016" /note="methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004278270.1" /db_xref="GI:325292406" /db_xref="GeneID:10266726" /translation="MHGQVKTNQQLDERLNFLGLGQEQRQNLSDMKGVITGSLDASLD RFYAKARSVPETAKFFASDAHVQHAKGMQMKHWARIASGAFNSDYTDAVTAIGRTHAR LGLEPRWYIGGYALMLDGIVKAVVNSELKGLFQEKKAKKLNDALTVTIKAALLDMDYS ISVYLDVLAAERLKVEEQQAQMKREQEHVLELLNNALNKLANGDLTSSINEKTAPQFE GLIANFNAAVGNLAGAFSQIVEEANKISGNTRELTSATDDMARRTEQQAAALEETAAA VEEITTISKLSAQRSEEAKAIVESSAAEAARSRDVVTEAVKAMGAIEESSQKITQIIS VIDEISFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSANAAKEIKTLITKS SEDVMQGVSLVNKTGQSLNTIGNKVDHIQEHITSLTKAAQEQSVGIQEISAAINSMDN LTQKNAAMVEETNAATHNLSDVSANLAALVSRFSVSASTSYVERTYRAA" misc_feature complement(969750..970208) /gene="mcpV2" /locus_tag="AGROH133_05016" /note="Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are...; Region: sensor_globin; cd01068" /db_xref="CDD:29981" misc_feature complement(order(969894..969896,969906..969908, 969921..969923,969927..969929,969936..969938, 969948..969950,970008..970010,970017..970022, 970029..970034,970044..970046,970056..970061, 970068..970070,970095..970100)) /gene="mcpV2" /locus_tag="AGROH133_05016" /note="heme-binding site [chemical binding]; other site" /db_xref="CDD:29981" misc_feature complement(968781..969305) /gene="mcpV2" /locus_tag="AGROH133_05016" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(970460..971029) /locus_tag="AGROH133_05017" /db_xref="GeneID:10266727" CDS complement(970460..971029) /locus_tag="AGROH133_05017" /note="Protein of unknown function DUF88; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278271.1" /db_xref="GI:325292407" /db_xref="GeneID:10266727" /translation="MFDPREKIALFIDGANLYAASKSLGFDIDYRKLLKAFQKRGYLL RAYYYTALIEDQEYSSIRPLIDWLDYNGYKVVTKPAKEFTDALGRRKIKGNMDIELAV DAMEQSETVDHLVLFSGDGDFTKLVDALQRKGRKVSVVSTMATQPAMIADDLRRQADH FIDLMTLKAEIGRDPNERPARHVESPETI" misc_feature complement(970478..971029) /locus_tag="AGROH133_05017" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1432" /db_xref="CDD:31621" misc_feature complement(970538..971014) /locus_tag="AGROH133_05017" /note="LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback...; Region: LabA_like; cd06167" /db_xref="CDD:100118" misc_feature complement(order(970664..970666,970670..970672, 970676..970678,970739..970741,970982..970984, 970991..970993)) /locus_tag="AGROH133_05017" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:100118" gene 971421..971813 /gene="rnpO" /locus_tag="AGROH133_05018" /db_xref="GeneID:10266728" CDS 971421..971813 /gene="rnpO" /locus_tag="AGROH133_05018" /EC_number="2.7.7.6" /note="Promotes RNA polymerase assembly. Latches the N-and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas; DNA-directed RNA polymerase, subunit K/omega" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit omega" /protein_id="YP_004278272.1" /db_xref="GI:325292408" /db_xref="GeneID:10266728" /translation="MARVTVEDCIDKVDNRFELVLLASHRARQISQGSSITVDRDNDK NPVVALREIADEMLSPDDLKEDLIHSLQKHVEVDEPEPDPVTLAASATADGEEDDQPE TVTFDQMSEEELLAGIEGLVPPEKNDDY" misc_feature 971421..971627 /gene="rnpO" /locus_tag="AGROH133_05018" /note="RNA polymerase Rpb6; Region: RNA_pol_Rpb6; cl14651" /db_xref="CDD:189264" gene 971889..974180 /locus_tag="AGROH133_05019" /db_xref="GeneID:10266729" CDS 971889..974180 /locus_tag="AGROH133_05019" /EC_number="3.1.7.2" /note="Guanosine polyphosphate pyrophosphohydrolases/synthetases" /codon_start=1 /transl_table=11 /product="GTP pyrophosphohydrolase/synthetase" /protein_id="YP_004278273.1" /db_xref="GI:325292409" /db_xref="GeneID:10266729" /translation="MQHCAPTPRLARFLFVEYRMMRQYELVERVQKYKPDANEALLNK AYVYAMQKHGQQKRANGDPYISHPLEVAAILTEMHLDESTIAVALLHDTIEDTTATRA EIDELFGEDIGRLVEGLTKLKKLDLVTRKAKQAENLRKLLLAISDDVRVLLVKLADRL HNMRTMEYMPADKRSRISEETMEIYAPLAGRMGMQDMRDELEDLSFRYLNPEAYETVT NRLQELETRNEGLIKKIEDELRELLVANGLLGASVKGRQKKPYSVFRKMQSKSLSFEQ LSDVYGFRILVDDIPSCYRALGIVHTRWRVVSGRFKDYISTPKQNDYRSIHTTIVGPS RQRIELQLRTKRMSEIAEFGIAAHALYKDGENGEGDLLSPESNAYSWLRHTIESLAEG DSPEEFLEHTKLELFQDQVFCFTPKGKLIALPRGATPIDFAYAVHTNIGDTTVGAKIN GRIMPLVTRLNNGDEVEIIRSGVQVPPAAWEEVVVTGKARSAIRRATRMAIRKQYSGL GYRILERTFERAGKAFSRDALKPVLHRLAQKDVEDAIAAVGRGEVSSLDVLRAVYPDY QDERVTVKMTGDDGWFNMRSASGMVFKIPGKSRSVLEDDGAAEMLDGPDPLPIRGLSG NVDVHFGAAGAVPGDRIVGIMEKGKGITIYPIQAPALQRFDDEPERWIDVRWDLDEAN KSRFMARVMINALNEPGTLASVAQSIATLDVNIRALNMVRIGTDFSELALDVEVWDLR QLNQLLSQLKDLDCVSTVKRAFD" misc_feature 971943..974168 /locus_tag="AGROH133_05019" /note="Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]; Region: SpoT; COG0317" /db_xref="CDD:30665" misc_feature 972078..972377 /locus_tag="AGROH133_05019" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature 972585..972947 /locus_tag="AGROH133_05019" /note="Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399" /db_xref="CDD:143389" misc_feature order(972654..972656,972660..972662,972723..972728, 972738..972740,972822..972824,972828..972830, 972843..972845,972849..972851,972855..972857, 972867..972869,972903..972905,972909..972911, 972915..972917,972939..972944) /locus_tag="AGROH133_05019" /note="synthetase active site [active]" /db_xref="CDD:143389" misc_feature order(972654..972656,972822..972824,972828..972830, 972843..972845,972849..972851,972855..972857, 972867..972869,972903..972905,972909..972911, 972939..972941) /locus_tag="AGROH133_05019" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143389" misc_feature order(972723..972725,972903..972905) /locus_tag="AGROH133_05019" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143389" misc_feature 973119..973295 /locus_tag="AGROH133_05019" /note="TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named...; Region: TGS_RelA_SpoT; cd01668" /db_xref="CDD:133438" misc_feature 973962..974168 /locus_tag="AGROH133_05019" /note="ACT domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876" /db_xref="CDD:153148" gene 974338..974523 /locus_tag="AGROH133_05020" /db_xref="GeneID:10266730" CDS 974338..974523 /locus_tag="AGROH133_05020" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278274.1" /db_xref="GI:325292410" /db_xref="GeneID:10266730" /translation="MRNAISKLKGHEIMFTPLRKIARAVRGKTTQEREFEYLSGSVSN VDLEFRQREIDRGLFRR" gene 974970..975548 /locus_tag="AGROH133_05021" /db_xref="GeneID:10266731" CDS 974970..975548 /locus_tag="AGROH133_05021" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278275.1" /db_xref="GI:325292411" /db_xref="GeneID:10266731" /translation="MPFRRREPVGFSEKIRDLFWPRTGFTRSLRYMKLRLLRLSASPH SIAAGVALGIGVAWTPFLGVHIIIAMALGFLMRVNLVAAALGTTFANPLTFPFIWAST WELGHFLLGRQKEAGVAHVDFVALFSHLEFRQIWRPVLEPMTVGALLPAAVSAVIAYI TVYSLISGFQRRKMENLAHRAANKNASLEMLK" misc_feature 974970..975524 /locus_tag="AGROH133_05021" /note="Uncharacterized protein conserved in bacteria (DUF2062); Region: DUF2062; cl01261" /db_xref="CDD:194087" gene 975545..975949 /gene="acpS" /locus_tag="AGROH133_05025" /db_xref="GeneID:10266732" CDS 975545..975949 /gene="acpS" /locus_tag="AGROH133_05025" /EC_number="2.7.8.7" /note="Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; Phosphopantetheinyl transferase (holo-ACP synthase)" /codon_start=1 /transl_table=11 /product="holo-acyl-carrier protein synthase" /protein_id="YP_004278276.1" /db_xref="GI:325292412" /db_xref="GeneID:10266732" /translation="MILGLGSDLIDIRRVEHSLTRFGERFTHRCFTDIERAKSDGRKN RAASYAKRFAAKEACSKALGTGLANGVFWKDMGVVNLPGGKPTMALTNGAAERLAAML PAGHRANIHLTITDDYPYAQAFVIIEALPVSD" misc_feature 975545..975934 /gene="acpS" /locus_tag="AGROH133_05025" /note="4'-phosphopantetheinyl transferase superfamily; Region: ACPS; cl00500" /db_xref="CDD:193842" gene 976161..976907 /gene="sigF" /locus_tag="AGROH133_05026" /db_xref="GeneID:10266733" CDS 976161..976907 /gene="sigF" /locus_tag="AGROH133_05026" /EC_number="3.4.21.89" /note="Peptidase S24, S26A, S26B and S26C; Signal peptidase I" /codon_start=1 /transl_table=11 /product="type I signal peptidase" /protein_id="YP_004278277.1" /db_xref="GI:325292413" /db_xref="GeneID:10266733" /translation="MSEKAEKKQNALWENVKVIIQALLLAMVIRTVLFQPFTIPSGSM MPTLLVGDYLFVNKFSYGYSKYSLPFSPNLFSGRILEFSKPKRGDVVVFRLPPNPEVD YIKRLVGLPGDRIQVTNGVLFINGQPVPKQPDGTFTSDYRADPGANVPVFRETLDNGV TFDTLDQSPDSRGDNTREFLVPEGHYFMMGDNRDNSLDSRFDVGFVPEENLIGRASVI FFSLGNDTPFSRIWDWPSNMRWDRLFKVVG" misc_feature 976203..976829 /gene="sigF" /locus_tag="AGROH133_05026" /note="signal peptidase I, bacterial type; Region: sigpep_I_bact; TIGR02227" /db_xref="CDD:188205" misc_feature 976263..>976490 /gene="sigF" /locus_tag="AGROH133_05026" /note="The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530" /db_xref="CDD:119398" misc_feature order(976287..976289,976473..976475) /gene="sigF" /locus_tag="AGROH133_05026" /note="Catalytic site [active]" /db_xref="CDD:119398" misc_feature <976716..976805 /gene="sigF" /locus_tag="AGROH133_05026" /note="The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530" /db_xref="CDD:119398" gene 976904..977617 /gene="rnc" /locus_tag="AGROH133_05028" /db_xref="GeneID:10266734" CDS 976904..977617 /gene="rnc" /locus_tag="AGROH133_05028" /EC_number="3.1.26.3" /note="cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; dsRNA-specific ribonuclease" /codon_start=1 /transl_table=11 /product="ribonuclease III" /protein_id="YP_004278278.1" /db_xref="GI:325292414" /db_xref="GeneID:10266734" /translation="MSKTKPLSIAEISRLEALIGYEFKEKARLDRALTHASARSAAAG NYERLEFLGDRVLGLCVAELLFSTFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNF IRTGSDVKKLTGKAMLNVRADVVESLIATLYLDGGLEASRKFILKYWQGRATRVDAGR RDAKTELQEWAHARFAVTPAYRVDDRSGPDHDPSFTVTVEIPGVKPETGVERSKRAAE QVAATRLLEREGVWQKSST" misc_feature 976904..977608 /gene="rnc" /locus_tag="AGROH133_05028" /note="ribonuclease III; Reviewed; Region: PRK12371" /db_xref="CDD:171444" misc_feature 976988..977374 /gene="rnc" /locus_tag="AGROH133_05028" /note="RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-...; Region: RIBOc; cd00593" /db_xref="CDD:29697" misc_feature order(977042..977047,977054..977059,977066..977068, 977075..977080,977087..977092,977096..977104, 977132..977134,977300..977302,977327..977329) /gene="rnc" /locus_tag="AGROH133_05028" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29697" misc_feature order(977042..977044,977051..977053,977063..977065, 977270..977272,977279..977281) /gene="rnc" /locus_tag="AGROH133_05028" /note="active site" /db_xref="CDD:29697" misc_feature order(977051..977053,977270..977272,977279..977281) /gene="rnc" /locus_tag="AGROH133_05028" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29697" misc_feature 977387..977584 /gene="rnc" /locus_tag="AGROH133_05028" /note="Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase...; Region: DSRM; cd00048" /db_xref="CDD:28930" misc_feature order(977387..977389,977405..977410,977537..977548, 977555..977557) /gene="rnc" /locus_tag="AGROH133_05028" /note="dsRNA binding site [nucleotide binding]; other site" /db_xref="CDD:28930" gene 977701..978651 /gene="era" /locus_tag="AGROH133_05029" /db_xref="GeneID:10266735" CDS 977701..978651 /gene="era" /locus_tag="AGROH133_05029" /note="Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTPase" /codon_start=1 /transl_table=11 /product="GTP-binding protein Era" /protein_id="YP_004278279.1" /db_xref="GI:325292415" /db_xref="GeneID:10266735" /translation="MDIMTDHENPAVAGEDIALPTRSGFVALIGPTNAGKSTLVNRLV GAKVSIVSHKVQTTRAVMRGIAIHKNAQIVFMDTPGIFKPRRRLDRAMVTSAWGGAKD ADLILLLIDSERGLKGDAEAILEGLKDVPQKKILCLNKIDQVKREDLLKLAAAANEHV TFDRTFMISATNGSGCEDLMDYLVDTLPEGPWYYPEDQISDLPMRQLAAEITREKLFL RLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIALGKNGDAIKAISTASR KELSEILEQPVHLFLFVKVRENWGDDPERFREMGLEFPRG" misc_feature 977758..978633 /gene="era" /locus_tag="AGROH133_05029" /note="GTPase Era; Reviewed; Region: era; PRK00089" /db_xref="CDD:178854" misc_feature 977761..978261 /gene="era" /locus_tag="AGROH133_05029" /note="Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit...; Region: Era; cd04163" /db_xref="CDD:133363" misc_feature 977788..977811 /gene="era" /locus_tag="AGROH133_05029" /note="G1 box; other site" /db_xref="CDD:133363" misc_feature order(977794..977814,977854..977856,977866..977874, 977938..977940,978115..978120,978124..978126, 978205..978210) /gene="era" /locus_tag="AGROH133_05029" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133363" misc_feature order(977833..977835,977839..977883) /gene="era" /locus_tag="AGROH133_05029" /note="Switch I region; other site" /db_xref="CDD:133363" misc_feature 977872..977874 /gene="era" /locus_tag="AGROH133_05029" /note="G2 box; other site" /db_xref="CDD:133363" misc_feature order(977926..977943,978001..978006) /gene="era" /locus_tag="AGROH133_05029" /note="Switch II region; other site" /db_xref="CDD:133363" misc_feature 977929..977940 /gene="era" /locus_tag="AGROH133_05029" /note="G3 box; other site" /db_xref="CDD:133363" misc_feature 978115..978126 /gene="era" /locus_tag="AGROH133_05029" /note="G4 box; other site" /db_xref="CDD:133363" misc_feature 978205..978213 /gene="era" /locus_tag="AGROH133_05029" /note="G5 box; other site" /db_xref="CDD:133363" misc_feature 978439..>978555 /gene="era" /locus_tag="AGROH133_05029" /note="K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains...; Region: KH-I; cl00098" /db_xref="CDD:193658" gene 978834..979586 /gene="fixK" /locus_tag="AGROH133_05030" /db_xref="GeneID:10266736" CDS 978834..979586 /gene="fixK" /locus_tag="AGROH133_05030" /note="Cyclic nucleotide-binding domain; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases" /codon_start=1 /transl_table=11 /product="nitrogen fixation regulatory protein" /protein_id="YP_004278280.1" /db_xref="GI:325292416" /db_xref="GeneID:10266736" /translation="MSPKKPNGISTTPCQHCPLRDLPHFRDFSSSELDFVSRFKTGEL AVESGSVILMEGSHSAHLYTVLQGWAFRYKTLEDGRRQILNYVMPGDLVGLQGTVMGE MQHSVEALSPVTLCVFERSRLNNLFTDHPTLAYDLTWIAASEERMLDNHLLSIGRRTA IERAAYLIAFLYSKAKAVNLVQGETPIPVTQQHVADTLGLSIVHTNKTLRKLVDRGLI RWTDKGCLVLDDAGLSHVAGWQNDEKRPRPFI" misc_feature 978888..979523 /gene="fixK" /locus_tag="AGROH133_05030" /note="cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:31008" misc_feature 978906..979244 /gene="fixK" /locus_tag="AGROH133_05030" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature order(979113..979118,979140..979148) /gene="fixK" /locus_tag="AGROH133_05030" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature order(979206..979214,979224..979232) /gene="fixK" /locus_tag="AGROH133_05030" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature 979311..979523 /gene="fixK" /locus_tag="AGROH133_05030" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 979320..979325 /gene="fixK" /locus_tag="AGROH133_05030" /note="putative switch regulator; other site" /db_xref="CDD:28976" misc_feature order(979395..979397,979401..979409,979434..979436) /gene="fixK" /locus_tag="AGROH133_05030" /note="non-specific DNA interactions [nucleotide binding]; other site" /db_xref="CDD:28976" misc_feature 979434..979454 /gene="fixK" /locus_tag="AGROH133_05030" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:28976" misc_feature order(979437..979442,979452..979454) /gene="fixK" /locus_tag="AGROH133_05030" /note="sequence specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28976" misc_feature 979437..979442 /gene="fixK" /locus_tag="AGROH133_05030" /note="putative cAMP binding site [chemical binding]; other site" /db_xref="CDD:28976" gene 979648..980100 /locus_tag="AGROH133_05032" /db_xref="GeneID:10266737" CDS 979648..980100 /locus_tag="AGROH133_05032" /note="CheY-like; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004278281.1" /db_xref="GI:325292417" /db_xref="GeneID:10266737" /translation="MALENHIGDSGANPSGSLHVERRRNMVPQRCIIVEDEYLVALDV EAVLQSIGVETITIATTLAQAQDALGRDGADCVLLDVSLSDGKSYDFARHLRDHGIPF GFVSGYGDTSGFPEDLVHAPLLGKPFGENEIADFVTTLVAAARDTVKE" misc_feature 979720..980082 /locus_tag="AGROH133_05032" /note="FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784" /db_xref="CDD:31127" misc_feature 979741..980070 /locus_tag="AGROH133_05032" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(979750..979755,979885..979887,979909..979911, 979963..979965,980023..980028) /locus_tag="AGROH133_05032" /note="active site" /db_xref="CDD:29071" misc_feature 979885..979887 /locus_tag="AGROH133_05032" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(979894..979899,979903..979911) /locus_tag="AGROH133_05032" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 980023..980031 /locus_tag="AGROH133_05032" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 980157..980921 /gene="recO" /locus_tag="AGROH133_05033" /db_xref="GeneID:10266738" CDS 980157..980921 /gene="recO" /locus_tag="AGROH133_05033" /note="involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; Recombinational DNA repair protein (RecF pathway)" /codon_start=1 /transl_table=11 /product="DNA repair protein RecO" /protein_id="YP_004278282.1" /db_xref="GI:325292418" /db_xref="GeneID:10266738" /translation="MQWQDEAIILGVKRHGETSVIAEVMTRLRGRHLGMVRGGRSRSM QPVLQAGNRVDVIWRARLDDHLGEFRIEPLQLRAAQLMETATAVYGVQAMGALLRLLP ERDPHPHLYQALDVILDNLHDPVDAGELFVRFELAVLNDLGFGLDLTECAATGLRTDL IYVSPKTGRAVCSTAGAPYAERMLSLPAFLGEGQSKAADRDSLAAAFRLTGHFLHRHV YDPRGLNENAARDGFVQAALKALERKAVLPALDKAV" misc_feature 980157..980822 /gene="recO" /locus_tag="AGROH133_05033" /note="DNA repair protein RecO; Reviewed; Region: recO; PRK00085" /db_xref="CDD:178852" misc_feature 980160..980387 /gene="recO" /locus_tag="AGROH133_05033" /note="Recombination protein O N terminal; Region: RecO_N; pfam11967" /db_xref="CDD:152402" misc_feature 980400..980825 /gene="recO" /locus_tag="AGROH133_05033" /note="Recombination protein O C terminal; Region: RecO_C; pfam02565" /db_xref="CDD:145610" gene complement(980924..982138) /locus_tag="AGROH133_05034" /db_xref="GeneID:10266739" CDS complement(980924..982138) /locus_tag="AGROH133_05034" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004278283.1" /db_xref="GI:325292419" /db_xref="GeneID:10266739" /translation="MSQATRQTMPWAIIVAGSLIAVMTFGPRSAMGFFQLPMLADTGW DRSTFGLAMAFQNLFWGLGQPFFGAIADKFGTGRVLVLSGFLYAAGLICMSFGTSPFW LHFGGGVLVGLGIAAGSFSVILSAFARHVTPQQRSLAFGIGTAAGSAGMFLFAPISQG LISTYGWSDSLVWLAVMMMLVPLLAYPMRGNSSSGSQSQTQFKQTAGEALREALGHKS YLLLTTGFFVCGFQVAFITAHFPAYLGDIGIEPRYAVIAMALIGFFNIIGSLAAGVIA QRYSKPYLLAYIYIARSIAVTAFLLLPQTPLSVIIFAAVMGILWLSTVPPTNALVAIM FGTRHLGMLGGVVFLSHQIGSFLGVWLGGFLYDKLGSYDLVWWLGVGMGIFAAIVHWP IQERPAPRPAMA" misc_feature complement(980972..982099) /locus_tag="AGROH133_05034" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(981065..982084) /locus_tag="AGROH133_05034" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature complement(order(981074..981076,981083..981088, 981095..981100,981107..981112,981143..981145, 981152..981157,981167..981169,981176..981181, 981188..981190,981332..981334,981344..981346, 981353..981355,981365..981367,981377..981379, 981416..981418,981425..981430,981437..981442, 981449..981451,981686..981688,981704..981709, 981716..981721,981755..981757,981764..981769, 981776..981781,981794..981799,981935..981940, 981944..981949,981959..981961,981968..981973, 981980..981982,982031..982036,982040..982048, 982055..982057)) /locus_tag="AGROH133_05034" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 982315..983049 /locus_tag="AGROH133_05047" /db_xref="GeneID:10266740" CDS 982315..983049 /locus_tag="AGROH133_05047" /EC_number="2.1.1.-" /note="methyltransferase type 11; SAM-dependent methyltransferases" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_004278284.1" /db_xref="GI:325292420" /db_xref="GeneID:10266740" /translation="MKQNIYDDPQFFERYSAMPRSLEGLRQAGEWHELRAMLPALKDK TVLDLGCGFGWHCRHAVEQGAAHVVGVDLSENMLRRAAEINGGPGIEYRRAAIEDIDF APESFDLVLSSLALHYVRDLDAAFARVFSVLKSGGDFVFSIEHPVFTALDKQDWFYGE DGEILHWPLDNYQNEGVRHSNWMADDVVKYHRTVSGILNALLTSGFAITRLAEPRPDP ALLAERPEMKQEDRRPIFLIVGANKP" misc_feature 982354..982986 /locus_tag="AGROH133_05047" /note="SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: SmtA; COG0500" /db_xref="CDD:30846" misc_feature 982447..982749 /locus_tag="AGROH133_05047" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(982459..982479,982528..982533,982597..982605, 982651..982653) /locus_tag="AGROH133_05047" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(983081..983923) /locus_tag="AGROH133_05048" /db_xref="GeneID:10266741" CDS complement(983081..983923) /locus_tag="AGROH133_05048" /note="Pyruvate kinase, beta-barrel-like, MOSC domain; Uncharacterized Fe-S protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278285.1" /db_xref="GI:325292421" /db_xref="GeneID:10266741" /translation="MRVTELNIYPLKSARGIVLSKSDVSAEGLPGDRRAMLTDPSGHF ITQRELPDIATVLAQHADGGMVLSREAGGEIFARPSGQRMDVAVWKSIVSANIADSET NDTLSEWLGREVKLVFFDDIAKRIASLEWTGNETPVTFADGYQILVTTTASLAALNDN MRANGEDAVGMERFRPNIVLETDEPWAEDRWAAIEIGGIRFDLVKPCARCIMTTQDQI TGSRDVPSPMKAMGRIRMSGDRRVPGPLFGWNVTPRGEGRLAVGDVAKVVEERPDGWA IKRR" misc_feature complement(983096..983923) /locus_tag="AGROH133_05048" /note="Uncharacterized Fe-S protein [General function prediction only]; Region: COG3217" /db_xref="CDD:33030" misc_feature complement(983585..983923) /locus_tag="AGROH133_05048" /note="MOSC N-terminal beta barrel domain; Region: MOSC_N; pfam03476" /db_xref="CDD:146229" misc_feature complement(983123..983518) /locus_tag="AGROH133_05048" /note="MOSC domain; Region: MOSC; pfam03473" /db_xref="CDD:146227" gene complement(983934..984578) /locus_tag="AGROH133_05049" /db_xref="GeneID:10266742" CDS complement(983934..984578) /locus_tag="AGROH133_05049" /note="Metal-dependent phosphohydrolase, HD region; Predicted HD superfamily hydrolase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278286.1" /db_xref="GI:325292422" /db_xref="GeneID:10266742" /translation="MIPAEAFAPYAALAQDLIPHAADAGDGSHDLAHIHRVFRNAMRI HAGEGGDGTVLAASVLLHDCVAVEKNSPLRAQASRLAAEKASGILAGLGWRQADIDAA AHAITTHSFSANIEPQTLEAKILQDADRLDAIGMVGAARCFYIAGRMGSALYDPADPL AKDRPLDDRAFAIDHFETKLFKLADGFRTETGRELAKDRHERLKQVLDLFLDEI" misc_feature complement(983988..984503) /locus_tag="AGROH133_05049" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(984575..987346) /locus_tag="AGROH133_05050" /db_xref="GeneID:10266743" CDS complement(984575..987346) /locus_tag="AGROH133_05050" /note="Uncharacterised conserved protein UCP035905, membrane protein; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278287.1" /db_xref="GI:325292423" /db_xref="GeneID:10266743" /translation="MEIPFLILAVIAAFIYTLVASIRNSSRIKSLERELNGLKRLMAT GAASPLAAQAEADAAAENPDFRAEEEDRALPEEEFVETEYPSETEMAAAMAPAENLAS AEETSALSTEAASASAPKESFESLLGARWAVWAGGLALALGGIFLIKYSIESGLLSPA VRLSLAAIFGLGLGLAGEAIRRRAVPGIATTYSNAMIPGVLTAAGVLTLFGVIYAAYG IYDYISPTTAFILLGLVAFATIGLSLLHGQALAGLGLLGSMLTPALISTETPNIWALF VFLTISWLATAAAARRQRWTVAPSLANAGLGLWALGYIAIADTISAAPPVLALLVMLA GTIFLWPGRYFDAAPAETGETVTSGRRAVRAMRLLLRPSLAINLTVSMAVILPAFSFL VIGAGIDLHPAVIVSALIAGLAALGASRRNAVWPAIIAALGAQAAVSVMSRSGLDFIG IINDTSIALPPVRTGYMAEIAMALGLGAILLLCGFSFLKRKGADDPDFAQLWAGIAAL FPVWLGTASFVEYGNLGRDWLHAAYGLGLGFLLIAAAEWLHRQNNEAYRKPLNILVLG SFAAFALSLHTLTEGLTTTILLSVIGFGYVLATRQRNWDVLPWVMAVASVAVLGRIAW EPTIVGPQNLGLTPVFNALLPGYGIPALLAIVSAWMLRDWPGFRAKNFLQAIASLMGL LAVAILIRHAMNGGTLDESVPTLGEQSIYTLLTIGFSGVLMTLDLKSPSPVFRYGSMI AGVIAVINVLVMHFFTLNPYFTGENTGRIPFLNLLLIGYLLPALAYGGLAYYARGKRP AAYVSLLAVAGAALGFAWATLSVRRFWQGENIANWKGFLQGETYSYSVVWLLIGVLLL IVGSRFNARSLRLASAAFVLISVAKAFLIDMSNLEGVLRALSFIGLGAVLIGIGLFYQ KILTRQPKT" misc_feature complement(984581..986914) /locus_tag="AGROH133_05050" /note="Predicted membrane protein [Function unknown]; Region: COG5373" /db_xref="CDD:34937" gene complement(987588..989141) /locus_tag="AGROH133_05078" /db_xref="GeneID:10266744" CDS complement(987588..989141) /locus_tag="AGROH133_05078" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278288.1" /db_xref="GI:325292424" /db_xref="GeneID:10266744" /translation="MNSALGIHHITMITRKVQANVDFYAGFLGLRLVKRTAGFEDAMQ LHLLYGDGNASPGSLLTFLVWEDGGQGRVGYGQTLEVSLAIDPASIGFWLTRALKFGI RAEGPSDEFGTPVIRLKDPDGLIVKLVGTNAFADATPHVTNDIPAEDAIRRIYGATML SEVPEETVAFLTRYFGYRQESQTGAIRRLVSQSGDIIDVRDATGFWSSAPGTGTVDHI AFRAKDLEELNAVLAELKSLNSSTTNAHDRKYFHSLYVREPGGVLIEMATDAPGMTVD EPLEALGENLFIPPLFMKDEADVRVALPQFSMPGEERIVYRDLPFVHRFYTPEKPDGS TIILLHGSGGSETSLMPLAHRAAPGATLLGVRGRSTEEDIARWFRRLPDFSFDQKDIV SEAEAFAAFIDGAIRSYGLDRSKLRFIGHSNGANFYAAFAALYPELAGDALLYRPLPI LDRWPESDLTERNFLLVAGERDKYRDRAADVQGRLVAGGARAEVQMIDDGHDLGFADI EAARHWLAA" misc_feature complement(988755..989126) /locus_tag="AGROH133_05078" /note="N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins; Region: PcpA_N_like; cd08346" /db_xref="CDD:176694" misc_feature complement(order(989109..989111,989115..989117)) /locus_tag="AGROH133_05078" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:176694" misc_feature complement(988224..988685) /locus_tag="AGROH133_05078" /note="C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins; Region: PcpA_C_like; cd08347" /db_xref="CDD:176695" misc_feature complement(order(988347..988349,988491..988493)) /locus_tag="AGROH133_05078" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:176695" misc_feature complement(987594..988196) /locus_tag="AGROH133_05078" /note="Predicted esterase [General function prediction only]; Region: COG0400" /db_xref="CDD:30749" gene 989434..990477 /locus_tag="AGROH133_05079" /db_xref="GeneID:10266745" CDS 989434..990477 /locus_tag="AGROH133_05079" /note="NMT1/THI5 like; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="ABC transporter periplasmic protein" /protein_id="YP_004278289.1" /db_xref="GI:325292425" /db_xref="GeneID:10266745" /translation="MILTRRLLSRALAIAAVGAAAGLSLPVTSAHAETPVKFTLDWKF EGPAAGFLLALDKGYFKAEGLDVTIDSGNGSVEAIPRVATGAYQMGFGDINSVIKFLD EDPSQKVKAVYMVYERPTFAVVGRKSLGVTGDPKSLEGKKLGAPPPDGAFAQWPAFKQ VAGLDDSKIKIESIGFPVREPMLAKGDVDGVFGFAFSVILNLKKQGIADNDISTILMA EHGLNLYGNAVLVNTDFAEKNPDAVKGFLKALAKGFADSVKAPEEGVAAVLKRNETLD SAIELERLNMANSMNIKTPYVVENGMGGVDPARLAASLEILKVSMGLKGNVKAEQVFD AAYLPPKEERMLP" misc_feature 989518..990450 /locus_tag="AGROH133_05079" /note="ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]; Region: TauA; COG0715" /db_xref="CDD:31059" misc_feature 989578..990222 /locus_tag="AGROH133_05079" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 990566..991354 /locus_tag="AGROH133_05082" /db_xref="GeneID:10266746" CDS 990566..991354 /locus_tag="AGROH133_05082" /note="ABC transporter related; ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004278290.1" /db_xref="GI:325292426" /db_xref="GeneID:10266746" /translation="MSHLVEIDNVDMRYGGAAGTLAVSGLNLTVAKGEFAAVVGPSGC GKSTLMKLVTGLHIPQKGNVIVAGRQVTEPVSIVGMAFQNPTMLPWRTTLENILLPLE IVEKHRRRLRAHKAEYVAKAERLLEIVGLKGFGSKFPWQLSGGMQQRANLCRALIHEP DLLMLDEPFGALDAFTREELWCVIRDLHTAQRVTIILVTHDLREATFLADKIFVMSAR PGRVLAEHRVPFARPRQLDIMYDKGFNDMVQELHGEIAQARVAA" misc_feature 990572..991351 /locus_tag="AGROH133_05082" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116" /db_xref="CDD:31313" misc_feature 990578..991255 /locus_tag="AGROH133_05082" /note="NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars...; Region: ABC_NrtD_SsuB_transporters; cd03293" /db_xref="CDD:73052" misc_feature 990683..990706 /locus_tag="AGROH133_05082" /note="Walker A/P-loop; other site" /db_xref="CDD:73052" misc_feature order(990692..990697,990701..990709,990812..990814, 991061..991066,991163..991165) /locus_tag="AGROH133_05082" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73052" misc_feature 990803..990814 /locus_tag="AGROH133_05082" /note="Q-loop/lid; other site" /db_xref="CDD:73052" misc_feature 990989..991018 /locus_tag="AGROH133_05082" /note="ABC transporter signature motif; other site" /db_xref="CDD:73052" misc_feature 991049..991066 /locus_tag="AGROH133_05082" /note="Walker B; other site" /db_xref="CDD:73052" misc_feature 991073..991084 /locus_tag="AGROH133_05082" /note="D-loop; other site" /db_xref="CDD:73052" misc_feature 991151..991171 /locus_tag="AGROH133_05082" /note="H-loop/switch region; other site" /db_xref="CDD:73052" gene 991351..992169 /locus_tag="AGROH133_05083" /db_xref="GeneID:10266747" CDS 991351..992169 /locus_tag="AGROH133_05083" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004278291.1" /db_xref="GI:325292427" /db_xref="GeneID:10266747" /translation="MSAFVESSMATAPSKPLIARVNWVKAAPWLYTLALFAMWELLVY ALKMPPTILPSPVRVGQAIVQYWSPIWKNSLQTLYTTTLGFAIAVAAGLAIGLFIGWS KTIYAGLYPLMIGFNAIPKVALVPILVIWFGIGTVPAVLTAFLISFFPIVVNVATGLA TIEPETEDVLRALGARKMDIMLKVGIPRSMPYFFGSLKIAITLAFVGSVVSETVASNY GLGNMMSSAQSQFNVPLVFAGLLMLAVEGIVMYAIMAWLEKRMTGWAHRSTMGQ" misc_feature 991387..992145 /locus_tag="AGROH133_05083" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600" /db_xref="CDD:30945" misc_feature <991696..992151 /locus_tag="AGROH133_05083" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene complement(992288..992971) /locus_tag="AGROH133_05090" /db_xref="GeneID:10266748" CDS complement(992288..992971) /locus_tag="AGROH133_05090" /note="Calycin, YodA; Predicted periplasmic or secreted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278292.1" /db_xref="GI:325292428" /db_xref="GeneID:10266748" /translation="MQKTITRVTGALAIGSMLLMTAPALAAGKDNTSTAHSHSHDHSH GQTEAEKQIYKGYFEDAQVKPRMLSDWEGDWQSVYPYLLNGSLDGIMAEKAAHGDKTA AEYRAYYEIGYKTDVNRITIKGDNVAFYKEGKPTQGTYVSDGQEILTYKKGNRGVRYI FKKTGGDADAPQFIQFSDHTIAPKKAGHYHLYWGNDRKALLDEVTNWPTYYPFQMDGP EIVEEMAAH" misc_feature complement(992291..992830) /locus_tag="AGROH133_05090" /note="YodA lipocalin-like domain; Region: YodA; cl01365" /db_xref="CDD:186425" gene complement(993172..993993) /locus_tag="AGROH133_05092" /db_xref="GeneID:10266749" CDS complement(993172..993993) /locus_tag="AGROH133_05092" /note="MscS Mechanosensitive ion channel; Small-conductance mechanosensitive channel" /codon_start=1 /transl_table=11 /product="mechanosensitive ion channel" /protein_id="YP_004278293.1" /db_xref="GI:325292429" /db_xref="GeneID:10266749" /translation="MEQQATDIIVASQAAVRQASTLAVQYSFSIIGALLLLIIGWLAA TFLQRWAFQGLSRIRGFDATLAGFFAGAIRYVVLILVLVMVLGQFGVQTASILAALGA AGLAIGLALQGTLQNIAAGIMLLVLRPFRVGEYIETGAVSGTVIEIGLFATELKTSDG LYRLAPNSTLWNVPITNYSRFPSRRHELSLTVMSDEDLAAAQDMLMRVVRSESRVLLD PAPVTFVDSVSADSATVKLRYWARSDNYFATTRDVTKAMKLAFDERKAELTAQTA" misc_feature complement(993190..993777) /locus_tag="AGROH133_05092" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" gene complement(994073..994591) /locus_tag="AGROH133_05096" /db_xref="GeneID:10266750" CDS complement(994073..994591) /locus_tag="AGROH133_05096" /note="Predicted protein tyrosine phosphatase" /codon_start=1 /transl_table=11 /product="tyrosine phosphatase protein" /protein_id="YP_004278294.1" /db_xref="GI:325292430" /db_xref="GeneID:10266750" /translation="MTSIVVSPLSRIAEMAVKHKAREMVTLIAKEQTFHRPAVISAER HLTLAMNDISFKGTGDLIAPDDAHVLQLIDFAREWDQSAPLLIHCWMGVSRSPAAAVI AALSLYPDQDEMALALSLRTASPYATPNARIIAIGDRLLGRDGRLVAAIKTIGRGADT DGNVPFVLPLSN" misc_feature complement(994109..994591) /locus_tag="AGROH133_05096" /note="Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (; Region: PTPc; cl00053" /db_xref="CDD:193631" gene complement(994588..995223) /locus_tag="AGROH133_05097" /db_xref="GeneID:10266751" CDS complement(994588..995223) /locus_tag="AGROH133_05097" /note="Predicted hydrolases of HD superfamily" /codon_start=1 /transl_table=11 /product="hydrolase protein" /protein_id="YP_004278295.1" /db_xref="GI:325292431" /db_xref="GeneID:10266751" /translation="MASAKSPRAWQRMLSGRRLDLLDPSPLDVEIADIAHGLARVARW NGQTRGDHAFSVAQHSLIVENIFCRICANATPDDMQMALLHDAPEYVIGDMISPFKSV VGGGYKTVEKRLEAAVHLRFGLPPHASRGLKDRIKKADTVAAFFEATELAGFSIAEAQ KFFGLPRGITRDMFDIIPLPSTEAQKRFVERFEAIEAMRVVKTGNAAGGVK" misc_feature complement(994627..995139) /locus_tag="AGROH133_05097" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" gene complement(995226..996074) /gene="gcvT" /locus_tag="AGROH133_05098" /db_xref="GeneID:10266752" CDS complement(995226..996074) /gene="gcvT" /locus_tag="AGROH133_05098" /EC_number="2.1.2.10" /note="glycine cleavage T-protein, C-terminal barrel, Aminomethyltransferase folate-binding domain; Predicted aminomethyltransferase related to GcvT" /codon_start=1 /transl_table=11 /product="glycine cleavage system T protein, aminomethyltransferase" /protein_id="YP_004278296.1" /db_xref="GI:325292432" /db_xref="GeneID:10266752" /translation="MPSAFLADRRLIRVSGTGAEEFLNNLITADVENLPQGEARASAL LTPQGKILFDFLIARDGPDYLIESGAAEQDALLRRLTMYKLRAPVDLKAEPIEGVSVF WSESVPEAGAKDGRFAKAGINLFRVPGASASGDITAYDALRIEHGIAESGRDYALQDA FPHDVLMDVNDGVSFKKGCFVGQEVVSRMKHRGTARRRVVTVSAESALPATGTEITVN GKPVGALGTVCGNTGLAIVRTDRVADALASATPLIAENVPVTVALPAWSGISFPVVDP AVQAEE" misc_feature complement(995259..996074) /gene="gcvT" /locus_tag="AGROH133_05098" /note="Predicted aminomethyltransferase related to GcvT [General function prediction only]; Region: COG0354" /db_xref="CDD:30703" misc_feature complement(995463..995666) /gene="gcvT" /locus_tag="AGROH133_05098" /note="folate-binding protein YgfZ; Region: ygfZ_signature; TIGR03317" /db_xref="CDD:163214" misc_feature complement(<995343..995543) /gene="gcvT" /locus_tag="AGROH133_05098" /note="Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669" /db_xref="CDD:192119" gene complement(996265..997032) /locus_tag="AGROH133_05099" /db_xref="GeneID:10266753" CDS complement(996265..997032) /locus_tag="AGROH133_05099" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278297.1" /db_xref="GI:325292433" /db_xref="GeneID:10266753" /translation="MSCLSKGLLRSSAMLSILAALTAGSIGLPSRAFALSELKPAQNT EGEPQAQSGEQPQRPQAPEPDEIEGDSDGIPLPDPLVDRSAGQSTQQPAKPGNTPEKS VVIEHDISKAPEAVRKLRQQIIDAASSGDIEKLRPFIAASDKQFRIDGNDSDDPIAAL KSYSGDPDGLEVLAIIIDLLSTGYAHVDAGTPDEAYVFPYFSGKPLNTLTAPEKVELL RIITAGDLADMQEYGNYSFYRIGISPDGKWKFFTAGD" gene complement(997047..997304) /locus_tag="AGROH133_05102" /db_xref="GeneID:10266754" CDS complement(997047..997304) /locus_tag="AGROH133_05102" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278298.1" /db_xref="GI:325292434" /db_xref="GeneID:10266754" /translation="MQTSRNEIDDMIVHEKMQVALEHQNEAWADGMADGIEPEIIADA AIALAMRETIRMHGEAGAEAMLESLRQRMLEGEFSPQRVIQ" gene complement(997410..997850) /locus_tag="AGROH133_05103" /db_xref="GeneID:10266755" CDS complement(997410..997850) /locus_tag="AGROH133_05103" /note="Conserved hypothetical protein CHP02301; Predicted secreted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278299.1" /db_xref="GI:325292435" /db_xref="GeneID:10266755" /translation="MIRPTIFLSFFLTMLAPAGQDGVAHAQSSKAASSEVRPPEAQPP KPAPYDDRLARLSEILGAVQYLRTLCPSSGPEDWRKSMSDLLAADTANEPERRQRMTA AFNRGYRSFAAIHSSCTRAAVMAEEGYRNEGATLAQEIASRFGN" misc_feature complement(997413..997835) /locus_tag="AGROH133_05103" /note="Protein of unknown function (DUF2385); Region: DUF2385; cl11490" /db_xref="CDD:159492" gene complement(998029..998445) /gene="nudF" /locus_tag="AGROH133_05105" /db_xref="GeneID:10266756" CDS complement(998029..998445) /gene="nudF" /locus_tag="AGROH133_05105" /EC_number="3.6.1.13" /note="NUDIX domain" /codon_start=1 /transl_table=11 /product="ADP-ribose pyrophosphatase" /protein_id="YP_004278300.1" /db_xref="GI:325292436" /db_xref="GeneID:10266756" /translation="MTLRIKPRPASSAIVRNGDRLLLVRRINPPSKDMFAFPGGRGEE GETPAETALRELQEETGIVARKPQLFATYDLPSHDPEGALTSHYFLSVFTVETDADPA VTAADDAADAGWFTLSEIRRLPAPESVVECAERLLA" misc_feature complement(998053..998421) /gene="nudF" /locus_tag="AGROH133_05105" /note="Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_15; cd04673" /db_xref="CDD:72909" misc_feature complement(998260..998328) /gene="nudF" /locus_tag="AGROH133_05105" /note="nudix motif; other site" /db_xref="CDD:72909" gene 998504..998875 /locus_tag="AGROH133_05106" /db_xref="GeneID:10266757" CDS 998504..998875 /locus_tag="AGROH133_05106" /note="Protein of unknown function UPF0060; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278301.1" /db_xref="GI:325292437" /db_xref="GeneID:10266757" /translation="MVYSRIGSIVHAEDGGMKVYLIYALAAVAEIAGCFSFWAWLKLG KTGWILLPGMLALAAFAWALTLVPTETAGRAYAAYGGIYIAASLLWLWGVEGQVPDRW DIAGGAVCLAGTAIILFGPRA" misc_feature 998552..998872 /locus_tag="AGROH133_05106" /note="Uncharacterised BCR, YnfA/UPF0060 family; Region: UPF0060; cl00757" /db_xref="CDD:186176" gene 998886..999647 /locus_tag="AGROH133_05111" /db_xref="GeneID:10266758" CDS 998886..999647 /locus_tag="AGROH133_05111" /note="Protein of unknown function DUF159; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278302.1" /db_xref="GI:325292438" /db_xref="GeneID:10266758" /translation="MCGRFVLKATPEEIADYLDLIGLEDFPARFNIAPTQPILIVLEG ERQERGSNLPNRRAMLVRWGFLPGWVKDPKDFPLLINARSETAIGKASFRAAMRHRRV LVPATGFYEWRRPPKEEGGKPQPYFIRPKNGGIVAFAGLMETWSSADGSEVDTGAILT TAANAAIGRIHDRMPVVIAPEDFSRWLDCKTQEPREVADLMRSVQDDFFEMIPVSDKV NKVANVGADLIEPVPESAPLAKMRLPKDDGQMSLF" misc_feature 998886..999587 /locus_tag="AGROH133_05111" /note="Uncharacterised ACR, COG2135; Region: DUF159; cl03646" /db_xref="CDD:194657" gene complement(999723..1001015) /locus_tag="AGROH133_05112" /db_xref="GeneID:10266759" CDS complement(999723..1001015) /locus_tag="AGROH133_05112" /note="GGDEF: diguanylate cyclase (GGDEF) domain; Response regulator containing a CheY-like receiver domain and a GGDEF domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004278303.1" /db_xref="GI:325292439" /db_xref="GeneID:10266759" /translation="MQDKILLIEDSVALSMLLKSRLSEETPAEVIHCDSMAQADILLR AHDFTLALTGLNLPDAPKGEILALLADHKVPAIVFTATVDEEARKRYAEKKIIDYIVK DGHRTVDAVVKTVDRILTNRLFSVLVVDDVRTARSGLVEILERQNFRVSEAHSGKQAL EILSQDPSIQLVITDYHMPDMDGYELTRRIRDSRSSEDLRVIGISSSTDRLLSASFLK AGASDFVYRPFVPEELQCRIDNNIETLKQLKRLRELAERDHLTGLPNRRSFFERTRAL MDVINDNDENGAVAILDIDHFKKINDTLGHDAGDRALKKLAELLHDMCHEQRHIPARL GGEEFAVFLRGLNAHAAYQFCEELRGAVEKNGRQLSGSSLALTISLGVVEIEKGEPFD NQLNAADQLLYLAKANGRNRVYSDIMIQEGLQKIGRNG" misc_feature complement(999762..1001015) /locus_tag="AGROH133_05112" /note="Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]; Region: PleD; COG3706" /db_xref="CDD:33501" misc_feature complement(1000659..1001000) /locus_tag="AGROH133_05112" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1000707..1000712,1000719..1000721, 1000776..1000778,1000830..1000832,1000854..1000856, 1000986..1000991)) /locus_tag="AGROH133_05112" /note="active site" /db_xref="CDD:29071" misc_feature complement(1000854..1000856) /locus_tag="AGROH133_05112" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1000830..1000838,1000842..1000847)) /locus_tag="AGROH133_05112" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(order(1000698..1000700,1000707..1000712)) /locus_tag="AGROH133_05112" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1000296..1000637) /locus_tag="AGROH133_05112" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1000332..1000337,1000344..1000346, 1000401..1000403,1000467..1000469,1000491..1000493, 1000623..1000628)) /locus_tag="AGROH133_05112" /note="active site" /db_xref="CDD:29071" misc_feature complement(1000491..1000493) /locus_tag="AGROH133_05112" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1000467..1000475,1000479..1000484)) /locus_tag="AGROH133_05112" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1000329..1000337) /locus_tag="AGROH133_05112" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(999774..1000247) /locus_tag="AGROH133_05112" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(1000005..1000007,1000137..1000139)) /locus_tag="AGROH133_05112" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(1000002..1000013,1000017..1000019, 1000086..1000088,1000098..1000100,1000110..1000115, 1000122..1000124)) /locus_tag="AGROH133_05112" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(999945..999947,1000029..1000031)) /locus_tag="AGROH133_05112" /note="I-site; other site" /db_xref="CDD:143635" gene complement(1001418..1001549) /locus_tag="AGROH133_05113" /db_xref="GeneID:10266760" CDS complement(1001418..1001549) /locus_tag="AGROH133_05113" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278304.1" /db_xref="GI:325292440" /db_xref="GeneID:10266760" /translation="MTNETKAQPQAKPDLNSHYRPLGLKAVAAAALMLKRKPAAKTA" gene complement(1001722..1002591) /gene="pssA" /locus_tag="AGROH133_05114" /db_xref="GeneID:10266761" CDS complement(1001722..1002591) /gene="pssA" /locus_tag="AGROH133_05114" /EC_number="2.7.8.8" /codon_start=1 /transl_table=11 /product="Phosphatidylserine synthase" /protein_id="YP_004278305.1" /db_xref="GI:325292441" /db_xref="GeneID:10266761" /translation="METPISEPQQNGKHEGRNDSGRGPRLREIPFRLVIPNLITVLAI CAGLSGVRLAIEGRFELAVGMVLLAAFLDGIDGRIARMMKATSKFGEQMDSLADIVNF GVAPALVVYIYMLDQARSIGWIAALIYVIAAGLRLARFNVMIERPVKAPWQNEFFVGV PAPMGAMLVLLPVYLGFLGVEPGKPFAYIAAAYTVLIGYLLISRLPVWSGKSGTSRIR RDLVLPMILVVVLYVAMLMSFTWEVLVLTVAAYLVFIPISARLWHRRYGTLTIEEDAH DDANGGNGLDRGI" misc_feature complement(1001791..1002519) /gene="pssA" /locus_tag="AGROH133_05114" /note="Phosphatidylserine synthase [Lipid metabolism]; Region: PssA; COG1183" /db_xref="CDD:31376" misc_feature complement(1001974..1002474) /gene="pssA" /locus_tag="AGROH133_05114" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene complement(1002615..1003313) /gene="psd" /locus_tag="AGROH133_05123" /db_xref="GeneID:10266762" CDS complement(1002615..1003313) /gene="psd" /locus_tag="AGROH133_05123" /EC_number="4.1.1.65" /note="catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine" /codon_start=1 /transl_table=11 /product="Phosphatidylserine decarboxylase" /protein_id="YP_004278306.1" /db_xref="GI:325292442" /db_xref="GeneID:10266762" /translation="MNLFDTIRNTIVPIHKEGYVFVAAFFVASLVLGWISEPLFWVGL VLTAWCAYFFRDPERVTPQDDDLIISPADGKVSAIQTVVPPLELELGKEPMVRISVFM NVFNCHVNRAPVRGRIVNVAYRPGLFLNAEVDKASEDNERNGLVIETAHGKVGVVQIA GMVARRIVCWVKPNEPVDAGERFGLIRFGSRLDIFLPEGFQPRVSVGQTAIAGETVLA DLGSAKGPVLSRRG" misc_feature complement(1002651..1003277) /gene="psd" /locus_tag="AGROH133_05123" /note="Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656" /db_xref="CDD:194662" gene complement(1003478..1005364) /locus_tag="AGROH133_05125" /db_xref="GeneID:10266763" CDS complement(1003478..1005364) /locus_tag="AGROH133_05125" /note="ABC transporter, transmembrane region, type 1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004278307.1" /db_xref="GI:325292443" /db_xref="GeneID:10266763" /translation="MATKKKTISADSSNPTQTLINLWPYMWPEGRLDLKMRVIWATAF LVVAKLVLILVPYFFKWATDALNGKLDMVGLVPAFLLGAVALVIAYNLTRLIQVGLNQ LRDSLFASVGQHAVRQLAYRTFVHMHRLSLRFHLERKTGGLSRVIERGTKGIETIVRF TILNTAPTFIEFLLTAIIFWTSYGFSYVLVTVVTVWAYIWFTVRASNWRISIRRAMND SDTDANTKAIDSLLNFETVKYFGNEEMEAKRFDVAMERYEKSAISIWTSLGWLNFGQG VIFGIGSTVMMLMSAMAVQRGEQTIGDFVFINALLLQLSVPLNFIGFVYREIRQGLTD IEQMFELLEVEAEVTDRADAKPLVAGPGAISFRDVHFAYDPERPILKGISFDVPAGKT VAIVGPSGAGKSTISRLLYRFYDIQEGAVTIDGQDIRDVTQKSLRSMIGMVPQDTVLF NDTLAYNIRYGRPSATTEEVTAAADAAQISAFIGKLPEGYATMVGERGLKLSGGEKQR VAIARTILKAPPILILDEATSALDTHTEQEIQSALDIVSKNRTTLVIAHRLSTVISAD EIIVLKEGLIAERGTHASLMAQNGLYASMWSRQREAIRAEEMLRHVRETDDLGVVDRG EPAH" misc_feature complement(1004411..1005235) /locus_tag="AGROH133_05125" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(1003571..1005058) /locus_tag="AGROH133_05125" /note="ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]; Region: ATM1; COG5265" /db_xref="CDD:34862" misc_feature complement(1003568..1004275) /locus_tag="AGROH133_05125" /note="ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to...; Region: ABCC_ATM1_transporter; cd03253" /db_xref="CDD:73012" misc_feature complement(1004153..1004176) /locus_tag="AGROH133_05125" /note="Walker A/P-loop; other site" /db_xref="CDD:73012" misc_feature complement(order(1003694..1003696,1003787..1003792, 1004030..1004032,1004150..1004158,1004162..1004167)) /locus_tag="AGROH133_05125" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73012" misc_feature complement(1004030..1004041) /locus_tag="AGROH133_05125" /note="Q-loop/lid; other site" /db_xref="CDD:73012" misc_feature complement(1003835..1003864) /locus_tag="AGROH133_05125" /note="ABC transporter signature motif; other site" /db_xref="CDD:73012" misc_feature complement(1003787..1003804) /locus_tag="AGROH133_05125" /note="Walker B; other site" /db_xref="CDD:73012" misc_feature complement(1003769..1003780) /locus_tag="AGROH133_05125" /note="D-loop; other site" /db_xref="CDD:73012" misc_feature complement(1003688..1003708) /locus_tag="AGROH133_05125" /note="H-loop/switch region; other site" /db_xref="CDD:73012" gene complement(1005474..1007477) /locus_tag="AGROH133_05132" /db_xref="GeneID:10266764" CDS complement(1005474..1007477) /locus_tag="AGROH133_05132" /note="Peptidoglycan-binding LysM; Uncharacterized protein containing LysM domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278308.1" /db_xref="GI:325292444" /db_xref="GeneID:10266764" /translation="MKNNKAGLLALIVLGIASLLMIFFVLPRISNDGKPIGDAINEAG NAVKNSVEMGSDKAGDILSDAAQETANIADKVGRLAASATQSIKDLTTLFADSKVPSD ADFAAARKKVEASLKELTNIEIPETLDETTSRLITTARTAAERTTAFLRGLPDSAAAA AAQVRRLAGVFTGTDDGAAQQPQPAAPAADAAQSTSGAPTFDVLRVEPDGSAVVAGKA QPGSKLEILSNGKVIAQTTIDGSGDFAAVFDNPLPPGDHELVLRSTDASGKATQSEEV ATVSVPNGKAGELLAMVSKPGEASRVLAMPEAAPSALQPPQAAQPGQSATPAATTTPA PAAGTPAPSGAAAPLTSTVQVTAVEFEGSKIFVAGSAPAASSVRALVDDKEIGKSTTE ASGHFVIEGNVDLSVGSHIITVEELNADGTVKVRVRVPFERPQTDQATVAMQAPSATP SAATTTAPSENQSTASDRAAFEKLRTDVAKAFGILSNLYKDQATPALDQAIAGRSAVV IGLKSLSEFRTAAGTEPSFTAFAGDIAAKARQLLTSVEAWPNDVAGIGKGIATLASRL ADLHIIAPPAPAPQAPAGPQTFEQPPLAESQNSVIIRRGDTLWQISRRVYGQGVRYTT IYLANEDQIKNPDLIEPGQIFGVPEKALPNAEELHRKRLKSGS" misc_feature complement(1005879..>1006418) /locus_tag="AGROH133_05132" /note="Uncharacterized protein containing LysM domain [Function unknown]; Region: XkdP; COG1652" /db_xref="CDD:31838" misc_feature complement(1005534..1005674) /locus_tag="AGROH133_05132" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cl00107" /db_xref="CDD:153515" gene 1007634..1008254 /locus_tag="AGROH133_05135" /db_xref="GeneID:10266765" CDS 1007634..1008254 /locus_tag="AGROH133_05135" /note="Conserved hypothetical protein CHP00730; Predicted Rossmann fold nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278309.1" /db_xref="GI:325292445" /db_xref="GeneID:10266765" /translation="MTDKNTAIRSICVYCGSQPGRDPAHMEAGRALGKSIAENGIRLV YGGGTKGIMGAVASGVLSNGGEVTGIIPEFLVDMEATRHSLGQLNELIVTKDMHERKH MMFERSDAFVTLPGGVGTLEEIVEIMTWAQLGRHAKPIVFANINGFWNPMLELVQHMR DQGFIHRAHLLNPLVIDEVKDIVPAIIDRALAQQNPEGDPSVISRL" misc_feature 1007661..1008191 /locus_tag="AGROH133_05135" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene 1008449..1010209 /gene="pbp" /locus_tag="AGROH133_05136" /db_xref="GeneID:10266766" CDS 1008449..1010209 /gene="pbp" /locus_tag="AGROH133_05136" /note="Beta-lactamase-type transpeptidase fold, Penicillin binding protein transpeptidase domain; Cell division protein FtsI/penicillin-binding protein 2" /codon_start=1 /transl_table=11 /product="penicillin-binding protein" /protein_id="YP_004278310.1" /db_xref="GI:325292446" /db_xref="GeneID:10266766" /translation="MIAFLVRLKSRTHFIIQRSPFQGRDAILGSAARRRVDAKKRLGI LIAVFVVVYGVVAARLVQYGLAEPIATAWINTGATAVASRPDILDRNGTLLATDLNMV SLYADPRRVVDADEVVEKLATVIPNLDWRETHRRLRSDSGFQWLRRQLTPRQQADILN LGIPGIGFRPEKRRFYPGGPAASHIIGHVNVDNQGLAGMERYLDQQGLADLRATGLAS GAPLEPVRLSIDLRVQNIVREVVLKAKTAYQAEAAGSVILDVETGEVLAMASVPDYDP NEPSRTLADGSIDREYEKGWFNRMSNATFEMGSTFKSFTLAMGLDAGAITLNSVVDAS RPIRMGGFTIKDFKGRNRPLSIPEVFQYSSNIGTAAVADKVGVEGHQQFLTKLGLLSR MDTEMPGVATPTQPRTWKKINSVTISFGHGVATTPLQTAVAAAALINGGSLISPTFLP RSREDAAVLSRTVINGKTSADMRYLFNWNGIKGSGRGAQVEGFHVGGKTGTADKVING RYAKDINFNAFVAGFPMHKPKYVVLTMIDAPRTGVNGGRTAASTAAPMTREIITQTAG LLGVKPRFGYDATPQLLVDY" misc_feature 1008692..1010137 /gene="pbp" /locus_tag="AGROH133_05136" /note="penicillin-binding protein 2; Region: pbp2_mrdA; TIGR03423" /db_xref="CDD:188321" misc_feature 1008692..1009066 /gene="pbp" /locus_tag="AGROH133_05136" /note="Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717" /db_xref="CDD:190723" misc_feature 1009214..1010131 /gene="pbp" /locus_tag="AGROH133_05136" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene complement(1010267..1011175) /gene="rarD" /locus_tag="AGROH133_05138" /db_xref="GeneID:10266767" CDS complement(1010267..1011175) /gene="rarD" /locus_tag="AGROH133_05138" /note="Predicted permeases" /codon_start=1 /transl_table=11 /product="RarD protein" /protein_id="YP_004278311.1" /db_xref="GI:325292447" /db_xref="GeneID:10266767" /translation="MALDKTLPAQEGGDSARGFAFALSAYLLWGFLPIYMKAVAHISP IEVIVHRVIWSVPIGAAVLIALGRTAEIRTALKTPKMLAMASLTAALISINWGIYIWA IGAGRALDAALGYFINPLFSIFLGAVLLKEKLYPAQIAAIGLVGLAVAILTWHAGSLP WVSIALTVSWGFYAFFRKTLPIGATQGFLLEVMLLSVPAVLVLAWLAISGQAHFMAGN ATDTWLLAASGIVTAVPLILYGNGAKLLRLSTIGIMQYIAPTMIFLIAIFIFKEPFDM VRMAAFAMIWVALAIYTASSLMRLKR" misc_feature complement(1010270..1011136) /gene="rarD" /locus_tag="AGROH133_05138" /note="Predicted permeases [General function prediction only]; Region: RarD; COG2962" /db_xref="CDD:32782" gene complement(1011391..1012347) /gene="pip" /locus_tag="AGROH133_05149" /db_xref="GeneID:10266768" CDS complement(1011391..1012347) /gene="pip" /locus_tag="AGROH133_05149" /EC_number="3.4.11.5" /note="Peptidase S33, proline iminopeptidase 1; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)" /codon_start=1 /transl_table=11 /product="proline iminopeptidase" /protein_id="YP_004278312.1" /db_xref="GI:325292448" /db_xref="GeneID:10266768" /translation="MTEELRSFYPEIEPFESGILDVGDGHTIYWERVGTRGAKPAVFL HGGPGGGVNPTHRRVFDPALYDVILFDQRGCGRSTPHAELEANTTWHLVADIERLRAL CGFEKWLVFGGSWGSTLALAYAETHPERVSELVLRGIYTVTRPELDWYYQFGVSEMYP DRWENFIAPIPEAERGEMMQAYNRYLTGTDEAKKLECARAWSQWEGATIALVTDPARV EDFGEDKYAIAFARIENHFFVNGGWLEEGQLLRDAGKLRDIPGVIVHGRYDMPCPLKY AWQLAKAWPKADFHIVEAAGHALSEPGILDQLIRATDRFGGK" misc_feature complement(1011403..1012314) /gene="pip" /locus_tag="AGROH133_05149" /note="proline iminopeptidase, Neisseria-type subfamily; Region: pro_imino_pep_1; TIGR01249" /db_xref="CDD:130316" gene complement(1012351..1012830) /locus_tag="AGROH133_05150" /db_xref="GeneID:10266769" CDS complement(1012351..1012830) /locus_tag="AGROH133_05150" /note="Glutathione-dependent formaldehyde-activating enzyme; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278313.1" /db_xref="GI:325292449" /db_xref="GeneID:10266769" /translation="MNGSESFSGGCQCGAVRYRIDGGLRYPHLCHCRMCQKASGNYFM PLAASTRAKFEMTRGEASWFQSSDHVRRGFCGRCGTPLFYDMPDADFINITLGSLDEP ELIKPEAQSNLDSKIHWFGELDGLPVEPEAAPDENRLPVNNRQHPDRHTAEWPPEGK" misc_feature complement(1012426..1012821) /locus_tag="AGROH133_05150" /note="Glutathione-dependent formaldehyde-activating enzyme; Region: GFA; cl01553" /db_xref="CDD:186452" gene complement(1012827..1013291) /locus_tag="AGROH133_05151" /db_xref="GeneID:10266770" CDS complement(1012827..1013291) /locus_tag="AGROH133_05151" /note="Glutathione-dependent formaldehyde-activating enzyme; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278314.1" /db_xref="GI:325292450" /db_xref="GeneID:10266770" /translation="MSETGFSGGCQCGAVRFHAGKIGRPSICHCRMCQKHFGNFFGAL VTADQAHLTWTRGQPSLFRSSAKIHRGFCNKCGTPLTYHYPGGVEIAIGTFDHPERIE PQVQVNIHKRMPWIEQLFSKPAIEQSVDEADITSFQHPDHDTKVWPPEDDRA" misc_feature complement(1012899..1013270) /locus_tag="AGROH133_05151" /note="Glutathione-dependent formaldehyde-activating enzyme; Region: GFA; cl01553" /db_xref="CDD:186452" gene complement(1013288..1013764) /locus_tag="AGROH133_05152" /db_xref="GeneID:10266771" CDS complement(1013288..1013764) /locus_tag="AGROH133_05152" /note="Glutathione-dependent formaldehyde-activating enzyme; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278315.1" /db_xref="GI:325292451" /db_xref="GeneID:10266771" /translation="MTTYTGGCQCGAIRFRATGDLKDSSICHCRMCQKAFGAYYAPLV SVRGVDFEWTRGEPKRFQSSSVVKRGFCPECGTPLTYEAPDGMAVAAGAFDDPAALPP TIQWGVERKIDFVDSIHTLPAVPTEDDLTSVDYLTHLVSYQHPDHDTESWPPENKR" misc_feature complement(1013378..1013764) /locus_tag="AGROH133_05152" /note="Glutathione-dependent formaldehyde-activating enzyme; Region: GFA; cl01553" /db_xref="CDD:186452" gene complement(1013761..1014207) /locus_tag="AGROH133_05153" /db_xref="GeneID:10266772" CDS complement(1013761..1014207) /locus_tag="AGROH133_05153" /note="Protein of unknown function (DUF559); Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278316.1" /db_xref="GI:325292452" /db_xref="GeneID:10266772" /translation="MPHDRPLISSTPCYNLAATDQVASIPMPHAKVSPRHRKHARQMR KVMTGAELKFWNAVRAHRLAGLSFRRQLPVAGYIVDFTCPSHKIIVELDRFQHAEDAA ADYDRQRTETLEQCGWRVLRFWNEDVVKDIDNVCLHIIRTVKESQP" misc_feature complement(1013776..1014105) /locus_tag="AGROH133_05153" /note="Domain of unknown function, appears to be related to a diverse group of endonucleases; Region: Endonuclease_DUF559; cd01038" /db_xref="CDD:29960" misc_feature complement(order(1013890..1013892,1013917..1013919, 1013968..1013970,1014055..1014057)) /locus_tag="AGROH133_05153" /note="putative active site [active]" /db_xref="CDD:29960" gene complement(1014387..1015772) /gene="cysS" /locus_tag="AGROH133_05154" /db_xref="GeneID:10266773" CDS complement(1014387..1015772) /gene="cysS" /locus_tag="AGROH133_05154" /EC_number="6.1.1.16" /note="catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="Cysteinyl-tRNA synthetase" /protein_id="YP_004278317.1" /db_xref="GI:325292453" /db_xref="GeneID:10266773" /translation="MSLRLKLHNTLTREKTEFAPIDADNVRMYVCGPTVYDFAHIGNA RPVIVFDVLYRLLRHVYGESHVTYARNITDLDDKINARALRDYPHLPLNDAIHAVTKK TADQFHEDVAALGCLQPTVEPRATDYIAEMIDIIEKLIARGHAYAAGGEVLFDTRSMA DYGQLSKRPLDEQQAGARVAVEAHKKTPGDFVLWKLSSDNEPGWESPWGRGRPGWHIE CSAMAGRYLGEVFDIHGGGLDLIFPHHENEIAQSRCAHGTQVMANVWMHNGFVQVEGR KMSKSEGNFVTIYELLHTEKFGGRQWPGEVLRLAMLMTHYREPIDFSVKRLEEAERLL AKWPAAEASDAAPDETVLDALADDLNTVAAVQALHALAHAANTDPARLPAFAASAALL GVLPKKAEVDEAIVSAVDALVQLRLEMLKAKNFAEADRLRDELSEKGIQLKDGKDKET GERTTTWELKR" misc_feature complement(1014393..1015760) /gene="cysS" /locus_tag="AGROH133_05154" /note="cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260" /db_xref="CDD:178951" misc_feature complement(<1015368..1015757) /gene="cysS" /locus_tag="AGROH133_05154" /note="nucleotidyl transferase superfamily; Region: nt_trans; cl00015" /db_xref="CDD:193613" misc_feature complement(1015644..1015655) /gene="cysS" /locus_tag="AGROH133_05154" /note="active site" /db_xref="CDD:173912" misc_feature complement(1015644..1015655) /gene="cysS" /locus_tag="AGROH133_05154" /note="HIGH motif; other site" /db_xref="CDD:173912" misc_feature complement(order(1015644..1015646,1015653..1015655)) /gene="cysS" /locus_tag="AGROH133_05154" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(1014804..>1015130) /gene="cysS" /locus_tag="AGROH133_05154" /note="catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672" /db_xref="CDD:173899" misc_feature complement(1014930..1014944) /gene="cysS" /locus_tag="AGROH133_05154" /note="KMSKS motif; other site" /db_xref="CDD:173899" misc_feature complement(1014402..>1014584) /gene="cysS" /locus_tag="AGROH133_05154" /note="Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020" /db_xref="CDD:196302" gene complement(1015998..1016738) /locus_tag="AGROH133_05155" /db_xref="GeneID:10266774" CDS complement(1015998..1016738) /locus_tag="AGROH133_05155" /note="Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="short-chain dehydrogenase/reductase SDR" /protein_id="YP_004278318.1" /db_xref="GI:325292454" /db_xref="GeneID:10266774" /translation="MTINLKGRIALVTGASRGIGYFTALELAKAGAHVIACARTVGGL EDLDDAIKAVGGTATLVPFDLADMNAIDALGANIFERWGKLDILVANAGVLGVISPVG HIEAKVFEKVMTINVTATWRLIRSVEPLLLRSDAGRALILSSGAAHSCRPFWGVYSTS KAAVEALARTWAAETDKTALRINSINPGATRTAMRAQAMPGEDPADVPHPSEVAAAIV QLASPELTETGKLFVVREGKFLDYRQPE" misc_feature complement(1016067..1016732) /locus_tag="AGROH133_05155" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(1016067..1016711) /locus_tag="AGROH133_05155" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature complement(order(1016160..1016165,1016169..1016180, 1016256..1016258,1016268..1016270,1016307..1016315, 1016394..1016396,1016460..1016468,1016544..1016552, 1016619..1016627,1016682..1016693,1016697..1016699)) /locus_tag="AGROH133_05155" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature complement(order(1016256..1016258,1016268..1016270, 1016307..1016309,1016391..1016393)) /locus_tag="AGROH133_05155" /note="active site" /db_xref="CDD:187544" gene complement(1016889..1018382) /gene="purF" /locus_tag="AGROH133_05156" /db_xref="GeneID:10266775" CDS complement(1016889..1018382) /gene="purF" /locus_tag="AGROH133_05156" /EC_number="2.4.2.14" /note="Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; Glutamine phosphoribosylpyrophosphate amidotransferase" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase" /protein_id="YP_004278319.1" /db_xref="GI:325292455" /db_xref="GeneID:10266775" /translation="MIEPLSHSTFNEEIDGDTLHEECGVFGILGHADASALTALGLHA LQHRGQEAAGIVSFDGKRFHQERHMGLVGDHYTDPATLARLPGSIAIGHTRYSTTGEV AMRNVQPLFAELEEGGISIAHNGNFTNGLTLRRQIIATGAICQSTSDTEVVLHLIARS RHSSTADRFIDAIRQMEGGYSMLAMTRTKLIAARDPIGIRPLVMGELDGKPIFCSETC ALDIIGAKFVRDVENGEVIICEIQPDGSITIDARKPSKPQPERLCLFEYVYFARPDSV VGGRNVYTTRKNMGMNLAKEAPLEADVVVPVPDGGTPAALGFAQESGIPFEYGIIRNH YVGRTFIEPTQQIRAFGVKLKHSANRAMIEGKRVVLVDDSIVRGTTSLKIVQMIREAG AKEVHIRVASPMIFHPDFYGIDTPDADKLLANQYADVDAMAKFIGADSLAFLSIDGLY RAVGGENRNNARPQFTDHYFTGDYPTRLLDQNGEAMGSKISVLASNG" misc_feature complement(1016928..1018373) /gene="purF" /locus_tag="AGROH133_05156" /note="amidophosphoribosyltransferase; Provisional; Region: PRK09123" /db_xref="CDD:181660" misc_feature complement(1017552..1018316) /gene="purF" /locus_tag="AGROH133_05156" /note="Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the...; Region: GPATase_N; cd00715" /db_xref="CDD:48479" misc_feature complement(order(1017936..1017938,1018008..1018013, 1018098..1018100,1018236..1018241,1018314..1018316)) /gene="purF" /locus_tag="AGROH133_05156" /note="active site" /db_xref="CDD:48479" misc_feature complement(order(1017906..1017911,1017918..1017923, 1017930..1017932,1018047..1018049,1018233..1018235, 1018254..1018256,1018263..1018268)) /gene="purF" /locus_tag="AGROH133_05156" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:48479" misc_feature complement(1017183..>1017446) /gene="purF" /locus_tag="AGROH133_05156" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene complement(1018521..1019108) /gene="cvpA" /locus_tag="AGROH133_05157" /db_xref="GeneID:10266776" CDS complement(1018521..1019108) /gene="cvpA" /locus_tag="AGROH133_05157" /note="Uncharacterized membrane protein, required for colicin V production" /codon_start=1 /transl_table=11 /product="colicin V production protein" /protein_id="YP_004278320.1" /db_xref="GI:325292456" /db_xref="GeneID:10266776" /translation="MPITIFDGIVIAVVLFSAILAMVRGFSREILSIASWAGSVAAAY YLFPILLPYARNYTDDDKIAIAGSAGVVFLISLVVISFITSRIADFIIDSRIGALDRT LGFLFGAARGILLLVVAVAFWNWLVDVKTQPQWVTQAKSKPFLDGLVGKLEAVLPDDI EPQIRARILGKPQEPAAAQTPAEDVPATNPPATNN" misc_feature complement(1018596..1019102) /gene="cvpA" /locus_tag="AGROH133_05157" /note="Colicin V production protein; Region: Colicin_V; cl00567" /db_xref="CDD:193873" gene complement(1019204..1020604) /gene="radA" /locus_tag="AGROH133_05162" /db_xref="GeneID:10266777" CDS complement(1019204..1020604) /gene="radA" /locus_tag="AGROH133_05162" /note="Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; Predicted ATP-dependent serine protease" /codon_start=1 /transl_table=11 /product="DNA repair protein RadA" /protein_id="YP_004278321.1" /db_xref="GI:325292457" /db_xref="GeneID:10266777" /translation="MAKAKTQFVCQNCGTVHTRWAGKCEGCGEWNTIVEEDPMGGIGS GPGKTPKKGRAVALTALSGEIEEAPRIPTGISELDRATGGGFVRGSAVLIGGDPGIGK STLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGAAETDVLLAAETNVEDILAT ISEGKRPDLVIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRYAKQTGATMVLVGHVT KEGQIAGPRVVEHMVDAVLYFEGDRGHHYRILRTVKNRFGPTDEIGVFEMSDRGLREV SNPSELFLGERNEKSPGAAVFAGMEGTRPILVEVQALVAATSLGTPRRAVVGWDSSRL AMILAVLEAHCGVKLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVY FGEISLSGAVRPVSHTGQRLKEAEKLGFSAALLPSASAELPKAGKGRWTEIESLPDLV ARIAGSGNRFKQVEDD" misc_feature complement(1019237..1020604) /gene="radA" /locus_tag="AGROH133_05162" /note="DNA repair protein RadA; Provisional; Region: PRK11823" /db_xref="CDD:183326" misc_feature complement(1019492..1020583) /gene="radA" /locus_tag="AGROH133_05162" /note="Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121" /db_xref="CDD:29987" misc_feature complement(1020296..1020319) /gene="radA" /locus_tag="AGROH133_05162" /note="Walker A motif/ATP binding site; other site" /db_xref="CDD:29987" misc_feature complement(order(1020083..1020088,1020233..1020235, 1020239..1020241,1020296..1020304,1020314..1020316)) /gene="radA" /locus_tag="AGROH133_05162" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29987" misc_feature complement(1020086..1020097) /gene="radA" /locus_tag="AGROH133_05162" /note="Walker B motif; other site" /db_xref="CDD:29987" gene complement(1020802..1021071) /locus_tag="AGROH133_05163" /db_xref="GeneID:10266778" CDS complement(1020802..1021071) /locus_tag="AGROH133_05163" /note="addiction module antidote protein, CC2985; Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278322.1" /db_xref="GI:325292458" /db_xref="GeneID:10266778" /translation="MPEIHLSEQDERFIEEQVAAGVYSDADAVIHASLQLLSSDERKR VALKLLIQEGIDDAEAGRVHRYASQDDFLSDIKRVSVQQKTGTGH" misc_feature complement(1020850..1021071) /locus_tag="AGROH133_05163" /note="Uncharacterised protein family (UPF0156); Region: RHH_2; cl01448" /db_xref="CDD:163980" gene complement(1021136..1022311) /gene="alr" /locus_tag="AGROH133_05164" /db_xref="GeneID:10266779" CDS complement(1021136..1022311) /gene="alr" /locus_tag="AGROH133_05164" /EC_number="5.1.1.1" /codon_start=1 /transl_table=11 /product="Alanine racemase" /protein_id="YP_004278323.1" /db_xref="GI:325292459" /db_xref="GeneID:10266779" /translation="MTDDFEDTFPEHETDAFEHAPLRLTVDLGALADNWRDMKKRSGK ARTAAVVKADAYGLGIEDCGATLYHAGARDFFVATVSEGATLRSYAPEARIFVLSGIW QGQERQVFDNDLVPVLASEEQLSFWMATVAERGEHPCALHVDTGFNRLGLPLDDALFL ADDVTRPASFDPVLVLSHLACADTPSSPMNKVQLESFRKVSAAFEGIESSLSASAGIF LGPDYHFDLTRPGIALYGGEAINDVANPMRPVAKAEARIIQIREAGEGQTVSYGGTYL LKRASRLAIASVGYADGYQRSLSGSGIPLREMGHGGAYGIVNGHKAPVAGRVTMDLTI FDITDIPANAVRTGDYIELFGPKVPLDEVARAAGTIGYEMLTGLGLRYERQYLMADD" misc_feature complement(1021151..1022257) /gene="alr" /locus_tag="AGROH133_05164" /note="Alanine racemase [Cell envelope biogenesis, outer membrane]; Region: Alr; COG0787" /db_xref="CDD:31130" misc_feature complement(1021151..1022251) /gene="alr" /locus_tag="AGROH133_05164" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase; Region: PLPDE_III_AR; cd00430" /db_xref="CDD:143481" misc_feature complement(order(1021196..1021198,1021322..1021327, 1021442..1021444,1021499..1021501,1021616..1021627, 1021670..1021675,1021778..1021780,1021865..1021867, 1021886..1021888,1022018..1022020,1022144..1022146, 1022156..1022158,1022162..1022164)) /gene="alr" /locus_tag="AGROH133_05164" /note="active site" /db_xref="CDD:143481" misc_feature complement(order(1021196..1021198,1021616..1021627, 1021670..1021675,1021778..1021780,1021865..1021867, 1022018..1022020,1022144..1022146,1022156..1022158, 1022162..1022164)) /gene="alr" /locus_tag="AGROH133_05164" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143481" misc_feature complement(order(1021169..1021171,1021193..1021198, 1021205..1021210,1021316..1021321,1021424..1021426, 1021442..1021444,1021457..1021459,1021496..1021504, 1021508..1021513,1021523..1021525,1021529..1021540, 1021772..1021774,1021778..1021780,1021862..1021873, 1021952..1021957,1022066..1022071,1022078..1022080, 1022153..1022158)) /gene="alr" /locus_tag="AGROH133_05164" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143481" misc_feature complement(order(1021196..1021198,1021322..1021327, 1021442..1021444,1021499..1021501,1021778..1021780, 1021865..1021867,1022144..1022146,1022156..1022158)) /gene="alr" /locus_tag="AGROH133_05164" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143481" misc_feature complement(order(1021499..1021501,1022156..1022158)) /gene="alr" /locus_tag="AGROH133_05164" /note="catalytic residues [active]" /db_xref="CDD:143481" gene 1022398..1023255 /locus_tag="AGROH133_05165" /db_xref="GeneID:10266780" CDS 1022398..1023255 /locus_tag="AGROH133_05165" /note="AraC protein, arabinose-binding/dimerisation; AraC-type DNA-binding domain-containing proteins" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004278324.1" /db_xref="GI:325292460" /db_xref="GeneID:10266780" /translation="MHNVSQEQAIDVMPVAATETTRFWRDPRFGGMECLSATFLTHEY SPHAHDTFSIGAIESGSQISTIQGTREQTGPGHLYLINPDEIHDGAPGGGGYRYRMIY PDAALLRDIIEDVTGRAFHGMPSFPRFLPRDPQMAAAFQMAHRRLEAKSGALEADEGM FSVLAALFGRHGSAIILAVETREKTAVYTARDYLSDNYETDIGLEELASIAGLSRAHL IRAFRKEFHITPHAYLTDVRIRRARRLLRSGEMPAEVAALCGFADQAHFTRHFKARTG VTPGQFRTA" misc_feature 1022482..1022889 /locus_tag="AGROH133_05165" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" misc_feature 1022977..1023102 /locus_tag="AGROH133_05165" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" misc_feature 1022998..1023246 /locus_tag="AGROH133_05165" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature <1023154..1023249 /locus_tag="AGROH133_05165" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 1023348..1024052 /locus_tag="AGROH133_05167" /db_xref="GeneID:10266781" CDS 1023348..1024052 /locus_tag="AGROH133_05167" /note="azaleucine resistance protein AzlC; Predicted branched-chain amino acid permease (azaleucine resistance)" /codon_start=1 /transl_table=11 /product="Branched-chain amino acid transport protein azlC" /protein_id="YP_004278325.1" /db_xref="GI:325292461" /db_xref="GeneID:10266781" /translation="MSVLEKRAELGAGLRAAAPLLVAMVPIGAVFGAVAVGKGLSPLE ASLMSILVFAGGSQFVAMDLWTHPASWSALGFAALLVNLRHVLMSASIAGKLDDFTGW RKYAAMLVLTDESWALSEFRAVAGRLTAAFFTGAALSIYLVWNIATLTGALLGSVMGD MTVIGLDFAFPAVFIVLLMGFWKGRETGLVLLASAAAAFVTHALVPGAWYIAAGALAG LSVAAFGCEDEVEQPA" misc_feature 1023417..>1023908 /locus_tag="AGROH133_05167" /note="AzlC protein; Region: AzlC; cl00570" /db_xref="CDD:193874" gene 1024049..1024351 /locus_tag="AGROH133_05174" /db_xref="GeneID:10266782" CDS 1024049..1024351 /locus_tag="AGROH133_05174" /note="Branched-chain amino acid transport protein (AzlD)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278326.1" /db_xref="GI:325292462" /db_xref="GeneID:10266782" /translation="MTLDTNTLLAILAMMAATVATRFGGLLLVNHFTLTPRLKKALGV VPPAVLMAVVTPTAFSSGMAETIACAVTAVAALRLSLLPAATLGVVTVALLRGIVL" misc_feature <1024112..1024348 /locus_tag="AGROH133_05174" /note="Branched-chain amino acid transport protein (AzlD); Region: AzlD; cl00735" /db_xref="CDD:193920" gene complement(1025641..1027137) /gene="dnaC" /locus_tag="AGROH133_05178" /db_xref="GeneID:10266783" CDS complement(1025641..1027137) /gene="dnaC" /locus_tag="AGROH133_05178" /EC_number="3.6.1.-" /note="unwinds double stranded DNA" /codon_start=1 /transl_table=11 /product="Replicative DNA helicase" /protein_id="YP_004278327.1" /db_xref="GI:325292463" /db_xref="GeneID:10266783" /translation="MNDAVRKITPAQPAEPHYREAPNNIEAEQALLGAILVNNDAYYR VSDFLKPVHLYEPLHRKIFEVAGDIIRMGKTANPVTIKTFLPADDKVGDLTVAQYLAR LAAEAVSIINAEDYGRAIYDLALRRALIQIGEDVVNIAYDAPLDMPPQAQIEDTERRL FELAETGRYDGGFQSFNDAVALAIDMAGAAFERDGNLSGISTGIHSLDARMGGLQRSD LIVLAGRPGMGKTSLATNIAYNIAATYDQEVQPDGSFKAKNGGVVGFYSLEMSSEQLA TRIISEQTEVSSSKIRRGDITEADFEKLVACSQMMQKVPLYIDQTGGISIAQLSARAR RLKRQRGLDVLVVDYIQLMTGAGKSGENRVQEITQITTGLKALGKELNVPIIALSQLS RAVESREDKRPQLSDLRESGSIEQDADVVLFVFREEYYVKNMEPRDISDPKYAEWEAL FDKVKGTADVIIAKQRHGPTGTVKLAFQSEFTRFADLADPSFSQYEEH" misc_feature complement(1025647..1027137) /gene="dnaC" /locus_tag="AGROH133_05178" /note="replicative DNA helicase; Provisional; Region: PRK09165" /db_xref="CDD:181676" misc_feature complement(1026772..1027080) /gene="dnaC" /locus_tag="AGROH133_05178" /note="DnaB-like helicase N terminal domain; Region: DnaB; pfam00772" /db_xref="CDD:189711" misc_feature complement(1025704..1026525) /gene="dnaC" /locus_tag="AGROH133_05178" /note="DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984" /db_xref="CDD:29985" misc_feature complement(1026445..1026465) /gene="dnaC" /locus_tag="AGROH133_05178" /note="Walker A motif; other site" /db_xref="CDD:29985" misc_feature complement(order(1025707..1025709,1025740..1025742, 1025860..1025862,1025968..1025970,1026094..1026096, 1026445..1026450)) /gene="dnaC" /locus_tag="AGROH133_05178" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29985" misc_feature complement(1026094..1026105) /gene="dnaC" /locus_tag="AGROH133_05178" /note="Walker B motif; other site" /db_xref="CDD:29985" misc_feature complement(order(1025767..1025772,1025860..1025865, 1025947..1025973,1026046..1026054,1026076..1026081)) /gene="dnaC" /locus_tag="AGROH133_05178" /note="DNA binding loops [nucleotide binding]" /db_xref="CDD:29985" gene 1027449..1027904 /gene="slyA" /locus_tag="AGROH133_05180" /db_xref="GeneID:10266784" CDS 1027449..1027904 /gene="slyA" /locus_tag="AGROH133_05180" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_004278328.1" /db_xref="GI:325292464" /db_xref="GeneID:10266784" /translation="MSRETDKEQLLDEVSAFTRKLRAFFDARVGESGLTLARARALFA LSRRGPLTQTELAEEMEIETPTLVRVLDGMEKQNLIERRSDETDRRAKRIHMTEEGEK TSETVQAVAKSLRSEIAADVSSQDLAMALDVMRRLSANLQNLASGRAQS" misc_feature <1027593..1027829 /gene="slyA" /locus_tag="AGROH133_05180" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 1027901..1029601 /gene="rmrB" /locus_tag="AGROH133_05182" /db_xref="GeneID:10266785" CDS 1027901..1029601 /gene="rmrB" /locus_tag="AGROH133_05182" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="transport protein RmrB" /protein_id="YP_004278329.1" /db_xref="GI:325292465" /db_xref="GeneID:10266785" /translation="MSTVVPQTADETASENADVTVKPASAPESAAAAAAPQPVERPVW LRLCFIFAGLAFFITQGLGMNLVMANLYQLQGEFSATVAEVAWLSAAYMAPYATFSIA LFKVRTQYGLRPFAELSIIVFVVASCLNLFVTDLHSAIVIRFLSGMAAAPLSSLGFLY ILEAFPPARKFSLGFSIALTGTLLSAPLARIVSPSLLQIGGWNALYTMEMGFALISLA LIYLLKVTPPPRAKVIERTDILSYLLFAGGLGCLAVMLTLGRFYWWFETWWLGVLLAT SITLLTLMVVIELPRKNPLLDLRWIFSKTNLHVIAVLLIYRAVSSEQSSTAVSFYQQL GLLNDQTITLYALVLLATVLGGAACAWLMLTKYVDTAHVIALTLIAAGAFLDSQSNNL TRPAQMYLSQMMIAFGAAMFLPPVMAKGFAAALARGAPYLVNFITIFLFTQITGSMLM TGLLGSFVTLREKFHSNILVENILLTNPLVAQRVSQLSGAYSHVITDPALLKAEGLSL LGQQVTKEAYVLAYNDTFLLISTVAALALMALLLHLAWLRIRPRFFRDNVDAAPAPQS " misc_feature 1028048..>1028569 /gene="rmrB" /locus_tag="AGROH133_05182" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(1028090..1028092,1028099..1028107,1028111..1028116, 1028165..1028167,1028174..1028179,1028186..1028188, 1028198..1028203,1028207..1028212,1028348..1028353, 1028360..1028365,1028372..1028377,1028384..1028386, 1028423..1028428,1028435..1028440,1028456..1028458) /gene="rmrB" /locus_tag="AGROH133_05182" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature 1028120..1029487 /gene="rmrB" /locus_tag="AGROH133_05182" /note="drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711" /db_xref="CDD:129794" misc_feature 1028522..>1028668 /gene="rmrB" /locus_tag="AGROH133_05182" /note="Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Region: Complex1_49kDa; cl00417" /db_xref="CDD:193809" gene 1029620..1030687 /locus_tag="AGROH133_05197" /db_xref="GeneID:10266786" CDS 1029620..1030687 /locus_tag="AGROH133_05197" /note="Secretion protein HlyD; Multidrug resistance efflux pump" /codon_start=1 /transl_table=11 /product="HlyD family secretion protein" /protein_id="YP_004278330.1" /db_xref="GI:325292466" /db_xref="GeneID:10266786" /translation="MLKKIFTPVSILVLLGGLAGVALVLYAWRLPPFLSTVEMTDNAF VRGYVTTMSPQVSGYVVDVPVKDYQEVKQGTLLAKIDDRIYRQKQAQAGAALDTQKAA LDNSRQQENAANANIRSSEAAVDSAQASLKQAQLASDRQDNLIKSGAGTSSLQEEAHA ALEKARASLSQAKAALEVSRQDLQTIIVNRSSLQAAVANAEAAVELARIDLDNTEIHA PVDGRLGEIGVRTGQYVTAGTQLMAVVPHDVWVIANFKETQLAGMQVGQPVTISVDAL HRRKLNGRVERFSPATGSEFAVIKPDNATGNFVKIAQRLGVRIAIDADQPLAADLSPG MSVVVHVDKSVAPEGAETAAR" misc_feature 1029695..1030684 /locus_tag="AGROH133_05197" /note="Multidrug resistance efflux pump [Defense mechanisms]; Region: EmrA; COG1566" /db_xref="CDD:31754" gene complement(1030954..1031529) /gene="rplI" /locus_tag="AGROH133_05200" /db_xref="GeneID:10266787" CDS complement(1030954..1031529) /gene="rplI" /locus_tag="AGROH133_05200" /note="in Escherichia coli this protein is wrapped around the base of the L1 stalk; Ribosomal protein L9" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L9" /protein_id="YP_004278331.1" /db_xref="GI:325292467" /db_xref="GeneID:10266787" /translation="MDVILLERINKLGQMGETVKVRDGYARNFLLPQGKALRANAANK TRFETERATLEARNLERKSEAQKVAEALEGKSFIVVRSAGETGQLYGSVAARDVVEIL GAEGFNIGRNQVELNTPIKTIGLHNVTLHLHAEVELQVELNVARSAEEAERQSKGESL TSADAIYGVDEDALRPEDFFDPEADGNDDDE" misc_feature complement(1031089..1031529) /gene="rplI" /locus_tag="AGROH133_05200" /note="50S ribosomal protein L9; Reviewed; Region: rplI; PRK00137" /db_xref="CDD:178893" misc_feature complement(1031386..1031529) /gene="rplI" /locus_tag="AGROH133_05200" /note="Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281" /db_xref="CDD:189922" misc_feature complement(1031089..1031346) /gene="rplI" /locus_tag="AGROH133_05200" /note="Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948" /db_xref="CDD:146531" gene complement(1031544..1032563) /locus_tag="AGROH133_05201" /db_xref="GeneID:10266788" CDS complement(1031544..1032563) /locus_tag="AGROH133_05201" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278332.1" /db_xref="GI:325292468" /db_xref="GeneID:10266788" /translation="MDRSSNCSSFQQDSEVQKLNQTVLITGVLAGICAAFLTLGATAQ SSFSFLLYAGSAMPIFIAGMGWGNRAAVVAIITTAIIGALVISPLFSLTIAIFTLIPA GWLSHLANLARPASELGGPDDLLAWYPLSGIVLHLCLLVSVAVVILGWMIGYGPDLVA RMVDLMMTSVQSREPLFEPNVEALAQTKSLLVLMLPIVQGGLWVILLFAAYYFAARLV GSFGKGLRPREDIPSALRMHRNAIFVFLCGIVAMFFGGVAAMVGAVVCGTFGAGFLMA GYASLHKRARGKDWRLPVLILAYLSAVFVFPLLIILVLGLSDVRSTISLTPTRKTDNT NETNT" gene complement(1032707..1032955) /gene="rpsR" /locus_tag="AGROH133_05209" /db_xref="GeneID:10266789" CDS complement(1032707..1032955) /gene="rpsR" /locus_tag="AGROH133_05209" /note="binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; Ribosomal protein S18" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S18" /protein_id="YP_004278333.1" /db_xref="GI:325292469" /db_xref="GeneID:10266789" /translation="MADTSSSQARRPFHRRRKTCPFSGANAPKIDYKDVRLLQRYISE RGKIVPSRITAVSQKKQRELAQAIKRARFLGLLPYVVA" misc_feature complement(1032713..1032934) /gene="rpsR" /locus_tag="AGROH133_05209" /note="Ribosomal protein S18; Region: Ribosomal_S18; cl00373" /db_xref="CDD:193792" gene complement(1032969..1033430) /gene="rpsF" /locus_tag="AGROH133_05210" /db_xref="GeneID:10266790" CDS complement(1032969..1033430) /gene="rpsF" /locus_tag="AGROH133_05210" /note="binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; Ribosomal protein S6" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S6" /protein_id="YP_004278334.1" /db_xref="GI:325292470" /db_xref="GeneID:10266790" /translation="MALYEHIFLARQDISAQQVDALVEQYKGVIESFGGKVGRVENWG LKSLTYRIKKNRKAHYALMDIDAPAPAIHEIERQMRINEDVLRYMTIAVEAHEEGPSA MMQKRDRDDRPRRDGDRPDRGPREDRGPRAPREGGFGDREDRPRRPREDRA" misc_feature complement(1033113..1033430) /gene="rpsF" /locus_tag="AGROH133_05210" /note="Ribosomal protein S6; Region: Ribosomal_S6; cl00414" /db_xref="CDD:193808" gene complement(1033579..1033671) /locus_tag="AGROH133_05211" /db_xref="GeneID:10266791" CDS complement(1033579..1033671) /locus_tag="AGROH133_05211" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278335.1" /db_xref="GI:325292471" /db_xref="GeneID:10266791" /translation="MGISALFTTSGPIGWWLNGGLVSVTKQQEP" gene complement(1033722..1034972) /locus_tag="AGROH133_05212" /db_xref="GeneID:10266792" CDS complement(1033722..1034972) /locus_tag="AGROH133_05212" /note="Aldo/keto reductase family; Predicted oxidoreductases (related to aryl- alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="YP_004278336.1" /db_xref="GI:325292472" /db_xref="GeneID:10266792" /translation="MSGLAFILFDFHSHSGLRSQGLKPFGTPSTRFCRSIFPFLFIIF FLALRQFPITFMPPFKYLAKHRDISMKQRLLGRTGISVSEICLGTMTWGTQNTEAEAH AQMDYALENGVNFFDTAELYPTTPVSAETQGRTEDYIGTWFEKTGKRDQVVLATKVAG SGRDYIRGGRDIDASAIREAVDTSLTRLKTDYIDLYQIHWPNRGTYHFRGAWSFDASG QEKERTLAEITEKLDTLGELVKAGKIRAIGLSNESAWGTQKYIDIAEARGLPRVATIQ NEYNLLYRSFDLDMAEVAHHEDVGLLAYSPLAAGLLTGKYQNGARPAGSRGTINKDLG GRLQPHQEAPVKAYLELAAQHGLDPAQLAIAFCLTRPFMASAIIGATTMEQLKVDIAA ADVALSEEVLKGIAAIHRQYPMPI" misc_feature complement(1033725..1034765) /locus_tag="AGROH133_05212" /note="Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]; Region: Tas; COG0667" /db_xref="CDD:31011" misc_feature complement(1033749..1034756) /locus_tag="AGROH133_05212" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature complement(order(1033806..1033811,1033818..1033820, 1033833..1033844,1033893..1033895,1034046..1034063, 1034145..1034147,1034220..1034225,1034373..1034378, 1034502..1034504,1034607..1034609,1034622..1034624, 1034703..1034711)) /locus_tag="AGROH133_05212" /note="active site" /db_xref="CDD:119408" misc_feature complement(order(1034376..1034378,1034502..1034504, 1034607..1034609,1034622..1034624)) /locus_tag="AGROH133_05212" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene 1034988..1035932 /gene="fabD" /locus_tag="AGROH133_05213" /db_xref="GeneID:10266793" CDS 1034988..1035932 /gene="fabD" /locus_tag="AGROH133_05213" /EC_number="2.3.1.39" /note="Membrane protease subunits, stomatin/prohibitin homologs" /codon_start=1 /transl_table=11 /product="malonyl-CoA:acyl carrier protein transacylase" /protein_id="YP_004278337.1" /db_xref="GI:325292473" /db_xref="GeneID:10266793" /translation="MGIAFTFPGQGSQAIGMGKELADTYPEARAVFQEVDDALGQKLS DIMWNGPEETLTLTANAQPALMAVSMAVMRVLEARGLKLSDAVSYVAGHSLGEYSALC AAGTFSIADTARLLRIRGNAMQAAVPVGEGAMAAIIGLEHDAVSAICEEAAILGVCQI ANDNGGGQLVISGGKAAVEKAAAIASEKGAKRAIMLPVSAPFHSALMAPAAEAMREAL AAVEKNNPVVPVIANVRAAPVSDANEIAALLVEQVTGQVRWRETVEWFAANNVTQLYE IGSGKVLTGLARRIDKTVNGVAVNGAADIDQLLATLIG" misc_feature 1034988..1035920 /gene="fabD" /locus_tag="AGROH133_05213" /note="Acyl transferase domain; Region: Acyl_transf_1; cl08282" /db_xref="CDD:186816" misc_feature 1034988..1035866 /gene="fabD" /locus_tag="AGROH133_05213" /note="malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128" /db_xref="CDD:188028" gene 1036032..1036769 /gene="fabG" /locus_tag="AGROH133_05214" /db_xref="GeneID:10266794" CDS 1036032..1036769 /gene="fabG" /locus_tag="AGROH133_05214" /EC_number="1.1.1.100" /note="catalyzes the formation of 3-hydroxyacyl-ACP from 3-keto-acyl-ACP; in the rhizobia this protein interacts with NodF to allow for the synthesis of highly polyunsaturated fatty acids necessary for nodulation; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="3-ketoacyl-acyl-carrier-protein reductase NodG" /protein_id="YP_004278338.1" /db_xref="GI:325292474" /db_xref="GeneID:10266794" /translation="MFDLTGRKALVTGATGGIGEEIARLLHSQGATVGLHGTRVEKLE ALAAELGDRVKIFPANLADRAEVKALGEKAEAELEGVDILVNNAGITKDGLFVRMSDE DWDNVIEVNLTAMFRLTRELTHPMMRRRFGRIINITSIVGVTGNPGQANYCASKAGMI GFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKDAIMGAIPMKRMGTGAEVAS AVLYLASNEAAYMTGQTLHVNGGMAMI" misc_feature 1036032..1036766 /gene="fabG" /locus_tag="AGROH133_05214" /note="3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed; Region: PRK12936" /db_xref="CDD:171820" misc_feature 1036050..1036757 /gene="fabG" /locus_tag="AGROH133_05214" /note="beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333" /db_xref="CDD:187594" misc_feature order(1036068..1036070,1036074..1036085,1036140..1036145, 1036206..1036214,1036290..1036301,1036359..1036361, 1036440..1036448,1036485..1036487,1036497..1036499, 1036575..1036580,1036584..1036586,1036590..1036598) /gene="fabG" /locus_tag="AGROH133_05214" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187594" misc_feature order(1036104..1036106,1036116..1036118,1036233..1036235, 1036311..1036322,1036326..1036334,1036341..1036346, 1036353..1036355,1036365..1036370,1036377..1036382, 1036386..1036391,1036398..1036403,1036410..1036412, 1036458..1036481,1036488..1036493,1036500..1036505, 1036512..1036517,1036521..1036538,1036542..1036547, 1036581..1036583,1036644..1036652,1036656..1036667, 1036674..1036676,1036683..1036688,1036692..1036697, 1036707..1036709,1036716..1036754) /gene="fabG" /locus_tag="AGROH133_05214" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187594" misc_feature order(1036314..1036322,1036326..1036328,1036332..1036334, 1036341..1036346,1036353..1036355,1036365..1036370, 1036377..1036382,1036389..1036391,1036398..1036403, 1036410..1036412,1036455..1036481,1036488..1036493, 1036500..1036505,1036512..1036517,1036521..1036529, 1036533..1036538) /gene="fabG" /locus_tag="AGROH133_05214" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187594" misc_feature order(1036362..1036364,1036446..1036448,1036485..1036487, 1036497..1036499) /gene="fabG" /locus_tag="AGROH133_05214" /note="active site" /db_xref="CDD:187594" gene 1037120..1037356 /gene="acpP" /locus_tag="AGROH133_05215" /db_xref="GeneID:10266795" CDS 1037120..1037356 /gene="acpP" /locus_tag="AGROH133_05215" /note="carries the fatty acid chain in fatty acid biosynthesis" /codon_start=1 /transl_table=11 /product="Acyl carrier protein" /protein_id="YP_004278339.1" /db_xref="GI:325292475" /db_xref="GeneID:10266795" /translation="MSDIAERVKKIVIDHLGVDADKVVEGASFIDDLGADSLDTVELV MAFEEEFGVEIPDDAADSILTVGDAVKFIEKAQA" misc_feature 1037120..1037353 /gene="acpP" /locus_tag="AGROH133_05215" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" gene 1037603..1038865 /gene="fabF" /locus_tag="AGROH133_05216" /db_xref="GeneID:10266796" CDS 1037603..1038865 /gene="fabF" /locus_tag="AGROH133_05216" /EC_number="2.3.1.41" /note="FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl-carrier-protein) synthase" /codon_start=1 /transl_table=11 /product="3-oxoacyl-acyl-carrier-protein synthase II" /protein_id="YP_004278340.1" /db_xref="GI:325292476" /db_xref="GeneID:10266796" /translation="MRRVVITGTGMVSPLGCGTEITWERLLAGQNGARLVTEFEVEDL PAKIACRIPVGDGTNGTFNPDDWMELKEQRKIDPFILFGVAAADMALADAGWHPETDE DQIATGVLIGSGIGGLEGIVEAGYTLRDKGPRRISPFFIPGRLINLVSGHVSIRHKLR GPNHAVVTACSTGAHAIGDAARMIAFGDAEVMVAGGAESPVCRIALAGFAACKALSTQ HNDDPQKASRPYDRDRDGFVMGEGAGIVVLEELEHAKARGAKIYAEVVGYGLSGDAYH ITAPSEDGDGAYRCMAMALKRAGLTPDDIDYINAHGTSTMADTIELGAVERLVGDAAS KISMSSTKSATGHLLGAAGAIEAIFATLAIRDNIVPPTLNLDNPDVETKIDLVPHKAR KRQVNVALSNSFGFGGTNASLVLRRYEA" misc_feature 1037603..1038859 /gene="fabF" /locus_tag="AGROH133_05216" /note="3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK07314" /db_xref="CDD:180925" misc_feature 1037606..1038847 /gene="fabF" /locus_tag="AGROH133_05216" /note="Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834" /db_xref="CDD:29421" misc_feature order(1037942..1037944,1037963..1037968,1037978..1037980, 1037984..1037989,1038023..1038025,1038041..1038043, 1038053..1038055,1038065..1038067,1038083..1038085, 1038089..1038091,1038095..1038103,1038137..1038139, 1038146..1038151,1038158..1038160,1038221..1038226, 1038233..1038238,1038413..1038427,1038467..1038469, 1038821..1038823,1038827..1038829) /gene="fabF" /locus_tag="AGROH133_05216" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29421" misc_feature order(1038110..1038112,1038533..1038535,1038641..1038643) /gene="fabF" /locus_tag="AGROH133_05216" /note="active site" /db_xref="CDD:29421" gene 1039079..1039201 /locus_tag="AGROH133_05217" /db_xref="GeneID:10266797" CDS 1039079..1039201 /locus_tag="AGROH133_05217" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278341.1" /db_xref="GI:325292477" /db_xref="GeneID:10266797" /translation="MTGFAGNDDSWRTMRSSRCLYVVQEGIPNLFLPHYLRKKR" gene 1039228..1040448 /locus_tag="AGROH133_05218" /db_xref="GeneID:10266798" CDS 1039228..1040448 /locus_tag="AGROH133_05218" /EC_number="4.1.3.38" /note="Predicted periplasmic solute-binding protein" /codon_start=1 /transl_table=11 /product="aminodeoxychorismate lyase" /protein_id="YP_004278342.1" /db_xref="GI:325292478" /db_xref="GeneID:10266798" /translation="MSDTNQNSQGPYGRDGAGEGNRGPIIPKSPTEALRPEKVPAPPK RSRKAHGQLVIFLNFLMTLAVAVCVLAVAAFYYMINAFQEPGPLQTNTHFTVRNGAGL IEIANNLERNDVVSNARVFRLMTGSYLQKDQTLKAGEYEIKAGASMKDIMMLLESGKS ILYSVSLPEGLTVKQMFARLAADEVLDGELPATLPPEGSLRPDTYRFTRGTKREEIIN QMSAAQEKLIDMIWERRDPDLPIKTVEEFVTLASIVEKETGKDDERAHVASVFYNRLK KGMRLQSDPTIIYGLFGGDGKPSDRPIYQSDLQKQTPFNTYVIKGLPPSPIANPGRAA LEAVANPWRTDDIYFVADGTGGHVFAKTLDEHNANVRRWRKIEAEKAASGANPDVVVD GQPGGTEAEKPANN" misc_feature 1039507..1040346 /locus_tag="AGROH133_05218" /note="YceG-like family; Region: YceG; pfam02618" /db_xref="CDD:190367" misc_feature 1039630..1040337 /locus_tag="AGROH133_05218" /note="proteins similar to Escherichia coli yceG; Region: yceG_like; cd08010" /db_xref="CDD:153433" misc_feature order(1039630..1039632,1039636..1039653,1039678..1039680, 1039690..1039692,1039711..1039716,1039723..1039725, 1040071..1040073,1040077..1040079,1040140..1040142, 1040149..1040151,1040290..1040295,1040314..1040316, 1040323..1040328,1040335..1040337) /locus_tag="AGROH133_05218" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153433" gene 1040517..1041404 /locus_tag="AGROH133_05220" /db_xref="GeneID:10266799" CDS 1040517..1041404 /locus_tag="AGROH133_05220" /note="Conserved hypothetical protein CHP00255, Domain of unknown function (DUF1732); Uncharacterized stress-induced protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278343.1" /db_xref="GI:325292479" /db_xref="GeneID:10266799" /translation="MTLQSMTGFARSEGTSGRYRWAWELRSVNGKGLDVRLRLPNGLE ALETGLREIAAQHLSRGNIQAGLTLTIAENRLEAVINRDALAAVLALKEELGDVVDDK PLSFDTLLSLRGLVDFREAEDDAEAQAARNADVFAGFAAAVEKLKDMREREGASLFAI LSGQIDRIEQLVNLIENDPSRQPEQIAARLAQQIALIGDGMHGLDRDRLHAEAALIAT KADLREEVDRLHAHVQASRELLAHGGPVGRKLDFLAQEFNRESNTICSKSNASAVTAA GIELKVVIDQFREQVQNLE" misc_feature 1040523..1041401 /locus_tag="AGROH133_05220" /note="hypothetical protein; Provisional; Region: PRK11820" /db_xref="CDD:183325" misc_feature 1040523..1040996 /locus_tag="AGROH133_05220" /note="YicC-like family, N-terminal region; Region: YicC_N; pfam03755" /db_xref="CDD:146410" misc_feature 1041144..1041401 /locus_tag="AGROH133_05220" /note="Domain of unknown function (DUF1732); Region: DUF1732; pfam08340" /db_xref="CDD:149411" gene 1041409..1042071 /gene="gmk" /locus_tag="AGROH133_05221" /db_xref="GeneID:10266800" CDS 1041409..1042071 /gene="gmk" /locus_tag="AGROH133_05221" /EC_number="2.7.4.8" /note="Essential for recycling GMP and indirectly, cGMP" /codon_start=1 /transl_table=11 /product="Guanylate kinase" /protein_id="YP_004278344.1" /db_xref="GI:325292480" /db_xref="GeneID:10266800" /translation="MVPVNNSPVTIARRGLMLVISSPSGAGKSTIARNLLDKDKNISL SVSVTTRPRRQSEIEGIHYHFISKRDFERLRDSDELLEWAEVHGNFYGTPREPVEVAM AAGRDMLFDIDWQGAEQLQDKMKADVVSIFILPPTMTELQSRLHRRAEDTEAVIQTRL LNSRAEIEHWRDYDYVILNDDLQAAFEAVEAIVKAERVRRDRRHGMFDFVRGLLAEEP QL" misc_feature 1041457..1041978 /gene="gmk" /locus_tag="AGROH133_05221" /note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and...; Region: GMPK; cd00071" /db_xref="CDD:73180" misc_feature order(1041472..1041474,1041490..1041492,1041538..1041540, 1041559..1041561,1041568..1041570,1041595..1041597, 1041664..1041666,1041679..1041681) /gene="gmk" /locus_tag="AGROH133_05221" /note="catalytic site [active]" /db_xref="CDD:73180" misc_feature order(1041472..1041474,1041490..1041492) /gene="gmk" /locus_tag="AGROH133_05221" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:73180" gene complement(1042099..1042713) /locus_tag="AGROH133_05222" /db_xref="GeneID:10266801" CDS complement(1042099..1042713) /locus_tag="AGROH133_05222" /note="Phospholipase/Carboxylesterase; Predicted esterase" /codon_start=1 /transl_table=11 /product="phospholipase/carboxylesterase family protein" /protein_id="YP_004278345.1" /db_xref="GI:325292481" /db_xref="GeneID:10266801" /translation="MESAGFHYKLHMPVGSPDCAVVLLHGSGRTEEDLALFGRAVFPN GILYAPRGIVPWENGFAFFRRKPDRQLDIDDLKHQAAGLCRFIEFVFQQTGQRPFLVG YSNGAIIAAETICQNRHLSRGAILLRPLSPRNNEHFPKLTGYPALLLAGAHDERRHRD DAPHLADQFSTAGADVVLDTLDTGHGWAADAADERLSRQWLRQH" misc_feature complement(1042111..1042713) /locus_tag="AGROH133_05222" /note="Predicted esterase [General function prediction only]; Region: COG0400" /db_xref="CDD:30749" gene complement(1042770..1043600) /gene="ksgA" /locus_tag="AGROH133_05223" /db_xref="GeneID:10266802" CDS complement(1042770..1043600) /gene="ksgA" /locus_tag="AGROH133_05223" /EC_number="2.1.1.-" /note="catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; Dimethyladenosine transferase (rRNA methylation)" /codon_start=1 /transl_table=11 /product="dimethyladenosine transferase" /protein_id="YP_004278346.1" /db_xref="GI:325292482" /db_xref="GeneID:10266802" /translation="MAAIDGLPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAG PLDGVTVIEVGPGPGGLTRAILSLGAKKVIAIERDSRCLPALAEIEAHYPGRLEVIEG DALKTDFEALVPAGEPVRIIANLPYNVGTQLLVNWLLPKEWPPFWLSMTLMFQKEVGQ RIVAEEGDNHYGRLGVLAGWRTVSEMAFDVPPQAFSPPPKVTSTVVHLLPKEKPLPCD VAKLEKVTEAAFGQRRKMLRQSVKSLGGEVLLEKAGIDATRRAETLSVEEFVTLANCL " misc_feature complement(1043187..1043453) /gene="ksgA" /locus_tag="AGROH133_05223" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1043229..1043231,1043289..1043297, 1043367..1043372,1043421..1043441)) /gene="ksgA" /locus_tag="AGROH133_05223" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1043600..1044679) /gene="pdxA" /locus_tag="AGROH133_05224" /db_xref="GeneID:10266803" CDS complement(1043600..1044679) /gene="pdxA" /locus_tag="AGROH133_05224" /EC_number="1.1.1.262" /note="catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); Pyridoxal phosphate biosynthesis protein" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase" /protein_id="YP_004278347.1" /db_xref="GI:325292483" /db_xref="GeneID:10266803" /translation="MSCARRRRSSTPDTRAGLSVTHASLPLALTQGDPAGIGPDIAIA AWAKRRENGVAPFIFIGDPDVVASRAALLGIPVNIETCEAADAVGVFDRAFPVLPLPV GFEVQAGQPHVGAAHATIKAIELAVALTVEGKASAVVTNPIAKSVLYEAGFGFPGHTE FLADLALRLTGKQVMPVMMIAGPKVRVVPVTIHIPVKDVPSALTEELIVTTCRIIDAD LRQKFGIEAPRLAVAGLNPHAGEDGALGTEDRDVVHPATIRLRKDGIDAFGPLPADTM FHDAARRRYDVAVCMYHDQALIPAKALGFDDSVNVTLGLPFIRTSPDHGTAFGIAGQG IASETSLVAALKMAAEISLRSRVGA" misc_feature complement(1043612..1044616) /gene="pdxA" /locus_tag="AGROH133_05224" /note="Pyridoxal phosphate biosynthetic protein PdxA; Region: PdxA; cl00873" /db_xref="CDD:186232" gene complement(1044642..1045589) /locus_tag="AGROH133_05225" /db_xref="GeneID:10266804" CDS complement(1044642..1045589) /locus_tag="AGROH133_05225" /EC_number="5.2.1.8" /note="SurA N-terminal domain; Parvulin-like peptidyl-prolyl isomerase" /codon_start=1 /transl_table=11 /product="survival protein surA precursor / peptidyl-prolyl cis-trans isomerase SurA" /protein_id="YP_004278348.1" /db_xref="GI:325292484" /db_xref="GeneID:10266804" /translation="MMNFGKTALRGAAFAFAIFAVPMAVAPFASQAFADSTVKIVVNK TPITNDDIARRVAFLKLQRQSGNLAEKAREQLVDEALKREEIGRVKMSVSTQEVDAAF ARFAANNKMNPQQLTQILSKAGVGADHFKAFIAVQMSWPRLVNARYGARGKMSNQDLV TRLRERGDKPVTTEYFLQQVIFVIPESKRNAITGKRKAEAEASRKRYPGCDQAMTFAA TMRDVAIKDLGRILAPELPEEWKPLVEKTKEGGTTGTRVTEKGVEYLAICKQRQVSDD YAAEMVFKSEDLMKAKGGENPNEKKYMDELRKKAQIVNT" misc_feature complement(<1044867..1045556) /locus_tag="AGROH133_05225" /note="Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]; Region: SurA; COG0760" /db_xref="CDD:31103" misc_feature complement(1045176..1045469) /locus_tag="AGROH133_05225" /note="SurA N-terminal domain; Region: SurA_N; pfam09312" /db_xref="CDD:150092" gene complement(1045887..1048268) /gene="ostA" /locus_tag="AGROH133_05228" /db_xref="GeneID:10266805" CDS complement(1045887..1048268) /gene="ostA" /locus_tag="AGROH133_05228" /note="Organic solvent tolerance protein OstA" /codon_start=1 /transl_table=11 /product="organic solvent tolerance protein" /protein_id="YP_004278349.1" /db_xref="GI:325292485" /db_xref="GeneID:10266805" /translation="MAVYDRGNIRRLWTALLTGAAVCAYLASSPVAFGQGGLLAPGSQ DDSKLLLTANELTYNRDSQRVIAKGVVRMHYSGYRMVAQQVEYNQQTGRVIAHGNIEL IEPGGNKIYADEMDVTDDFGQGFVNALRVETPDNTRIAGESAERLEGDRMVLNNGVYT ACLPCAERPEKAPLWQVKAERVIQDGKTHTIRLEKARLQLFGHSIAYVPFLTVPDNTV KRKSGFLFPQMSMTNKLGFGFGVPYFQVLSDTSDLTITPTYYTKQGLLLQAELRQRFE TGMHTLTIAGISQQSSDTFIAGTSDALNDQRGMVASKGNFSINPRWAFGWDAMVQTDN NFSRTYNLKGYKNDVQTNQIYLSGMSERNSFDARGYYFNVQDTDNSELKERKQAIVHP VMDYRYFVPDPIYGGELSLTTNFTSISRSTQDSYALGGYPRFNGLEGSYTRLSTEAEW KRTFTMDSGLQITPILAARGDALWTDMSAASFTSGGTSYAYQGMMQDDAALRGMVTGG LEVRYPWLFTALNSNHVIEPIAQIFVRPNEQYAGRFPNEDSQAFVFDATNLFERDKFS GFDRIEGGTRANIGLRYNGTFDNGYGIRAIAGQSFHLAGDNSFASYDLVNVGANSGLE SDRSDYVAMAAFDAPIGLSLSSSLRFDKDNLEINRSETGVSYSDRRLTGKLSYTQVKA QPQYGYNEDRDIVQASGTLRMDDNWSLFGSINYDLNGKFAAERRIGIAYQDECTILTV SYSDEGNITSSRQAANDWSINARLAFRTLGDVSIGSANEDWADMDIGWKPNNY" misc_feature complement(1045890..1048268) /gene="ostA" /locus_tag="AGROH133_05228" /note="Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]; Region: Imp; COG1452" /db_xref="CDD:31641" misc_feature complement(1046148..1047356) /gene="ostA" /locus_tag="AGROH133_05228" /note="Organic solvent tolerance protein; Region: OstA_C; pfam04453" /db_xref="CDD:190995" gene complement(1048268..1049356) /locus_tag="AGROH133_05231" /db_xref="GeneID:10266806" CDS complement(1048268..1049356) /locus_tag="AGROH133_05231" /note="Predicted permease YjgP/YjgQ family; Predicted permeases" /codon_start=1 /transl_table=11 /product="permease protein" /protein_id="YP_004278350.1" /db_xref="GI:325292486" /db_xref="GeneID:10266806" /translation="MIFSTLARYFLKRYLITAIWFLLGVSAIIYLADFSETARRMSSV PGYSVPGALGLTALRLPLILQQTIPFIALFVGMTTLISLNRRYELVVTRAAGVSAWQF ILPFVLGAVFLGILSVLVLNPIAAWGQNRSLSMEAGWRNEGSGGRQQDIIPWMRQSSG GQDTIIGAKSFEDNGTMLLDVVLIHLDKDGNIVSRQDAKSAKLEDGYWLLNGVAETRA GHVPVRQESTRISTNLRREFVQERMTQTETVAFFDLSHKIEVAKSFGLSSKALETQYH FLLSTPLLLVAMTLIAATVSLKFSRFAQSRSVILGGIVSGFVLYVVTVLVRAFGSGGV VPPTVAVWVPVIVALALGATILLHQEDG" misc_feature complement(1048271..1049350) /locus_tag="AGROH133_05231" /note="Predicted permeases [General function prediction only]; Region: COG0795; cl12074" /db_xref="CDD:189246" misc_feature complement(1048358..1049335) /locus_tag="AGROH133_05231" /note="Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739" /db_xref="CDD:190734" gene complement(1049353..1050522) /locus_tag="AGROH133_05238" /db_xref="GeneID:10266807" CDS complement(1049353..1050522) /locus_tag="AGROH133_05238" /note="Predicted permease YjgP/YjgQ family; Predicted permeases" /codon_start=1 /transl_table=11 /product="permease protein" /protein_id="YP_004278351.1" /db_xref="GI:325292487" /db_xref="GeneID:10266807" /translation="MKLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDTGQ SMGSFMALATMILPTLIPVVLPFALVIGITQTFTAMNNDSELAIIDAAGSSRSVMFRP VIILAAVLSALSFTITNFIEPPARNSARQMVAAAYADLLSSVIEEKTFRAVQDGLYVQ IAQRQGRILKGLFVADRRDPNFDLIYYAKEGMIDESGTSLTMRDGEVQQKTPDGKVSI VKFLSYAFDLSTMSEKQTSEPSLSPGDASLGFLLSPDENNASYKRSPESFRSELHKRL SDWMFAFAFALISLVIAADARSHREARMHPMVAALVTAFMLRWLGFYVTNQVKQSAAF IPLVYAVPGLSGAAAAFILITGRKPRMPKIIADTASRLRRLFSSRLARSSGSGNA" misc_feature complement(1049446..1050522) /locus_tag="AGROH133_05238" /note="Predicted permeases [General function prediction only]; Region: COG0795; cl12074" /db_xref="CDD:189246" misc_feature complement(1049461..1050504) /locus_tag="AGROH133_05238" /note="Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739" /db_xref="CDD:190734" gene 1050728..1052329 /gene="pepA" /locus_tag="AGROH133_05245" /db_xref="GeneID:10266808" CDS 1050728..1052329 /gene="pepA" /locus_tag="AGROH133_05245" /EC_number="3.4.11.1" /note="catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; Leucyl aminopeptidase" /codon_start=1 /transl_table=11 /product="leucine aminopeptidase" /protein_id="YP_004278352.1" /db_xref="GI:325292488" /db_xref="GeneID:10266808" /translation="MSAFKECEPLKMQGCAGGRKGHDRAHTQVIHEEQENMSAKFDIS FANSASLENTLAVVLQASGEAQAAAGASEADPGGVLERAAKISGFSAKSMTTLDVIAP QGSGADRLLVIGLGKPAKLVAHDWLRAGGTAAANFRKADKVAVYLDAPGVDVGAQAAA DFALGLLLRAYSFDAYKTKKKSDDEKSPKKVEIVIVTAVHQEAEKAFAVSEAVAGGVV LARDLVNLPPNVLGPVEFAEKAEELKKLGVEVEILGEKELKKLGMNALLGVAQGSARP PRLAVMQWNGGSKKDEPIAFVGKGVVFDTGGISLKPGLNMEDMKGDMGGAAAVTGLMH TLAARKAKANVIGVIGLVENMPDGNAQRPGDIVTSMSGQTIEIINTDAEGRLVLADAL WYTKERFNPKFMINLATLTGAITVALGNLQAGLFSNDDELAERLSQAGDVTAEKLWRM PLGKDYDKIIDSKFADMKNSSGRLAGSVTAAQFLKRFVGETPWAHLDIAGTAMGSPMT EINQSWGSGYGVRLLNELVRAHYED" misc_feature 1050845..1052320 /gene="pepA" /locus_tag="AGROH133_05245" /note="multifunctional aminopeptidase A; Provisional; Region: PRK00913" /db_xref="CDD:179165" misc_feature 1050953..1052308 /gene="pepA" /locus_tag="AGROH133_05245" /note="Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein...; Region: Peptidase_M17; cd00433" /db_xref="CDD:48344" misc_feature order(1050983..1050988,1051025..1051027,1051052..1051054, 1051097..1051099,1051400..1051402,1051406..1051414, 1051541..1051543,1051547..1051549,1051634..1051636, 1051652..1051654,1051667..1051669,1051676..1051678, 1051685..1051690,1051784..1051786,1051790..1051801, 1051805..1051807,1051811..1051825,1051841..1051843, 1051847..1051849,1051859..1051861,1051970..1051984, 1051991..1051993,1052069..1052074,1052078..1052080, 1052093..1052095,1052099..1052104,1052117..1052119, 1052123..1052125,1052150..1052155,1052159..1052161, 1052264..1052266) /gene="pepA" /locus_tag="AGROH133_05245" /note="interface (dimer of trimers) [polypeptide binding]; other site" /db_xref="CDD:48344" misc_feature order(1051622..1051624,1051637..1051639,1051658..1051660, 1051691..1051693,1051868..1051870,1051874..1051876, 1051880..1051882,1051955..1051957) /gene="pepA" /locus_tag="AGROH133_05245" /note="Substrate-binding/catalytic site; other site" /db_xref="CDD:48344" misc_feature order(1051622..1051624,1051637..1051639,1051691..1051693, 1051868..1051870,1051874..1051876) /gene="pepA" /locus_tag="AGROH133_05245" /note="Zn-binding sites [ion binding]; other site" /db_xref="CDD:48344" gene 1052355..1052804 /gene="holC" /locus_tag="AGROH133_05246" /db_xref="GeneID:10266809" CDS 1052355..1052804 /gene="holC" /locus_tag="AGROH133_05246" /EC_number="2.7.7.7" /note="binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III, chi subunit" /codon_start=1 /transl_table=11 /product="DNA polymerase III chi subunit" /protein_id="YP_004278353.1" /db_xref="GI:325292489" /db_xref="GeneID:10266809" /translation="MTEILFYHLTESKLEDALPPLLEKSLERGWKVAIQTVDEERRDF LDTHLWTFRDDSFLPHATDTSAAPQNQPILLTASNANGNEASVRFLVDGAEPPAVEGY ERIVFMFDGYDAYQLEMARNHWKRLKTEGHALTYWQQSPEGRWQKKA" misc_feature 1052355..1052780 /gene="holC" /locus_tag="AGROH133_05246" /note="DNA polymerase III chi subunit, HolC; Region: DNA_pol3_chi; cl01106" /db_xref="CDD:194036" gene 1052872..1053990 /locus_tag="AGROH133_05247" /db_xref="GeneID:10266810" CDS 1052872..1053990 /locus_tag="AGROH133_05247" /note="GGDEF: diguanylate cyclase (GGDEF) domain; c-di-GMP synthetase (diguanylate cyclase, GGDEF domain)" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004278354.1" /db_xref="GI:325292490" /db_xref="GeneID:10266810" /translation="MSRIRHSCLIRPTGDGRWRLPQTKQQKDIIMGQAISRPDGEIER LVAVRSIMSVKNAEMPELEVLSRLGQGVFDVPRAAVHIVDEDWLHIAEQAGMQLSECP RDLSICNRVIARQDVVVISDLTQHPDFRFMSYVKGGPGLRSYAGAPIELEPGLVVGAF CLVDTVPRKFSQSEIDNLKHFALLAAALLRLQKANFTMSLAERELRDAVMTDPLTGFY NRKALEAIVDGQLGAALRENEAFGVLYLDLDGFKAINDTFGHPAGDRVLTAAADRIRN SIRSEDTVVRMGGDEFAIFIPRPSRSEVMNGLADRLLAAFREPFDVDGQAVGARLSIG GAIAPQAGADRATLLRSVDEALYQAKKSGRDRFVSRAL" misc_feature 1053058..1053414 /locus_tag="AGROH133_05247" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 1053499..1053975 /locus_tag="AGROH133_05247" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1053610..1053612,1053739..1053741) /locus_tag="AGROH133_05247" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1053625..1053627,1053634..1053639,1053649..1053651, 1053661..1053663,1053727..1053729,1053733..1053744) /locus_tag="AGROH133_05247" /note="active site" /db_xref="CDD:143635" misc_feature order(1053715..1053717,1053802..1053804) /locus_tag="AGROH133_05247" /note="I-site; other site" /db_xref="CDD:143635" gene complement(1054033..1054959) /gene="gal" /locus_tag="AGROH133_05248" /db_xref="GeneID:10266811" CDS complement(1054033..1054959) /gene="gal" /locus_tag="AGROH133_05248" /EC_number="1.1.1.48" /note="Oxidoreductase family, NAD-binding Rossmann fold; Predicted dehydrogenases and related proteins" /codon_start=1 /transl_table=11 /product="D-galactose 1-dehydrogenase" /protein_id="YP_004278355.1" /db_xref="GI:325292491" /db_xref="GeneID:10266811" /translation="MSATKLAIVGVGKIVRDQHLPAIAGNPDFELICTASRHGTVDGV ASYGTIETMLEAVEDIEAVSLCMPPQYRYEAAYAALNAGKHVFLEKPPGATLSEVQDL VRLADSKGLSLFASWHSRYAPGVEAAKAFLASTKIDSVHVIWKEDVRHWHPNQAWIWQ AGGLGVFDPGINALSIITHILPRALFLTKATLEFPENRDAPIAAELHFSDVTKMPVRA EFDWRQTGKQSWDIVAETAAGQMVLSEGGAKLSINGEQAVSEPEREYPALYERFAEII KAGRSDVDLAPLTHVADAFLLGRHKFVDSFYD" misc_feature complement(1054060..1054959) /gene="gal" /locus_tag="AGROH133_05248" /note="Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:31017" misc_feature complement(1054618..1054947) /gene="gal" /locus_tag="AGROH133_05248" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 1055712..1057646 /locus_tag="AGROH133_05249" /db_xref="GeneID:10266812" CDS 1055712..1057646 /locus_tag="AGROH133_05249" /note="EAL domain; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor" /protein_id="YP_004278356.1" /db_xref="GI:325292492" /db_xref="GeneID:10266812" /translation="MELIAGQAAASAAELPFLLLQAAALVGMVSVLILLQRNIALDDA RYKIYYGIIFGVTGFLLTLLVSEFIKLPSKPYIRSDLLFLAGVLGSWQGGLISLALVS AGRFLFGGPALFGAAFLDMSIISAFGMAMYGWMRRRSLTELGVREVFGVFAVRIFAAL FAVCVTYSLSMINQDVFLSNVGRRIFGSLVGLPMIACLFLLLRSEARAREEARKRDAA ARTDSLTGLPNRRALKDHIEVVMRQEPAVPHALLLIEIVNMADVAACQGEDWGDLFWP RLAQEICNDDNGLLSSSNAPRSFMFGDTTLAVVMSGISLEKSESTRLIMRLHDGLSTF SRSADPEPVPHLKIGAANLDKLSRQNVASFLRQLSLALRGSENPVQIFPFSFADKATR DEGVRQMLVNWIRSGKPPIFYQPKFEMHNLRMIGAEALLRAVDACGQPLSPYYVLEIA ERHRLLVEFEWSTIEAVVRDLIDLRGLDPDFHLAVNISASSFATAGFGERVVAFLNEM GVPAHRLSIEVTEMSRIPAIDIVQQNFDRLSEAGVRLALDDFGTGYAALTLLARFPFE EVKIDHWMTSRLEQSRFREAIALAFESAERYGATLVTEGIETEEQSRLLMQMGIRFGQ GYLYSPAVPLERLQPRRECA" misc_feature 1056372..>1056764 /locus_tag="AGROH133_05249" /note="Class III nucleotidyl cyclases; Region: Nucleotidyl_cyc_III; cl11967" /db_xref="CDD:196290" misc_feature 1056903..1057619 /locus_tag="AGROH133_05249" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene complement(1057672..1059555) /locus_tag="AGROH133_05256" /db_xref="GeneID:10266813" CDS complement(1057672..1059555) /locus_tag="AGROH133_05256" /note="ABC transporter related; ATPase components of ABC transporters with duplicated ATPase domains" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_004278357.1" /db_xref="GI:325292493" /db_xref="GeneID:10266813" /translation="MITITDLSARIAGRLLLDHASVTLPAGVKVGLVGRNGAGKSTLF RVITGDFSAESGSVTIPKLARIGQVAQEAPGTEESLISIVLSADKERSALLAEAETAT DPHRIAEIQVRLVDIDAHSAEARASSILAGLGFDHEAQLRPASSFSGGWRMRVALASV LFAEPDLLLLDEPTNYLDLEGTLWLEDYIRRYPHTVIIISHDRDLLNNAVNSIVHLDQ KKLTFYRGGYDQFERQKAEADELQMKAKVKNDAARKHLQSFIDRFRAKATKARQAQSR IKALERMGTVAAVIEDHVQPITFPEPEKQPASPIVAINGGAVGYEPGKSILKQLNLRI DNDDRIALLGSNGNGKSTFAKFISGRLAPQAGDLRIAPGLKIGFFAQHQLDDLVPDQT PVEHVRKLMPLASEAQVRARVAQMGLATEKMATAAKDLSGGEKARLLMGLAAFHAPNL LILDEPTNHLDIDSRRALIEALNDYNGAVILISHDRHLIEATVDRLWLVADGTVKTFE GDMEEYRDLVVSSGKKKEEKTEAAADQTSKADQRKANAEKRAQLAPLKKKINEIESLT AKLEKMIQALDKELADPALYEKAPAKAAQKVKERGEAASKLSDAEEQWLMLSSEYEDA MTQ" misc_feature complement(1058008..1059555) /locus_tag="AGROH133_05256" /note="ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488" /db_xref="CDD:30834" misc_feature complement(1058896..1059516) /locus_tag="AGROH133_05256" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1059433..1059456) /locus_tag="AGROH133_05256" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1058953..1058955,1059040..1059045, 1059430..1059438,1059442..1059447)) /locus_tag="AGROH133_05256" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1059301..1059309) /locus_tag="AGROH133_05256" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1059088..1059117) /locus_tag="AGROH133_05256" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1059040..1059057) /locus_tag="AGROH133_05256" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1059022..1059033) /locus_tag="AGROH133_05256" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1058947..1058967) /locus_tag="AGROH133_05256" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature complement(1058680..1058916) /locus_tag="AGROH133_05256" /note="ABC transporter; Region: ABC_tran_2; pfam12848" /db_xref="CDD:193322" misc_feature complement(1058047..1058625) /locus_tag="AGROH133_05256" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" misc_feature complement(1057717..>1057896) /locus_tag="AGROH133_05256" /note="valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729" /db_xref="CDD:180225" gene complement(1059626..1060672) /locus_tag="AGROH133_05257" /db_xref="GeneID:10266814" CDS complement(1059626..1060672) /locus_tag="AGROH133_05257" /note="GGDEF: diguanylate cyclase (GGDEF) domain; FOG: GGDEF domain" /codon_start=1 /transl_table=11 /product="diguanylate-cyclase" /protein_id="YP_004278358.1" /db_xref="GI:325292494" /db_xref="GeneID:10266814" /translation="MTSTAGDKKREKARNGLVFTKIAQFIDKMNIAPLPRNYELIYEI LSGHNPAMGRDILALGNAPQQHEIDIVGQRHNLPGFSKIEAEQMAATAFETLKQISAR LEAGLQRTETFIASLSGQDHSELPATERLAQLMGDIHEEQTSLRHFVSMGLMKIREVE KSRTDLQASSLRDALTALPNRAAFLEKLGDLFSGAQGASATSLVLLNIDHFREINGKY GPTAGNKALRRLAALFRKAIKKDDFVARIGGNEFAFLFAGVSQNTAEAIAERLRQNVE ALRFVTSEGDGEHLTVSVGVAAVDCTATSAEFFSHAELALLSARCGTRNCVIGYSRDV AQRSRSSYLAQLGC" misc_feature complement(1059689..1060162) /locus_tag="AGROH133_05257" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(1059923..1059925,1060052..1060054)) /locus_tag="AGROH133_05257" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(1059920..1059931,1059935..1059937, 1060001..1060003,1060013..1060015,1060025..1060030, 1060037..1060039)) /locus_tag="AGROH133_05257" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(1059863..1059865,1059947..1059949)) /locus_tag="AGROH133_05257" /note="I-site; other site" /db_xref="CDD:143635" gene 1060929..1061624 /gene="ligE" /locus_tag="AGROH133_05258" /db_xref="GeneID:10266815" CDS 1060929..1061624 /gene="ligE" /locus_tag="AGROH133_05258" /note="Glutathione S-transferase, C-terminal-like; Predicted glutathione S-transferase" /codon_start=1 /transl_table=11 /product="lignin degradation protein" /protein_id="YP_004278359.1" /db_xref="GI:325292495" /db_xref="GeneID:10266815" /translation="MTTSRTLYSLCGSDSARPFSPHCWKTVLSLAHKGLEFEERPLPF TVIPTVEDGFSRTVPILRDGDQLVSDSFEIALYLDEAYPERPSLFNGEGGKAMARFVE SWSQTVLHPAITRIAVLDIHNMLDEPDRLYFRDSRTKALGRTLEDVVANREAEIAAFP ALLAPIRRMLGFQPFIGGSSPLFADYIVFGALQWARITTGADLFSENDPVRDWFEGCL DLHDARGRSVTAA" misc_feature 1060941..1061177 /gene="ligE" /locus_tag="AGROH133_05258" /note="GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH...; Region: GST_N_etherase_LigE; cd03038" /db_xref="CDD:48587" misc_feature 1060977..1061600 /gene="ligE" /locus_tag="AGROH133_05258" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature order(1060992..1060994,1060998..1061003,1061007..1061012, 1061019..1061024,1061142..1061144,1061151..1061156) /gene="ligE" /locus_tag="AGROH133_05258" /note="putative C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48587" misc_feature order(1060992..1060994,1061097..1061105,1061136..1061141) /gene="ligE" /locus_tag="AGROH133_05258" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48587" misc_feature order(1061097..1061099,1061133..1061138,1061142..1061147, 1061154..1061156) /gene="ligE" /locus_tag="AGROH133_05258" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48587" misc_feature 1061217..1061588 /gene="ligE" /locus_tag="AGROH133_05258" /note="GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH...; Region: GST_C_etherase_LigE; cd03202" /db_xref="CDD:48129" misc_feature order(1061223..1061225,1061244..1061246,1061475..1061477, 1061484..1061489,1061496..1061498,1061508..1061510) /gene="ligE" /locus_tag="AGROH133_05258" /note="putative N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48129" misc_feature order(1061223..1061228,1061235..1061237,1061421..1061423) /gene="ligE" /locus_tag="AGROH133_05258" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48129" misc_feature order(1061244..1061246,1061256..1061261,1061268..1061273, 1061499..1061501,1061508..1061510) /gene="ligE" /locus_tag="AGROH133_05258" /note="putative lignin/substrate binding pocket (H-site); other site" /db_xref="CDD:48129" gene 1061728..1062150 /gene="ndk" /locus_tag="AGROH133_05259" /db_xref="GeneID:10266816" CDS 1061728..1062150 /gene="ndk" /locus_tag="AGROH133_05259" /EC_number="2.7.4.6" /note="catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate" /codon_start=1 /transl_table=11 /product="Nucleoside diphosphate kinase" /protein_id="YP_004278360.1" /db_xref="GI:325292496" /db_xref="GeneID:10266816" /translation="MAIERTFSMIKPDATKRNLTGAITKVFEDNGLRIVASKRVWMSK REAEGFYAVHKERPFFGELVEGMTSGPTIVQVLEGENAILKNREIMGATNPAQAAEGT IRKSFALSIGENSVHGSDAPETAAQEIAYWFAETEIVG" misc_feature 1061737..1062126 /gene="ndk" /locus_tag="AGROH133_05259" /note="Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413" /db_xref="CDD:58528" misc_feature order(1061758..1061760,1061878..1061880,1061902..1061904, 1061986..1061988,1062004..1062006,1062037..1062039, 1062067..1062069,1062076..1062078,1062082..1062087, 1062109..1062111) /gene="ndk" /locus_tag="AGROH133_05259" /note="active site" /db_xref="CDD:58528" misc_feature order(1061770..1061772,1061785..1061793,1061800..1061802, 1061809..1061811,1061836..1061844) /gene="ndk" /locus_tag="AGROH133_05259" /note="multimer interface [polypeptide binding]; other site" /db_xref="CDD:58528" gene complement(1062445..1062957) /locus_tag="AGROH133_05260" /db_xref="GeneID:10266817" CDS complement(1062445..1062957) /locus_tag="AGROH133_05260" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278361.1" /db_xref="GI:325292497" /db_xref="GeneID:10266817" /translation="MKGITIPLLAITMVLGLSGCQRDEPRDVAKVSGRMFVFNYRVAI ATYLVTLQRIAPIRDGSTLEATFENPRGGTELTTREKIFPADEKIAVQSPPVECVKQD RPYKVTIRIKGPEGDVLQTIETTIRSDTDQSLLPAKPLTVGPLYTPNPDVFKADGTTD MRPVEGCPAS" gene complement(1062954..1063505) /locus_tag="AGROH133_05261" /db_xref="GeneID:10266818" CDS complement(1062954..1063505) /locus_tag="AGROH133_05261" /note="Protein of unknown function DUF1470; Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278362.1" /db_xref="GI:325292498" /db_xref="GeneID:10266818" /translation="MTFRWTEHRFAGGALALDVANSVILRADAAKSVDRFAVPEQIAT FAEASTRLGAERDRFPALIAPEADMRQVFLDLREAIDDYFRSSMTSGDDDDGRLAGLL FACGTALRLFPLRESLANATAHSALSLLAAETRKRLRICGNCGWLFIDRSKNRSRIWC DMTVCGNRQKASRHYHRKKEAQA" misc_feature complement(1062963..1063505) /locus_tag="AGROH133_05261" /note="Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only]; Region: COG5516" /db_xref="CDD:35075" misc_feature complement(<1063251..1063472) /locus_tag="AGROH133_05261" /note="Protein of unknown function (DUF1470); Region: DUF1470; pfam07336" /db_xref="CDD:191729" misc_feature complement(1062972..1063097) /locus_tag="AGROH133_05261" /note="CGNR zinc finger; Region: zf-CGNR; pfam11706" /db_xref="CDD:192799" gene 1063565..1064461 /locus_tag="AGROH133_05262" /db_xref="GeneID:10266819" CDS 1063565..1064461 /locus_tag="AGROH133_05262" /note="Bacterial inner-membrane translocator; Branched-chain amino acid ABC-type transport system, permease components" /codon_start=1 /transl_table=11 /product="Branched-chain amino acid ABC-type transport system, membrane spanning protein" /protein_id="YP_004278363.1" /db_xref="GI:325292499" /db_xref="GeneID:10266819" /translation="MAYFLQQLLNAVPVASLYAVLAFGYAIAFSVTKRADVTYGAIFA FAGQTCLLFADFGWNRLWLILPATLALGAGAGLFGGLWAAAFIGRAVMRPLAKASPNA VTVASIGVLIALTESARLAAGTRQLWLPPLLSEPVRFWADGSFAVTLTSMQMLNTAVF CLLVLTGTFYLQRSGFGRRWKAVSDDAFAASLCGVNAGRVFLLSYCAAGLLAAIAGVL ATFYYGTMDFGAGLVFGLKVVLISAAGGYASPLVCALGAAAVGFAETLWVGYGPVIWR DAAVLALLVGWLIVMRSRVEAP" misc_feature 1063595..1064437 /locus_tag="AGROH133_05262" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature 1064126..1064182 /locus_tag="AGROH133_05262" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene complement(1064522..1064977) /gene="moaE" /locus_tag="AGROH133_05271" /db_xref="GeneID:10266820" CDS complement(1064522..1064977) /gene="moaE" /locus_tag="AGROH133_05271" /note="Molybdopterin biosynthesis MoaE" /codon_start=1 /transl_table=11 /product="Molybdopterin converting factor, large subunit" /protein_id="YP_004278364.1" /db_xref="GI:325292500" /db_xref="GeneID:10266820" /translation="MQPTVRVQAQDFDAAEETRRLTEGDKSIGAVVAFTGLCRDDGGT LAALELEHYPGMAEAEMTRIAQLAIERFDLLGLTAIHRHGKIATGENIVLVIAASRHR QAAFDGANFVMDYLKTSAPFWKKEHGKDGTKGDWVAAKTTDDTAKDKWR" misc_feature complement(1064567..1064944) /gene="moaE" /locus_tag="AGROH133_05271" /note="MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoaE; cd00756" /db_xref="CDD:58647" misc_feature complement(order(1064636..1064638,1064648..1064650, 1064672..1064674,1064678..1064680,1064705..1064707, 1064861..1064863,1064867..1064869,1064873..1064887, 1064891..1064893,1064912..1064914,1064924..1064926)) /gene="moaE" /locus_tag="AGROH133_05271" /note="MoaE homodimer interface [polypeptide binding]; other site" /db_xref="CDD:58647" misc_feature complement(order(1064570..1064572,1064606..1064614, 1064618..1064620,1064624..1064629,1064735..1064737, 1064789..1064791,1064801..1064803,1064810..1064812, 1064819..1064821,1064825..1064827)) /gene="moaE" /locus_tag="AGROH133_05271" /note="MoaD interaction [polypeptide binding]; other site" /db_xref="CDD:58647" misc_feature complement(order(1064606..1064608,1064627..1064629)) /gene="moaE" /locus_tag="AGROH133_05271" /note="active site residues [active]" /db_xref="CDD:58647" gene complement(1064982..1065239) /gene="moaD" /locus_tag="AGROH133_05272" /db_xref="GeneID:10266821" CDS complement(1064982..1065239) /gene="moaD" /locus_tag="AGROH133_05272" /note="Molybdopterin converting factor, small subunit" /codon_start=1 /transl_table=11 /product="molybdopterin converting factor small subunit" /protein_id="YP_004278365.1" /db_xref="GI:325292501" /db_xref="GeneID:10266821" /translation="MMARIVYFAWVREKIGTAEEELDIPSSVTTAGELIAYLSTLGEN YEAAFEFPDVIRVAVNQEHVEHDESIAGAREIGIFPPMTGG" misc_feature complement(1064985..1065230) /gene="moaD" /locus_tag="AGROH133_05272" /note="Ubiquitin domain of MoaD-like proteins; Region: MoaD; cd00754" /db_xref="CDD:176354" misc_feature complement(order(1064985..1064987,1064994..1065002, 1065015..1065017,1065060..1065062,1065201..1065206, 1065210..1065218)) /gene="moaD" /locus_tag="AGROH133_05272" /note="MoaE interaction surface [polypeptide binding]; other site" /db_xref="CDD:176354" misc_feature complement(order(1064985..1064987,1064994..1064996, 1065000..1065002,1065201..1065206,1065213..1065218)) /gene="moaD" /locus_tag="AGROH133_05272" /note="MoeB interaction surface [polypeptide binding]; other site" /db_xref="CDD:176354" misc_feature complement(1064985..1064987) /gene="moaD" /locus_tag="AGROH133_05272" /note="thiocarboxylated glycine; other site" /db_xref="CDD:176354" gene complement(1065236..1065823) /gene="pgsA" /locus_tag="AGROH133_05273" /db_xref="GeneID:10266822" CDS complement(1065236..1065823) /gene="pgsA" /locus_tag="AGROH133_05273" /EC_number="2.7.8.5" /note="CDP-alcohol phosphatidyltransferase; Phosphatidylglycerophosphate synthase" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase" /protein_id="YP_004278366.1" /db_xref="GI:325292502" /db_xref="GeneID:10266822" /translation="MASRAYSIPNLLTYARILAVPVIVLCFYIEGKLESSDFARWTAL WLFIVASLTDFLDGYLARIWNQTSNIGRMLDPIADKLLVASVLLLMAADGTIAGWSLW AAITILCREILVSGLREYLAALKVSVPVTRIAKWKTTIQMVAIAFLLAGPAGDKVLPY TTEMGITLLWLAAALTMYTGYDYFKAGLKHIVDEE" misc_feature complement(1065242..1065802) /gene="pgsA" /locus_tag="AGROH133_05273" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene complement(1065926..1067977) /gene="uvrC" /locus_tag="AGROH133_05277" /db_xref="GeneID:10266823" CDS complement(1065926..1067977) /gene="uvrC" /locus_tag="AGROH133_05277" /note="The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; Nuclease subunit of the excinuclease complex" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit C" /protein_id="YP_004278367.1" /db_xref="GI:325292503" /db_xref="GeneID:10266823" /translation="MNGKKLPDGGILFDETDDEDDDANLAATDAAEAPRDVAGMDWNA GWKNESGLKGMDLIGEFVKHLPNSPGVYRMFNEANDVLYVGKARSLKKRVGNYAQGRV HSNRIAQMVRLTAHMEFVTTRTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITA DNRAPAIFKHRGARARKGDYFGPFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPC LLYQIKRCSGPCTHEVSDEGYAELVKEAKDFLSGKSQSVKTAIARQMNEAAEDLDFER AAVYRDRLAALSHVQSHQGINPAGIEEADVFAIHHEGGISCIQVFFFRTGQNWGNRAY FPKADPSLPGSEILNAFLAQFYDDKPVPKQILLSETVEEQELLAAALGEKAGHKVTIS VPQRGEKKDITDHVLANAREAHGRKLAETSSQARLLKGFAETFNLPYVPRRIEIYDNS HIMGTNAVGGMVVAGPEGFVKNQYRKFNIKSTDITPGDDFGMMREVMTRRFSRLLKEE GKPDRAQTLTPTPEEAADMPFPAWPDVILIDGGQGQMTAVRAILDELDIRDSVIAIGV AKGVDREAGRERFFADGRSDFSLPPRDPVLYFIQRMRDEAHRFAIGSHRARRKKEMVR NPLDEISGIGPGRKRSLLQHFGTAKAVSRAGLNDLMNVTGISEAVARQIYNHFHESSG D" misc_feature complement(1065938..1067815) /gene="uvrC" /locus_tag="AGROH133_05277" /note="excinuclease ABC subunit C; Validated; Region: uvrC; PRK00558" /db_xref="CDD:179065" misc_feature complement(1067531..1067773) /gene="uvrC" /locus_tag="AGROH133_05277" /note="GIY-YIG catalytic domain; Region: GIY-YIG; cl01061" /db_xref="CDD:194023" misc_feature complement(1067114..1067215) /gene="uvrC" /locus_tag="AGROH133_05277" /note="UvrB/uvrC motif; Region: UVR; pfam02151" /db_xref="CDD:145355" misc_feature complement(1066145..1066684) /gene="uvrC" /locus_tag="AGROH133_05277" /note="UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459" /db_xref="CDD:149497" misc_feature complement(1065941..1066090) /gene="uvrC" /locus_tag="AGROH133_05277" /note="Helix-hairpin-helix motif; Region: HHH_2; pfam12826" /db_xref="CDD:193301" gene complement(1067974..1068762) /locus_tag="AGROH133_05278" /db_xref="GeneID:10266824" CDS complement(1067974..1068762) /locus_tag="AGROH133_05278" /EC_number="1.1.1.100" /note="Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="short chain dehydrogenase" /protein_id="YP_004278368.1" /db_xref="GI:325292504" /db_xref="GeneID:10266824" /translation="MSKCRSAVKENIPKTVLITGAARRLGRAIATDLASHGFAIAVHA NASMGQAEEFANEIRQKGGKAVAVQADLTQSSPTMALVEQASSALGPIGVVVNNASIF LDDSAETPDPAIFDAHFSVHVRAPSLIAAAFVQQLPQDKSGLIVNIIDQRVLALTPRF YSYTLSKSALWTATRTMAQSFAPRVRVNAIGPGPSFKSERQAPEDFQAQIDGLILKRG PEPDEFGRTIRFLFDTPSVTGQMIALDGGQHLGWETPDVAEIPE" misc_feature complement(1068010..1068723) /locus_tag="AGROH133_05278" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557" /db_xref="CDD:180126" misc_feature complement(1068022..1068723) /locus_tag="AGROH133_05278" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(1068178..1068189,1068262..1068264, 1068274..1068276,1068313..1068321,1068463..1068471, 1068625..1068633,1068688..1068690,1068694..1068699, 1068703..1068705)) /locus_tag="AGROH133_05278" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(1068262..1068264,1068274..1068276, 1068313..1068315,1068397..1068399)) /locus_tag="AGROH133_05278" /note="active site" /db_xref="CDD:187535" gene 1069110..1069766 /gene="ropB" /locus_tag="AGROH133_05279" /db_xref="GeneID:10266825" CDS 1069110..1069766 /gene="ropB" /locus_tag="AGROH133_05279" /note="Outer membrane protein, OmpA-like, transmembrane region; Opacity protein and related surface antigens" /codon_start=1 /transl_table=11 /product="outer membrane protein" /protein_id="YP_004278369.1" /db_xref="GI:325292505" /db_xref="GeneID:10266825" /translation="MRIFVATIMASTIAAAGFSAAHAADAVNDVPQAPVAYDQPAPVK NWTGAYLGGTANYDWGRFSSSNDGRDAKGAGGGIYGGYNMQNGQIVYGAEADVNLGRE RGSAGTVGGNAVEGKQGVNGSLRARVGYDMNPFLLYGTAGLAASDNKVRDATSKDSAT ALGYTVGAGVEAMVTDNITARLEYRYSDYQKKDYSLDSGAFSRGFDDHSVKAGIGVKF " misc_feature 1069227..1069763 /gene="ropB" /locus_tag="AGROH133_05279" /note="Surface antigen; Region: Surface_Ag_2; cl01155" /db_xref="CDD:194055" gene complement(1069882..1070478) /locus_tag="AGROH133_05281" /db_xref="GeneID:10266826" CDS complement(1069882..1070478) /locus_tag="AGROH133_05281" /EC_number="2.5.1.18" /note="Glutathione S-transferase, C-terminal-like" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase" /protein_id="YP_004278370.1" /db_xref="GI:325292506" /db_xref="GeneID:10266826" /translation="MELLYSVTSPYSAKVRMAARHLGIDITNVAVNTNAEPATLVDNN PLGKIPVLLLDDGGSVYDSVAIMHYLDRLSGGKLYPKKNGKRTEAEILEALCDGIMDC LLAIVYERRSRPEDRVHQPWIDKQWKKAVKGLDHLNANLPKTGKKLHGGHFALAALIG YLDLRFAGEWAEGHEALAQWPETFGKRFEAYKDMRAAA" misc_feature complement(1069885..1070478) /locus_tag="AGROH133_05281" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature complement(1070266..1070478) /locus_tag="AGROH133_05281" /note="GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of...; Region: GST_N_3; cd03049" /db_xref="CDD:48598" misc_feature complement(order(1070275..1070280,1070287..1070289, 1070416..1070421,1070428..1070433,1070437..1070442, 1070446..1070448)) /locus_tag="AGROH133_05281" /note="putative C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48598" misc_feature complement(order(1070290..1070295,1070329..1070337, 1070446..1070448)) /locus_tag="AGROH133_05281" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48598" misc_feature complement(order(1070275..1070277,1070284..1070289, 1070293..1070298,1070335..1070337)) /locus_tag="AGROH133_05281" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48598" misc_feature complement(1069927..1070214) /locus_tag="AGROH133_05281" /note="GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of...; Region: GST_C_6; cd03205" /db_xref="CDD:48132" misc_feature complement(order(1069996..1069998,1070008..1070010, 1070017..1070022,1070029..1070031,1070188..1070190, 1070209..1070211)) /locus_tag="AGROH133_05281" /note="putative N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48132" misc_feature complement(order(1070113..1070115,1070197..1070199, 1070206..1070211)) /locus_tag="AGROH133_05281" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48132" misc_feature complement(order(1069996..1069998,1070005..1070007, 1070161..1070166,1070173..1070178,1070188..1070190)) /locus_tag="AGROH133_05281" /note="putative substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48132" gene complement(1070512..1071285) /gene="rns" /locus_tag="AGROH133_05282" /db_xref="GeneID:10266827" CDS complement(1070512..1071285) /gene="rns" /locus_tag="AGROH133_05282" /EC_number="3.1.27.1" /note="Ribonuclease T2 family; Ribonuclease I" /codon_start=1 /transl_table=11 /product="ribonuclease T2 family protein" /protein_id="YP_004278371.1" /db_xref="GI:325292507" /db_xref="GeneID:10266827" /translation="MKRYAGFIALGLLSLAALWFSRENPAPTGSAINRQTQSQTQPAG NSRPETSQPEIARRDTGKNPVPAGTGFDFYVLSLSWSPAFCASSEGSGNRQQCGSNRR YGFVVHGLWPQNETGYPEFCTSSEPDRVPDAIGRTMFDIMPSMGLIGHQWRKHGACSG LSQKDYFSATRTAFEAVKLPETIASGAKGATLSAEAIETAFTDANPGMSKRGVSISCD GKRLEEVRICLNKDMTFRDCPELDRKGCRVSATEIVPIR" misc_feature complement(1070527..1071075) /gene="rns" /locus_tag="AGROH133_05282" /note="Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf...; Region: RNase_T2_prok; cd01062" /db_xref="CDD:29474" misc_feature complement(order(1070608..1070610,1070953..1070955, 1071061..1071063)) /gene="rns" /locus_tag="AGROH133_05282" /note="B1 nucleotide binding pocket [chemical binding]; other site" /db_xref="CDD:29474" misc_feature complement(order(1070614..1070616,1070845..1070847, 1071034..1071036,1071049..1071051)) /gene="rns" /locus_tag="AGROH133_05282" /note="B2 nucleotide binding pocket [chemical binding]; other site" /db_xref="CDD:29474" misc_feature complement(order(1070812..1070847,1070950..1070973)) /gene="rns" /locus_tag="AGROH133_05282" /note="CAS motifs; other site" /db_xref="CDD:29474" misc_feature complement(order(1070821..1070826,1070833..1070838, 1070947..1070949,1070953..1070955,1070962..1070964)) /gene="rns" /locus_tag="AGROH133_05282" /note="Active site [active]" /db_xref="CDD:29474" gene 1071452..1072420 /locus_tag="AGROH133_05284" /db_xref="GeneID:10266828" CDS 1071452..1072420 /locus_tag="AGROH133_05284" /note="Predicted integral membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278372.1" /db_xref="GI:325292508" /db_xref="GeneID:10266828" /translation="MKLGEIGGHDRMTLKKYIWPVIGLATIGFSAWLLYHELRGLSLD DLWESLTAIRARDWVCSGLSTLVAYAALAGYDRIALQHLGRKVNWFFITLTSFTTYAL SHNVGASVFSGAVVRYRAYTSKGLSAAEVGILVGLCSFTFIIGTIMLIGLVLVYEPDI TERFTGILPVEASTTTGVLLLAIVALYVLGSLLKLRPLKIGSFFLPYPVPKLVAQQLV IGPIELIGAAGIIYFALPEAGNPGFMVILGIFLISFSAALISHAPGGLGVLELVFVTG LPDMNPADVIAALLVFRLFYLIIPFIMALFVILFFERSQLAQARKG" misc_feature 1071482..1072414 /locus_tag="AGROH133_05284" /note="Predicted integral membrane protein [Function unknown]; Region: COG0392" /db_xref="CDD:30741" misc_feature 1071539..1072366 /locus_tag="AGROH133_05284" /note="Uncharacterised protein family (UPF0104); Region: UPF0104; cl04219" /db_xref="CDD:194802" gene complement(1072430..1073293) /locus_tag="AGROH133_05293" /db_xref="GeneID:10266829" CDS complement(1072430..1073293) /locus_tag="AGROH133_05293" /note="Protein of unknown function DUF519; Protein involved in catabolism of external DNA" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278373.1" /db_xref="GI:325292509" /db_xref="GeneID:10266829" /translation="MNYRHIYHAGNFADVLKHAVLARLVRYLQNKDKAFRVLDTHAGI GLYDLSSEEAQKTGEWQTGIGKLMDADLPAPVAELLEPYLSTVRELNPEGGMQFYPGS PKLARMLFRPQDRLSAMELHPDDARALARLFEGDYQVRVTELDGWLSLGAHLPPKEKR GLILVDPPFELENEYQRLADGLNKAYRRFSTGTYCLWYPLKKGAPIKDFHERLQSFDI PKMLCAELSVKSDRLEGLSGSGLIVVNPPYTLKDELHTLLPFLKTVMAQDRYASHRAF WLRGEEKPEED" misc_feature complement(1072451..1073293) /locus_tag="AGROH133_05293" /note="Protein of unknown function (DUF519); Region: DUF519; cl04492" /db_xref="CDD:123118" gene 1073314..1075542 /locus_tag="AGROH133_05294" /db_xref="GeneID:10266830" CDS 1073314..1075542 /locus_tag="AGROH133_05294" /note="Anaerobic dehydrogenases, typically selenocysteine-containing" /codon_start=1 /transl_table=11 /product="Molybdopterin oxidoreductase" /protein_id="YP_004278374.1" /db_xref="GI:325292510" /db_xref="GeneID:10266830" /translation="MGMMNILDGRHFGLFAASLMQYRKDMNLATPISAKNATPKAESA MRIGHTVCPHDCPSACALEVDINADGRIGRVRGANANTYTAGVICAKVARYSERIYHP GRLLTPKRRKGAKGAGDWQEISWAAALDEVADAFVKAEAKHGAEAVWPYFYAGTMGQV QRDSIERLRHAKKYSGFFGSICTNMAWTGYVMGTGALRGPDPREIGKADVVVIWGTNA VATQVNVMTHAVKARKERGAKIVVVDIYDNPTMKQADMRIVLRPGTDAALACAIMHIA FRDGYADRDYMARFADDPVGLEEHLKSKTPQWASEITGLSVEEIEDFARLVGTTKKTF FRLGYGFARQRNGAVAMHAALSIATVLGSWQYEGGGAFHNNGDIFRLNKAELMGTAYA DPNVRQLDQSQIGRVLTGDAEALRHGGPVTALLIQNTNPVNVAPEQRLVKQGFLRDDL FVAVHEQFMTETAELADIVLPATMFLEHDDIYRAGGQNHILLGPKLVEPPETVRTNLF VIEELAKRLGIDHMPGFGLSARDHVDHMLKVSGWGDFDTLAEEKWIDAQPSFEVAHYL EGFGYGDGKFRFSPEWATGPSPNKPPKNIGVMGPVAQFPKFPDQVDVIETADGEHPFR LATSPARNFLNSTFAETKTSVQKEGRPEVMICSEDATRNGIADGDIVRIGNGRGEVRL HAKIVEGARPGVLVAEGLWPNKAHLDGEGINVLTGADAVAPYGGAAFHDNKVWLHRDD EA" misc_feature 1073395..1075521 /locus_tag="AGROH133_05294" /note="Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]; Region: BisC; COG0243" /db_xref="CDD:30592" misc_feature 1073458..1075068 /locus_tag="AGROH133_05294" /note="The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These...; Region: MopB_3; cd02766" /db_xref="CDD:73330" misc_feature order(1073467..1073469,1073479..1073481,1073491..1073493, 1073578..1073580) /locus_tag="AGROH133_05294" /note="putative [4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:73330" misc_feature order(1073584..1073586,1073848..1073850,1073854..1073862, 1073953..1073958,1073962..1073964,1073971..1073976, 1074040..1074048,1074106..1074108,1074325..1074336, 1074562..1074567,1074595..1074603,1074676..1074684, 1074691..1074693,1074727..1074732,1074745..1074747) /locus_tag="AGROH133_05294" /note="putative molybdopterin cofactor binding site [chemical binding]; other site" /db_xref="CDD:73330" misc_feature 1075174..1075521 /locus_tag="AGROH133_05294" /note="The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the...; Region: MopB_CT_3; cd02786" /db_xref="CDD:30318" misc_feature order(1075192..1075206,1075210..1075221,1075408..1075410, 1075450..1075452,1075498..1075503) /locus_tag="AGROH133_05294" /note="putative molybdopterin cofactor binding site; other site" /db_xref="CDD:30318" misc_feature 1075609..1076221 /note="potential frameshift: common BLAST hit: gi|159184632|ref|NP_354155.2| MutT family NTP pyrophosphatase" gene 1075609..1075929 /locus_tag="AGROH133_05295" /db_xref="GeneID:10266831" CDS 1075609..1075929 /locus_tag="AGROH133_05295" /note="NUDIX; NTP pyrophosphohydrolases including oxidative damage repair enzymes" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278375.1" /db_xref="GI:325292511" /db_xref="GeneID:10266831" /translation="MTQTQAKNVPADTDSGRVRLVEKETVWKGFVHMQKLIFDQRMPD GKTIRIIREVHDHGSAAAILLYDAKRDSVVMVRQFRPAVFVNGDPSFMIEVPAGLLGR RHSP" misc_feature 1075660..>1075926 /locus_tag="AGROH133_05295" /note="nudix-type nucleoside diphosphatase, YffH/AdpP family; Region: TIGR00052" /db_xref="CDD:129162" misc_feature 1075777..>1075908 /locus_tag="AGROH133_05295" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or...; Region: Nudix_Hydrolase; cl00447" /db_xref="CDD:189099" gene 1075934..1076221 /locus_tag="AGROH133_05296" /db_xref="GeneID:10266832" CDS 1075934..1076221 /locus_tag="AGROH133_05296" /note="NUDIX; NTP pyrophosphohydrolases including oxidative damage repair enzymes" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278376.1" /db_xref="GI:325292512" /db_xref="GeneID:10266832" /translation="MEESGYAVEKVEYLFDMYASPGTLTEKVSLFVARIDLDVQAGSG GGLETEGEDLEVLTYGLDEAFAMIASGEITDSKTIILLQWAMLNRAALRKP" misc_feature <1075934..1076197 /locus_tag="AGROH133_05296" /note="ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as...; Region: ADPRase_NUDT5; cd03424" /db_xref="CDD:72882" misc_feature order(1075940..1075942,1076087..1076089) /locus_tag="AGROH133_05296" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:72882" misc_feature order(1075979..1075990,1075994..1075996,1076000..1076014, 1076087..1076092,1076096..1076098,1076135..1076140, 1076162..1076164,1076171..1076173,1076180..1076182, 1076192..1076197) /locus_tag="AGROH133_05296" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:72882" gene complement(1076634..1077569) /locus_tag="AGROH133_05297" /db_xref="GeneID:10266833" CDS complement(1076634..1077569) /locus_tag="AGROH133_05297" /note="Peptidase A26, omptin, Omptin family; Outer membrane protease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278377.1" /db_xref="GI:325292513" /db_xref="GeneID:10266833" /translation="MLFSRFSLPLSAVLLLGTSLPLAAEQSGITASLDAGVLNIKATE TFYNGSHKNSQLDWKTTNAMALRGSLGLELSPEWRIKTEGRIGFAGDGYMTDYDWLPP YYRDTSKTGWSDRSQHGDTRLDHYLTGSIELNRTLLEDPLQHLSAGIGFRYTDVQWSA YGGDYIYSWRGFRNNVGEFDNSEKAITYRQQIPVFYGNVTGGRKFGNWSLNAGLEGGA MIYAKATDDHWMRSIRFTDKFHVGGMFGAKAGIAYALTENASLYLDGAYEYTSFGRGD KTLTPTGGTTGLFYKDTAGGDMQSLFVGAGVKGRF" misc_feature complement(1076637..1077569) /locus_tag="AGROH133_05297" /note="Omptin family; Region: Omptin; cl01886" /db_xref="CDD:186487" gene complement(1077703..1078377) /gene="purN" /locus_tag="AGROH133_05299" /db_xref="GeneID:10266834" CDS complement(1077703..1078377) /gene="purN" /locus_tag="AGROH133_05299" /EC_number="2.1.2.2" /note="glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; Folate-dependent phosphoribosylglycinamide formyltransferase PurN" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase" /protein_id="YP_004278378.1" /db_xref="GI:325292514" /db_xref="GeneID:10266834" /translation="MMSAASRSGRARVVVFISGSGSNMVSLAKACQETDFPAEIACVI SDKASAGGLEKAQAFGIPTLVFERKTYASKAEHEGAILAALGEIAPDIICLAGYMRLI SGDFIAPYEGRIINIHPSLLPLFPGLHTHQRAIDSGMKISGCTVHFVTEGMDEGPTIA QGAVPVLSDDTAETLAARILTVEHQLYPLALKQLAEGKVRMEGGKAISSGDASKSEYP SLISVN" misc_feature complement(1077760..1078347) /gene="purN" /locus_tag="AGROH133_05299" /note="phosphoribosylglycinamide formyltransferase; Reviewed; Region: purN; PRK05647" /db_xref="CDD:180182" misc_feature complement(1077796..1078344) /gene="purN" /locus_tag="AGROH133_05299" /note="Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Region: FMT_core_GART; cd08645" /db_xref="CDD:187714" misc_feature complement(order(1077829..1077831,1077916..1077921, 1077928..1077933,1077937..1077939,1077997..1077999, 1078021..1078032,1078057..1078059,1078072..1078095, 1078306..1078314,1078327..1078329)) /gene="purN" /locus_tag="AGROH133_05299" /note="active site" /db_xref="CDD:187714" misc_feature complement(order(1077829..1077831,1078021..1078023, 1078027..1078029,1078087..1078092,1078309..1078314)) /gene="purN" /locus_tag="AGROH133_05299" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187714" misc_feature complement(order(1077916..1077921,1077928..1077933, 1078030..1078032,1078057..1078059,1078072..1078080, 1078084..1078086,1078093..1078095)) /gene="purN" /locus_tag="AGROH133_05299" /note="cosubstrate binding site; other site" /db_xref="CDD:187714" misc_feature complement(order(1077916..1077918,1078024..1078026, 1078030..1078032)) /gene="purN" /locus_tag="AGROH133_05299" /note="catalytic site [active]" /db_xref="CDD:187714" gene complement(1078374..1079447) /gene="purM" /locus_tag="AGROH133_05300" /db_xref="GeneID:10266835" CDS complement(1078374..1079447) /gene="purM" /locus_tag="AGROH133_05300" /EC_number="6.3.3.1" /note="catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; Phosphoribosylaminoimidazole (AIR) synthetase" /codon_start=1 /transl_table=11 /product="5'-phosphoribosyl-5-aminoimidazole synthetase" /protein_id="YP_004278379.1" /db_xref="GI:325292515" /db_xref="GeneID:10266835" /translation="MSQSGKNGLTYSDAGVDIDAGNLMVEKIKPAVRSTRRPGADGEI GGFGGLFDLKAAGFNDPVLVAANDGVGTKLKIAIDANFHDTVGIDLVAMCVNDLVVQG AEPLFFLDYFATGKLDPDQGAAIVSGIAAGCRESGCALIGGETAEMPGMYSDGDYDLA GFAVGAAERGQLLPAGDISEGDVILGLSSSGVHSNGFSLVRKIVSISGLDWDAPAPFA DGKKLGEALLTPTRIYVKPLLKAIRETGALKALAHITGGGFPENIPRVLPKHLAAEID LDTIQVPAVFSWLAKTGGVEAKEMLRTFNCGVGMIVVVSAENAAKVTDALTAEGETVF PLGRMVAREEGAHGTIYKGALSL" misc_feature complement(1078431..1079423) /gene="purM" /locus_tag="AGROH133_05300" /note="phosphoribosylaminoimidazole synthetase; Provisional; Region: PRK05385" /db_xref="CDD:180049" misc_feature complement(1078428..1079324) /gene="purM" /locus_tag="AGROH133_05300" /note="PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine...; Region: PurM; cd02196" /db_xref="CDD:100032" misc_feature complement(order(1078653..1078655,1078962..1078964, 1078974..1078979,1078998..1079000,1079004..1079006, 1079016..1079018,1079109..1079111,1079118..1079120, 1079127..1079129,1079145..1079147,1079157..1079159, 1079223..1079225,1079241..1079243,1079247..1079249, 1079253..1079264,1079295..1079309)) /gene="purM" /locus_tag="AGROH133_05300" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100032" misc_feature complement(order(1079016..1079024,1079157..1079159)) /gene="purM" /locus_tag="AGROH133_05300" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:100032" gene 1079744..1080883 /gene="perM" /locus_tag="AGROH133_05301" /db_xref="GeneID:10266836" CDS 1079744..1080883 /gene="perM" /locus_tag="AGROH133_05301" /note="Protein of unknown function UPF0118, Domain of unknown function DUF20; Predicted permease" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_004278380.1" /db_xref="GI:325292516" /db_xref="GeneID:10266836" /translation="MQPHVSGTSLRRQVFFWIGVLAVFIFFLMVFSSILLPFVAGMAL AYFLDPVADWLERRGLSRLMATVVILVTFVLIFALSLIIIIPLIAAQASEFITRIPQY ISSLQQLIAGADANLLPDWVSNQINAVKENFSKLLTEGAGFIGTLLTQIWNSGKSLVD VMSLLVVTPVVAFYLLLDWDRMIDKVDSWIPRDYVHTVRQIARDMDRTIAGFVRGQGS LCLILGVYYAVGLSLVGLNFGLLIGLFSGLISFIPYIGSMVGLILAVGVAIVQFWPDY IYVFLTLAVFFSGQFIEGNILQPKLVGSSVGLHPVWLMFALFAFGALFGFVGLLVAVP AAAAVGVLVRFALSRYLESDLYHGHAANLPWEEQETSSGKVDSQG" misc_feature 1079777..1080685 /gene="perM" /locus_tag="AGROH133_05301" /note="Domain of unknown function DUF20; Region: UPF0118; cl00465" /db_xref="CDD:186015" gene 1080886..1081614 /locus_tag="AGROH133_05310" /db_xref="GeneID:10266837" CDS 1080886..1081614 /locus_tag="AGROH133_05310" /note="ATPase involved in DNA replication initiation" /codon_start=1 /transl_table=11 /product="DNA replication initiation ATPase protein" /protein_id="YP_004278381.1" /db_xref="GI:325292517" /db_xref="GeneID:10266837" /translation="MTDQIKNDNARSKAEQLPLAFSHQSASGRDDLLVSDSLKAAVSL VDEWPNWPSPVVVLAGPPGSGKSHLANIWKNISSAQDIHPQAGVGAARLAETGPVLFE DADRRGFDDTELFHVINSVRQHGTTLLMTSRQWPAAWPVTLPDLRSRLKAVTVVETGE PDEGLLAQVLVKLFADRQLYMDDKLIGYIVNRMERSLDTAQTIVDRIDRLALSRGTRI TRPLAAEVLNAMGEGTRGSGLEVD" misc_feature 1080916..1081584 /locus_tag="AGROH133_05310" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 1081668..1083911 /gene="ppk" /locus_tag="AGROH133_05311" /db_xref="GeneID:10266838" CDS 1081668..1083911 /gene="ppk" /locus_tag="AGROH133_05311" /EC_number="2.7.4.1" /note="catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate" /codon_start=1 /transl_table=11 /product="Polyphosphate kinase" /protein_id="YP_004278382.1" /db_xref="GI:325292518" /db_xref="GeneID:10266838" /translation="MQQDHGTESQGMVQDMDAIVQDDFNKVQPVTEGENLWDSPARFI NREFSWLQFNRRVLEETLNTDHPLLERLRFLSISAANLDEFFMVRVAGLEGQVRQKIT VKTPDGKTPAEQLEDILKEIDNLQMEQQASLAVLQQYLAKEEIFIVRPAALSEADRTW LGTEFEERIFPVLTPLSIDPAHPFPFIPNLGFSMGLQLDSVNGREPMTALLRLPTALD RFVRLPDEKNAIRYITLEDVVGLFIHRLYPGYTVRGFGTFRIIRDSDIEVEEEAEDLV RFFESALKRRRRGSVIRIETDSEMPQSLRQFVVHELGVPDNRVAVLPGLLALNTISEI VRAPRDDLKFEPYNARFPERVREHAGDCLAAIREKDMVVHHPYESFDVVVQFLLQAAR DPEVLAIKQTLYRTSNDSPIVRALIDAAEAGKSVTALVELKARFDEEANIRWARDLER AGVQVVFGFIELKTHAKMSMVVRREDGKLRTYCHLGTGNYHPITAKIYTDLSFFTCNP KIAHDMANIFNFITGYGEPEEGMKLAISPYTLRARIVKHINEEIEHAKRGAPAAIWMK MNSLVDPEIIDTLYRASAAGVEIDLVVRGICCLRPQVAGLSDNIRVKSIVGRFLEHSR IFCFGNGFGLPSDKALVYIGSADMMPRNLDRRVETLVPLTNPTVHEQVLSQIMLGNLI DNQQSYEILADGTSRRIEVRKGEEPFNAQHYFMTNPSLSGRGEALKSSAPKLIAGLIS SRKKQAE" misc_feature 1081752..1083848 /gene="ppk" /locus_tag="AGROH133_05311" /note="polyphosphate kinase; Provisional; Region: PRK05443" /db_xref="CDD:180085" misc_feature 1082748..1083239 /gene="ppk" /locus_tag="AGROH133_05311" /note="Catalytic C-terminal domain, first repeat, of Pseudomonas aeruginosa polyphosphate kinase 1 and similar proteins; Region: PLDc_PaPPK1_C1_like; cd09165" /db_xref="CDD:197262" misc_feature order(1082748..1082750,1082757..1082762,1082778..1082789, 1082793..1082807,1082811..1082813,1082820..1082822, 1083048..1083065,1083069..1083071,1083120..1083128, 1083150..1083170,1083174..1083176,1083186..1083188, 1083192..1083197,1083204..1083209,1083213..1083218, 1083222..1083230) /gene="ppk" /locus_tag="AGROH133_05311" /note="putative domain interface [polypeptide binding]; other site" /db_xref="CDD:197262" misc_feature order(1082877..1082882,1082970..1082972,1083060..1083062, 1083066..1083068,1083126..1083128,1083132..1083134, 1083159..1083161,1083165..1083167) /gene="ppk" /locus_tag="AGROH133_05311" /note="putative active site [active]" /db_xref="CDD:197262" misc_feature 1083060..1083062 /gene="ppk" /locus_tag="AGROH133_05311" /note="catalytic site [active]" /db_xref="CDD:197262" misc_feature 1083261..1083761 /gene="ppk" /locus_tag="AGROH133_05311" /note="Catalytic C-terminal domain, second repeat, of Pseudomonas aeruginosa polyphosphate kinase 1 and similar proteins; Region: PLDc_PaPPK1_C2_like; cd09168" /db_xref="CDD:197265" misc_feature order(1083261..1083266,1083522..1083542,1083594..1083602, 1083630..1083644,1083648..1083650,1083657..1083659, 1083666..1083671,1083678..1083683,1083693..1083695) /gene="ppk" /locus_tag="AGROH133_05311" /note="putative domain interface [polypeptide binding]; other site" /db_xref="CDD:197265" misc_feature order(1083447..1083449,1083525..1083527,1083531..1083533, 1083537..1083539,1083600..1083602,1083606..1083608, 1083633..1083635,1083639..1083641) /gene="ppk" /locus_tag="AGROH133_05311" /note="putative active site [active]" /db_xref="CDD:197265" misc_feature 1083531..1083533 /gene="ppk" /locus_tag="AGROH133_05311" /note="catalytic site [active]" /db_xref="CDD:197265" gene 1083908..1085431 /gene="ppx" /locus_tag="AGROH133_05312" /db_xref="GeneID:10266839" CDS 1083908..1085431 /gene="ppx" /locus_tag="AGROH133_05312" /EC_number="3.6.1.11" /codon_start=1 /transl_table=11 /product="Exopolyphosphatase" /protein_id="YP_004278383.1" /db_xref="GI:325292519" /db_xref="GeneID:10266839" /translation="MTRSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNE KVLCGLGKGLALTGRMHEEGVSRALMALRRFHALSEQAQAQQLYVLATAAAREAENGP DFIREAEAILGCEIEVLSGEKEALYSAYGVISGFHDPDGIAGDLGGGSLELIDIKGKN CGEGITLPLGGLRLSEQSDGSLEKATTIARKHVKSFAKLLAAGEGRTFYAVGGTWRNI AKLHMEITGYPLHMMQGYELPLAEMLNFLEEVIVSRDSKDPAWQAVSKNRRSLLPFGA IAMREVLKAMKPATIAFSAQGVREGYLYSLLTEAERDTDPLLVTADELAILRARSPEH ARELADWSGRTFPVFGIEETEEESRYRQAACLLADISWRAHPDYRGLQALNIIAHSSF VAITHPGRAYIALANYYRFEGLNDNGTTQPLAAMAGDRLLELGKLLGGLLRVVYLFSA SMPGVVDHLKFRKSINPDLDLEFVVPHAYCDFAGERLDGRLQQLAKLTGKRLAFVFE" misc_feature 1083941..1085428 /gene="ppx" /locus_tag="AGROH133_05312" /note="Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]; Region: GppA; COG0248" /db_xref="CDD:30597" misc_feature 1083992..1084828 /gene="ppx" /locus_tag="AGROH133_05312" /note="Ppx/GppA phosphatase family; Region: Ppx-GppA; pfam02541" /db_xref="CDD:145597" gene complement(1085479..1086111) /locus_tag="AGROH133_05313" /db_xref="GeneID:10266840" CDS complement(1085479..1086111) /locus_tag="AGROH133_05313" /EC_number="2.3.1.-" /note="Trimeric LpxA-like; Acetyltransferase (isoleucine patch superfamily)" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004278384.1" /db_xref="GI:325292520" /db_xref="GeneID:10266840" /translation="MHSTAQLNRPKLAETVIHSTASIRDSNIGSCCEILADTSLHNVE LGNYSYLGPRCIVGDATIGKFCAIAADVRIGAPNHPMDRPSMHRFSYCPEYYATEAVR DDAFFDRRKEDRAVIGHDVWIGHGVIVLPGVKVGDGAVLAAGAVVTKDVPPYTIVGGV PAKIIRERFSQTVAGKLAKIAWWDWPFETIMARLADFQSSDIDAFCQRWS" misc_feature complement(1085485..1086072) /locus_tag="AGROH133_05313" /note="phosphonate metabolim protein, transferase hexapeptide repeat family; Region: phn_thr-fam; TIGR03308" /db_xref="CDD:132351" misc_feature complement(1085554..1085988) /locus_tag="AGROH133_05313" /note="Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and...; Region: LbH_XAT; cd03349" /db_xref="CDD:100040" misc_feature complement(order(1085608..1085610,1085632..1085634, 1085680..1085682,1085737..1085739,1085746..1085748, 1085752..1085754,1085845..1085847,1085851..1085853, 1085857..1085859,1085872..1085877,1085911..1085913, 1085962..1085964,1085968..1085970)) /locus_tag="AGROH133_05313" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100040" misc_feature complement(order(1085617..1085619,1085629..1085631, 1085635..1085640,1085644..1085646,1085668..1085670, 1085683..1085688,1085737..1085739,1085746..1085748, 1085839..1085844,1085869..1085871,1085875..1085880, 1085956..1085958,1085962..1085964)) /locus_tag="AGROH133_05313" /note="active site" /db_xref="CDD:100040" misc_feature complement(order(1085839..1085844,1085878..1085880, 1085956..1085958,1085962..1085964)) /locus_tag="AGROH133_05313" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100040" misc_feature complement(order(1085617..1085619,1085629..1085631, 1085635..1085640,1085644..1085646,1085668..1085670, 1085683..1085688,1085722..1085724,1085737..1085739, 1085746..1085748,1085776..1085778,1085869..1085871, 1085875..1085877)) /locus_tag="AGROH133_05313" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100040" gene complement(1086299..1086613) /locus_tag="AGROH133_05314" /db_xref="GeneID:10266841" CDS complement(1086299..1086613) /locus_tag="AGROH133_05314" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278385.1" /db_xref="GI:325292521" /db_xref="GeneID:10266841" /translation="MSESCPVLTPVERQVQDILQRTESAMVSTIFAALERASKQAADE LQSIGSEIQPPPHDYFAAVAHQQLFLLLCGADLETFEGGDPEVARHIIQNAQNISDHY WK" gene complement(1086790..1087137) /locus_tag="AGROH133_05315" /db_xref="GeneID:10266842" CDS complement(1086790..1087137) /locus_tag="AGROH133_05315" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278386.1" /db_xref="GI:325292522" /db_xref="GeneID:10266842" /translation="MQDNAERLYYALRKSWSLETSSLWSRENPARGQGGVTALVVQDI FGGDLAKTVVSGADHFYNIVNGTRWDFTFTQFDIPVGYEDRPATRTEAMARATPLQYA YLSACIRKALGHC" gene complement(1087297..1088652) /locus_tag="AGROH133_05316" /db_xref="GeneID:10266843" CDS complement(1087297..1088652) /locus_tag="AGROH133_05316" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278387.1" /db_xref="GI:325292523" /db_xref="GeneID:10266843" /translation="MKHILFAPFAVLALATASHAEQEFPAKLVSHAILPANTIIAAPA DAPEYLKTSAKFTTADRKRAEGLGTVAGKDGVRPTGLSMPFNGQAMQGFSGIKAMEDG SFWSLSDNGFGSKLNSSDAMLMLHHIKFDWDAGKVNALETVFLSDPDKKAPFPIVMEG STKRYLTGADFDVESIQPVADGFWVGEEFGPYILKFTRDGKLTDVIATKAGDIEVKSP DHPTLALPGNPTQKMPAFNLKRSGGYEGMALSKDGSKLYGLLEGPLYTAEGQVEMTED GSTALRIIELDTAKKEWTGRTWLYPLAQGGEAIGDFNMLDESTALVIERDNGAGTADK ACADPKKPDVNCFAVPSKVKRIYKIEFNDANAGKAARKIGYIDLLKISDPDNRKRQGG GNGFYDMPFVTIENVDRVDATHIIVGNDNNLPFSAGRALDKADDNEFVLLEVKDLLDA K" misc_feature complement(1087339..1088565) /locus_tag="AGROH133_05316" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4222" /db_xref="CDD:33947" gene complement(1088802..1089830) /gene="cya" /locus_tag="AGROH133_05318" /db_xref="GeneID:10266844" CDS complement(1088802..1089830) /gene="cya" /locus_tag="AGROH133_05318" /EC_number="4.6.1.1" /note="Adenylyl cyclase class-3/4/guanylyl cyclase; Adenylate cyclase, family 3 (some proteins contain HAMP domain)" /codon_start=1 /transl_table=11 /product="adenylate cyclase" /protein_id="YP_004278388.1" /db_xref="GI:325292524" /db_xref="GeneID:10266844" /translation="MRKLLPILDYVVLFVAVAGSGVAYAFLEYGGGALIGATYALFAC APILAFERGYVLPGLSRQVSALPTPAYIAVGLIIYAVLVFCGFGLGGTILWVSGIFPG TWKRAVHAEVQTLIFTLIVCGIIVFIMRVRELLGRDIFIDLILGRYRRPVSEDRVFIF IDLVGSTSFAETHGDLKAQEFLGEIFASYAAPVRRHGGVIDDYIGDAAIITWPYHMAI RRAACVRCVFDIQATIEDKRDMWLARFGEVPRLRFAIHGGPVITAEIGVDHHKITYFG DTVNTTSRLESLSKMLGHPVLISADLAHQLVLPKGVRSEYLGEHAVKGRGQTLGVCTL SQYQAPAA" misc_feature complement(<1089339..>1089578) /gene="cya" /locus_tag="AGROH133_05318" /note="variant surface antigen, rifin family; Region: RIFIN; TIGR01477" /db_xref="CDD:162381" misc_feature complement(1088838..1089368) /gene="cya" /locus_tag="AGROH133_05318" /note="cyclase homology domain; Region: CHD; cd07302" /db_xref="CDD:143636" misc_feature complement(order(1088862..1088864,1088979..1088984, 1088991..1088996,1089006..1089014,1089204..1089206, 1089213..1089221,1089225..1089227,1089330..1089347, 1089351..1089353)) /gene="cya" /locus_tag="AGROH133_05318" /note="nucleotidyl binding site; other site" /db_xref="CDD:143636" misc_feature complement(order(1089213..1089215,1089345..1089347)) /gene="cya" /locus_tag="AGROH133_05318" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143636" misc_feature complement(order(1088862..1088864,1088991..1088993, 1089000..1089011,1089039..1089041,1089048..1089050, 1089222..1089227,1089261..1089263,1089273..1089275, 1089282..1089287,1089294..1089296,1089330..1089332)) /gene="cya" /locus_tag="AGROH133_05318" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143636" gene complement(1090016..1090630) /locus_tag="AGROH133_05323" /db_xref="GeneID:10266845" CDS complement(1090016..1090630) /locus_tag="AGROH133_05323" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278389.1" /db_xref="GI:325292525" /db_xref="GeneID:10266845" /translation="MKPARALLLAASIAAAGILPTLSSTSARADDGKVDLQGEWTTDC LEIGKNDRHGIVTRITIRGGRMHAVSQIYARSSCQQPTVQVRYEGTLDGGLKDNDSML FAHTVISIAMTPNDPAVVEHYNGDPKGTGCGLTGWKENIPFDVDGRTCAAITFASKGE TLFDRAWIDGNRLRFAAFPVTWSNRSPDDRPQSPLETAYYRTSY" gene complement(1090768..1091928) /gene="rnd" /locus_tag="AGROH133_05325" /db_xref="GeneID:10266846" CDS complement(1090768..1091928) /gene="rnd" /locus_tag="AGROH133_05325" /EC_number="3.1.26.3" /codon_start=1 /transl_table=11 /product="Ribonuclease D" /protein_id="YP_004278390.1" /db_xref="GI:325292526" /db_xref="GeneID:10266846" /translation="MIETTAALAEACTELAKSEFITIDTEFLRETTFWPELCLVQMAS PTLEVLVDPLAKGLDLTPLFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQV AAMVCGFGDSISYDQLVQRIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVY LALKAQLEREGRSLWLTEEMDILESRETYDMHPDDAWLRLKSRLRKPTELAILKFVAA WREREARSRNVPRSRVLKDDAIFEIAQQQPKDTEALSRLRTIPKGWERSSSGTAIIET VNAALALPKEEMPKAPRHSHAPEGSGAAVELLKVLLKLTADKHGVAAKVIANSEDLDK IASEGEAATVAALTGWRRELFGDVALKLINGEVALRFAGKKVEAVDVAVSEA" misc_feature complement(1090831..1091880) /gene="rnd" /locus_tag="AGROH133_05325" /note="ribonuclease D; Region: rnd; TIGR01388" /db_xref="CDD:130455" misc_feature complement(1091380..1091880) /gene="rnd" /locus_tag="AGROH133_05325" /note="DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins; Region: RNaseD_exo; cd06142" /db_xref="CDD:176654" misc_feature complement(order(1091473..1091475,1091485..1091487, 1091584..1091589,1091683..1091691,1091695..1091700, 1091848..1091859)) /gene="rnd" /locus_tag="AGROH133_05325" /note="putative active site [active]" /db_xref="CDD:176654" misc_feature complement(order(1091473..1091475,1091485..1091487, 1091683..1091685,1091851..1091853,1091857..1091859)) /gene="rnd" /locus_tag="AGROH133_05325" /note="catalytic site [active]" /db_xref="CDD:176654" misc_feature complement(order(1091473..1091475,1091485..1091487, 1091584..1091589,1091686..1091691,1091695..1091700, 1091848..1091856)) /gene="rnd" /locus_tag="AGROH133_05325" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:176654" misc_feature complement(1091098..1091304) /gene="rnd" /locus_tag="AGROH133_05325" /note="HRDC domain; Region: HRDC; cl02578" /db_xref="CDD:154997" gene complement(1092011..1093282) /locus_tag="AGROH133_05326" /db_xref="GeneID:10266847" CDS complement(1092011..1093282) /locus_tag="AGROH133_05326" /note="Arabinose efflux permease" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004278391.1" /db_xref="GI:325292527" /db_xref="GeneID:10266847" /translation="MSQIRPLIPLLVTAGILIGGNGLQGTYIALRGLSEGFSASTIGL ISAAYSIGFALGCISVTRLLRKIGHIRTFATMAAVASAASIAMPLVLHPLFWMLMRFV IGIAVACLFAAIESWINAQVTNSNRARTLSIYRFVDLGSVTLAQYIIPVAGIDGPVVF SLIAMALTLSLVPISIADKSNPAPPKQIPFNLFAVWRISPLAVVGCVAVGLSMAAFRN IGPIYAEQIGLSVTAIATFMSAGIIGGVVLQYPLGVYSDRYDRRIIILATTACSVIVG LFLALFAGSDEWSNIIGVFVFGAFALPLYSLSSAHGNDHAKEGEHAMVSAGLLFFWSV GATVGPLLASVLIDQFGPKALFSYTAAIQIVFIAYTIYRLRVREGVPVEERNWRFRPL LRTSAYFQKLAAPSPPKNDGPTPKPPEKNDP" misc_feature complement(1092167..1093264) /locus_tag="AGROH133_05326" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(1092263..1093255) /locus_tag="AGROH133_05326" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature complement(order(1092275..1092277,1092284..1092289, 1092296..1092301,1092308..1092313,1092344..1092346, 1092353..1092358,1092368..1092370,1092377..1092382, 1092389..1092391,1092536..1092538,1092548..1092550, 1092557..1092559,1092569..1092571,1092581..1092583, 1092623..1092625,1092632..1092637,1092644..1092649, 1092656..1092658,1092857..1092859,1092875..1092880, 1092887..1092892,1092926..1092928,1092935..1092940, 1092947..1092952,1092959..1092964,1093100..1093105, 1093109..1093114,1093124..1093126,1093133..1093138, 1093145..1093147,1093196..1093201,1093205..1093213, 1093220..1093222)) /locus_tag="AGROH133_05326" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 1093367..1095250 /gene="aspS" /locus_tag="AGROH133_05327" /db_xref="GeneID:10266848" CDS 1093367..1095250 /gene="aspS" /locus_tag="AGROH133_05327" /EC_number="6.1.1.12" /note="catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes" /codon_start=1 /transl_table=11 /product="Aspartyl-tRNA synthetase" /protein_id="YP_004278392.1" /db_xref="GI:325292528" /db_xref="GeneID:10266848" /translation="MLCLDKSGWSCAFPANFDSAAHLAHDTLQDIKMHRYRSHTCAAL RKSDVGETVRLSGWVHRVRDHGGVLFIDLRDHYGITQVVADPDSPAFKVAETVRGEWV IRIDGLVKARSEDTINKGMATGEIELYAQEIEVLGVAKELPLPVFGEPEYPEDVRLKY RFLDLRRETLHKNIVKRTQIISSMRKGMGDLGFAEYTTPILTASSPEGARDFLVPSRI HEGQFFALPQAPQQYKQLLMVAGFDRYFQIAPCFRDEDPRADRLPGEFYQLDVEMSFV TQEDVWTTMEPMMTAVFEQFAEGKPVTKEWPRIPYDESIRKYGSDKPDLRNPIVMEAV TEHFDGSGFKVFANMIASNPKVQVWAIPAKTGGSRAFCDRMNAWAQSQGQPGLGYIFW KEEEGKVAGSGPLAKNIGEERTEALRQQLGLEAGDACFFVAGDPAKFYKFAGEARTRA ADELNLIDRDRFEMCWIVDFPFFEYNDEEKKIDFAHNPFSMPQGGMEALEGQDPLSIK AFQYDAVCNGFEIASGSIRNQSPELMVKAFEKVGLSQSDVEERFGGLYRAFQYGAPPH GGCAFGIDRVVMLLVGAKNLREITLFPMNQQAQDLLMNAPSPATPTQLRELALRVVPS KKD" misc_feature 1093466..1095241 /gene="aspS" /locus_tag="AGROH133_05327" /note="aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476" /db_xref="CDD:179042" misc_feature 1093475..1093876 /gene="aspS" /locus_tag="AGROH133_05327" /note="EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317" /db_xref="CDD:58587" misc_feature order(1093475..1093477,1093484..1093486,1093538..1093540, 1093592..1093594,1093775..1093777,1093781..1093786) /gene="aspS" /locus_tag="AGROH133_05327" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58587" misc_feature order(1093547..1093549,1093553..1093561,1093574..1093576, 1093607..1093609,1093658..1093660,1093700..1093702, 1093718..1093720,1093745..1093747,1093793..1093795) /gene="aspS" /locus_tag="AGROH133_05327" /note="anticodon binding site; other site" /db_xref="CDD:58587" misc_feature 1093886..>1094323 /gene="aspS" /locus_tag="AGROH133_05327" /note="Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the...; Region: AspRS_core; cd00777" /db_xref="CDD:73228" misc_feature order(1093895..1093903,1093910..1093912,1093919..1093924, 1093931..1093933,1093940..1093951,1093955..1093975, 1093994..1093996,1094003..1094017,1094027..1094038, 1094081..1094086,1094093..1094098,1094114..1094116, 1094126..1094128,1094159..1094161,1094189..1094191, 1094204..1094206) /gene="aspS" /locus_tag="AGROH133_05327" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:73228" misc_feature 1093961..1093975 /gene="aspS" /locus_tag="AGROH133_05327" /note="motif 1; other site" /db_xref="CDD:73228" misc_feature order(1093985..1093993,1094051..1094053,1094057..1094059, 1094066..1094068,1094123..1094125,1094129..1094131, 1094144..1094152,1094162..1094164,1094168..1094170) /gene="aspS" /locus_tag="AGROH133_05327" /note="active site" /db_xref="CDD:73228" misc_feature 1094120..1094131 /gene="aspS" /locus_tag="AGROH133_05327" /note="motif 2; other site" /db_xref="CDD:73228" misc_feature 1094402..1094689 /gene="aspS" /locus_tag="AGROH133_05327" /note="GAD domain; Region: GAD; pfam02938" /db_xref="CDD:145868" misc_feature <1094735..1095157 /gene="aspS" /locus_tag="AGROH133_05327" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:193739" misc_feature order(1094924..1094929,1094939..1094941,1095068..1095073, 1095077..1095082,1095089..1095091) /gene="aspS" /locus_tag="AGROH133_05327" /note="active site" /db_xref="CDD:29813" misc_feature order(1095080..1095082,1095089..1095091) /gene="aspS" /locus_tag="AGROH133_05327" /note="motif 3; other site" /db_xref="CDD:29813" gene 1095507..1096961 /gene="creD" /locus_tag="AGROH133_05328" /db_xref="GeneID:10266849" CDS 1095507..1096961 /gene="creD" /locus_tag="AGROH133_05328" /note="Inner membrane protein CreD; Inner membrane protein involved in colicin E2 resistance" /codon_start=1 /transl_table=11 /product="tolerance to colicin E2" /protein_id="YP_004278393.1" /db_xref="GI:325292529" /db_xref="GeneID:10266849" /translation="MAHESEKDLAPAGGQMPPAPPRNGFAVSLRSPGAKFLMIGFISM VLLVPLLLVWALTEERASRAEDVSGRIASGWGGDQVVNGPYLAVPFDVERRREVNGQS IVDRTTEWALVMPETLDVTADLKTEEKRLSIYSLPVYNGDLVLKGRFGAGILQDLARF SATPRLDSAILVLSIQDMTGIRSSAGVRIDGGSVLPFDPGMRDISVIAPRTGAQDMSI RSDAGVHRSIERGLVEKGFDFDIAFSLNGSGSFAVAPAGQTTSLAAKANWPHPGFEGL FLPEEKTVTASDFTANWTIPYLARGIDRVVESSRLPLTDSLMRINLVEPVKFYQIIAR TLKYSIGFISLVFLAVFIVELRGGSSVHWIQYVLTGLALIVFYVLLLALAEHTGFTIA YAAASLLTALLISSYLGSATDSRQNGIALFTVLAVAYGVMYLVLNEDEYALLAGALIS FIAIAATMFATRRVDWSGTGPTQHNTNIGRSEAS" misc_feature 1095666..1096925 /gene="creD" /locus_tag="AGROH133_05328" /note="Inner membrane protein CreD; Region: CreD; cl01844" /db_xref="CDD:194200" gene 1097060..1098649 /locus_tag="AGROH133_05335" /db_xref="GeneID:10266850" CDS 1097060..1098649 /locus_tag="AGROH133_05335" /note="Sulfate transporter family; Sulfate permease and related transporters (MFS superfamily)" /codon_start=1 /transl_table=11 /product="sulfate permease" /protein_id="YP_004278394.1" /db_xref="GI:325292530" /db_xref="GeneID:10266850" /translation="MALLAADPPDNAKHRHSFSIYRTRFRPVRHTLRKNQMNRFQTYR REWFSNIRGDVLSGIVVALALIPEAIGFSVIAGVDPKVGLFASFAIACVCAFTGGRPG MISAATAATAVLMVTLVKEHGLQYLFAATILMGVLQIAAGFARLGRVMGFVSRSVMTG FVNALAILIFMAQLPELIGVPIATYVMIAAGLAIIYLFPLVTKIIPSPLVAIVVLTCV AVFFGMDIRTVGNLGELPSTLPVFALPQVPLTFETLQIIFPYSAALAAVGLLESLLTA QIVDDMTDTGSNKSRECIGQGTGNIASALIGGMGGCAMIGQSVINVRSGGRGRLSTFV AGAFLLFLILVLDDLVRIIPMAALVAVMIMVSIGTFSWRSILDLSRNPPSSSIVMLVT VGTVLATHDLAKGVLAGVLLSGVFFAGKVSKLFHVRPELVADGRHRIYRVDGQIFFAS TESFIAAFDFAEDVETITIDVTQAHLWDISAVGALDKVVLKFRKTGKTVEVIGVNEAS AHMIDRFALHDKQDGATASIH" misc_feature 1097153..1098631 /locus_tag="AGROH133_05335" /note="Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659" /db_xref="CDD:31004" misc_feature 1097480..1098223 /locus_tag="AGROH133_05335" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" misc_feature 1098341..1098619 /locus_tag="AGROH133_05335" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042" /db_xref="CDD:132913" gene complement(1098693..1099883) /locus_tag="AGROH133_05347" /db_xref="GeneID:10266851" CDS complement(1098693..1099883) /locus_tag="AGROH133_05347" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278395.1" /db_xref="GI:325292531" /db_xref="GeneID:10266851" /translation="MRLKSTRQILFASAALLALSAPAFALDGNDVLKKINAAYAAQGG EIAAGSVAVNGDTVTLNGVTFNAAADPAKKIPVGNVTLEGVEENNGGYKIKNARFDNV DYKQENVEIKANDIYMSGLTIPADATTGTIDALMFYDEAHSGPISVSIDGKQAFSLEE SSATMSVSDDKASIGFDLDASGFKADLSEVNDPATKDAIEKLNLQALSGNMTMSGSWE VASGTVDVEEYAIDLDKVGRLNMSFGFSGYTLAFIKSMQETVKAQAANPNKEQAEQAA GLAMLGLMQQLSFVNAEISFEDASITKRAIDYAASQQGMTSDQLSQTIKGMAPIMMAS LNVPELQNMVSAAINAYIDNPKSFSISAEPEKPVPFPMIMGAAMGAPNTLPTMLGVTV TANE" gene 1100114..1102366 /gene="parC" /locus_tag="AGROH133_05350" /db_xref="GeneID:10266852" CDS 1100114..1102366 /gene="parC" /locus_tag="AGROH133_05350" /EC_number="5.99.1.-" /note="decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV subunit A" /protein_id="YP_004278396.1" /db_xref="GI:325292532" /db_xref="GeneID:10266852" /translation="MGKNLVPPSGGDDNIHPVDLKAALEERYLAYALSTIMHRALPDV RDGLKPVHRRIIHAMSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQD FSQRYPIVDGQGNFGNIDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEED EEPVVLPGAFPNLLANGASGIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEF IPGPDLPTGGVIIESRENILEAYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQ KSRLIEKIAELLLARKLPLLEDVRDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLE SRLPLNMNVLSLGRVPKVMALNEVLSEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLL VAYLNLDEVIRIIREEDEPKQVMMAKWSLTDNQAEAILNMRLRNLRKLEEFEIRKEFD ELSSEKAEIEGLLASDEKQWQTVAWEIGEVKKKYAKATEIGRRRTQFADAPDADIEAI QQAMIEKEPVTIVISQKGWIRALKGHMSDTSALTFKEGDGPKLAFPAQTTDKLLLLTT GGKAYTLGADKLPGGRGHGEPIRIMVDMENDQDILTAFVHDPSRKLLLVSTGGNGFIV AESEMVANTRKGKQIMNVAMPDEAKLAVPVTGDHVAVVGENRKLLAFPLSQVPEMSRG KGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRLFTKVGEELREWLADRATVGRTVPK GFPRSGKFGG" misc_feature 1100132..1102357 /gene="parC" /locus_tag="AGROH133_05350" /note="DNA topoisomerase IV subunit A; Validated; Region: PRK05561" /db_xref="CDD:180129" misc_feature 1100228..1101553 /gene="parC" /locus_tag="AGROH133_05350" /note="DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in...; Region: TOP4c; cd00187" /db_xref="CDD:29149" misc_feature order(1100228..1100305,1100318..1100467,1100471..1100527, 1100531..1100602,1100609..1100611) /gene="parC" /locus_tag="AGROH133_05350" /note="CAP-like domain; other site" /db_xref="CDD:29149" misc_feature 1100498..1100500 /gene="parC" /locus_tag="AGROH133_05350" /note="Active site [active]" /db_xref="CDD:29149" misc_feature order(1101299..1101307,1101314..1101325,1101347..1101352, 1101392..1101442) /gene="parC" /locus_tag="AGROH133_05350" /note="primary dimer interface [polypeptide binding]; other site" /db_xref="CDD:29149" gene complement(1102420..1102665) /locus_tag="AGROH133_05351" /db_xref="GeneID:10266853" CDS complement(1102420..1102665) /locus_tag="AGROH133_05351" /note="SpoVT/AbrB-like, transcription regulator" /codon_start=1 /transl_table=11 /product="SpoVT/AbrB family transcriptional regulatory protein" /protein_id="YP_004278397.1" /db_xref="GI:325292533" /db_xref="GeneID:10266853" /translation="MKATICEIGEAAGIVIPKDMLERLGWKTGDVLDLSVYGNMLELR AAGGLDEELTDDFNRQLEHARIAMRKYHVALRTLAKS" misc_feature complement(1102426..1102659) /locus_tag="AGROH133_05351" /note="SpoVT / AbrB like domain; Region: SpoVT_AbrB; cl00877" /db_xref="CDD:186236" gene complement(1102723..1103562) /locus_tag="AGROH133_05352" /db_xref="GeneID:10266854" CDS complement(1102723..1103562) /locus_tag="AGROH133_05352" /EC_number="2.3.2.8" /note="Arginine-tRNA-protein transferase, C terminus; Putative arginyl-tRNA:protein arginylyltransferase" /codon_start=1 /transl_table=11 /product="arginyl-tRNA-protein transferase" /protein_id="YP_004278398.1" /db_xref="GI:325292534" /db_xref="GeneID:10266854" /translation="MSLEASPHPVKSRRAFTTDAGGDHGSMNTQATPSPQFYLTAPAT CPYLPNQMERKVFTHLVGPRASEMNDLLTQGGFRRSQNIAYRPACETCRACVSVRILA EQFQPTKSMRRVLSINKDVVATVHAAEPSTEQFSLFRRYLDHRHQSGGMSDMSALDYA IMIEDTHVNTRIIEYRVREPGSGIDSSKRGELLAVALSDVMSDGLSMVYSFFNPDLEK RSLGTFMIMDHITRTRALGLPHVYLGYWVDGSEKMGYKTRYHPQEHLTPRGWEVYKPT VEE" misc_feature complement(1102738..1103484) /locus_tag="AGROH133_05352" /note="arginyl-tRNA-protein transferase; Provisional; Region: PRK01305" /db_xref="CDD:179277" misc_feature complement(1103200..1103457) /locus_tag="AGROH133_05352" /note="Arginine-tRNA-protein transferase, N terminus; Region: ATE_N; pfam04376" /db_xref="CDD:190958" misc_feature complement(1102753..1103166) /locus_tag="AGROH133_05352" /note="Arginine-tRNA-protein transferase, C terminus; Region: ATE_C; pfam04377" /db_xref="CDD:190959" gene complement(1103661..1104119) /locus_tag="AGROH133_05353" /db_xref="GeneID:10266855" CDS complement(1103661..1104119) /locus_tag="AGROH133_05353" /note="RDD; Predicted membrane protein/domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278399.1" /db_xref="GI:325292535" /db_xref="GeneID:10266855" /translation="MNLDQNPTYVAPDDWRAYSGVLSRRIFAFLIDYAIVLLLCIPAA VIVFFLGVITLGLGFFLYPALFVIVAVLYFGVTLSGPSQASPGMRAMGIAMARMDGRR IDFLLATVHIALFWIINSVLTPLILLAGLFTERSRLVHDFLLGTVMVRTY" misc_feature complement(1103667..1104113) /locus_tag="AGROH133_05353" /note="RDD family; Region: RDD; cl00746" /db_xref="CDD:193923" gene complement(1104235..1105248) /gene="hemB" /locus_tag="AGROH133_05357" /db_xref="GeneID:10266856" CDS complement(1104235..1105248) /gene="hemB" /locus_tag="AGROH133_05357" /EC_number="4.2.1.24" /note="catalyzes the formation of porphobilinogen from 5-aminolevulinate" /codon_start=1 /transl_table=11 /product="Delta-aminolevulinic acid dehydratase" /protein_id="YP_004278400.1" /db_xref="GI:325292536" /db_xref="GeneID:10266856" /translation="MQDKTHLVDAITGHRRMRRNRKADWTRRLVQESRLTVDDLIWPV FIVPGSNILDPIPAMPGVNRMSVDKLVEAAKEAADLGIPAIATFPNIEMDLRDETGSN ALEANNLINQATIAVKKAVPNIGMITDVALDPFTSHGHDGILRGDEIVNDETVDQVVR AAILQADAGSDIISPSEMMDGRIGAIRRGLDAAGHQNVGIMAYATKFSSGYYGPYREA ISTAGLLKGDKNSYYISPANGMEAIRDAALDVEEGADMLMVKPGLPYLDICWRLKENF GLPTFAYQVSGEYTQIKAAAMHGWIDGERVMMETLLCFKRAGCDGILSYFAVEAARKL AKG" misc_feature complement(1104244..1105206) /gene="hemB" /locus_tag="AGROH133_05357" /note="Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS_aspartate_rich; cd04823" /db_xref="CDD:88599" misc_feature complement(order(1104301..1104303,1104310..1104312, 1104322..1104324,1104331..1104333,1104376..1104378, 1104448..1104462,1104514..1104519,1104526..1104528, 1104535..1104546,1104553..1104558,1104616..1104624, 1104709..1104714,1104793..1104798,1105069..1105071, 1105078..1105080,1105150..1105158,1105183..1105188, 1105195..1105203)) /gene="hemB" /locus_tag="AGROH133_05357" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88599" misc_feature complement(order(1104502..1104504,1104514..1104516, 1104709..1104711,1105201..1105203)) /gene="hemB" /locus_tag="AGROH133_05357" /note="allosteric magnesium binding site [ion binding]; other site" /db_xref="CDD:88599" misc_feature complement(order(1104274..1104276,1104391..1104393, 1104400..1104402,1104469..1104471,1104550..1104552, 1104562..1104564,1104586..1104588,1104601..1104606, 1104613..1104615,1104631..1104633,1104721..1104723, 1104826..1104828,1104850..1104852,1104856..1104858, 1104862..1104864)) /gene="hemB" /locus_tag="AGROH133_05357" /note="active site" /db_xref="CDD:88599" misc_feature complement(order(1104718..1104720,1104826..1104828, 1104850..1104852)) /gene="hemB" /locus_tag="AGROH133_05357" /note="aspartate-rich active site metal binding site; other site" /db_xref="CDD:88599" misc_feature complement(order(1104469..1104471,1104631..1104633)) /gene="hemB" /locus_tag="AGROH133_05357" /note="Schiff base residues; other site" /db_xref="CDD:88599" gene 1105316..1105867 /locus_tag="AGROH133_05358" /db_xref="GeneID:10266857" CDS 1105316..1105867 /locus_tag="AGROH133_05358" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278401.1" /db_xref="GI:325292537" /db_xref="GeneID:10266857" /translation="MRQCFPLDFPGGRGCFDKASRRIQYGLVARPSKPYLPAMEPDSQ PLPKRPLTEILFLVFMRLVAVSCFWFGLQYWAMLTGYSLGGHGRFDMLNLPWRVAGSA LAVIFPVAALGLWLGASWGAVMWVLGAGTQIAMYKVWPYIFGANTLVPVMHGLVATIY ILFLVAFWLDQRQNEERARIDLP" gene 1106099..1106611 /gene="mucS" /locus_tag="AGROH133_05363" /db_xref="GeneID:10266858" CDS 1106099..1106611 /gene="mucS" /locus_tag="AGROH133_05363" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="exopolysaccharide II synthesis transcriptional activator ExpG" /protein_id="YP_004278402.1" /db_xref="GI:325292538" /db_xref="GeneID:10266858" /translation="MINSKAKPQAVVADAHEDTIRSLYMESLHLVERLHRRLLDVIKD EFDRQGRDDVNAVQALLLFNIGNSELTAGELRSRGYYLGSNVSYNVKKLVDLGLINHQ RSRVDRRSVRISLTEKGQEIAETVAHLYERHVGSIEKVGGIGTGEFSEMNKLLQRLDR FWNDSIAYRL" misc_feature 1106246..1106497 /gene="mucS" /locus_tag="AGROH133_05363" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 1106987..1108318 /locus_tag="AGROH133_05364" /db_xref="GeneID:10266859" CDS 1106987..1108318 /locus_tag="AGROH133_05364" /note="Peptidoglycan binding-like; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278403.1" /db_xref="GI:325292539" /db_xref="GeneID:10266859" /translation="MTKKTVSESVSRRALLRSAVSVGVAALAAPALAQNALNDLMGSS RRGNWDDQFDANSSRSAVGVVSNNPVLGREAPVYMQQAIMQYQQIVQNGGWPDVPVTQ QRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPADGVS GEYTTKALNVSAQIRLAQLQTNLVRIQSMSGDLGQRHLMVNIPAAAIEAVENERVVLR NTAVVGRASRPTHVINSKIYEVILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLI DGKGQEVSPTAVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLF NKLMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIATRVNTPIKLAQEVPVYF VYITAWSAKDGVVQFRDDIYEKDGNAELALNTTTGIEQPAGPVDDDLLPRN" misc_feature <1107098..1108285 /locus_tag="AGROH133_05364" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2989" /db_xref="CDD:32808" misc_feature 1107314..1107490 /locus_tag="AGROH133_05364" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene 1108529..1109818 /gene="glyA" /locus_tag="AGROH133_05366" /db_xref="GeneID:10266860" CDS 1108529..1109818 /gene="glyA" /locus_tag="AGROH133_05366" /EC_number="2.1.2.1" /note="catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; glycine/serine hydroxymethyltransferase" /codon_start=1 /transl_table=11 /product="serine hydroxymethyltransferase" /protein_id="YP_004278404.1" /db_xref="GI:325292540" /db_xref="GeneID:10266860" /translation="MSNTDAFFSRPLAEVDPDIFGAIEKELGRQRHEIELIASENIVS RAVLEAQGSIMTNKYAEGYPGKRYYGGCQFVDIAEEIAIERAKKLFGVNFANVQPNSG SQMNQAVFLALLQPGDTFMGLDLNSGGHLTHGSPVNMSGKWFNVVSYGVREGDNLLDM DEVERKAKETRPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQH PSPFPHCHVATTTTHKSLRGPRGGMILTNDEDLAKKFNSAVFPGLQGGPLMHVIAAKA VAFGEALQPEFKDYAAQVVKNAKALAETLIEGGLDVVSGGTDNHLMLVDLRKKNATGK RAEAALGRAYVTCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFKEAEFREIGKLIVEV LDGLKVANSDEGNAAVEAAVREKVVGLTDRFPMYPYM" misc_feature 1108565..1109707 /gene="glyA" /locus_tag="AGROH133_05366" /note="Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of...; Region: SHMT; cd00378" /db_xref="CDD:99733" misc_feature order(1108574..1108576,1108580..1108582,1108601..1108606, 1108631..1108633,1108646..1108648,1108700..1108702, 1108754..1108759,1108781..1108783,1108826..1108828, 1108847..1108849,1108952..1108957,1109330..1109332, 1109384..1109386) /gene="glyA" /locus_tag="AGROH133_05366" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99733" misc_feature order(1108643..1108645,1108703..1108705,1108733..1108735, 1108832..1108837,1108916..1108918,1109066..1109068, 1109141..1109143,1109150..1109152,1109225..1109230, 1109246..1109248,1109624..1109626) /gene="glyA" /locus_tag="AGROH133_05366" /note="glycine-pyridoxal phosphate binding site [chemical binding]; other site" /db_xref="CDD:99733" misc_feature order(1108643..1108645,1108916..1108918,1109228..1109230, 1109624..1109626) /gene="glyA" /locus_tag="AGROH133_05366" /note="active site" /db_xref="CDD:99733" misc_feature order(1108709..1108711,1108730..1108732,1108901..1108903, 1108913..1108915,1108919..1108921,1109306..1109308, 1109576..1109578) /gene="glyA" /locus_tag="AGROH133_05366" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:99733" gene 1109831..1110310 /locus_tag="AGROH133_05367" /db_xref="GeneID:10266861" CDS 1109831..1110310 /locus_tag="AGROH133_05367" /EC_number="2.5.1.-" /note="Ribonucleotide reductase regulator NrdR-like; Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains" /codon_start=1 /transl_table=11 /product="ATP-cone domain protein" /protein_id="YP_004278405.1" /db_xref="GI:325292541" /db_xref="GeneID:10266861" /translation="MRCPFCGSEDTQVKDSRPAEDNTSIRRRRICPDCGGRFTTYERV QLRELMVIKKSGRKLPFDREKLVRSFEIALRKRPVDRDRIERAVSGIARRLESSGETE IPSEEIGLQVLEALKSLDDVAFVRYASVYRDFSHAEDFENVIAEINAKIARDTDAGA" misc_feature 1109831..1110292 /locus_tag="AGROH133_05367" /note="transcriptional regulator NrdR; Validated; Region: nrdR; PRK00464" /db_xref="CDD:179038" misc_feature 1109975..1110232 /locus_tag="AGROH133_05367" /note="ATP cone domain; Region: ATP-cone; pfam03477" /db_xref="CDD:190653" gene 1110313..1111554 /gene="ribD" /locus_tag="AGROH133_05368" /db_xref="GeneID:10266862" CDS 1110313..1111554 /gene="ribD" /locus_tag="AGROH133_05368" /EC_number="1.1.1.193" /EC_number="3.5.4.26" /note="Riboflavin biosynthesis protein RibD, Cytidine and deoxycytidylate deaminase zinc-binding region; Pyrimidine reductase, riboflavin biosynthesis" /codon_start=1 /transl_table=11 /product="diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-5-phosphoribosylamino uracil reductase" /protein_id="YP_004278406.1" /db_xref="GI:325292542" /db_xref="GeneID:10266862" /translation="MTSRADDEKFMARAIEVSLRHQGQTETNPSVGCVLVKDRKIIAE AVTAIGGRPHAERQALEIAGEAARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVV AVDDPDERVSGRGYSILREAGIVVETGLLREQGKRALAGYLTRQVKKRPHVILKLAIS SDGMIGRQGEGQVAITGPQARHAVHELRARCDCILVGIRTAIADDPELTVRIAGLEDR SPVRIVLDRKFELPLTSKLVKTARDLPVVVAALPPSALPGISPSRGEIDSPRPTRSDL VSVTHSPTFGVGKNAALSISPREGEVPGRAEGGSHDRRQPLIDAGVEILEAPTLENLL HILAERGMSELLVEGGAFAAKSFLEADLVDRIMLFESPVVVGEGGIETPLSRADIPGD YVLVSETAYGPDRCFDYERPL" misc_feature 1110343..1110681 /gene="ribD" /locus_tag="AGROH133_05368" /note="Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284" /db_xref="CDD:29827" misc_feature order(1110472..1110480,1110544..1110549,1110574..1110576) /gene="ribD" /locus_tag="AGROH133_05368" /note="catalytic motif [active]" /db_xref="CDD:29827" misc_feature order(1110472..1110474,1110478..1110480,1110547..1110549, 1110574..1110576) /gene="ribD" /locus_tag="AGROH133_05368" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:29827" misc_feature 1110754..1111548 /gene="ribD" /locus_tag="AGROH133_05368" /note="Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-...; Region: DHFR; cl00161" /db_xref="CDD:193688" gene 1111554..1112165 /gene="ribC" /locus_tag="AGROH133_05369" /db_xref="GeneID:10266863" CDS 1111554..1112165 /gene="ribC" /locus_tag="AGROH133_05369" /EC_number="2.5.1.9" /note="catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine" /codon_start=1 /transl_table=11 /product="Riboflavin synthase alpha chain" /protein_id="YP_004278407.1" /db_xref="GI:325292543" /db_xref="GeneID:10266863" /translation="MFTGIVTDVGTVSELEALAEGIRLRVATNYDPKTIDMGASISHG GVCLTVTKLPEDGSNERWYEVEAWEEALRLTTIAGWQKGTHVNLERALKIGDELGGHI VSGHVDGKAEILSVEPEGEAVRIRLRAPDHLAKFVAPKGSIALDGTSLTVNAVDGTDF DVLLIRHTLTVTTWGERQPGDFVNFEVDTMARYAARLAEFPSA" misc_feature 1111554..1112150 /gene="ribC" /locus_tag="AGROH133_05369" /note="riboflavin synthase subunit alpha; Provisional; Region: PRK09289" /db_xref="CDD:181760" misc_feature 1111560..1111826 /gene="ribC" /locus_tag="AGROH133_05369" /note="Lumazine binding domain; Region: Lum_binding; pfam00677" /db_xref="CDD:144321" misc_feature 1111863..1112117 /gene="ribC" /locus_tag="AGROH133_05369" /note="Lumazine binding domain; Region: Lum_binding; pfam00677" /db_xref="CDD:144321" gene 1112428..1113060 /gene="rhtB" /locus_tag="AGROH133_05370" /db_xref="GeneID:10266864" CDS 1112428..1113060 /gene="rhtB" /locus_tag="AGROH133_05370" /note="Lysine exporter protein (LYSE/YGGA); Putative threonine efflux protein" /codon_start=1 /transl_table=11 /product="RhtB family transporter" /protein_id="YP_004278408.1" /db_xref="GI:325292544" /db_xref="GeneID:10266864" /translation="MPSFELLTAFFITTALFAYIPGPAMLYAAAQIMARGRFAGLMAV LGIHVGCYFHIVASAAGLSVLFQAVPWLYLAVKLCGALYLIWLGFSMLRSKLEGEAVN LTIEPKSARRAFIDSIIVDVLNPKTALFFLAFLPQFVDPAAAFPIWLQLLILGIAVNF IFSSADLVGVLLAGAMVGRLKRSSRVQALARRTAGTVLMGLGVHLAFQKT" misc_feature 1112434..1113054 /gene="rhtB" /locus_tag="AGROH133_05370" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene 1113225..1113671 /gene="ribH" /locus_tag="AGROH133_05377" /db_xref="GeneID:10266865" CDS 1113225..1113671 /gene="ribH" /locus_tag="AGROH133_05377" /EC_number="2.5.1.9" /note="RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; Riboflavin synthase beta-chain" /codon_start=1 /transl_table=11 /product="riboflavin synthase beta chain" /protein_id="YP_004278409.1" /db_xref="GI:325292545" /db_xref="GeneID:10266865" /translation="MSKPHLLIVEARFYDDMADALLEGAKFALDEAGATYDIITVPGA LEIPAAIAMALDGGDNEGTEYDGFVALGMVIRGETYHFDIVSNESSRALMDLAVSESL AIGNGILTVENDDQAWARVRRSDKDKGGFAARAALTMIELKKKLGG" misc_feature 1113243..1113644 /gene="ribH" /locus_tag="AGROH133_05377" /note="lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209" /db_xref="CDD:187742" misc_feature order(1113243..1113245,1113261..1113263,1113339..1113350, 1113357..1113362,1113366..1113374,1113378..1113386, 1113390..1113392,1113417..1113419,1113450..1113452, 1113456..1113461,1113465..1113467,1113471..1113476, 1113480..1113488,1113492..1113500,1113504..1113518, 1113525..1113530,1113540..1113542,1113546..1113548, 1113552..1113554,1113558..1113560,1113570..1113572, 1113582..1113584,1113606..1113608,1113615..1113617, 1113627..1113629,1113636..1113641) /gene="ribH" /locus_tag="AGROH133_05377" /note="homopentamer interface [polypeptide binding]; other site" /db_xref="CDD:187742" misc_feature order(1113261..1113266,1113351..1113362,1113438..1113455, 1113459..1113461,1113465..1113470,1113537..1113551, 1113582..1113584,1113606..1113608,1113615..1113617) /gene="ribH" /locus_tag="AGROH133_05377" /note="active site" /db_xref="CDD:187742" gene 1113676..1114173 /gene="nusB" /locus_tag="AGROH133_05378" /db_xref="GeneID:10266866" CDS 1113676..1114173 /gene="nusB" /locus_tag="AGROH133_05378" /note="Regulates rRNA biosynthesis by transcriptional antitermination; Transcription termination factor" /codon_start=1 /transl_table=11 /product="transcription antitermination protein NusB" /protein_id="YP_004278410.1" /db_xref="GI:325292546" /db_xref="GeneID:10266866" /translation="MSDVENGGEPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVME VVAEYEAHRLGQEVDGDTYLKADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRL DATVRAILRAGAFEILERKDVPVAVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVR GEAKR" misc_feature 1113736..1114149 /gene="nusB" /locus_tag="AGROH133_05378" /note="RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-...; Region: NusB_Sun; cl00223" /db_xref="CDD:189070" misc_feature 1113742..1113750 /gene="nusB" /locus_tag="AGROH133_05378" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:29564" gene 1114195..1115418 /locus_tag="AGROH133_05379" /db_xref="GeneID:10266867" CDS 1114195..1115418 /locus_tag="AGROH133_05379" /note="Major facilitator superfamily MFS-1; Arabinose efflux permease" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004278411.1" /db_xref="GI:325292547" /db_xref="GeneID:10266867" /translation="MSAVSVPGLEVQLDEAKRNVFLLTAAQAIMGSAAPMSFSVGALA GYQLLGADKSLATAPLTGFNIGVALGAICVAAASRFLGRKAGFMVGALMCSIGGGIAA VALFRSDFWLFAIGLLLIGISGGFTQKIRFAAADASPSFYKPKAISWILAGGIVSAII GPQLAIFGKDVFAPVTFAGAFIALVPLGIIAIAILSFLKLPDPKAASIHAQAARPLSE IVRTHRFVTGMVCGIGSYALMTFMMTGAPLAMVVGCGFPTELATLGIQWHVLAMFGPS FFTGMLIARFGAEKIVAAGLVVLMACAVVAHMGIELWNFWAALILLGLGWNFGFIGAT AIITSSYRPHEADKVQGFHDIVLFGTVALSSFSSGKVFTAWGWSVMNLVIWPVAGLCL VLVASLLLTPRRNAA" misc_feature 1114252..1115343 /locus_tag="AGROH133_05379" /note="Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814" /db_xref="CDD:32643" misc_feature 1114300..1115346 /locus_tag="AGROH133_05379" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(1114306..1114314,1114318..1114323,1114372..1114374, 1114381..1114386,1114393..1114395,1114405..1114410, 1114414..1114419,1114561..1114566,1114573..1114578, 1114585..1114590,1114597..1114599,1114633..1114638, 1114645..1114650,1114666..1114668,1114900..1114902, 1114909..1114914,1114921..1114926,1114933..1114935, 1114975..1114977,1114987..1114989,1114999..1115001, 1115008..1115010,1115020..1115022,1115161..1115163, 1115170..1115175,1115182..1115184,1115194..1115199, 1115206..1115208,1115239..1115244,1115251..1115256, 1115263..1115268,1115275..1115277) /locus_tag="AGROH133_05379" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 1115638..1117776 /gene="hppA" /locus_tag="AGROH133_05392" /db_xref="GeneID:10266868" CDS 1115638..1117776 /gene="hppA" /locus_tag="AGROH133_05392" /EC_number="3.6.1.1" /note="pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; Inorganic pyrophosphatase" /codon_start=1 /transl_table=11 /product="H+ translocating pyrophosphate synthase" /protein_id="YP_004278412.1" /db_xref="GI:325292548" /db_xref="GeneID:10266868" /translation="MTVIPIVILCGVLSVVYAAWTTRSVLAADQGNERMREIAGFIRE GAQAYLTRQYLTIAIVGLIVAVLAWYLLSALAAIGFIIGAVLSGAAGFIGMHVSVRAN LRTAQAASHSLAAGLDIAFKSGAITGMLVAGLALLGVSIYYFILTSVLGHAPGSREVI DALVSLGFGASLISIFARLGGGIFTKGADVGGDLVGKVEAGIPEDDPRNPATIADNVG DNVGDCAGMAADLFETYAVSVVATMVLAAIFFAGTPILESAMVYPLAICGACILTSIA GTFFVKLGTNNSIMGALYKGLIATGVFSIAGLAVATYATVGWGTIGTVAGMEITGTNL FLCGLVGLVVTALIVVITEYYTGTNKRPVNSIAQASVTGHGTNVIQGLAVSLESTALP ALVIVGGIIGTYQLGGLFGTGIAVTAMLGLAGMIVALDAFGPVTDNAGGIAEMAGLDP DVRKATDALDAVGNTTKAVTKGYAIGSAGLGALVLFAAYSNDLSYFAANGDTYPYFKD IGEISFSLANPYVVAGLLFGGLIPYLFGGIAMTAVGKAASSIVEEVRRQFREKPGIMA GTEKPDYGKAVDLLTKAAIKEMIIPSLLPVLAPLVVYFGVLLISGSKASAFAALGASL LGVIINGLFVAISMTSGGGAWDNAKKSFEDGFIDKDGVRHVKGSDAHKASVTGDTVGD PYKDTAGPAVNPAIKITNIVALLLLAVLAH" misc_feature 1115638..1117740 /gene="hppA" /locus_tag="AGROH133_05392" /note="Inorganic pyrophosphatase [Energy production and conversion]; Region: OVP1; cl11452" /db_xref="CDD:187048" misc_feature 1115710..1117740 /gene="hppA" /locus_tag="AGROH133_05392" /note="membrane-bound proton-translocating pyrophosphatase; Validated; Region: hppA; PRK00733" /db_xref="CDD:179102" gene complement(1117851..1118381) /locus_tag="AGROH133_05409" /db_xref="GeneID:10266869" CDS complement(1117851..1118381) /locus_tag="AGROH133_05409" /note="SmpA / OmlA family; Small protein A (tmRNA-binding)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278413.1" /db_xref="GI:325292549" /db_xref="GeneID:10266869" /translation="MIAVGEKQLSKQKSASHGKILGKTAIAIVVASTLLSACTSTTDV FHNGYVMDEQSLQLIPEGSSREQVLLTMGTPSTTATFGNEVFYYISQKRVRRAAFMKP TLVEQNILAIYFNKDGVIERKANYALQDGKVFDTISRTTPTGGKDLTFLQQLLSGGTS GANIAKSILGQGGNTP" misc_feature complement(1117911..>1118255) /locus_tag="AGROH133_05409" /note="SmpA / OmlA family; Region: SmpA_OmlA; cl01095" /db_xref="CDD:194033" gene 1118652..1119191 /locus_tag="AGROH133_05410" /db_xref="GeneID:10266870" CDS 1118652..1119191 /locus_tag="AGROH133_05410" /note="Uncharacterised conserved protein UCP032079; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278414.1" /db_xref="GI:325292550" /db_xref="GeneID:10266870" /translation="MIFGLFRQKNNNRAIVDRQYAILTAAARTPAFYLDLGVPDTVMG RFEMLSIIMILYFRRTKSSGVSGQEIAQEIVDAFFQDIDHSIRELGIGDQGVPKRMKK FAGMFYGRLESYAAALDASDPVALAAALRRNIYPQTDEKAPELDGLAGWMMEASSNLS AGSEETIATGSLKLPLPGL" misc_feature 1118652..1119182 /locus_tag="AGROH133_05410" /note="Ubiquinol-cytochrome C chaperone; Region: Ubiq_cyt_C_chap; cl12045" /db_xref="CDD:196316" gene 1119200..1119763 /locus_tag="AGROH133_05411" /db_xref="GeneID:10266871" CDS 1119200..1119763 /locus_tag="AGROH133_05411" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278415.1" /db_xref="GI:325292551" /db_xref="GeneID:10266871" /translation="MNARHAANDDLPFSYPVKVGHISANPVRIGLEANAEELKALAKF WDVVSVEYLKAELQVTRWKRDGVKIKGEVHAAVTQSCVVTLEPVSSKIDESVEHIFVP EGSKLARMVTNEEGEIVLDPNGPDIPDQFTGDSIDVGATVAEFAALAIDPYPRKSDIE FTDTTENEPEEEKRPSPFAVLKDWKKD" misc_feature 1119404..1119754 /locus_tag="AGROH133_05411" /note="Uncharacterized ACR, COG1399; Region: DUF177; cl00616" /db_xref="CDD:193886" gene 1119863..1120924 /gene="plsX" /locus_tag="AGROH133_05412" /db_xref="GeneID:10266872" CDS 1119863..1120924 /gene="plsX" /locus_tag="AGROH133_05412" /note="involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; Fatty acid/phospholipid biosynthesis enzyme" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate acyltransferase PlsX" /protein_id="YP_004278416.1" /db_xref="GI:325292552" /db_xref="GeneID:10266872" /translation="MIRIAIDVMGGDFGPDVAIPGAAKALERHNDVTFLLYGQKSKCD PILAQYPALREKSVFHDCEISVAMDEKPSQALRRGRYVSSMWRAIEAVKLGEADVVVS AGNTGALMAMAKFCLRTMARVERPAIAGIWPTLKGESIVLDVGATIGADSQQLLDFAL MGGAMARALFDIDRPTVGLLNVGVEEVKGQEEVREAGRLIREADLGTIDYRGFVEGDD IGKGTVDVVVTEGFTGNIALKAAEGTARQITTLLREAISRSFFAKIGYILAKSAFDVL REKMDPRKVNGGVFLGLNGIVIKSHGGTDAIGFASAVDVGYDMVHNGLTAKIENDLKI YHARRLPPPAPEALVADEE" misc_feature 1119863..1120861 /gene="plsX" /locus_tag="AGROH133_05412" /note="Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl00390" /db_xref="CDD:193798" gene 1120929..1121900 /gene="fabH" /locus_tag="AGROH133_05413" /db_xref="GeneID:10266873" CDS 1120929..1121900 /gene="fabH" /locus_tag="AGROH133_05413" /EC_number="2.3.1.41" /note="FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-[acyl-carrier-protein] synthase III" /codon_start=1 /transl_table=11 /product="3-oxoacyl-acyl carrier protein synthase III" /protein_id="YP_004278417.1" /db_xref="GI:325292553" /db_xref="GeneID:10266873" /translation="MIRSIVRGFGAALPKRVMTNSEIEGVVETSDEWIVQRTGIRQRY IAGEGETTASLGEAAARAALDNAGLTPDDIDLIILATSTPDNTFPATAVNIQNRLGMT HGFAFDMQAVCSGFVYAVATADLYIRGGMAKRVLVIGAETFSRILDWKDRTTCVLFGD GAGALVIEAGEGEGTSSDRGILTSQLRSDGSHKDKLYVDGGPSTTGTVGHLRMEGREV FKHAVGMITDVIEQAFEATGTTADDLDWLVPHQANKRIIDGSAKKLNIDPEKVVITVD KHGNTSAASIPLALAVAASDGRIKKGDLVMLEAMGGGFTWGAVLLRW" misc_feature 1120929..1121897 /gene="fabH" /locus_tag="AGROH133_05413" /note="3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352" /db_xref="CDD:181792" misc_feature 1120950..1121891 /gene="fabH" /locus_tag="AGROH133_05413" /note="Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830" /db_xref="CDD:29417" misc_feature order(1121172..1121174,1121178..1121180,1121205..1121207, 1121214..1121216,1121238..1121258,1121280..1121282, 1121289..1121294,1121301..1121306,1121361..1121363, 1121484..1121501,1121517..1121522,1121865..1121867) /gene="fabH" /locus_tag="AGROH133_05413" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29417" misc_feature order(1121265..1121267,1121676..1121678,1121766..1121768) /gene="fabH" /locus_tag="AGROH133_05413" /note="active site" /db_xref="CDD:29417" misc_feature 1121685..1121687 /gene="fabH" /locus_tag="AGROH133_05413" /note="CoA binding pocket [chemical binding]; other site" /db_xref="CDD:29417" gene 1122144..1122482 /gene="ihfA" /locus_tag="AGROH133_05414" /db_xref="GeneID:10266874" CDS 1122144..1122482 /gene="ihfA" /locus_tag="AGROH133_05414" /note="This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Bacterial nucleoid DNA-binding protein" /codon_start=1 /transl_table=11 /product="integration host factor subunit alpha" /protein_id="YP_004278418.1" /db_xref="GI:325292554" /db_xref="GeneID:10266874" /translation="MAGKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRG EVVKLSSFATFQIREKNERIGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARK TKQKGQKAGA" misc_feature 1122162..1122422 /gene="ihfA" /locus_tag="AGROH133_05414" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature order(1122162..1122167,1122174..1122176,1122183..1122185, 1122195..1122197,1122237..1122239,1122246..1122251, 1122258..1122263,1122273..1122287,1122294..1122299, 1122312..1122314,1122378..1122383,1122393..1122395, 1122399..1122401,1122420..1122422) /gene="ihfA" /locus_tag="AGROH133_05414" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" misc_feature order(1122162..1122170,1122234..1122236,1122279..1122281, 1122285..1122287,1122291..1122296,1122303..1122305, 1122315..1122317,1122321..1122326,1122330..1122332, 1122339..1122350,1122378..1122380,1122390..1122392, 1122396..1122398,1122405..1122407) /gene="ihfA" /locus_tag="AGROH133_05414" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" gene 1122758..1123291 /locus_tag="AGROH133_05415" /db_xref="GeneID:10266875" CDS 1122758..1123291 /locus_tag="AGROH133_05415" /note="DNA binding; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_004278419.1" /db_xref="GI:325292555" /db_xref="GeneID:10266875" /translation="MDKSPDAFRTISEVADELNLPQHVLRFWETRFPQIKPMKRGGGR RYYRPDDIDLLKGIRHLLYDHGYTIKGVQKLLKTNGNRFVAAIASGDLATMEAIMAAS GEKEVAEPRVLDPDGDEVVGRPKAKPSGRFFGFGGGNSDTEISVGKSGIGKDDQALLQ EALFDLLECKRLLDQVR" misc_feature 1122782..1123042 /locus_tag="AGROH133_05415" /note="Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators; Region: HTH_MlrA-like_sg2; cd04765" /db_xref="CDD:133393" misc_feature order(1122785..1122793,1122833..1122835,1122884..1122892) /locus_tag="AGROH133_05415" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133393" gene 1123408..1124136 /locus_tag="AGROH133_05417" /db_xref="GeneID:10266876" CDS 1123408..1124136 /locus_tag="AGROH133_05417" /note="Micrococcal nuclease (thermonuclease) homologs" /codon_start=1 /transl_table=11 /product="nuclease" /protein_id="YP_004278420.1" /db_xref="GI:325292556" /db_xref="GeneID:10266876" /translation="MSNRKPTTRRRTAKKSAGGSVWPWVLMLGVVAGGIQAYEHRDSL MPQRHVAKATSTTTNSPKIAVAAKRETAAPEKVAAIRPASPVSPINGPVPPRSIAMPP AAQQSQVAAILPETRPSVEKVSLGEKSGAFAFCGRSGLTNCVADGNTFWMKGVKMQLA GIEVPQIDRARCMEERQRGFIAKVRLRDMLNAGAFDVASSATAGGQAMERKRISRSGV SFADQLVREGLAHPVSAKNQSWCG" misc_feature <1123513..>1123782 /locus_tag="AGROH133_05417" /note="DNA polymerase III subunits gamma and tau; Validated; Region: PRK07994" /db_xref="CDD:181191" gene 1124278..1124363 /locus_tag="AGROH133_05420" /db_xref="GeneID:10266877" tRNA 1124278..1124363 /locus_tag="AGROH133_05420" /product="tRNA-Leu" /anticodon=(pos:1124312..1124314,aa:Leu) /db_xref="GeneID:10266877" gene 1124611..1127115 /locus_tag="AGROH133_05421" /db_xref="GeneID:10266878" CDS 1124611..1127115 /locus_tag="AGROH133_05421" /note="ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, E1-E2 ATPase; Cation transport ATPase" /codon_start=1 /transl_table=11 /product="heavy metal-transporting ATPase" /protein_id="YP_004278421.1" /db_xref="GI:325292557" /db_xref="GeneID:10266878" /translation="MSQIQIQANHSIAIEGMTCASCVGRVEKAIAKVPGVVKASVNLA TERADIAFSGAPNVSAVVDAVRNAGYSVDEKTIELDIEGMTCASCVGRVEKALKAVSG VSDASVNLATERATVRVAGNAVSAARLAEAISQAGYKANEIVADKARGDEPDRREAEL RGLKISLATAVALTLPVFILEMGSHLVPAIHDFVMETVGMRESWYLQFALTTLVLFGP GLRFFKKGIPALLRLAPDMNSLVVLGTSAAWGFSVVATFVPEILPRGTANVYYEAAAV IVTLILLGRFLEARAKGRTSEAIKRLVGLQAKSARVMRNGETIDVPLQDVATGDVIVV RPGEKVPVDGLVLDGSSYVDESMITGEPVPVTKTAGSEVVGGTVNRNGSFTFRATKVG GDTLIAQIIRMVEEAQADKLPIQALVDKVTNWFVPAVMLAALATFIVWFILGPDPALT FALVNAVAVLIIACPCAMGLATPTSIMVGTGRAAEMGVLFRRGDALQTLRDADVIAVD KTGTLTLGKPTLVHFTTTEGFDQDEVLRLVASLESRSEHPIAEAIVEAAKHGGLTLAD AAGFEATPGFGVAATVDGRKVEAGADRFMVKLGYDIAKFADDADRLGREGQSPLYAAV DGRLAAIIAVADPIKPTTPEAIAALHALGLKVTMITGDNRRTAEAIARRLGIDEVVAE VLPDGKVEAVKRLAADGRRVAFVGDGINDAPALAAADVGLAIGTGTDVAIESADVVLM SGDLRGVANAIALSKATIRNIRQNLFWAFAYNAALVPVAAGILYPANGVLLSPVLAAG AMALSSVFVLTNALRLKSFRPPLLDRSSGMQLAAAE" misc_feature 1124641..1124826 /locus_tag="AGROH133_05421" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature order(1124659..1124667,1124674..1124676) /locus_tag="AGROH133_05421" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature 1124833..1127070 /locus_tag="AGROH133_05421" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature 1124842..1125030 /locus_tag="AGROH133_05421" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature order(1124860..1124868,1124875..1124877) /locus_tag="AGROH133_05421" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature 1125436..1126104 /locus_tag="AGROH133_05421" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature 1126489..1126728 /locus_tag="AGROH133_05421" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene 1127128..1128150 /locus_tag="AGROH133_05430" /db_xref="GeneID:10266879" CDS 1127128..1128150 /locus_tag="AGROH133_05430" /EC_number="1.14.12.12" /note="naphthalene 1,2-dioxygenase; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases" /codon_start=1 /transl_table=11 /product="naphthalene 1,2-dioxygenase" /protein_id="YP_004278422.1" /db_xref="GI:325292558" /db_xref="GeneID:10266879" /translation="MTPGNTVYLPRIGRSIVAAQGETILQAALAAGISYPHGCRMGRC GACKSHLVSGEIDLLKHTPFSLTEEEKAEGLTLACRAVPLSDVTIGWLDGEDEFADIP AGRFDGVIAEAVDATHDIKLIRIRLDDRELFTFKAGQYVRLLYPDCSPRDYSIASRID EDLIEFHIRHVPGGVTSGHIFANAKAGDPVVLVGPFGSSYLREKHCGPILGIAGGSGL APVKAVVEAALATDRTTGRQRPIHVYFGARAERDLYMVDRFEELAVSHGNLSFVPVLS NEYHAQMRRGYVGSAVADDFDDLDGWKAYLAGPPAMIEATVPQLLARGIRTADIHADV FFTPER" misc_feature 1127143..1127394 /locus_tag="AGROH133_05430" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature 1127164..1128132 /locus_tag="AGROH133_05430" /note="CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated; Region: PRK07609" /db_xref="CDD:181058" misc_feature order(1127230..1127235,1127242..1127244,1127251..1127253, 1127257..1127268,1127359..1127364) /locus_tag="AGROH133_05430" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(1127242..1127244,1127257..1127259,1127266..1127268, 1127362..1127364) /locus_tag="AGROH133_05430" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature 1127455..1128132 /locus_tag="AGROH133_05430" /note="The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S]...; Region: O2ase_reductase_like; cd06187" /db_xref="CDD:99784" misc_feature order(1127545..1127547,1127578..1127589,1127626..1127634, 1127638..1127640,1127650..1127658,1127773..1127775, 1127782..1127784,1128124..1128126,1128130..1128132) /locus_tag="AGROH133_05430" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99784" misc_feature order(1127578..1127580,1127584..1127589) /locus_tag="AGROH133_05430" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99784" misc_feature order(1127647..1127649,1127656..1127658,1127665..1127667, 1127686..1127688,1127710..1127712,1127716..1127718) /locus_tag="AGROH133_05430" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99784" misc_feature order(1127758..1127760,1127770..1127781,1127785..1127787) /locus_tag="AGROH133_05430" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99784" misc_feature order(1127773..1127778,1127863..1127871,1128049..1128054) /locus_tag="AGROH133_05430" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99784" gene 1128162..1128650 /gene="cueR" /locus_tag="AGROH133_05431" /db_xref="GeneID:10266880" CDS 1128162..1128650 /gene="cueR" /locus_tag="AGROH133_05431" /note="Cu(I)-responsive transcriptional regulator, MerR, DNA binding; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_004278423.1" /db_xref="GI:325292559" /db_xref="GeneID:10266880" /translation="MNIGTAATASGVSAKMIRHYETIGLIKSANRTESGYRVYTTNDL ETLRFIRRGRDLGFSIEKIRQLMTLWRDPGGASCDVKRIVMEHVVDLEAKMHALREMA DTLRNIATYCPDNGEPDCPIIQDLAQSEDPDFTPVAILPKRSGMLKGTSGVVTDLPRL MK" misc_feature 1128162..1128542 /gene="cueR" /locus_tag="AGROH133_05431" /note="Cu(I)-responsive transcriptional regulator; Region: CueR; TIGR02044" /db_xref="CDD:131099" misc_feature 1128162..1128542 /gene="cueR" /locus_tag="AGROH133_05431" /note="Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators; Region: HTH_CueR; cd01108" /db_xref="CDD:133383" misc_feature order(1128165..1128173,1128213..1128215,1128264..1128272) /gene="cueR" /locus_tag="AGROH133_05431" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133383" misc_feature order(1128306..1128308,1128315..1128317,1128327..1128332, 1128357..1128359,1128369..1128371,1128390..1128395, 1128402..1128404,1128411..1128413,1128423..1128425, 1128441..1128443,1128453..1128455,1128462..1128467, 1128486..1128488,1128501..1128515,1128519..1128521, 1128525..1128527,1128534..1128539) /gene="cueR" /locus_tag="AGROH133_05431" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133383" misc_feature order(1128390..1128392,1128495..1128497,1128519..1128521) /gene="cueR" /locus_tag="AGROH133_05431" /note="copper binding site [ion binding]; other site" /db_xref="CDD:133383" gene 1128723..1129667 /gene="nikB" /locus_tag="AGROH133_05432" /db_xref="GeneID:10266881" CDS 1128723..1129667 /gene="nikB" /locus_tag="AGROH133_05432" /note="nickel ABC transporter, permease subunit NikB; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components" /codon_start=1 /transl_table=11 /product="Nickel transport system permease protein nikB" /protein_id="YP_004278424.1" /db_xref="GI:325292560" /db_xref="GeneID:10266881" /translation="MWIQIIQRFLILCLMLMIVSVIAFLLPYMAGGDPARTILFSRMR DTALDPHAVEALRLSLGLDRPLYVQYFAWLSGALRGDLGFSFTSSQPVAGELLRSLGV SVTLALTALAIAVAVALPLGTLAAMRPGGRLDNFATLMIQTFVATPEYWFAPMSALVF SLYLGWLPSAGWDSWRSLVLPALTLTLRPLAYFTQVTRAAMAEVLRAPYITAARSRGL GMHGTVMRHGIRNGSLPIVTFFALWLAGLLGGSVVVEVIFAIPGMGRLLYDAVVNRDI PMLQGGFICIVALSILINTLADGLYVLINPAMRGQHDH" misc_feature 1128723..1129649 /gene="nikB" /locus_tag="AGROH133_05432" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" misc_feature 1128729..1129658 /gene="nikB" /locus_tag="AGROH133_05432" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 1129657..1130562 /gene="nikC" /locus_tag="AGROH133_05439" /db_xref="GeneID:10266882" CDS 1129657..1130562 /gene="nikC" /locus_tag="AGROH133_05439" /note="nickel ABC transporter, permease subunit NikC; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components" /codon_start=1 /transl_table=11 /product="nickel ABC transporter, permease subunit NikC" /protein_id="YP_004278425.1" /db_xref="GI:325292561" /db_xref="GeneID:10266882" /translation="MTISHFPSAPVAAMPMTLPKRPSTLFRFTDFIRRRHWTFYAGSA IFLVIIVLLVIAPWISPYNPAQQSLRLRLNAPSAAYWLGTDHLGRDVLSRLLIGGRFT VTIAAITVILSVAIGTFIGIISGRSRGVVDEVLMRVVDLLIAIPDVVIAIFLVAIFGP GYGTLIASLTIVGWTPFARLARGLTLSINSREYMRAAEVLGCTRRFIIFRHVIPNTIW PIAAVAFLRFGHKLITVGGLSFLGLGVQPPAADWALMLADAQAYAERMPILVIAPGLA IFLSALSVTWIGHGLNMDTRKPNGH" misc_feature 1129822..1130529 /gene="nikC" /locus_tag="AGROH133_05439" /note="nickel ABC transporter, permease subunit NikC; Region: nickel_nikC; TIGR02790" /db_xref="CDD:131837" misc_feature 1129954..1130490 /gene="nikC" /locus_tag="AGROH133_05439" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1129999..1130004,1130011..1130016,1130029..1130031, 1130059..1130070,1130074..1130103,1130110..1130115, 1130119..1130121,1130170..1130175,1130179..1130181, 1130185..1130187,1130194..1130199,1130203..1130205, 1130215..1130220,1130227..1130229,1130278..1130280, 1130320..1130325,1130332..1130334,1130353..1130364, 1130371..1130376,1130413..1130418,1130446..1130451, 1130458..1130463,1130467..1130472,1130479..1130484) /gene="nikC" /locus_tag="AGROH133_05439" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1130077..1130121,1130353..1130370) /gene="nikC" /locus_tag="AGROH133_05439" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1130119..1130121,1130155..1130157,1130371..1130373, 1130407..1130409,1130416..1130418,1130446..1130448) /gene="nikC" /locus_tag="AGROH133_05439" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1130230..1130268,1130284..1130289,1130299..1130301) /gene="nikC" /locus_tag="AGROH133_05439" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1130704..1131768 /gene="nikD" /locus_tag="AGROH133_05447" /db_xref="GeneID:10266883" CDS 1130704..1131768 /gene="nikD" /locus_tag="AGROH133_05447" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component" /codon_start=1 /transl_table=11 /product="nickel import ATP-binding protein NikD" /protein_id="YP_004278426.1" /db_xref="GI:325292562" /db_xref="GeneID:10266883" /translation="MNIEGHTHANTAIAPERTPLLEIEDLHVSVPSANGRKFVISGLT LSVDAGEVVALVGESGSGKSMTALSLMRLLPQGAEINSGRISFAGRDILALSPSELDA LRGADIGMLFQQPQAMLDPTSRVRTQVAEPLWVHRKMSRHAALGRVVGMLSDVGIPDP SARAQCFAHELSGGMAQRVMIAAALSGNPQLLIADEPTTALDVTVQAQILRLLDDERR KRRLATLLITHDLSVVAAFADRIAVMYAGRIVEEGPTQAILKAPQHPYTKALISCSLL TTDSEGQLLTIPGSSSQAHDMSCGCRFHPRCALAQSAGMGGRCMATEPDLNALPEGRK ARCWAVDDDHAGSHASHTVC" misc_feature 1130761..1131717 /gene="nikD" /locus_tag="AGROH133_05447" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444" /db_xref="CDD:30793" misc_feature 1130761..1131462 /gene="nikD" /locus_tag="AGROH133_05447" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 1130872..1130895 /gene="nikD" /locus_tag="AGROH133_05447" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(1130881..1130886,1130890..1130898,1131040..1131042, 1131286..1131291,1131388..1131390) /gene="nikD" /locus_tag="AGROH133_05447" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 1131031..1131042 /gene="nikD" /locus_tag="AGROH133_05447" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 1131214..1131243 /gene="nikD" /locus_tag="AGROH133_05447" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 1131274..1131291 /gene="nikD" /locus_tag="AGROH133_05447" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 1131298..1131309 /gene="nikD" /locus_tag="AGROH133_05447" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 1131376..1131396 /gene="nikD" /locus_tag="AGROH133_05447" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature 1131445..1131720 /gene="nikD" /locus_tag="AGROH133_05447" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene 1131781..1132791 /gene="nikE" /locus_tag="AGROH133_05448" /db_xref="GeneID:10266884" CDS 1131781..1132791 /gene="nikE" /locus_tag="AGROH133_05448" /note="ABC-type oligopeptide transport system, ATPase component" /codon_start=1 /transl_table=11 /product="nickel import ATP-binding protein NikE" /protein_id="YP_004278427.1" /db_xref="GI:325292563" /db_xref="GeneID:10266884" /translation="MLSTVKTPNQPQADGKIKPYVVANNLCKYYPISGFGNRVVKSVD DVSLTIGEGEVLGLVGESGCGKSTVAGLITRLTNATKGEVSIGDHDILHMQGETLRRM RRVVQLVFQDPYSALDPRMRIGQSMEAPLAQHGIGTREERIARVFKMLEEVGLDASYY DRYPSQCSGGQLQRVVIGRALLLNPSFLVCDEPTSALDASMRTQILNLLMDMKRRHGL TVLMISHDVRVVRYLCDRIAVMYLGRIVEIADRDELFRAPKHPYTKALIASSMLDETG LYAPEMLLDGDLPSPLNPPSGCKFHTRCKYATQICSEQEPVLEDVAGEHFARCHHWRE WG" misc_feature 1131832..1132773 /gene="nikE" /locus_tag="AGROH133_05448" /note="dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308" /db_xref="CDD:183084" misc_feature 1131847..1132527 /gene="nikE" /locus_tag="AGROH133_05448" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature 1131958..1131981 /gene="nikE" /locus_tag="AGROH133_05448" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature order(1131967..1131972,1131976..1131984,1132111..1132113, 1132351..1132356,1132453..1132455) /gene="nikE" /locus_tag="AGROH133_05448" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature 1132102..1132113 /gene="nikE" /locus_tag="AGROH133_05448" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature 1132279..1132308 /gene="nikE" /locus_tag="AGROH133_05448" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature 1132339..1132356 /gene="nikE" /locus_tag="AGROH133_05448" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature 1132363..1132374 /gene="nikE" /locus_tag="AGROH133_05448" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature 1132441..1132461 /gene="nikE" /locus_tag="AGROH133_05448" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature 1132510..1132770 /gene="nikE" /locus_tag="AGROH133_05448" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene 1133031..1134524 /gene="nikA" /locus_tag="AGROH133_05449" /db_xref="GeneID:10266885" CDS 1133031..1134524 /gene="nikA" /locus_tag="AGROH133_05449" /note="nickel ABC transporter, periplasmic nickel-binding protein; ABC-type dipeptide transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="nickel ABC transporter, periplasmic nickel-binding protein" /protein_id="YP_004278428.1" /db_xref="GI:325292564" /db_xref="GeneID:10266885" /translation="MIKHVLLATSAIVFSFSVQTAKADTITYDDYTGVKTGWQMASDD AYLGSRAGCFESMVRVGYDTALEPGLAESWTQTSPKVWEFKLRKGVKFQNGEPLNAKA AVNALTNLLKAPVPARAFSPKLVAAVEVGGDDIVKITTIEPSVLLPAQMASPATSILA PSAYKDGKVDPIGTCTGPFKITKVDASQYMELTANHDYWNGMPKLSGGRVNFIPDADT RATQIRSGEVQISRVIPPWAVKTIVATKGVKVAPITVPRITEMLLNNSKPPFKDIKVR QAIRAAIDTAGIADSIYEGMVKPATMPFAPGEPWAPQNVTPAYDIEKAKALLKEAGIA PGSLKLTLLAYTERTELKDVAAVIQAQLQEIGIKVDVRVADYTAIEPDLLSGNFDMVL LSRGYATDVAEPIGFLNADYTCGGGYNISHYCSEETDKLIKSAYMAAEPAKRYAIYAE AAKRIYDEAVTVYLVHETAFDAYSDKVENFKPHPINYFIMTKDLAVK" misc_feature 1133136..1134494 /gene="nikA" /locus_tag="AGROH133_05449" /note="The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_3; cd08490" /db_xref="CDD:173855" misc_feature 1133226..1134287 /gene="nikA" /locus_tag="AGROH133_05449" /note="Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496" /db_xref="CDD:189574" gene complement(1134916..1135170) /locus_tag="AGROH133_05451" /db_xref="GeneID:10266886" CDS complement(1134916..1135170) /locus_tag="AGROH133_05451" /note="Heavy metal transport/detoxification protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278429.1" /db_xref="GI:325292565" /db_xref="GeneID:10266886" /translation="MCTAHQHHPETAAAPVGADLSFHVEDMTCGHCAGVIKGAIEKTV PGAAVHADPASRTVVVGGVSDAARIAEIITAAGYTPEARA" misc_feature complement(1134919..1135113) /locus_tag="AGROH133_05451" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cl00207" /db_xref="CDD:193707" gene complement(1135278..1136735) /gene="trkH" /locus_tag="AGROH133_05452" /db_xref="GeneID:10266887" CDS complement(1135278..1136735) /gene="trkH" /locus_tag="AGROH133_05452" /note="Cation transport protein, potassium uptake protein, TrkH family; Trk-type K+ transport systems, membrane components" /codon_start=1 /transl_table=11 /product="potassium uptake protein" /protein_id="YP_004278430.1" /db_xref="GI:325292566" /db_xref="GeneID:10266887" /translation="MNSNLLRSVIYVASIFGLYLATAMFLPALTDLYYGNDDWTVFAL SGFMCGGFALACALATRAPIASFNKRFGFLLVNVLWLVFSIVGAVPLYLSELDLTPGQ ALFESVSAITTTGSTAISGLDNAPQGILLWRSLLCWLGGIGIVALGLFILPLLRVGGM TFFRMESSDTGNDRPFARLASFTRAFVAIYIIMTIACTVAFDFAGMSHFDALNHAMST VATGGFSTHDASFAYFNNTALLWIATIFLIFGSLPFSVMILLAVRRRLETLRDPQIAV FLGYLCAISIAVGVYHHLRNGVPLDTALSHSFFNMTSILSTGGFASDDYTLWGPFVVV VAFFATFMGGCSGSTAGGIKAYRFLIMFNVVRAGLKKLIYPNAVYSVRYGQQVVDPDT IRTIFLFVSCFIALWIAGSLAMSLMGYDFLTATSGVATALANVGPGIGPIIGPVGNFS TISDPALYLLSVLMLLGRLEILTVLVLLMPIFWRN" misc_feature complement(1135284..1136726) /gene="trkH" /locus_tag="AGROH133_05452" /note="Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: TrkG; COG0168" /db_xref="CDD:30517" misc_feature complement(1135281..1136720) /gene="trkH" /locus_tag="AGROH133_05452" /note="Cation transport protein; Region: TrkH; cl10514" /db_xref="CDD:187005" gene 1136815..1138089 /gene="ilvA" /locus_tag="AGROH133_05464" /db_xref="GeneID:10266888" CDS 1136815..1138089 /gene="ilvA" /locus_tag="AGROH133_05464" /EC_number="4.3.1.19" /note="catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic" /codon_start=1 /transl_table=11 /product="Threonine dehydratase" /protein_id="YP_004278431.1" /db_xref="GI:325292567" /db_xref="GeneID:10266888" /translation="MNFNGLTIVDKQLVEAARREVREIFPETPLQLNEHLSRRYGASI WLKREDLSPVRSYKIRGAFNFLRKAVAKAGKDKVFVCASAGNHAQGFAFACRHFGVHG VVFMPVTTPQQKIDKTRIFGGEFISIRLVGDIFDQCYAAARKYVEDNDAYMVPPFDHQ DIIEGQATVAAEIMDQLPEGTKPDMVVMPVGGGGLSAGLSGFLAGTVEKGNFVFCEPE GAPSLKRSLERGEAVTLPKVDNFVDGAAVARIGDLNFQALKDFPAEQVLLIPENAICV TIIEMLNLEGVVLEPAGALSIAALEKLGREKLEGKTVIVVVSGGNFDFERLPDVKERA MRYTGVKKYFILRLPQRPGALRDFLNLLGPDDDIARFEYLKKSARNFGSILIGIETNA QENFAGLLERFEAAGLGYEDITENEILSNLII" misc_feature 1136821..1138086 /gene="ilvA" /locus_tag="AGROH133_05464" /note="threonine dehydratase; Validated; Region: PRK08639" /db_xref="CDD:181514" misc_feature 1136848..1137783 /gene="ilvA" /locus_tag="AGROH133_05464" /note="Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562" /db_xref="CDD:107205" misc_feature order(1136848..1136850,1136857..1136859,1136866..1136871, 1136962..1136967,1137424..1137429,1137637..1137639, 1137646..1137651,1137658..1137660,1137670..1137678, 1137772..1137783) /gene="ilvA" /locus_tag="AGROH133_05464" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:107205" misc_feature order(1136986..1136988,1137070..1137072,1137385..1137399, 1137766..1137768) /gene="ilvA" /locus_tag="AGROH133_05464" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107205" misc_feature 1136986..1136988 /gene="ilvA" /locus_tag="AGROH133_05464" /note="catalytic residue [active]" /db_xref="CDD:107205" misc_feature 1137835..1138071 /gene="ilvA" /locus_tag="AGROH133_05464" /note="ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141" /db_xref="CDD:195804" gene 1138166..1138474 /locus_tag="AGROH133_05465" /db_xref="GeneID:10266889" CDS 1138166..1138474 /locus_tag="AGROH133_05465" /note="Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278432.1" /db_xref="GI:325292568" /db_xref="GeneID:10266889" /translation="MASFFSKILSAFGSGQSADAPQKAAQSEPHVHGDYLIYATPLKE GGQFRLAGRIEKKDGEETLVHEFVRADVFTSMDDAVEFTIRKAKLIIDQNGASLFPGK " misc_feature 1138169..1138465 /locus_tag="AGROH133_05465" /note="Transcriptional activator HlyU; Region: HlyU; cl02273" /db_xref="CDD:154831" gene 1138592..1139857 /locus_tag="AGROH133_05466" /db_xref="GeneID:10266890" CDS 1138592..1139857 /locus_tag="AGROH133_05466" /note="diguanylate cyclase (GGDEF) domain; Response regulator containing a CheY-like receiver domain and a GGDEF domain" /codon_start=1 /transl_table=11 /product="sensory box/GGDEF family protein" /protein_id="YP_004278433.1" /db_xref="GI:325292569" /db_xref="GeneID:10266890" /translation="MQWANLALFVAEAIVYFSVMTAFLHYRHILGIGVFLTALGVMHF LETYLAAVFYVELPFGVVSPGSSILFAGKLMMILMLYMREDAAVVRQPIYGLFLGNIL TIIMVQIIRFHPTVAIVPGQSVDTGFLDEMGVLMVWGTSLLYIDAIAIILFYEKLGRY LQRHIVLRFAICGVVILSLDQAGFYAALRYMLNAPVDVFYDGWKAKMVAVAIYALLFA IYLKLTAAKGRFLTRRSVADVFNDLTFRERYEELLSRSGRDMLTGVSDRARMELDAPS VVVESLEKKRPVSVLIVDIDHFKTVNDTFGHLQGDEMLREFAAVLKRIVQPHGHLYRF GGEEFVALLPTMTHEGALAFSAGLRTAILKDLQRPDGSPLTVSIGVATAFEDGQLFRA LLSEADARLYAAKNNGRDQVHGRYGMWVG" misc_feature 1139363..1139830 /locus_tag="AGROH133_05466" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1139471..1139473,1139600..1139602) /locus_tag="AGROH133_05466" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1139486..1139488,1139495..1139500,1139510..1139512, 1139522..1139524,1139588..1139590,1139594..1139605) /locus_tag="AGROH133_05466" /note="active site" /db_xref="CDD:143635" misc_feature order(1139576..1139578,1139660..1139662) /locus_tag="AGROH133_05466" /note="I-site; other site" /db_xref="CDD:143635" gene complement(1139900..1140517) /gene="acpD" /locus_tag="AGROH133_05474" /db_xref="GeneID:10266891" CDS complement(1139900..1140517) /gene="acpD" /locus_tag="AGROH133_05474" /EC_number="3.1.4.14" /note="Flavodoxin-like fold; Acyl carrier protein phosphodiesterase" /codon_start=1 /transl_table=11 /product="acyl-carrier-protein phosphodiesterase" /protein_id="YP_004278434.1" /db_xref="GI:325292570" /db_xref="GeneID:10266891" /translation="MSNILLITSSPRGDESVSNKFSGELANKLKAKSASNTLVHRDLA ADPIPHLDTVKTAAIRKAPDQRTAEEAVAADFSDKLVAELMAADTVVIGTGLINFNIY SGLKSWIDNVARAGQTFKYTETGPVGLATGKKVYIVLAAAGVYSEGPAVSMNHAVPYL KTVLGFMGMTDVEVIYVEGLAFGPEAVEKAVAAAEAKVAELAQAA" misc_feature complement(1139966..1140517) /gene="acpD" /locus_tag="AGROH133_05474" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 1140667..1141635 /locus_tag="AGROH133_05475" /db_xref="GeneID:10266892" CDS 1140667..1141635 /locus_tag="AGROH133_05475" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004278435.1" /db_xref="GI:325292571" /db_xref="GeneID:10266892" /translation="MDANPTLDQLQVFLTVAETGSFSAASRALNRAQSVVSYTIANLE AQLEVSLFERNGVRQPRLTDEGRAMLEDARRIVAGLQEMRARAKGLKQGLEAELSVAI STMVPAEAVVAVLRDFRKEFPTVTLSLNVGELGMVMDMVLSRKAGIGIGGALLRQDDE LVVEKVGHSFMLPVVAADHPLAQIERPLVLGDVREEVQLVVTDASGLTKGRDFNVLSY KTWRVSDIATKYQLIKGGLGWGGLPASIVRNDLTNGSLKALDLEAYEQGEYPIFALRR VDSPAGPAGQWLATAFQQRLSACPNQKDFNRIIAGGKQRTISVAAE" misc_feature 1140679..1141566 /locus_tag="AGROH133_05475" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 1140685..1140867 /locus_tag="AGROH133_05475" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 1140955..1141554 /locus_tag="AGROH133_05475" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(1141000..1141005,1141009..1141014,1141021..1141023, 1141033..1141035,1141039..1141059,1141324..1141341, 1141357..1141362,1141366..1141371) /locus_tag="AGROH133_05475" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 1141836..1142387 /locus_tag="AGROH133_05477" /db_xref="GeneID:10266893" CDS 1141836..1142387 /locus_tag="AGROH133_05477" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278436.1" /db_xref="GI:325292572" /db_xref="GeneID:10266893" /translation="MPRSIFSIDIADLSTFAKSLREQIGRLDRQPSHVEMLNLLSRAA GFRNFQHLRASRTPPVASGLPLPQTRPETMPANEGRVLKTARTFDAAGRLVQWPARRS QQELCLWYLWARIPAGRSFSEREFSSFLDGLHLFGDAAMLRRDMAGLRLIRRNRDGSD YQRIEQKPPPELPLLLRIVSDRN" misc_feature 1142109..1142327 /locus_tag="AGROH133_05477" /note="Uncharacterized protein conserved in bacteria (DUF2087); Region: DUF2087; cl01589" /db_xref="CDD:154489" gene complement(1142433..1144421) /gene="cpdB" /locus_tag="AGROH133_05478" /db_xref="GeneID:10266894" CDS complement(1142433..1144421) /gene="cpdB" /locus_tag="AGROH133_05478" /EC_number="3.1.4.16" /note="periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases" /codon_start=1 /transl_table=11 /product="bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein" /protein_id="YP_004278437.1" /db_xref="GI:325292573" /db_xref="GeneID:10266894" /translation="MSSLLALHPITRRSLLGGIAASSALVLLHPFAARAAANQAHLRI METTDIHVHVFPYDYYADKPNDTMGLARTASIIGAIRAEAGNSMLVDNGDFLQGNPLG DYIAYERGMKAGDKHPVINAMNVLGYDCGTLGNHEFNYGLDYMSNTLAGAGFPYVCAN LTKGQLASDPKQDELFFKPYVILEKQIRDGAGVTSPVKVGIIGFVPPQIMMWDSKNLE GKAQTRDIVEAAKAWVPVMKEEGADIVIALSHSGIDGKGQTDRMENASLYLAGVEGID AIFTGHQHLVFPGPKTWDGIEGADAIKGTLMGKPAVMAGFWGSHMGLIDLLLEKDGKS WKIVDFTSEARPIYHRDDNRKVVADVTDKPEVIAAAKADHEAALAYVRRPVGKTSAPL YSYFALVADDPSVQIVSNAQTWYIKDMLKEGQYKDLPVLSAAAPFKSGGRGGADYYTD VPAGDIAIKNVADLYLYPNTVQAVLINGAQVKNWLEMSAGMFNTVEAGAKDAPLLNAD FPSYNFDVIDGVTYQIDISKPAKFDKDGKAVNPDSNRIVNLQFDGKPIDPEQKFVVAT NNYRASGGGKFPDIAADKVIFVAPDTNRDVIVRYIIDQGTINPSADANWSFAPVANTT AIFETGPKGRNYAADIKGAKIEDAGDGAEGFAKFRLVL" misc_feature complement(1142436..1144301) /gene="cpdB" /locus_tag="AGROH133_05478" /note="bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed; Region: cpdB; PRK09420" /db_xref="CDD:181840" misc_feature complement(1143381..1144298) /gene="cpdB" /locus_tag="AGROH133_05478" /note="Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain; Region: MPP_CpdB_N; cd07410" /db_xref="CDD:163653" misc_feature complement(order(1143570..1143572,1143576..1143578, 1143672..1143674,1144014..1144019,1144140..1144142, 1144269..1144271,1144275..1144277)) /gene="cpdB" /locus_tag="AGROH133_05478" /note="active site" /db_xref="CDD:163653" misc_feature complement(order(1143570..1143572,1143576..1143578, 1143672..1143674,1144017..1144019,1144140..1144142, 1144269..1144271,1144275..1144277)) /gene="cpdB" /locus_tag="AGROH133_05478" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163653" misc_feature complement(1142679..1143272) /gene="cpdB" /locus_tag="AGROH133_05478" /note="5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872" /db_xref="CDD:190457" gene complement(1144636..1145010) /locus_tag="AGROH133_05480" /db_xref="GeneID:10266895" CDS complement(1144636..1145010) /locus_tag="AGROH133_05480" /note="Type IV pilus assembly PilZ" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278438.1" /db_xref="GI:325292574" /db_xref="GeneID:10266895" /translation="MMQASETIDLSSEMTNNLNMATRTATRSKTRIYATVHYFSQSTR GRVVDLSATGMALELDGPFAAAKGSRVKVQSEDLGFIEGVVQWQHMNRLGLQLKLSTN TLAQLSSYFRFFHEEVKPTLAR" misc_feature complement(1144720..1144944) /locus_tag="AGROH133_05480" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene complement(1145070..1145537) /locus_tag="AGROH133_05481" /db_xref="GeneID:10266896" CDS complement(1145070..1145537) /locus_tag="AGROH133_05481" /note="Protein of unknown function DUF1203" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278439.1" /db_xref="GI:325292575" /db_xref="GeneID:10266896" /translation="MTDLVFTAMPAKEAEAFRAGAADAYGNPPEKAVSPGGMPCRHCL SQINEGEGMLILAYRPFPSLQPYAETGPVFLHAEACEHYPQTDALPPMLNSPDYIVRG YGTDDRIVYGTGAVTATDEILSRAAHLLERADVAYVHVRSARNNCYQCRIDTA" misc_feature complement(1145079..1145429) /locus_tag="AGROH133_05481" /note="Protein of unknown function (DUF1203); Region: DUF1203; pfam06718" /db_xref="CDD:191592" gene 1145700..1146584 /locus_tag="AGROH133_05482" /db_xref="GeneID:10266897" CDS 1145700..1146584 /locus_tag="AGROH133_05482" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278440.1" /db_xref="GI:325292576" /db_xref="GeneID:10266897" /translation="MFRRFLAAVPLAFVSLTVPIDTQAQVASGLDGLSDDQLQQAVNF VIGNAIFSLYHEGARMLISDFGAPETGSAQAPADQLAGTLILQANEEWLDTALVNATD SWYLARETEALPQHEAPVFSALVPDRSRDRNMACLMVGRDKDGYGDLATMMGLANDEF AKCGAAYPRIASAWEDFLTPHRAQTPSRFTVSYVPPRDPELEPYAIMVKESKVLDLIS RSFGVYGLKGEVKLTAKSCGRPDVYWSAEKREITYCYELGKFQAELIADHLLNSVTED KGSAGGHTPTAVTLEREI" gene 1146639..1147283 /locus_tag="AGROH133_05484" /db_xref="GeneID:10266898" CDS 1146639..1147283 /locus_tag="AGROH133_05484" /note="Dihydrofolate reductase" /codon_start=1 /transl_table=11 /product="bifunctional deaminase-reductase domain protein" /protein_id="YP_004278441.1" /db_xref="GI:325292577" /db_xref="GeneID:10266898" /translation="MPKVVVRNFAISIDGYGAGPDQSLQNPLGVNGEMLHQWAFKTRT FHRMFGKQGGSTGTDEQFSEKSFENIGAWILGRNMFGPIRGAWPDEHWKGWWGEEPPY HVPVFVLTHHARASFAMKGGTVFHFVNTGIKAALDMALEAANGRDVRIGGGVSTIRQY MAGSMIDELHLALAPVFLGKGENLFEGLDLPALGYRCTGTSAGEGATHLIIDKA" misc_feature 1146804..1147217 /locus_tag="AGROH133_05484" /note="Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-...; Region: DHFR; cl00161" /db_xref="CDD:193688" gene complement(1147422..1148843) /gene="sseA" /locus_tag="AGROH133_05485" /db_xref="GeneID:10266899" CDS complement(1147422..1148843) /gene="sseA" /locus_tag="AGROH133_05485" /EC_number="2.8.1.1" /note="Rhodanese-related sulfurtransferase" /codon_start=1 /transl_table=11 /product="thiosulfate sulfurtransferase" /protein_id="YP_004278442.1" /db_xref="GI:325292578" /db_xref="GeneID:10266899" /translation="MSTDKSRFVVSADWVEKQLGTAGFRLVDASWYLPAHKRNGAEEF AAGHLPGAVFFDQDKIADHATGLPHSLPSPEFFAEQAGELGLSDTDTIVVYDGPGFFS APRVWWMLRVMGVRKAYVLDGGLDGWKREGRPLETGTPEIEPATFTPDFNEKRVTSLS TMRGIVDSGEKQIADARGAGRFTGDEAEPRAGMRSGHMPGARSLPATAFSENGHFKDL TAIRKMVADAGIDLGKPVVTSCGSGVTAAVITLALESLGHQDNSLYDGSWSEWGGLED TPVVTGPAEPLPVVSHGPLKAHVTQLEMTAPPKVSLAIPVNIQTALMRVTNIPLHFYR YMYWRVGKRWHWQKRMRMSDAELSAVLKDPNNSVTVLYMNGAPAGFFELNKANDEVTE LSYFGLLEEAIGAGVGKWFLLQALYAAWQDNPKRVTVTTNTLDHPRALQLYQMMGFSP VGTYEAWVEPLSDTELLEISLRN" misc_feature complement(1147992..1148843) /gene="sseA" /locus_tag="AGROH133_05485" /note="Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Region: SseA; COG2897" /db_xref="CDD:32722" misc_feature complement(1148448..1148819) /gene="sseA" /locus_tag="AGROH133_05485" /note="Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but...; Region: TST_Repeat_1; cd01448" /db_xref="CDD:29079" misc_feature complement(1148556..1148558) /gene="sseA" /locus_tag="AGROH133_05485" /note="active site residue [active]" /db_xref="CDD:29079" misc_feature complement(1148028..1148372) /gene="sseA" /locus_tag="AGROH133_05485" /note="Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue; Region: TST_Repeat_2; cd01449" /db_xref="CDD:29080" misc_feature complement(1148124..1148126) /gene="sseA" /locus_tag="AGROH133_05485" /note="active site residue [active]" /db_xref="CDD:29080" gene complement(1148860..1149597) /gene="alaS" /locus_tag="AGROH133_05486" /db_xref="GeneID:10266900" CDS complement(1148860..1149597) /gene="alaS" /locus_tag="AGROH133_05486" /EC_number="6.1.1.7" /note="Alanyl-tRNA synthetase, class IIc; Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain" /codon_start=1 /transl_table=11 /product="alanyl-tRNA synthetase" /protein_id="YP_004278443.1" /db_xref="GI:325292579" /db_xref="GeneID:10266900" /translation="MPVNALFRDDFYLSTAEAIVTAVHEDGGIELDQTCFYATSGGQP GDSGFLERADGSRIELGTTKNGSDKSVIIHVPLEGQPSPEVGEKLTLHVDWPRRYKLM RMHTACHLLSVVCQWPITGAAVGEDESRVDFDMSETIDKDEVTAKLMELVKANHPVFL QWITDEELQANPGIVKSKNVRPPIGLGRVSLVCIGENSTIDSQPCGGTHVSETQEVGD IHIAKIEKKGKENRRFRIRFGTPEAAA" misc_feature complement(1149307..>1149594) /gene="alaS" /locus_tag="AGROH133_05486" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:193739" misc_feature complement(1148866..1149591) /gene="alaS" /locus_tag="AGROH133_05486" /note="Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]; Region: COG2872" /db_xref="CDD:32699" misc_feature complement(1148899..1149033) /gene="alaS" /locus_tag="AGROH133_05486" /note="Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; cl08469" /db_xref="CDD:158351" gene complement(1149610..1150647) /gene="cysK" /locus_tag="AGROH133_05487" /db_xref="GeneID:10266901" CDS complement(1149610..1150647) /gene="cysK" /locus_tag="AGROH133_05487" /EC_number="2.5.1.47" /note="CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis" /codon_start=1 /transl_table=11 /product="Cysteine synthase" /protein_id="YP_004278444.1" /db_xref="GI:325292580" /db_xref="GeneID:10266901" /translation="MTIHPSALSAIGNTPLIRLKAASEATGCEILGKAEFLNPGQSVK DRAALYIIRDAERRGQLRPGGTIVEGTAGNTGIGLSLVANALGYKTVIVIPETQSQEK KDALKLLGAKLVEVPAAPYSNPNNYVKVSGRLAKQLAATDENGAIWANQFDNIANRQA HIETTAPEIWDQTDGKVDGFICSVGSGGTLAGVADGLRDFNPDIKIGLADPEGAALYE FYKHGVLKSEGSSITEGIGQGRITANLEGFAPDFSYRISDAEALPVLFDLVTKEGLCL GGSSGINIAGAIRLARELGPGHTIVTILCDYGNRYQSKLFNPDFLRSKGLPVPQWLAA KSEIAVPYETV" misc_feature complement(1149706..1150641) /gene="cysK" /locus_tag="AGROH133_05487" /note="Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031" /db_xref="CDD:30381" misc_feature complement(1149709..1150614) /gene="cysK" /locus_tag="AGROH133_05487" /note="CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine...; Region: CBS_like; cd01561" /db_xref="CDD:107204" misc_feature complement(order(1149712..1149714,1149721..1149723, 1149751..1149753,1149823..1149831,1149835..1149843, 1150132..1150137,1150321..1150326,1150333..1150338, 1150345..1150350,1150396..1150398,1150405..1150407, 1150531..1150533,1150537..1150539,1150555..1150557, 1150594..1150602)) /gene="cysK" /locus_tag="AGROH133_05487" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:107204" misc_feature complement(order(1149730..1149735,1149811..1149813, 1149943..1149945,1150081..1150098,1150426..1150428, 1150516..1150518)) /gene="cysK" /locus_tag="AGROH133_05487" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107204" misc_feature complement(1150516..1150518) /gene="cysK" /locus_tag="AGROH133_05487" /note="catalytic residue [active]" /db_xref="CDD:107204" gene 1150687..1150797 /locus_tag="AGROH133_05488" /db_xref="GeneID:10266902" CDS 1150687..1150797 /locus_tag="AGROH133_05488" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278445.1" /db_xref="GI:325292581" /db_xref="GeneID:10266902" /translation="MSRYNRLKARNYLPALGFATQNFADTQFYALFFTSA" gene complement(1150770..1152209) /locus_tag="AGROH133_05489" /db_xref="GeneID:10266903" CDS complement(1150770..1152209) /locus_tag="AGROH133_05489" /EC_number="4.1.99.3" /note="DNA photolyase, FAD-binding, FAD binding domain of DNA photolyase; Deoxyribodipyrimidine photolyase" /codon_start=1 /transl_table=11 /product="DNA photolyase" /protein_id="YP_004278446.1" /db_xref="GI:325292582" /db_xref="GeneID:10266903" /translation="MPTKSSPVIVWFRKDLRLADNLALLAAVEHGGPVIPIYIRETSS GPLGGAQEWWLHHSLASLSAALEKCGSRLLLRSGNAEETLRRLIAETGADAVLWNRRY EPTGMATDKAIKEALGDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPFWRALEGSE EPHTPADAPQSLKAPETWSKSEKLDDWKLLPVKPDWAKDFSEIWTPGENAAREKLDDF IDGALKGYEEGRDFPAKDATSLLAPHLALGEISPAAVWHATKGLSRHIASNDISRFRK ELVWREFCYHLLFHFPELDEKNWNDSFGAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQ LWKHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGA DASPFFRIFNPILQGEKFDAEGDYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIEL GKTYPLPIVDHGKARERALAAYAEVKNNA" misc_feature complement(1150782..1152194) /locus_tag="AGROH133_05489" /note="Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]; Region: PhrB; COG0415" /db_xref="CDD:30764" misc_feature complement(1151700..1152188) /locus_tag="AGROH133_05489" /note="DNA photolyase; Region: DNA_photolyase; pfam00875" /db_xref="CDD:189751" misc_feature complement(1150782..1151594) /locus_tag="AGROH133_05489" /note="FAD binding domain of DNA photolyase; Region: FAD_binding_7; pfam03441" /db_xref="CDD:146197" gene 1152384..1152686 /locus_tag="AGROH133_05490" /db_xref="GeneID:10266904" CDS 1152384..1152686 /locus_tag="AGROH133_05490" /note="Protein of unknown function DUF982" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278447.1" /db_xref="GI:325292583" /db_xref="GeneID:10266904" /translation="MEVQSMLLKDVKWEKPVTISLENGAPRIFNGVYEAFDFLQHEWP QRGDKAHEQALRLCRASLMGDVAGEIARAAFVTASRQAQCLLEAGNKVEDQGKLAS" misc_feature 1152423..1152647 /locus_tag="AGROH133_05490" /note="Protein of unknown function (DUF982); Region: DUF982; pfam06169" /db_xref="CDD:191465" gene 1152806..1153375 /locus_tag="AGROH133_05491" /db_xref="GeneID:10266905" CDS 1152806..1153375 /locus_tag="AGROH133_05491" /EC_number="2.1.1.63" /note="methylated DNA-protein cysteine methyltransferase" /codon_start=1 /transl_table=11 /product="methylated-DNA-protein- cysteinemethyltransferase" /protein_id="YP_004278448.1" /db_xref="GI:325292584" /db_xref="GeneID:10266905" /translation="MNTAMTNHYGYIVFPTALGHCGLAWAERGIARLQLPSADAGETE KLIQKRLPSSSIAVPDTRAREAIAMVTRYFDGEEIDFTPVELDLAGQERFFLDVYEVA RHIGWGRTTTYGGIVKTLGLSMEKARDVGQAMAKNPVPLIIPCHRVLAAGGRLGGFSA PGGTNTKLRMLDLENAGRSRADDAQGSLF" misc_feature 1152836..1153333 /locus_tag="AGROH133_05491" /note="Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]; Region: Ada; COG0350" /db_xref="CDD:30699" misc_feature 1153085..1153330 /locus_tag="AGROH133_05491" /note="The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445" /db_xref="CDD:119438" misc_feature order(1153085..1153090,1153142..1153147,1153169..1153171, 1153181..1153183,1153187..1153192,1153196..1153198, 1153205..1153210,1153214..1153216,1153238..1153240, 1153253..1153255,1153274..1153276) /locus_tag="AGROH133_05491" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:119438" misc_feature order(1153142..1153144,1153238..1153243,1153247..1153249, 1153325..1153327) /locus_tag="AGROH133_05491" /note="active site" /db_xref="CDD:119438" gene 1153489..1153932 /locus_tag="AGROH133_05492" /db_xref="GeneID:10266906" CDS 1153489..1153932 /locus_tag="AGROH133_05492" /note="Conserved hypothetical protein CHP02594" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278449.1" /db_xref="GI:325292585" /db_xref="GeneID:10266906" /translation="MRVSALILSAALAFTVVAPASAGMLNQAEKYTGLHESKNNKSLK NILGANPRSTPWCGLFLHAVASKAGRPSPKSYGFAKSWTSFGYAVPVAAAKPGDVVVI RNGRGYHAGILKSMSGKTAQILGGNQSGRVQVSNFNRKAIVSVRR" misc_feature 1153555..1153929 /locus_tag="AGROH133_05492" /note="NlpC/P60 family; Region: NLPC_P60; cl11438" /db_xref="CDD:196233" gene complement(1154002..1154241) /locus_tag="AGROH133_05494" /db_xref="GeneID:10266907" CDS complement(1154002..1154241) /locus_tag="AGROH133_05494" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278450.1" /db_xref="GI:325292586" /db_xref="GeneID:10266907" /translation="MSDPKQKKNEPLDIKDEDLPRFETDSELKSKESEIYPDESISLR ARRQAARQHEDAFIVATDLEDDDQRDAAPGTREQP" gene 1154411..1154803 /locus_tag="AGROH133_05495" /db_xref="GeneID:10266908" CDS 1154411..1154803 /locus_tag="AGROH133_05495" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278451.1" /db_xref="GI:325292587" /db_xref="GeneID:10266908" /translation="MNHDREAAIREKARAIWEREGRPEGHHERHWMEAEREVSASTET GKTNGKNGAKKPAAAKPLVQKKVTADKASAKNAKSPAVKSLQKEQKAATSRRDDDLTE SLEESFPASDPPALTNASTATKRVAKKT" gene complement(1154895..1154969) /locus_tag="AGROH133_05496" /db_xref="GeneID:10266909" tRNA complement(1154895..1154969) /locus_tag="AGROH133_05496" /product="tRNA-Asn" /db_xref="GeneID:10266909" gene 1155146..1155424 /locus_tag="AGROH133_05497" /db_xref="GeneID:10266910" CDS 1155146..1155424 /locus_tag="AGROH133_05497" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278452.1" /db_xref="GI:325292588" /db_xref="GeneID:10266910" /translation="MKFGMDHRTGRLNLGKWSVAMPRSRVGRIATGSALVVGGTLGFL PILGFWMVPLGLIVLSHDLPAVRRRRRRLAVWWASRRNGRNTRNRGGQ" gene complement(1155428..1156072) /gene="exoD" /locus_tag="AGROH133_05499" /db_xref="GeneID:10266911" CDS complement(1155428..1156072) /gene="exoD" /locus_tag="AGROH133_05499" /note="Exopolysaccharide synthesis, ExoD; Uncharacterized ABC-type transport system, permease components" /codon_start=1 /transl_table=11 /product="exoD protein" /protein_id="YP_004278453.1" /db_xref="GI:325292589" /db_xref="GeneID:10266911" /translation="MSNEFAFTDTSEKLSTTLEKLIGKLQGQTITLRELMEAIGEQGL LLICAIASLPFLIPVSIPGVSTVFGAAIILVSLAITLNRLPWLPARILDRQMETAKLV PALQKGVAIVSRLDRFIRPRLPALTAGIVANRVNGLALMTAGVLLMMPLGFIPFSNTL PGVAILLFSAGMIQRDGVTVLGGYLFLILTAIYFAALAYAAFWAGQGLSSSMGG" misc_feature complement(1155431..1156063) /gene="exoD" /locus_tag="AGROH133_05499" /note="Exopolysaccharide synthesis, ExoD; Region: ExoD; cl01617" /db_xref="CDD:154502" gene complement(1156186..1156314) /locus_tag="AGROH133_05505" /db_xref="GeneID:10266912" CDS complement(1156186..1156314) /locus_tag="AGROH133_05505" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278454.1" /db_xref="GI:325292590" /db_xref="GeneID:10266912" /translation="MWRKEEEVIMDYVSFITSINPVILVILLIVLLAGAYSSWVSH" gene 1156588..1157175 /locus_tag="AGROH133_05507" /db_xref="GeneID:10266913" CDS 1156588..1157175 /locus_tag="AGROH133_05507" /note="Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278455.1" /db_xref="GI:325292591" /db_xref="GeneID:10266913" /translation="MLKNIYAWTMALAARKSAVWWLAIVAFVESSVFVVPADVLFLPM VLAKPKKAMFYALVATVASVLGGIAGWFLGHYAFESIARPILEFYGKLDSFEQLKNSV NYETIILLLVTSGFAHLPPIKVVTILSGAANISLGLFILSAVVTRGARFFILAGLLQR YGEPVRHFIEKRLGGIAAAVAAALIAIYAVYVFVR" misc_feature 1156588..1157076 /locus_tag="AGROH133_05507" /note="SNARE associated Golgi protein; Region: SNARE_assoc; cl00429" /db_xref="CDD:193815" gene 1157326..1157868 /locus_tag="AGROH133_05512" /db_xref="GeneID:10266914" CDS 1157326..1157868 /locus_tag="AGROH133_05512" /EC_number="3.1.3.-" /note="Protein-tyrosine phosphatase, Tyr-specific/dual-specificity type; Protein tyrosine/serine phosphatase" /codon_start=1 /transl_table=11 /product="tyrosine/serine protein phosphatase" /protein_id="YP_004278456.1" /db_xref="GI:325292592" /db_xref="GeneID:10266914" /translation="MLAAGGYLLAIQLLGNFHEVVAGQLYRSNQPSSEQLVRYTRDHG IKTVINLRGENESEDWYKDEIKTSRELGLTHIDFGMSARHELDMTKVNQLVAIMRDAP KPILIHCKSGADRTGLATALYLGRVAYLGEKAAESQLSVRYGHIGIPYLSETYAMDQT WENVEHMSIADDFTIASNEF" misc_feature 1157326..1157865 /locus_tag="AGROH133_05512" /note="Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (; Region: PTPc; cl00053" /db_xref="CDD:193631" gene complement(1157854..1157946) /locus_tag="AGROH133_05513" /db_xref="GeneID:10266915" CDS complement(1157854..1157946) /locus_tag="AGROH133_05513" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278457.1" /db_xref="GI:325292593" /db_xref="GeneID:10266915" /translation="MRDQNGTQNPASEIDQQFCGRYARPFSKLV" gene 1158043..1159275 /gene="fecC" /locus_tag="AGROH133_05514" /db_xref="GeneID:10266916" CDS 1158043..1159275 /gene="fecC" /locus_tag="AGROH133_05514" /note="Periplasmic binding protein; ABC-type Fe3+-hydroxamate transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="iron III ABC transporter, periplasmic iron-binding protein" /protein_id="YP_004278458.1" /db_xref="GI:325292594" /db_xref="GeneID:10266916" /translation="MFVGNHIFCLYISNLCDPTIKLTPLIIFYRATLFQLLDRIMTPK SFMSGLAASLLSILFTAPYVMAEQKTITDVIGREVKVDLPAKRVVLGFYFEDYMAVGG EKAYDSVVGISREAWEGWVPANWKMHLAHRASLADIADVGEVEAQTFSVEKVLSLNPD LVILAEWQYKGLGLDADRLEEEGIPVVVVDYNAQTVERHVASTRLFGDLTGQEKRGKE IADFYASSLKEVADRVAKSGKPKPKVYVEFGNKGPAEYSFTYGKNMWGAMSTAAGGDN IAAPFVEWWGPINPEQVLASKPDAIFISGRENNKNPAALPMGQAVKAADAGEKLKAFE ARQGWSELPAIKNGQLFGVYQGASRTLSDFAMVQYIAKQLYPEQFKDVDPIANYLGYY KKYLPVTPQGTFAIAVKD" misc_feature 1158196..1159185 /gene="fecC" /locus_tag="AGROH133_05514" /note="ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: FepB; COG0614" /db_xref="CDD:30959" misc_feature 1158247..1159254 /gene="fecC" /locus_tag="AGROH133_05514" /note="Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface...; Region: TroA-like; cl00262" /db_xref="CDD:193735" misc_feature order(1158571..1158576,1158583..1158585,1158664..1158666) /gene="fecC" /locus_tag="AGROH133_05514" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:29734" gene 1159396..1160448 /gene="fecD" /locus_tag="AGROH133_05515" /db_xref="GeneID:10266917" CDS 1159396..1160448 /gene="fecD" /locus_tag="AGROH133_05515" /note="Bacterial transport system permease protein; ABC-type Fe3+-siderophore transport system, permease component" /codon_start=1 /transl_table=11 /product="Fe III dicitrate ABC transporter, permease" /protein_id="YP_004278459.1" /db_xref="GI:325292595" /db_xref="GeneID:10266917" /translation="MTIAARNAEAIGAHRLRERRRWRVVSIFFVLMAVSLVLDIATGP SLLSPAEVVKSLTGLGERAAMTDSIVRGLRLPMALMALSVGAALGAGGAQMQTLLNNP MASPYTLGMAAAAGFGAALVLALGGLGLDAMIAVPLGAFVFSMLAALFLFTLASMRQM TTETIILGGIALLFLFQSLLSLIQFLSSPELSQQILFWLFGSLTKATWPTLGLTAAVT ALCCALLMADCWKLTALRMGEMRAASLGINVRWLRMKVLVIVAIMTATATSFVGVIGF IGLVAPHIARMTVGEDQRFFLPMSALSGALMLSAASILSKSIVPGALFPVGIVTAIVG VPFLMWLIFAPKRRGR" misc_feature 1159465..1160439 /gene="fecD" /locus_tag="AGROH133_05515" /note="ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]; Region: FepG; COG4779" /db_xref="CDD:34391" misc_feature <1159960..1160421 /gene="fecD" /locus_tag="AGROH133_05515" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature order(1160023..1160025,1160197..1160199,1160209..1160211, 1160341..1160343,1160368..1160370) /gene="fecD" /locus_tag="AGROH133_05515" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" misc_feature order(1160071..1160076,1160080..1160088,1160092..1160097, 1160101..1160118,1160122..1160130,1160251..1160253, 1160272..1160274) /gene="fecD" /locus_tag="AGROH133_05515" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" gene 1160445..1161266 /gene="fecE" /locus_tag="AGROH133_05525" /db_xref="GeneID:10266918" CDS 1160445..1161266 /gene="fecE" /locus_tag="AGROH133_05525" /note="Fe(III) dicitrate ABC transporter ATP-binding protein; ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="Fe III dicitrate ABC transporter ATP-binding protein" /protein_id="YP_004278460.1" /db_xref="GI:325292596" /db_xref="GeneID:10266918" /translation="MMVLDSISAERGGQTVVKGLSARLEAGHIHAVIGPNGTGKTTLL RAIFGDLPLAAGSISLGDRRLRAGERAGRYIRQWRDGFAYMPQDTTADIALSVLEVVA LGRFGRLSLHIDDETLNLAMTRLHQAGIAHLAGREIASLSGGQRQMALFAQVLMREPQ AMLLDEPVSALDLKHQVALLDLVRQETRANGWVTLVVLHDLNLACQYADNLLVISDGA LNATGAPGDIVTPKLISETYGVTVEVLRDRRGNPVIQPAGDPLPEHFKTLEGIIA" misc_feature 1160445..1161221 /gene="fecE" /locus_tag="AGROH133_05525" /note="ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120" /db_xref="CDD:31317" misc_feature 1160454..1161113 /gene="fecE" /locus_tag="AGROH133_05525" /note="ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC...; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214" /db_xref="CDD:72973" misc_feature 1160544..1160567 /gene="fecE" /locus_tag="AGROH133_05525" /note="Walker A/P-loop; other site" /db_xref="CDD:72973" misc_feature order(1160553..1160558,1160562..1160570,1160703..1160705, 1160937..1160942,1161039..1161041) /gene="fecE" /locus_tag="AGROH133_05525" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72973" misc_feature 1160694..1160705 /gene="fecE" /locus_tag="AGROH133_05525" /note="Q-loop/lid; other site" /db_xref="CDD:72973" misc_feature 1160865..1160894 /gene="fecE" /locus_tag="AGROH133_05525" /note="ABC transporter signature motif; other site" /db_xref="CDD:72973" misc_feature 1160925..1160942 /gene="fecE" /locus_tag="AGROH133_05525" /note="Walker B; other site" /db_xref="CDD:72973" misc_feature 1160949..1160960 /gene="fecE" /locus_tag="AGROH133_05525" /note="D-loop; other site" /db_xref="CDD:72973" misc_feature 1161027..1161047 /gene="fecE" /locus_tag="AGROH133_05525" /note="H-loop/switch region; other site" /db_xref="CDD:72973" gene 1161263..1161718 /gene="azu" /locus_tag="AGROH133_05526" /db_xref="GeneID:10266919" CDS 1161263..1161718 /gene="azu" /locus_tag="AGROH133_05526" /note="Copper binding proteins, plastocyanin/azurin family; Plastocyanin" /codon_start=1 /transl_table=11 /product="pseudoazurin / blue copper protein" /protein_id="YP_004278461.1" /db_xref="GI:325292597" /db_xref="GeneID:10266919" /translation="MKRFLMMFAAALAVTFSVAPSFAAEHKVLMLNYGTDGSMVFEPS YVKAEPGDTITFVPQNSSHYVQSYSVPEGVTPWKGKLDEAFTVTVEKEGVYLYYCPPH LMMAMIGVIQVGKPVNLEAVRQKAEKLRPKLVMKGERLDAALAQLTPVQ" misc_feature 1161350..1161703 /gene="azu" /locus_tag="AGROH133_05526" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" gene 1161836..1162333 /gene="ftnB" /locus_tag="AGROH133_05528" /db_xref="GeneID:10266920" CDS 1161836..1162333 /gene="ftnB" /locus_tag="AGROH133_05528" /EC_number="1.16.3.1" /note="Ferritin-like domain; Ferritin-like protein" /codon_start=1 /transl_table=11 /product="ferritin" /protein_id="YP_004278462.1" /db_xref="GI:325292598" /db_xref="GeneID:10266920" /translation="MANKLVETTLNDLLNGELRAHHAYLQAAAWAAERNLDGCYKFLL GHAAEELEHMHRIFSFLNDLGAPVIFTELPAPQVTANDIKGLFAIVAQHESRVTAAIN AAVDLARSEKDHATTSFLQWFVNEQHEEDSLCRTIMGKIELIGDGPNALYLIDREIGE LAEKA" misc_feature 1161851..1162309 /gene="ftnB" /locus_tag="AGROH133_05528" /note="nonheme-containing ferritins; Region: Nonheme_Ferritin; cd01055" /db_xref="CDD:153113" misc_feature 1161863..1162267 /gene="ftnB" /locus_tag="AGROH133_05528" /note="Ferritin-like domain; Region: Ferritin; pfam00210" /db_xref="CDD:189451" misc_feature order(1161884..1161886,1161980..1161985,1161992..1161994, 1162115..1162117,1162211..1162213,1162220..1162225) /gene="ftnB" /locus_tag="AGROH133_05528" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153113" gene complement(1162393..1162596) /locus_tag="AGROH133_05529" /db_xref="GeneID:10266921" CDS complement(1162393..1162596) /locus_tag="AGROH133_05529" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278463.1" /db_xref="GI:325292599" /db_xref="GeneID:10266921" /translation="MPDAEKITPVRPDDIAGYVIQCHDGDAKAAVETLLGEIEHLQEQ LSLAVAIMGKGYTRGWTPDLGSD" gene complement(1162767..1163027) /locus_tag="AGROH133_05530" /db_xref="GeneID:10266922" CDS complement(1162767..1163027) /locus_tag="AGROH133_05530" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278464.1" /db_xref="GI:325292600" /db_xref="GeneID:10266922" /translation="MVKKTKIEHSEFSGEFEDDGITVLVDIYRPAGTQQDWTLEVISE HDDVTTWEEPFTTDKDAWEEFLATCEKDGIRSFLDGEDPSVH" misc_feature complement(<1162782..>1162991) /locus_tag="AGROH133_05530" /note="Enolase [Carbohydrate transport and metabolism]; Region: Eno; COG0148" /db_xref="CDD:30497" gene complement(1163166..1163242) /locus_tag="AGROH133_05531" /db_xref="GeneID:10266923" tRNA complement(1163166..1163242) /locus_tag="AGROH133_05531" /product="tRNA-Pro" /db_xref="GeneID:10266923" gene 1163461..1163997 /locus_tag="AGROH133_05532" /db_xref="GeneID:10266924" CDS 1163461..1163997 /locus_tag="AGROH133_05532" /note="Protein of unknown function (DUF1269); Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278465.1" /db_xref="GI:325292601" /db_xref="GeneID:10266924" /translation="MSELVVVGFDGTEEADRVLLKLAGMKKEYLVDLEDAVVVVRDEN GKVHLKQSVNLTAIGASSGFLSGGLWGGLVGLLFLNPLAGFAIGGAIGAGTGALAGSL TDYGIDDDFIKSLGETIPNGSSALFVLIRKVQPEKVMAELEGLRGRVIKTSLSPEQEA QLQKALSGGTEQAAAPAV" misc_feature 1163461..1163988 /locus_tag="AGROH133_05532" /note="Protein of unknown function (DUF1269); Region: DUF1269; cl01978" /db_xref="CDD:154690" gene complement(1164094..1164774) /locus_tag="AGROH133_05535" /db_xref="GeneID:10266925" CDS complement(1164094..1164774) /locus_tag="AGROH133_05535" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278466.1" /db_xref="GI:325292602" /db_xref="GeneID:10266925" /translation="MTCIGLIMETVSAMVSSVDLSTRINSTKLALKAIKEQEDNSAST SSPRTAILDSYGIDTSPSSTNTRLTQLLAQYAQVSGTDAETDDTSTQAPSGDITQASF MTSLKATLEELSKDPSKATQAKAMLEALAAGTLTVSDPTEGAKIKAWDVEADKTTTSK PATEITTTGWSDFLKDHLKRDGSAYAKTTGGAYVDSISGDNAFFGNVGSRYYYLTWPQ AKTGTLTV" gene complement(1165005..1165154) /locus_tag="AGROH133_05536" /db_xref="GeneID:10266926" CDS complement(1165005..1165154) /locus_tag="AGROH133_05536" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278467.1" /db_xref="GI:325292603" /db_xref="GeneID:10266926" /translation="MTQTNNLYFIIGALLVVLVGLGAYVWHEESKPKGIEMNIGPNGV SVQEN" gene complement(1165233..1166474) /locus_tag="AGROH133_05538" /db_xref="GeneID:10266927" CDS complement(1165233..1166474) /locus_tag="AGROH133_05538" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278468.1" /db_xref="GI:325292604" /db_xref="GeneID:10266927" /translation="MTHTGYQHAPDFDAPLAAMRLVGAFFIAFGVFLSGFVISEPAPY ELMMVGQVAIWFLLGLRLSRTVVLLLCLLLAFNVGGYLSLTTMANLDEGPLYLAVSTF LALTSVFYAAIIEDKHQRLLLIFRAWLAAALITSLLGIIGYFHAIPGFEVFTLYDRAK GAFQDPNVFGPFLVTPSLYLIYGLLSGKAMHAPWRILGLLILSLAVFLSFSRAAWGLF LFSAVLLVFVMLLKERTAAFRLKILVLFLVAVALMVAAVIIALQFKQVADLFSSRASA VQSYDGGHLGRFARHYLGFLMAMEHPLGIGPMVFDDIFPAAEHNIWLKSLTTHGWFGF VIYLTLICWTIAACFKLLLRQRPWQPFLIISWVTFVGHVMIGNVIDTDHWRHFFLLLG ILWGCMALEKRENLRRSRSAT" gene complement(1166471..1168024) /locus_tag="AGROH133_05551" /db_xref="GeneID:10266928" CDS complement(1166471..1168024) /locus_tag="AGROH133_05551" /EC_number="2.7.8.6" /note="Bacterial sugar transferase; Sugar transferases involved in lipopolysaccharide synthesis" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis glycosyltransferase" /protein_id="YP_004278469.1" /db_xref="GI:325292605" /db_xref="GeneID:10266928" /translation="MTKADKGRLEFDLATLRQQISERDAGEPSASESVVLNPLARQIA NQLRAGNHSPNMVIGQLRLLEFSMLAIIAAIVNGIAARQGLETFLAVFGIGVLGAAVC VFLLQAGDCYQLPTLRAPLKMFARIQGAVCLSFVTVAGILLLFLPEALHSWQTFAIWY ATGAIAIFTGRLILGFAIRHWGRNGVMERRAVIVGGGDAAKDLIRSLEQQTDNDIRIC GIFDDRKSERSPDVVAGYPKLGTFAELVEFARLTKLDMLIIALPLSAEARILQLLRKL WVLPVDIRIAAHANKLRFRPRAYSHVGAVPMLDVFDKPIRDWDSVGKRVFDIVFSIIG IVLLWPVMLGAAIAVKTTSKGPVFFKQKRHGFNNETINVWKFRSMYTELSDPTAKKAV TKNDPRVTPVGRFLRKSSMDELPQLFNVLYGDLSLVGPRPHAVHAQTGDLKYTEVVEH YFARHKVKPGVTGWAQINGWRGEIDHGDKIKFRTEYDLYYIENWSLLLDLKILFLTPI RLLKSENAY" misc_feature complement(1166474..1167751) /locus_tag="AGROH133_05551" /note="Undecaprenyl-phosphate glucose phosphotransferase; Region: WcaJ_sugtrans; TIGR03023" /db_xref="CDD:188269" misc_feature complement(1166474..1167178) /locus_tag="AGROH133_05551" /note="Bacterial sugar transferase; Region: Bac_transf; cl00939" /db_xref="CDD:193981" gene complement(1168246..1169388) /locus_tag="AGROH133_05557" /db_xref="GeneID:10266929" CDS complement(1168246..1169388) /locus_tag="AGROH133_05557" /note="glycosyl transferases group 1; glycosyltransferase" /codon_start=1 /transl_table=11 /product="glycosyl transferase" /protein_id="YP_004278470.1" /db_xref="GI:325292606" /db_xref="GeneID:10266929" /translation="MADDGPPLRIIHCFRSPVGGVFRHVRDLIEEHVKQGHKVGIVCD SSTGGAHEERLFAQIAPMLELGLTRLPIKRSISPGDLWALVKSYNHIKSLRPDILHGH SAKGGALARLIGSLLRVNKYRVARLYSPHGGSLHYDRKSLKGQLFLRIERFQEHFTDA LCFVCNFEQETYETKVGKPRTRTAMIYNGVQESEFETVPTREGAARFLYIGMLRDLKG PDVFIKAFAKMERSIGQPMSGVIVGDGPDRDKYADMIAKAGLSQRISMHAAMPARQAF ALATTVVVPSRAEAMPYIVLEALAAGKTVIASHVGGIAEVLGEDSEALVPAGDADALA KIMVKDAESQDWGKRVMPRPDSFKAKFSTPVMADDMMKLYRHLLSL" misc_feature complement(1168264..1169367) /locus_tag="AGROH133_05557" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" misc_feature complement(1168252..1169361) /locus_tag="AGROH133_05557" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" gene complement(1169406..1169978) /gene="gumB" /locus_tag="AGROH133_05558" /db_xref="GeneID:10266930" CDS complement(1169406..1169978) /gene="gumB" /locus_tag="AGROH133_05558" /note="Polysaccharide biosynthesis/export protein; Periplasmic protein involved in polysaccharide export" /codon_start=1 /transl_table=11 /product="polysaccharide export protein" /protein_id="YP_004278471.1" /db_xref="GI:325292607" /db_xref="GeneID:10266930" /translation="MPLAGSRHVTALTLAVLTALSGCAAYQPAPKAFHEGALQPYHVD SGDRLRINVFEQTGLTNTYTVDQAGYVAFPLVGQVPARGKTLPQLEAAIAAKLRQGYL RDPDVTIEIDRYRPVFIMGEVGRPGQYSYVPGMTAQNAIAIAGGFTPRANQADVDITR KINTEVMTGRIGITAPILAGDTVYVRERFF" misc_feature complement(1169646..1169891) /gene="gumB" /locus_tag="AGROH133_05558" /note="Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563" /db_xref="CDD:145609" misc_feature complement(1169409..1169858) /gene="gumB" /locus_tag="AGROH133_05558" /note="putative polysaccharide export protein, PEP-CTERM sytem-associated; Region: pepcterm_export; TIGR03027" /db_xref="CDD:132072" misc_feature complement(1169502..1169630) /gene="gumB" /locus_tag="AGROH133_05558" /note="SLBB domain; Region: SLBB; pfam10531" /db_xref="CDD:192616" gene 1170188..1170496 /gene="exoP" /locus_tag="AGROH133_05560" /db_xref="GeneID:10266931" CDS 1170188..1170496 /gene="exoP" /locus_tag="AGROH133_05560" /note="Lipopolysaccharide biosynthesis; Uncharacterized protein involved in exopolysaccharide biosynthesis" /codon_start=1 /transl_table=11 /product="Succinoglycan biosynthesis transport protein exoP" /protein_id="YP_004278472.1" /db_xref="GI:325292608" /db_xref="GeneID:10266931" /translation="MNGDRIDDRDVDIDLARLVAAIWQRKGRIAAITLLAGGAAFVVA SMMSPAYKGEARVLIESRAASFGASQQSNAPAEPVLDELTISSQVQILQSVDLIKQVA " misc_feature 1170230..>1170493 /gene="exoP" /locus_tag="AGROH133_05560" /note="exopolysaccharide transport protein family; Region: eps_transp_fam; TIGR01005" /db_xref="CDD:130078" gene 1170500..1172452 /gene="exoP" /locus_tag="AGROH133_05562" /db_xref="GeneID:10266932" CDS 1170500..1172452 /gene="exoP" /locus_tag="AGROH133_05562" /note="exopolysaccharide transport protein family; Uncharacterized protein involved in exopolysaccharide biosynthesis" /codon_start=1 /transl_table=11 /product="succinoglycan biosynthesis transport protein" /protein_id="YP_004278473.1" /db_xref="GI:325292609" /db_xref="GeneID:10266932" /translation="MKLYERQELDPAARPSLVSKLLVAVGVKKDPQQVPPEERILKAF QERLQVYQVESSRVITVEFSSEDPMLAAAVPNAMMKAYIALQSGAKLDTSTEAARWLE PEIASLREKVRDADRKVADYRASSDILSAGQGETLATRQLSDISTELGRIRGERANAE ARAEGVRNALSSGRPLDTFPDVVASPMIQRLKESEAAMRSQISDLSSSLLEGHPRIKA LRSQIDGIQRQIQEETRKVLASLENEANVSRLRERQLVQQLNVLKTESVRAGEQQVGL NDLEREASAQRQLLETYLARYREATSRAGSAESTPADARVISTAVEPREPYFPKTGAI TIVVTLAAFLLSCIVVMLVELFTGRALKPVGKTHVPPLSDPPPPAKARADTDETPDTP EQPLLAREEDALPAVRSVPAAARQSVVEQEAQIPVAAVAAKPVLPAADAMAAKADAAE EEIDNADNFSIDAVASFLATRLAKSVAAVVSPAGDSGSTTTVMLARALSEMGRSVVLV DMTASACPTRLMAPETGLPGVMDLLAGAAAFGETIHGDRLSDAHIVPRGNAQPREAMR AIDRLTMILSALSDAYDTVLVECGAVQISSLEKMLRNLPAEIVVSVPGNDSELLEKTL GELVAHGYEQALPMTGMRKPDRLSAA" misc_feature 1170575..1172299 /gene="exoP" /locus_tag="AGROH133_05562" /note="exopolysaccharide transport protein family; Region: eps_transp_fam; TIGR01005" /db_xref="CDD:130078" gene complement(1172474..1173706) /locus_tag="AGROH133_05564" /db_xref="GeneID:10266933" CDS complement(1172474..1173706) /locus_tag="AGROH133_05564" /note="Protein involved in cellulose biosynthesis (CelD)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278474.1" /db_xref="GI:325292610" /db_xref="GeneID:10266933" /translation="MAAEAPVIVSEGEGPAAVQNERRGADRLAIDLVDDASTIRADWE QLESDPLNSLHQGYGWCSIWAQTQDRPLLIIRGRQSGKTVFLLPLEIVLEGGIRKARF PGGRFNNINTGLFDRSFAEAASHKTAAAIAREARKLLRGQADILALQNIPLIWRGRTN PLSHLASVENQNPAFQIPLLANFESTLRQINAKRRRKKFRIQSRRAEEMGGYSHVIAR SPREKCELLQTFFRQKAARFASQGIPDVFRDQSVKDFFYDLANFPEIGTDSLLEIHAI RLHGQNEGFIAAISGLSRKQDHIICQFGSIDETFAEISPGELLFWLMIERACSENAAI FDFGVGDQPYKRSWCPLFTVQHDIFLPVTLKGRAAASAYVAIARTKSLIKSNPALYAF IQRFRAGRPSMDATPAAD" misc_feature complement(1172504..1173706) /locus_tag="AGROH133_05564" /note="Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]; Region: COG5653" /db_xref="CDD:35212" gene complement(1173805..1174017) /locus_tag="AGROH133_05565" /db_xref="GeneID:10266934" CDS complement(1173805..1174017) /locus_tag="AGROH133_05565" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278475.1" /db_xref="GI:325292611" /db_xref="GeneID:10266934" /translation="MHPRLRSLIGTIVIICLVVIYAVAATAIASATLAQSPWWVHLAY FVLSGLLWILPAMLVIKWMAGSKKQE" misc_feature complement(1173826..1174002) /locus_tag="AGROH133_05565" /note="Protein of unknown function (DUF2842); Region: DUF2842; pfam11003" /db_xref="CDD:192694" gene 1174245..1175363 /gene="cox15" /locus_tag="AGROH133_05569" /db_xref="GeneID:10266935" CDS 1174245..1175363 /gene="cox15" /locus_tag="AGROH133_05569" /note="Cytochrome oxidase assembly protein; Uncharacterized protein required for cytochrome oxidase assembly" /codon_start=1 /transl_table=11 /product="cytochrome C oxidase assembly transmembrane protein" /protein_id="YP_004278476.1" /db_xref="GI:325292612" /db_xref="GeneID:10266935" /translation="MHSSGMTMANGSAEMVVEAALQKQEKDRRLLRIWLRVVLFTLFC LVLVGGATRLTESGLSITEWKPIHGAIPPLSVAEWEEEFQLYKRIPQYQEINRGMSLD EFKTIFWWEWAHRLLARAIGLIFALPLAFFWLTGRIERRLRLPLIGLLGLGGFQGFVG WWMVSSGLVNRTDVSQYRLATHLTIACLIFAGCMWILRGLSHHSADAANETTGRRFAA LLTFLCLFQIYLGALVAGLNAGLSYNTWPLMDGSLVPGDLFLQQPWWINLFENPKTVQ FVHRLGAYTLFAATLWHMVSLARALPGTPHARRAVLFFVLISIQAALGITTLLMHVDI HVALAHQGMALLVLGFAVAHWRGFLGEYPAPVAVEIRD" misc_feature <1174389..1175303 /gene="cox15" /locus_tag="AGROH133_05569" /note="cytochrome c oxidase assembly protein; Provisional; Region: PTZ00127" /db_xref="CDD:185463" misc_feature 1174389..1175300 /gene="cox15" /locus_tag="AGROH133_05569" /note="Cytochrome oxidase assembly protein; Region: COX15-CtaA; pfam02628" /db_xref="CDD:190372" gene complement(1175370..1176215) /gene="strB" /locus_tag="AGROH133_05578" /db_xref="GeneID:10266936" CDS complement(1175370..1176215) /gene="strB" /locus_tag="AGROH133_05578" /EC_number="2.7.1.87" /note="Aminoglycoside/hydroxyurea antibiotic resistance kinase; Streptomycin 6-kinase" /codon_start=1 /transl_table=11 /product="streptomycin resistance protein" /protein_id="YP_004278477.1" /db_xref="GI:325292613" /db_xref="GeneID:10266936" /translation="MSRAIPFFPASWNIEAAKQIADTPAGVVYEVRLGNGSLAIAKVL KHKVLKDSLRGADFIEWRAGVGCVKLLDRSDDILLMEHAGNETLRDVLFRDGDDDATT AIAADVLLHYHQPSTQTPPASLLTLPQYFESLFRKAEHDCSEGFDSPYIEAASLAEEL IGHQSNIRPLHGDLHHENIMRSARGWIIIDPAGLIGDEALDVANMFSNPLDRFDLTRS EARIASMASIFAKTLKRNERVLLQYAFAYGCLSAAWHEEDGNTRERDDELAVATTIKS VLKQF" misc_feature complement(1175373..1176215) /gene="strB" /locus_tag="AGROH133_05578" /note="Aminoglycoside/hydroxyurea antibiotic resistance kinase; Region: APH_6_hur; cl10490" /db_xref="CDD:158881" gene complement(1176226..1177158) /gene="argC" /locus_tag="AGROH133_05579" /db_xref="GeneID:10266937" CDS complement(1176226..1177158) /gene="argC" /locus_tag="AGROH133_05579" /EC_number="1.2.1.38" /note="catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; Acetylglutamate semialdehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="N-acetyl-gamma-glutamyl-phosphate reductase" /protein_id="YP_004278478.1" /db_xref="GI:325292614" /db_xref="GeneID:10266937" /translation="MTAKIFIDGEHGTTGLQIRTRLAGRRDIELLSIPEAERRNAAIR EDMLNNADISILCLPDDASREAVTMVAGNNNVRIIDTSTAYRIHKDWAYGFAEMDKQQ GEKVRSARFVANPGCYPTGAIGLLRPLRAAGILPDGYPVSVNAVSGYTGGGKQMIAQM EDQSRDDAISANNFLYGLTLAHKHVPEMTIHGQLDRAPLFAPSVGRFPQGMIVQVPLF AADLKDGATIETVHAALTAHYAGQDIVSVVPLAESKGLSRIDAEELAGKDTMKLFVFG TPGGEHINLVALLDNLGKGASGAAVQNMELMLSA" misc_feature complement(1176229..1177158) /gene="argC" /locus_tag="AGROH133_05579" /note="N-acetyl-gamma-glutamyl-phosphate reductase; Provisional; Region: PRK11863" /db_xref="CDD:183344" misc_feature complement(1176853..1177149) /gene="argC" /locus_tag="AGROH133_05579" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(1177230..1178183) /gene="speB" /locus_tag="AGROH133_05580" /db_xref="GeneID:10266938" CDS complement(1177230..1178183) /gene="speB" /locus_tag="AGROH133_05580" /EC_number="3.5.3.11" /note="catalyzes the formation of putrescine from agmatine; Arginase/agmatinase/formimionoglutamate hydrolase, arginase family" /codon_start=1 /transl_table=11 /product="agmatinase" /protein_id="YP_004278479.1" /db_xref="GI:325292615" /db_xref="GeneID:10266938" /translation="MPSKTIDHAFTAATLTSAATDPTHAGVLSFMRRKYTKILKGVST AVWGVPFDAATSNRPGARFGPQAIRRASAIFDNDPQYPFARDLFAHMPTIDYGDCLLD YGNHWKTPDTIEKEARKIISKTDYLLTLGGDHFITWPLLKAHVAKHGPLALVHFDAHQ DTWFDDGKRIDHGSFVARAVRDGLIDADRSIQIGIRTHAPEDFGIRILHGYEVEEMRA SDIASLIIKHTAGMPTYLTFDIDCLDPAFAPGTGTPVAGGPTSAKILSVLRGLGQLDI RGSDVVEVAPAYDHADITAIAGATVAMYMLGLRAERLAKAG" misc_feature complement(1177239..1178114) /gene="speB" /locus_tag="AGROH133_05580" /note="Arginase family; Region: Arginase; cl00306" /db_xref="CDD:193759" gene complement(1178315..1178782) /gene="rpsI" /locus_tag="AGROH133_05581" /db_xref="GeneID:10266939" CDS complement(1178315..1178782) /gene="rpsI" /locus_tag="AGROH133_05581" /note="forms a direct contact with the tRNA during translation; Ribosomal protein S9" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S9" /protein_id="YP_004278480.1" /db_xref="GI:325292616" /db_xref="GeneID:10266939" /translation="MADLSSLKDLAPASEASAPVHVRKVDTLGRSYATGKRKNAVARV WVKPGSGKIIINGRDFTTYFARPVLQMILQQPIVAVARTGQFDIIATVAGGGLSGQAG AVRHGLSKALTYFEPGLRAVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR" misc_feature complement(1178318..1178689) /gene="rpsI" /locus_tag="AGROH133_05581" /note="Ribosomal protein S9/S16; Region: Ribosomal_S9; cl00334" /db_xref="CDD:193774" gene complement(1178785..1179249) /gene="rplM" /locus_tag="AGROH133_05582" /db_xref="GeneID:10266940" CDS complement(1178785..1179249) /gene="rplM" /locus_tag="AGROH133_05582" /note="in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; Ribosomal protein L13" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L13" /protein_id="YP_004278481.1" /db_xref="GI:325292617" /db_xref="GeneID:10266940" /translation="MSTFVQKPAEVEKKWVIIDAEGLVVGRLATIIATRLRGKHKATY TPHVDDGDNVIVINAEKIAFTGNKYADKKYYWHTGHPGGIKERTARQIIEGRFPERVV EKAVERMIPRGPLGRRQMKNLRVYAGSNHPHEAQQPVVLDVAVLNKKNVRSA" misc_feature complement(1178863..1179207) /gene="rplM" /locus_tag="AGROH133_05582" /note="Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392" /db_xref="CDD:88313" misc_feature complement(order(1178875..1178880,1178887..1178889, 1178899..1178901,1178905..1178907,1178911..1178919, 1178923..1178931,1178935..1178943,1178959..1178964, 1179049..1179051,1179055..1179057,1179139..1179141, 1179151..1179153,1179160..1179162,1179169..1179174, 1179178..1179180)) /gene="rplM" /locus_tag="AGROH133_05582" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88313" misc_feature complement(1178959..1178961) /gene="rplM" /locus_tag="AGROH133_05582" /note="L3 interface [polypeptide binding]; other site" /db_xref="CDD:88313" gene complement(1179501..1180370) /locus_tag="AGROH133_05583" /db_xref="GeneID:10266941" CDS complement(1179501..1180370) /locus_tag="AGROH133_05583" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278482.1" /db_xref="GI:325292618" /db_xref="GeneID:10266941" /translation="MPRIAHERVSIVTFDILILVLLGAILHAGWNALVKSGSDKSLDA SLIAAGAAACSLPFLPFLPFPAPVAIPFLIASAVLQFAYFRLVAAAYTIGDIGLVYPV MRGVAPLIVAATSSLFLSEILSPLALAGIAIISGGILTLAFEARRGGGKAIIVALINA FVIASYTFVDGVGARLSGNAISYTLWMSLLPPVLLFGFAFYQRGVSAVTQHVRRNWWR GLIGGGGSILSYGLALYAMTKAPVAVVAALRETSILFALVISVVILKERASVWRYLAG GIIAAGVLVMRLG" misc_feature complement(1179513..1180322) /locus_tag="AGROH133_05583" /note="phosphonate utilization associated putative membrane protein; Region: phn_DUF6; TIGR03340" /db_xref="CDD:163219" gene complement(1180372..1180479) /locus_tag="AGROH133_05593" /db_xref="GeneID:10266942" CDS complement(1180372..1180479) /locus_tag="AGROH133_05593" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278483.1" /db_xref="GI:325292619" /db_xref="GeneID:10266942" /translation="MTRVIIRKEATAYDRRICVSHSHHEKWIPVFKPML" gene 1181222..1181656 /locus_tag="AGROH133_05594" /db_xref="GeneID:10266943" CDS 1181222..1181656 /locus_tag="AGROH133_05594" /note="Predicted CoA-binding protein" /codon_start=1 /transl_table=11 /product="CoA-binding domain protein" /protein_id="YP_004278484.1" /db_xref="GI:325292620" /db_xref="GeneID:10266943" /translation="MQHDTYEPDCLRKILTDVRTIALLGASPNPDRPSHGVMRFLLSK GYRVFPVNPGQAGKEILGQKVYARLADIPEPVDMVDVFRAPEYLSAIVEEAILLPQRP SVIWGQLSVRDDNAAAKAEAYGMNVVMDRCPAIEYPRLNIVR" misc_feature 1181228..1181647 /locus_tag="AGROH133_05594" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 1181730..1183013 /gene="cysD" /locus_tag="AGROH133_05595" /db_xref="GeneID:10266944" CDS 1181730..1183013 /gene="cysD" /locus_tag="AGROH133_05595" /EC_number="2.5.1.49" /note="catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine sulfhydrylase" /codon_start=1 /transl_table=11 /product="O-acetylhomoserine thiol-lyase" /protein_id="YP_004278485.1" /db_xref="GI:325292621" /db_xref="GeneID:10266944" /translation="MPSSNPGFSTLAVHAGAQPDPTTGARATPIYQTTAYAFRDADHA AALFGLKEFGNIYTRIMNPTQAVLEERVAALEGGTAALAVASGHAAQLLVFHTLLQHG DNFVAARQLYGGSINQFGHAFKGFDWQVRWADAADPASFERQIDDRTRAIFIESLANP GGTFVDIAAIADVAHRHGLPLIVDNTMASPYLLRPLEHGADIVLHSLTKFLGGHGNSM GGIIVDGGTFDWSATDKYPSLSQPRPEYSGVVLHQTFGNFAFAIACRVLGLRDLGPAI SPFNAFLILTGIETLPLRVQRHSDNALAVAKWLKAQPKVGWVHYAGLEDSDNYAIQQH YSPKGAGSVFTFGIKGGYAAGKALVEGLQLFSHLANIGDTRSLVIHPASTTHAQLTPE QQTAAGAGPDVVRLSIGIEDVKDIIADLEQSLAKL" misc_feature 1181730..1183010 /gene="cysD" /locus_tag="AGROH133_05595" /note="O-acetylhomoserine aminocarboxypropyltransferase; Validated; Region: PRK05994" /db_xref="CDD:180344" misc_feature 1181799..1183004 /gene="cysD" /locus_tag="AGROH133_05595" /note="CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614" /db_xref="CDD:99738" misc_feature order(1181823..1181834,1181838..1181843,1181898..1181900, 1181904..1181906,1181982..1181987,1181991..1181996, 1182063..1182065,1182078..1182080,1182087..1182089, 1182351..1182353,1182375..1182377,1182381..1182383, 1182525..1182527,1182558..1182560,1182564..1182569, 1182807..1182809) /gene="cysD" /locus_tag="AGROH133_05595" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99738" misc_feature order(1181985..1181993,1182063..1182065,1182192..1182194, 1182279..1182281,1182345..1182347,1182351..1182356, 1182381..1182383) /gene="cysD" /locus_tag="AGROH133_05595" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:99738" misc_feature order(1181985..1181993,1182063..1182065,1182279..1182281, 1182288..1182290,1182345..1182347,1182351..1182356) /gene="cysD" /locus_tag="AGROH133_05595" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature 1182354..1182356 /gene="cysD" /locus_tag="AGROH133_05595" /note="catalytic residue [active]" /db_xref="CDD:99738" gene 1183029..1183397 /locus_tag="AGROH133_05596" /db_xref="GeneID:10266945" CDS 1183029..1183397 /locus_tag="AGROH133_05596" /note="Cupin, RmlC-type, Protein of unknown function (DUF861); Predicted enzyme of the cupin superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278486.1" /db_xref="GI:325292622" /db_xref="GeneID:10266945" /translation="MTNFLAFEDTRTATASDVEAEVEHSAPAPERLISGDPKFTTWNL EEAPGGIYAGIWQSTPGKWRVVYDEWEYFNILEGHSILTEDGGSPRDLKPGDRLVLRP GFKGTWEVVETTRKDYVIRL" misc_feature 1183086..1183394 /locus_tag="AGROH133_05596" /note="Cupin domain; Region: Cupin_2; cl09118" /db_xref="CDD:195796" gene complement(1183456..1184709) /locus_tag="AGROH133_05597" /db_xref="GeneID:10266946" CDS complement(1183456..1184709) /locus_tag="AGROH133_05597" /EC_number="1.14.14.1" /note="Cytochrome P450" /codon_start=1 /transl_table=11 /product="cytochrome P450 hydroxylase" /protein_id="YP_004278487.1" /db_xref="GI:325292623" /db_xref="GeneID:10266946" /translation="MDMTATFPFLKIDPATRRVSLDARNPAFYNDPNPVYAALHAQCP TFYWEEQRQWFFTEYDHVSALLRDRRFGRQILHVASREEIGLAEPLEHVKHFDAAEQH SLLELEPPEHTRLRTLINRAFVSRHVDKMKPEIEELANRLIDAFEGNGKTELLSSYAD IIPVTMIARMIGIPEEMGPQLLKWSHAYVGMYMFKRTPEDELLADRAAHEFSDYVRSV IAERRAEPKDDLLSHMIHTEHKGQYLTDDELISTTIVLLNAGHEATVHQIGNSVRIIL ESGIAPDTLFHDETATERTVEETLRICAPVHIFQRWVLEPVEIDGVEFKRGDKVSLIL AAANLDPAKFSDPLEFRPGRNEGANVSFGAGIHFCIGAPLARLELNLALPLLFKRLPG LKIAEPPKVKDVYHFHGLERLDLSW" misc_feature complement(1183459..1184703) /locus_tag="AGROH133_05597" /note="Cytochrome P450; Region: p450; cl12078" /db_xref="CDD:197442" gene complement(1184795..1186042) /locus_tag="AGROH133_05598" /db_xref="GeneID:10266947" CDS complement(1184795..1186042) /locus_tag="AGROH133_05598" /note="diguanylate cyclase (GGDEF) domain; FOG: GGDEF domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004278488.1" /db_xref="GI:325292624" /db_xref="GeneID:10266947" /translation="MLDAKTGMLLWASETLTLALLLGTLWLHRPARRHNIYFAAGFAA TSAGTVMVALRGDIPNFLSIEVGNALALSAFSFWLAGLLSFEQRKTAGWIAIPPLLWV AGMLIGPVRENMVPRILLYHICAATGYFMLAGILLASKARASFSRKVLAATFILQAFC GALVASIVIPVNAAAPNAIPLTAALAFSGILGFTIIVMMSAKIIMEDTETRLHRLAMT DHLTGVLNRRGLLEEFEHIKKRSPGSSRYVALALFDIDHFKKINDKYGHQSGDAVLVH FCNMAQRVIGERGLFVRMGGEEFALVAEVESPSSTVTLAEAIRSNLRLSKISARGENI EVTTSVGISEAMIKDADLSVMMTEADRALYAAKKAGRNRTVIHINSANVVVPSPDRNE NPMDNNANRQVAALNRIAAIANR" misc_feature complement(1184918..1185394) /locus_tag="AGROH133_05598" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(1185152..1185154,1185281..1185283)) /locus_tag="AGROH133_05598" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(1185149..1185160,1185164..1185166, 1185230..1185232,1185242..1185244,1185254..1185259, 1185266..1185268)) /locus_tag="AGROH133_05598" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(1185092..1185094,1185176..1185178)) /locus_tag="AGROH133_05598" /note="I-site; other site" /db_xref="CDD:143635" gene 1186498..1187130 /gene="clpP" /locus_tag="AGROH133_05606" /db_xref="GeneID:10266948" CDS 1186498..1187130 /gene="clpP" /locus_tag="AGROH133_05606" /EC_number="3.4.21.92" /note="hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; Protease subunit of ATP-dependent Clp proteases" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease, proteolytic subunit" /protein_id="YP_004278489.1" /db_xref="GI:325292625" /db_xref="GeneID:10266948" /translation="MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPV EDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIRPAVSTLCVG QAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE VYVKHTGRTLEEVEKTLDRDHFMDADEAKDWGVIDKILTSRQEMEGAAAN" misc_feature 1186576..1187088 /gene="clpP" /locus_tag="AGROH133_05606" /note="Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017" /db_xref="CDD:132928" misc_feature order(1186612..1186614,1186618..1186620,1186645..1186650, 1186657..1186662,1186669..1186671,1186714..1186716, 1186735..1186737,1186747..1186749,1186756..1186758, 1186765..1186770,1186780..1186782,1186804..1186806, 1186870..1186872,1186876..1186878,1186894..1186905, 1186945..1186947,1186954..1186956,1186960..1186962, 1186966..1186968,1187035..1187037,1187041..1187043) /gene="clpP" /locus_tag="AGROH133_05606" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132928" misc_feature order(1186813..1186815,1186888..1186890,1187035..1187037) /gene="clpP" /locus_tag="AGROH133_05606" /note="active site residues [active]" /db_xref="CDD:132928" gene 1187422..1188699 /gene="clpX" /locus_tag="AGROH133_05607" /db_xref="GeneID:10266949" CDS 1187422..1188699 /gene="clpX" /locus_tag="AGROH133_05607" /EC_number="3.4.21.92" /note="binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease Clp, ATPase subunit" /codon_start=1 /transl_table=11 /product="ATP-dependent clp protease ATP-binding subunit ClpX" /protein_id="YP_004278490.1" /db_xref="GI:325292626" /db_xref="GeneID:10266949" /translation="MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECV ELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYVIGQKQAKKILSVAVHNHYKRLA HASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME GTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFGATVK AEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALV KQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLEG VREVVISNDVVSGIARPLYIYADRQEEKANVSA" misc_feature 1187440..1188672 /gene="clpX" /locus_tag="AGROH133_05607" /note="ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342" /db_xref="CDD:180029" misc_feature 1187467..1187583 /gene="clpX" /locus_tag="AGROH133_05607" /note="ClpX C4-type zinc finger; Region: zf-C4_ClpX; pfam06689" /db_xref="CDD:148346" misc_feature 1187662..>1188075 /gene="clpX" /locus_tag="AGROH133_05607" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1187782..1187805 /gene="clpX" /locus_tag="AGROH133_05607" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1187785..1187808,1187977..1187979) /gene="clpX" /locus_tag="AGROH133_05607" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1187965..1187982 /gene="clpX" /locus_tag="AGROH133_05607" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1188415..1188624 /gene="clpX" /locus_tag="AGROH133_05607" /note="C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431" /db_xref="CDD:192583" gene complement(1188880..1189098) /locus_tag="AGROH133_05608" /db_xref="GeneID:10266950" CDS complement(1188880..1189098) /locus_tag="AGROH133_05608" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278491.1" /db_xref="GI:325292627" /db_xref="GeneID:10266950" /translation="MVPFRTLCLTSWGVRHIHFSRLEVEFRNADFKSPEETTPRNGTA VKFKQIQRRLLLPTFPVIPQDQEPGRRR" gene 1189112..1191529 /gene="lon" /locus_tag="AGROH133_05609" /db_xref="GeneID:10266951" CDS 1189112..1191529 /gene="lon" /locus_tag="AGROH133_05609" /EC_number="3.4.21.53" /note="Lon protease (S16) C-terminal proteolytic domain; ATP-dependent Lon protease, bacterial type" /codon_start=1 /transl_table=11 /product="ATP-dependent protease La" /protein_id="YP_004278492.1" /db_xref="GI:325292628" /db_xref="GeneID:10266951" /translation="MTNITSAASGGIYPVLPLRDIVVFPHMIVPLFVGREKSIRALEE VMGSDKQIMLVTQINASDDDPSPEAIHKVGTVANVLQLLKLPDGTVKVLVEGKGRAQI EAYTDREDFYEASATPLQEPAEDPVEIEALSRSVVSEFESYVKLNKKISPEVVGAAGQ IDDYSKLADTVASHLSIKITEKQEMLETVSVKQRLEKALGFMEGEISVLQVEKRIRSR VKRQMEKTQREYYLNEQMKAIQKELGDGEDGRDEMAELEERIAKTKLSKEAKDKAEAE MKKLRQMSPMSAEATVVRNYLDWLLSLPWGKKSKVKVDLNSAEAVLDQDHFGLDKVKE RIVEYLAVQARASKIRGPILCLVGPPGVGKTSLAKSIAKATGREYVRMALGGVRDEAE IRGHRRTYIGSMPGKIVQSMKKAKKSNPLFLLDEIDKMGMDFRGDPSSALLEVLDPEQ NSTFMDHYLEVEYDLSDVMFVTTANTLNIPGPLMDRMEVIRIAGYTEDEKREIAKRHL LPKAIKEHALRPEEFSVSDDALMIVIQQYTREAGVRSFERELMKLARKAVTEIIKGKV KSVEVTAANVPDYLGVPRFRHGEAEREDQVGVVTGLAWTEVGGELLTIEGVMMPGKGR MTVTGNLKEVMKESISAAASYVRSRAVDFGIEPPRFDKSDIHVHVPEGATPKDGPSAG VAMATAIVSIMTGIPVSKDVAMTGEITLRGRVLPIGGLKEKLLAALRGGIKKVLIPEE NAKDLADIPDNVKNEMEIIPVSRMGEVIKHALLRMPEPIEWDGSIETPVIATVDGVDE GGQTIAH" misc_feature 1189148..1191454 /gene="lon" /locus_tag="AGROH133_05609" /note="ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466" /db_xref="CDD:30814" misc_feature 1189151..1189720 /gene="lon" /locus_tag="AGROH133_05609" /note="Found in ATP-dependent protease La (LON); Region: LON; cl01056" /db_xref="CDD:141077" misc_feature 1190108..1190581 /gene="lon" /locus_tag="AGROH133_05609" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1190183..1190206 /gene="lon" /locus_tag="AGROH133_05609" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1190186..1190209,1190384..1190386,1190525..1190527) /gene="lon" /locus_tag="AGROH133_05609" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1190372..1190389 /gene="lon" /locus_tag="AGROH133_05609" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1190567..1190569 /gene="lon" /locus_tag="AGROH133_05609" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1190822..1191433 /gene="lon" /locus_tag="AGROH133_05609" /note="Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362" /db_xref="CDD:191262" gene 1191818..1192093 /gene="hupA" /locus_tag="AGROH133_05610" /db_xref="GeneID:10266952" CDS 1191818..1192093 /gene="hupA" /locus_tag="AGROH133_05610" /note="Histone-like bacterial DNA-binding protein; Bacterial nucleoid DNA-binding protein" /codon_start=1 /transl_table=11 /product="histone-like protein" /protein_id="YP_004278493.1" /db_xref="GI:325292629" /db_xref="GeneID:10266952" /translation="MNKNELVSAVAEKAGLTKADAASAVDAVFETVQNELKSGGDIRL AGFGSFSVSRREASKGRNPSTGAEVDIPARNVPKFSAGKGLKDAVNS" misc_feature 1191821..1192081 /gene="hupA" /locus_tag="AGROH133_05610" /note="Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-...; Region: HU_IHF; cd00591" /db_xref="CDD:29683" misc_feature order(1191821..1191826,1191833..1191835,1191842..1191844, 1191854..1191856,1191896..1191898,1191905..1191910, 1191917..1191922,1191932..1191946,1191953..1191958, 1191971..1191973,1192037..1192042,1192052..1192054, 1192058..1192060,1192079..1192081) /gene="hupA" /locus_tag="AGROH133_05610" /note="IHF dimer interface [polypeptide binding]; other site" /db_xref="CDD:29683" misc_feature order(1191821..1191829,1191893..1191895,1191938..1191940, 1191944..1191946,1191950..1191955,1191962..1191964, 1191974..1191976,1191980..1191985,1191989..1191991, 1191998..1192009,1192037..1192039,1192049..1192051, 1192055..1192057,1192064..1192066) /gene="hupA" /locus_tag="AGROH133_05610" /note="IHF - DNA interface [nucleotide binding]; other site" /db_xref="CDD:29683" gene 1192452..1194650 /locus_tag="AGROH133_05611" /db_xref="GeneID:10266953" CDS 1192452..1194650 /locus_tag="AGROH133_05611" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278494.1" /db_xref="GI:325292630" /db_xref="GeneID:10266953" /translation="MAFRLSQMALTAALLTSAAFPAAAEPVFNRIASFPVVKNLPADR DAKAVTSAEIVTASEDGKTLIYSDSPLGGIGFVDITDAKAPKAGGALLLEGEPTSVAV AGAKVLAGVNTSENRAKPSGKLVTVDIATKKIEASCDLGGQPDSVAISPDKTFAAIAI ENERDEEVNEGALPQMPAGYLVTVGLKNGVADCATLKKIDVTGLAEISPEDPEPEFVS INANGEIALTLQENNHIVIIDGKTGTVKTHFSAGTVDLEGVDTKTDGQIKFTDKQEGR KREPDAVKWLDNDRIVIANEGDWQGGARGFTIFDKTGKLLYEAGATLEHAAASIGHYP EKRSKAKGIEPEGLEAATFDGQKYFFVLAERASLAAVYKDTGGTPELVQLLPSGISPE GAVAIPSRNLLVTANEADLVEDGGARSHVMIYERAEGQIAYPQLASATVDGAPIGWGA LSGLVGDAEKPGILYAVSDSVYGNQPSIYTIDATKKPATITSALRIKRDGIAAQKLDI EGITLDGKGGFWLASEGDSAKLVPHALYNVSAKGEIKAEIALPKELLAGETRFGFEGV TMIGKGDDATLWMAVQREWGTDEKGFVKLVSYNPKSKEWGAVRYPLDKTEAGWVGLSE ITAQGDYVYIVERDNQVGDKAKIKKLYRVAIADLKPGKIGGELPLVAKQEAHDFLPDL KAQTNGYTVDKLEGFTFDKAGTAYVVTDNDGVDGSSGETLFFTVDLKAIN" gene complement(1194859..1194999) /locus_tag="AGROH133_05613" /db_xref="GeneID:10266954" CDS complement(1194859..1194999) /locus_tag="AGROH133_05613" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278495.1" /db_xref="GI:325292631" /db_xref="GeneID:10266954" /translation="MMDETMSVDAFVTLALIALPVYIFFRWVQQDSEKDSTPKSKNSM GR" gene complement(1195311..1195386) /locus_tag="AGROH133_05615" /db_xref="GeneID:10266955" tRNA complement(1195311..1195386) /locus_tag="AGROH133_05615" /product="tRNA-Val" /db_xref="GeneID:10266955" gene 1195833..1195909 /locus_tag="AGROH133_05616" /db_xref="GeneID:10266956" tRNA 1195833..1195909 /locus_tag="AGROH133_05616" /product="tRNA-Asp" /anticodon=(pos:1195867..1195869,aa:Asp) /db_xref="GeneID:10266956" gene 1195951..1196027 /locus_tag="AGROH133_05617" /db_xref="GeneID:10266957" tRNA 1195951..1196027 /locus_tag="AGROH133_05617" /product="tRNA-Asp" /anticodon=(pos:1195985..1195987,aa:Asp) /db_xref="GeneID:10266957" gene 1196463..1196828 /gene="nuoA" /locus_tag="AGROH133_05618" /db_xref="GeneID:10266958" CDS 1196463..1196828 /gene="nuoA" /locus_tag="AGROH133_05618" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; NADH:ubiquinone oxidoreductase subunit 3 (chain A)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I, A subunit" /protein_id="YP_004278496.1" /db_xref="GI:325292632" /db_xref="GeneID:10266958" /translation="MTELLSSYIPIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSA FECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGDMGWFGFWSMMVFL AVLTIGFIYEWKKGALEWA" misc_feature 1196463..1196825 /gene="nuoA" /locus_tag="AGROH133_05618" /note="NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; Region: Oxidored_q4; cl00535" /db_xref="CDD:186065" gene 1196819..1197403 /gene="nuoB" /locus_tag="AGROH133_05623" /db_xref="GeneID:10266959" CDS 1196819..1197403 /gene="nuoB" /locus_tag="AGROH133_05623" /EC_number="1.6.5.3" /note="The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain B" /protein_id="YP_004278497.1" /db_xref="GI:325292633" /db_xref="GeneID:10266959" /translation="MGMSQNNSTLVAPQPKGIIDPATGKPVGSNDAYFTEINDELADK GFLVTSTDELITWARTGSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQS DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVP VDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIER" misc_feature 1196900..1197382 /gene="nuoB" /locus_tag="AGROH133_05623" /note="NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; cl00419" /db_xref="CDD:193811" gene 1197425..1198027 /gene="nuoC" /locus_tag="AGROH133_05624" /db_xref="GeneID:10266960" CDS 1197425..1198027 /gene="nuoC" /locus_tag="AGROH133_05624" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; NADH:ubiquinone oxidoreductase 27 kD subunit" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I, C subunit" /protein_id="YP_004278498.1" /db_xref="GI:325292634" /db_xref="GeneID:10266960" /translation="MSEALNDLAAYVKEARGSLVVSADIAYGELTLNTTTESVIALLT FLRDDVQCGFVNIIDICGVDWPQREKRFDVVYHLLSPRQNLRVRIKLQVAEDEGVPSA TSVYMGADWFEREAWDMYGIPFEGHADLRRILTDYGFEGHPLRKDFPVTGFVEVRYDD VLKRVLYEPVELKQEFRNFDFLSPWEGTDYVLPGDEKAKQ" misc_feature 1197428..1198024 /gene="nuoC" /locus_tag="AGROH133_05624" /note="Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Region: Complex1_30kDa; cl00539" /db_xref="CDD:193860" gene 1198024..1198452 /locus_tag="AGROH133_05625" /db_xref="GeneID:10266961" CDS 1198024..1198452 /locus_tag="AGROH133_05625" /note="Glutathione-dependent formaldehyde-activating enzyme; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278499.1" /db_xref="GI:325292635" /db_xref="GeneID:10266961" /translation="MSEAPATEHGQCLCGAVGFNASIGAREFGVCHCSMCRRWSGGTF LAVECADVAIENEEHFGVYTSSEWGERCFCRNCGSTLMWRSKDGKHFAVSLQAFDNPS SFHFASQIFTDEKPSSYSFAQTTQNMTGPEFIAMITSAEH" misc_feature 1198048..1198422 /locus_tag="AGROH133_05625" /note="Glutathione-dependent formaldehyde-activating enzyme; Region: GFA; cl01553" /db_xref="CDD:186452" gene 1198454..1199644 /gene="nuoD" /locus_tag="AGROH133_05626" /db_xref="GeneID:10266962" CDS 1198454..1199644 /gene="nuoD" /locus_tag="AGROH133_05626" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; NADH:ubiquinone oxidoreductase 49 kD subunit 7" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain D" /protein_id="YP_004278500.1" /db_xref="GI:325292636" /db_xref="GeneID:10266962" /translation="MTEHNVRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGL LHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLGLEIPMRGQLIRVL YSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYVRPGG VHQDLPPELVEDIGKWCDPFITVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFT GVMVRGSGAAWDLRRAQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQC VDLLSGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVE APKGEFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVLGSLDIVFG EVDR" misc_feature 1198460..1199641 /gene="nuoD" /locus_tag="AGROH133_05626" /note="Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Region: Complex1_49kDa; cl00417" /db_xref="CDD:193809" gene 1199644..1199904 /locus_tag="AGROH133_05627" /db_xref="GeneID:10266963" CDS 1199644..1199904 /locus_tag="AGROH133_05627" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278501.1" /db_xref="GI:325292637" /db_xref="GeneID:10266963" /translation="MRLPLAILAFLAAMSTSVLAQTATEEGGVSLSSSGGSTIKQLLS SGYEIKASVPNGSKFIVFMQKDKAAYACEFVTVARSRCETLN" gene 1199921..1201030 /gene="nuoE" /locus_tag="AGROH133_05629" /db_xref="GeneID:10266964" CDS 1199921..1201030 /gene="nuoE" /locus_tag="AGROH133_05629" /EC_number="1.6.5.3" /note="catalyzes the transfer of electrons from NADH to ubiquinone; NADH:ubiquinone oxidoreductase 24 kD subunit" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I, E subunit" /protein_id="YP_004278502.1" /db_xref="GI:325292638" /db_xref="GeneID:10266964" /translation="MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPEGRQQSAVIP LLMRAQEQDGWVTRAAIEKIADMLDMAYIRVMEVATFYTQFQLKPVGTRAHVQVCGTT PCMLRGSEALMDVCRKKIHHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDL TPERLEEIIDTFEAGKGDTVKTGPQIDRHQSVPVGGLTTLTEEIKPDRSNLDKPAEAP AEAAPVLPSNAAKPKTDAPETDPKLKTPANEPKASAENAKAGEQQSAGKEAIASRPSL ESADRPAGIEKPAAPDDLKLISGVGPKIEGTLNELGIFTYAQIAGWKKAECDWVDGYL NFKGRIERDEWIKQAEALAKGGEAEYIRVFGKKPR" misc_feature 1199924..1201027 /gene="nuoE" /locus_tag="AGROH133_05629" /note="NADH dehydrogenase subunit E; Provisional; Region: PRK12373" /db_xref="CDD:183479" misc_feature 1200197..1200430 /gene="nuoE" /locus_tag="AGROH133_05629" /note="TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of...; Region: TRX_Fd_NuoE; cd03064" /db_xref="CDD:48613" misc_feature order(1200203..1200205,1200209..1200211,1200329..1200337) /gene="nuoE" /locus_tag="AGROH133_05629" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48613" misc_feature order(1200215..1200217,1200230..1200232,1200338..1200340, 1200350..1200352) /gene="nuoE" /locus_tag="AGROH133_05629" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:48613" misc_feature 1200608..1200994 /gene="nuoE" /locus_tag="AGROH133_05629" /note="Uncharacterized conserved protein [Function unknown]; Region: COG3743" /db_xref="CDD:33538" gene 1201041..1202345 /gene="nuoF" /locus_tag="AGROH133_05630" /db_xref="GeneID:10266965" CDS 1201041..1202345 /gene="nuoF" /locus_tag="AGROH133_05630" /EC_number="1.6.5.3" /note="part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain F" /protein_id="YP_004278503.1" /db_xref="GI:325292639" /db_xref="GeneID:10266965" /translation="MLKDQDRIFTNLYGLKDKSLKGVRARGHWDGTKQIIEKGRDWII NEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREILRNDP HTLIEGCVIAGFAMGAHTAYIYVRGEYMREREALQAAIDECYDAGLLGKNNKNGWDFD IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAP TILRRGAAWFSSIGRPNNVGTKLFMVSGHVERPCTFEDALGLSFRELIEHHCGGIRGG WDNLLGVIPGGASCPIVRGEDMKDAIMDFDGMREVKSSFGTGGMIVMDKSTDVIKAIA RIAAFFKHESCGQCTPCREGTGWMWRVLERMVKGNAQKREIDMLFEVTKQIEGHTICA LGDAAAWPVQALIRNFRPEIEKRIDQYTYRAMDDGAVLEAAE" misc_feature 1201041..1202342 /gene="nuoF" /locus_tag="AGROH133_05630" /note="NADH dehydrogenase I subunit F; Provisional; Region: PRK13596" /db_xref="CDD:184170" misc_feature 1201179..1201685 /gene="nuoF" /locus_tag="AGROH133_05630" /note="Respiratory-chain NADH dehydrogenase 51 Kd subunit; Region: Complex1_51K; pfam01512" /db_xref="CDD:144926" misc_feature 1201761..1201919 /gene="nuoF" /locus_tag="AGROH133_05630" /note="SLBB domain; Region: SLBB; pfam10531" /db_xref="CDD:192616" misc_feature <1202064..1202165 /gene="nuoF" /locus_tag="AGROH133_05630" /note="NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; pfam10589" /db_xref="CDD:192637" gene 1202397..1204583 /gene="nuoG" /locus_tag="AGROH133_05631" /db_xref="GeneID:10266966" CDS 1202397..1204583 /gene="nuoG" /locus_tag="AGROH133_05631" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I, G subunit" /protein_id="YP_004278504.1" /db_xref="GI:325292640" /db_xref="GeneID:10266966" /translation="MKRLTDEMKCRARLRICCGPCERHGTNRQQDVSRTMAKLKVDGK EIEVPDHFTLLQACEEAGAEVPRFCFHERLSVAGNCRMCLIEVKGGPPKPAASCAMGV RDVRGGPNGELPEVFTNTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAF GIAGSRYAENKRAVEDKYIGPLVKTVMNRCIHCTRCVRFTTEVAGIAELGLIGRGEDA EITTYLEQAMTSELQGNVVDLCPVGALTSKPFAFTARPWELNKTETIDVMDALGSAIR VDTRGREVMRVMPRVNEAINEEWISDKSRFIWDGLKTQRLDRPYVRKDGRLQPASWGE AFGAIKQAVAATSGSKIGAIAGDLASVEEMFALKSLLASLGSANVDCRQDGAALDPSL GRASYLFNSTIEGIEHADALLIVGANPRYEAAVLNARIRKRWRRGGFPIGVIGEAGEL RYNYEYLGSGAETLSDLANGSHSFVEKLKSAKNPLIIIGQGALARADGAAVLAAAAKL AVSVGAISEEWNGFSVLHTAAARVGGLDIGFVPGEGGVAAAEMVTSMDVLFLLGADEI DLSNKGAKFTVYIGSHGDHGAMNADVILPGAAYTEKSGIWVNTEGRVQVGNRAGFAPG EAREDWAILRALSDVLGKKLPFDSLSALRGQLYVAHPHLAETDEIVAGNGADVEALAA RAGSLNKSAFASPVKDFYLTNPIARASAVMAECSALARNNFQAAAE" misc_feature 1202502..1204580 /gene="nuoG" /locus_tag="AGROH133_05631" /note="NADH dehydrogenase subunit G; Validated; Region: PRK09130" /db_xref="CDD:181665" misc_feature 1202520..1202723 /gene="nuoG" /locus_tag="AGROH133_05631" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207" /db_xref="CDD:29262" misc_feature order(1202589..1202594,1202601..1202603,1202628..1202630, 1202634..1202645) /gene="nuoG" /locus_tag="AGROH133_05631" /note="catalytic loop [active]" /db_xref="CDD:29262" misc_feature order(1202601..1202603,1202634..1202636,1202643..1202645) /gene="nuoG" /locus_tag="AGROH133_05631" /note="iron binding site [ion binding]; other site" /db_xref="CDD:29262" misc_feature 1202775..1202897 /gene="nuoG" /locus_tag="AGROH133_05631" /note="NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588" /db_xref="CDD:192636" misc_feature 1203183..1204316 /gene="nuoG" /locus_tag="AGROH133_05631" /note="MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase...; Region: MopB_Res-Cmplx1_Nad11; cd02773" /db_xref="CDD:29469" misc_feature 1204404..1204541 /gene="nuoG" /locus_tag="AGROH133_05631" /note="Domain of unknown function (DUF1982); Region: DUF1982; pfam09326" /db_xref="CDD:192250" gene 1204596..1205642 /gene="nuoH" /locus_tag="AGROH133_05632" /db_xref="GeneID:10266967" CDS 1204596..1205642 /gene="nuoH" /locus_tag="AGROH133_05632" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; NADH:ubiquinone oxidoreductase subunit 1 (chain H)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain H" /protein_id="YP_004278505.1" /db_xref="GI:325292641" /db_xref="GeneID:10266967" /translation="MESFFWSYVWPALIMVGQSLLLLVCLLVAIAFLLLADRKVWAAV QLRRGPNVVGPFGLFQSFADLLKFILKEPVIPAGANKAVFLLAPLVAVTLALATYAVI PFADGWVVANINVGILYIFAISSLEVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVS IGLVIVTVLLCVGSLNLTDIVLAQRTGLGTMIGLPASFLDWHWLSLFPMFIVFFISGL AETNRPPFDLPEAESELVAGHMVEYGSTPYMMFMLGEYAAIVLICCLTTILFLGGWLP IVDVWFLNWIPGIVWFALKGCMVFFMIALVKAFVPRYRYDQLMRLGWKVFLPLSLAMV VIVAFVLKLTGWAG" misc_feature 1204596..1205615 /gene="nuoH" /locus_tag="AGROH133_05632" /note="NADH dehydrogenase; Region: NADHdh; cl00469" /db_xref="CDD:186018" gene 1205679..1206170 /gene="nuoI" /locus_tag="AGROH133_05642" /db_xref="GeneID:10266968" CDS 1205679..1206170 /gene="nuoI" /locus_tag="AGROH133_05642" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain I" /protein_id="YP_004278506.1" /db_xref="GI:325292642" /db_xref="GeneID:10266968" /translation="MASLSQAVNSLFLKEFVGAIFLTMRHFFKQKATVNYPFEKGPVS PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVK CIYCGFCQEACPVDAIVEGPNFEFATETREELYFDKQRLLDNGDRWEREIARNLALDA PYR" misc_feature 1205688..1206167 /gene="nuoI" /locus_tag="AGROH133_05642" /note="NADH dehydrogenase subunit I; Provisional; Region: PRK05888" /db_xref="CDD:180305" misc_feature 1205964..1206032 /gene="nuoI" /locus_tag="AGROH133_05642" /note="4Fe-4S binding domain; Region: Fer4; cl02805" /db_xref="CDD:194449" gene 1206312..1206926 /gene="nuoJ" /locus_tag="AGROH133_05643" /db_xref="GeneID:10266969" CDS 1206312..1206926 /gene="nuoJ" /locus_tag="AGROH133_05643" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; NADH:ubiquinone oxidoreductase subunit 6 (chain J)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain J" /protein_id="YP_004278507.1" /db_xref="GI:325292643" /db_xref="GeneID:10266969" /translation="MGLHAVFFYIFAFVAVASAFMVIASKNPVHSVLFLILTFFNAAA LFLLTGAEFLAMILLVVYVGAVAVLFLFVVMMLDVDFAELRSGVLQYAPIGALIGIIL AAELIVVVGGSVLNPQAAKSITMPIPSPAVRTNTAALGDVLYTNYVYFFQLAGLVLLV AMIGAIVLTLRHRTDIKRQNISTQVGRDPKTAVTTVKVKPGQGI" misc_feature 1206387..1206917 /gene="nuoJ" /locus_tag="AGROH133_05643" /note="NADH:ubiquinone oxidoreductase subunit J; Provisional; Region: PRK06638" /db_xref="CDD:180642" misc_feature <1206711..1206821 /gene="nuoJ" /locus_tag="AGROH133_05643" /note="NADH dehydrogenase subunit J; Provisional; Region: PRK06433; cl14634" /db_xref="CDD:187397" gene 1206956..1207264 /gene="nuoK" /locus_tag="AGROH133_05649" /db_xref="GeneID:10266970" CDS 1206956..1207264 /gene="nuoK" /locus_tag="AGROH133_05649" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain K" /protein_id="YP_004278508.1" /db_xref="GI:325292644" /db_xref="GeneID:10266970" /translation="MEIGLSHYLTVSAILFTIGIFGIFLNRKNVIVILMSIELILLAV NINMVAFSAFLNDIVGQVFALFILTVAAAEAAIGLAILVVFYRNRGSIAVEDVNMMKG " misc_feature 1206962..1207261 /gene="nuoK" /locus_tag="AGROH133_05649" /note="NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; Region: Oxidored_q2; cl00492" /db_xref="CDD:186032" gene 1207272..1209269 /gene="nuoL" /locus_tag="AGROH133_05653" /db_xref="GeneID:10266971" CDS 1207272..1209269 /gene="nuoL" /locus_tag="AGROH133_05653" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to ubiquinone; NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain L" /protein_id="YP_004278509.1" /db_xref="GI:325292645" /db_xref="GeneID:10266971" /translation="MIYKAIVFLPLIGFLIAGLFGRSIGAKASEYVTTGLMIVVAVLS WIVFFSVALAHGEPGEVIKVTVLRWIQSGGIDVEWAFRIDTLTAVMFVVVNTVSTLVH LYSIGYMHHDPHRPRFFAYLSLFTFAMLMLVTSDNLLQMFFGWEGVGLASYLLIGFWF KKPSASAAAMKAFIVNRVGDFGFILGISGVFVLFGSINFETIFAAASTYLPAEGAAST ETVINLFGMQLDKANAMTGVCLLLFMGAMGKSAQFLLHTWLPDAMEGPTPVSALIHAA TMVTAGVFLVARMSPLFELSHDALTVVTLVGAITAFFAATVGLVQNDIKRVIAYSTCS QLGYMFVALGVGAYGAAVFHLFTHAFFKALLFLCAGSVIHAVDGEQDMRYMGGLRKHI PITFWTMTVGTLALTGVGIPGTMIGFAGFFSKDVIIESAYASHSVLSGFAFTLLVIAA LFTSFYSWRLAFMTFFGKPRASADVMHHVHESPMVMLIPLFILTVGAIFAGVVFEGYF FGHEYAEFWKGALFTLPENEILDEFHHVPLWVKWSPFFAMALGFVTAWYMYIKSPETP KRLAATHRGLYQFLLNKWYFDELYDFLFVRSAKALGRFLWKKGDVAVIDHYGPNGIAA RVVDVTNRMVRLQSGYLYHYAFAMLIGIAALVTWMMLGSAF" misc_feature 1207284..1209266 /gene="nuoL" /locus_tag="AGROH133_05653" /note="NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590" /db_xref="CDD:180633" misc_feature 1207461..1207643 /gene="nuoL" /locus_tag="AGROH133_05653" /note="NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662" /db_xref="CDD:109709" misc_feature 1207674..1208564 /gene="nuoL" /locus_tag="AGROH133_05653" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" misc_feature 1208637..1209242 /gene="nuoL" /locus_tag="AGROH133_05653" /note="NADH dehydrogenase subunit 5 C-terminus; Region: NADH5_C; pfam06455" /db_xref="CDD:115131" gene 1209269..1210780 /gene="nuoM" /locus_tag="AGROH133_05671" /db_xref="GeneID:10266972" CDS 1209269..1210780 /gene="nuoM" /locus_tag="AGROH133_05671" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; NADH:ubiquinone oxidoreductase subunit 4 (chain M)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain M" /protein_id="YP_004278510.1" /db_xref="GI:325292646" /db_xref="GeneID:10266972" /translation="MTDWPILSTVTFLPLVGVVLLLLTNENGPYGRRNILNVSLLTTV FTFLVSLFVWIGFDNSNPGFQMVEKHAWFGNIAAYHLGVDGISMLFVILTTFLMPFCV LASWQSVEKRIKEYMIAFLLLEVVMIGVFVALDTVLFYVFFEATLIPMFIIIGVWGGK DRVYASYKFFLYTLLGSVLTMLAIMAMYWQSGTTDMTELLKYGFPAGMQTWLWLACFA AFSVKMPMWPVHTWLPDAHVQAPTAGSVILAGVMLKLGGYGFIRFSLSMFPLASDYFA PFVFTLSVLAIIYTSLVAMMQDDIKKLIAYSSVAHMGYVTMGIFAANVQGVQGAIFQM LSHGIVSGALFLCVGVVYDRLHTREISAYGGLVNNMPKYAVAFMIFTMANVGLPGTSG FVGEFLTLIGVFRANTLVALFAATGVILSAAYALWLYRRVIFGALEKESLKSMLDLST REKVILYPLVALTIFFGVYPAPVFDATAASVDLLVNNYTAALQAAQNVALSMN" misc_feature 1209428..1210765 /gene="nuoM" /locus_tag="AGROH133_05671" /note="NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; Region: NuoM; COG1008" /db_xref="CDD:31212" misc_feature 1209665..1210477 /gene="nuoM" /locus_tag="AGROH133_05671" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" gene 1210799..1212241 /gene="nuoN" /locus_tag="AGROH133_05686" /db_xref="GeneID:10266973" CDS 1210799..1212241 /gene="nuoN" /locus_tag="AGROH133_05686" /EC_number="1.6.5.3" /note="Catalyzes the transfer of electrons from NADH to quinone; NADH:ubiquinone oxidoreductase subunit 2 (chain N)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain N" /protein_id="YP_004278511.1" /db_xref="GI:325292647" /db_xref="GeneID:10266973" /translation="MTAEILLASLHIATPELILAVGALALLMIGVFSGDKSTTTVMGL SVALLLVVGLWIVFAPASGVAFGGVYVADAFGNFMKVLALIGSITAMILSVGQSRFEP VGRFEYPVLLVLATLGILLMISANNLISLYMALELQSLALYVVCAINRESLRSTEAGL KYFVLGALSSGMLLYGMSLVYGFTGNTGFTEIAQVLTAETRSLGLVFGLVFVLAGLAF KISAVPFHMWTPDVYEGAPTPVTAFLSAAPKIGAMAIFVRIVVDAFQPVFADWQQIVV FISIASMLLGSFAAIGQKNIKRLMAYSSIGHMGYALVGLAAGTEAGISGVILYMTIYM VMTLGTFACILSMRRKEIGNVENVEDLGGLSSTNPFMAVVLTILMFSLAGIPPLAGFF GKYYVFLAAIEAKLYPLAVIGVIGSVVGAYYYIRVVKVMWFDEAKGSFERPAGELKIV YALSGLFVVAFIVFGGALGNAVTVAAKTFF" misc_feature 1210808..1212226 /gene="nuoN" /locus_tag="AGROH133_05686" /note="NADH:ubiquinone oxidoreductase subunit N; Provisional; Region: PRK05777" /db_xref="CDD:180252" misc_feature 1211171..1212001 /gene="nuoN" /locus_tag="AGROH133_05686" /note="NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187" /db_xref="CDD:187256" gene 1212268..1213008 /gene="birA" /locus_tag="AGROH133_05700" /db_xref="GeneID:10266974" CDS 1212268..1213008 /gene="birA" /locus_tag="AGROH133_05700" /EC_number="6.3.4.15" /note="Biotin/lipoate A/B protein ligase family; Biotin-(acetyl-CoA carboxylase) ligase" /codon_start=1 /transl_table=11 /product="biotin-acetyl-CoA-carboxylase ligase" /protein_id="YP_004278512.1" /db_xref="GI:325292648" /db_xref="GeneID:10266974" /translation="MSIDDFRHEAMAETPSTNIECFARARAGDGGNLWITAIRQTGGR GRRGRPWVSEPGNLYASLLLIDPAPMDRIGSLPLAFALAVYRAIRAVLPTGGDPLEIK WPNDVLIGRRKTCGILMEAELLPDGRRAIVIGIGINIAHKPENPLYPVTMLSEHGASC SPDELFAHLFRETADVLQSWDEGRGVSGVMAGWRAAACGIGEHITVNFPDRSIGGRFV GIDDNGYLLLDEDEGTRRSIAAGDVFFG" misc_feature 1212298..1213005 /gene="birA" /locus_tag="AGROH133_05700" /note="Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]; Region: BirA; COG0340" /db_xref="CDD:30688" misc_feature 1212304..1212681 /gene="birA" /locus_tag="AGROH133_05700" /note="Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057" /db_xref="CDD:187213" misc_feature 1212862..1213005 /gene="birA" /locus_tag="AGROH133_05700" /note="Biotin protein ligase C terminal domain; Region: BPL_C; pfam02237" /db_xref="CDD:111161" gene 1213216..1214883 /locus_tag="AGROH133_05701" /db_xref="GeneID:10266975" CDS 1213216..1214883 /locus_tag="AGROH133_05701" /EC_number="3.1.-.-" /note="Metallo-beta-lactamase superfamily; Predicted hydrolase of the metallo-beta- lactamase superfamily" /codon_start=1 /transl_table=11 /product="metal dependent hydrolase" /protein_id="YP_004278513.1" /db_xref="GI:325292649" /db_xref="GeneID:10266975" /translation="MTKQDELVFLPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTF AGLDLPGVDLVLPDISYIAEQKKNLKGIIITHAHEDHYGALNDLWPGLNVPVYASGFT AGMLEAKRAYEGSRAEIPITPFKAGDRINVGPFEIEAVGVNHSIPEPMSLVIRTPLGN VIHTGDWKIDEAPSLGPLTDEARFRAIGEEGVLALMCDSTNSLRDGVSPSEHEVSEGL RQIIENAEGRVAITTFSSNVGRIRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIME GIKPFLAEDEYGYIPRNKVVVILTGSQGEPRAALAKLSRDEMRNVALAAGDTVVFSSR AIPGNEKAIIEIKNGLIEQGIHIVTDNEALVHVSGHPRRNELLRMYEWTKPQILVPVH GEAAHLVAQKELAEQAGISQVPKVRNGNILRLAPGPAEVINDAPHGRVFKDGNLIGDL DEMGISNRRKLSFAGHVSVNVLLDSRYDFLGDPDVVPFGLPEFDDEGEDMEDTLYDAV LGAVESIPRARRKDLALLRESVRRAVRAAANQAWGKKPIVTVFVTKV" misc_feature 1213219..1214874 /locus_tag="AGROH133_05701" /note="mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]; Region: COG0595" /db_xref="CDD:30940" misc_feature 1213303..1213866 /locus_tag="AGROH133_05701" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" misc_feature <1214308..1214400 /locus_tag="AGROH133_05701" /note="RNA-metabolising metallo-beta-lactamase; Region: RMMBL; pfam07521" /db_xref="CDD:191768" gene 1215032..1215337 /locus_tag="AGROH133_05703" /db_xref="GeneID:10266976" CDS 1215032..1215337 /locus_tag="AGROH133_05703" /note="Protein of unknown function DUF1467; Predicted secreted protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278514.1" /db_xref="GI:325292650" /db_xref="GeneID:10266976" /translation="MRYKGRITQEDVMPLLSVFAIYFIVWWTVLFVVLPIGLRTQEED GDVAIGTVASAPSRFRGGRIVLWTTLISALICGLWYGVTWWFGVSMDDLPRIIPVFD" misc_feature 1215068..1215334 /locus_tag="AGROH133_05703" /note="Protein of unknown function (DUF1467); Region: DUF1467; cl11569" /db_xref="CDD:159549" gene 1215911..1217344 /gene="proS" /locus_tag="AGROH133_05706" /db_xref="GeneID:10266977" CDS 1215911..1217344 /gene="proS" /locus_tag="AGROH133_05706" /EC_number="6.1.1.15" /note="catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)" /codon_start=1 /transl_table=11 /product="Prolyl-tRNA synthetase" /protein_id="YP_004278515.1" /db_xref="GI:325292651" /db_xref="GeneID:10266977" /translation="MAGFLLGQKQLCTAPISLYSGRFPRLCVLLPIPMEVVMRLSRYF MPILKENPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGKRVLDKVNRIIREEQDRSG AIELLMPTLQTAELWQESGRYDDYGKEMLRIKDRQDRQMLYGPTNEEMITDIFRSYVK SYKNLPLNLYHIQLKFRDEVRPRFGTMRSREFLMKDAYSFDLTKEDAIHSYNKMFVAY LRTFERLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPADDTNF DDVAALQGVFDEWTADYAATSEMHDEAAYDAIPDGQRLSARGIEVGHIFYFGTKYSEP MGAKVQGADGKEHPVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVIINMK AGDAACDAACEKLYYSLSNAGKDVLYDDTDDRAGQKFATADLIGVPMQIIVGPRSAAN GEVEVKDRKTGDRETVTIEAAMNRVLG" misc_feature 1216022..1217341 /gene="proS" /locus_tag="AGROH133_05706" /note="prolyl-tRNA synthetase; Provisional; Region: PRK12325" /db_xref="CDD:183440" misc_feature 1216070..>1216666 /gene="proS" /locus_tag="AGROH133_05706" /note="Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation...; Region: ProRS_core_prok; cd00779" /db_xref="CDD:73229" misc_feature order(1216118..1216123,1216142..1216153,1216172..1216174, 1216223..1216231,1216235..1216240,1216298..1216300, 1216304..1216318,1216370..1216372,1216430..1216432, 1216481..1216483) /gene="proS" /locus_tag="AGROH133_05706" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73229" misc_feature 1216217..1216240 /gene="proS" /locus_tag="AGROH133_05706" /note="motif 1; other site" /db_xref="CDD:73229" misc_feature order(1216346..1216348,1216352..1216354,1216439..1216441, 1216445..1216447,1216469..1216477,1216484..1216486, 1216490..1216492,1216496..1216498) /gene="proS" /locus_tag="AGROH133_05706" /note="active site" /db_xref="CDD:73229" misc_feature 1216436..1216447 /gene="proS" /locus_tag="AGROH133_05706" /note="motif 2; other site" /db_xref="CDD:73229" misc_feature <1216856..1217011 /gene="proS" /locus_tag="AGROH133_05706" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:193739" misc_feature order(1216862..1216867,1216877..1216879,1216967..1216972, 1216976..1216981,1216988..1216990) /gene="proS" /locus_tag="AGROH133_05706" /note="active site" /db_xref="CDD:29813" misc_feature order(1216979..1216981,1216988..1216990) /gene="proS" /locus_tag="AGROH133_05706" /note="motif 3; other site" /db_xref="CDD:29813" misc_feature 1217057..1217338 /gene="proS" /locus_tag="AGROH133_05706" /note="ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-...; Region: ProRS_anticodon_short; cd00861" /db_xref="CDD:29801" misc_feature order(1217081..1217086,1217198..1217200,1217216..1217218, 1217240..1217242,1217270..1217272,1217276..1217278) /gene="proS" /locus_tag="AGROH133_05706" /note="anticodon binding site; other site" /db_xref="CDD:29801" gene 1217467..1218774 /gene="lolE" /locus_tag="AGROH133_05707" /db_xref="GeneID:10266978" CDS 1217467..1218774 /gene="lolE" /locus_tag="AGROH133_05707" /note="Lipoprotein releasing system, transmembrane protein, LolC/E family; ABC-type transport system, involved in lipoprotein release, permease component" /codon_start=1 /transl_table=11 /product="lipoprotein ABC transporter membrane spanning protein" /protein_id="YP_004278516.1" /db_xref="GI:325292652" /db_xref="GeneID:10266978" /translation="MAKAEADKGAAPSARERTARPFSAFERMVAWRYLRSRRKEAFIS VIAGFSFVGIMLGVATLIIVMAVMNGFRTELISRILGINGHMIVQPIDQPFNNYDELA KKFSAIPGVTMALPLVEGQTLASGRGGAGSGALVRGVRQDDIDKIKEVATNVKTGDLV GFMAGDGVLVGSRLAAQLGVTAGDDITLISPEGDVTPMGVNPRVKSYKISGVFEIGMS EYDASMIYMPLSEAQLYFNAEGLVQSIELYVSRPDNVDGIRPLVEQAAERQIYITDWR QRNQTFFSALQVERNVMFMILTLIVLVAALNIISGLIMLVKDKGSDIAILRTMGASSG AVMRIFFMTGAAIGTVGTFAGVALGVIVCLNVESIRQFFSWVSGTVLFDPQLYFLSQL PAEMDISETITVVIMALTLSFLATIFPAWRASKLDPVQALRYE" misc_feature 1217536..1218771 /gene="lolE" /locus_tag="AGROH133_05707" /note="LolC/E family; Region: lolCE; TIGR02212" /db_xref="CDD:162764" misc_feature 1218346..1218750 /gene="lolE" /locus_tag="AGROH133_05707" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 1218790..1219473 /gene="lolD" /locus_tag="AGROH133_05712" /db_xref="GeneID:10266979" CDS 1218790..1219473 /gene="lolD" /locus_tag="AGROH133_05712" /EC_number="3.6.3.-" /note="ABC transporter; ABC-type antimicrobial peptide transport system, ATPase component" /codon_start=1 /transl_table=11 /product="lipoprotein ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004278517.1" /db_xref="GI:325292653" /db_xref="GeneID:10266979" /translation="MAKKSVLRLTGVERTYGQGETSLSILRKADFELKSGEMVALVAP SGTGKSTLLHLAGLLEHPDAGEVFINDAPCNGLPDEKRTAIRRSDIGFVYQFHHLLPE FTAVENVMMPQLIAGLTQGEARKRASALLDYMRVGHRGEHRPAELSGGEQQRVAIARA VANAPLLLLADEPTGNLDPETAHYVFDALEALVRQSGLAALIATHNHELANRMDRRVT LADGKIVDF" misc_feature 1218805..1219467 /gene="lolD" /locus_tag="AGROH133_05712" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature 1218808..1219461 /gene="lolD" /locus_tag="AGROH133_05712" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature 1218916..1218939 /gene="lolD" /locus_tag="AGROH133_05712" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature order(1218925..1218930,1218934..1218942,1219072..1219074, 1219300..1219305,1219402..1219404) /gene="lolD" /locus_tag="AGROH133_05712" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature 1219063..1219074 /gene="lolD" /locus_tag="AGROH133_05712" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature 1219228..1219257 /gene="lolD" /locus_tag="AGROH133_05712" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature 1219288..1219305 /gene="lolD" /locus_tag="AGROH133_05712" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature 1219312..1219323 /gene="lolD" /locus_tag="AGROH133_05712" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature 1219390..1219410 /gene="lolD" /locus_tag="AGROH133_05712" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene 1219956..1223456 /gene="dnaE" /locus_tag="AGROH133_05713" /db_xref="GeneID:10266980" CDS 1219956..1223456 /gene="dnaE" /locus_tag="AGROH133_05713" /EC_number="2.7.7.7" /note="catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III, subunit alpha" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit alpha" /protein_id="YP_004278518.1" /db_xref="GI:325292654" /db_xref="GeneID:10266980" /translation="MGETVTRGETSGETLKTPGFVHLRVHSAYSLLEGALPLKKIMSK AVADGQPAIAITDTNNLFVALEFSEKARDEGLQPIIGCQVSIDMQDAVDDRRNHNSHL AKLPAIVLLAADAGGYERLVDLISRAYLEGESGGQSVHITRAWLEEASNAGLIVLTGA SGGPVDMALKDGHTAQARERLLALKSLFGDKLYIELQRQSGFDRVHERRMIGLAYEHD IPLVATNEAFFPSRADYEAHDALMAVAHNAIVSDDSRFRLTPDHYMKSREEMAELFAD LPEALENTVEIAMRCSYVLKKRGPILPRFTGASDDPEAAQRAEAEELRRQAVEGLDLR LAALGMAPGYAEQEYRDRLDFELGVIERMGFPGYFLIVADFIKWAKQQDIPVGPGRGS GAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQDRREEVIRYVQRKY GREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPANPTPLSKAIEEE PRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVPMYRDPRSDM PVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIPLDDAKTYEM LSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNARKHGEE ELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEEMDQ QRERFVDGAIRNSVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYPV EFLAASMTLDMANTEKLNDFRQDASRLGIEVVAPSVQTSFRQFETGENRIYYSLAAIK GVGEGAVEHIVTVRDGKPFASLEDFCLRIDPKQINRRVLESLINAGGFDCFGRDRAEM IGGLDRIIGYSQRAQESRVTGQSDMFGSGGASGPEKLILPAFQPWLASEKLLREYQVL GFYLTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQERKTRTGNKM GIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVITVQAEERPEGIGLRIQTAQSLE EKSVQMQKALRVYVRDSGPLKTVARHLNTKGDGSVYFIVIKDEGSREIEVELTEKYRI SPEIAAALRSAPGVVDVELV" misc_feature 1220010..1223435 /gene="dnaE" /locus_tag="AGROH133_05713" /note="DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673" /db_xref="CDD:180192" misc_feature 1220019..1220213 /gene="dnaE" /locus_tag="AGROH133_05713" /note="DNA polymerase alpha chain like domain; Region: POLIIIAc; smart00481" /db_xref="CDD:128757" misc_feature 1220979..1222211 /gene="dnaE" /locus_tag="AGROH133_05713" /note="Bacterial DNA polymerase III alpha subunit; Region: DNA_pol3_alpha; pfam07733" /db_xref="CDD:191832" misc_feature 1222986..1223222 /gene="dnaE" /locus_tag="AGROH133_05713" /note="DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli...; Region: DnaE_OBF; cd04485" /db_xref="CDD:72957" misc_feature order(1222986..1222988,1223142..1223144,1223148..1223150, 1223154..1223156,1223208..1223210) /gene="dnaE" /locus_tag="AGROH133_05713" /note="generic binding surface II; other site" /db_xref="CDD:72957" misc_feature order(1223001..1223009,1223049..1223060,1223064..1223066, 1223082..1223090,1223094..1223096,1223139..1223141, 1223160..1223168,1223187..1223195) /gene="dnaE" /locus_tag="AGROH133_05713" /note="generic binding surface I; other site" /db_xref="CDD:72957" gene complement(1223461..1224699) /locus_tag="AGROH133_05714" /db_xref="GeneID:10266981" CDS complement(1223461..1224699) /locus_tag="AGROH133_05714" /note="ErfK/YbiS/YcfS/YnhG; Putative peptidoglycan-binding domain- containing protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278519.1" /db_xref="GI:325292655" /db_xref="GeneID:10266981" /translation="MSLRFRLLTGMLSASILAFPALAADNKSLQIVVSKSDQSLALYE NGEIVATSKVSTGKAGHETPSGIFSILEKRKYHESNIYSAAPMPFMQRLTWSGIALHE GKVPNYPASHGCVRLPSKFAQSLFGETRYGVHVIITDRPVSLRSVQHSALFEPRDDAD DGKLLLSDVELRPATFDAALGTVEVAVNEKTQAIKPMAKGKEPSPLRILITRRGEREK VMDIQAVLTRLGFDAGAPDGYTGEMTISAVNGFKRWKGLKTTGPLLTDDFVATLYASA GEDHPPNGQIMVRQDFKPLFEAAIDIKDPEVALGTHFIEAIAVNRTAGTAEWNGVTLE NHLPAAARKRLGITVTEAPGGFDQLSAVLDRLEIPAEIRSRIEKELSTGSSITVSDLS HQMETGMGTDFITVTKEGPV" misc_feature complement(1224289..1224609) /locus_tag="AGROH133_05714" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" misc_feature complement(<1223794..1224180) /locus_tag="AGROH133_05714" /note="Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]; Region: COG3409" /db_xref="CDD:33215" misc_feature complement(1223917..1224057) /locus_tag="AGROH133_05714" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" misc_feature complement(1223479..>1223847) /locus_tag="AGROH133_05714" /note="hypothetical protein; Provisional; Region: PRK06132" /db_xref="CDD:180417" gene complement(1224865..1226148) /gene="dinP" /locus_tag="AGROH133_05716" /db_xref="GeneID:10266982" CDS complement(1224865..1226148) /gene="dinP" /locus_tag="AGROH133_05716" /EC_number="2.7.7.7" /note="involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; Nucleotidyltransferase/DNA polymerase involved in DNA repair" /codon_start=1 /transl_table=11 /product="DNA polymerase IV" /protein_id="YP_004278520.1" /db_xref="GI:325292656" /db_xref="GeneID:10266982" /translation="MSTSHLYDPGFCRDCLAGQPADLRRCRACGSPRLVYHDELYDLS IAHIDCDAFYASVEKRDNPDLADKPLIIGGGKRGVVSTACYIARIQGVRSAMPMFKAL EACPDAVVIKPDMEKYSRVGRQIRTMMQDLTPLVQPLSIDEAFLDLSGTERLHHDPPA RVLAKFVKRVEKEVGVTVSAGLSYCKFLAKVASDLKKPRGFSVIGEAEALSFLAARPV TTIWGVGKAFAATLEADGIRMIAQLQEMEEGDLMRRYGVMGQRLFRLSRGIDERHVHN NDPVKSVSSETTFFNDISRHEDLVPILRSLSEKVAWRLKKSGISGQTVVLKMKTADFK LRTRNRKLDDPTQLADRIFRTGLSLLAKETDGTKFRLIGIGVSDLRDADLADPPDLVD RQAERRAAAEAAMDKLRDKFGKGSVETGYTFGTRK" misc_feature complement(1224877..1226124) /gene="dinP" /locus_tag="AGROH133_05716" /note="DNA polymerase IV; Provisional; Region: PRK02794" /db_xref="CDD:179473" misc_feature complement(1225018..1226010) /gene="dinP" /locus_tag="AGROH133_05716" /note="DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa; cd03586" /db_xref="CDD:176459" misc_feature complement(order(1225558..1225560,1225723..1225725, 1225885..1225887,1225894..1225896,1225903..1225908, 1225987..1225995,1225999..1226004)) /gene="dinP" /locus_tag="AGROH133_05716" /note="active site" /db_xref="CDD:176459" misc_feature complement(order(1225024..1225026,1225036..1225041, 1225126..1225128,1225132..1225143,1225210..1225212, 1225285..1225308,1225375..1225380,1225465..1225485, 1225579..1225581,1225720..1225725,1225729..1225731, 1225858..1225860,1225927..1225929)) /gene="dinP" /locus_tag="AGROH133_05716" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176459" gene complement(1226218..1226526) /locus_tag="AGROH133_05717" /db_xref="GeneID:10266983" CDS complement(1226218..1226526) /locus_tag="AGROH133_05717" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278521.1" /db_xref="GI:325292657" /db_xref="GeneID:10266983" /translation="MLRDTKNKDNAGKDPQETAAAILGWLANEPEMLGRFLALSGLQA NMLRHAADDPGFLAGLTDFLMSHEPDLMAFCAATDTSPETVAAAWHHFSGPGLDSGEY " misc_feature complement(1226233..1226487) /locus_tag="AGROH133_05717" /note="Protein of unknown function (DUF3572); Region: DUF3572; pfam12096" /db_xref="CDD:152531" gene 1226658..1227029 /gene="divK" /locus_tag="AGROH133_05718" /db_xref="GeneID:10266984" CDS 1226658..1227029 /gene="divK" /locus_tag="AGROH133_05718" /note="CheY-like, Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004278522.1" /db_xref="GI:325292658" /db_xref="GeneID:10266984" /translation="MPKQVMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARK HRPDLILMDIQLPEVSGLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAY VSKPISVPKFIEIIKTYLGDA" misc_feature 1226670..1227008 /gene="divK" /locus_tag="AGROH133_05718" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 1226673..1227017 /gene="divK" /locus_tag="AGROH133_05718" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1226682..1226687,1226814..1226816,1226838..1226840, 1226904..1226906,1226961..1226963,1226970..1226975) /gene="divK" /locus_tag="AGROH133_05718" /note="active site" /db_xref="CDD:29071" misc_feature 1226814..1226816 /gene="divK" /locus_tag="AGROH133_05718" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1226823..1226828,1226832..1226840) /gene="divK" /locus_tag="AGROH133_05718" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1226970..1226978 /gene="divK" /locus_tag="AGROH133_05718" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 1227048..1228418 /gene="pleD" /locus_tag="AGROH133_05719" /db_xref="GeneID:10266985" CDS 1227048..1228418 /gene="pleD" /locus_tag="AGROH133_05719" /EC_number="2.7.7.65" /note="involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Response regulator containing a CheY-like receiver domain and a GGDEF domain" /codon_start=1 /transl_table=11 /product="Response regulator pleD" /protein_id="YP_004278523.1" /db_xref="GI:325292659" /db_xref="GeneID:10266985" /translation="MTARVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALDICNQ EQVDIILLDIMMPGMDGFEVCERLKANPKTAHIPVVMVTALDQPSDRVRGLKAGADDF LTKPVNDLQLIARVKSLVRLKAVSDELRLRAETAREIGIEEMLRSDGLMQTPGRVLVA DGRASSQERIVRALKPVAEVDAVTEPQAALLKAASNPFELVIVNSNFEDYDPLRLCSQ LRSLERTRFLPLLLVAEQGADDMVARALDLGVNDYILRPIDPNELVARSLTQIRRKRY NEHLRLNLQHTMELAIVDGLTGLNNRRYLDNHLKILFDRAAVRGRPISICMTDIDRFK LVNDTYGHDVGDEVLREFAARIRSTVRGADLACRYGGEEFVVVMPDTPMELATSVAER LRAIIEDKPFHVRSIDRELSITASLGIATSSGAFGAPDELLKQADRALYEAKHTGRNR VVAAAA" misc_feature 1227048..1228415 /gene="pleD" /locus_tag="AGROH133_05719" /note="response regulator PleD; Reviewed; Region: pleD; PRK09581" /db_xref="CDD:181966" misc_feature 1227063..1227407 /gene="pleD" /locus_tag="AGROH133_05719" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1227072..1227077,1227204..1227206,1227228..1227230, 1227294..1227296,1227351..1227353,1227360..1227365) /gene="pleD" /locus_tag="AGROH133_05719" /note="active site" /db_xref="CDD:29071" misc_feature 1227204..1227206 /gene="pleD" /locus_tag="AGROH133_05719" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1227213..1227218,1227222..1227230) /gene="pleD" /locus_tag="AGROH133_05719" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1227360..1227368 /gene="pleD" /locus_tag="AGROH133_05719" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1227519..1227845 /gene="pleD" /locus_tag="AGROH133_05719" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1227528..1227533,1227657..1227659,1227681..1227683, 1227747..1227749,1227804..1227806,1227813..1227818) /gene="pleD" /locus_tag="AGROH133_05719" /note="active site" /db_xref="CDD:29071" misc_feature 1227657..1227659 /gene="pleD" /locus_tag="AGROH133_05719" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1227666..1227671,1227675..1227683) /gene="pleD" /locus_tag="AGROH133_05719" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1227813..1227821 /gene="pleD" /locus_tag="AGROH133_05719" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1227927..1228403 /gene="pleD" /locus_tag="AGROH133_05719" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1228032..1228034,1228161..1228163) /gene="pleD" /locus_tag="AGROH133_05719" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1228047..1228049,1228056..1228061,1228071..1228073, 1228083..1228085,1228149..1228151,1228155..1228166) /gene="pleD" /locus_tag="AGROH133_05719" /note="active site" /db_xref="CDD:143635" misc_feature order(1228137..1228139,1228221..1228223) /gene="pleD" /locus_tag="AGROH133_05719" /note="I-site; other site" /db_xref="CDD:143635" gene complement(1229299..1229466) /gene="rpmG" /locus_tag="AGROH133_05720" /db_xref="GeneID:10266986" CDS complement(1229299..1229466) /gene="rpmG" /locus_tag="AGROH133_05720" /note="Ribosomal protein L33" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L33" /protein_id="YP_004278524.1" /db_xref="GI:325292660" /db_xref="GeneID:10266986" /translation="MAKATTIKIKLLSTADTGTFYVTTKNSRTFTDKMTKTKYDPVVR KHVEFKETKIK" misc_feature complement(1229308..1229466) /gene="rpmG" /locus_tag="AGROH133_05720" /note="Ribosomal protein L33; Region: Ribosomal_L33; cl00383" /db_xref="CDD:193795" gene complement(1229556..1230728) /locus_tag="AGROH133_05721" /db_xref="GeneID:10266987" CDS complement(1229556..1230728) /locus_tag="AGROH133_05721" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004278525.1" /db_xref="GI:325292661" /db_xref="GeneID:10266987" /translation="MSQMKCEADAIHWPSLIAAISAISAVGVAIGLGLPLLSIILEKR GISSTMIGVNSAMAGVAAMMAAPVTTKIAHDFGVARTMLFAVVVSALSALCFYFADAF WMWFPLRIVFHGATTTLFILSEYWINMTAPPKKRGMVLGIYATGLAVGFAVGPLLFSV VGSDGILPFLVGAAIILLAAIPIFLARGESPELSERPNHHFARYIWLVPMASAAAFVF GAVQAGGLSLFPIYATREGFNESQAALLLTVMGIGNMVFQIPIGLLSDRMKDRRTMLA LMAFAGVCGTLALPLLVDRWILVAALLLFWGGLVSGMYTVGLTHLGSRLKGADLVAAN AAFIFCYAMGTIAGPQAVGISMDVAGTDGFAWALAVFFGLYVVLYAFRFVFRAKQT" misc_feature complement(1229682..1230596) /locus_tag="AGROH133_05721" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" misc_feature complement(1229580..1230503) /locus_tag="AGROH133_05721" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(1229694..1229696,1229703..1229708, 1229715..1229720,1229727..1229732,1229763..1229765, 1229772..1229777,1229787..1229789,1229796..1229801, 1229808..1229810,1229955..1229957,1229967..1229969, 1229976..1229978,1229988..1229990,1230000..1230002, 1230042..1230044,1230051..1230056,1230063..1230068, 1230075..1230077,1230276..1230278,1230294..1230299, 1230306..1230311,1230345..1230347,1230354..1230359, 1230366..1230371,1230378..1230383)) /locus_tag="AGROH133_05721" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(1230737..1231405) /locus_tag="AGROH133_05734" /db_xref="GeneID:10266988" CDS complement(1230737..1231405) /locus_tag="AGROH133_05734" /note="NUDIX domain; NTP pyrophosphohydrolases including oxidative damage repair enzymes" /codon_start=1 /transl_table=11 /product="nudix hydrolase" /protein_id="YP_004278526.1" /db_xref="GI:325292662" /db_xref="GeneID:10266988" /translation="MSELPSNTQAASGPLRPRDAASIILFDRSGPAIRVLMGRRSNAH IFMPGAYVFPGGKRDPRDHALPFSGDLHPAVLRSLTTSAARRLSAAGARALALAAARE LVEETGVDMGMDADGPDLSRFRYVARAITPPGNIRRYDTRFFCCYADELRLDTRLIRD SDELHNVQWLDMTALSSLNMPKITRTVLEDVTKLMIGDPSLPFESPARLYVTRHGRFI RDFV" misc_feature complement(1230824..1231357) /locus_tag="AGROH133_05734" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or...; Region: Nudix_Hydrolase; cl00447" /db_xref="CDD:189099" gene complement(1231426..1231869) /locus_tag="AGROH133_05735" /db_xref="GeneID:10266989" CDS complement(1231426..1231869) /locus_tag="AGROH133_05735" /note="Protein of unknown function DUF983; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278527.1" /db_xref="GI:325292663" /db_xref="GeneID:10266989" /translation="MSANQGSETVTFGDGSAERPLGRSIMRGMANRCPACGSGRLFRA FLKPVDNCAACGEEMHHHRSDDLPPYISIVIIGHIAVGGFMMTDLVLSVPMWVHFAIW VPITILAALLTLQPIKGGVIGLQWALRMHGFDGKQPKVQIDGSSH" misc_feature complement(1231441..1231869) /locus_tag="AGROH133_05735" /note="Protein of unknown function (DUF983); Region: DUF983; cl02211" /db_xref="CDD:186519" gene complement(1231916..1234270) /gene="rnr" /locus_tag="AGROH133_05738" /db_xref="GeneID:10266990" CDS complement(1231916..1234270) /gene="rnr" /locus_tag="AGROH133_05738" /EC_number="3.1.-.-" /note="Exoribonuclease R" /codon_start=1 /transl_table=11 /product="exoribonuclease" /protein_id="YP_004278528.1" /db_xref="GI:325292664" /db_xref="GeneID:10266990" /translation="MSKAPRQRQGSASDGFGRTGRGKRTNEGEGIIHGEVPSREVLLK FIAEHPQQASKREIAKAFGLKGDDRVVLKALLKELETDGMVQKSRKTLTRPGGLPPVT VLDITTRDKDGELIGRPAEWPEDQGAAPAVLIRQSSQDRSKKAPAAGLGDRILAKIFP SKDSVGPAYTARVVKLIDRRQNALLGVFKETEGGGGRLMPIDRRGEEMVIDPEGVGDA KDGDLIEVDTSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIHAHGIPHIFPPNVLAE ADAAKPATMSHREDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVIVTVAIADV SWYVRSGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAVRMTFS KEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGRPDDKTGTLLEPILKPLWHAYAVMKR GRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAETLEKK KQRLVYRVHDAPTLTKQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQIMV NEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGLGEGGI TPQEEATLDDIAAEISTFERRAMAAERDTINRLIAHHLSERVGEEFDGRVAGVTKAGL FVALPQFGADGFVPISTLGTDYFLYDEAHQALTGEKTGLGYQLGDTVQVRLAEAVPLA GALRFEMLSPGRKMPVGSRSFHKAGRRTSRPSAKPGTRPPRGRR" misc_feature complement(1232027..1234165) /gene="rnr" /locus_tag="AGROH133_05738" /note="ribonuclease R; Region: RNase_R; TIGR02063" /db_xref="CDD:188196" misc_feature complement(1232432..1233409) /gene="rnr" /locus_tag="AGROH133_05738" /note="RNB domain; Region: RNB; pfam00773" /db_xref="CDD:189712" misc_feature complement(1232027..1232275) /gene="rnr" /locus_tag="AGROH133_05738" /note="S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an...; Region: S1_RNase_R; cd04471" /db_xref="CDD:88436" misc_feature complement(order(1232183..1232185,1232189..1232191, 1232222..1232224,1232246..1232248)) /gene="rnr" /locus_tag="AGROH133_05738" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:88436" gene complement(1234267..1236984) /gene="topA" /locus_tag="AGROH133_05739" /db_xref="GeneID:10266991" CDS complement(1234267..1236984) /gene="topA" /locus_tag="AGROH133_05739" /EC_number="5.99.1.2" /note="catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; Topoisomerase IA" /codon_start=1 /transl_table=11 /product="DNA topoisomerase I" /protein_id="YP_004278529.1" /db_xref="GI:325292665" /db_xref="GeneID:10266991" /translation="MLTDQFQRKNNMNVVVVESPAKAKTINKYLGPGYKVLASFGHVR DLPAKDGSVLPDQDFEMSWEVDSASAKRMKDIADAVKSSDGLFLATDPDREGEAISWH VLDLLKKKRVLGDKPVKRVVFNAITKKAVLDAMANPRDIDVPLVDAYLARRALDYLVG FNLSPVLWRKLPGARSAGRVQSVSLRLVCDREAEIERFVSEEYWNISALLKTPRGDEF EAKLVSADGKKLQGRSIKTGDDANRLKALLEGATYIVDTVEAKPVKRNPGPPFTTSTL QQAASSRMGFSASRTMQVAQKLYEGIDIGGETVGLITYMRTDGVQMAPEAIDAARRAI GEQFGDRYVPEKARFYSTKAKNAQEAHEAIRPTDFNRTPDQVKRYLDADQLRLYDLIW KRGIASQMASAEIERTTVEILADKDGEKAGLRAVGSVIRFDGFIAAYTDQKEDGEQSD DGDDEGRLPQINARENLAKQKINASQHFTEPPPRYSEASLIKKMEELGIGRPSTYAAT LKTLSDREYIIIDKRKLIPHSRGRLVTAFLESFFAKYVEYDFTADLEEKLDRISAGEL DWKQVLRDFWKDFFAQIEDTKELRVTNVLDALNEVLAPLVFPKREDGSDPRICQVCGT GNLSLKLGKYGAFVGCSNYPECNFTRQLTSDGSEAEASVSNEPKALGADPMTGEELTL RSGRFGPYIQRGDGKEAKRSSLPKGWKPEEIDHEKALALINLPRDIGKHPETGKMISA GLGRYGPFLLHDGSYANLESIEDVFSIGLNRAVTVIAEKQSKGPGRGRNGTPAALKEL GDHPDGGPITVRDGRYGAYVNWGKVNATIPKGQDPTSVTLDESLVLIAERIAKTGTGG KPAKAKKPAAKKADGDTAAKPKATKAKAATKSKTAAKPKAAAKPKKAES" misc_feature complement(1234441..1236951) /gene="topA" /locus_tag="AGROH133_05739" /note="DNA topoisomerase I subunit omega; Validated; Region: PRK07561" /db_xref="CDD:181030" misc_feature complement(1236571..1236951) /gene="topA" /locus_tag="AGROH133_05739" /note="TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in...; Region: TOPRIM_TopoIA_TopoI; cd03363" /db_xref="CDD:173783" misc_feature complement(order(1236700..1236702,1236706..1236708, 1236712..1236714,1236919..1236921,1236928..1236933)) /gene="topA" /locus_tag="AGROH133_05739" /note="active site" /db_xref="CDD:173783" misc_feature complement(order(1236670..1236675,1236679..1236684, 1236703..1236705,1236709..1236711,1236910..1236912)) /gene="topA" /locus_tag="AGROH133_05739" /note="interdomain interaction site; other site" /db_xref="CDD:173783" misc_feature complement(order(1236706..1236708,1236712..1236714)) /gene="topA" /locus_tag="AGROH133_05739" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173783" misc_feature complement(1236703..1236705) /gene="topA" /locus_tag="AGROH133_05739" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173783" misc_feature complement(1235236..1236555) /gene="topA" /locus_tag="AGROH133_05739" /note="DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded...; Region: TOP1Ac; cd00186" /db_xref="CDD:73184" misc_feature complement(order(1236400..1236459,1236475..1236555)) /gene="topA" /locus_tag="AGROH133_05739" /note="domain I; other site" /db_xref="CDD:73184" misc_feature complement(order(1235440..1235445,1235455..1235457, 1235461..1235466,1235473..1235478,1236037..1236039, 1236085..1236087,1236097..1236099,1236493..1236495, 1236505..1236507,1236517..1236519,1236526..1236531)) /gene="topA" /locus_tag="AGROH133_05739" /note="DNA binding groove [nucleotide binding]" /db_xref="CDD:73184" misc_feature complement(order(1235368..1235370,1236415..1236417, 1236427..1236429)) /gene="topA" /locus_tag="AGROH133_05739" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73184" misc_feature complement(order(1235545..1235577,1235668..1235718, 1235725..1235730,1235734..1235742,1235749..1235784, 1236187..1236231,1236364..1236387)) /gene="topA" /locus_tag="AGROH133_05739" /note="domain II; other site" /db_xref="CDD:73184" misc_feature complement(order(1235785..1235847,1235881..1235907, 1235971..1236057,1236082..1236162,1236166..1236186)) /gene="topA" /locus_tag="AGROH133_05739" /note="domain III; other site" /db_xref="CDD:73184" misc_feature complement(order(1235410..1235412,1235476..1235478, 1235482..1235484,1235806..1235808,1235818..1235820, 1235827..1235829,1235902..1235904,1236133..1236141, 1236151..1236153)) /gene="topA" /locus_tag="AGROH133_05739" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:73184" misc_feature complement(order(1235902..1235904,1236037..1236039, 1236043..1236045)) /gene="topA" /locus_tag="AGROH133_05739" /note="catalytic site [active]" /db_xref="CDD:73184" misc_feature complement(order(1235236..1235352,1235368..1235412, 1235422..1235544)) /gene="topA" /locus_tag="AGROH133_05739" /note="domain IV; other site" /db_xref="CDD:73184" misc_feature complement(1235029..1235136) /gene="topA" /locus_tag="AGROH133_05739" /note="Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; cl11977" /db_xref="CDD:143760" gene 1237211..1237441 /locus_tag="AGROH133_05740" /db_xref="GeneID:10266992" CDS 1237211..1237441 /locus_tag="AGROH133_05740" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278530.1" /db_xref="GI:325292666" /db_xref="GeneID:10266992" /translation="MVPNATNNNADNEGTRENLAYIRQMLAELRLVANREGADMLCYL IEMAYVEVGDIQSGRRKLSIREERNPPPGMPV" gene complement(1237397..1238536) /gene="smf" /locus_tag="AGROH133_05741" /db_xref="GeneID:10266993" CDS complement(1237397..1238536) /gene="smf" /locus_tag="AGROH133_05741" /note="SMF protein, SMF family; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake" /codon_start=1 /transl_table=11 /product="DNA processing chain A" /protein_id="YP_004278531.1" /db_xref="GI:325292667" /db_xref="GeneID:10266993" /translation="MPHEETTRQGIELSARQRVAWLRLIRSDNIGPVTFRELINHFGS AEKALSALPDLSRRGGSLRSPRIATQAEAEDEIETAERFGARFVGIGEPDYPPALRQL DGAPPLIAMKGSASTATRPCVGIVGSRNASINGAKFAAMLARDCGRAGYTIASGLARG IDAAAHRASLATGTVAMLAGGLDRPYPQENFGLLQDIYEEGGATISEMPFGWEPRARD FPRRNRLISGVSLGVVIVEAAERSGSLITARLAGEAGRLVFAVPGSPLDARCEGTNRL IKEGAMLTTGAVDILDALRPLMEPQLPYDRKVEEPRSDEEMSPPGDDERSIVAAALGH SPVETDDIIRHTGFSSATVHMVLLELDIAGRLNRHAGGRVSLLAD" misc_feature complement(1237406..1238500) /gene="smf" /locus_tag="AGROH133_05741" /note="Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]; Region: Smf; COG0758" /db_xref="CDD:31101" misc_feature complement(1237682..1238302) /gene="smf" /locus_tag="AGROH133_05741" /note="DNA recombination-mediator protein A; Region: DNA_processg_A; cl00695" /db_xref="CDD:153941" gene complement(1238558..1239175) /locus_tag="AGROH133_05742" /db_xref="GeneID:10266994" CDS complement(1238558..1239175) /locus_tag="AGROH133_05742" /note="Protein of unknown function DUF205; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278532.1" /db_xref="GI:325292668" /db_xref="GeneID:10266994" /translation="MSALTDWQTAPALLALAALIGYLFGSIPFGLLLTRMAGLGDVRK IGSGNIGATNVLRTGNKKLAAATLLLDALKGTAAVLVANALWGYEASLVAGFFAFLGH LFPVWLGFKGGKGVATYIGVLLGAAPLMMLAFALIWLATAFITRYSSLSALVAMLVIP VALWIVGPEKTALLVTLLSVISWWKHRENIARLLAGTESRIGQKG" misc_feature complement(1238561..1239118) /locus_tag="AGROH133_05742" /note="Domain of unknown function (DUF205); Region: DUF205; cl00410" /db_xref="CDD:193806" gene complement(1239224..1240516) /gene="pyrC" /locus_tag="AGROH133_05747" /db_xref="GeneID:10266995" CDS complement(1239224..1240516) /gene="pyrC" /locus_tag="AGROH133_05747" /EC_number="3.5.2.3" /note="Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; Dihydroorotase and related cyclic amidohydrolases" /codon_start=1 /transl_table=11 /product="dihydroorotase" /protein_id="YP_004278533.1" /db_xref="GI:325292669" /db_xref="GeneID:10266995" /translation="MSAVTVLKNLRIVDPSRNLDEVGSIVIGADGTILDSGGQAHNQG VPEGATVRDCKGLLAVPGLVDARVFVGEPGGEHRETIESASRAAAAGGVTSIIVMPDT DPVIDDIALVEYVKKAARDKALVNVHPAAALTKGLNGEEMTEIGMLKEAGAVAFTNGR RALSDTLVLRRAMTYARELGAVIALETRDKYIGGGDMNEGLFASWLGLSGIPKEAEII PLERDLRIAGLTQAIYHAAKISVPESAEAIRLARQRGVKATCGISINHLTLNENDIGE YRTFFKLSPPLRAEDDRKAMVEALKDGTIDIIVSSHDPQDVDTKRLPFSDAASGAVGL ETMLAAALRLHHSGEVPLMRLIDALSTRPAKIFGLDAGTLKAGAKADITLIDLDEPWL VARDQLVSKSKNTPFEDARFSGRAVATYVAGKAVHSLA" misc_feature complement(1239230..1240516) /gene="pyrC" /locus_tag="AGROH133_05747" /note="dihydroorotase; Validated; Region: PRK09059" /db_xref="CDD:181631" misc_feature complement(<1240319..1240516) /gene="pyrC" /locus_tag="AGROH133_05747" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature complement(1239260..1240375) /gene="pyrC" /locus_tag="AGROH133_05747" /note="Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C...; Region: DHOase_IIa; cd01317" /db_xref="CDD:30060" misc_feature complement(order(1239584..1239586,1239803..1239805, 1239959..1239961,1240310..1240312,1240316..1240318)) /gene="pyrC" /locus_tag="AGROH133_05747" /note="active site" /db_xref="CDD:30060" gene complement(1240513..1241454) /gene="pyrB" /locus_tag="AGROH133_05748" /db_xref="GeneID:10266996" CDS complement(1240513..1241454) /gene="pyrB" /locus_tag="AGROH133_05748" /EC_number="2.1.3.2" /note="catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L-aspartate in pyrimidine biosynthesis; Aspartate carbamoyltransferase, catalytic chain" /codon_start=1 /transl_table=11 /product="aspartate carbamoyltransferase" /protein_id="YP_004278534.1" /db_xref="GI:325292670" /db_xref="GeneID:10266996" /translation="MVYFPHRHLLGIKGLSHQDITLLLDKADEAVKISRQREKKTSTL RGLTQINLFFEASTRTQSSFELAGKRLGADVMNMSVSNSSVKKGETLIDTAMTLNAMR PDVLIVRHSSAGAAALLAQKVACSVVNAGDGQHEHPTQALLDALTIRRAKGDLSGITV AICGDVLHSRVARSNIILLNQMGARVRVVAPATLLPSGIRDMSVEVFHDMKEGLKNAD VVMMLRLQRERMSGSFVPSVREYFHYYGLDAEKLKAAKEDALVMHPGPMNRGVEISSE VADGPQSVIESQVEMGVAVRMAVMETLLVSQNQGERV" misc_feature complement(1240531..1241445) /gene="pyrB" /locus_tag="AGROH133_05748" /note="aspartate carbamoyltransferase catalytic subunit; Provisional; Region: pyrB; PRK00856" /db_xref="CDD:179144" misc_feature complement(1241005..1241436) /gene="pyrB" /locus_tag="AGROH133_05748" /note="Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729" /db_xref="CDD:190401" misc_feature complement(1240546..1240989) /gene="pyrB" /locus_tag="AGROH133_05748" /note="Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185" /db_xref="CDD:189438" gene 1241584..1243236 /gene="acd" /locus_tag="AGROH133_05749" /db_xref="GeneID:10266997" CDS 1241584..1243236 /gene="acd" /locus_tag="AGROH133_05749" /EC_number="1.3.99.3" /note="Acyl-CoA dehydrogenase/oxidase, middle and N-terminal; Acyl-CoA dehydrogenases" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase" /protein_id="YP_004278535.1" /db_xref="GI:325292671" /db_xref="GeneID:10266997" /translation="MTGMNRTEESLAELNQPSLWSGINAYRSDPLIVDLTSGLSRNLR DEFDQLGRYVTSHEAQELARMANQGVPQLHTHGPRGERLDQVEFHPAWHALMRRSMSS GLHSSVWENAAETRGNEHKARATKFYLTSQLEAGHLCPLTMTSASVAAIMTSSRVQKE WVPKILSRKYDSSQKPALQKTAVTVGMGMTEKQGGTDVRANRSTAERVGEGIYRLSGH KWFLSAPMSDGFVMLAQMGDGMGCFLVPRYLEDGSANGLHFQRLKDKLGNRSNASAEV EFTDAFGYLLGEPGSGVRTILDMVTLTRLDCALASSGMMRASLAEAVHFARGRSVFGK TLVSQPIMTRVLADMALDVAAATALSFRLASAFDAARNNASEAAYARVMTPIVKYWCC KIAPALIYEAMECLGGNGYVEERPIARHYREAPVNAIWEGSGNVMALDVLRVLQRGKD LFDLVFQTLERDLGPAGKKTTDVLRAAIALAERDEGAARLLVEQFALAAAAAELCRLG AGKIADAFLETRLAGGWRHTYGMLDSRFDPNYIIDLLYPPAS" misc_feature 1241659..1242924 /gene="acd" /locus_tag="AGROH133_05749" /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933" /db_xref="CDD:195931" misc_feature 1241815..1242918 /gene="acd" /locus_tag="AGROH133_05749" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature order(1242019..1242021,1242142..1242144,1242148..1242150, 1242244..1242246,1242250..1242252,1242868..1242876, 1242880..1242882,1242886..1242888) /gene="acd" /locus_tag="AGROH133_05749" /note="active site" /db_xref="CDD:173838" gene 1243376..1243987 /locus_tag="AGROH133_05750" /db_xref="GeneID:10266998" CDS 1243376..1243987 /locus_tag="AGROH133_05750" /note="GCN5-related N-acetyltransferase; Acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004278536.1" /db_xref="GI:325292672" /db_xref="GeneID:10266998" /translation="MLTFRSARPEDEEALYAISLATGDAGQDATPLYRDGRMVGHIYS VPYLHLWPDAVFVAEDEEGVCGYIAGALDTALHDERLEREWWPHLRALYPDPVGDQQT WDADQRRAHFIHHPRHTPTWLTDPFPAHIHLNLLPRTQGKGGGTRLLSRWLDMARQNN VYGIHLGASERNQAGIRFWETRGFKRLETHDTPGTVWFGMALE" misc_feature <1243760..1243930 /locus_tag="AGROH133_05750" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene 1244123..1244767 /locus_tag="AGROH133_05751" /db_xref="GeneID:10266999" CDS 1244123..1244767 /locus_tag="AGROH133_05751" /note="Bacterial regulatory proteins, tetR family; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_004278537.1" /db_xref="GI:325292673" /db_xref="GeneID:10266999" /translation="MLATAEVISADKPEKRIKDRAATEKAIFEAARSLLAEEGFQGFG INAVARRAGCDKQLIYRYFGGLEGLIEAIGEDLGSWVKDRIPEDTGGMFLLTYGDLME KLALYFMDALRSDPLVCKIIAWEVSDGSPQVRQLAEARAKSLGKWLERMRGSLAAPKG VDTAAVNAVLFAAIQHLVISAATSGQFAGVPLKSDKDWDKIATAVKRLVRGVYG" misc_feature 1244162..1244752 /locus_tag="AGROH133_05751" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature 1244201..>1244311 /locus_tag="AGROH133_05751" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1245026..1245187 /locus_tag="AGROH133_05753" /db_xref="GeneID:10267000" CDS 1245026..1245187 /locus_tag="AGROH133_05753" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278538.1" /db_xref="GI:325292674" /db_xref="GeneID:10267000" /translation="MSRWTALGVMMTFFAMLPLDIDAPAFNLCLMALVRWAVLAGIPD TIFTREQTA" gene 1245184..1245501 /locus_tag="AGROH133_05754" /db_xref="GeneID:10267001" CDS 1245184..1245501 /locus_tag="AGROH133_05754" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278539.1" /db_xref="GI:325292675" /db_xref="GeneID:10267001" /translation="MKWFLILWAGPVALLGSWYWLSYYDLSFGFFMLTRQTHDLVFQI YGNILGLPPESLPPLVARAIAVDSLIVFAILAFRKRKQIANWWQGRQPVARASAESLS SAP" gene complement(1245453..1245932) /locus_tag="AGROH133_05755" /db_xref="GeneID:10267002" CDS complement(1245453..1245932) /locus_tag="AGROH133_05755" /EC_number="3.1.-.-" /note="Polynucleotidyl transferase, Ribonuclease H fold, Uncharacterised protein family (UPF0081); Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)" /codon_start=1 /transl_table=11 /product="Holliday junction resolvase" /protein_id="YP_004278540.1" /db_xref="GI:325292676" /db_xref="GeneID:10267002" /translation="MAILTIEELAETLQPAQAIAGLDLGTKTIGLAMSDLSRRFATPR PVIKRVKFTRDAEVLLAFAEKEKVSAFIIGLPINMDGSAGPRAQATRAFVRTMGEKTA LPFIFWDERLSTVAAERVLLEMDVSRAKRAERIDSAAASFILQGALDRLSALARATG" misc_feature complement(1245480..1245893) /locus_tag="AGROH133_05755" /note="Uncharacterised protein family (UPF0081); Region: UPF0081; cl00525" /db_xref="CDD:186059" gene 1246335..1247039 /locus_tag="AGROH133_05756" /db_xref="GeneID:10267003" CDS 1246335..1247039 /locus_tag="AGROH133_05756" /note="catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; Predicted Zn-dependent hydrolases of the beta- lactamase fold" /codon_start=1 /transl_table=11 /product="metal-dependent hydrolase" /protein_id="YP_004278541.1" /db_xref="GI:325292677" /db_xref="GeneID:10267003" /translation="MKITWLGHSAFRLENGSAKILIDPFFTGNPGFAGQDAKSAAEGI THILLTHGHGDHVGDTVQLARETGATVLANADLAAWLSTKGVAKVDMGNTGGTVHFDG FSVTFTNALHSSAQITEDGVSHSLGNANGLMLHFEDGPAVYHMGDTDIFSDMKLINEL HQPDIGLVPIGDRFTMGGAVAALACQRFFKFSNVIPCHYGSFPIVDQTPEKFVAGMEG SDARVHTPKPGEILSF" misc_feature 1246335..1247036 /locus_tag="AGROH133_05756" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 1247165..1247452 /gene="gatC" /locus_tag="AGROH133_05757" /db_xref="GeneID:10267004" CDS 1247165..1247452 /gene="gatC" /locus_tag="AGROH133_05757" /EC_number="6.3.5.-" /note="Glu-tRNAGln amidotransferase, C subunit, amidotransferase, C subunit; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit" /codon_start=1 /transl_table=11 /product="Glu-tRNA Gln amidotransferase subunit C" /protein_id="YP_004278542.1" /db_xref="GI:325292678" /db_xref="GeneID:10267004" /translation="MSVDLATVKRVARLARIAVTEDEAQNMLGQLNGILGFVEQLSEV NVDGVEPMTSVTPVDMKKRADVVTDGNKAEDIVANAPATDRDFFMVPKVVE" misc_feature 1247165..1247449 /gene="gatC" /locus_tag="AGROH133_05757" /note="Glu-tRNAGln amidotransferase C subunit; Region: Glu-tRNAGln; cl00495" /db_xref="CDD:186035" gene 1247400..1248989 /gene="gatA" /locus_tag="AGROH133_05758" /db_xref="GeneID:10267005" CDS 1247400..1248989 /gene="gatA" /locus_tag="AGROH133_05758" /EC_number="6.3.5.-" /note="Amidase signature enzyme, glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases" /codon_start=1 /transl_table=11 /product="aspartyl/glutamyl-tRNA amidotransferase subunit A" /protein_id="YP_004278543.1" /db_xref="GI:325292679" /db_xref="GeneID:10267005" /translation="MRLRPTGTSSWFRKWSSNPTAVCRPIFSRFRKPLPTMTDLTSLT IAEAREKLKAKEFSALELTDAYIAAIDAANGALNAYVALTPEKARDMAKASDGRIAAG AAGELEGVPLGVKDLFATRDVHTQACSHVLDGFKPKYESTVTQNLWDQGAVMLGKLNM DEFAMGSSNESSWYGPAINPWRANGSEQKLVPGGSSGGSAAAVAAHLCAGATATDTGG SIRQPAAFTGTVGIKPTYGRCSRYGIVAYASSLDQAGPIARDVRDAAILLKTMASVDA KDTTSVDLPVPDYEKAIGQSLKGLKIGIPREYRVDGMPEEIEKLWAKGVEWLRDAGAE VVDISLPHTKYALPAYYIVAPAEASSNLARYDGVRYGLRVDGKDIADMYEKSRAAGFG KEVQRRIMVGTYVLSAGYYDAYYLKAQKVRTLIKRDFENVFHEGVDAILAPITPSSAF AVGDEELASDPVKMYLQDVFTITVNMAGLPGLSVPAGLDGKGLPLGLQLIGKPFEEET LFKTAHAIEQAAGKFTPAKWW" misc_feature 1247508..1248977 /gene="gatA" /locus_tag="AGROH133_05758" /note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154" /db_xref="CDD:30503" misc_feature 1247553..1248950 /gene="gatA" /locus_tag="AGROH133_05758" /note="GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cl11426" /db_xref="CDD:196230" gene complement(1249049..1249306) /locus_tag="AGROH133_05759" /db_xref="GeneID:10267006" CDS complement(1249049..1249306) /locus_tag="AGROH133_05759" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278544.1" /db_xref="GI:325292680" /db_xref="GeneID:10267006" /translation="MDISRAEQRILHLLAQGGSIELVRDEHHKIEKLALYTRDGWIFS GLDLLTFRKLKQKRAIASSGGKPYRITTRGLELVRGELDNR" misc_feature complement(1249052..1249306) /locus_tag="AGROH133_05759" /note="Uncharacterized protein conserved in bacteria (DUF2084); Region: DUF2084; cl01566" /db_xref="CDD:186453" gene 1249491..1250114 /locus_tag="AGROH133_05760" /db_xref="GeneID:10267007" CDS 1249491..1250114 /locus_tag="AGROH133_05760" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family; Acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004278545.1" /db_xref="GI:325292681" /db_xref="GeneID:10267007" /translation="MRSSPTGITRPGGQGGVETALAESHRRCFTSLGHGGRGLIVIRN AQEQEAEVLAAIGLRAWRQATTALGITTTLYDNAASAFSNFTRSSWRAIRVAEFGGAV AGWAAREHFNEAISDFWIDPDFQRRGIGSLLLADIERQILQRDFETIRLETHAQNEPA VAFFRHHGYSVHWLSVSYAPKLDRDVQSVGLQKQLVEVESGLYGPGF" misc_feature 1249773..1249946 /locus_tag="AGROH133_05760" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature order(1249842..1249850,1249878..1249883) /locus_tag="AGROH133_05760" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(1250096..1250545) /locus_tag="AGROH133_05761" /db_xref="GeneID:10267008" CDS complement(1250096..1250545) /locus_tag="AGROH133_05761" /note="Protein of unknown function DUF1294; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278546.1" /db_xref="GI:325292682" /db_xref="GeneID:10267008" /translation="MGRTNGARAQDILHPVAPGTGFSPEPDTRFLRFSVSIHVMTMIA LCFMTYIAFNLFVFLVYWWDKEAARKGGWRIRESTLLLLAFIGGSMGAVSAQQLLRHK TRKEPFRSILISIVILQVGLVASLAIMPDWPIRLVTGLQTLSQNPGP" misc_feature complement(1250147..1250431) /locus_tag="AGROH133_05761" /note="Protein of unknown function (DUF1294); Region: DUF1294; cl01311" /db_xref="CDD:194098" gene 1250580..1252085 /gene="gatB" /locus_tag="AGROH133_05765" /db_xref="GeneID:10267009" CDS 1250580..1252085 /gene="gatB" /locus_tag="AGROH133_05765" /EC_number="6.3.5.-" /note="allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)" /codon_start=1 /transl_table=11 /product="aspartyl/glutamyl-tRNA amidotransferase subunit B" /protein_id="YP_004278547.1" /db_xref="GI:325292683" /db_xref="GeneID:10267009" /translation="MTLVDVRTPDPKRFIPGATGDWEIVIGLEVHAQVLSNSKLFSGA STTFGNAPNSNVSLVDAAMPGMLPVINEECVKQAVRTGLGLKAKINNRSIFDRKNYFY PDLPQGYQISQFKDPIVGEGIITISLGPDRQGNFEDIEIGIERLHLEQDAGKSMHDQH PTMSFVDLNRSGVALMEIVSKPDMRSSDEAKAYLTKLRSIVRYLGTCDGNMDEGSMRA DVNVSVRRPGEGFGTRCEIKNVNSIRFVGQAIEYEARRQIAILEDGGVIDQETRLFDP GKGETRSMRSKEDAHDYRYFPDPDLLPLEFDDAFVDALKVDLPELPDDKKARFVADLG LSVYDASILVSEKAIADYYESVAAGRDPKAAANWVINDLLGALNKSGKDIETTPVSPD QLGGIIDLIKSETISGKIAKDVFEIVWNEGGNPAEIVETRGMKQVTDTGAIEKAVDEI IAANPDQVEKVKAKPALAGWFVGQVMKATGGKANPQAVQALVKAKLGIEDE" misc_feature 1250631..1252067 /gene="gatB" /locus_tag="AGROH133_05765" /note="aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated; Region: gatB; PRK05477" /db_xref="CDD:180111" misc_feature 1250646..1251464 /gene="gatB" /locus_tag="AGROH133_05765" /note="GatB/GatE catalytic domain; Region: GatB_N; pfam02934" /db_xref="CDD:145865" misc_feature 1251633..1252067 /gene="gatB" /locus_tag="AGROH133_05765" /note="GatB domain; Region: GatB_Yqey; cl11497" /db_xref="CDD:159498" gene 1252245..1252742 /locus_tag="AGROH133_05766" /db_xref="GeneID:10267010" CDS 1252245..1252742 /locus_tag="AGROH133_05766" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family; Acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004278548.1" /db_xref="GI:325292684" /db_xref="GeneID:10267010" /translation="MFFIRTASQRDIEPVRALLATTWHATYDAIYGADKVKELIAAWH SPQAMKDRIEKKGGEFLVADNGRQIGGMAYASMSAKMSKTALLHQLYVAPEFQRQGVG RDLFAELETCFPDAEIMRLEVEPKNTVAIAFYEGVGFTEVDRIERMAGIDGFPGIVME KSLKR" misc_feature 1252422..1252616 /locus_tag="AGROH133_05766" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature <1252503..1252736 /locus_tag="AGROH133_05766" /note="Acetyltransferases [General function prediction only]; Region: RimI; COG0456" /db_xref="CDD:30804" misc_feature order(1252512..1252520,1252548..1252553) /locus_tag="AGROH133_05766" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 1252739..1253212 /locus_tag="AGROH133_05767" /db_xref="GeneID:10267011" CDS 1252739..1253212 /locus_tag="AGROH133_05767" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family; Acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004278549.1" /db_xref="GI:325292685" /db_xref="GeneID:10267011" /translation="MNATLDTLIIRTARQEDVPALAAIYAADEIGGHGDTADESALPD YLAAFRDIEASPTETLYVAELDGEIVGTFQTAILTKLIGRGAKSMVIEAVQTRPDMRG RGIGAVMINYCLDEARARGMKAVQLTSNVARLDAHRFYERLGFEKRHFGFRMKLK" misc_feature 1252739..1253179 /locus_tag="AGROH133_05767" /note="Acetyltransferases [General function prediction only]; Region: RimI; COG0456" /db_xref="CDD:30804" misc_feature 1252916..1253122 /locus_tag="AGROH133_05767" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature order(1253018..1253026,1253054..1253059) /locus_tag="AGROH133_05767" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 1253322..1253720 /locus_tag="AGROH133_05768" /db_xref="GeneID:10267012" CDS 1253322..1253720 /locus_tag="AGROH133_05768" /EC_number="1.6.99.3" /note="Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH:ubiquinone oxidoreductase 17.2 kD subunit" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase" /protein_id="YP_004278550.1" /db_xref="GI:325292686" /db_xref="GeneID:10267012" /translation="MKTLLTQIFTWWNGQTIGTRFHTWRFGKKVGQDELGNTYYEGGT TSWGMPRRWVIYNGYAEASAIPPGWHGWMHYRTDVPPSQETYVPREWQKAHQANLTGT SKAYRPQGSLAVAGERPRVTGDYDAWTPGN" misc_feature 1253325..1253717 /locus_tag="AGROH133_05768" /note="NADH ubiquinone oxidoreductase subunit NDUFA12; Region: NDUFA12; cl01534" /db_xref="CDD:186447" gene 1253866..1254303 /locus_tag="AGROH133_05769" /db_xref="GeneID:10267013" CDS 1253866..1254303 /locus_tag="AGROH133_05769" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278551.1" /db_xref="GI:325292687" /db_xref="GeneID:10267013" /translation="MRIFTRDRSLRALTVSLFAAVSAVILVSPVSAARLENRVAVFSG IDKITGRITSFDVYIDETVQFGALQVTPKVCYSRDQTEAQKIDAFIEVDEITLDRKIK RIFTGWMFADSPGLNAVEHPIYDVWLTGCKQDSEVPAPSTASK" misc_feature 1253887..1254297 /locus_tag="AGROH133_05769" /note="Uncharacterized protein conserved in bacteria (DUF2155); Region: DUF2155; cl01970" /db_xref="CDD:194218" gene complement(1254320..1254934) /gene="aat" /locus_tag="AGROH133_05772" /db_xref="GeneID:10267014" CDS complement(1254320..1254934) /gene="aat" /locus_tag="AGROH133_05772" /EC_number="2.3.2.6" /note="leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; Leu/Phe-tRNA-protein transferase" /codon_start=1 /transl_table=11 /product="leucyl/phenylalanyl-tRNA-protein transferase" /protein_id="YP_004278552.1" /db_xref="GI:325292688" /db_xref="GeneID:10267014" /translation="MVGRRSKNNGITVDILLRAYSAGLFPMADSADDPELFWVEPEIR GIIPLNDFHISKSLAKAMRKKPFEIRFNTAFEAVMAGCAAEAPDRPSTWINATIRKLY TELHQIGHAHSVEAWDGKELVGGLYGVSLGAAFFGESMFSRRTNASKICLVHLVERLR ASGFVLLDTQFTTEHLKTFGAIDVPKQQYAKMLDQAVNQPDLQF" misc_feature complement(1254335..1254904) /gene="aat" /locus_tag="AGROH133_05772" /note="Leucyl/phenylalanyl-tRNA protein transferase; Region: Leu_Phe_trans; cl01006" /db_xref="CDD:186298" gene complement(1254940..1256286) /gene="accC" /locus_tag="AGROH133_05773" /db_xref="GeneID:10267015" CDS complement(1254940..1256286) /gene="accC" /locus_tag="AGROH133_05773" /EC_number="6.3.4.14" /EC_number="6.4.1.2" /note="an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism" /codon_start=1 /transl_table=11 /product="Biotin carboxylase" /protein_id="YP_004278553.1" /db_xref="GI:325292689" /db_xref="GeneID:10267015" /translation="MVSKILIANRGEIALRVLRAAKELGIPTVAVHSTADADAMHVRL ADESVCIGPPPSRDSYLNIHQIVAACEITGADAVHPGYGFLSENAKFADILDAHGITF IGPTAEHIRLMGDKITAKQTAQELGIPVVPGSDGEVKPENALEIARTIGFPVLIKATA GGGGRGMKVAKTEADLDEAVSTARSEAAAAFGNDAVYMEKYLGKPRHIEVQVFGDGEG NAIHLGERDCSLQRRHQKVLEEANSPALTVEQRMKIGEICASAMRKLKYRGAGTIEFL YENGEFYFIEMNTRLQVEHPVTEAITGMDLVQEQIRVASGQGLSVTQADIEFHGHAIE CRINAEDPRTFVPSPGTLTYFHTPGGLGVRVDSGAYQGYKIPPYYDSMIGKLIVHGRD RDECIRRLRRALDEFVVDGIKTTLPLFQDLLQNEDILSGNYDIHWLEKYLAGDASH" misc_feature complement(1254943..1256286) /gene="accC" /locus_tag="AGROH133_05773" /note="acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591" /db_xref="CDD:181492" misc_feature complement(1255960..1256277) /gene="accC" /locus_tag="AGROH133_05773" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature complement(1255327..1255944) /gene="accC" /locus_tag="AGROH133_05773" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature complement(1254970..1255287) /gene="accC" /locus_tag="AGROH133_05773" /note="Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365" /db_xref="CDD:195719" gene complement(1256299..1256784) /gene="accB" /locus_tag="AGROH133_05774" /db_xref="GeneID:10267016" CDS complement(1256299..1256784) /gene="accB" /locus_tag="AGROH133_05774" /EC_number="6.4.1.2" /note="composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolismn; Biotin carboxyl carrier protein" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase biotin carboxyl carrier protein subunit" /protein_id="YP_004278554.1" /db_xref="GI:325292690" /db_xref="GeneID:10267016" /translation="MSEKKQGIDKELIRELANILNDTDLSEIEVEQEDLRIRVSRAAP STTVYAAAPTGYAAPAPAPAAAAVAAPAAPAVAAAPARNPANTVTSPMVGTVYLSPAP GARPFVEVGATVKEGQTILIVEAMKTMNQIPAPKSGKVVEIVVNDSQPVEYGEALVVI E" misc_feature complement(1256302..1256763) /gene="accB" /locus_tag="AGROH133_05774" /note="acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated; Region: PRK06302" /db_xref="CDD:180522" misc_feature complement(1256305..1256526) /gene="accB" /locus_tag="AGROH133_05774" /note="The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase...; Region: biotinyl_domain; cd06850" /db_xref="CDD:133459" misc_feature complement(order(1256380..1256382,1256401..1256409, 1256434..1256436)) /gene="accB" /locus_tag="AGROH133_05774" /note="carboxyltransferase (CT) interaction site; other site" /db_xref="CDD:133459" misc_feature complement(1256404..1256406) /gene="accB" /locus_tag="AGROH133_05774" /note="biotinylation site [posttranslational modification]; other site" /db_xref="CDD:133459" gene complement(1256810..1257298) /gene="aroQ" /locus_tag="AGROH133_05775" /db_xref="GeneID:10267017" CDS complement(1256810..1257298) /gene="aroQ" /locus_tag="AGROH133_05775" /EC_number="4.2.1.10" /note="catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase II" /codon_start=1 /transl_table=11 /product="3-dehydroquinate dehydratase" /protein_id="YP_004278555.1" /db_xref="GI:325292691" /db_xref="GeneID:10267017" /translation="MKAAQSIGVADFLMETRMGNIIIVINGPNLNMLGKREPGIYGGK TLKDIENDCLAAGADLGFAVEFRQSNHEGVLVDWLHEAGERAAGVVINPGAYSHTSIA LHDAIRAISTPVVEVHISNIHAREEFRHKSMVSPAAKGMVCGFGPYGYIMALHALKNI TA" misc_feature complement(1256822..1257235) /gene="aroQ" /locus_tag="AGROH133_05775" /note="Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway...; Region: DHQase_II; cd00466" /db_xref="CDD:63885" misc_feature complement(order(1256912..1256914,1256972..1256974, 1256981..1256986,1256993..1256995,1257014..1257016, 1257059..1257061,1257068..1257070,1257077..1257091, 1257206..1257208,1257212..1257214)) /gene="aroQ" /locus_tag="AGROH133_05775" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:63885" misc_feature complement(order(1256912..1256914,1256939..1256947, 1256984..1256986,1257005..1257007,1257014..1257019, 1257023..1257025,1257176..1257178,1257191..1257193)) /gene="aroQ" /locus_tag="AGROH133_05775" /note="active site" /db_xref="CDD:63885" misc_feature complement(order(1256822..1256824,1256831..1256833, 1256843..1256845,1256855..1256857,1256864..1256872, 1256876..1256887,1256891..1256896,1256927..1256932, 1256936..1256938)) /gene="aroQ" /locus_tag="AGROH133_05775" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:63885" gene complement(1257372..1258139) /locus_tag="AGROH133_05776" /db_xref="GeneID:10267018" CDS complement(1257372..1258139) /locus_tag="AGROH133_05776" /note="DSBA-like thioredoxin domain, outer membrane protein; Protein-disulfide isomerase" /codon_start=1 /transl_table=11 /product="DSBA oxidoreductase" /protein_id="YP_004278556.1" /db_xref="GI:325292692" /db_xref="GeneID:10267018" /translation="MAHLLRSTLLASVTAFSMAFASLPAHALDDKQKKELGEFIKQYL IENPEIMLEVQDALERKQYATRNAKAAEAVADNQKTIFESKYDLALGNPDGDVTLVEF FDYNCGYCKRAMGDMDNILKTDKKVRVVLKEFPILGPESVAAHRVSNAVKLLAPAKYP EFQRALLGGRGRANEDSAMEVATSLGLKEADIRKSMAENPNDAQVQETYKLANSLGIT GTPSYIVGNEAVFGAVGADPLKEKIANMRSCGKATCS" misc_feature complement(1257399..1258139) /locus_tag="AGROH133_05776" /note="Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]; Region: DsbG; COG1651" /db_xref="CDD:31837" misc_feature complement(1257408..1257869) /locus_tag="AGROH133_05776" /note="DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a...; Region: DsbA_Com1_like; cd03023" /db_xref="CDD:48572" misc_feature complement(order(1257810..1257812,1257819..1257821)) /locus_tag="AGROH133_05776" /note="catalytic residues [active]" /db_xref="CDD:48572" gene 1258305..1259468 /gene="aspB" /locus_tag="AGROH133_05778" /db_xref="GeneID:10267019" CDS 1258305..1259468 /gene="aspB" /locus_tag="AGROH133_05778" /EC_number="2.6.1.1" /note="Pyridoxal phosphate-dependent transferase, major region, Aminotransferase class I and II; Aspartate/tyrosine/aromatic aminotransferase" /codon_start=1 /transl_table=11 /product="aspartate aminotransferase" /protein_id="YP_004278557.1" /db_xref="GI:325292693" /db_xref="GeneID:10267019" /translation="MPLITMSKRSAVEPFHAMDILAEANRRRQAGRPVISMAVGQPSH PAPKASLAAAQEALKHGRIGYTDALGLRELREAIAGHYRLRHQVIVDPARIAVTTGSS AAFNLAFLSLFDAGDHVAIARPGYPAYRNILKALGLNVVEVPVTAETGYTLTPASLER AETRAGCKLKGVLLASPANPTGTVTGREALKRLANYCESRDIAFISDEIYHGLTFVGE ETSALELTDNAVVINSFSKYYCMTGWRIGWMVLPEKLVRPVECLAQSLYISPPELSQL AATAAFSAAEELDVYRESYRTNRDFLMTRLPEIGLPLASPMDGAFYAYVDTSRFSNDS MDFAKRMLAEIDVAATPGMDFDPEEGHRALRISYAGSVSDIAEAVGRIAGWLK" misc_feature 1258347..1259465 /gene="aspB" /locus_tag="AGROH133_05778" /note="hypothetical protein; Provisional; Region: PRK08912" /db_xref="CDD:181580" misc_feature 1258407..1259453 /gene="aspB" /locus_tag="AGROH133_05778" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(1258602..1258610,1258680..1258682,1258839..1258841, 1258932..1258934,1259004..1259006,1259010..1259015, 1259037..1259039) /gene="aspB" /locus_tag="AGROH133_05778" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(1258611..1258613,1258710..1258712,1258911..1258913, 1259031..1259039,1259124..1259126) /gene="aspB" /locus_tag="AGROH133_05778" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 1259013..1259015 /gene="aspB" /locus_tag="AGROH133_05778" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(1259499..1260182) /locus_tag="AGROH133_05779" /db_xref="GeneID:10267020" CDS complement(1259499..1260182) /locus_tag="AGROH133_05779" /note="Bacterial regulatory protein, ArsR; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_004278558.1" /db_xref="GI:325292694" /db_xref="GeneID:10267020" /translation="MKDGPLIANVAALIGDPARANILTALMDGRALTASELAEAAGVT LQTASGHLSKLSDAQLLKAEKQGRHRYFRLSDADVAQVLEALMGLAQRTGAVRVRTGP KDTALREARICYDHLAGESGVALLSTITAKGLVTSGDDPALTDSGRDFFSSFGIDLSP LEKARRPVCLHCLDWSERRHHLGGGLGASLLKAMQQRDWLRQGNGRVLTFTRKGEKAF ASTFGCSPA" misc_feature complement(1259922..1260152) /locus_tag="AGROH133_05779" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature complement(order(1259922..1259930,1259934..1259942, 1259946..1259948,1260006..1260008,1260099..1260101, 1260108..1260113,1260120..1260125,1260132..1260134, 1260141..1260143,1260147..1260152)) /locus_tag="AGROH133_05779" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(1259967..1259975,1259988..1259996, 1260012..1260017,1260021..1260026,1260033..1260038, 1260042..1260053,1260078..1260086,1260126..1260134, 1260144..1260149)) /locus_tag="AGROH133_05779" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(1260075..1260077,1260084..1260086)) /locus_tag="AGROH133_05779" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene 1260257..1260583 /locus_tag="AGROH133_05781" /db_xref="GeneID:10267021" CDS 1260257..1260583 /locus_tag="AGROH133_05781" /note="NIPSNAP" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278559.1" /db_xref="GI:325292695" /db_xref="GeneID:10267021" /translation="MLTCFIRYEIDPFKVGAFDQYARNWGEAIPRCGADLIGYYAPKE GSSTIAYGVYNIENLAAYEAYRARLAADPAGRENYEFAWREQFIRREDRLFLRLASAP HGGGGR" misc_feature 1260269..1260556 /locus_tag="AGROH133_05781" /note="NIPSNAP; Region: NIPSNAP; pfam07978" /db_xref="CDD:191913" gene 1260580..1260945 /locus_tag="AGROH133_05782" /db_xref="GeneID:10267022" CDS 1260580..1260945 /locus_tag="AGROH133_05782" /note="Dimeric alpha-beta barrel, Antibiotic biosynthesis monooxygenase; Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides" /codon_start=1 /transl_table=11 /product="antibiotic biosynthesis monooxygenase" /protein_id="YP_004278560.1" /db_xref="GI:325292696" /db_xref="GeneID:10267022" /translation="MIAVIFEVWPAEGKKQHYLDIAASLRAELETIDGFLSVERFQSI SNPDKMLSLSFFRDEEAVKAWRNTASHRAAQSLGRSGVFCNYRLRIATVMRDYGLKER EEAPTDSRQVHAADNQVRR" misc_feature 1260580..1260885 /locus_tag="AGROH133_05782" /note="Antibiotic biosynthesis monooxygenase; Region: ABM; cl10022" /db_xref="CDD:195949" gene 1261093..1261797 /gene="fabG" /locus_tag="AGROH133_05783" /db_xref="GeneID:10267023" CDS 1261093..1261797 /gene="fabG" /locus_tag="AGROH133_05783" /EC_number="1.1.1.100" /note="Short-chain dehydrogenase/reductase SDR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="3-oxoacyl-acyl carrier protein reductase" /protein_id="YP_004278561.1" /db_xref="GI:325292697" /db_xref="GeneID:10267023" /translation="MSAEKVAIVTAGGSGMGAAVAKRLSSDGYKLAILSSSGKGEALA KELGGIGVTGSNQSNDDLNRLVELTLEKFGRIDVLVNSAGHGPRASILDITDEQWHTG LDVYLMNVIRPTRIVAPFMVKQKAGSIVNISTAWAFEPSSMFPTSAVFRAGLASYTKI FSDTYAADNVRMNNVLPGWIDSLPATEERRQAVPMQRYGTSEEIAATVAFLASEGAGY ITGQNIRVDGGLTRSV" misc_feature 1261102..1261788 /gene="fabG" /locus_tag="AGROH133_05783" /note="putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; Region: BKR_like_SDR_like; cd05344" /db_xref="CDD:187602" misc_feature 1261105..1261785 /gene="fabG" /locus_tag="AGROH133_05783" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: fabG; PRK05565" /db_xref="CDD:180133" misc_feature order(1261123..1261125,1261129..1261140,1261195..1261203, 1261252..1261260,1261336..1261344,1261405..1261407, 1261486..1261494,1261531..1261533,1261543..1261545, 1261621..1261632,1261636..1261641) /gene="fabG" /locus_tag="AGROH133_05783" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187602" misc_feature order(1261492..1261494,1261531..1261533,1261543..1261545) /gene="fabG" /locus_tag="AGROH133_05783" /note="putative active site [active]" /db_xref="CDD:187602" gene complement(1262004..1264961) /gene="rne" /locus_tag="AGROH133_05784" /db_xref="GeneID:10267024" CDS complement(1262004..1264961) /gene="rne" /locus_tag="AGROH133_05784" /EC_number="3.1.4.-" /note="RNaseEG: ribonuclease, Rne/Rng family; Ribonucleases G and E" /codon_start=1 /transl_table=11 /product="ribonuclease E" /protein_id="YP_004278562.1" /db_xref="GI:325292698" /db_xref="GeneID:10267024" /translation="MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYL AKVTRVEPSLQAAFVDYGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDD FESADAPEPGAPAVDLSQADQPDVGIVAVSETTDAVVVDETVAAAAAEEVSEDVTAVA VEAVAEEAPKKRTRRPRAKKKVAEEEAVSDTTAEASSEEDGSTGGEMAAMVDTDTISE EVEGLRRGNDDDDDDDDDDHHEKEVIESVGAEDAMEEVPDRVARKPRKQYRIQEVIKR RQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDRKRLKE IARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVYEEG SLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSG IEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAE EVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLE MSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCT PETALYLLNHKRGTIVDYEGRFGVAIIIAADAGVGAQHFAIDRGEAVENPVKIESLIQ MLPSFVEEEDDFVVEVEEDEEEEEIVKAQASEPRQQQQQGDNGEDGKRKRKRRRRRRG KGGQNDQNGAVDAQAGDDTGADDADDEDGVETDEAADDADENGVNEAASSDEEGKRKR RRRGKRGGRRNRAEDEALDAAGTESGEEGETEGESEEVSAAASVTEEPTAAEVVEGVV ADVVEAEAPKKPRRTRKAKAKTEDVPPAEAAPQAEVAAKTVETVEPVIVEPAVVVETV VDVALDEVGEASADLGSEAVAPATEEKVRANRGSNVSNSEPVVTSSGTPANPDGDEPK PRKGGWWQRKGFF" misc_feature complement(<1264725..1264865) /gene="rne" /locus_tag="AGROH133_05784" /note="S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453" /db_xref="CDD:88419" misc_feature complement(1264047..>1264190) /gene="rne" /locus_tag="AGROH133_05784" /note="S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain...; Region: S1_like; cl09927" /db_xref="CDD:195927" misc_feature complement(1263024..1264157) /gene="rne" /locus_tag="AGROH133_05784" /note="Ribonucleases G and E [Translation, ribosomal structure and biogenesis]; Region: CafA; COG1530" /db_xref="CDD:31719" gene complement(1265221..1265361) /locus_tag="AGROH133_05785" /db_xref="GeneID:10267025" CDS complement(1265221..1265361) /locus_tag="AGROH133_05785" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278563.1" /db_xref="GI:325292699" /db_xref="GeneID:10267025" /translation="MPAGCQSKKTLALQNGQSSAVVTFILKLDQFRPWPETYPVAMPP LL" gene 1265691..1266878 /gene="amiA" /locus_tag="AGROH133_05786" /db_xref="GeneID:10267026" CDS 1265691..1266878 /gene="amiA" /locus_tag="AGROH133_05786" /EC_number="3.5.1.28" /note="Cell wall hydrolase/autolysin, catalytic, N-acetylmuramoyl-L-alanine amidase" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="YP_004278564.1" /db_xref="GI:325292700" /db_xref="GeneID:10267026" /translation="MPVVFSVAAFVSCVPQALAVEPLIANQARIIGDEARTRIVLDFA EEPEFDIHYLDSPARIVVDFPAVNFAFPASALAPTGLFSDIRFGSMGQDSARIVLTAK KPVQVAVAETKKGEDGTSFRFVLDAEITTKAKFAELVKEQQWRAPAPVSTAAITPDDK TSRQTDFVIAVDAGHGGIDAGASGGVTGTEEKVITLTFAKELVERMNREPGIKAFLTR DSDTFLALSERVTIARQNNANLFISLHADTLKQKGIRGATVYTLSDRASDRRAQELAE RENKSDQIAGVAASSEPPEVADILLDFTRRETQAFSVTLAENIVSSFEGQVGLINNPH RYAGFMVLRAHDVPSVLLELGFLSNPEDEKLLLDAEWRKKVADTLATAVGRYRTKAMA NGG" misc_feature 1265736..1266053 /gene="amiA" /locus_tag="AGROH133_05786" /note="Localisation of periplasmic protein complexes; Region: AMIN; pfam11741" /db_xref="CDD:152177" misc_feature 1266255..1266839 /gene="amiA" /locus_tag="AGROH133_05786" /note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696" /db_xref="CDD:119407" misc_feature order(1266261..1266263,1266423..1266425,1266747..1266749) /gene="amiA" /locus_tag="AGROH133_05786" /note="active site" /db_xref="CDD:119407" misc_feature order(1266261..1266263,1266423..1266425) /gene="amiA" /locus_tag="AGROH133_05786" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:119407" gene 1267205..1269649 /gene="mrcA" /locus_tag="AGROH133_05787" /db_xref="GeneID:10267027" CDS 1267205..1269649 /gene="mrcA" /locus_tag="AGROH133_05787" /EC_number="2.4.2.-" /note="Penicillin-binding protein 1A, Transglycosylase; Membrane carboxypeptidase/penicillin-binding protein" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 1a" /protein_id="YP_004278565.1" /db_xref="GI:325292701" /db_xref="GeneID:10267027" /translation="MIRLIGYFFGLASVLFLCAAAAGAIYLHGVTKDLPDYAVLSTYE PPVTTRVHAGNGALMAEYAHEKRLFLPIQAIPDRVKAAFLSAEDKNFYNHPGVDIWGL GRAVLVNLQNIGSGRRPVGASTITQQVAKNFLLTNDQTFDRKLKEALLSFRIEQTYSK DKILELYLNEIFFGLNSYGIAGAALTYFNKSVTELTIAETAYLASLPKGPANYHPIRR EKAALERRNWVIDRMAENGYITVGDAEDAKKQPLGVNLRRGGAHIFASDYFAEEVRRQ IVEKYGEQALLEGGLSVRTSFDPQIQMEARKALQDGLVQYDERRGFRGPVEKIETTGD WTAALAKVKGLRDVPEWKIAVVLAVAADGIDIGVQVDPDAEDGDKRTRGHISAENLRW AYRDATGKKPTAKSPVGVLAVGDVVYAQPLSGSGNEYRLRQPPKVQGGMMVMDPHTGR VLAMVGGFSYAQSEFNRATQAMRQPGSSFKPFIYAAALDNGYTPASVILDAPIEVVSG GQVWKPQNYGGGSAGPSTLRLGIEKSRNLMTVRLAQDMGMNLVAEYAERFGIYDKMPP LLAMSLGSGETTIMRMVSAYSVIANGGKQIKPTLIDRIQDRYGKTIFRHEERACEGCN ATSWQNQDEPVIVDNREQVLDPMTAYQTTSMLEGVVQRGTAAGKIKVDLPVAGKTGTT NDEKDAWFVGYTPDMVAGLYIGFDSPAPLGRGGTGGSLSAPIFGEFIADAAKHLEPSK FIVPEGMKFIAVNRKTGMAASEGEPDTIMEAFKPGTGPADTFSVIGAEGMSQEDILKT SPQAQQAITGGGGGLY" misc_feature 1267205..1269616 /gene="mrcA" /locus_tag="AGROH133_05787" /note="Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]; Region: MrcA; COG5009" /db_xref="CDD:34614" misc_feature 1267367..1267906 /gene="mrcA" /locus_tag="AGROH133_05787" /note="Transglycosylase; Region: Transgly; cl07896" /db_xref="CDD:195645" misc_feature 1268519..1269394 /gene="mrcA" /locus_tag="AGROH133_05787" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene 1269851..1270879 /gene="prfB" /locus_tag="AGROH133_05790" /db_xref="GeneID:10267028" CDS 1269851..1270879 /gene="prfB" /locus_tag="AGROH133_05790" /note="catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; Protein chain release factor B" /codon_start=1 /transl_table=11 /product="peptide chain release factor 2" /protein_id="YP_004278566.1" /db_xref="GI:325292702" /db_xref="GeneID:10267028" /translation="MNNKAEDPTLWNDATEAQKLMRERQQLDDSINGVKALEQQLKDN VELIELGEMEGDDEIVKDAEDALKALRSEANRRQVEAMLSGEADSNDTYLEVHSGAGG TESQDWANMLLRMYTRWADREGFKVEVLEVHDGEEAGIKSATILVKGHNAFGWLKTES GVHRLVRISPYDSNARRHTSFSSVWVYPVVDDSIQIDINESDCRIDTYRSSGAGGQHV NTTDSAVRITHIPTGIAVACQQERSQHKNRAKAWDMLRARLYEVELQKREDAANAQAA SKTDIGWGHQIRSYVLQPYQLIKDLRTGVESTAPGNVLDGDLNQFMEAALAHRISGGA DVEVADID" misc_feature 1269857..1270876 /gene="prfB" /locus_tag="AGROH133_05790" /note="peptide chain release factor 2; Provisional; Region: PRK07342" /db_xref="CDD:168914" misc_feature 1269995..1270327 /gene="prfB" /locus_tag="AGROH133_05790" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" misc_feature 1270418..1270756 /gene="prfB" /locus_tag="AGROH133_05790" /note="RF-1 domain; Region: RF-1; cl02875" /db_xref="CDD:194471" gene 1270953..1271423 /locus_tag="AGROH133_05791" /db_xref="GeneID:10267029" CDS 1270953..1271423 /locus_tag="AGROH133_05791" /note="Isochorismatase hydrolase; Amidases related to nicotinamidase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278567.1" /db_xref="GI:325292703" /db_xref="GeneID:10267029" /translation="MKQALYIVDVQPSFNPPAALVAEISALAATMPSVASVERHDESV TPFERQLGWKPGRDDCSLVAADWIFIKHGYAPPRAAIDHLLSLKLDRVLVCGIQADTC VLAAGFALFDAGLHPTLLPWLTVGSSLDRSGELGARLWKHHFGAVLAGPHELNA" misc_feature <1271046..1271396 /locus_tag="AGROH133_05791" /note="Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cl00220" /db_xref="CDD:185838" gene complement(1271504..1272013) /locus_tag="AGROH133_05792" /db_xref="GeneID:10267030" CDS complement(1271504..1272013) /locus_tag="AGROH133_05792" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278568.1" /db_xref="GI:325292704" /db_xref="GeneID:10267030" /translation="MMAMPLKKPLLAALIFAATALPVRAQTEAIDNLPVSAIFVVSSG MWEEHNLEPVKGPDGQLRPPPATPTRGYYKVVAIRQGDGTAKVYLQRIATSANGPNLL ENIELEEFSQMKSYVTDIRPESSNGASASPGLFVTVYLKTDPQIREAESWTILIDELG EMKIEKASN" gene complement(1272026..1272799) /gene="ppnK" /locus_tag="AGROH133_05794" /db_xref="GeneID:10267031" CDS complement(1272026..1272799) /gene="ppnK" /locus_tag="AGROH133_05794" /EC_number="2.7.1.23" /note="catalyzes the phosphorylation of NAD to NADP; NAD kinase" /codon_start=1 /transl_table=11 /product="inorganic polyphosphate/ATP-NAD kinase" /protein_id="YP_004278569.1" /db_xref="GI:325292705" /db_xref="GeneID:10267031" /translation="MSHSNCSLSFVASATEEAQRALEELKGAYGNTPFDEAEVIVALG GDGFMLQILNETMNSGKRVYGMNRGSVGFLMNDYRVDGLVERIAVATGNDFHPLRMTT TDSDGDEFTALAMNEVSLFRQSHQAAKLRVEVDGKTRLEELICDGMMVATPAGSTAYN FSAHGPILPLESPLLALTPVSAFRPRRWRGALLPNKVTVDIHVLERDKRPVNAVADHT EVKSVRHVRIAQSQDRTARILSDPDRSWSDRVLAEQFNN" misc_feature complement(1272035..1272766) /gene="ppnK" /locus_tag="AGROH133_05794" /note="Diacylglycerol kinase catalytic domain; Region: DAGK_cat; cl01255" /db_xref="CDD:194084" gene 1273043..1274023 /gene="phzF" /locus_tag="AGROH133_05795" /db_xref="GeneID:10267032" CDS 1273043..1274023 /gene="phzF" /locus_tag="AGROH133_05795" /note="Phenazine biosynthesis PhzC/PhzF protein; Predicted epimerase, PhzC/PhzF homolog" /codon_start=1 /transl_table=11 /product="phenazine antibiotic biosynthesis related protein" /protein_id="YP_004278570.1" /db_xref="GI:325292706" /db_xref="GeneID:10267032" /translation="MRRDVRQLARNKRNGEWQETGVVLNYNIYDVFTETKMAGNPLAV MYDADGLDQVTMQAIAREMNLSETVFVNRSGNPAHAASLRIFTPSGELPFAGHPTVGA AIAIAERNRNEGDDDIDMVCVLEEKVGPVRCAVKMRAGAVSFAEFDLPRKSSRVTLPL DHAALADALGVSEGHLGFENHVPSIWTAGVPFLLVPLHNIAAISEMDFDANLWLRTAP LVEGRLTAAYIYCRGGVNHAAKFHARMFSPEMGISEDPATGSAAAALSGAIHHFDGLT DGHYPLLIEQGVEMERPSHIHLRMDIKDNEIARARIGGHAVRVASGTFEI" misc_feature 1273112..1274020 /gene="phzF" /locus_tag="AGROH133_05795" /note="Predicted epimerase, PhzC/PhzF homolog [General function prediction only]; Region: COG0384" /db_xref="CDD:30733" misc_feature 1273115..1274020 /gene="phzF" /locus_tag="AGROH133_05795" /note="Diaminopimelate epimerase; Region: DAP_epimerase; cl14668" /db_xref="CDD:187422" gene complement(1274128..1280679) /locus_tag="AGROH133_05796" /db_xref="GeneID:10267033" CDS complement(1274128..1280679) /locus_tag="AGROH133_05796" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278571.1" /db_xref="GI:325292707" /db_xref="GeneID:10267033" /translation="MANNKISDSVDETAFQALEDALQLGAFEDKPESRKTTAPKQPEA RLKEASRQTPAPEAARAPAEQAPRSPNLEAANDGSKRSPAMILKSLEGGSIGGALRNA TIMSVIWALGGLGIAHLIYGSALWNIGSVADLAAIPGLMAIVVGIVVPIMLFFAFAIM MARARDLRNAARSMAEVALRLAEPETVASDRIMSVGQAVRREVSAMNDGIERTIARAT ELETLVHSEVNALERSYADNELRVRSLVQELSAERDAIVNHAERIRSSIVGAQEQIKE ELSIVGEELSMRLSTTGEAFASMIDTRSAALLEKSRASTEAMGSLIAAKTENLLQALN SSGATLSSEFDMRLHNLTSTLDERGEVLLERFAIHASTLDSGAESLNSALEERTRQLN ETLSTRTLELNRNIDRGQQIIGGSLDNVLDKLSTTLEEKGLSFRQSLQSTADDAIMDL DLRSGLYEERLQATVGQVNSAFDEHVADFASAFDQRAGSLDSKLMESLARINETVAGG SEALDTMLTSGLERIGNTMTDQSLALATALGTGQEMLESALETRTRAFSDAIGQRTAE ITDAFANSHEKIDGVLAERSNALFGALSASQDRFDEALASRSLAITGSVSGTAERLAA MLEERAAAINSVVADVERRLSETLETRAAAITGAVSGIEDRISDTLESRTAALHDVVS GAENRIAETLDGRTAALSSAISGVEERIADTMDSRTLSLDMTFANVEERLSETLDNRT SALSGIVASAEERIAGALDSRTSTFGDVVAGAESRIAETLDGRTAALNAVVSGAEERI ADALDSRTMALDMAFSGAEEKITEALDTRTAVLGELVAGAETRIAETLDGRTAALNAV VSGVEDRIADALDSRTMAFDMAFSGAEEKITEALDTRTAVLGELVAGAETRIASALDS RTASLKNVVSGAEERITDVLDSRTMALDLSFSGIEEKIADILDGRTAALHSAVSGVED RIADALDSRTAALSGIVSSAEERIADALDSRTMALDMTISGVEERISEAMDARTASLS LAAAGVGQRLESTAFTLENALASGHERLETMLGSQAERIAGSLERNSGLIEQSVSGAA SRIESVVEDGSSRFAQTVEEGVSRLENNLSQSHEDIRTALEQRQADIAATLSSATTQM GDMLSEQAMMIGTTVASSASMLELSLETQQETLQKAIDGSAATLEQRLRNSAGDIAVK IGEAAREIGGATDALSSRIETSIGTVTGRLDETGTRIETSLGALQERVSSDLGNVNTS IEDAGRRFADALEDKTAAFARTSDDAAQRITGILDEQTIRVADTFESRTSRLAETFDA GSARIDERLGTMDRALTIGLENVNRTIEGKASELAVGLRGAVISATQSIDEEAVRSTA LLAKTGSEFAEQVQAQNDAFTKAIEERSGEIVNRISDAQTRLSGQAAAVAQTFSEAGN IIVNKVAEAEAVVRSQVGVISETLTGVESALDARGESIRSALDNRTRELNSMLASRSA ELSRLIEEKAKPVVDEYATIGREAAEKIVSAAQQSAELLSQSNSGMVGMVEQAISDYA NAGSEAASKLVAATRQSTDMLSQTHTAMADAVEEGIDKYTRTGSDVANKLVAATRQST DMLSQTHNSMAEIVEKSANNFNSAVERAAQEFGTADEALNASATRFSESALQAADMVS SSSRLLEGKIDRLSNISGQTLAQVAGIVGRFEEHSKVLSQASELLNAAQSSLVGTLEE RQDALRSLSVGLVKRSEEIETAMRGVVSVVETTLNEAEERSQNVAGNLRDNLQASFSD IGRSLDETEQRARSAAQTMRGALLAAGQDASRSIESTLSDAQKYSDELVNRLRGGVES SLSEVDNLLGSASEKSNAAAANLKETLRQAVEEAVSRFAGATDEIRRSSHDIRRELDA TRAELKRGAFDLPEEAKESAAAMRRAVSEQIKALQDISQLVGRSTQQMEVSEPVARAI AATQPAAERRVEARPQPTAATPAQPPRPAQPQPAAAPALRGTLPLENRQVENRQTPAP SQAAAAPAARREEGGGWISDLLRGASQESAAASAPRASGDQQPTRAADTRNPRHMVES LNSLSVDIARAIDHDASVELWRRYQRGERDVFTRRLYTLKGQTTFDEIKRKYEREAEF RTAVDRYITDFEKLLADVARTDRDRTVTQSYLTSDTGKVYTMLAHAAGRFN" gene 1281159..1281527 /locus_tag="AGROH133_05799" /db_xref="GeneID:10267034" CDS 1281159..1281527 /locus_tag="AGROH133_05799" /note="Hpt domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278572.1" /db_xref="GI:325292708" /db_xref="GeneID:10267034" /translation="MAAVSIAFEAPDNFGGAPAAATRPIDFEHLARQTMGDKELEIEV LQLFSRNARAALHEMAGADDKTVKATAHRLKGAAQAVGASTVSTAAAAVEDKGNDSAA VARLAAAIVEAENFILKLCR" gene 1281655..1281975 /gene="fdx" /locus_tag="AGROH133_05800" /db_xref="GeneID:10267035" CDS 1281655..1281975 /gene="fdx" /locus_tag="AGROH133_05800" /note="Beta-grasp fold, ferredoxin-type; Ferredoxin" /codon_start=1 /transl_table=11 /product="ferrodoxin" /protein_id="YP_004278573.1" /db_xref="GI:325292709" /db_xref="GeneID:10267035" /translation="MTKLTIVAFDGTPHELDVSNGSTVMENAVRNSIPGIDAECGGAC ACATCHVYVDDAWAERVGGPEPMEEDMLDFAFEVRPTSRLSCQIKMKDELDGLVVHVP ERQG" misc_feature 1281655..1281969 /gene="fdx" /locus_tag="AGROH133_05800" /note="2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cl00159" /db_xref="CDD:193686" gene complement(1282284..1282910) /locus_tag="AGROH133_05801" /db_xref="GeneID:10267036" CDS complement(1282284..1282910) /locus_tag="AGROH133_05801" /note="Protein of unknown function DUF922, bacterial; Predicted secreted Zn-dependent protease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278574.1" /db_xref="GI:325292710" /db_xref="GeneID:10267036" /translation="MTISSRALCAVFAGALAFSMPGSAFSETIVSKTYSYFSISGKTA ADLDKQLSKHGPLTRKTGARHPGATEIKFGGELTYVEKNGMCSVGSTKVLLNTRILLP QWKNRRRTTAELAFIWDTLLADIKRHEERHAEIARTHARSLERQLTGLRPQKDCETLQ AMVGKITQTVMDEHDKDQLRFDIVESKNFDARMTRLLKNRIEQGQNRR" misc_feature complement(1282293..1282910) /locus_tag="AGROH133_05801" /note="Bacterial protein of unknown function (DUF922); Region: DUF922; cl02415" /db_xref="CDD:194306" gene 1283015..1283875 /gene="folP" /locus_tag="AGROH133_05804" /db_xref="GeneID:10267037" CDS 1283015..1283875 /gene="folP" /locus_tag="AGROH133_05804" /EC_number="2.5.1.15" /note="Dihydropteroate synthase-like, Pterin binding enzyme; Dihydropteroate synthase and related enzymes" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase" /protein_id="YP_004278575.1" /db_xref="GI:325292711" /db_xref="GeneID:10267037" /translation="MITAGSNVWQAAHGRSLKLDGRGRIMAIVNATPDSFSDGGRYLA VDAAFSHALTCVEEGADIIDVGGESTRPGAAEVTEGEEQDRVLPVIERLRRETDVLIS VDTYRASTARLAIEAGAHIVNDVFGLQKDGNMAGVVAAARAGVCIMHTGRDRQKRADV IEDQFEFLNRSLEMAEAAGIARDAIVLDPGFGFAKDERENVELMARFGELAAFDLPVL AGTSRKRFIGSLTGRDAAQERDIGTAATTVILRLAGAAIFRVHNVAVTRDALAIADAV LAKASARPDA" misc_feature 1283084..1283815 /gene="folP" /locus_tag="AGROH133_05804" /note="DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and...; Region: DHPS; cd00739" /db_xref="CDD:29545" misc_feature 1283084..1283815 /gene="folP" /locus_tag="AGROH133_05804" /note="dihydropteroate synthase; Region: DHPS; TIGR01496" /db_xref="CDD:162390" misc_feature order(1283102..1283104,1283324..1283326,1283381..1283383, 1283387..1283389,1283456..1283458,1283576..1283578, 1283672..1283674,1283684..1283686,1283789..1283791, 1283795..1283797) /gene="folP" /locus_tag="AGROH133_05804" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29545" misc_feature order(1283615..1283617,1283627..1283632,1283747..1283749, 1283759..1283761,1283771..1283773) /gene="folP" /locus_tag="AGROH133_05804" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29545" misc_feature 1283678..1283686 /gene="folP" /locus_tag="AGROH133_05804" /note="inhibitor binding site; inhibition site" /db_xref="CDD:29545" gene 1283953..1284318 /gene="folB" /locus_tag="AGROH133_05805" /db_xref="GeneID:10267038" CDS 1283953..1284318 /gene="folB" /locus_tag="AGROH133_05805" /EC_number="4.1.2.25" /codon_start=1 /transl_table=11 /product="Dihydroneopterin aldolase" /protein_id="YP_004278576.1" /db_xref="GI:325292712" /db_xref="GeneID:10267038" /translation="MSRYTIILKNCSFFARHGLLEQEEVLGQRFFVDAEMEVEAGNAL ETDDIENTVDYGVAFAVIEKIVVGQRRYLIEALANDIAKALRARYPQIVWLRITVRKP SAPVPGILDYAQVSVEHRA" misc_feature 1283959..1284306 /gene="folB" /locus_tag="AGROH133_05805" /note="Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines...; Region: DHNA_DHNTPE; cd00534" /db_xref="CDD:29762" misc_feature order(1283962..1283994,1284010..1284036,1284259..1284264, 1284277..1284303) /gene="folB" /locus_tag="AGROH133_05805" /note="homooctamer interface [polypeptide binding]; other site" /db_xref="CDD:29762" misc_feature order(1284004..1284012,1284019..1284021,1284166..1284177, 1284253..1284255,1284295..1284297) /gene="folB" /locus_tag="AGROH133_05805" /note="active site" /db_xref="CDD:29762" gene 1284338..1284838 /gene="folK" /locus_tag="AGROH133_05806" /db_xref="GeneID:10267039" CDS 1284338..1284838 /gene="folK" /locus_tag="AGROH133_05806" /EC_number="2.7.6.3" /note="7, 8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK" /codon_start=1 /transl_table=11 /product="7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase" /protein_id="YP_004278577.1" /db_xref="GI:325292713" /db_xref="GeneID:10267039" /translation="MGLGGNIGDPAAAMARALRELDAHGDCRVLSVSGLYRTPPWGKT DQADFFNCCALVETSLSAPALLQLCLDIEKGMKRVRTERWGPRTIDIDVLTYGNDVVV TESIEVPHPRMTERAFVLMPLADIAPDLEVRGKPVREWLRQADKTGIISANEKREWWT LPLGDG" misc_feature 1284341..1284715 /gene="folK" /locus_tag="AGROH133_05806" /note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483" /db_xref="CDD:29601" misc_feature order(1284347..1284349,1284449..1284454,1284458..1284460, 1284482..1284484,1284488..1284490,1284533..1284535, 1284545..1284547,1284554..1284556,1284569..1284571, 1284575..1284577,1284587..1284589,1284596..1284598, 1284605..1284607,1284611..1284616,1284656..1284658, 1284665..1284670,1284683..1284685,1284689..1284691) /gene="folK" /locus_tag="AGROH133_05806" /note="catalytic center binding site [active]" /db_xref="CDD:29601" misc_feature order(1284533..1284535,1284545..1284547,1284554..1284556, 1284569..1284571,1284575..1284577,1284596..1284598, 1284611..1284616,1284656..1284658,1284665..1284670, 1284683..1284685) /gene="folK" /locus_tag="AGROH133_05806" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29601" gene complement(1284853..1285413) /locus_tag="AGROH133_05807" /db_xref="GeneID:10267040" CDS complement(1284853..1285413) /locus_tag="AGROH133_05807" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278578.1" /db_xref="GI:325292714" /db_xref="GeneID:10267040" /translation="MYSRFFSLVGGLAAILSVSGSFGLSDVHAASRDRDDVFFRSVAG SWKGPGEIVAGKYKGTKFTCDLTGEALDDKQTGIKLAGTCRVGVFSQPMSAVISQKGG SYEGKFLDGAEGKGLDIISGQVSGDKVVVGINRAKLNGAMVARVSNDNSMNITISVKV ADQMIPVIGVTLARDIDQIAVGSIKP" gene complement(1285543..1286622) /locus_tag="AGROH133_05809" /db_xref="GeneID:10267041" CDS complement(1285543..1286622) /locus_tag="AGROH133_05809" /note="Family of unknown function (DUF697); Predicted membrane protein" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_004278579.1" /db_xref="GI:325292715" /db_xref="GeneID:10267041" /translation="MKAPTPNDPQTRRPAAFTLETEETARPTVAQKRAPRSFDTEISL TPDEDDPFLAPEETDAAALPVAVPKKSRFSFGKLALSALGVLFSLAFGLWADQLIRNL FSRSDWLGYAASIALLVALFAVLVLVGREVFGIMRLNAVQSLKADAETASLDKSPKPA RAIVTRLNAVLSHRAETAKGRAALKDTENDVIDGPHLIELAERELLVPLDRQARALIL NSSKRVSVVTAVSPRAVVDLAYVLFEVTRLVRAMAELYGGRPGTLGMLRLLRDVVAHL AVTGSIAVGDGLAQQVLGHGLASKLSARLGEGVINGLMTARIGIAAMDLCRPLPFKAV KRPGIGDFMSDLTPDLGGGKTGQKA" misc_feature complement(1285546..1286601) /locus_tag="AGROH133_05809" /note="Predicted membrane protein [Function unknown]; Region: COG3768" /db_xref="CDD:33563" misc_feature complement(1285573..1286436) /locus_tag="AGROH133_05809" /note="Domain of unknown function (DUF697); Region: DUF697; cl12064" /db_xref="CDD:159724" gene complement(1286619..1288097) /locus_tag="AGROH133_05812" /db_xref="GeneID:10267042" CDS complement(1286619..1288097) /locus_tag="AGROH133_05812" /note="Protein of unknown function DUF463, YcjX-like protein; Predicted ATPase" /codon_start=1 /transl_table=11 /product="amino acid regulated cytosolic protein" /protein_id="YP_004278580.1" /db_xref="GI:325292716" /db_xref="GeneID:10267042" /translation="MPPSLTSLTDSALIAFDNLADRASTLTHPTLRLGVTGLSRAGKT VFISSLVHNLLNGGRLPLFEAMRSGRVSNVRLEPQPDDAIPRFQYEDHIQALVRDRLW PDSTRAISELRITLDYQSASGWGRWFSAGKLSIDIVDYPGEWLLDLPLLSQDYKSFSD STVALAQNGIRAELAQEWLAIASWLDINAPADEMTARRLAESFAAYLKACKSDERSLS TLPPGRLLMPGDLEGSPALTFAPLPGLTDDKAPKGSLRAMMERRYDAYKAIVVKPFFR EHFARLDRQIVLIDTLQAVNRGPEAVQDLERALGDVLACFRPGTNSLLSSLLGRRIDK VLIAATKADHLHHESHDRLERLTRRLVDRAITTIGMNGAGIEVMALASVRATREASVR QNGHELPVIVGTPMAGETINGEIFDGNRKTAIFPGDLPEDPEPLFRSIDRDGDKATLP DVNVVRFRPPNIDEPGSGGIRLSVPHIRLDRAMQFLFGDKLA" misc_feature complement(1286625..1288007) /locus_tag="AGROH133_05812" /note="YcjX-like family, DUF463; Region: DUF463; cl01193" /db_xref="CDD:154257" gene complement(1288229..1288798) /gene="sixA" /locus_tag="AGROH133_05813" /db_xref="GeneID:10267043" CDS complement(1288229..1288798) /gene="sixA" /locus_tag="AGROH133_05813" /EC_number="3.1.3.-" /note="Phosphoglycerate mutase family; Phosphohistidine phosphatase SixA" /codon_start=1 /transl_table=11 /product="phosphohistidine phosphatase" /protein_id="YP_004278581.1" /db_xref="GI:325292717" /db_xref="GeneID:10267043" /translation="MQPYPVAFLHCLPFERRSPPLTASSPSRVYLLRHAKAAWAAPGE RDFDRGLNEAGFAEAEIIADLAADRRYRPDVLLSSTATRCRQTTQAWQRAFNEGIDIV YIDEMYNARSETYLSLIAAQTDAQSVMLVGHNPTMEATLEAMIGEDLLHAALPSGFPT SGLAVLDHDDSAGNGKNRWRLVDFLSPGK" misc_feature complement(1288256..1288717) /gene="sixA" /locus_tag="AGROH133_05813" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature complement(order(1288397..1288402,1288550..1288552, 1288697..1288702)) /gene="sixA" /locus_tag="AGROH133_05813" /note="catalytic core [active]" /db_xref="CDD:132718" gene 1289007..1289426 /gene="dksA" /locus_tag="AGROH133_05814" /db_xref="GeneID:10267044" CDS 1289007..1289426 /gene="dksA" /locus_tag="AGROH133_05814" /note="RNA polymerase-binding, DksA, Prokaryotic dksA/traR C4-type zinc finger" /codon_start=1 /transl_table=11 /product="DnaK suppressor protein" /protein_id="YP_004278582.1" /db_xref="GI:325292718" /db_xref="GeneID:10267044" /translation="MSEKIDLSKYVLSEDDEFMNANQRAYFRAKLVAWRNDILREARE TLGHLAEESANHPDLADRASSETDRAIELRARDRQRKLISKIDSALQRIDDGTYGYCE ETGEPIGLKRLDARPIATLSIEAQERHERREKVYRDE" misc_feature 1289061..1289390 /gene="dksA" /locus_tag="AGROH133_05814" /note="Prokaryotic dksA/traR C4-type zinc finger; Region: zf-dskA_traR; cl00755" /db_xref="CDD:193930" gene complement(1289555..1290784) /locus_tag="AGROH133_05815" /db_xref="GeneID:10267045" CDS complement(1289555..1290784) /locus_tag="AGROH133_05815" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278583.1" /db_xref="GI:325292719" /db_xref="GeneID:10267045" /translation="MMEDFIGTYGNNLIVAVVGVGLALLVLAIVLWILRRRGGAAPFI RGGRNRQPRLQVLDATAVDARRRLVLVRRDNVEHLVMIGGPTDIVIESGIGAIPIVRE VREPQEAELKALPRQDSEPKRAEPPTPRESRPALPQQPIAAASPASLPEEPVKQPQRP EPPAPAARPAPTPAPAASLPPRPSTPPQPVSTPTTAREPVAPIRPAAPERDATRPAPP PASVIAAPAAAVLPLAAASLDMPAERPEQRRPDPFAPAPLPSAPPAPPVQATVPEERP TVVAPPVFAAREPVIDQTNAADFLDAARERVLPGLKPGQDAPAPFAPKPENPPVVSAN AEPKFSDDLASDFESFLEAEIAKSKDADSEQAVAAAAEKPKTEPVSPPVTGATPDGDM QKEMARIFGELSVTRDR" gene 1291026..1291313 /locus_tag="AGROH133_05817" /db_xref="GeneID:10267046" CDS 1291026..1291313 /locus_tag="AGROH133_05817" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278584.1" /db_xref="GI:325292720" /db_xref="GeneID:10267046" /translation="MLAKLLVDGFQVRVFIFVVLFGLPGSVFPAQAATADDKASENPA NMIEFVRDNPSCIDFTDGCSVCTVADGNIVCSAPRIQCQVKALTCSRKIGF" gene 1291479..1294067 /locus_tag="AGROH133_05820" /db_xref="GeneID:10267047" CDS 1291479..1294067 /locus_tag="AGROH133_05820" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; FOG: PAS/PAC domain" /codon_start=1 /transl_table=11 /product="sensory box histidine kinase/response regulator" /protein_id="YP_004278585.1" /db_xref="GI:325292721" /db_xref="GeneID:10267047" /translation="MTRVRETSDNDLPLVDRRARSGTVLRILLLALVLIAAAAAFVYF KDSLENEIVLGILGVLAMMGIFFLVSSIIGFIEVMPQSQSDGLARRFLSAHPDGTLIT DAKGHMVYANATYCRMSGTTKASDIQSLETLLSRSRESTEALYRLINVLREGRDGYEE FRLLKPLGEATSGGPHWYRLKGRVLKDAGGEALHVFQIADITPEREDQERFFRELQNA IDYLDHAPAGFFSAGRKGEIVYLNATLSEWLGIDLAQFSPGSMTVSDIVAGEGMALIE SVHPQGSAKRTEILDLDMRRVNGQSMPARLVHQVTSKDGAPGESRTIVLMRPKGQEDT ESSSAMRFTRFFNNTPMAIASLDGEGRILRINAPFLKLFSGVVGRDDIDRGVALEAII HDNEKPRLEQALAEAKDRQGDIAPFDSRHPSDEGRHFRFYVNAVIDQDDEAPEEVAIV YAIEVTEQKALETQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADP SFADLMEIKRNANRAAVLVRQLLAFSRKQTMRPAILNLTDVIGDLRMLVDRLISGTNV KLEVDYGRDLWPVKTDLSQFEQVLINLCVNARDAMPDGGKITIRTRNVDADEAAALGR PEVPAEDMVMVEVADNGTGIPPEIMDKIFEPFFTTKDVGKGTGLGLSMVYGIVKQSGG YIYPESEVGKGTAFRIYLPRHVVEVVHVPGQQPGEAALAPVALPEPVKEEPLDLTGNS AVVLLVEDEEAVRRGGKRMLETRGYTVHEAGSGVEALEVMEELEGKVDIVVSDVVMPE MDGPSLLRELRKSYPDLKFIFVSGYAEDAFAKNLPADAKFGFLPKPFSLKQLAIAVRE MLDNKE" misc_feature 1291764..1292111 /locus_tag="AGROH133_05820" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 1292562..1293596 /locus_tag="AGROH133_05820" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature 1292889..1293083 /locus_tag="AGROH133_05820" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1292907..1292909,1292919..1292921,1292931..1292933, 1292940..1292942,1292952..1292954,1292961..1292963, 1293012..1293014,1293024..1293026,1293033..1293035, 1293045..1293047,1293054..1293056,1293066..1293068) /locus_tag="AGROH133_05820" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1292925..1292927 /locus_tag="AGROH133_05820" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1293234..1293578 /locus_tag="AGROH133_05820" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1293252..1293254,1293264..1293266,1293273..1293275, 1293387..1293389,1293393..1293395,1293399..1293401, 1293405..1293410,1293477..1293488,1293534..1293536, 1293540..1293542,1293555..1293560,1293564..1293566) /locus_tag="AGROH133_05820" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1293264..1293266 /locus_tag="AGROH133_05820" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1293399..1293401,1293405..1293407,1293477..1293479, 1293483..1293485) /locus_tag="AGROH133_05820" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 1293735..1294052 /locus_tag="AGROH133_05820" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature 1293735..1294043 /locus_tag="AGROH133_05820" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature order(1293855..1293857,1293879..1293881,1293939..1293941, 1293996..1293998,1294005..1294010) /locus_tag="AGROH133_05820" /note="active site" /db_xref="CDD:29071" misc_feature 1293855..1293857 /locus_tag="AGROH133_05820" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1293864..1293869,1293873..1293881) /locus_tag="AGROH133_05820" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1294005..1294013 /locus_tag="AGROH133_05820" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 1294064..1294240 /locus_tag="AGROH133_05823" /db_xref="GeneID:10267048" CDS 1294064..1294240 /locus_tag="AGROH133_05823" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278586.1" /db_xref="GI:325292722" /db_xref="GeneID:10267048" /translation="MTADGAGVRLGPLLLAIPLQALGVKAETTAGKADSTALSRSAIA SPLFFPRFASSQTQ" gene 1294361..1294714 /gene="clpS" /locus_tag="AGROH133_05824" /db_xref="GeneID:10267049" CDS 1294361..1294714 /gene="clpS" /locus_tag="AGROH133_05824" /note="involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease adapter protein clpS 1" /protein_id="YP_004278587.1" /db_xref="GI:325292723" /db_xref="GeneID:10267049" /translation="MIAEPICMQGEGDGEDGGTNRGTSVITRVKPKTKRPNLYRVLLL NDDYTPMEFVIHILERFFQKDREAATRIMLHVHQHGVGECGVFTYEVAETKVSQVMDF ARQHQHPLQCVMEKK" misc_feature 1294397..1294711 /gene="clpS" /locus_tag="AGROH133_05824" /note="ATP-dependent Clp protease adaptor protein ClpS; Region: ClpS; cl00933" /db_xref="CDD:186267" gene 1294725..1297241 /gene="clpA" /locus_tag="AGROH133_05825" /db_xref="GeneID:10267050" CDS 1294725..1297241 /gene="clpA" /locus_tag="AGROH133_05825" /EC_number="3.4.21.92" /note="ATPases with chaperone activity, ATP-binding subunit" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease, ATP-binding subunit ClpA" /protein_id="YP_004278588.1" /db_xref="GI:325292724" /db_xref="GeneID:10267050" /translation="MPTFSPSLEKALHQALTFANERHHEYATLEHLLLALIDDADAAA VMGACNVDLDALRKTVSDYVDNELTNLVTGYDEDSKPTSGFQRVIQRAVIHVQSSGRE EVTGANVLVAIFAERESHAAYFLQEQEMTRYDAVNYISHGIGKRPGTSQTRAPRGADE PEADPKAARSNPEEEGSSAKKQQDALKAYCVNLNEKAKNGKIDPLIGRHEEVNRTIQI LCRRSKNNPLYVGDPGVGKTAIAEGLAKRIVEGKVPEALANDTIFSLDMGTLLAGTRY RGDFEERLKQVVKELEEYPGAVLFIDEIHTVIGAGATSGGAMDASNLLKPALSSGAIR CIGSTTYKEYRQFFEKDRALVRRFQKIDVNEPSIDDAIAIMKGLKPYFEDYHHLRYSN EAIKAAVELSARYISDRKLPDKAIDVIDETGAAQMLLPASKRRKLITEREIEATIATM ARIPPKTVSKDDEMVLANLEKELRSVVYGQDIAIEALATAIKLARAGLREPNKPIGSY VFSGPTGVGKTEVAKQLAASLGVEMLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLL TDGVDQHPHSVVLLDEIEKAHPDIYNILLQVMDHGSLTDHNGKKIDFRNVILIMTTNA GASEMAKSAIGFGSSRRTGEDEEAINRLFTPEFRNRLDAIIPFSPLPTAVIHKVVQKF VMQLETQLSERNVTFDLHEDAISWLAEKGYDEKMGARPLSRVIQEHIKKPLANEILFG KLKKGGVVSVTVGKKDDGSDGLKLEVLPETAPVKPKPEAELNAAKSPGKASKAKAKPA SKAAIANEEADVLVAEASKPDEESKPRRKANTVPKVPKKK" misc_feature 1294734..1296941 /gene="clpA" /locus_tag="AGROH133_05825" /note="ATP-dependent Clp protease ATP-binding subunit clpA; Region: ClpA; TIGR02639" /db_xref="CDD:188238" misc_feature 1295340..1295807 /gene="clpA" /locus_tag="AGROH133_05825" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1295415..1295438 /gene="clpA" /locus_tag="AGROH133_05825" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1295418..1295441,1295628..1295630,1295742..1295744) /gene="clpA" /locus_tag="AGROH133_05825" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1295616..1295633 /gene="clpA" /locus_tag="AGROH133_05825" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1295793..1295795 /gene="clpA" /locus_tag="AGROH133_05825" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1296156..1296593 /gene="clpA" /locus_tag="AGROH133_05825" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1296258..1296281 /gene="clpA" /locus_tag="AGROH133_05825" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1296261..1296284,1296465..1296467,1296591..1296593) /gene="clpA" /locus_tag="AGROH133_05825" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1296453..1296470 /gene="clpA" /locus_tag="AGROH133_05825" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1296732..>1296941 /gene="clpA" /locus_tag="AGROH133_05825" /note="C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431" /db_xref="CDD:192583" gene 1297400..1298158 /locus_tag="AGROH133_05826" /db_xref="GeneID:10267051" CDS 1297400..1298158 /locus_tag="AGROH133_05826" /note="AzlC-like; Predicted branched-chain amino acid permease (azaleucine resistance)" /codon_start=1 /transl_table=11 /product="AzlC family protein" /protein_id="YP_004278589.1" /db_xref="GI:325292725" /db_xref="GeneID:10267051" /translation="MQSADSDTIPLRGWFFRGMRGIFSLPSLILMTSFVGFSAFALES GVQRGEAVFMTLVIWALPAKMILIGSMVGGANLAACFLAVTLSSVRMMPMVASIVPEM RGAKTPTWILLFLSHFVAITAWVFATQNLSKIPREARAAWFAGFGITLTVVNAIIVGL CYGVVAAFPPLVAGVLFFLTPVYFIASIWATARHSVVKVAFIIGVIAGPVFAVIAPEF DILYAGIGGGTVAYLIDRFVFRRKIIPVSPESEP" misc_feature 1297478..1297894 /locus_tag="AGROH133_05826" /note="AzlC protein; Region: AzlC; cl00570" /db_xref="CDD:193874" gene 1298155..1298499 /locus_tag="AGROH133_05835" /db_xref="GeneID:10267052" CDS 1298155..1298499 /locus_tag="AGROH133_05835" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278590.1" /db_xref="GI:325292726" /db_xref="GeneID:10267052" /translation="MMTEQWWAPYLFIAIAGWLATDLWRWLGVLAGNRLKEDSEALYW VRAVATALVMAVTAKLIVFPTGTLEASPLWLRIGAAALGFTAFLAAGQRVIVGVAVPI ALLAAGLFVLGF" gene 1298568..1299518 /locus_tag="AGROH133_05840" /db_xref="GeneID:10267053" CDS 1298568..1299518 /locus_tag="AGROH133_05840" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278591.1" /db_xref="GI:325292727" /db_xref="GeneID:10267053" /translation="MKLFIAERFVLNVIFILFIVDVALIMTKGIEVDYTGYSLCLVAG TGVFLLGQFYRISERDLRIAAALVSAGLFILFSLAGSVFNYMFLPVQFPAIDPLLLSV DAALGYNWRDVVIWAATQPWIGKTLFFVYATSLPQLLLIVIMLGFTGKDRMLHHFLVT GVLGALASIVFWIFFPTYGAKAYLDLPQWVTETIPMAVDPAYGQELMRLGQEGVSYLT PKNVLGLIGFPSFHIFMAAMSVWFVPRHWLVMAVILPLNLLMLPAVLVQGGHHLSDIF GGLFAFVIVCAASSRLLNWLSAKERAGKAAAVPAQVFAAE" gene 1299796..1300746 /locus_tag="AGROH133_05849" /db_xref="GeneID:10267054" CDS 1299796..1300746 /locus_tag="AGROH133_05849" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278592.1" /db_xref="GI:325292728" /db_xref="GeneID:10267054" /translation="MRLFAAERFVLGFITILFVIDTVLIAVKGIAVDYAGYLLCGSMG AGVFILGQFYRKSGRDLRIAAALIAGGLFILFTLVASVFNYMFLPVAFPAIDHVLFRV DAAFGYSWMGIVTWAATHPWIGTILFFVYATSLPQLLVIVITLGFTGKERMLHHFLVT GVLGAFASIIFWIFFPSFGPSAYVQLPQWVSQTIPLAVDNAYGQELNRLITEGVVHLS PKNVLGLIGFPSFHILMAAMSVWFVPRHWLVMAVILPINILMLPAVLVQGGHHLSDIF GGLVAFAIVCAASSWLLKWLSVRERNGEKARASTQVIAAE" gene complement(1300725..1301615) /locus_tag="AGROH133_05859" /db_xref="GeneID:10267055" CDS complement(1300725..1301615) /locus_tag="AGROH133_05859" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004278593.1" /db_xref="GI:325292729" /db_xref="GeneID:10267055" /translation="MKLPPLATLRAFEAAARRTSFSLAAQELGMTATAVSQHVRNLET WLGAPLFERHARGVRLTPAGQEFGMTVSSGLGQIASGAERISRGRDRITVRLASLPSV VAHFLTPRLPRFRALYPDIQVSISYSGRNETTQPDLSITHGPRPAQKAVALFSAETRP TCTPAYATKSGPFDDVASLLRAELLHDATETAWRDWLATAGLSLFQGTGPIFADFNLL VTALKAGHGIGLCPTALLRDEIADGQLTVLFDRAADADKYYWLIEAEEMTASARLLSD WLVAEARESGNRSNYSAAMT" misc_feature complement(1300764..1301612) /locus_tag="AGROH133_05859" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(1301421..1301600) /locus_tag="AGROH133_05859" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1300782..1301339) /locus_tag="AGROH133_05859" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(1300944..1300949,1300953..1300958, 1300974..1300991,1301235..1301255,1301259..1301261, 1301271..1301273,1301280..1301285,1301289..1301294)) /locus_tag="AGROH133_05859" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 1301726..1302580 /locus_tag="AGROH133_05861" /db_xref="GeneID:10267056" CDS 1301726..1302580 /locus_tag="AGROH133_05861" /note="Domain of unknown function (DUF1989); Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278594.1" /db_xref="GI:325292730" /db_xref="GeneID:10267056" /translation="MTPVSAAEPIDAAARRAVRPVVVYPNGTLQTPDLARLEQAKKAM VKIDEVIVPPREGGTFNVPKGHFFRIVSTEGPQVGDLNLWNAHDLTERFFSGKTRALH ATHVSVGNRLWSNLPSLRPMATITHDTLSWYGWDEDGGGVHDVIGTRCDPYTNKLLSG GDYHHCCHSNLTNALAAAKGLSFGEAEPHVHDVLNVFMCTGFTRDKHQYFMKASPVRP GDYLELFAEIDLIGALSACPGGDCGASHSSDAVPCYPLKVEIFRPDMAVLEGWPWPER NAYRPVEC" misc_feature 1301726..1302559 /locus_tag="AGROH133_05861" /note="Domain of unknown function (DUF1989); Region: DUF1989; cl01474" /db_xref="CDD:194143" gene complement(1302754..1303185) /locus_tag="AGROH133_05862" /db_xref="GeneID:10267057" CDS complement(1302754..1303185) /locus_tag="AGROH133_05862" /note="Histidine triad-like motif; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases" /codon_start=1 /transl_table=11 /product="HIT family protein" /protein_id="YP_004278595.1" /db_xref="GI:325292731" /db_xref="GeneID:10267057" /translation="MTASAYDANNIFAKILRGEIPSHKLYEDEHTLAFMDVMPQAPGH LLVVPKTGSRNLLDADPQVLAKTIAVVQKLAVAAKEAFEADGVFVAQFNEPAAGQTVF HLHFHVIPRKEGEPLKPHSGTMADGEVLKAHAEKIKAALAS" misc_feature complement(1302853..1303161) /locus_tag="AGROH133_05862" /note="HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life...; Region: HINT_subgroup; cd01277" /db_xref="CDD:29590" misc_feature complement(order(1302859..1302867,1302871..1302873, 1302877..1302879)) /locus_tag="AGROH133_05862" /note="HIT family signature motif; other site" /db_xref="CDD:29590" misc_feature complement(1302871..1302873) /locus_tag="AGROH133_05862" /note="catalytic residue [active]" /db_xref="CDD:29590" gene complement(1303312..1304511) /locus_tag="AGROH133_05863" /db_xref="GeneID:10267058" CDS complement(1303312..1304511) /locus_tag="AGROH133_05863" /note="Protein of unknown function DUF482; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278596.1" /db_xref="GI:325292732" /db_xref="GeneID:10267058" /translation="MTEDYSIRVAQSLRDIDPDSWKRLSGTSRNVSGKPYNPFISHAF LSSMEDSGSATAKTGWLGHHLLLENGSGELVGAVPAYLKNHSKGEYVFDHGWADAFER AGGHYYPKLQCSVPFTPASGPRLLVSETEDETRFKPLLASGLVQVTEKIGVSSAHVTF LEDADLSALLPRDFLHRTDQQFHFINDGYRDHNDFLDALSSRKRKGLKKERRAALENG IEIDWLTGSDLTEEIWDQFFAFYMDTGSRKWGRPYLTREFYSLIGERMPDDVLLVMAR REGRYIAGAINFIGSDALYGRHWGCIEDHPFLHFEVCYHQAIDFALSKGLKRVEAGAQ GEHKLARGYVPVTTHSAHFIVHPGLRRAIADYLQREREEVEHIGDYLEDHTPFRKGER QEHEPDT" misc_feature complement(1303339..1304511) /locus_tag="AGROH133_05863" /note="FemAB family; Region: FemAB; cl11444" /db_xref="CDD:196237" misc_feature complement(1303345..1304478) /locus_tag="AGROH133_05863" /note="Protein of unknown function, DUF482; Region: DUF482; pfam04339" /db_xref="CDD:146791" gene complement(1304508..1305248) /locus_tag="AGROH133_05864" /db_xref="GeneID:10267059" CDS complement(1304508..1305248) /locus_tag="AGROH133_05864" /EC_number="3.1.4.46" /note="glycerophosphoryl diester phosphodiesterase family" /codon_start=1 /transl_table=11 /product="glycerophosphoryl diester phosphodiesterase" /protein_id="YP_004278597.1" /db_xref="GI:325292733" /db_xref="GeneID:10267059" /translation="MTLKLSWLTAQPVAHRGYHDLNKVVWENTLSAFSRAIDAGFAIE CDVQLAADSVPVIFHDDDMARLTGIKGDVREHTASELSLLSVGQTKDRIPTLKQLLAL CAGKVPLVIELKGRQGEGVDDGFAEAVLEDLEGYKGQVALMSFDHHLLRDLKAAGSPW PLGLTAEGAKPEDFFKHDEAMQIGVDFISYHWGHLPNSFIEAQRKLGLPVITWTVRDE NARETTYKYADQMTFEGFDPRENPSATA" misc_feature complement(1304544..1305230) /locus_tag="AGROH133_05864" /note="Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases; Region: GDPD_like_3; cd08585" /db_xref="CDD:176527" misc_feature complement(1304595..1305206) /locus_tag="AGROH133_05864" /note="Glycerophosphoryl diester phosphodiesterase family; Region: GDPD; pfam03009" /db_xref="CDD:145909" misc_feature complement(order(1304610..1304612,1304820..1304822, 1304913..1304915,1305072..1305074,1305111..1305113, 1305117..1305119,1305204..1305206)) /locus_tag="AGROH133_05864" /note="putative active site [active]" /db_xref="CDD:176527" misc_feature complement(order(1305072..1305074,1305204..1305206)) /locus_tag="AGROH133_05864" /note="catalytic site [active]" /db_xref="CDD:176527" misc_feature complement(order(1304913..1304915,1305111..1305113, 1305117..1305119)) /locus_tag="AGROH133_05864" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176527" gene complement(1305245..1305715) /locus_tag="AGROH133_05865" /db_xref="GeneID:10267060" CDS complement(1305245..1305715) /locus_tag="AGROH133_05865" /note="Endoribonuclease L-PSP/chorismate mutase-like; Putative translation initiation inhibitor, yjgF family" /codon_start=1 /transl_table=11 /product="translation initiation inhibitor protein" /protein_id="YP_004278598.1" /db_xref="GI:325292734" /db_xref="GeneID:10267060" /translation="MSDVIEGRLKELGFTLPVAAAPAANYVPFTISGNLLYVSGQLPM ESGKIAVTGLVGRDVDVATAQRAAELCAVNILAQVKAALNGDLSKIRRILKLNGFVAS VPEFVEQHLVINGASNLLANVLGDAGKHARAAVGMACLPFNAAVEIDAIVEIDV" misc_feature complement(1305257..1305685) /locus_tag="AGROH133_05865" /note="This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_1; cd02199" /db_xref="CDD:100006" misc_feature complement(order(1305263..1305265,1305269..1305271, 1305275..1305277,1305305..1305331,1305353..1305355, 1305365..1305367,1305374..1305376,1305419..1305421, 1305425..1305427,1305431..1305436,1305440..1305442, 1305596..1305601,1305605..1305607,1305611..1305613, 1305620..1305622,1305626..1305628,1305635..1305640)) /locus_tag="AGROH133_05865" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100006" misc_feature complement(order(1305275..1305277,1305320..1305322, 1305374..1305376,1305386..1305388,1305638..1305640)) /locus_tag="AGROH133_05865" /note="putative active site [active]" /db_xref="CDD:100006" gene 1305832..1306674 /locus_tag="AGROH133_05866" /db_xref="GeneID:10267061" CDS 1305832..1306674 /locus_tag="AGROH133_05866" /note="Protein of unknown function DUF1849" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278599.1" /db_xref="GI:325292735" /db_xref="GeneID:10267061" /translation="MFVRTLGFVAATGLMTGLSNGANALPVTVPDLIAHRAVYDLELK DATDRSGIEGMTGRMVYEFTGSACQGYKTDFRFVTQINTGDAVRMTDQQTTTFEDLAA KKFTFETKSYTDDKLDKEVQGAAIDNKEGVKVDLTRPDPRQIDLVASEFPTEHMFQVI ENAKQGKRIFESRIFDGSDDGDESLITSTLVGKAQMPKDGDAEAGKAGEFGKAAFWPV TIAYYNDKTGTDALPIYRMSFKLYDNGITRDLTMDYGDFVLTGKLAKLDILKPETCEN KPVR" misc_feature 1305895..1306647 /locus_tag="AGROH133_05866" /note="Domain of unknown function (DUF1849); Region: DUF1849; pfam08904" /db_xref="CDD:149842" gene 1306736..1306861 /locus_tag="AGROH133_05868" /db_xref="GeneID:10267062" CDS 1306736..1306861 /locus_tag="AGROH133_05868" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278600.1" /db_xref="GI:325292736" /db_xref="GeneID:10267062" /translation="MRLTIPHAKLGMFREKSGPFRPVVSMKIGAVRFAGVKPEKE" gene 1306868..1307635 /gene="rpsB" /locus_tag="AGROH133_05869" /db_xref="GeneID:10267063" CDS 1306868..1307635 /gene="rpsB" /locus_tag="AGROH133_05869" /note="one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; Ribosomal protein S2" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S2" /protein_id="YP_004278601.1" /db_xref="GI:325292737" /db_xref="GeneID:10267063" /translation="MALPDFSMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIID LAQTVPMLSRALQVVSDTVARGGRVLFVGTKRQASEIIADSAKRSAQYYVNSRWLGGM MTNWKTISNSIQRLRKVDEILNSEGTGYSKKERLTLEREREKLEKALGGIRDMGGVPD LMFIIDTNKEKIAIEEAKRLGIPVVAIIDSNCDPDHIDYPIPGNDDASRAISLYCDLI ARAAIDGILRQQGSSGRDIGASEEAPIEPALEDEAGA" misc_feature 1306898..1307530 /gene="rpsB" /locus_tag="AGROH133_05869" /note="Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425" /db_xref="CDD:100106" misc_feature order(1306946..1306951,1306976..1306984,1307156..1307158, 1307162..1307170,1307177..1307182,1307393..1307395, 1307402..1307404) /gene="rpsB" /locus_tag="AGROH133_05869" /note="rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:100106" misc_feature order(1307399..1307404,1307408..1307410,1307450..1307461) /gene="rpsB" /locus_tag="AGROH133_05869" /note="S8 interaction site; other site" /db_xref="CDD:100106" misc_feature 1307504..1307521 /gene="rpsB" /locus_tag="AGROH133_05869" /note="putative laminin-1 binding site; other site" /db_xref="CDD:100106" gene 1307998..1308924 /gene="tsf" /locus_tag="AGROH133_05870" /db_xref="GeneID:10267064" CDS 1307998..1308924 /gene="tsf" /locus_tag="AGROH133_05870" /note="EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; Translation elongation factor Ts" /codon_start=1 /transl_table=11 /product="Elongation factor Ts" /protein_id="YP_004278602.1" /db_xref="GI:325292738" /db_xref="GeneID:10267064" /translation="MTEITAAMVKELREKSGAGMMDCKKALAETNGDMEAAIDWLRAK GIAKADKKSGRTAAEGLIGVATMGHKAVVVELNSETDFVARNDAFQDLIRGIAQVALS TDGTVEAVSAATYPATGKSVSDSIKDAIATIGENMTLRRSAALEVEHGVVATYIHNAA GEGIGKLGVLVALKSVGDKAVLSSIGRQVAMHIAATNPLAIRAEEVDAAVAERERNVF IEQARESGKPEAIIEKMVDGRMRKFFEEVALLSQAFVINPDITVGAAVKEAEKEAGAA IEVTGMVRLLLGEGVEKEESDFAAEVAAVAKG" misc_feature 1307998..1308918 /gene="tsf" /locus_tag="AGROH133_05870" /note="elongation factor Ts; Provisional; Region: tsf; PRK09377" /db_xref="CDD:181810" misc_feature 1308007..1308120 /gene="tsf" /locus_tag="AGROH133_05870" /note="Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been...; Region: UBA; cl00153" /db_xref="CDD:193684" misc_feature 1308166..>1308297 /gene="tsf" /locus_tag="AGROH133_05870" /note="Elongation factor TS; Region: EF_TS; pfam00889" /db_xref="CDD:189759" misc_feature 1308442..1308864 /gene="tsf" /locus_tag="AGROH133_05870" /note="Elongation factor TS; Region: EF_TS; pfam00889" /db_xref="CDD:189759" gene 1309022..1309744 /gene="pyrH" /locus_tag="AGROH133_05871" /db_xref="GeneID:10267065" CDS 1309022..1309744 /gene="pyrH" /locus_tag="AGROH133_05871" /EC_number="2.7.4.-" /note="Catalyzes the phosphorylation of UMP to UDP" /codon_start=1 /transl_table=11 /product="Uridylate kinase" /protein_id="YP_004278603.1" /db_xref="GI:325292739" /db_xref="GeneID:10267065" /translation="MSSKPIYKRVLLKASGEALMGDQGFGIDVAVADRIASDIAEARA MGVEVGVVVGGGNIFRGVAVASKGGDRVTGDHMGMLATVINALALATSLRKLSIDTVV LSAIAMPEICESFSQRAALHHLAQGRVVIFAGGTGNPFFTTDSAAALRAAEMGAEAIF KGTQVDGIYSADPKKDPTATRFDELTHSEVLGKGLAVMDIAAVALARENHIPIIVFSI HEKGGFAQILTGGGRKTIVHDK" misc_feature 1309043..1309735 /gene="pyrH" /locus_tag="AGROH133_05871" /note="UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control...; Region: AAK_UMPK-PyrH-Ec; cd04254" /db_xref="CDD:58620" misc_feature order(1309058..1309060,1309067..1309072,1309181..1309189, 1309448..1309453,1309508..1309513,1309520..1309522, 1309526..1309528,1309532..1309537) /gene="pyrH" /locus_tag="AGROH133_05871" /note="putative nucleotide binding site [chemical binding]; other site" /db_xref="CDD:58620" misc_feature order(1309181..1309189,1309199..1309204,1309244..1309246, 1309253..1309258,1309427..1309429,1309433..1309438, 1309442..1309450) /gene="pyrH" /locus_tag="AGROH133_05871" /note="uridine monophosphate binding site [chemical binding]; other site" /db_xref="CDD:58620" misc_feature order(1309220..1309225,1309247..1309252,1309271..1309273, 1309292..1309294,1309322..1309324,1309364..1309366, 1309376..1309378,1309385..1309387,1309403..1309405, 1309427..1309429,1309433..1309441,1309466..1309468, 1309475..1309480,1309646..1309648) /gene="pyrH" /locus_tag="AGROH133_05871" /note="homohexameric interface [polypeptide binding]; other site" /db_xref="CDD:58620" gene 1309811..1310368 /gene="frr" /locus_tag="AGROH133_05872" /db_xref="GeneID:10267066" CDS 1309811..1310368 /gene="frr" /locus_tag="AGROH133_05872" /note="Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally" /codon_start=1 /transl_table=11 /product="Ribosome recycling factor" /protein_id="YP_004278604.1" /db_xref="GI:325292740" /db_xref="GeneID:10267066" /translation="MSGIDLNDIKRRMDGAINAFKSDIASLRTGRASANILDPVTIEA YGSRVPLNQVANITVPEPRMLGVNIWDKSMVNAVDRAIRESNLGLNPIVDGQNLRIPL PELNEERRKSLVKVAHDYAEKSKVAIRHVRRDGMDGLKKAEKDGDIGQDESRGQSEKV QKITDDTISEIERLLGEKEKEIMQV" misc_feature 1309826..1310359 /gene="frr" /locus_tag="AGROH133_05872" /note="Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are 'recycled' and ready for another round of...; Region: RRF; cd00520" /db_xref="CDD:29621" misc_feature order(1309895..1309906,1310114..1310125) /gene="frr" /locus_tag="AGROH133_05872" /note="hinge region; other site" /db_xref="CDD:29621" gene 1310433..1311176 /gene="uppS" /locus_tag="AGROH133_05873" /db_xref="GeneID:10267067" CDS 1310433..1311176 /gene="uppS" /locus_tag="AGROH133_05873" /EC_number="2.5.1.31" /codon_start=1 /transl_table=11 /product="Undecaprenyl pyrophosphate synthase" /protein_id="YP_004278605.1" /db_xref="GI:325292741" /db_xref="GeneID:10267067" /translation="MPTTTRSSIPEHVAIIMDGNGRWAKQRGLPRVMGHRRGVEAVRE TVRAAGDCGVRYLTLFAFSSENWRRPESEVSDLMGLLKAFIRRDLAELHRENVRVRII GDRQGLKNDIRSLLEEAEHMTADNTRLTLVIAFNYGSRDEIARATMAIARDVAEGRLD AESITPEIISARLDTSGIPDPDLIIRTSGEERLSNFLLWQAAYSEFLFVPEYWPDFDR QRFFSAIEQYATRDRRFGALAEQVAVAGA" misc_feature 1310460..1311119 /gene="uppS" /locus_tag="AGROH133_05873" /note="Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cd00475" /db_xref="CDD:29593" misc_feature 1310484..1310486 /gene="uppS" /locus_tag="AGROH133_05873" /note="catalytic residue [active]" /db_xref="CDD:29593" misc_feature 1310487..1310498 /gene="uppS" /locus_tag="AGROH133_05873" /note="putative FPP diphosphate binding site; other site" /db_xref="CDD:29593" misc_feature order(1310607..1310621,1310661..1310666,1310670..1310678, 1310757..1310759,1310778..1310780,1310823..1310825, 1310829..1310831) /gene="uppS" /locus_tag="AGROH133_05873" /note="putative FPP binding hydrophobic cleft; other site" /db_xref="CDD:29593" misc_feature order(1310850..1310852,1310874..1310876,1310886..1310888, 1310895..1310897,1310922..1310924,1311003..1311008, 1311015..1311017,1311027..1311029,1311036..1311038, 1311048..1311050) /gene="uppS" /locus_tag="AGROH133_05873" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29593" misc_feature order(1310988..1310990,1311006..1311008) /gene="uppS" /locus_tag="AGROH133_05873" /note="putative IPP diphosphate binding site; other site" /db_xref="CDD:29593" gene 1311176..1312009 /gene="cdsA" /locus_tag="AGROH133_05874" /db_xref="GeneID:10267068" CDS 1311176..1312009 /gene="cdsA" /locus_tag="AGROH133_05874" /EC_number="2.7.7.41" /note="CDP-diglyceride synthetase" /codon_start=1 /transl_table=11 /product="phosphatidate cytidylyltransferase" /protein_id="YP_004278606.1" /db_xref="GI:325292742" /db_xref="GeneID:10267068" /translation="MSRELRLRIISAIVMAAVILAATWYGGILFRIVAGLLAILIYYE WATITRMSETNSTGNAWGWFAVAVIAGNTIFGEPSLDLPLLSGFTLTAALFPVLRGRN WWLVGGIVYAGLSGISLAAIRGDELTGFVAILFIFAVVWSTDILAYFVGRAIGGPKLA PSISPGKTWSGAIGGAVAALIGGGAVSLAYHGRISLLLLGLALILSVFSQIGDLFESF VKRRFQVKDSSHLIPGHGGFMDRVDGLVFACFTVFLIAFVHAAATGDVPGSGGGLLPG F" misc_feature 1311185..1311946 /gene="cdsA" /locus_tag="AGROH133_05874" /note="Cytidylyltransferase family; Region: CTP_transf_1; cl00347" /db_xref="CDD:185926" gene 1312047..1313180 /locus_tag="AGROH133_05884" /db_xref="GeneID:10267069" CDS 1312047..1313180 /locus_tag="AGROH133_05884" /note="Peptidase M50, membrane-associated zinc metallopeptidase; Predicted membrane-associated Zn-dependent proteases 1" /codon_start=1 /transl_table=11 /product="hypothetical zinc metalloprotease" /protein_id="YP_004278607.1" /db_xref="GI:325292743" /db_xref="GeneID:10267069" /translation="MNTVMAATGFLTGYIVPFVLVLSLLVFVHEMGHYLVGRWSGIRS TAFSIGFGPELIGFTDRHGTRWKISAIPLGGYVKFFGDEDASSKPDSSGLSHMSLEER AQTLSGAKLWKRAATVAAGPIANFILAIFIFAVLFGVYGRMIADPVVAEVRENSAAAA AGVHPGDRLVAIDGEKVKTFEDVRRYVGIRPGTPITVTVERAGEELKLPMVPTRTETT DQFGNKLEMGIIGIVTDQNSGNFRHIEYSPSEALLEGVRETGHVITGTFNYIGNLVTG RMNADQLGGPVRVAQASGQMATLGISAVIQLAAVLSVSIGLLNLMPVPVLDGGHLVFY AIEAIRGRPLGAGAQEVAFRIGMAMILGLMVFATWNDISSLIG" misc_feature 1312131..1313177 /locus_tag="AGROH133_05884" /note="Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]; Region: COG0750" /db_xref="CDD:31093" misc_feature 1312131..>1312412 /locus_tag="AGROH133_05884" /note="RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163" /db_xref="CDD:100084" misc_feature order(1312131..1312136,1312143..1312145) /locus_tag="AGROH133_05884" /note="active site" /db_xref="CDD:100084" misc_feature 1312461..1312682 /locus_tag="AGROH133_05884" /note="PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most...; Region: PDZ_metalloprotease; cd00989" /db_xref="CDD:29046" misc_feature order(1312464..1312466,1312593..1312598,1312605..1312610) /locus_tag="AGROH133_05884" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29046" misc_feature <1312932..1313165 /locus_tag="AGROH133_05884" /note="RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163" /db_xref="CDD:100084" misc_feature 1313001..1313012 /locus_tag="AGROH133_05884" /note="putative substrate binding region [chemical binding]; other site" /db_xref="CDD:100084" gene 1313380..1315704 /gene="omp1" /locus_tag="AGROH133_05889" /db_xref="GeneID:10267070" CDS 1313380..1315704 /gene="omp1" /locus_tag="AGROH133_05889" /note="Bacterial surface antigen (D15), Surface antigen; Outer membrane protein/protective antigen OMA87" /codon_start=1 /transl_table=11 /product="group 1 outer membrane protein precursor" /protein_id="YP_004278608.1" /db_xref="GI:325292744" /db_xref="GeneID:10267070" /translation="MKAGSRFLNAVSAVALSAGVSSVAGLGVLASAGVANAAVISKID VRGAERSGADSVRSNITIAPGKNFSNSDIDESVKRLYATGYFSNVSMRVSGSTLVVTV NENQLVNQVVFNGNRKIKDDKLAGVVQTQPLGPFNQAIVTADIARIKEAYSAIGRSDV EITTQTVSVGQGRVNIAFVINEGERTKIGRIDFVGNNSYSDGRLAAVINTKKSNMLSF LTRKDVYNEDKLRADEEALRQFYYNRGYADFRVVSSDAVLDESKNEYTISITVDEGKK YDFGNVAVESTVPGIDGSELQGLVETRQGASYSAKEVQQSMEAISKRVAGEGYPFARV TPRGDRDMSGNTIGVTYIVDQGERAYVERIEIRGNTRTRDYVIRREFDISEGDAFNQT VITAAKRRLEALGYFSKVNVSTAGGSAPDRVVIVVDVEDQSTGSFGIGAGYSQNDGVL LEASIEEKNFLGRGQYIRLAAGAGEDDARSYTLSFTEPYFLGYRLAAGFDLFKSQSRS EDYYDYDEQGFALRVTAPITENLSTTFKYTYKQLNYDGEGDWETGSNLAEPYKALIRG GDWTQSIISNTLNYNTLDDRNMPREGWQAALTNEFAGLGGDSEYYKIYAKARFYYTLS DEYDVIGSLTGQAGHVVPTGDNLLVFDQFKFGGRQVRGFKNDGIGPRIGSDSIGGTTY FAASAEVTAPMPGVPEDFGLRLAGFVDAGTLYGNKVANSTGVKDDNSIRASAGIGVMW ASPFGPIRVDYAVPIAKEDYDEEQRFRFGMSNTF" misc_feature 1313497..1315701 /gene="omp1" /locus_tag="AGROH133_05889" /note="outer membrane protein assembly complex, YaeT protein; Region: OM_YaeT; TIGR03303" /db_xref="CDD:163210" misc_feature 1313497..1313694 /gene="omp1" /locus_tag="AGROH133_05889" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1313701..1313928 /gene="omp1" /locus_tag="AGROH133_05889" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1313938..1314201 /gene="omp1" /locus_tag="AGROH133_05889" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1314208..1314447 /gene="omp1" /locus_tag="AGROH133_05889" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1314454..1314669 /gene="omp1" /locus_tag="AGROH133_05889" /note="Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520" /db_xref="CDD:195983" misc_feature 1314754..1315701 /gene="omp1" /locus_tag="AGROH133_05889" /note="Surface antigen; Region: Bac_surface_Ag; cl03097" /db_xref="CDD:155280" gene 1315754..1316821 /gene="lpxD" /locus_tag="AGROH133_05892" /db_xref="GeneID:10267071" CDS 1315754..1316821 /gene="lpxD" /locus_tag="AGROH133_05892" /EC_number="2.3.1.-" /note="adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis" /codon_start=1 /transl_table=11 /product="UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase" /protein_id="YP_004278609.1" /db_xref="GI:325292745" /db_xref="GeneID:10267071" /translation="MEYNAFFPPHEGLRLKDIADRFGAELSDEAAGERIIRSVAPVYR AKPDQLCYILSRKNRDELPTCEAGAVICDAALADMLPSHIPALISKNPHTLFAQVGAL LHPAAMRPGTIVVMEAEVSHTAHVDPSAKLEAGVIVEPLAVIGAGAHIGAGTRIGPGV IIGADVQVGRDCTIAGGASILAALIGNNVIIHNGARIGQDGFGYAPGPRGMLKIVQIG RVIIQDNVEIGANTTIDRGTMDDTVIGEGTKIDNQVQIGHNVRIGRHCGIVSKVGIAG STRIGDGVMIGGAAGINGHITIGDGVQIAAMSGVVADVPAGARYGGTPARPMKYFLRD MADILARAEGRDKKTGEKNDD" misc_feature 1315787..1316818 /gene="lpxD" /locus_tag="AGROH133_05892" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional; Region: lpxD; PRK00892" /db_xref="CDD:179158" misc_feature 1315847..1316062 /gene="lpxD" /locus_tag="AGROH133_05892" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Region: LpxD; pfam04613" /db_xref="CDD:146990" misc_feature 1316138..1316749 /gene="lpxD" /locus_tag="AGROH133_05892" /note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-...; Region: LbH_LpxD; cd03352" /db_xref="CDD:100043" misc_feature order(1316174..1316176,1316186..1316191,1316243..1316245, 1316282..1316284,1316288..1316290,1316294..1316296, 1316327..1316329,1316333..1316335,1316351..1316353, 1316357..1316359,1316390..1316398,1316432..1316434, 1316444..1316446,1316450..1316452,1316456..1316458, 1316465..1316473,1316498..1316500,1316504..1316512, 1316516..1316518,1316528..1316530,1316546..1316548, 1316552..1316554,1316564..1316572,1316600..1316602, 1316618..1316626,1316636..1316638,1316672..1316680, 1316729..1316731,1316741..1316743) /gene="lpxD" /locus_tag="AGROH133_05892" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100043" misc_feature order(1316357..1316365,1316504..1316506,1316516..1316518, 1316525..1316530,1316558..1316563,1316576..1316584, 1316633..1316638,1316669..1316671) /gene="lpxD" /locus_tag="AGROH133_05892" /note="active site" /db_xref="CDD:100043" misc_feature order(1316357..1316365,1316525..1316530,1316579..1316584, 1316633..1316638) /gene="lpxD" /locus_tag="AGROH133_05892" /note="UDP-GlcNAc binding site [chemical binding]; other site" /db_xref="CDD:100043" misc_feature order(1316504..1316506,1316516..1316518,1316558..1316563, 1316576..1316578,1316669..1316671) /gene="lpxD" /locus_tag="AGROH133_05892" /note="lipid binding site [chemical binding]; lipid-binding site" /db_xref="CDD:100043" gene 1316814..1317281 /gene="fabZ" /locus_tag="AGROH133_05893" /db_xref="GeneID:10267072" CDS 1316814..1317281 /gene="fabZ" /locus_tag="AGROH133_05893" /EC_number="4.2.1.-" /note="in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases" /codon_start=1 /transl_table=11 /product="3R-hydroxymyristoyl-ACP dehydratase" /protein_id="YP_004278610.1" /db_xref="GI:325292746" /db_xref="GeneID:10267072" /translation="MTEETKTTLGAADILEVMKLLPHRYPFLLIDKIIEIDGNNSAIG IKNVTVNEPHFTGHFPDRPIMPGVLIVEAMAQTAGAICARSQGEGGYLVYFMTIDNAR FRRPVVPGDRLEIHVVKQRQRGNVFKFHCEAKVEGALVAEADVGAMMIPEDQQ" misc_feature 1316874..1317263 /gene="fabZ" /locus_tag="AGROH133_05893" /note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288" /db_xref="CDD:48033" gene 1317278..1318093 /gene="lpxA" /locus_tag="AGROH133_05894" /db_xref="GeneID:10267073" CDS 1317278..1318093 /gene="lpxA" /locus_tag="AGROH133_05894" /EC_number="2.3.1.129" /note="catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; Acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine acyltransferase" /protein_id="YP_004278611.1" /db_xref="GI:325292747" /db_xref="GeneID:10267073" /translation="MSTIAASAKIHPTAVVEDGAVIGENVVIGALSYVGAKVTLQDEV TLHNHAVVSGLTVIGRGSVIHPMAVIGGTPQAIRHDGSETTLEIGARCIMREGVTMNA GSSDGSGKTIVGDDNLFLANSHVAHDCRLGSHIILSNNVMLAGHVTIEDRAILGGGCA VHQFTRIGRQAFIGGLSAVNYDVIPYGMLNGNPGILGGLNVVGMTRSGIDRADIHKVR RVFKQIFEGEGAIRSNAAAIDRAEYLDCPQVIEILDFIGADSDRALSSPNRGK" misc_feature 1317293..1318084 /gene="lpxA" /locus_tag="AGROH133_05894" /note="UDP-N-acetylglucosamine acyltransferase; Provisional; Region: PRK05289" /db_xref="CDD:179994" misc_feature 1317302..1318069 /gene="lpxA" /locus_tag="AGROH133_05894" /note="UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A...; Region: LbH_UDP-GlcNAc_AT; cd03351" /db_xref="CDD:100042" misc_feature order(1317500..1317502,1317509..1317511,1317578..1317580, 1317647..1317649,1317656..1317658,1317713..1317715, 1317761..1317766,1317800..1317802,1317875..1317877, 1317893..1317898) /gene="lpxA" /locus_tag="AGROH133_05894" /note="active site" /db_xref="CDD:100042" gene 1318097..1318978 /locus_tag="AGROH133_05895" /db_xref="GeneID:10267074" CDS 1318097..1318978 /locus_tag="AGROH133_05895" /note="Protein of unknown function DUF1009; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278612.1" /db_xref="GI:325292748" /db_xref="GeneID:10267074" /translation="MTGGGRLAIVAGSGQLPLHVAAAAREMGENPFIVQLRDDSQFDW SGFDNAVISVGDVAGLGRLLRENQVDRVVLSGAVARRPEWREIRPTIGILLKLPSIVR TLLSSGDDAVLQMVIKVIGTLGAKVIGAHEIAPGLLATTGPFGAHKPAEDDLRDIRKA AQAALALGTLDVGQGAVAVGGRIVALEGVEGTDAMLARVAALRAEGRISTRRKGVLVK LCKPQQDIRADLPTIGVETVENAHKAGLAGIAVEAGRALVLDRDEMLKAADQAGIFVC GIDTSLGEDMMGGDMVG" misc_feature 1318097..1318939 /locus_tag="AGROH133_05895" /note="Protein of unknown function (DUF1009); Region: DUF1009; cl09182" /db_xref="CDD:158447" gene 1318975..1320156 /gene="lpxB" /locus_tag="AGROH133_05896" /db_xref="GeneID:10267075" CDS 1318975..1320156 /gene="lpxB" /locus_tag="AGROH133_05896" /EC_number="2.4.1.182" /note="catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; Lipid A disaccharide synthetase" /codon_start=1 /transl_table=11 /product="lipid-A-disaccharide synthase" /protein_id="YP_004278613.1" /db_xref="GI:325292749" /db_xref="GeneID:10267075" /translation="MTATLKVAVIAGEVSGDLLGADLIRSLKGHYSGSVELMGVGGEA LEAQGLVSLFDYSELSIMGFTQVLKKLPKLISRINQTAQAIIVAKPDILLIIDSPDFT HRVAKKVRKQLPHLPVVNYVCPSVWAWKEYRATAMLSYVDHVLALLPFEPEAMRRLGG PPTTFVGHRLSVDQDVLSARQRRAERPLPANGEPKTILLLPGSRSTETTRLMEPFQEA AKAYVERNGPTKFLLPTVPRQENRIRELAATWPQDIRPEIGIDPAFKWNAFARADAAI AASGTVILELALVGVPTISVYKTDWIFTMLSKRVKTWTGALPNLIADYVVVPEYFNEV VRAGSMLRWAERLSSDTTERRAMLEGYALVQERLHTEVPPGETGALILLDVLNSREQQ G" misc_feature 1318987..1320144 /gene="lpxB" /locus_tag="AGROH133_05896" /note="lipid-A-disaccharide synthase; Reviewed; Region: lpxB; PRK00025" /db_xref="CDD:178802" misc_feature 1319050..1320000 /gene="lpxB" /locus_tag="AGROH133_05896" /note="ipid-A-disaccharide synthase; Provisional; Region: PRK14089" /db_xref="CDD:184498" gene complement(1320287..1321576) /gene="gltA" /locus_tag="AGROH133_05897" /db_xref="GeneID:10267076" CDS complement(1320287..1321576) /gene="gltA" /locus_tag="AGROH133_05897" /EC_number="2.3.3.1" /note="type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; Citrate synthase" /codon_start=1 /transl_table=11 /product="type II citrate synthase" /protein_id="YP_004278614.1" /db_xref="GI:325292750" /db_xref="GeneID:10267076" /translation="MTEKSATVTLGEKQVELPVREGTIGPSVVDIATLYKHTGSFTYD PGFTSTASCESKITYIDGDEGVLLHRGFPIEQLAEQGDFLETCYLLLYGELPTAAQKK DFDTRVTRHTMVHEQMSRFFTGYRRDAHPMAVMCGTVGALSAFYHDSTDITDPHQRMV ASLRMIAKMPTIAAMAYKYHIGQPFVYPKNDLDYASNFLHMCFAVPCEEYKVDPVLAR AMDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNML NEIGTVDRIPEYIARAKDKNDPFRLMGFGHRVYKNYDPRAKIMQKTMYEVLEATGNSD DPIMQVALELEKIALSDPYFVEKKLYPNVDFYSGITLKALGFPTTMFTVLFALARTVG WIAQWNEMIEDPQQRIGRPRQLYTGAGKRDYVPVSKR" misc_feature complement(1320326..1321528) /gene="gltA" /locus_tag="AGROH133_05897" /note="Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS...; Region: EcCS_like; cd06114" /db_xref="CDD:99867" misc_feature complement(order(1320326..1320352,1320356..1320358, 1320653..1320658,1320770..1320775,1320779..1320796, 1320800..1320805,1320824..1320826,1320833..1320844, 1320851..1320853,1320863..1320868,1320875..1320889, 1321142..1321150,1321157..1321159,1321166..1321168, 1321178..1321180,1321190..1321192,1321202..1321210, 1321214..1321219,1321226..1321228,1321259..1321264, 1321271..1321276,1321283..1321285,1321289..1321300, 1321322..1321324,1321337..1321339,1321349..1321351, 1321358..1321369,1321403..1321405,1321409..1321459)) /gene="gltA" /locus_tag="AGROH133_05897" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99867" misc_feature complement(1320344..1321441) /gene="gltA" /locus_tag="AGROH133_05897" /note="Citrate synthase; Region: Citrate_synt; pfam00285" /db_xref="CDD:189486" misc_feature complement(order(1320347..1320349,1320356..1320358, 1320410..1320412,1320422..1320424,1320485..1320487, 1320491..1320493,1320500..1320502,1320506..1320508, 1320632..1320634,1320647..1320649,1320656..1320679, 1320764..1320766,1320773..1320775,1320779..1320787, 1320878..1320880,1320887..1320889,1321433..1321435)) /gene="gltA" /locus_tag="AGROH133_05897" /note="active site" /db_xref="CDD:99867" misc_feature complement(order(1320410..1320412,1320491..1320493, 1320632..1320634,1320656..1320670,1320674..1320679, 1320782..1320787,1320878..1320880,1320887..1320889, 1321433..1321435)) /gene="gltA" /locus_tag="AGROH133_05897" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(1321007..1321009,1321073..1321075, 1321085..1321087,1321139..1321141,1321232..1321252, 1321256..1321258)) /gene="gltA" /locus_tag="AGROH133_05897" /note="NADH binding [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(1320959..1320964,1321004..1321042, 1321193..1321210,1321217..1321243)) /gene="gltA" /locus_tag="AGROH133_05897" /note="cationic pore residues; other site" /db_xref="CDD:99867" misc_feature complement(order(1320347..1320349,1320410..1320412, 1320422..1320424,1320485..1320487,1320632..1320634, 1320659..1320661,1320779..1320784,1320878..1320880, 1320887..1320889)) /gene="gltA" /locus_tag="AGROH133_05897" /note="oxalacetate/citrate binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(1320356..1320358,1320485..1320487, 1320491..1320493,1320500..1320502,1320506..1320508, 1320647..1320649,1320656..1320658,1320662..1320679, 1320764..1320766,1320773..1320775,1320782..1320787)) /gene="gltA" /locus_tag="AGROH133_05897" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99867" misc_feature complement(order(1320485..1320487,1320659..1320661, 1320782..1320784)) /gene="gltA" /locus_tag="AGROH133_05897" /note="catalytic triad [active]" /db_xref="CDD:99867" gene 1321838..1324318 /locus_tag="AGROH133_05898" /db_xref="GeneID:10267077" CDS 1321838..1324318 /locus_tag="AGROH133_05898" /note="ComEC/Rec2-related protein, Competence protein; Predicted membrane metal-binding protein" /codon_start=1 /transl_table=11 /product="ComEC/Rec2-related protein" /protein_id="YP_004278615.1" /db_xref="GI:325292751" /db_xref="GeneID:10267077" /translation="MLGQGEKQHFEYAKTMQGDLPGTREILFPLRRSSDAATYDTPAI IPEINRNTTVAEKIAMCLAEERAFGHDFLFIPVSIGCGAVLWFSLDATPSPVVLIATF LFVAVLALFVRYKAGIAAAVCGPFAFLLLGMLLADFETRRAGTVVLDTPVTTTITGTV ARREVDARGYWRYVVDLTATADPTLSRPPQRISVLSRGGGEPIALGATLRGKVRLSPP SGPALPGLNDFAFTSYFKGIGATGFFYKSPQALVSPVGDARPDKGWLEWADMRLYGLR SAIAERIRTTIGGDAGAFAASIITDERQAISAETMEALRLSGLAHIVAISGLNMALAS GIFFVGLRLAFSLFPAFAQRWPVKKIAAFAALLMTLAYYLISGFAVSAERAWLMMSVM LIAVLFDQPSLSLRNVAISALIILAFSPSEIMGPSFQMSFAATIALVSAYAFWSRWRT DRERLFIGRKPAWLKVAGMMGAVIGGVITTSLIGGLSTAIYSAEHFHRVTTYGLFANL AAMPLMSLIVMPFALLAMLLMPFGLDAPFLKIMGYGMALVIEVANEVASWGGSAATGR PHGWFIGLASVGFLLLTLLRSRLALLGIPFLLFAFGVSAVTAYRDLPDLLIHEDGELV ALLEDGKVSTTKARPQSFVYGQWQRALLLPEKTVPPGFINGESTANTAGSDSRSKLSP EDMAVVVREMTAALKDAKAGVFTCRKDIWCVASAASGEWIVVLEDGRFAGKACDIADI VVVSRRTSFSQCRSGALLLSRDILRRLGSVEIDFADKREEGVASGLRAAIAGTDRPWS QHRYYDWKSGRFDRDLPQPIIRLLAASQ" misc_feature 1322729..1323574 /locus_tag="AGROH133_05898" /note="Competence protein; Region: Competence; cl00471" /db_xref="CDD:193833" gene complement(1324335..1325018) /locus_tag="AGROH133_05911" /db_xref="GeneID:10267078" CDS complement(1324335..1325018) /locus_tag="AGROH133_05911" /EC_number="2.5.1.18" /note="Glutathione S-transferase, C-terminal-like" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase" /protein_id="YP_004278616.1" /db_xref="GI:325292752" /db_xref="GeneID:10267078" /translation="MYDLYIANKNYSSWSLRPWVLMRTLGIAFDEKLIPFGEGVSFSS FSPTGKVPCLVDEGMTVWETLSIVEYLAERHQGVWASDKHARAWSRSAASEMHAGFSS LRNLYPMSVGIRVKPKGGDAGLKADIKRIDALWSEGLTKFGGPYLAGQKFTAVDAFFC PVAFRFQTYGSADLSPAAKAYCDRLLALPAMQEWYEAGLKESWRDAGHEEEVGGIGEL TEDLRAKAR" misc_feature complement(1324803..1325012) /locus_tag="AGROH133_05911" /note="GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH)...; Region: GST_N_1; cd03043" /db_xref="CDD:48592" misc_feature complement(1324428..1324991) /locus_tag="AGROH133_05911" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature complement(order(1324812..1324817,1324824..1324826, 1324947..1324952,1324959..1324964,1324968..1324973, 1324977..1324979)) /locus_tag="AGROH133_05911" /note="putative C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48592" misc_feature complement(order(1324827..1324832,1324863..1324871, 1324977..1324979)) /locus_tag="AGROH133_05911" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48592" misc_feature complement(order(1324812..1324814,1324821..1324826, 1324830..1324835,1324869..1324871)) /locus_tag="AGROH133_05911" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48592" misc_feature complement(1324428..1324766) /locus_tag="AGROH133_05911" /note="GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous...; Region: GST_C_3; cd03194" /db_xref="CDD:48121" misc_feature complement(order(1324524..1324526,1324536..1324538, 1324545..1324550,1324557..1324559,1324740..1324742, 1324761..1324763)) /locus_tag="AGROH133_05911" /note="putative N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48121" misc_feature complement(order(1324629..1324631,1324749..1324751, 1324758..1324763)) /locus_tag="AGROH133_05911" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48121" misc_feature complement(order(1324524..1324526,1324533..1324535, 1324713..1324718,1324725..1324730,1324740..1324742)) /locus_tag="AGROH133_05911" /note="putative substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48121" gene complement(1325311..1325415) /locus_tag="AGROH133_05912" /db_xref="GeneID:10267079" CDS complement(1325311..1325415) /locus_tag="AGROH133_05912" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278617.1" /db_xref="GI:325292753" /db_xref="GeneID:10267079" /translation="MKMAPISGLAVSKRGVLLRVHEDMRHSAYARCPF" gene complement(1325458..1326180) /gene="lexA" /locus_tag="AGROH133_05913" /db_xref="GeneID:10267080" CDS complement(1325458..1326180) /gene="lexA" /locus_tag="AGROH133_05913" /EC_number="3.4.21.88" /note="Represses a number of genes involved in the response to DNA damage; SOS-response transcriptional repressors (RecA- mediated autopeptidases)" /codon_start=1 /transl_table=11 /product="LexA repressor" /protein_id="YP_004278618.1" /db_xref="GI:325292754" /db_xref="GeneID:10267080" /translation="MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRL ITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQRGFSPSVIEGSLGKPKTPEPAP APKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYET RIFGPDRVKIQGKLVGLIRRYH" misc_feature complement(1325464..1326180) /gene="lexA" /locus_tag="AGROH133_05913" /note="LexA repressor; Validated; Region: PRK00215" /db_xref="CDD:178931" misc_feature complement(1325992..1326177) /gene="lexA" /locus_tag="AGROH133_05913" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1325482..1325727) /gene="lexA" /locus_tag="AGROH133_05913" /note="Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (...; Region: S24_LexA-like; cd06529" /db_xref="CDD:119397" misc_feature complement(order(1325587..1325589,1325701..1325703)) /gene="lexA" /locus_tag="AGROH133_05913" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 1326392..1327273 /locus_tag="AGROH133_05914" /db_xref="GeneID:10267081" CDS 1326392..1327273 /locus_tag="AGROH133_05914" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278619.1" /db_xref="GI:325292755" /db_xref="GeneID:10267081" /translation="MTKPYSVDHLVLPVEVIGVAVKRLVSLGFTVAPEALHPFGTQNA CVFFADGTYLEPLAIADPAKYNESIERGDVFTGRDVAFRQRDGQEGFSALVARTEDAL VDHERFRAAGLSAGDVFEFSRPVRMPDGSQGEAAFRLAFAASGAAADFFLFSCQRLQA LPGDRTMLERHANGVTGLSEIVLFTGGDAKVAGLIETVFGCEGKWSPGGDMVFATGNA SIRLTGKPPFGGQALSAQDGNEGGLRGAGIVFSSHDLAVTEAVLAANGVSCAKADGRL VVPAAPGQGVAFAFEEK" gene 1327273..1328118 /gene="kdsA" /locus_tag="AGROH133_05915" /db_xref="GeneID:10267082" CDS 1327273..1328118 /gene="kdsA" /locus_tag="AGROH133_05915" /EC_number="2.5.1.55" /note="catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 3-deoxy-D-manno-octulosonic acid (KDO) 8- phosphate synthase" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxyphosphooctonate aldolase / KDO 8-P synthase" /protein_id="YP_004278620.1" /db_xref="GI:325292756" /db_xref="GeneID:10267082" /translation="MSVTNNLKVTAGDGASKVSFSNAERFSLIAGPCQMESREHAFMI AGVLKELCDKLGIGLVYKSSFDKANRTSLSGKRGIGLDNAMQVFADLKKEFGFPVLTD IHTEEQCAVVSEVVDVLQIPAFLSRQTDLLVAAAKTGRVINVKKGQFLAPWDMKNVLA KLNESGNPNVMLCERGASFGYNTLVSDMRSLPIMAALGAPVVFDATHSVQQPGGQGGS TGGQREFVETLARAAVAVGVAGLFIETHEDPDNAPSDGPNMVHLKDMPKLLEKLLAFD AITKA" misc_feature 1327318..1328088 /gene="kdsA" /locus_tag="AGROH133_05915" /note="DAHP synthetase I family; Region: DAHP_synth_1; pfam00793" /db_xref="CDD:189723" misc_feature 1327324..1328109 /gene="kdsA" /locus_tag="AGROH133_05915" /note="NeuB family; Region: NeuB; cl00496" /db_xref="CDD:186036" gene 1328129..1328221 /locus_tag="AGROH133_05916" /db_xref="GeneID:10267083" CDS 1328129..1328221 /locus_tag="AGROH133_05916" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278621.1" /db_xref="GI:325292757" /db_xref="GeneID:10267083" /translation="MTAGTFVPIDFNGGRAVSAAHRHCNFFAIV" gene 1328266..1329540 /gene="eno" /locus_tag="AGROH133_05917" /db_xref="GeneID:10267084" CDS 1328266..1329540 /gene="eno" /locus_tag="AGROH133_05917" /EC_number="4.2.1.11" /note="enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis" /codon_start=1 /transl_table=11 /product="Enolase" /protein_id="YP_004278622.1" /db_xref="GI:325292758" /db_xref="GeneID:10267084" /translation="MTAITDIIAREILDSRGNPTVEVDVYLEDGSMGRAAVPSGASTG AHEAVELRDGGKRYLGKGVEKAVEAVNTEIFDAIGGFDAENQIQIDQMMIALDGTPNK SRIGANAILGVSLAVAKAAAEASGLPLYRYVGGPNAHLLPVPMMNIINGGAHADNPID FQEFMILPVGAENIREAVRMGSEVFHTLKKELSAQGHNTNVGDEGGFAPGLESAPAAL DFIMKSIEKAGYRPGDDMFIGLDCAATEFFKNGNYVYEGEGKTRSPIEQAEYLAELVA KYPIISVEDGMAEDDWDGWKALTDLIGNKCQLVGDDLFVTNSARLRDGIKMGVANSIL VKVNQIGSLSETLDAVETAHKAGYTAVMSHRSGETEDSTIADLAVATNCGQIKTGSLA RSDRLAKYNQLIRIEEMLGPQAAYAGRSILRG" misc_feature 1328266..1329537 /gene="eno" /locus_tag="AGROH133_05917" /note="enolase; Provisional; Region: eno; PRK00077" /db_xref="CDD:178845" misc_feature 1328281..1329489 /gene="eno" /locus_tag="AGROH133_05917" /note="Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313" /db_xref="CDD:48188" misc_feature order(1328287..1328289,1328293..1328319,1328329..1328331, 1328365..1328367,1328728..1328736,1328797..1328802, 1328809..1328814,1328821..1328826,1328863..1328868, 1328887..1328889,1328893..1328895,1329367..1329375, 1329442..1329450,1329454..1329459,1329466..1329468, 1329475..1329480,1329487..1329489) /gene="eno" /locus_tag="AGROH133_05917" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48188" misc_feature order(1328389..1328391,1328986..1328988,1329115..1329117, 1329196..1329198) /gene="eno" /locus_tag="AGROH133_05917" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:48188" misc_feature order(1328725..1328727,1328875..1328877,1329271..1329273, 1329355..1329363,1329424..1329426) /gene="eno" /locus_tag="AGROH133_05917" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:48188" gene 1329877..1330194 /locus_tag="AGROH133_05918" /db_xref="GeneID:10267085" CDS 1329877..1330194 /locus_tag="AGROH133_05918" /codon_start=1 /transl_table=11 /product="Septum formation initiator" /protein_id="YP_004278623.1" /db_xref="GI:325292759" /db_xref="GeneID:10267085" /translation="MWTRHHKKRRFGRLIVPAITIAFLSYFGYHSIHGDFGLQATERL ERQRIARTAELAKLTQARVALERQVELLSDGSLERDMIDEISRYQLNMSRTDEIVIMN TYF" misc_feature 1329877..1330179 /locus_tag="AGROH133_05918" /note="Septum formation initiator; Region: DivIC; cl11433" /db_xref="CDD:187037" gene 1330348..1331391 /gene="pdhA" /locus_tag="AGROH133_05920" /db_xref="GeneID:10267086" CDS 1330348..1331391 /gene="pdhA" /locus_tag="AGROH133_05920" /EC_number="1.2.4.1" /note="catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, subunit alpha" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase E1 component, subunit alpha" /protein_id="YP_004278624.1" /db_xref="GI:325292760" /db_xref="GeneID:10267086" /translation="MAPRKTASVSGRKTTAKAAGEFTGKNSPDFSKEEELHAYREMLL IRRFEEKAGQLYGMGFIGGFCHLYIGQEAVVVGMQMSQKEGDQVITAYRDHGHMLALG MSARGVMAELTGRKGGLSKGKGGSMHMFSKEKHFYGGHGIVGAQVSLGTGLAFANKYR GNDNVSVTYFGDGAANQGQVYESFNMAALWKLPIIYIVENNRYAMGTSTARATAQSNY SLRGQSFGIPGIQVDGMDVRAVKAAADQALEHCRSGKGPIILEMLTYRYRGHSMSDPA KYRSKDEVQKMRSEHDPIEQVKARLLEQGWASEDELKAIDKDVRDIVADSADFAQNDP EPDVSELYTDILL" misc_feature 1330408..1331373 /gene="pdhA" /locus_tag="AGROH133_05920" /note="pyruvate dehydrogenase E1 component alpha subunit; Reviewed; Region: odpA; CHL00149" /db_xref="CDD:177069" misc_feature 1330459..1331337 /gene="pdhA" /locus_tag="AGROH133_05920" /note="Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000" /db_xref="CDD:48163" misc_feature order(1330531..1330533,1330687..1330689,1330768..1330773, 1330864..1330866,1330870..1330881,1330888..1330890, 1330900..1330902,1330912..1330914,1330957..1330968, 1331008..1331010,1331023..1331025,1331176..1331178) /gene="pdhA" /locus_tag="AGROH133_05920" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:48163" misc_feature order(1330621..1330626,1330768..1330770,1330774..1330776, 1330858..1330869,1330948..1330950,1330954..1330956, 1331155..1331157) /gene="pdhA" /locus_tag="AGROH133_05920" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48163" misc_feature order(1330753..1330755,1330759..1330761,1330765..1330767, 1330780..1330782,1330789..1330794,1330801..1330806, 1330810..1330815,1330822..1330824,1330879..1330884, 1330900..1330905,1330912..1330914) /gene="pdhA" /locus_tag="AGROH133_05920" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:48163" misc_feature order(1331140..1331160,1331164..1331166,1331167..1331193, 1331218..1331226) /gene="pdhA" /locus_tag="AGROH133_05920" /note="phosphorylation loop region [posttranslational modification]" /db_xref="CDD:48163" gene 1331409..1332830 /gene="pdhB" /locus_tag="AGROH133_05921" /db_xref="GeneID:10267087" CDS 1331409..1332830 /gene="pdhB" /locus_tag="AGROH133_05921" /EC_number="1.2.4.1" /note="catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase E1 component beta subunit" /protein_id="YP_004278625.1" /db_xref="GI:325292761" /db_xref="GeneID:10267087" /translation="MPVEILMPALSPTMEEGTLSKWLKKEGDKVTSGDVIAEIETDKA TMEVEAVDEGVIGKLLIDAGTEGVKVNTPIAVLIQEGESAADISSSAKKEEPKAEAAN SDSDAAGGKTREASEEPSAAKEAAKVPAAPKIEVAADPDIPEGTEMVMTTVREALRDA MAEEMRADEKVFVMGEEVAEYQGAYKITQGLLQEFGERRVIDTPITEHGFAGIGVGAA MTGLRPIVEFMTFNFAMQAIDQIVNSAAKTLYMSGGQMGAPMVFRGPSGAAARVGAQH SQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPKLD DFVLPIGKARIHRKGKDATIVSFGIGMTYAIKAVAELEKLGIDVELIDLRTIRPMDLP TVIESVKKTGRLVTVEEGFPQSSVGDFIANQVMRAAFDYLDAPILTIAGKDVPMPYAA NLEKLALPNVDEVVQAVKTVCYK" misc_feature 1331409..1332827 /gene="pdhB" /locus_tag="AGROH133_05921" /note="pyruvate dehydrogenase subunit beta; Provisional; Region: PRK11892" /db_xref="CDD:183363" misc_feature 1331415..1331639 /gene="pdhB" /locus_tag="AGROH133_05921" /note="Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849" /db_xref="CDD:133458" misc_feature order(1331505..1331507,1331526..1331543,1331553..1331555) /gene="pdhB" /locus_tag="AGROH133_05921" /note="E3 interaction surface; other site" /db_xref="CDD:133458" misc_feature 1331535..1331537 /gene="pdhB" /locus_tag="AGROH133_05921" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133458" misc_feature 1331871..1332371 /gene="pdhB" /locus_tag="AGROH133_05921" /note="Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036" /db_xref="CDD:132919" misc_feature order(1331913..1331915,1331919..1331921,1331937..1331939, 1332003..1332005,1332012..1332014,1332018..1332035, 1332042..1332047,1332051..1332059,1332114..1332116, 1332123..1332128,1332153..1332158,1332222..1332224, 1332231..1332233,1332276..1332281,1332342..1332347) /gene="pdhB" /locus_tag="AGROH133_05921" /note="alpha subunit interface [polypeptide binding]; other site" /db_xref="CDD:132919" misc_feature order(1331934..1331936,1332021..1332023,1332027..1332029, 1332105..1332107,1332114..1332116) /gene="pdhB" /locus_tag="AGROH133_05921" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132919" misc_feature order(1331937..1331939,1332012..1332014,1332018..1332029, 1332111..1332116,1332120..1332122,1332135..1332137, 1332147..1332149,1332156..1332158,1332222..1332224, 1332228..1332233,1332255..1332257,1332261..1332266, 1332270..1332272) /gene="pdhB" /locus_tag="AGROH133_05921" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:132919" misc_feature 1332429..1332794 /gene="pdhB" /locus_tag="AGROH133_05921" /note="Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780" /db_xref="CDD:145764" gene 1332845..1334215 /gene="aceF" /locus_tag="AGROH133_05922" /db_xref="GeneID:10267088" CDS 1332845..1334215 /gene="aceF" /locus_tag="AGROH133_05922" /EC_number="2.3.1.12" /note="Dihydrolipoamide acetyltransferase, long form, 2-oxoacid dehydrogenases acyltransferase (catalytic domain); Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes" /codon_start=1 /transl_table=11 /product="dihydrolipoamide acetyltransferase" /protein_id="YP_004278626.1" /db_xref="GI:325292762" /db_xref="GeneID:10267088" /translation="MPINITMPALSPTMEEGNLAKWLVKEGDKVAPGDVIAEIETDKA TMEVEAVDEGTVAKLVVPAGTEAVKVNALIAILAADGEDVAEAAKGGNAAPAASQAKA EAPKQEAAKAEAPKEEAVPAKAEKPAADQASAPSTPAPVAKSGERIFASPLARRLAKE AGLDLTAVSGSGPHGRIVKTDVEKAAASGGAKAAPAAAASAGAPAAALAKGPSEEAVL KLFEPGSYELVPHDGMRKVIAKRLVESKQTVPHFYVSVDCELDTLLALRAQLNAAAPE KDGKPAYKLSVNDMVIKALALALRDVPDANVSWTESNMVKHKHSDVGVAVSIPGGLIT PIIRKAEEKSLSTISNEMKDYGKRAKERKLKPEEYQGGTTAVSNMGMMGVKSFSAVIN PPHATILAVGAGEQRAVVKNGEIKIANVMTVTLSTDHRCVDGALGAELIGAFKRYIEN PMGMLV" misc_feature 1332851..1333075 /gene="aceF" /locus_tag="AGROH133_05922" /note="Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849" /db_xref="CDD:133458" misc_feature 1332854..1334212 /gene="aceF" /locus_tag="AGROH133_05922" /note="pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; Region: PDHac_trf_mito; TIGR01349" /db_xref="CDD:162311" misc_feature order(1332941..1332943,1332962..1332979,1332989..1332991) /gene="aceF" /locus_tag="AGROH133_05922" /note="E3 interaction surface; other site" /db_xref="CDD:133458" misc_feature 1332971..1332973 /gene="aceF" /locus_tag="AGROH133_05922" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133458" misc_feature 1333280..1333393 /gene="aceF" /locus_tag="AGROH133_05922" /note="e3 binding domain; Region: E3_binding; pfam02817" /db_xref="CDD:111687" misc_feature 1333511..1334212 /gene="aceF" /locus_tag="AGROH133_05922" /note="2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; cl02008" /db_xref="CDD:194225" gene 1334228..1334872 /gene="ada" /locus_tag="AGROH133_05923" /db_xref="GeneID:10267089" CDS 1334228..1334872 /gene="ada" /locus_tag="AGROH133_05923" /EC_number="3.1.1.2" /note="Esterase, SGNH hydrolase-type, GDSL-like Lipase/Acylhydrolase; Lysophospholipase L1 and related esterases" /codon_start=1 /transl_table=11 /product="arylesterase" /protein_id="YP_004278627.1" /db_xref="GI:325292763" /db_xref="GeneID:10267089" /translation="MVKSVLCFGDSLTWGSDAETGGRHSHDDLWPSVLQKALGPDVKV IHEGLGGRTTAYDDHTADCDRNGARLLPTLLHSHAPLDLVIIMLGTNDLKPSIHGSAI VAMKGVERLVKLVRNHVWQVSDWEAPDVLIVAPPQLCETANPVMGAIFRDAIDESAML APVYRDLADDLDCGFFDAGSVARTTPVDGVHLDAENTRAIGRGLEPVVRMMLGL" misc_feature 1334237..1334860 /gene="ada" /locus_tag="AGROH133_05923" /note="SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that...; Region: SGNH_arylesterase_like; cd01839" /db_xref="CDD:58516" misc_feature order(1334258..1334260,1334378..1334380,1334498..1334500, 1334789..1334791,1334798..1334800) /gene="ada" /locus_tag="AGROH133_05923" /note="active site" /db_xref="CDD:58516" misc_feature order(1334258..1334260,1334789..1334791,1334798..1334800) /gene="ada" /locus_tag="AGROH133_05923" /note="catalytic triad [active]" /db_xref="CDD:58516" misc_feature order(1334258..1334260,1334378..1334380,1334498..1334500) /gene="ada" /locus_tag="AGROH133_05923" /note="oxyanion hole [active]" /db_xref="CDD:58516" gene 1334931..1336376 /gene="lpdA" /locus_tag="AGROH133_05924" /db_xref="GeneID:10267090" CDS 1334931..1336376 /gene="lpdA" /locus_tag="AGROH133_05924" /EC_number="1.8.1.4" /note="E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes" /codon_start=1 /transl_table=11 /product="dihydrolipoamide dehydrogenase" /protein_id="YP_004278628.1" /db_xref="GI:325292764" /db_xref="GeneID:10267090" /translation="MAQSYDVIIIGSGPGGYIAAIRAAQLGMKVAVVEREHLAGICSN WGCIPTKALLRTADVLHTAQHAKDYGLTLEGSIKPDVKAIVDRSRGIAHRMNNGVGFL FKKNKVDIIWGEAKITKPGEIVVSKTQKKPVEPMGPVPKNTLGEGTYTAKHIIVATGA RPRALPGIEPDGKLIWTYFEAMKPEELPKSLLVMGSGAIGIEFASFYRTMGVDVTVVE IMSQVMPVEDAEISAFAKKQLEKQGIKFHLETKVAKVEKAANSVTATLEKKDGSSEKI TADRMISAVGVVANIEGIGLEAVGVKTDRGFIVIDGYGKTNVPGVYAIGDVAGPPLLA HKAEHEAVICVEKIAGLPNVHPMDKLKIPGCTYCNPQVASVGLTEAKAKELGRDIRVG RFSFAANGKAVALGEDQGMVKTIFDKKTGELIGAHMVGAEVTELIQGFVVAMNLETTE EELMHTIFPHPTISESMKESVLDAYGRVLNA" misc_feature 1334931..1336373 /gene="lpdA" /locus_tag="AGROH133_05924" /note="dihydrolipoamide dehydrogenase; Reviewed; Region: PRK06416" /db_xref="CDD:180558" misc_feature 1334931..>1335065 /gene="lpdA" /locus_tag="AGROH133_05924" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 1335498..1335743 /gene="lpdA" /locus_tag="AGROH133_05924" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 1336014..1336337 /gene="lpdA" /locus_tag="AGROH133_05924" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene 1336458..1336706 /locus_tag="AGROH133_05925" /db_xref="GeneID:10267091" CDS 1336458..1336706 /locus_tag="AGROH133_05925" /note="Transglycosylase-associated protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278629.1" /db_xref="GI:325292765" /db_xref="GeneID:10267091" /translation="MENIGWIAAIIIGGLAGWLAGKLMDMRFGIFMNIVLGIVGSVVA VAVLRTFDVFVQDSRLGYFVTSFIGASLLLFMAKLVRR" misc_feature <1336530..1336703 /locus_tag="AGROH133_05925" /note="Transglycosylase associated protein; Region: Transgly_assoc; cl00978" /db_xref="CDD:186289" gene 1336778..1337782 /gene="lipA" /locus_tag="AGROH133_05929" /db_xref="GeneID:10267092" CDS 1336778..1337782 /gene="lipA" /locus_tag="AGROH133_05929" /EC_number="2.8.1.-" /note="catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; Lipoate synthase" /codon_start=1 /transl_table=11 /product="lipoic acid synthetase" /protein_id="YP_004278630.1" /db_xref="GI:325292766" /db_xref="GeneID:10267092" /translation="MIAASDRNRFLMVTILDRTSSEEKRIRHPEKAHRPDTEVMRKPE WIRVKAPTSKGYHETRELVRSHKLVTVCEEAGCPNIGECWDKKHATFMIMGEICTRAC AFCNVATGKPNALDMDEPENVAKAVKQMGLSHVVITSVDRDDLADGGAEHFEKVIWAI RAASPNTTIEILTPDFLKKPGALERVVAAKPDVFNHNMETVPGNYLTVRPGARYFHSV RLLQRVKELDPTMFTKSGIMVGLGEERNEVLQLMDDLRSADVDFLTIGQYLQPTRKHH KVEAYVTPEEFKSYETVAYTKGFLMVSSSPLTRSSHHAGDDFARLRAAREKKLLAAAE " misc_feature 1336883..1337731 /gene="lipA" /locus_tag="AGROH133_05929" /note="lipoyl synthase; Provisional; Region: PRK05481" /db_xref="CDD:180115" misc_feature 1337051..1337542 /gene="lipA" /locus_tag="AGROH133_05929" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" gene complement(1337861..1338790) /locus_tag="AGROH133_05930" /db_xref="GeneID:10267093" CDS complement(1337861..1338790) /locus_tag="AGROH133_05930" /note="Protein of unknown function DUF6, transmembrane" /codon_start=1 /transl_table=11 /product="integral membrane protein" /protein_id="YP_004278631.1" /db_xref="GI:325292767" /db_xref="GeneID:10267093" /translation="MNKTSLGVIYGMMAGALWGAIFLAPKLVPDFSALQLSTARYLTY GLISLVIIGPRLKRVSAHFGAREWIALGWLSMIGNIAYYVFISTAVKLSGVAFTSIII GFLPVAVTIIGTRDHGAVSLKRLWPSLAFGAIGIIGISWQSLTESDAGLDVSRLIGLA CALGALASWTAFAVGNARWLSRLHDVSADDWNMMTGVVTGGLALALAIPAFAFGGESH SSKDWLHFAAIAAGLGFTASILGNALWNRMSRLLPLTMVGQMILFETLFALLYGFLWE GRGPTIVEVLAICSVVLSVILCMRAHRPEKVVA" gene complement(1338886..1339644) /locus_tag="AGROH133_05941" /db_xref="GeneID:10267094" CDS complement(1338886..1339644) /locus_tag="AGROH133_05941" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-type DNA-binding domain-containing proteins" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004278632.1" /db_xref="GI:325292768" /db_xref="GeneID:10267094" /translation="MHDGNDNLMIAASADIRTYTQERPKERHGFVQIVLPVSGCLRID VAGLQDELSTGRAVFIHPNTSHTQEATTINRSLVVDIDETAVPEQVLERFVHKPFLDI ARDTRQLIAYMRGVIGSDGPREDIANLWAPLLIDSLATEKTDIRHRLHALGEIVRAEP FFPWTIETLASCAAISDSRLHALFLEEFNLPPHRWLAELRMDKVCALLRHSTLPIAEI ALRAGFSDQTALTRAMRNAMGKTPAAYRRAFGIH" misc_feature complement(1338907..1339158) /locus_tag="AGROH133_05941" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:128636" misc_feature complement(1338904..1339017) /locus_tag="AGROH133_05941" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene complement(1339735..1340028) /locus_tag="AGROH133_05942" /db_xref="GeneID:10267095" CDS complement(1339735..1340028) /locus_tag="AGROH133_05942" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278633.1" /db_xref="GI:325292769" /db_xref="GeneID:10267095" /translation="MRLILHPWDATALEPPIFTALIHPWVHTHITRFEPLSEPMDDFS NIINLLESAKQLASMNEMPMLAYLIDVAKCEARENKPVLRKRKRGESTAKEEC" gene 1340160..1340729 /locus_tag="AGROH133_05943" /db_xref="GeneID:10267096" CDS 1340160..1340729 /locus_tag="AGROH133_05943" /note="Adenylate kinase and related kinases" /codon_start=1 /transl_table=11 /product="DNA topology modulation kinase FlaR-like protein" /protein_id="YP_004278634.1" /db_xref="GI:325292770" /db_xref="GeneID:10267096" /translation="MPNYLENVEDAAAIIASAQRISVVGCSGGGKSTLSRKLVRRFGF EYISMDRDIFWLPGWQVRPRQEQRQRIAAIVTKDRWLMDGSNPSSFDMRLPRSDIVLW VRMPRWLCLWGAITRIARGYGKARPEMAEGCPERLDLDFLRYIWNFERRHAPIFEQNF ALYGPNVPVFQLKSRKQLRRLLDLLVIED" misc_feature 1340214..1340621 /locus_tag="AGROH133_05943" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 1340739..1341194 /locus_tag="AGROH133_05944" /db_xref="GeneID:10267097" CDS 1340739..1341194 /locus_tag="AGROH133_05944" /note="Polyketide cyclase / dehydrase and lipid transport; Oligoketide cyclase/lipid transport protein" /codon_start=1 /transl_table=11 /product="oligoketide cyclase/dehydrase protein" /protein_id="YP_004278635.1" /db_xref="GI:325292771" /db_xref="GeneID:10267097" /translation="MPQFETHRLVKHSPDRMYDLVADVEKYPQFLPLCEALVIRSRKE RDGKTLLVADMTVGYKAIRETFTTQVLLNPAERAIDVKYIDGPFKYLDNRWRFEASAE GGSAIHFFIEYEFKNRLLGAVMGSMFDRAFRMFAEAFETRADKIYADPA" misc_feature 1340748..1341176 /locus_tag="AGROH133_05944" /note="Coenzyme Q-binding protein COQ10p and similar proteins; Region: COQ10p_like; cd07813" /db_xref="CDD:176855" misc_feature order(1340748..1340750,1340754..1340756,1340760..1340762, 1340787..1340795,1340799..1340804,1340847..1340849, 1340889..1340891,1340895..1340897,1340901..1340903, 1340907..1340909,1340940..1340942,1340946..1340948, 1340952..1340954,1340973..1340975,1340979..1340981, 1341012..1341017,1341021..1341023,1341027..1341029, 1341057..1341059,1341063..1341065,1341069..1341071, 1341075..1341077,1341108..1341122,1341126..1341134, 1341138..1341146,1341153..1341155) /locus_tag="AGROH133_05944" /note="putative coenzyme Q binding site [chemical binding]; other site" /db_xref="CDD:176855" gene complement(1341176..1341685) /gene="cinA" /locus_tag="AGROH133_05945" /db_xref="GeneID:10267098" CDS complement(1341176..1341685) /gene="cinA" /locus_tag="AGROH133_05945" /note="Competence-damaged protein; Uncharacterized protein (competence- and mitomycin-induced)" /codon_start=1 /transl_table=11 /product="competence/damage-inducible protein CinA" /protein_id="YP_004278636.1" /db_xref="GI:325292772" /db_xref="GeneID:10267098" /translation="MSLFPADIEELARRIISDFTAGGFMVSTAESCTGGLIAGSLTEI AGSSAVVDRGFVTYTNQAKMDMLGVGTETLANFGAVSRQTALQMAHGALFRSRADFAV AVTGIAGPGGGSAEKPVGLVHLAARSRSGKILHHEMHYGEIGRTEIRLATIRTALEML ITLNQAGSA" misc_feature complement(1341206..1341664) /gene="cinA" /locus_tag="AGROH133_05945" /note="Competence-damaged protein; Region: CinA; cl00666" /db_xref="CDD:186135" gene complement(1341682..1342869) /gene="ispF" /locus_tag="AGROH133_05946" /db_xref="GeneID:10267099" CDS complement(1341682..1342869) /gene="ispF" /locus_tag="AGROH133_05946" /EC_number="2.7.7.60" /EC_number="4.6.1.12" /note="bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" /codon_start=1 /transl_table=11 /product="ISPD/ISPF bifunctional enzyme" /protein_id="YP_004278637.1" /db_xref="GI:325292773" /db_xref="GeneID:10267099" /translation="MKLGIVVVAAGRGERAGSPEEGPKQYRPIGGKAVIEHTLSTFLA WAGTYPIVVVIHADDAALLSPILERLNAGERIVTVTGGATRQQSVLAGLEALAAQDLT HVMIHDAVRPFIAVDMLERIVTLHKAGAVGVLPALPVTDTLKRGASDSVAETVSRQGL YAAQTPQSFGYGEILAAHRAAATSGKTDFTDDASIAEWASLPVTLTEGSVDNVKLTLK RDIAMADEKLSYGLPDVRTGNGYDVHQLEAGDGVTLCGVFIEHDQKLKGHSDADVALH ALTDALLATCGAGDIGDHFPPSDPQWKGAASRIFLEHAAKVVRGNGGTIMNADVSLIA EAPRIGPHRQAMREALSDMLGIALERCSVKATTNETIGFVGRREGIAAIATATVVYKG RPL" misc_feature complement(1341688..1342869) /gene="ispF" /locus_tag="AGROH133_05946" /note="bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional; Region: ispDF; PRK09382" /db_xref="CDD:181813" misc_feature complement(1342198..1342854) /gene="ispF" /locus_tag="AGROH133_05946" /note="CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516" /db_xref="CDD:133009" misc_feature complement(order(1342228..1342230,1342540..1342548, 1342606..1342608,1342615..1342626,1342798..1342800, 1342825..1342842,1342846..1342848)) /gene="ispF" /locus_tag="AGROH133_05946" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133009" misc_feature complement(order(1342240..1342245,1342255..1342266, 1342279..1342281,1342288..1342293,1342297..1342302, 1342381..1342398,1342447..1342449,1342453..1342455, 1342483..1342485,1342537..1342539)) /gene="ispF" /locus_tag="AGROH133_05946" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133009" misc_feature complement(1341706..1342164) /gene="ispF" /locus_tag="AGROH133_05946" /note="MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid...; Region: MECDP_synthase; cd00554" /db_xref="CDD:100025" misc_feature complement(order(1341709..1341711,1341715..1341717, 1341721..1341723,1341760..1341768,1341775..1341780, 1341784..1341786,1341850..1341852,1341856..1341858, 1341877..1341879,1341883..1341885,1341889..1341891, 1342000..1342005,1342009..1342014,1342018..1342020, 1342123..1342125,1342135..1342143,1342147..1342149, 1342153..1342155,1342159..1342164)) /gene="ispF" /locus_tag="AGROH133_05946" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100025" misc_feature complement(order(1342042..1342044,1342138..1342140, 1342144..1342146)) /gene="ispF" /locus_tag="AGROH133_05946" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:100025" misc_feature complement(order(1341769..1341777,1341850..1341861, 1341865..1341870,1341994..1341996,1342000..1342002)) /gene="ispF" /locus_tag="AGROH133_05946" /note="CDP-binding sites; other site" /db_xref="CDD:100025" gene 1343160..1344161 /gene="nifR" /locus_tag="AGROH133_05947" /db_xref="GeneID:10267100" CDS 1343160..1344161 /gene="nifR" /locus_tag="AGROH133_05947" /note="TIM-barrel protein, nifR3 family; tRNA-dihydrouridine synthase" /codon_start=1 /transl_table=11 /product="nitrogen regulation protein" /protein_id="YP_004278638.1" /db_xref="GI:325292774" /db_xref="GeneID:10267100" /translation="MPLPELSVPFSIGSVAIRNRAVLAPMSGVTDLPFRQLAWRYGAG LVVTEMVASRELVANRGESWARLKNAGMVPHMVQLAGREAHFMAEAAKIAADNGAGII DINMGCPAKKVTGGYSGSALMRDPDHALSLIEATVGAVDVPVTLKMRLGWDENTINAP EIARRAQAAGVQLITIHGRTRMQFYEGRANWDAIRAVREVISVPLIANGDVETAEDAR EILSRSGADAVMVGRGAQGQPWLPAVLAGHAAPQRADIADIAVEHYDMMLEFYGREAG LRHARKHLGWYLDRFATEIATTDKAKIMTSRDTGEVADLLRSALCDNAGEEAARKAA" misc_feature 1343223..1344119 /gene="nifR" /locus_tag="AGROH133_05947" /note="Dihydrouridine synthase (Dus); Region: Dus; pfam01207" /db_xref="CDD:144707" misc_feature 1343223..1343882 /gene="nifR" /locus_tag="AGROH133_05947" /note="Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and...; Region: DUS_like_FMN; cd02801" /db_xref="CDD:73368" misc_feature order(1343229..1343237,1343307..1343309,1343391..1343393, 1343472..1343474,1343598..1343600,1343688..1343690, 1343781..1343783,1343787..1343789,1343853..1343858) /gene="nifR" /locus_tag="AGROH133_05947" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73368" misc_feature order(1343391..1343393,1343481..1343486,1343598..1343600, 1343604..1343606,1343685..1343690,1343694..1343699, 1343784..1343789,1343856..1343858) /gene="nifR" /locus_tag="AGROH133_05947" /note="active site" /db_xref="CDD:73368" misc_feature order(1343481..1343483,1343604..1343606,1343688..1343690, 1343694..1343696) /gene="nifR" /locus_tag="AGROH133_05947" /note="catalytic residues [active]" /db_xref="CDD:73368" misc_feature order(1343484..1343486,1343598..1343600,1343685..1343687, 1343697..1343699,1343784..1343789) /gene="nifR" /locus_tag="AGROH133_05947" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73368" gene 1344158..1345306 /gene="ntrB" /locus_tag="AGROH133_05948" /db_xref="GeneID:10267101" CDS 1344158..1345306 /gene="ntrB" /locus_tag="AGROH133_05948" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase, nitrogen specific" /codon_start=1 /transl_table=11 /product="nitrogen regulation protein NtrB" /protein_id="YP_004278639.1" /db_xref="GI:325292775" /db_xref="GeneID:10267101" /translation="MSADKHSPADANPLAMAVLNAVQNPVILVDAEGFIAFANWEAEA FFGASASHLARYRVSTFIPFGSPLLALIDQVRERRAPVNEYRVDLSSPRLGQDKLVDL YVAPVVSEPGSVVVVFQERSMADKIDRQLTHRAAARSVTGLASMLAHEIKNPLSGIRG AAQLLETSVADEDRALTRLICDETDRIVSLVDRMEVFSDERPVDRVPVNIHSVLDHVK AIAKAGFARNIKISENYDPSLPAVYANRDQLVQVFLNLVKNAAEAVGNQSEGEIVLTT AYRPGMRMSVAGSRERISLPLEFCVHDNGPGVPADLLPHLFDPFITTKTNGSGLGLAL VAKLIGAHGGIVECDSQNHRTTFRVLMPVSPEVALDDRILPNSTGNDR" misc_feature 1344170..1345270 /gene="ntrB" /locus_tag="AGROH133_05948" /note="Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852" /db_xref="CDD:33642" misc_feature 1344569..1344751 /gene="ntrB" /locus_tag="AGROH133_05948" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1344584..1344586,1344596..1344598,1344608..1344610, 1344617..1344619,1344629..1344631,1344638..1344640, 1344683..1344685,1344695..1344697,1344704..1344706, 1344716..1344718,1344725..1344727,1344737..1344739) /gene="ntrB" /locus_tag="AGROH133_05948" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1344602..1344604 /gene="ntrB" /locus_tag="AGROH133_05948" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1344902..1345234 /gene="ntrB" /locus_tag="AGROH133_05948" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1344920..1344922,1344932..1344934,1344941..1344943, 1345058..1345060,1345064..1345066,1345070..1345072, 1345076..1345081,1345142..1345153,1345199..1345201, 1345205..1345207,1345217..1345222,1345226..1345228) /gene="ntrB" /locus_tag="AGROH133_05948" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1344932..1344934 /gene="ntrB" /locus_tag="AGROH133_05948" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1345070..1345072,1345076..1345078,1345142..1345144, 1345148..1345150) /gene="ntrB" /locus_tag="AGROH133_05948" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1345303..1346754 /gene="ntrC" /locus_tag="AGROH133_05949" /db_xref="GeneID:10267102" CDS 1345303..1346754 /gene="ntrC" /locus_tag="AGROH133_05949" /note="Nitrogen regulation protein NR(I); Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains" /codon_start=1 /transl_table=11 /product="Nitrogen assimilation regulatory protein" /protein_id="YP_004278640.1" /db_xref="GI:325292776" /db_xref="GeneID:10267102" /translation="MTATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWVSA GEGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLP KPFDLTELIAIIGRALSEPKRKPAKLDDDMQDGMPLVGRSAAMQEIYRVLARLMQTDL TLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA QNRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRTDVRIVA ATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFIQTGEKEGLEG KRFETEALEVMKAYAWPGNVRELENLIRRLMALYPQEVITREIIEQELQSDVPDSPLD KMAVRTGSLTISQAVEENMRDYFASFGEGLPPPGLYDRVLRELEYPLILAALTATRGN QIKAADLLGLNRNTLRKKIRELGVSVYRSSRPS" misc_feature 1345315..1346718 /gene="ntrC" /locus_tag="AGROH133_05949" /note="nitrogen regulation protein NR(I); Region: ntrC; TIGR01818" /db_xref="CDD:162545" misc_feature 1345318..1345656 /gene="ntrC" /locus_tag="AGROH133_05949" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1345327..1345332,1345459..1345461,1345483..1345485, 1345543..1345545,1345600..1345602,1345609..1345614) /gene="ntrC" /locus_tag="AGROH133_05949" /note="active site" /db_xref="CDD:29071" misc_feature 1345459..1345461 /gene="ntrC" /locus_tag="AGROH133_05949" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1345468..1345473,1345477..1345485) /gene="ntrC" /locus_tag="AGROH133_05949" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1345609..1345617 /gene="ntrC" /locus_tag="AGROH133_05949" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1345735..1346208 /gene="ntrC" /locus_tag="AGROH133_05949" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1345798..1345821 /gene="ntrC" /locus_tag="AGROH133_05949" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1345801..1345824,1346011..1346013,1346137..1346139) /gene="ntrC" /locus_tag="AGROH133_05949" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1345999..1346016 /gene="ntrC" /locus_tag="AGROH133_05949" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1346194..1346196 /gene="ntrC" /locus_tag="AGROH133_05949" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature <1346506..1346724 /gene="ntrC" /locus_tag="AGROH133_05949" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene 1346904..1349165 /gene="ntrY" /locus_tag="AGROH133_05951" /db_xref="GeneID:10267103" CDS 1346904..1349165 /gene="ntrY" /locus_tag="AGROH133_05951" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation" /codon_start=1 /transl_table=11 /product="nitrogen regulation protein NtrY" /protein_id="YP_004278641.1" /db_xref="GI:325292777" /db_xref="GeneID:10267103" /translation="MRKPAAEKAVAEDAAGMVVADRRMSFALPGLVLAGVALVCAILT LFVLLGVTPIAPTSNVVIASVVINSVFVIGLIFLIGREINRLLKARKKGRAAARLHVR IVVLFSIVAITPAVLVAIFASLTLNVGLDRWFALRTQSIVDSSSNIAQAYMMENAGYL QGQTLSMATDLDRNRALFYLDRTGFVDLMTRQAKGRGLLGAFLVQEDGDAVAQADIKT EKPLPAIPHDALEKAAAGQPTLIPPGITNLVGAIIKLEGISGTFLYTVRAVDPKVMGA MRLMEENRAEYKAMEAGRAPLQIAFAILYLGFALIVLLAAIWTAIAVADRIVRPIRLL ISAADSVATGNMHVLVPVRAIDGDVGRLSRTFNKMVSELRSQQEQIIEAKDDIDDRRR FIEAVLSGVTAAVIGIDENRRITIVNPSAEEFVALSSDQLIGAQLSDIAPEIEEVVTE ANTWSRGNFRKQINIMRRGTERTLNVQVTREDARDSRDSYVITLDDITDLVIAQRSTA WSDVARRIAHEIKNPLTPIQLSAERIKRRFGKQIDENDRAIFDQCTDTIVRQVGDIGR MVDEFSAFARMPKPTKEKSDLRSILKDAAFLREISAADTKFSTEFGDVPLEGMFDARM LGQAFGNLIKNATEAIEAVEGEKRPGKILVRASFDEANSRFVADIIDNGRGLPVENRH RILEPYMTMRDKGTGLGLAIVKKIIEEHGGYLELHDAPPEFDHGHGAMIRVLLPYIEA VGGKNNKEAAYGV" misc_feature 1347027..1349120 /gene="ntrY" /locus_tag="AGROH133_05951" /note="Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]; Region: NtrY; COG5000" /db_xref="CDD:34605" misc_feature 1347819..1348028 /gene="ntrY" /locus_tag="AGROH133_05951" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 1348077..1348256 /gene="ntrY" /locus_tag="AGROH133_05951" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 1348425..1348634 /gene="ntrY" /locus_tag="AGROH133_05951" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cl00080" /db_xref="CDD:153499" misc_feature 1348776..1349108 /gene="ntrY" /locus_tag="AGROH133_05951" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1348794..1348796,1348806..1348808,1348815..1348817, 1348908..1348910,1348914..1348916,1348920..1348922, 1348926..1348931,1348992..1349003,1349049..1349051, 1349055..1349057,1349085..1349090,1349094..1349096) /gene="ntrY" /locus_tag="AGROH133_05951" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1348806..1348808 /gene="ntrY" /locus_tag="AGROH133_05951" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1348920..1348922,1348926..1348928,1348992..1348994, 1348998..1349000) /gene="ntrY" /locus_tag="AGROH133_05951" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 1349155..1350519 /gene="ntrX" /locus_tag="AGROH133_05957" /db_xref="GeneID:10267104" CDS 1349155..1350519 /gene="ntrX" /locus_tag="AGROH133_05957" /note="RNA polymerase sigma factor 54, interaction; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains" /codon_start=1 /transl_table=11 /product="nitrogen assimilation regulatory protein NtrX" /protein_id="YP_004278642.1" /db_xref="GI:325292778" /db_xref="GeneID:10267104" /translation="MASDILVVDDEADIREIVAGILSDEGHETRMAFDSDSALAAISE RVPRLIFLDIWMQGSKLDGLALLDEIKSRHPDIPVVMISGHGNIETAVNAIKRGAFDF IEKPFKADRLILIAERALENSKLKREVQELKKRTGDAVELVGASLAVSQLRQTIDRVA PTNSRIMILGPSGSGKELVARMVHKKSSRATGPFVALNAATITPDRMEIALFGTEGLP GQPRKVGALEEAHRGVLYLDEVGEMPRETQNKILRVLVDQQFERVGGGKRVKVDVRII SSTAHHLESLIAEGQFREDLYHRLAVVPVKVPALSERREDIPFLVDMFMRQISEQAGI RPRKIGDDAMAVLQTHDWPGNIRQLRNNIERLMILARPEGGEAPISADMLPADIGDML PKISAQGDQHIMTLPLREAREMFERDYLVAQINRFGGNISRTAEFVGMERSALHRKLK SLGV" misc_feature 1349155..1350516 /gene="ntrX" /locus_tag="AGROH133_05957" /note="Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:32386" misc_feature 1349170..1349514 /gene="ntrX" /locus_tag="AGROH133_05957" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1349179..1349184,1349311..1349313,1349341..1349343, 1349401..1349403,1349458..1349460,1349467..1349472) /gene="ntrX" /locus_tag="AGROH133_05957" /note="active site" /db_xref="CDD:29071" misc_feature 1349311..1349313 /gene="ntrX" /locus_tag="AGROH133_05957" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1349320..1349325,1349335..1349343) /gene="ntrX" /locus_tag="AGROH133_05957" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1349467..1349475 /gene="ntrX" /locus_tag="AGROH133_05957" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 1349581..1350054 /gene="ntrX" /locus_tag="AGROH133_05957" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature 1349662..1349685 /gene="ntrX" /locus_tag="AGROH133_05957" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1349665..1349688,1349866..1349868,1350007..1350009) /gene="ntrX" /locus_tag="AGROH133_05957" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1349854..1349871 /gene="ntrX" /locus_tag="AGROH133_05957" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1350049..1350051 /gene="ntrX" /locus_tag="AGROH133_05957" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature 1350388..1350504 /gene="ntrX" /locus_tag="AGROH133_05957" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene 1350570..1351946 /gene="trkA" /locus_tag="AGROH133_05959" /db_xref="GeneID:10267105" CDS 1350570..1351946 /gene="trkA" /locus_tag="AGROH133_05959" /note="involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; K+ transport systems, NAD-binding component" /codon_start=1 /transl_table=11 /product="potassium transporter peripheral membrane component" /protein_id="YP_004278643.1" /db_xref="GI:325292779" /db_xref="GeneID:10267105" /translation="MKVIICGAGQVGYGIAEQLSREDNEVSVIDTSATLITAITETLD VRGYVGHGAHPDMLAKAGADQADMIIAVTLHDEINIVACEVAHALFSVPTKIARIRDQ SYLKPEYADLFSRENMSIDVTISPEVEVGQMVLRRIAFPGATDVVRFADDTVFMLAIE CMEDCPVINTPLQQLSNLFPDLIATVVGVYRNGILKVAHSSEQLRVGDLAYVICQRQH ARRTLGLFGHEEQEAQRIVIAGAGNIGHFVAQKIEELQPKTRVKIIEADRDRAIAASE QLSNTIVMHGSALDQKILLQADIQDADLIVTLTNSDQTNILAAVMAKQLGCKSNLALL NSSSFHEVADSLGLDAYINPRAVTISRVLQHVRKGRIRSVYAVQRGSAEVIEAEALET SPLVGQSFRDIDMPDGVRIGAIYRDGVVIRPDGSTKIKAKDRVVLFASADAVRDVEQL FRVSIQYF" misc_feature 1350570..1351934 /gene="trkA" /locus_tag="AGROH133_05959" /note="potassium transporter peripheral membrane component; Reviewed; Region: trkA; PRK09496" /db_xref="CDD:181909" misc_feature 1350576..1350947 /gene="trkA" /locus_tag="AGROH133_05959" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1351056..1351250 /gene="trkA" /locus_tag="AGROH133_05959" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" misc_feature 1351275..1351631 /gene="trkA" /locus_tag="AGROH133_05959" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature 1351719..1351925 /gene="trkA" /locus_tag="AGROH133_05959" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl09110" /db_xref="CDD:197433" gene 1352131..1352373 /gene="hfq" /locus_tag="AGROH133_05960" /db_xref="GeneID:10267106" CDS 1352131..1352373 /gene="hfq" /locus_tag="AGROH133_05960" /note="Stimulates the elongation of poly(A) tails; Uncharacterized host factor I protein" /codon_start=1 /transl_table=11 /product="RNA-binding protein Hfq" /protein_id="YP_004278644.1" /db_xref="GI:325292780" /db_xref="GeneID:10267106" /translation="MAERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFC VLLRRDGHSQLVYKHAISTIMPGQPMQMFESEEGAA" misc_feature 1352158..1352337 /gene="hfq" /locus_tag="AGROH133_05960" /note="Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that...; Region: Hfq; cd01716" /db_xref="CDD:99753" misc_feature order(1352197..1352217,1352221..1352274) /gene="hfq" /locus_tag="AGROH133_05960" /note="Sm1 motif; other site" /db_xref="CDD:99753" misc_feature order(1352209..1352220,1352251..1352253,1352284..1352286, 1352290..1352307,1352311..1352328) /gene="hfq" /locus_tag="AGROH133_05960" /note="intra - hexamer interaction site; other site" /db_xref="CDD:99753" misc_feature 1352221..1352226 /gene="hfq" /locus_tag="AGROH133_05960" /note="inter - hexamer interaction site [polypeptide binding]; other site" /db_xref="CDD:99753" misc_feature order(1352251..1352253,1352257..1352262,1352299..1352301) /gene="hfq" /locus_tag="AGROH133_05960" /note="nucleotide binding pocket [chemical binding]; other site" /db_xref="CDD:99753" misc_feature 1352287..1352322 /gene="hfq" /locus_tag="AGROH133_05960" /note="Sm2 motif; other site" /db_xref="CDD:99753" gene 1352467..1353906 /gene="hflX" /locus_tag="AGROH133_05962" /db_xref="GeneID:10267107" CDS 1352467..1353906 /gene="hflX" /locus_tag="AGROH133_05962" /EC_number="3.6.-.-" /note="GTP-binding protein, HSR1-related, GTPase of unknown function; GTPases" /codon_start=1 /transl_table=11 /product="GTP-binding protein HFLX" /protein_id="YP_004278645.1" /db_xref="GI:325292781" /db_xref="GeneID:10267107" /translation="MRSAAMSFLDKAEPITTRDTSNESIIPEQEKHRDDMRAVVIVPV LKQQRESRDAVAGPVSPVRSVEAKLEEAKGLALAIDLEVTQGLVVPVNQPRPATLFGT GKIEEIGHLLDETNSGLVIVDHPLTPVQQRNLEKQWNAKVIDRTGLILEIFGRRASTK EGTLQVDLAHLNYQKGRLVRSWTHLERQRGGAGFMGGPGETQIEADRRLLQDRIVKLE RELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLD PTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADLILHVRDMSDPDN AAQSADVLRILGDLGIDEKEAEKRIIEVWNKVDRLEPEAHDAIIERAEGRSDIRAVSA VTGEGVDALMDEISGRLSGVLTETTVVLSVEQLPLISWVYSNSIVDSREDNEDGSVSL DVRLSEAQATELERKLGKATIREREDWEQ" misc_feature <1352488..>1352895 /gene="hflX" /locus_tag="AGROH133_05962" /note="GTPases [General function prediction only]; Region: HflX; COG2262" /db_xref="CDD:32443" misc_feature 1352704..1353690 /gene="hflX" /locus_tag="AGROH133_05962" /note="GTP-binding protein HflX; Region: GTP_HflX; TIGR03156" /db_xref="CDD:163162" misc_feature 1353064..1353681 /gene="hflX" /locus_tag="AGROH133_05962" /note="HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual...; Region: HflX; cd01878" /db_xref="CDD:133279" misc_feature 1353205..1353228 /gene="hflX" /locus_tag="AGROH133_05962" /note="G1 box; other site" /db_xref="CDD:133279" misc_feature order(1353214..1353216,1353220..1353231,1353556..1353561, 1353565..1353567,1353637..1353645) /gene="hflX" /locus_tag="AGROH133_05962" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133279" misc_feature 1353268..1353309 /gene="hflX" /locus_tag="AGROH133_05962" /note="Switch I region; other site" /db_xref="CDD:133279" misc_feature 1353298..1353300 /gene="hflX" /locus_tag="AGROH133_05962" /note="G2 box; other site" /db_xref="CDD:133279" misc_feature 1353346..1353357 /gene="hflX" /locus_tag="AGROH133_05962" /note="G3 box; other site" /db_xref="CDD:133279" misc_feature 1353355..1353426 /gene="hflX" /locus_tag="AGROH133_05962" /note="Switch II region; other site" /db_xref="CDD:133279" misc_feature 1353556..1353567 /gene="hflX" /locus_tag="AGROH133_05962" /note="G4 box; other site" /db_xref="CDD:133279" misc_feature 1353637..1353645 /gene="hflX" /locus_tag="AGROH133_05962" /note="G5 box; other site" /db_xref="CDD:133279" gene complement(1354109..1354954) /gene="mazG" /locus_tag="AGROH133_05963" /db_xref="GeneID:10267108" CDS complement(1354109..1354954) /gene="mazG" /locus_tag="AGROH133_05963" /note="functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; Predicted pyrophosphatase" /codon_start=1 /transl_table=11 /product="nucleoside triphosphate pyrophosphohydrolase" /protein_id="YP_004278646.1" /db_xref="GI:325292782" /db_xref="GeneID:10267108" /translation="MEASKDISRLIEIMEALRQPETGCPWDVVQTFETIKPYTIEEAY EVADAIERKDMDDLCEELGDLLLQVVFHARIAEERGEFAFGDVVEAVTSKMIRRHPHV FAVSAANTPDSVKLQWDQIKAEEKRERAERRARRGITEDFKAGFLGGVQRSQPALTEA LKLQEQAARVGFDWSDPAPILDKIEEEIAELREALAEGKPEKVSDELGDLIFALVNIG RHVKADPEDALRGTNTKFRRRFNHIETSLTENGETLQEASLERMEDLWQAAKRIERSL DMVSS" misc_feature complement(1354130..1354954) /gene="mazG" /locus_tag="AGROH133_05963" /note="nucleoside triphosphate pyrophosphohydrolase; Reviewed; Region: mazG; PRK09562" /db_xref="CDD:181956" misc_feature complement(1354646..1354867) /gene="mazG" /locus_tag="AGROH133_05963" /note="MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345" /db_xref="CDD:193780" gene complement(1355019..1355651) /locus_tag="AGROH133_05964" /db_xref="GeneID:10267109" CDS complement(1355019..1355651) /locus_tag="AGROH133_05964" /EC_number="3.5.4.12" /note="CMP/dCMP deaminase, zinc-binding; Cytosine/adenosine deaminases" /codon_start=1 /transl_table=11 /product="deoxycytidylate deaminase family protein" /protein_id="YP_004278647.1" /db_xref="GI:325292783" /db_xref="GeneID:10267109" /translation="MQKPLHSEAVRRIRPLTSSTIATRLLDVIEHDILPLTTRGVSLG NKVFGAAILRKSDLSLVIAETNNELENPLWHGEVHALKRFYELGEKPNTKELIFLSTH EPCTMCMSAITWAGFDNFYSFFSHEDSRDAFAIPHDLKILKEVFGLEPGGYRRGNAFW NSFFIADLVETEDDPLKTELKAQTARIKAAYDELSTSYQSSKSGNDIPLN" misc_feature complement(1355268..1355537) /locus_tag="AGROH133_05964" /note="Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285" /db_xref="CDD:29828" misc_feature complement(order(1355328..1355330,1355337..1355339, 1355421..1355429,1355451..1355453,1355508..1355510)) /locus_tag="AGROH133_05964" /note="nucleoside/Zn binding site; other site" /db_xref="CDD:29828" misc_feature complement(order(1355307..1355312,1355319..1355324, 1355331..1355336,1355406..1355408,1355418..1355420, 1355433..1355435)) /locus_tag="AGROH133_05964" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29828" misc_feature complement(order(1355328..1355330,1355337..1355342, 1355421..1355429)) /locus_tag="AGROH133_05964" /note="catalytic motif [active]" /db_xref="CDD:29828" gene 1355869..1357332 /gene="cysG" /locus_tag="AGROH133_05965" /db_xref="GeneID:10267110" CDS 1355869..1357332 /gene="cysG" /locus_tag="AGROH133_05965" /EC_number="2.1.1.107" /EC_number="1.3.1.76" /note="Uroporphyrin-III C-methyltransferase, C-terminal, Tetrapyrrole (Corrin/Porphyrin) methylases; Uroporphyrinogen-III methylase" /codon_start=1 /transl_table=11 /product="uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase" /protein_id="YP_004278648.1" /db_xref="GI:325292784" /db_xref="GeneID:10267110" /translation="MHNEHDFSASGDRLSTFPAFFRVEGRHVAVFGNGDEAFAKVRLL ANTNAHIIAYADEPEADFARYISENGIDHRALSFASPLIEGATLVFAATGDEALDREI VLAARAKKIPANAVDQPEFCDFFTPALVARAPVAIAIGTEGAGPVLAQMIRARIDQML SPSLGKLARLAVQYRDAAEQNVPKGALRRNFWRRFFSGAVADAVALGDTSSARHAADR LLQSPERSEGRVWLVGAGPGAEDLLTLRAQRVLMEADVIVYDALVPQAIVDMGRRDAE RLSVGKRKGCHSKSQDEINRLLVRLGKDGKRVVRLKSGDPLVYGRAGEEMAALRDAGI GYEIVPGITSAFAAAADFELPLTLRGVASSLIFTTGHDLTGDVLPDWARLAVSGATIA VYMGRSVAASVATRLIQAGLGVETTVAVIENASRADRRLLHGTLNDLPDLEHRDELTG PVMVIIGDAVAGANFDRSEALALVARPANLKREYANG" misc_feature 1355911..1356375 /gene="cysG" /locus_tag="AGROH133_05965" /note="precorrin-2 dehydrogenase; Validated; Region: PRK06719" /db_xref="CDD:180668" misc_feature 1355917..1357251 /gene="cysG" /locus_tag="AGROH133_05965" /note="siroheme synthase; Provisional; Region: cysG; PRK10637" /db_xref="CDD:182606" misc_feature 1356352..1356531 /gene="cysG" /locus_tag="AGROH133_05965" /note="Sirohaem synthase dimerisation region; Region: CysG_dimeriser; pfam10414" /db_xref="CDD:150995" misc_feature 1356553..1357257 /gene="cysG" /locus_tag="AGROH133_05965" /note="Tetrapyrrole (Corrin/Porphyrin) Methylases; Region: TP_methylase; cl00304" /db_xref="CDD:197405" gene 1357325..1357639 /locus_tag="AGROH133_05966" /db_xref="GeneID:10267111" CDS 1357325..1357639 /locus_tag="AGROH133_05966" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278649.1" /db_xref="GI:325292785" /db_xref="GeneID:10267111" /translation="MADKVLTANRLGDGIAVWLDANGEWTENLQDAIVARHAEAVASF EEIGKRDFSANKVVDVNVIDVVEENGKLWPTRLRERIRAAGPTMHYANGFKPADAAFI AV" misc_feature 1357334..1357594 /locus_tag="AGROH133_05966" /note="Protein of unknown function (DUF2849); Region: DUF2849; pfam11011" /db_xref="CDD:151458" gene 1357648..1359318 /gene="cysI" /locus_tag="AGROH133_05967" /db_xref="GeneID:10267112" CDS 1357648..1359318 /gene="cysI" /locus_tag="AGROH133_05967" /EC_number="1.8.1.2" /note="Nitrite and sulphite reductase 4Fe-4S domain; Sulfite reductase, beta subunit (hemoprotein)" /codon_start=1 /transl_table=11 /product="sulfite reductase NADPH hemoprotein beta-component" /protein_id="YP_004278650.1" /db_xref="GI:325292786" /db_xref="GeneID:10267112" /translation="MYRYDEFDHAFVEGRVAQFRDQVERRLSGELAEDAFKPLRLMNG VYLQLHAYMLRVAIPYGTLNSQQMRMLAHIARKYDRGYGHFTTRQNIQYNWPRLSDTP DILSELASVEMHALQTSGNCIRNVTADHFAGAAADEVADPRPYAEILRQWSSVHPEFS FLPRKFKIAVTGAERDRAAIQVHDIGLHLKKNDKGEIGFAVYVGGGQGRTPMIAKKIR DFLPEEDLLSYTTAVMRVYNLHGRRDNKYKARIKILVHETGAEELARQVEVEFAELKN TELKLPDADIAAITAYFAPPALKDRPEGWESLARWKRADEGFARFVEQNVQPHKHPDY GMVTISLKPIGGIPGDATDEQMELVADIAAEYAFDEIRISHEQNIILPHVALADLEPV YRALVGAGLATANAGLITDIIACPGLDYCALANARSIPVAQEISTRFGAPERQAEIGE LKIKISGCINACGHHHVGHIGLLGVEKKGAELYQITLGGSGDENTSIGEIIGRGFEPE KVTDAVETIVDTYLGLRLSKEETFLEAYRRVGPQPFKDALYGSAAEAA" misc_feature 1357648..1359288 /gene="cysI" /locus_tag="AGROH133_05967" /note="Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]; Region: CysI; COG0155" /db_xref="CDD:30504" misc_feature 1357801..1357980 /gene="cysI" /locus_tag="AGROH133_05967" /note="Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460" /db_xref="CDD:190643" misc_feature 1358629..1358835 /gene="cysI" /locus_tag="AGROH133_05967" /note="Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460" /db_xref="CDD:190643" gene 1359329..1359835 /locus_tag="AGROH133_05968" /db_xref="GeneID:10267113" CDS 1359329..1359835 /locus_tag="AGROH133_05968" /note="Bacterial protein of unknown function (DUF934); Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278651.1" /db_xref="GI:325292787" /db_xref="GeneID:10267113" /translation="MTKIWNRDGFVENDPWVIETEEVKATAEQKSVLPLADFLVRAAE SNDVGLGVLIAPADDVTRLEPYLDRIDLVAISFPAFNDGRGFSHASLLRSRLDFAGEV RAVGDVLIDQVPLMLRTGFTSFAVTNETAIRRLSENRLPEIPVYYQPTALSANGGEAY SWRRRAAQ" misc_feature 1359329..1359829 /locus_tag="AGROH133_05968" /note="Bacterial protein of unknown function (DUF934); Region: DUF934; cl01526" /db_xref="CDD:194157" gene 1359982..1360794 /gene="mvrA" /locus_tag="AGROH133_05969" /db_xref="GeneID:10267114" CDS 1359982..1360794 /gene="mvrA" /locus_tag="AGROH133_05969" /EC_number="1.18.1.2" /note="Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" /codon_start=1 /transl_table=11 /product="ferredoxin NADP+ reductase" /protein_id="YP_004278652.1" /db_xref="GI:325292788" /db_xref="GeneID:10267114" /translation="MNAPAKTEDFAIKIPDGVYAETVLSVEHYTDHLFRFRMTRPAGF RFRSGEFAMIGLMVGEKPIYRAYSIASPAWDEELEFFSIKVPDGPLTSHLQAIKPGDT VLMRKKPTGTLVLDALTPGRRLYMFSTGTGIAPFASLIRDPETYEKFEEVILTHTCRD VAELKYGFDLVEEIRNHEFLNEIVGDKLKHYATVTREDYPFKGRITSLIENGKLFADL GVPALDPAIDRGMICGSSAMLKDTKELLEKAGLNEGANNKPAEFVIERAFVG" misc_feature 1360024..1360785 /gene="mvrA" /locus_tag="AGROH133_05969" /note="Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018" /db_xref="CDD:31221" misc_feature 1360045..1360782 /gene="mvrA" /locus_tag="AGROH133_05969" /note="Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently...; Region: FNR1; cd06195" /db_xref="CDD:99792" misc_feature order(1360132..1360134,1360174..1360185,1360222..1360224, 1360228..1360230,1360234..1360236,1360243..1360245, 1360249..1360254,1360372..1360374,1360780..1360782) /gene="mvrA" /locus_tag="AGROH133_05969" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99792" misc_feature order(1360174..1360176,1360180..1360185) /gene="mvrA" /locus_tag="AGROH133_05969" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99792" misc_feature order(1360243..1360245,1360252..1360254,1360261..1360263, 1360279..1360281,1360306..1360308,1360312..1360314) /gene="mvrA" /locus_tag="AGROH133_05969" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99792" misc_feature order(1360357..1360359,1360369..1360380,1360384..1360386) /gene="mvrA" /locus_tag="AGROH133_05969" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99792" misc_feature order(1360372..1360377,1360450..1360458,1360681..1360686) /gene="mvrA" /locus_tag="AGROH133_05969" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99792" gene complement(1360855..1362132) /locus_tag="AGROH133_05970" /db_xref="GeneID:10267115" CDS complement(1360855..1362132) /locus_tag="AGROH133_05970" /note="Major facilitator superfamily MFS-1; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="YP_004278653.1" /db_xref="GI:325292789" /db_xref="GeneID:10267115" /translation="MTTIGVLAPRGSLPSGGLPRSGGMSDRTLFALAALNFFLADARD GLGPFLDAFLATQGWSSLSLGMIATVGGLVGLLATPLCGALVDGTTWKRTLIAIPVVL VTVGALITLIFPDAWIVWTGQIMTAVVGAVVGPALAGLTLGLVGERLFSRQISRNEFW NHGGNFASLFATYVAVSFFGLHGVIGLMLLTAAGALVAAAAIDPDRIDHKVARGLGED KGEPGPSGINVLLHERGLIFLAIILLIFHFGNAPMGRLIAQNFAIELQTPFRTTAIIT GVAQFAMIFVAALAPWLIRRFGLATVFLIALAALPIRGLLASAFTDFWVIFPVQLLDG IGAGLLGIVTPVAAERILKGTGRFNVGLASVMMVQGIGASLSNVVAGWLVTKGGYALS HLVGGGISAIAIALFFIYRNEIAPKQADEALPQ" misc_feature complement(<1360882..1361367) /locus_tag="AGROH133_05970" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" gene 1362328..1362831 /locus_tag="AGROH133_05982" /db_xref="GeneID:10267116" CDS 1362328..1362831 /locus_tag="AGROH133_05982" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278654.1" /db_xref="GI:325292790" /db_xref="GeneID:10267116" /translation="MKTTAITSLFFAGLLGVQPALADEREFLSSLKGTWAGKGTVITR IGTPPINVNCTLNSKAGTSSLNMSGTCRGLLVVRRAIAADLSEKGGRYSGAYTGPSGR PSALSGTRQGNAINLTVRWNRDINGDRVAAMTIEKVGQNGLRLRTTDKDGRTGKTVVT SDIRLVR" gene complement(1362877..1363680) /locus_tag="AGROH133_05984" /db_xref="GeneID:10267117" CDS complement(1362877..1363680) /locus_tag="AGROH133_05984" /note="Endonuclease/Exonuclease/phosphatase family; Exonuclease III" /codon_start=1 /transl_table=11 /product="endonuclease/exonuclease/phosphatase family protein" /protein_id="YP_004278655.1" /db_xref="GI:325292791" /db_xref="GeneID:10267117" /translation="MRLICLNGWGGKLHDELVPYISASDPDILCLQEVVHTPAAEEDW LSYRDDGRDLPQRANFLRDVEEALPDHLAIFCPASQGDLWHGETRYPSQWGLATFVRK SIAIVAQAQGFVHGCFSANGYGDHPRSRTGHAVRVFDFTTGQPAVIAHMHGLRDPNGK HDIPARLMQAKRLVKLVKDIAEDGDRIIVCGDFNVLPESDTFTVLKELDLIELVTTRG FTDTRTSHYAKQNRFADYMLVNPVVQVDHFDVVRQPEVSDHCPLLIEFS" misc_feature complement(<1363579..1363680) /locus_tag="AGROH133_05984" /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490" /db_xref="CDD:197411" misc_feature complement(1362883..1363620) /locus_tag="AGROH133_05984" /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490" /db_xref="CDD:197411" misc_feature complement(order(1362904..1362909,1362976..1362978, 1363099..1363101,1363105..1363107,1363231..1363233, 1363582..1363584)) /locus_tag="AGROH133_05984" /note="putative catalytic site [active]" /db_xref="CDD:197306" misc_feature complement(order(1362907..1362909,1363582..1363584)) /locus_tag="AGROH133_05984" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197306" misc_feature complement(1363582..1363584) /locus_tag="AGROH133_05984" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197306" misc_feature complement(order(1362904..1362906,1363099..1363101, 1363231..1363233)) /locus_tag="AGROH133_05984" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197306" gene complement(1363840..1366704) /gene="gcvP" /locus_tag="AGROH133_05985" /db_xref="GeneID:10267118" CDS complement(1363840..1366704) /gene="gcvP" /locus_tag="AGROH133_05985" /EC_number="1.4.4.2" /note="acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine cleavage system protein P (pyridoxal- binding), C-terminal domain" /codon_start=1 /transl_table=11 /product="glycine dehydrogenase" /protein_id="YP_004278656.1" /db_xref="GI:325292792" /db_xref="GeneID:10267118" /translation="MTTPTEFHFTDYQPYDFANRRHIGPSPSEMAEMLKVIGYKSLDA LIDATVPSSIRQKVPLTWGAALTEREALDRLRETANKNQVLTSLIGQGYYGTITPPVI QRNILENPAWYTAYTPYQPEISQGRLEALLNYQTMVCDLTGLDVANASLLDEATAAAE AMAMCQRVAKSKATAFFVDANCHPQTIALIETRAAPLGWKVIVGNPFTDLDPVDVFGA IFQYPGTHGHVSDFSGLISRLHQTGAIAAVAADLLALTLLKSPGEMGADIAIGTSQRF GVPVGYGGPHAAYMSVKDAHKRSMPGRLVGVSVDARGNRAYRLSLQTREQHIRREKAT SNICTAQVLLAVMASMYGVFHGPQGIKAIAQQTHQKAVLMAKGLEKLGYVIEPETFFD TITVEVGHMQGVILRSAVAEGVNLRKVGATKIGMSLDERTRPATLEAVWRAFGGNFSI SDFELEYRLPKELLRTSQYMTHPIFHMNRAESEMTRYIRRLSDRDLALDRSMIPLGSC TMKLNATAEMLPITWPEFSDIHPFVPANQALGYKEMIDDLSEKLCSVTGYDAFSMQPN SGAQGEYAGLLTIRNYHIANGGAHRDVCLIPTSAHGTNPASAQMVGMKVVPVKVRENG DIDIDDFRAKAEQYAQNLSCCMITYPSTHGVFEETVREICEITHKHGGQVYLDGANMN AMVGLARPGDIGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPYLPGHPTTDGRE GAVSAAPFGSPSILPISWSYCLMMGGEGLTQATKVAILNANYIAERLKGAYDVLYKSE TGRVAHECIIDTRPLADSCGVTVDDVAKRLVDCGFHAPTMSWPVAGTLMIEPTESETK AEIDRFCDAMLAIREEARDIEEGRADKTNNPLKNAPHTVEDLVGEWDRPYSREQGCFP PGAFRIDKYWSPVNRIDNVYGDRNLICTCPPMEAYAEAAE" misc_feature complement(1363855..1366671) /gene="gcvP" /locus_tag="AGROH133_05985" /note="glycine dehydrogenase; Provisional; Region: PRK05367" /db_xref="CDD:180041" misc_feature complement(1365373..1366503) /gene="gcvP" /locus_tag="AGROH133_05985" /note="Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2...; Region: GDC-P; cd00613" /db_xref="CDD:99737" misc_feature complement(order(1365400..1365405,1365412..1365417, 1365481..1365483,1365538..1365540,1365565..1365567, 1365589..1365591,1365595..1365597,1365610..1365612, 1365619..1365621,1365643..1365648,1365658..1365660, 1365676..1365684,1365850..1365870,1365883..1365885, 1366018..1366020,1366096..1366098,1366129..1366134, 1366138..1366143,1366150..1366161,1366201..1366203, 1366231..1366236,1366318..1366320,1366324..1366332, 1366339..1366341,1366345..1366353,1366357..1366365, 1366387..1366389,1366396..1366398,1366405..1366419, 1366423..1366425,1366429..1366431,1366459..1366473, 1366480..1366488,1366498..1366503)) /gene="gcvP" /locus_tag="AGROH133_05985" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:99737" misc_feature complement(order(1365880..1365885,1365889..1365891, 1365958..1365960,1366150..1366152,1366156..1366158, 1366225..1366227,1366234..1366239,1366432..1366434)) /gene="gcvP" /locus_tag="AGROH133_05985" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99737" misc_feature complement(1365880..1365882) /gene="gcvP" /locus_tag="AGROH133_05985" /note="catalytic residue [active]" /db_xref="CDD:99737" misc_feature complement(1364107..1365264) /gene="gcvP" /locus_tag="AGROH133_05985" /note="Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2...; Region: GDC-P; cd00613" /db_xref="CDD:99737" misc_feature complement(order(1364134..1364139,1364146..1364151, 1364227..1364229,1364302..1364304,1364338..1364340, 1364362..1364364,1364368..1364370,1364383..1364385, 1364392..1364394,1364416..1364421,1364431..1364433, 1364449..1364457,1364560..1364580,1364596..1364598, 1364737..1364739,1364854..1364856,1364875..1364880, 1364884..1364889,1364896..1364907,1364965..1364967, 1364995..1365000,1365076..1365078,1365082..1365090, 1365097..1365099,1365103..1365111,1365115..1365123, 1365139..1365141,1365148..1365150,1365157..1365171, 1365175..1365177,1365181..1365183,1365220..1365234, 1365241..1365249,1365259..1365264)) /gene="gcvP" /locus_tag="AGROH133_05985" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:99737" misc_feature complement(order(1364593..1364598,1364602..1364604, 1364674..1364676,1364896..1364898,1364902..1364904, 1364989..1364991,1364998..1365003,1365184..1365186)) /gene="gcvP" /locus_tag="AGROH133_05985" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99737" misc_feature complement(1364593..1364595) /gene="gcvP" /locus_tag="AGROH133_05985" /note="catalytic residue [active]" /db_xref="CDD:99737" gene complement(1366704..1367066) /gene="gcvH" /locus_tag="AGROH133_05986" /db_xref="GeneID:10267119" CDS complement(1366704..1367066) /gene="gcvH" /locus_tag="AGROH133_05986" /note="part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system H protein (lipoate- binding)" /codon_start=1 /transl_table=11 /product="glycine cleavage system protein H" /protein_id="YP_004278657.1" /db_xref="GI:325292793" /db_xref="GeneID:10267119" /translation="MLKFTAEHEWLKFDGDIATVGITSHAAEQLGDLVFVELPEVGAT FSKNGDAATVESVKAASDVYCPLDGEVVEINQAIVDDPSLVNSDPQGAGWFFKLKLSN AADADTLLDEAAYKELIA" misc_feature complement(1366773..1367057) /gene="gcvH" /locus_tag="AGROH133_05986" /note="Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-...; Region: GCS_H; cd06848" /db_xref="CDD:133457" misc_feature complement(1366893..1366895) /gene="gcvH" /locus_tag="AGROH133_05986" /note="lipoyl attachment site [posttranslational modification]; other site" /db_xref="CDD:133457" gene complement(1367095..1368234) /gene="gcvT" /locus_tag="AGROH133_05987" /db_xref="GeneID:10267120" CDS complement(1367095..1368234) /gene="gcvT" /locus_tag="AGROH133_05987" /EC_number="2.1.2.10" /note="catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system T protein (aminomethyltransferase)" /codon_start=1 /transl_table=11 /product="glycine cleavage system protein T2" /protein_id="YP_004278658.1" /db_xref="GI:325292794" /db_xref="GeneID:10267120" /translation="MDDTAELKITPLHSLHVSLGARMVPFAGYDMPVQYPAGVLKEHL QTRTSAGLFDVSHMGQVIVKAKSGNNADAAIALEKLVPVDILGLKEGRQRYGFFTDEN GCILDDLMITNRGDHLFVVVNAACKDADVAHMKAHLSDTCDITLLDDRALIALQGPRA EAVLAELWAGVSEMKFMDVLEVPLHDVPCIVSRSGYSGEDGFEISVPAEKAEEIAKAL LEHPDCEPIGLGARDSLRLEAGLCLYGNDIDTTTSPIEASLEWAIQKARRAGGDREGG FPGAERILGELKDGTSRRRVGLKPEGKAPVRGHSKLFADAEGKTEIGEVTSGGFGPSV EGPVAMGYVPAAYTAPGTAIFAEVRGKYLPVTVAALPFIKPTYKR" misc_feature complement(1367098..1368234) /gene="gcvT" /locus_tag="AGROH133_05987" /note="glycine cleavage system aminomethyltransferase T; Provisional; Region: gcvT; PRK13579" /db_xref="CDD:184160" misc_feature complement(1367125..1367412) /gene="gcvT" /locus_tag="AGROH133_05987" /note="Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669" /db_xref="CDD:192119" gene complement(1368601..1368786) /locus_tag="AGROH133_05988" /db_xref="GeneID:10267121" CDS complement(1368601..1368786) /locus_tag="AGROH133_05988" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278659.1" /db_xref="GI:325292795" /db_xref="GeneID:10267121" /translation="MPAKSKAQQKAAGAALAAKRGEVKKSSLQGASKSMEKSMTEKEL DELASTKRKGLPEKKSD" misc_feature complement(1368607..>1368729) /locus_tag="AGROH133_05988" /note="Protein of unknwon function (DUF3008); Region: DUF3008; pfam11450" /db_xref="CDD:151889" gene 1368918..1369340 /locus_tag="AGROH133_05989" /db_xref="GeneID:10267122" CDS 1368918..1369340 /locus_tag="AGROH133_05989" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278660.1" /db_xref="GI:325292796" /db_xref="GeneID:10267122" /translation="MDANRKRPLTRVEKMLRIFCALLMLSLGFAHKPALAAAPAVLLD ESYRLPDGTFAEICLGHSGGVNASHPNDGPAHSSDAILFCEACLLASSILLPVPDAAG WLRTEFAWLDNRLTAEWGFHSVQTIRKPTARGPPSLSA" gene 1369429..1370418 /locus_tag="AGROH133_05992" /db_xref="GeneID:10267123" CDS 1369429..1370418 /locus_tag="AGROH133_05992" /note="Protein of unknown function DUF461; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278661.1" /db_xref="GI:325292797" /db_xref="GeneID:10267123" /translation="MKTTKIITCTLFVASVSTAQAFAHTTFVDGSAEQESTIVAALQV PHGCDGGLATTEVQIKLPEGFITAKPQPKAGWDLEVIKGDYQKAYKNHGKDIKSGAVE IRWKGGNLPDEFYDTFAVQGKISGIEAGQDLPFKVTQLCGDKGKVSWDEVVAAGVDPH SLKSPAPTIRVTAKAHAGGHDHSAMAMDMDMDVVKAGSLELSAGATKAMLPGQPVGGG YVTIKNTGSSDDKLIGVESSAAGRAEIHEMAMVNDVMKMRKLDDGIVIPAGETVELKP GGLHMMFFNVKKPFAEGDKVPVTLIFEKAGKVEIVLSAGSAKVGDDKNAHQHN" misc_feature 1369489..1369953 /locus_tag="AGROH133_05992" /note="Reeler-like domain of YcnI and similar proteins; Region: YcnI_like; cd08545" /db_xref="CDD:176097" misc_feature 1370047..1370358 /locus_tag="AGROH133_05992" /note="Protein of unknown function (DUF461); Region: DUF461; cl01071" /db_xref="CDD:194027" gene complement(1370481..1370909) /gene="copC" /locus_tag="AGROH133_05994" /db_xref="GeneID:10267124" CDS complement(1370481..1370909) /gene="copC" /locus_tag="AGROH133_05994" /note="Cupredoxin; Uncharacterized copper-binding protein" /codon_start=1 /transl_table=11 /product="copper tolerance protein" /protein_id="YP_004278662.1" /db_xref="GI:325292798" /db_xref="GeneID:10267124" /translation="MISIARHVAATTIALLVSAPAFAATTIKVTEGGEGGGPMTLVMD QTTVKAGEAVFHVHNDAMSEQHEMVLVKLKSADEKIPLNTAKHRVDEKQLKSLGEVAD LKPGCDGQLKAKLTPGTYLLLCNIKGHYEAGMQAKLTVTK" misc_feature complement(1370484..1370903) /gene="copC" /locus_tag="AGROH133_05994" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" gene complement(1371029..1371334) /locus_tag="AGROH133_05996" /db_xref="GeneID:10267125" CDS complement(1371029..1371334) /locus_tag="AGROH133_05996" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278663.1" /db_xref="GI:325292799" /db_xref="GeneID:10267125" /translation="MAGGWMTQVLSVSANTAAYALEAVKPSQRVSRRSEVEEAIHELA RKAEQGDDFQLRALLTAIKPPALTLYFLTNASQRHAPQTTLDQAVQAYEENQSNKNL" gene 1371522..1371899 /gene="crcB" /locus_tag="AGROH133_05997" /db_xref="GeneID:10267126" CDS 1371522..1371899 /gene="crcB" /locus_tag="AGROH133_05997" /note="Camphor resistance CrcB protein; Integral membrane protein possibly involved in chromosome condensation" /codon_start=1 /transl_table=11 /product="camphor resistance protein" /protein_id="YP_004278664.1" /db_xref="GI:325292800" /db_xref="GeneID:10267126" /translation="MLNIALVAAGGAIGSVFRYLVGLLSVRLVGMTFPWGTLAVNVVG SFLIGFLVELVARRLNASMEMRLFLVTGVLGGFTTFSSFSLDAVALFERGALGLSAVY ITASLVVSIAAVFAGLALGRSLF" misc_feature 1371522..1371896 /gene="crcB" /locus_tag="AGROH133_05997" /note="CrcB-like protein; Region: CRCB; cl09114" /db_xref="CDD:195794" gene 1371966..1372955 /gene="rluC" /locus_tag="AGROH133_06002" /db_xref="GeneID:10267127" CDS 1371966..1372955 /gene="rluC" /locus_tag="AGROH133_06002" /EC_number="4.2.1.70" /note="RNA pseudouridylate synthase; Pseudouridylate synthases, 23S RNA-specific" /codon_start=1 /transl_table=11 /product="ribosomal large subunit pseudouridine synthase C" /protein_id="YP_004278665.1" /db_xref="GI:325292801" /db_xref="GeneID:10267127" /translation="MAGIEHIKVEADEAGMRLDRWFKIHYPGLGFGQLQKLLRSGQVR VDGGRVKTDARVQPGQMVRVPPVDSDLKVKSGPIGSRDLKHSADGELLARMLLHEDDK VLVFNKPAGIAVQGGSGVNRHIDGLLEAWTSPKGEKPRLVHRLDRDTSGVLVVARTRG AAQKLTAAFRERDTKKTYWALVRGVPRKHQDKISTWLVKEQTPDGDRMRIAKHGEEGA DHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALHMGHPIIGDPKYYIDDPNWDF PGGVQKRLHLHARHIDIPHPNGGRLRVSAPLPPHMVQTWNLLGLDVADGDREG" misc_feature 1371984..1372892 /gene="rluC" /locus_tag="AGROH133_06002" /note="Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564" /db_xref="CDD:30910" misc_feature 1372272..1372844 /gene="rluC" /locus_tag="AGROH133_06002" /note="PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF...; Region: PseudoU_synth_RluCD_like; cd02869" /db_xref="CDD:30029" misc_feature order(1372392..1372403,1372716..1372718) /gene="rluC" /locus_tag="AGROH133_06002" /note="active site" /db_xref="CDD:30029" gene 1372962..1373630 /locus_tag="AGROH133_06003" /db_xref="GeneID:10267128" CDS 1372962..1373630 /locus_tag="AGROH133_06003" /EC_number="3.1.3.18" /note="haloacid dehalogenase-like hydrolase; Predicted phosphatases" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="YP_004278666.1" /db_xref="GI:325292802" /db_xref="GeneID:10267128" /translation="MKLVLFDCDGTLVDSAGLIHAVMVDTFADFGKPRPDIAQTKAII GLTLDIAIARMLGKAHVDDEVRAMTERYREIYHPIRARPGMIEPLFDGIAPLIDTLAR RDEVLIGAVTGKGRRGLTHILETHGFAEHFIVSRTADDCPSKPHPAMVMECCHETGMV PADTVVIGDAIYDMQMAKAAGAKAIGVAWGYASVDDLWKAGADAVVSHPSEIPAHVPA DILE" misc_feature 1372962..1373618 /locus_tag="AGROH133_06003" /note="Predicted phosphatases [General function prediction only]; Region: Gph; COG0546" /db_xref="CDD:30892" misc_feature 1372971..>1373054 /locus_tag="AGROH133_06003" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature 1373226..1373489 /locus_tag="AGROH133_06003" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature 1373295..1373297 /locus_tag="AGROH133_06003" /note="motif II; other site" /db_xref="CDD:119389" gene 1373661..1374455 /locus_tag="AGROH133_06004" /db_xref="GeneID:10267129" CDS 1373661..1374455 /locus_tag="AGROH133_06004" /note="ATP12 chaperone protein; Chaperone required for the assembly of the mitochondrial F1-ATPase" /codon_start=1 /transl_table=11 /product="ATP12 ATPase" /protein_id="YP_004278667.1" /db_xref="GI:325292803" /db_xref="GeneID:10267129" /translation="MRDLLNDLSEGLSHPDPILRAQIQMQRPLPKRFYKDVTVADVED GGFTIHLDGKPLRTPAKKPLVLPSKALADLLRDEWDAQKEVVNPVVMPVSRHVNTAID GIASDTQAVFEDILRFSSSDLLCYRAGQPEALVARQADHWDPVIDWAANVLGARFILV EGVMHRDQPREAVAAFAVTLKKYDTPIALAALHTMTSLTGSAILALALAEGQLTLEET WALAHLDEDWTAEHWGEDEEALERRATRLIDMRAALNVLEALKSAP" misc_feature 1373661..1374446 /locus_tag="AGROH133_06004" /note="ATP12 chaperone protein; Region: ATP12; cl02228" /db_xref="CDD:194281" gene 1374516..1375004 /locus_tag="AGROH133_06005" /db_xref="GeneID:10267130" CDS 1374516..1375004 /locus_tag="AGROH133_06005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278668.1" /db_xref="GI:325292804" /db_xref="GeneID:10267130" /translation="MNTRLKRLGIVVLACFTLMSFRLEPEATNADRLLYDVRGAFVAA RPDVAPALMQSIHAQLQNAIKTTARGEIRPRVVLTIRLASVTRGPFLFGERASARVIV RAAAVATGEVIAEAKFTATVVSFDNQSIEQDLAYGVAERVIREFRLSRPGPTTLATAL FP" gene complement(1375029..1375622) /locus_tag="AGROH133_06007" /db_xref="GeneID:10267131" CDS complement(1375029..1375622) /locus_tag="AGROH133_06007" /note="Bacterial regulatory proteins, tetR family; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_004278669.1" /db_xref="GI:325292805" /db_xref="GeneID:10267131" /translation="MAKRRAETMEENRVKLIAAARKIFAEKGYSSASMDELTAQVGLT RGALYHNFGDKRGLLAAVVDQIDSEMASRAQEIGALAEDDWQGLLAEGAAYIEMALDP EVQRIVLLDGPAVLGDPSQWPSQSSCLQTTKGTVQSLIEQGVIKSVDAEAAARLLSGA ALNAALWIAASDDPVRVLPKAVEAFQSMATGLLVKPV" misc_feature complement(<1375278..1375622) /locus_tag="AGROH133_06007" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(1375437..1375577) /locus_tag="AGROH133_06007" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1375788..1376186 /locus_tag="AGROH133_06008" /db_xref="GeneID:10267132" CDS 1375788..1376186 /locus_tag="AGROH133_06008" /note="Endoribonuclease L-PSP/chorismate mutase-like; Putative translation initiation inhibitor, yjgF family" /codon_start=1 /transl_table=11 /product="translation initiation inhibitor protein" /protein_id="YP_004278670.1" /db_xref="GI:325292806" /db_xref="GeneID:10267132" /translation="MAKREAIFPANRHALYEEHGYSAAIRSGDLLFVSGQVGSLSDGT PEPDFERQVQLAFENLKATLHAAGCTFDDIVDVTTFHTDPEKQFGTIMAVKQQIFSTK PYPNWTAIGVNWLAGFDFEIKVIARIPLDA" misc_feature 1375842..1376171 /locus_tag="AGROH133_06008" /note="YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgH_like; cd02198" /db_xref="CDD:100005" misc_feature order(1375848..1375853,1375860..1375862,1375866..1375868, 1375875..1375877,1375881..1375883,1375887..1375892, 1376004..1376006,1376010..1376015,1376019..1376021, 1376025..1376027,1376061..1376063,1376070..1376072, 1376082..1376084,1376097..1376123,1376148..1376150, 1376154..1376156,1376160..1376162) /locus_tag="AGROH133_06008" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100005" misc_feature order(1375848..1375850,1376049..1376051,1376061..1376063, 1376106..1376108,1376148..1376150) /locus_tag="AGROH133_06008" /note="putative active site [active]" /db_xref="CDD:100005" gene complement(1376295..1377128) /locus_tag="AGROH133_06009" /db_xref="GeneID:10267133" CDS complement(1376295..1377128) /locus_tag="AGROH133_06009" /EC_number="3.1.1.-" /note="S-formylglutathione hydrolase, esterase; Predicted esterase" /codon_start=1 /transl_table=11 /product="esterase D" /protein_id="YP_004278671.1" /db_xref="GI:325292807" /db_xref="GeneID:10267133" /translation="MNIISQNTAFGGMQGVFSHPSETLKCEMTFAVYVPPKAISEPCP VLWYLSGLTCTHANVMEKGEYRRMASELGLIIVCPDTSPRGNDVPDEVTNWQMGKGAG FYLDATQEPWSEHYHMYSYLTEELPAFIGQHFRADMSRQGIFGHSMGGHGAMTIALKN PDRFKSCSAFAPIVAPSSADWSEPALEKYLGTDRAAWRQYDACSLVEDGARFPEFLID QGKADSFLEKGLRPWLFEEAIKGTDIGLTLRMHERYDHSYYFISSFMDDHLKWHAERL G" misc_feature complement(1376298..1377128) /locus_tag="AGROH133_06009" /note="Predicted esterase [General function prediction only]; Region: COG0627" /db_xref="CDD:30972" misc_feature complement(1376301..1377122) /locus_tag="AGROH133_06009" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(1377162..1377821) /locus_tag="AGROH133_06010" /db_xref="GeneID:10267134" CDS complement(1377162..1377821) /locus_tag="AGROH133_06010" /note="Protein of unknown function DUF1345; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278672.1" /db_xref="GI:325292808" /db_xref="GeneID:10267134" /translation="MTPANPQSNTYSRHKPFFVALFVGAFGLGLALAFARPLAIEIAA ILFFLTYLGLVAFRLPKLTAQHLKAHADSDDLPAMAIIAITLIAATVAVVSLFQALNH SGETVWTLLLAFGSVIFGWLTIHTMTALHYAHLYWRPETVDGKRKHRGGMDFPATKEP CGYDFLYFAVVIGMTAQTSDVAVTTTPMRKVTLLHSIVSFFFNTVLVAAAVNAAVALA G" misc_feature complement(1377210..1377821) /locus_tag="AGROH133_06010" /note="Protein of unknown function (DUF1345); Region: DUF1345; cl01753" /db_xref="CDD:154573" gene complement(1377847..1378302) /locus_tag="AGROH133_06018" /db_xref="GeneID:10267135" CDS complement(1377847..1378302) /locus_tag="AGROH133_06018" /note="Protein of unknown function DUF188, Uncharacterized BCR, YaiI/YqxD family COG1671; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278673.1" /db_xref="GI:325292809" /db_xref="GeneID:10267135" /translation="MSQTPQIYVDADACPVKPEILKVAERHGLEVTFVANSGLRPSRD PMVKNVIVSAGFDAADDWIAERAGENDIVITADVPLAGRCVARGALVTGPTGRVFDQT NIGMATAMRDLGAHLRETGESKGYNAAFSPRDRSAFLETLDRFCRRVKK" misc_feature complement(1377850..1378290) /locus_tag="AGROH133_06018" /note="Uncharacterized BCR, YaiI/YqxD family COG1671; Region: DUF188; cl00727" /db_xref="CDD:186163" gene 1378469..1378921 /locus_tag="AGROH133_06019" /db_xref="GeneID:10267136" CDS 1378469..1378921 /locus_tag="AGROH133_06019" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278674.1" /db_xref="GI:325292810" /db_xref="GeneID:10267136" /translation="MLEEFIVQAKSATYVGGGNKSSTPTRIGSHDLGFRSGDWNYIDS YFGGTDFIGQEVVWHQGIPLWAMNYYGRIIRPELIDGTVAGRVIQRSLSTLYREGRFL GGFTHEVEDTIYVDTNEGEFRSFTGVERIYRDGVEVYRLDYHGGVIKP" gene complement(1378985..1379641) /locus_tag="AGROH133_06020" /db_xref="GeneID:10267137" CDS complement(1378985..1379641) /locus_tag="AGROH133_06020" /EC_number="1.11.1.7" /note="Thioredoxin-like fold, AhpC/TSA family; Peroxiredoxin" /codon_start=1 /transl_table=11 /product="peroxidase" /protein_id="YP_004278675.1" /db_xref="GI:325292811" /db_xref="GeneID:10267137" /translation="MSLRINDIAPDFTADTTHGPVSFHEWIGDGWAVLFSHPKNFTPV CTTELGAMGGLQPEFEKRGVKIIGISVDPVESHEKWKNDIRTATGFNVDYPLIGDKDL KVAKLYDMLPAGAGESSEGRTPADNATVRSVFVVGPDKKIKLVLTYPMTTGRNFDEIL RAIDSIQLTSKHQVATPANWKQGEDVIITAAVSNEDAIARFGSYDTVLPYLRKTKQPG " misc_feature complement(1379042..1379641) /locus_tag="AGROH133_06020" /note="Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]; Region: AhpC; COG0450" /db_xref="CDD:30799" misc_feature complement(1378997..1379629) /locus_tag="AGROH133_06020" /note="Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by...; Region: PRX_1cys; cd03016" /db_xref="CDD:48565" misc_feature complement(order(1379003..1379005,1379012..1379014, 1379105..1379110,1379114..1379119,1379144..1379149, 1379159..1379161,1379168..1379170,1379174..1379191, 1379195..1379203,1379207..1379215,1379255..1379257, 1379315..1379317,1379384..1379386,1379393..1379395, 1379489..1379491,1379498..1379506,1379513..1379515, 1379627..1379629)) /locus_tag="AGROH133_06020" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48565" misc_feature complement(order(1379018..1379020,1379069..1379071, 1379258..1379263,1379309..1379311,1379339..1379344, 1379369..1379371,1379396..1379401,1379405..1379410, 1379414..1379419,1379423..1379431,1379591..1379593)) /locus_tag="AGROH133_06020" /note="decamer (pentamer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:48565" misc_feature complement(order(1379249..1379251,1379507..1379509, 1379516..1379518)) /locus_tag="AGROH133_06020" /note="catalytic triad [active]" /db_xref="CDD:48565" gene 1379722..1379856 /locus_tag="AGROH133_06021" /db_xref="GeneID:10267138" CDS 1379722..1379856 /locus_tag="AGROH133_06021" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278676.1" /db_xref="GI:325292812" /db_xref="GeneID:10267138" /translation="MREMASPFHGKRHANDLSLKRTRIVFVLANAYSDALPFPAGAKS " gene 1379910..1380560 /locus_tag="AGROH133_06022" /db_xref="GeneID:10267139" CDS 1379910..1380560 /locus_tag="AGROH133_06022" /EC_number="2.5.1.18" /note="Glutathione S-transferase, C-terminal-like" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase" /protein_id="YP_004278677.1" /db_xref="GI:325292813" /db_xref="GeneID:10267139" /translation="MTITITAFERSPDGGKGLARDMRVRWALEEAGLSYDVRLLSFKA MREPAHLALQPFGQIPTYEEGDLVLFESGAIIFHIAERNAGLLPRDVNARARAITWMF AALNTVEPPIVDRSIARFLEGDKSWYEERLAMIDKNISKRLGELSRCLGDDDWLDGAF SAGDLLMISVLQRIKSSGILDEYPNLSAYVARGEARPAYQRAFADQLAVFKAASTG" misc_feature 1379916..1380155 /locus_tag="AGROH133_06022" /note="GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins...; Region: GST_N_GTT1_like; cd03046" /db_xref="CDD:48595" misc_feature order(1379967..1379969,1379973..1379978,1379982..1379987, 1379994..1379999,1380126..1380128,1380135..1380140) /locus_tag="AGROH133_06022" /note="putative C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48595" misc_feature order(1379967..1379969,1380081..1380089,1380120..1380125) /locus_tag="AGROH133_06022" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48595" misc_feature 1379976..1380524 /locus_tag="AGROH133_06022" /note="maleylacetoacetate isomerase; Region: maiA; TIGR01262" /db_xref="CDD:162274" misc_feature order(1380081..1380083,1380117..1380122,1380126..1380131, 1380138..1380140) /locus_tag="AGROH133_06022" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48595" misc_feature 1380186..1380518 /locus_tag="AGROH133_06022" /note="Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and...; Region: GST_C_family; cl02776" /db_xref="CDD:194436" misc_feature order(1380201..1380203,1380222..1380224,1380393..1380395, 1380402..1380407,1380414..1380416,1380426..1380428) /locus_tag="AGROH133_06022" /note="N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48103" misc_feature order(1380201..1380206,1380213..1380215,1380342..1380344) /locus_tag="AGROH133_06022" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48103" misc_feature order(1380222..1380224,1380234..1380239,1380246..1380251, 1380417..1380419,1380426..1380428) /locus_tag="AGROH133_06022" /note="substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48103" gene 1380860..1381510 /locus_tag="AGROH133_06023" /db_xref="GeneID:10267140" CDS 1380860..1381510 /locus_tag="AGROH133_06023" /note="FMN-binding split barrel, related, Pyridoxamine 5'-phosphate oxidase; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278678.1" /db_xref="GI:325292814" /db_xref="GeneID:10267140" /translation="MTAFELDPEFAITDEPSLRGLFEATHALAILKCQDTIGEHAREF IRRSPFLCIGTQNLAGSADVSPRGDPAGFVKILDERTLAIPDRPGNNRLDTLTNIIAN PSVGLLFVIPGFDDTLRVNGQAKLATDPELLRSMSINDRAPKLAIVVRVSEVFMHCAK AFRRSHLWSPDHFQDRSEMPSLIKIILDETTGAPSNKDEMRKLDDDLEKDYQRTLY" misc_feature 1380911..1381507 /locus_tag="AGROH133_06023" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" gene complement(1381511..1382152) /locus_tag="AGROH133_06024" /db_xref="GeneID:10267141" CDS complement(1381511..1382152) /locus_tag="AGROH133_06024" /note="Cytochrome b561 family" /codon_start=1 /transl_table=11 /product="Cytochrome B561" /protein_id="YP_004278679.1" /db_xref="GI:325292815" /db_xref="GeneID:10267141" /translation="MQYLKGHSDRATSGVRRWRNTPASFGLVAIVFHWTIALLFLAQL ALGYLMSRDIDPVLQFNLFQYHKSIGFLVLALAAPRFIWSVFSRKPRALDGEGMASRL AARSAHAALLFLTLAVPLAGWAVASTSPLQIPSYVFDLVVVPGLPMAISDQAEAFWTE VHATLAYLAAVIVVLHVAAALWHHFVRKDPTLRRMIAFRAAADNMGRTASPRK" misc_feature complement(1381553..1382101) /locus_tag="AGROH133_06024" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cl00859" /db_xref="CDD:186225" gene complement(1382156..1382935) /gene="prtR" /locus_tag="AGROH133_06029" /db_xref="GeneID:10267142" CDS complement(1382156..1382935) /gene="prtR" /locus_tag="AGROH133_06029" /note="Predicted transmembrane transcriptional regulator (anti-sigma factor)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_004278680.1" /db_xref="GI:325292816" /db_xref="GeneID:10267142" /translation="MTGNEPQITEADLISYVDGQLEDERRDAVRSHLASNPADARKVE IWQRQNATLTALYRPADVDVLPERLDVYRMERRLRSERANWRNLAAASVLVLAVGLTG GWFGRGLVSEVEAPAHSIVADATQAHKLFASEVLHPVEVRADAENGSSLPKWLSKRLD RKLNVPDLTRHGLSLVGGRVLPSSEGAAAQLMYEDKSGQRITLYIVAAAETSDTAMRR SNVDALETVSWDDETIRCALVGSLPSDRMDAIAKDTYQQLS" misc_feature complement(1382162..1382926) /gene="prtR" /locus_tag="AGROH133_06029" /note="Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]; Region: COG5662" /db_xref="CDD:35221" gene complement(1382932..1383438) /gene="prtI" /locus_tag="AGROH133_06031" /db_xref="GeneID:10267143" CDS complement(1382932..1383438) /gene="prtI" /locus_tag="AGROH133_06031" /note="RNA polymerase sigma factor, sigma-70 family; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog" /codon_start=1 /transl_table=11 /product="ECF family RNA polymerase sigma factor" /protein_id="YP_004278681.1" /db_xref="GI:325292817" /db_xref="GeneID:10267143" /translation="MPDFLDEITSCIPALRRYANALTHDRDTADDLVQDCLERAIRKK ALWRPQGPLRPWLYRVLVNVYRNNLRGRNRRPSQIPIDDVAEQIFVPAPQTGRIALAE MARAIEKLSGEHREALLLVVVEGLSYAEAAKVLEIPLGTLMSRLGRARTALARMTQED QPNLKVIK" misc_feature complement(1382959..1383438) /gene="prtI" /locus_tag="AGROH133_06031" /note="DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]; Region: RpoE; COG1595" /db_xref="CDD:31783" misc_feature complement(1383214..1383417) /gene="prtI" /locus_tag="AGROH133_06031" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature complement(1382980..1383141) /gene="prtI" /locus_tag="AGROH133_06031" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature complement(order(1382989..1382991,1382995..1383000, 1383004..1383012,1383016..1383021,1383025..1383027, 1383055..1383060,1383076..1383078,1383106..1383108)) /gene="prtI" /locus_tag="AGROH133_06031" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene complement(1383444..1383833) /locus_tag="AGROH133_06032" /db_xref="GeneID:10267144" CDS complement(1383444..1383833) /locus_tag="AGROH133_06032" /note="Uncharacterised conserved lipoprotein, Secreted repeat of unknown function; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278682.1" /db_xref="GI:325292818" /db_xref="GeneID:10267144" /translation="MREHHFILAGALALASTAALAEPYAGGAVVETATAKGTILTDAK GMTLYTFDNDGDGSSACYDACTKKWPPLAAAKTDKADGDYRPLARRDGTMQWSHDGKP LYHWQMDKKPGDVTGDGVGGIWHVAKE" misc_feature complement(1383615..1383737) /locus_tag="AGROH133_06032" /note="Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640" /db_xref="CDD:112457" misc_feature complement(1383450..1383584) /locus_tag="AGROH133_06032" /note="Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640" /db_xref="CDD:112457" gene complement(1383945..1384511) /locus_tag="AGROH133_06034" /db_xref="GeneID:10267145" CDS complement(1383945..1384511) /locus_tag="AGROH133_06034" /note="Lipid/polyisoprenoid-binding, YceI-like; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278683.1" /db_xref="GI:325292819" /db_xref="GeneID:10267145" /translation="MKHLYSITLVIATLACTAVSASPFSSAAGRYRIDPASHIGFSIA QVAGPGINGTIPDISGRFDIDPDQPSKSYVEISLNPSSVKTGQERVENFLRSSAVFNI AAYPQIVFRSNRVTQDGPRSAVVEGVLTARGVSRAETFHATFVEQQKGSVTFHVTGNI PRLPYGMGVGVPLYSNTVAFDIDLKGVR" misc_feature complement(1383948..1384493) /locus_tag="AGROH133_06034" /note="YceI-like domain; Region: YceI; cl01001" /db_xref="CDD:194004" gene complement(1385535..1386908) /locus_tag="AGROH133_06036" /db_xref="GeneID:10267146" CDS complement(1385535..1386908) /locus_tag="AGROH133_06036" /note="Integrase, catalytic core; Transposase and inactivated derivatives" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="YP_004278684.1" /db_xref="GI:325292820" /db_xref="GeneID:10267146" /translation="MGLITMSERDLQRIEVLSKVVDGRMTIVAAAHVLAISDRHVQRL IGRIEATGAASIRHKAIGRPSNNKIATGVRDYVLILVRERYLDFGPTLAAEKLQEEHG VTVSRETLRKWMQDAGIWLSRKQRRAFHQPRLRREAYGELVQIDGSEHRWFEDRGPAC SLLVFVDDATGKLMQLRFVRSESAFTYFEALSLYLEEHGAPIAFYSDKHSVFRVARKD AKGGQGMTQFGRALSELHIEILCANSSQAKGRVERMNRTLQDRLVKELRLANISDMET GNAFLPAFIERYNDRFAVTPTRPDNLHRPVNLAPSRLNDVLCKREQRHVGAQLSFSYE RKRIMLEENDVTRGLVGKYVETFAYVDGRLDIRWKGHSLPYKIFDKDQRVTHAAVVEN KRLGEVLAYIKEKQDQDHAPAPKTNSEKIGYKPRGRKPGPRTDFMNDPDVIARRQKAL AQMDAAE" misc_feature complement(1386486..1386872) /locus_tag="AGROH133_06036" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3415" /db_xref="CDD:33221" misc_feature complement(1386123..1386491) /locus_tag="AGROH133_06036" /note="Integrase core domain; Region: rve; cl01316" /db_xref="CDD:194099" gene complement(1387239..1387361) /locus_tag="AGROH133_06037" /db_xref="GeneID:10267147" CDS complement(1387239..1387361) /locus_tag="AGROH133_06037" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278685.1" /db_xref="GI:325292821" /db_xref="GeneID:10267147" /translation="MPFSLLKETAMCTAPIDVSKLNTDQPHNVDVVEDHSLLID" gene complement(1387541..1388437) /locus_tag="AGROH133_06038" /db_xref="GeneID:10267148" CDS complement(1387541..1388437) /locus_tag="AGROH133_06038" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004278686.1" /db_xref="GI:325292822" /db_xref="GeneID:10267148" /translation="MSINCEILDLRAFQAVVELESFHRAADALHISQPALTRRIQKLE QAIGAPLLERTTRHVAPTAMGQEVMPLVRRMLEEFDGSLFAMKDGAHRRGLITMACVP TAAFYFLPTVIKTFSKQYPHIRLRIRDLTANEGLQAVARGEVEFGINLMGNSDPDLAF EPLIDDPFVLAMRKDHPLAAFETIQWNQLEPYPLVVVDRSSGNRTLLDGALARHNLKL NWFYEVTHLNTSLGLVEAGLGISVLPRLATPQDDHPFLVTRPIVNPVVSRTIGIVQRR SSALSPAAEKFVEMLLKTWKTP" misc_feature complement(1387562..1388413) /locus_tag="AGROH133_06038" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature complement(1388240..1388413) /locus_tag="AGROH133_06038" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1387565..1388155) /locus_tag="AGROH133_06038" /note="TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440" /db_xref="CDD:176131" misc_feature complement(order(1387730..1387735,1387739..1387744, 1387760..1387777,1388051..1388071,1388075..1388077, 1388087..1388089,1388096..1388101,1388105..1388110)) /locus_tag="AGROH133_06038" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176131" gene 1388543..1389625 /locus_tag="AGROH133_06040" /db_xref="GeneID:10267149" CDS 1388543..1389625 /locus_tag="AGROH133_06040" /note="Protein of unknown function DUF453; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278687.1" /db_xref="GI:325292823" /db_xref="GeneID:10267149" /translation="MNDLLKIPCVLMRGGTSRGPFFLASDLPRNRAERDAALLSIMGS GHPLQIDGIGGGNPVTSKVAIIGPSTVKGADIDYLFAQVRTDRQYVDYSPNCGNMLAA VGPFAIEAGLVEARGSDTVVRIHNVNTGKLIEAKVPTRGREVIYLGDASIDGVPGLAA PIALTFVDAAGAKTGKLLPTGNPVDTVEGIDVTAIDCAIPMVLMRAGDLGVTGYEDPQ TLTSNSDLIERLTRIRIQAGKLMGMGNVTDMVIPKPVIVAPARKGGTLSVRYFMPNEC HPALATTGAVGIATAAITEGSVAFEQAGNRSVPTQICIEHPAGRLDVQLEMRNGAITA GLVRTARRLFEGFAFAKPNAAIEDAA" misc_feature 1388546..1389607 /locus_tag="AGROH133_06040" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2828" /db_xref="CDD:32656" gene 1389674..1390675 /locus_tag="AGROH133_06041" /db_xref="GeneID:10267150" CDS 1389674..1390675 /locus_tag="AGROH133_06041" /note="ABC transporter, substrate-binding protein, aliphatic; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="ABC transporter substrate-binding protein" /protein_id="YP_004278688.1" /db_xref="GI:325292824" /db_xref="GeneID:10267150" /translation="MRKYLLATAALCALAASANAESVRMSVGSYNLNNLPFPVAASLG FYKDEGLEVTTENFAQGGSKVLQALVAGSTDVAVGFYDHTIQMQSQNKHVVGFVQLAR NSGLVLAGKNDTDFDPAKPETIKGKKVGITSPGSSSDFFIRYYMKQHNLSDNDIAIIG VGSGAAAVAALQQGKIDLLVNYDPAATIVVERGLGKILIDARSDQGAKDVYGGIYPTS VLYATQEYIDAHPEVIQKVTNATVKALHWMKEHSAEEIVAKLPDDFVSGDKQTYIKAV EAAKAIFSEDGTFNQADLETPLAVLKSFNDAVAKATIDLNTTYTNKFVEAAASKGVN" misc_feature 1389764..1390435 /locus_tag="AGROH133_06041" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 1390685..1391506 /locus_tag="AGROH133_06043" /db_xref="GeneID:10267151" CDS 1390685..1391506 /locus_tag="AGROH133_06043" /note="ABC transporter related; ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004278689.1" /db_xref="GI:325292825" /db_xref="GeneID:10267151" /translation="MSLPIRKLEPVAELNLQPMVAIENVTMAFGAFVAVQDVNLKVGD GEFLSIVGPTGCGKSTILNAIAGLLKPAQGKVSIDGSAVQGVQNNIGYLFQQDALLPW KTAYQNVELGLLFRGVSEHERRTKVLAWLEKVGLKGFEERFPHQLSGGQRKRVQMAQA LITEPKVILMDEPFSALDIHTRHLMQNELLRLWQEDRRAVVMITHDLEEAIALGDRVV VLAAGPKSRVIESFPVDLERPRNVAEIKLDPKFMTLYRDIWASLRGEVEKSYASR" misc_feature 1390736..1391491 /locus_tag="AGROH133_06043" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116" /db_xref="CDD:31313" misc_feature 1390742..1391392 /locus_tag="AGROH133_06043" /note="NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars...; Region: ABC_NrtD_SsuB_transporters; cd03293" /db_xref="CDD:73052" misc_feature 1390838..1390861 /locus_tag="AGROH133_06043" /note="Walker A/P-loop; other site" /db_xref="CDD:73052" misc_feature order(1390847..1390852,1390856..1390864,1390967..1390969, 1391195..1391200,1391297..1391299) /locus_tag="AGROH133_06043" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73052" misc_feature 1390958..1390969 /locus_tag="AGROH133_06043" /note="Q-loop/lid; other site" /db_xref="CDD:73052" misc_feature 1391123..1391152 /locus_tag="AGROH133_06043" /note="ABC transporter signature motif; other site" /db_xref="CDD:73052" misc_feature 1391183..1391200 /locus_tag="AGROH133_06043" /note="Walker B; other site" /db_xref="CDD:73052" misc_feature 1391207..1391218 /locus_tag="AGROH133_06043" /note="D-loop; other site" /db_xref="CDD:73052" misc_feature 1391285..1391305 /locus_tag="AGROH133_06043" /note="H-loop/switch region; other site" /db_xref="CDD:73052" gene 1391493..1392269 /locus_tag="AGROH133_06044" /db_xref="GeneID:10267152" CDS 1391493..1392269 /locus_tag="AGROH133_06044" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004278690.1" /db_xref="GI:325292826" /db_xref="GeneID:10267152" /translation="MQAVNVRIIQIVLLVVLLGGWQLGVSSGAIDRFFFPAPIDIVKQ VITWVADAGFYKHVGITLSETVLGYLIGTGLGVGAGVWLGLSPFVARVLDPFIKAVNA IPRVVLAPIFVLWLGLGLWSKVALAVTLVFFVTFFNAMQGVREVNPVVLSNTRILGAK RSDLLRHVYFPAAASWILSSLRTSVGFAVVGAIIGEYLGSSAGLGYLIARSEGNFDAV GVFAGIIILAIFVLVIDLILDVAERKLITWRPNAGEERPA" misc_feature 1391580..1392236 /locus_tag="AGROH133_06044" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 1392502..1393611 /locus_tag="AGROH133_06050" /db_xref="GeneID:10267153" CDS 1392502..1393611 /locus_tag="AGROH133_06050" /EC_number="2.7.3.-" /note="Histidine kinase, sensory_box: PAS domain S-box; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="sensory box histidine kinase" /protein_id="YP_004278691.1" /db_xref="GI:325292827" /db_xref="GeneID:10267153" /translation="MKDNDLLRQDAQDAGERLVSGHASEDPFAAAFKATRMPMIITNP LLNDNPIIFCNAAFSRLTGYSAEELVGQNCRLLQGPDTDPGSVTKLREAIAAEQDLAI DILNYRKDGSEFWNALFVSPVRDASGTVIYFFASQLDFTDIKSKEAELARARHIAEGE VALRTADLTEALRAKTTLVHEVDHRVKNNLLTIASIVKLQARMTDNDVVERTLMSVLN RVEALSTVQRKLLNDEDVGHFDVADFANTLMLDKIGALKRTDINLTTDLHEVVVPATK ASPLALIINELIGDAIRRGLKDRGGQLHLEVKRLNGHFLVRVADTVTPGEVDKEEAAF SKKMLEACVKQLRATIVRTVEGCLSDVRVTLSVKD" misc_feature 1392571..1392951 /locus_tag="AGROH133_06050" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 1392604..1392918 /locus_tag="AGROH133_06050" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(1392661..1392663,1392673..1392675,1392691..1392693, 1392730..1392741,1392817..1392819,1392832..1392834) /locus_tag="AGROH133_06050" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(1392721..1392723,1392733..1392735,1392757..1392759, 1392766..1392771,1392853..1392855,1392859..1392861) /locus_tag="AGROH133_06050" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 1392982..1393557 /locus_tag="AGROH133_06050" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG3920" /db_xref="CDD:33706" misc_feature 1393042..1393245 /locus_tag="AGROH133_06050" /note="Histidine kinase; Region: HisKA_2; cl06527" /db_xref="CDD:157259" gene 1393623..1394048 /locus_tag="AGROH133_06051" /db_xref="GeneID:10267154" CDS 1393623..1394048 /locus_tag="AGROH133_06051" /note="CheY-like; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="response regulator" /protein_id="YP_004278692.1" /db_xref="GI:325292828" /db_xref="GeneID:10267154" /translation="MKILIVEDEALLAMELESEVEDAGHEIVGIAADSKEAIELANKA LPQFAFVDIQLLDGPTGIEVGRYLSSSSIPYVFVSGNLKRIPEDFAGALGAIEKPYTM NGLQNALQFIEGIVIGAERSATPPPSLVVSPKLLAALSA" misc_feature 1393629..1393952 /locus_tag="AGROH133_06051" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 1393632..1393952 /locus_tag="AGROH133_06051" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1393641..1393646,1393776..1393778,1393803..1393805, 1393857..1393859,1393905..1393907,1393914..1393919) /locus_tag="AGROH133_06051" /note="active site" /db_xref="CDD:29071" misc_feature 1393776..1393778 /locus_tag="AGROH133_06051" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1393785..1393790,1393794..1393796,1393800..1393805) /locus_tag="AGROH133_06051" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1393914..1393922 /locus_tag="AGROH133_06051" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 1394082..1396394 /locus_tag="AGROH133_06052" /db_xref="GeneID:10267155" CDS 1394082..1396394 /locus_tag="AGROH133_06052" /EC_number="2.7.3.-" /note="HWE histidine kinase, sensory_box: PAS domain S-box" /codon_start=1 /transl_table=11 /product="Signal transduction histidine kinase" /protein_id="YP_004278693.1" /db_xref="GI:325292829" /db_xref="GeneID:10267155" /translation="MNSPSERIDAVRNSGLLDVQSPPEFQDIIEVVKTGLKCPVALIS ILDEHRQVFIAHVGLPPKWAEAAETPLTHSFCQHVVRDRQPLIIGDATVHDLVRNNLA ITDLGVISYMGVPVTLPDGMVIGALAAIDGEPRTWTESELQLLNQIGRVASNQIATFL SERRWGALFQQLEEGIVVGSVIRDVDGTIVDWRYETVNPAWSTLLGLPGDNVPGRTMR ELFPEFENEWVSDVVEAVETQQSKRFTRKIGSMDRWFDGYVQATGEDAFVIMFVEVTD RMQAQEALRDSETKLRLIVEGAKDYIIMTIDEDQRITSWFGGAQETFGWSEAEMLGRP FESIFTEEDREAGVPAAEVSRATSEGVAPDRRWHLAADGSSIFLDGTIRPMANHSSPK VPGYIKVARNATAQKLSEDRQLAFLELGEKIRELDTVAEVAFAAAEILARSLRGATRA GYGIVDPIAETVQMLPDWCAEGMFTVAGLHHFRNYGSYIQDLKRGETVIIPDVATDPR TSASAELLHSLGISVLVNVPIIERGAFAGVMFVHYDKPHEFSSEERDFVRAIADRTRE AISRIRAEQEQQVLNHEISHRLKNTMAMVQAIATQTLRPVTDRAPVEAFTSRLRALSN AHEVLLNQDWSSARMVAVIDSVLRQLSLPERYRISGTDMEIGPRTALSLALLMHELGT NALKYGAWSSDAGTVVISWTIEDAGGENALVLEWKEQDGPPVTAPSGKGFGSKLIQLG LMGTGGVEVNFDPDGLRVTMQGLVSHLRQS" misc_feature 1394088..1394573 /locus_tag="AGROH133_06052" /note="FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203" /db_xref="CDD:32385" misc_feature 1394154..1394549 /locus_tag="AGROH133_06052" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 1394562..1394933 /locus_tag="AGROH133_06052" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 1394580..1394783 /locus_tag="AGROH133_06052" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature 1394940..1395311 /locus_tag="AGROH133_06052" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 1394949..1395119 /locus_tag="AGROH133_06052" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature <1395555..1395815 /locus_tag="AGROH133_06052" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 1395774..1396391 /locus_tag="AGROH133_06052" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: COG3920" /db_xref="CDD:33706" misc_feature 1395828..1396061 /locus_tag="AGROH133_06052" /note="Histidine kinase; Region: HisKA_2; cl06527" /db_xref="CDD:157259" gene 1396391..1396774 /locus_tag="AGROH133_06053" /db_xref="GeneID:10267156" CDS 1396391..1396774 /locus_tag="AGROH133_06053" /EC_number="2.7.3.-" /note="CheY-like, Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="histidine kinase/response regulator hybrid protein" /protein_id="YP_004278694.1" /db_xref="GI:325292830" /db_xref="GeneID:10267156" /translation="MMTVTSNAADVATILVVEDEPLLRLAAVDLVETAGYTALAAADA TEAVNILEARADIRIVFTDIDMPRGVDGLQLAAIIRDRWPPIKVILVSGHLEDPGHMI AADTAFFTKPYCEEQIVETIRQMLR" misc_feature 1396430..1396759 /locus_tag="AGROH133_06053" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 1396433..1396768 /locus_tag="AGROH133_06053" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(1396442..1396447,1396577..1396579,1396604..1396606, 1396664..1396666,1396712..1396714,1396721..1396726) /locus_tag="AGROH133_06053" /note="active site" /db_xref="CDD:29071" misc_feature 1396577..1396579 /locus_tag="AGROH133_06053" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(1396586..1396591,1396598..1396606) /locus_tag="AGROH133_06053" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 1396721..1396729 /locus_tag="AGROH133_06053" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 1396897..1398159 /locus_tag="AGROH133_06054" /db_xref="GeneID:10267157" CDS 1396897..1398159 /locus_tag="AGROH133_06054" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278695.1" /db_xref="GI:325292831" /db_xref="GeneID:10267157" /translation="MTDKLPAELDGLHRNTFEYFWSGSHPESGLPRDRMRSDGLSIHE IASVSGIGFGFLSLIVGVRRSWITEQEAIARASRMLRSLASVKRFHGAFPHFIDASSG RTIPFAKFDDGGDLVETALLVQALICVRQFFGAQTSSEIDLRRSVNEIVETVEWGWFT RGKPGPLFWHWSRRYAWAKNLPIVGWNEALVCYVLAAGSTTHAISAESYHSGWASDGE IRNGSMYLGVRLPLGQPYGGPLFLSHYSFCTLDPRGLGDVYCHDYLEQVHAHCMINYR YCRTRYPSDAGWGLSACDGPKGYVVNSPTDDDGIIATTAALSSMPFFSHRSREAALRF LQWNNGALVGRFGLMDSFQPSTGWVSGTHLAINQGPVVAMMENYRSGLIWDLFMNAPE VKNGLAKLGFHQDRSFEKSGLQEGRTDP" misc_feature 1396906..1398102 /locus_tag="AGROH133_06054" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5368" /db_xref="CDD:34934" misc_feature 1397434..1398069 /locus_tag="AGROH133_06054" /note="Uncharacterized protein conserved in bacteria (DUF2329); Region: DUF2329; pfam10091" /db_xref="CDD:150731" gene complement(1398320..1398715) /gene="cy2" /locus_tag="AGROH133_06055" /db_xref="GeneID:10267158" CDS complement(1398320..1398715) /gene="cy2" /locus_tag="AGROH133_06055" /note="Cytochrome c, class IA/ IB" /codon_start=1 /transl_table=11 /product="Cytochrome c2" /protein_id="YP_004278696.1" /db_xref="GI:325292832" /db_xref="GeneID:10267158" /translation="MRKRMIITAAMLAASAIPAFSEGDVAKGEAAFKRCSACHAIGEG AKNKVGPQLNGIIGRTAGGDPDYNYSNAMKKAGGEGLVWTPEELRDFLSAPKKKIPGN KMALAGISKPEELDNLIAYIESASSKPAE" misc_feature complement(1398326..1398715) /gene="cy2" /locus_tag="AGROH133_06055" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene complement(1398784..1399344) /locus_tag="AGROH133_06057" /db_xref="GeneID:10267159" CDS complement(1398784..1399344) /locus_tag="AGROH133_06057" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278697.1" /db_xref="GI:325292833" /db_xref="GeneID:10267159" /translation="MNRRELLKLIGIASGLPLIGADVVTAAENAAKPAGDVHVFSPEE IRLLDEVAETIIPRTSTPGAKDAAVGAFMAVYAADCYTGEQRKLFLSAMADIENRSRT EYKKAFLELTSQERQTLISALDKQARAEQTPTAPHPFTLVKQLTLLGFFTSKIGATEV LVYDEIPGGFETCVPYKKGTPAWGTT" gene complement(1399344..1401029) /locus_tag="AGROH133_06059" /db_xref="GeneID:10267160" CDS complement(1399344..1401029) /locus_tag="AGROH133_06059" /EC_number="1.1.99.3" /note="Glucose-methanol-choline oxidoreductase, N-terminal; Choline dehydrogenase and related flavoproteins" /codon_start=1 /transl_table=11 /product="Glucose-methanol-choline oxidoreductase" /protein_id="YP_004278698.1" /db_xref="GI:325292834" /db_xref="GeneID:10267160" /translation="MADNHYDAIVVGSGISGGWAAKELTEKGLKVLLLERGRNIEHIT DYQNADKEAWDYPHRNRATQEMKAKYPVLSRDYLLEEATLGMWADEQETPYVEEKRFD WFRGYHVGGRSLLWGRQTYRWSQTDFVANAKEGIAVDWPIRYQDIAPWYDYVERFAGI SGSREGLDILPDGEFLPPIPLNCVEEDVARRLKTAFKGTRHLINSRCANITQELPDQE RTRCQFRNKCRLGCPFGGYFSTQSSTLPAAVATGNLTLRPFSIVKEILYDKDKKKARG VEIIDAETNLTYEYTADVIFLNASTLNSTWVLMNSATDVWEGGLGSSSGELGHNVMDH HFRMGATGEVEGFEEFYFKGRRPAGFYIPRFRNTGDDKRNYLRGFGYQGSASRSRWER EIAELNIGADYKEALTQPGAWTIGMTAFGEMLPYHENRVKLDHDKKDKWGLPVLSMNV EMKQNELDMREDMVNDAVEMFEAVGIKNVKPSRGSYAPGMGIHEMGTARMGRDPKTSV LNGNNQVWDAPNVFVTDGACMTSASCVNPSLTYMALTARAAEFAVSERKKGNL" misc_feature complement(1399359..1401029) /locus_tag="AGROH133_06059" /note="Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Region: BetA; COG2303" /db_xref="CDD:32458" misc_feature complement(<1400922..1401014) /locus_tag="AGROH133_06059" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(1399386..1399757) /locus_tag="AGROH133_06059" /note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199" /db_xref="CDD:191229" gene complement(1401183..1402037) /locus_tag="AGROH133_06060" /db_xref="GeneID:10267161" CDS complement(1401183..1402037) /locus_tag="AGROH133_06060" /note="Xylose isomerase-like, TIM barrel; Sugar phosphate isomerases/epimerases" /codon_start=1 /transl_table=11 /product="xylose isomerase family protein" /protein_id="YP_004278699.1" /db_xref="GI:325292835" /db_xref="GeneID:10267161" /translation="MKTFKSKFAKMAFVVGLAAGIANPVFADDSKTLPIAAQMYTLRN AGTLEEQLAILNRAGVSAVETVDMQKVTSSELNALLEKHKIKVISSHVPIDKLRGNLD EVITEQKAVGNPVVTVPFLKPEDRPKDAAGWTAFGKELGGYADKLSAAGLSMAYHNHD FEMVKFDGKTALELLLDAAGPKLQSELDVAWVARSGNDPAEFLGTLNGRVFAIHAKDN APAGTAENERGFATIGTGVLDWKTILPAAKHAGAQWFILEHDLPLDAEAVVTKGNAFL SEHLPTIQ" misc_feature complement(1401192..1401899) /locus_tag="AGROH133_06060" /note="Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082" /db_xref="CDD:31279" gene complement(1402166..1403335) /locus_tag="AGROH133_06062" /db_xref="GeneID:10267162" CDS complement(1402166..1403335) /locus_tag="AGROH133_06062" /EC_number="1.1.1.-" /note="Oxidoreductase family, NAD-binding Rossmann fold; Predicted dehydrogenases and related proteins" /codon_start=1 /transl_table=11 /product="oxidoreductase domain-containing protein" /protein_id="YP_004278700.1" /db_xref="GI:325292836" /db_xref="GeneID:10267162" /translation="MSSATARFNSRRIRLGMVGGGQGAFIGAVHRIAARLDDRYELVA GALSSDPARASASATLLGIAPERSYASFEEMASAEAGREDGIEAVAIVTPNHLHFAPS KFFLESGIHVICDKPVTATLEEAKELAKIVRASDRLFILTHNYTGYAMLRQMREMVAN GAIGKLRHVQAEYAQDWLTEAVEKTGAKGAEWRTDPSRSGAGGAIGDIGTHAFNAAAF VTGEIPASLYADLTSFVPGRQLDDSANILLRYESGAKGMLWASQIAVGNENALSLRVY GDKGGLEWHHRVPDELWFTPYGEPKRLITRNGAGAGAAANRVSRVPSGHPEGYLEGFA TIYREAANAIIAKREGKAAAGDVIYPGIEDGLAGLAFIDAAVRSSLTSSWVEIDI" misc_feature complement(1402172..1403308) /locus_tag="AGROH133_06062" /note="Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:31017" misc_feature complement(1402907..1403299) /locus_tag="AGROH133_06062" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1402511..1402873) /locus_tag="AGROH133_06062" /note="Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; cl11611" /db_xref="CDD:159579" gene complement(1403347..1404396) /locus_tag="AGROH133_06063" /db_xref="GeneID:10267163" CDS complement(1403347..1404396) /locus_tag="AGROH133_06063" /note="Xylose isomerase-like, TIM barrel; Sugar phosphate isomerases/epimerases" /codon_start=1 /transl_table=11 /product="xylose isomerase family protein" /protein_id="YP_004278701.1" /db_xref="GI:325292837" /db_xref="GeneID:10267163" /translation="MKTIKGPAIFLAQFVGDKAPFDTLDNLGQWAASLGYKGIQVPTD PKLFDLEKAAASKAYCDDIKGRLAETGIEITELSTHIQGQLVAVHPAYDEMFDGFAPA ELRGKPQARQEWAVNQLKCAAKASQHLGLKSHASFSGALAWPFVYPWPQRPAGLVEMA FAELGKRWTPILDTFEENGVDLCYELHPGEDLHDGITFSRFLEATGNHSRANILYDPS HFVLQAMDYLDFIDIYHERIRAFHVKDAEFNPTGRSGVYGGYQGWVDRPGRFRSLGDG HVDFGAVFSKLTQYDFEGWAVLEWECALKHPEDGAREGAGFIENHIIRVTERAFDDFA KSGADDAANRRLLGL" misc_feature complement(1403425..1404378) /locus_tag="AGROH133_06063" /note="Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082" /db_xref="CDD:31279" misc_feature complement(1403398..1403562) /locus_tag="AGROH133_06063" /note="AP endonuclease family 2 C terminus; Region: AP_endonuc_2_N; pfam07582" /db_xref="CDD:191792" gene complement(1404430..1405452) /gene="cytR" /locus_tag="AGROH133_06064" /db_xref="GeneID:10267164" CDS complement(1404430..1405452) /gene="cytR" /locus_tag="AGROH133_06064" /note="Periplasmic binding protein/LacI transcriptional regulator; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LacI family" /protein_id="YP_004278702.1" /db_xref="GI:325292838" /db_xref="GeneID:10267164" /translation="MSKDQGSNIREVAALAGVSIATVSRALQQPDKVRPETRKKVFDA VRQANFVPNAQAASFRRQSNNTVILLVRDIGNPFYLEIYKGVEEAAGEAGFKVLMGDA RNDENRVATHIDMVRQKHADGLILMTGQFPSELLGQGDALPPIVIASETVPGIALPTV KVDNRAASKNAVHHLIEAGHTKIAHLAGPFPESLAQERFEGYRDALEAAGIGYADELV VTGDYSIEAGRQAIAGLLENGISFTAIFASSDQMAIGAISELRGRGLSVPTDVSVIGF DDIIFANAFEPPLTTVRQPRQEMGRKAMALMVDRLNGKRTAETIVLDTELVVRGSVAP CRSPHR" misc_feature complement(1404451..1405431) /gene="cytR" /locus_tag="AGROH133_06064" /note="Transcriptional regulators [Transcription]; Region: PurR; COG1609" /db_xref="CDD:31797" misc_feature complement(1405270..1405425) /gene="cytR" /locus_tag="AGROH133_06064" /note="Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392" /db_xref="CDD:143331" misc_feature complement(order(1405273..1405278,1405282..1405287, 1405294..1405296,1405303..1405305,1405342..1405344, 1405351..1405356,1405369..1405371,1405378..1405383, 1405387..1405401,1405423..1405425)) /gene="cytR" /locus_tag="AGROH133_06064" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature complement(1405276..1405305) /gene="cytR" /locus_tag="AGROH133_06064" /note="domain linker motif; other site" /db_xref="CDD:143331" misc_feature complement(1404460..1405257) /gene="cytR" /locus_tag="AGROH133_06064" /note="Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria; Region: PBP1_LacI_like_6; cd06284" /db_xref="CDD:107279" misc_feature complement(order(1404679..1404681,1404778..1404780, 1405093..1405095,1405150..1405152,1405156..1405158, 1405165..1405167,1405192..1405194,1405255..1405257)) /gene="cytR" /locus_tag="AGROH133_06064" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:107279" misc_feature complement(order(1404571..1404573,1404622..1404624, 1404859..1404861,1405225..1405227)) /gene="cytR" /locus_tag="AGROH133_06064" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107279" gene complement(1405456..1406424) /gene="rbsC" /locus_tag="AGROH133_06066" /db_xref="GeneID:10267165" CDS complement(1405456..1406424) /gene="rbsC" /locus_tag="AGROH133_06066" /note="Branched-chain amino acid transport system / permease component; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components" /codon_start=1 /transl_table=11 /product="ribose ABC transporter transmembrane protein" /protein_id="YP_004278703.1" /db_xref="GI:325292839" /db_xref="GeneID:10267165" /translation="MTNPGLKIKSIITDPLTIAIGASVFLLLVGELLSPGFAQGSQIV RLLTIAAILGIVAAGQNLVILGGREGIDLSVGAMISLGAVLAGNMMNGQNVGIPLAIL VAGGIPFLIGLINGLGITFVRIPPLVMTLGMTAVIQGGLVVYSQGVPSGAAAPLLAGF INRPLVFGIPGVLFVWLGIAAIMLFVLRRTAFGFSIYAIGSNERAATLVGLPVSLIRT LLYGLSGLFAGLTGVCVIGYTGTSFISVGDQYVLPSIIAVVIGGTSLAGGAGGYIGTM AGAVALTILQSVLITLNLDVWARQIIFGVTLLALMLLYGRQKQLRV" misc_feature complement(1405483..1406277) /gene="rbsC" /locus_tag="AGROH133_06066" /note="Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579" /db_xref="CDD:119321" misc_feature complement(1405759..1405815) /gene="rbsC" /locus_tag="AGROH133_06066" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119321" gene complement(1406426..1407370) /gene="rbsC" /locus_tag="AGROH133_06077" /db_xref="GeneID:10267166" CDS complement(1406426..1407370) /gene="rbsC" /locus_tag="AGROH133_06077" /note="Branched-chain amino acid transport system / permease component; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components" /codon_start=1 /transl_table=11 /product="ribose ABC transporter transmembrane protein" /protein_id="YP_004278704.1" /db_xref="GI:325292840" /db_xref="GeneID:10267166" /translation="MNSLGFMRKQPWIITLVVLAVLIGVNTFLQPSFVQPAVLQSNLT TFLPLILVAIGQTYVILAGDIDLSVGSIVALANVVTVSVIAALGGTAGAVVAGMGAGV AVGLICGLVNGLFISGLRFQPIVTTFATGIIFAGLAIWVLPQAGLPVPEAYWQTYSGS FIGLPFVLWMLLAGIAFTLVVSRIPFHVHLLAVGGNRTGAFQTGLRLSGIRIGAYMIS GLFSALAALCLTGETASGDPLLGASLALSSISAVVLGGTALSGGFGSSTGSIAGALVL GMIGNVIFFAGLPFEYQTLVQGLIVLTALAGGVLVTRR" misc_feature complement(1406453..1407229) /gene="rbsC" /locus_tag="AGROH133_06077" /note="Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579" /db_xref="CDD:119321" misc_feature complement(1406723..1406779) /gene="rbsC" /locus_tag="AGROH133_06077" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119321" gene complement(1407367..1408860) /gene="rbsA" /locus_tag="AGROH133_06089" /db_xref="GeneID:10267167" CDS complement(1407367..1408860) /gene="rbsA" /locus_tag="AGROH133_06089" /EC_number="3.6.3.17" /note="D-xylose ABC transporter ATP-binding protein; ABC-type sugar transport system, ATPase component" /codon_start=1 /transl_table=11 /product="sugar ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004278705.1" /db_xref="GI:325292841" /db_xref="GeneID:10267167" /translation="MANALEAAGIQKNFGAVRALSDGRLTVGRGEIHALLGANGCGKS TLCKIVAGAVAPTSGTIRFNGENVRFKSPRDAENAGIALFYQELSLIPQLSVADNIFL GREPKRGVFVDSKALKAEARRLIALFDGVAGTGLEPDAIVGNLPPDQRQLVEILKVFA QNASLMIMDEATAALDGRQSERFFEILRAKKADGISTIMISHRLDEVFAVCDRITVMR NGATISELDTAATTREAVVHDMVGDVRAAPARQQGRAGSAPSLKVTDVAGEGVRGVSL EAYPGEIVGLAGLQGQGQSALLKGLFGASPFAAGQIQFEGRDVAIGKPSQAVHNGFAY VSGDRGRDASLQGRSIFENLVAALMVREKMRLVRPATLKPRVQKVADDMKTKFAGMDM PIGTLSGGNQQKIFISRWLATAPKLLLLDDPTKGIDLGAKADLFALMRQQADAGATIL LYSSEDAEILEYADRILVFNGGRISAELTGADMTSVNMTRAAYGDAA" misc_feature complement(1407376..1408860) /gene="rbsA" /locus_tag="AGROH133_06089" /note="ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129" /db_xref="CDD:31325" misc_feature complement(1408186..1408848) /gene="rbsA" /locus_tag="AGROH133_06089" /note="This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and...; Region: ABC_Carb_Monos_I; cd03216" /db_xref="CDD:72975" misc_feature complement(1408729..1408752) /gene="rbsA" /locus_tag="AGROH133_06089" /note="Walker A/P-loop; other site" /db_xref="CDD:72975" misc_feature complement(order(1408255..1408257,1408351..1408356, 1408582..1408584,1408726..1408734,1408738..1408743)) /gene="rbsA" /locus_tag="AGROH133_06089" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72975" misc_feature complement(order(1408582..1408584,1408606..1408614)) /gene="rbsA" /locus_tag="AGROH133_06089" /note="Q-loop/lid; other site" /db_xref="CDD:72975" misc_feature complement(order(1408399..1408413,1408567..1408581)) /gene="rbsA" /locus_tag="AGROH133_06089" /note="ABC transporter signature motif; other site" /db_xref="CDD:72975" misc_feature complement(1408351..1408368) /gene="rbsA" /locus_tag="AGROH133_06089" /note="Walker B; other site" /db_xref="CDD:72975" misc_feature complement(1408333..1408344) /gene="rbsA" /locus_tag="AGROH133_06089" /note="D-loop; other site" /db_xref="CDD:72975" misc_feature complement(1408249..1408269) /gene="rbsA" /locus_tag="AGROH133_06089" /note="H-loop/switch region; other site" /db_xref="CDD:72975" misc_feature complement(1407439..1408086) /gene="rbsA" /locus_tag="AGROH133_06089" /note="This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (; Region: ABC_Carb_Monos_II; cd03215" /db_xref="CDD:72974" gene complement(1408980..1410002) /gene="rbsB" /locus_tag="AGROH133_06090" /db_xref="GeneID:10267168" CDS complement(1408980..1410002) /gene="rbsB" /locus_tag="AGROH133_06090" /note="Periplasmic binding protein/LacI transcriptional regulator; ABC-type sugar transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="sugar ABC transporter substrate-binding protein" /protein_id="YP_004278706.1" /db_xref="GI:325292842" /db_xref="GeneID:10267168" /translation="MFKHLMAAAAMVLAAGTSVHAQEQSFKIGLSNSFVGSEWRTQMI EEAQAAAKAWGEKGVKVEVVVQSGNVDVQGQIGHIRNFMNQGVDAILINPGSPTAFDP IFAQAKARDILVIATDAEVSSKDAIYVGIDQKAWAAQSAQWLADSLKGKGSVVAINGI AGNPANEARVAGYREVFKKYPDIKVLNEANASWDQAQGQQAMQNLLATYPDISGVWVQ DGMADGAWRAIEAAGKTKDIAATGEIRKDFMTRWEKEKFNSGASVNPPGVMASALNVA VLKLQGKEFKDGIFGGTYGNAIYIPIPFVSNDNLADNIKSAEGKPGYWSVTATVTPEQ AGEFFK" misc_feature complement(1409058..1409954) /gene="rbsB" /locus_tag="AGROH133_06090" /note="ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879" /db_xref="CDD:32063" misc_feature complement(1409088..1409924) /gene="rbsB" /locus_tag="AGROH133_06090" /note="Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily; Region: PBP1_ABC_sugar_binding_like_1; cd06300" /db_xref="CDD:107295" misc_feature complement(order(1409214..1409216,1409274..1409276, 1409496..1409498,1409649..1409651,1409886..1409888)) /gene="rbsB" /locus_tag="AGROH133_06090" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107295" gene complement(1410303..1410776) /gene="rnhA" /locus_tag="AGROH133_06092" /db_xref="GeneID:10267169" CDS complement(1410303..1410776) /gene="rnhA" /locus_tag="AGROH133_06092" /EC_number="3.1.26.4" /note="Ribonuclease HI" /codon_start=1 /transl_table=11 /product="ribonuclease H" /protein_id="YP_004278707.1" /db_xref="GI:325292843" /db_xref="GeneID:10267169" /translation="MTAPLVIYADGSYDPVALSGSWAFIVFETERQIHAARGTEIGLT NNSFEVMAVMNALLWLDAQAPGRPAKLWTDSAHVMEGCHRWREIWRSNGWKRINPDSR KRKRQIPDGGLWQNVDRLLLCNPNVEIAWCKGHSGIAGNDLADALARTKMVDGGN" misc_feature complement(1410330..1410764) /gene="rnhA" /locus_tag="AGROH133_06092" /note="RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner; Region: RNase_H; cl14782" /db_xref="CDD:196818" misc_feature complement(order(1410330..1410332,1410384..1410386, 1410555..1410557,1410630..1410632,1410639..1410644, 1410738..1410749)) /gene="rnhA" /locus_tag="AGROH133_06092" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:187690" misc_feature complement(order(1410555..1410557,1410747..1410749)) /gene="rnhA" /locus_tag="AGROH133_06092" /note="active site" /db_xref="CDD:187690" gene 1410895..1411275 /locus_tag="AGROH133_06093" /db_xref="GeneID:10267170" CDS 1410895..1411275 /locus_tag="AGROH133_06093" /note="RDD" /codon_start=1 /transl_table=11 /product="RDD family protein" /protein_id="YP_004278708.1" /db_xref="GI:325292844" /db_xref="GeneID:10267170" /translation="MIFKRIVAGIVDLILLISVAFAPTFIAAEWLPQYMDAPAGQPPT PLMGVTLLWLASVLFCYFPAFESSAFMATPGKLLMRLKVVRRTGERLTFTQALYRMVF GPLAIWFLPWYRDHFSGGAIVKDR" misc_feature 1410898..1411230 /locus_tag="AGROH133_06093" /note="RDD family; Region: RDD; cl00746" /db_xref="CDD:193923" gene complement(1411340..1412113) /locus_tag="AGROH133_06098" /db_xref="GeneID:10267171" CDS complement(1411340..1412113) /locus_tag="AGROH133_06098" /EC_number="2.1.1.-" /note="methyltransferase domain; SAM-dependent methyltransferases" /codon_start=1 /transl_table=11 /product="Ubiquinone/menaquinone biosynthesis methyltransferase" /protein_id="YP_004278709.1" /db_xref="GI:325292845" /db_xref="GeneID:10267171" /translation="MDGGNFDLKEEIRDYWSKRSETFDLAFGHKIAAGAEANAWQKPI RDLVGPEPKHILELACGTGEVTRLIHDLGHEVTALDFSEAMLSVARAKHAGKPRLRFV MADAENTMEPDASYDAIICRHLVWTLTQPEETFREWFRLLRPGGRLLFFDGDWATPKP AGRLASLLIRLIDLSVGADKNYDGAQSSHHAAIMKALPFGQGLRPQMLTPLLIAAGFT GIELHSHAPIARAQRKNTNLRNRLRTFVYRRFILTCRRP" misc_feature complement(1411700..1411951) /locus_tag="AGROH133_06098" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1411748..1411750,1411796..1411804, 1411871..1411876,1411922..1411942)) /locus_tag="AGROH133_06098" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1412291..1414072) /gene="clc" /locus_tag="AGROH133_06099" /db_xref="GeneID:10267172" CDS complement(1412291..1414072) /gene="clc" /locus_tag="AGROH133_06099" /note="Chloride channel, voltage gated; Chloride channel protein EriC" /codon_start=1 /transl_table=11 /product="chloride channel protein" /protein_id="YP_004278710.1" /db_xref="GI:325292846" /db_xref="GeneID:10267172" /translation="MSTRPFRAPSMASFFDNLRSSRLRAMFRRGELGLVALAVLIGIA AGLLVALIGGLSTALHVLVFGVERLSSSELSGWIVLAGPVIGGIVLGLILFILSKTRK KPMVDPIEANALHGGRLSLTDSIIVCVQNIVSNGFGASVGLEAGYTQIASGVASKIGI KLKLRRGDMRILVGCGAAGAIAAAFNAPLTGAFYAIELIIGTYTVVTLAPLIVSALVA SIVAGLIGGHGLSIDIYDASRVTPPDYVPAIFLGVVCAFIGIVLMQTVSLIEETARKS AIPGWLRPTIGGVAVGALALISPQVLSSGHGALHLNIDADLTIYGLAGLFLLKAAASA ISIGSNFRGGLFFASLFMGSLVGKIFALCAPYIGYGSTAPVVYAVVGMSAFAAAIIGG PLTMTFLALELTGDFQITALVLAAVITTSLVVRTTFGYSFATWRFHLRGESIRSAHDI GWIRDLTVGKMMRADIRKANVSMGLPAFKEKFPLGSTQRVIMTHDDGRYAGMVLVPEI YADPMDRDPSKISLETYLNYKNDVLLPAMNARQAAAAFDATESEALVVVNDKIENRPV GLLTESHTLRRYSEELEQRRREASGEL" misc_feature complement(1412810..1413781) /gene="clc" /locus_tag="AGROH133_06099" /note="CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This...; Region: Voltage_gated_ClC; cd00400" /db_xref="CDD:79359" misc_feature complement(1412798..1413778) /gene="clc" /locus_tag="AGROH133_06099" /note="Voltage gated chloride channel; Region: Voltage_CLC; pfam00654" /db_xref="CDD:189656" misc_feature complement(order(1413029..1413043,1413635..1413649, 1413740..1413754)) /gene="clc" /locus_tag="AGROH133_06099" /note="Cl- selectivity filter; other site" /db_xref="CDD:79359" misc_feature complement(order(1413035..1413043,1413638..1413643, 1413743..1413745,1413749..1413751)) /gene="clc" /locus_tag="AGROH133_06099" /note="Cl- binding residues [ion binding]; other site" /db_xref="CDD:79359" misc_feature complement(1413641..1413643) /gene="clc" /locus_tag="AGROH133_06099" /note="pore gating glutamate residue; other site" /db_xref="CDD:79359" misc_feature complement(order(1412819..1412824,1412843..1412845, 1412867..1412869,1412891..1412893,1412900..1412902, 1413413..1413415,1413434..1413436,1413479..1413481, 1413506..1413508)) /gene="clc" /locus_tag="AGROH133_06099" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:79359" misc_feature complement(1412342..1412680) /gene="clc" /locus_tag="AGROH133_06099" /note="The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-...; Region: CBS_pair; cl10010" /db_xref="CDD:99705" gene complement(1414094..1414924) /locus_tag="AGROH133_06111" /db_xref="GeneID:10267173" CDS complement(1414094..1414924) /locus_tag="AGROH133_06111" /note="Metallo-beta-lactamase superfamily; Metal-dependent hydrolases of the beta- lactamase superfamily I" /codon_start=1 /transl_table=11 /product="metal dependent hydrolase" /protein_id="YP_004278711.1" /db_xref="GI:325292847" /db_xref="GeneID:10267173" /translation="MAIYRRRFTVLGCSSSPGVPRINGDWGACDPENPRNRRTRAAFM VEQIGPDGGKTTVVIDTGPDFREQMIAAKVEAVDAVLYTHAHADHLHGIDDLRIYFAI QQSRIPIYADPVTMARIWDGFAYCLETPPGSSYPPIVEPRIIADIDATLIIDGAGGSI PFNVHMQQHGDVHSLGFRIGNVAYCTDVSDFPVESVPKLAGLDVLVIDALQHRYHPSH LSLEQALGWIDRFAPKRAILTHMHIPLDYDTVMRETPDHVEPAYDQMRFEVELEIEAP " misc_feature complement(1414100..1414912) /locus_tag="AGROH133_06111" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(1414927..1415709) /locus_tag="AGROH133_06112" /db_xref="GeneID:10267174" CDS complement(1414927..1415709) /locus_tag="AGROH133_06112" /EC_number="3.1.21.-" /note="Deoxyribonuclease, TatD Mg-dependent; Mg-dependent DNase" /codon_start=1 /transl_table=11 /product="deoxyribonuclease" /protein_id="YP_004278712.1" /db_xref="GI:325292848" /db_xref="GeneID:10267174" /translation="MLIDTHCHLDFPDFEAERDDIIARAHASGVAQMVTISTRVRRLP ELLKIAEKYPSVFCSVGTHPNNADEELDISADELVRLAESHDKIVAIGEAGLDYFYDT QKPEDQKTGLVRHIEAARRTKLPLVIHSRSADEDMAAILREESDKGAFPFILHCFSAG PDLAKTGVELGGYVSFSGILTFPKSQDIRDIAATVPLNRLLVETDAPYLAPKRWRGKR NEPSYVVNTAEVLAEVHGISFERMAEITTENAFRCFSKMTRV" misc_feature complement(1414945..1415706) /locus_tag="AGROH133_06112" /note="TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310" /db_xref="CDD:30053" misc_feature complement(1414948..1415706) /locus_tag="AGROH133_06112" /note="putative deoxyribonuclease YjjV; Provisional; Region: PRK11449" /db_xref="CDD:171118" misc_feature complement(order(1415095..1415097,1415245..1415247, 1415323..1415325,1415686..1415688,1415692..1415694)) /locus_tag="AGROH133_06112" /note="active site" /db_xref="CDD:30053" gene complement(1415721..1417271) /gene="metG" /locus_tag="AGROH133_06113" /db_xref="GeneID:10267175" CDS complement(1415721..1417271) /gene="metG" /locus_tag="AGROH133_06113" /EC_number="6.1.1.10" /note="methionine-tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content" /codon_start=1 /transl_table=11 /product="methionyl-tRNA synthetase" /protein_id="YP_004278713.1" /db_xref="GI:325292849" /db_xref="GeneID:10267175" /translation="MTDKTPFYITTAISYPNGKPHIGHAYELIATDAMARFQRLDGMD VFFLTGTDEHGQKMQQTARAEGISPEELAQRNSDQFREMGKLLNASNDDFIRTTEERH HETSRNIWNLMADSGDIYKDSYAGWYSVRDEAYYGEDETEVRADGVRYGPQGTPVEWV EEESYFFKLSEYQDKLLKLYEENPDFIGPAERRNEIISFVKSGLKDLSISRTTFDWGI KVPDDPKHVMYVWVDALTNYITATGYIEDKNGPRAKYWPADVHIIGKDIIRFHAVYWP AFLMSAKLPLPKRVYAHGFLLNKGEKMSKSLGNVVDPVNLVNHFGLDQVRYFFMREVS FGQDGSYSEEGIATRINADLANGIGNLASRSLSMIVKNCDGQIPTPGPLTDEDKAMLA SADGLLALCREEMGKQLIHRALAAIIAVVSETDRYFASQEPWALKKTDPERMGTVLYV TAEVVRQIGILLQPFMPGSCEKLLDLVAAPADKRDFAALGEAGRLVPGTPLEAPKPVF PRYVAPEA" misc_feature complement(1415730..1417259) /gene="metG" /locus_tag="AGROH133_06113" /note="methionyl-tRNA synthetase; Reviewed; Region: PRK11893" /db_xref="CDD:183364" misc_feature complement(1416249..1417256) /gene="metG" /locus_tag="AGROH133_06113" /note="catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814" /db_xref="CDD:173907" misc_feature complement(order(1416459..1416461,1416471..1416473, 1416558..1416560,1416567..1416572,1416579..1416581, 1417116..1417118,1417227..1417229,1417233..1417238)) /gene="metG" /locus_tag="AGROH133_06113" /note="active site" /db_xref="CDD:173907" misc_feature complement(1417200..1417211) /gene="metG" /locus_tag="AGROH133_06113" /note="HIGH motif; other site" /db_xref="CDD:173907" misc_feature complement(1416354..1416368) /gene="metG" /locus_tag="AGROH133_06113" /note="KMSKS motif; other site" /db_xref="CDD:173907" misc_feature complement(1415847..1416224) /gene="metG" /locus_tag="AGROH133_06113" /note="Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957" /db_xref="CDD:153411" misc_feature complement(order(1415970..1415972,1415985..1415990, 1415994..1415999,1416147..1416152,1416159..1416164, 1416171..1416176,1416183..1416188,1416195..1416200, 1416219..1416221)) /gene="metG" /locus_tag="AGROH133_06113" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153411" misc_feature complement(order(1415970..1415972,1415988..1415990, 1416147..1416152,1416159..1416164,1416171..1416176, 1416183..1416188,1416198..1416200)) /gene="metG" /locus_tag="AGROH133_06113" /note="anticodon binding site; other site" /db_xref="CDD:153411" gene complement(1417376..1418401) /gene="holB" /locus_tag="AGROH133_06114" /db_xref="GeneID:10267176" CDS complement(1417376..1418401) /gene="holB" /locus_tag="AGROH133_06114" /EC_number="2.7.7.7" /note="catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; ATPase involved in DNA replication" /codon_start=1 /transl_table=11 /product="DNA polymerase III, delta prime subunit" /protein_id="YP_004278714.1" /db_xref="GI:325292850" /db_xref="GeneID:10267176" /translation="MSEVQGVLDGAIAPQQNTKLFGHGEAEAFLAQSYRSGKGHHAIL IEGPEGIGKATLAFRFANHVLTHPDPATAPDFLADPDTESLVSRQITSGASHNLLHLT RPADEKTGRVKSAITVDEVRRAGHFFSQTSGTGNWRIVIIDPADDLNRNAANAILKIL EEPPKRAMFLVLSHAPGKLLPTIRSRCMPLRLLPLSDADMVQSLDHLGISPAGEKRDA LLSASKGSVAQALKLMNYGGSDIVEALASVMTAEGPGARKQMHKLAEVLAQKDGDIVL GFFMEHVTEELMARARAAAMAGDISAAEKHARLSSTLSERITVAQAYNLDKKQMVLSI LEDVRGV" misc_feature complement(1417385..1418401) /gene="holB" /locus_tag="AGROH133_06114" /note="DNA polymerase III subunit delta'; Validated; Region: PRK09112" /db_xref="CDD:169667" misc_feature complement(<1417844..>1417984) /gene="holB" /locus_tag="AGROH133_06114" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene complement(1418394..1419068) /gene="tmk" /locus_tag="AGROH133_06115" /db_xref="GeneID:10267177" CDS complement(1418394..1419068) /gene="tmk" /locus_tag="AGROH133_06115" /EC_number="2.7.4.9" /note="thymydilate kinase" /codon_start=1 /transl_table=11 /product="Thymidylate kinase" /protein_id="YP_004278715.1" /db_xref="GI:325292851" /db_xref="GeneID:10267177" /translation="MAEKTGLFISFEGGEGAGKSTQIRTLAEALRDRGFDVIVTREPG GSPGAEAVRHVLLSGAAESFGVRMEAILFAAARNDHVEEVIRPALERGAIVLCDRFLD SSRVYQGTTGNLEPDFIETLQRVAIDGVVPELTLIFDIAAEKGLARARKRADEGAAPD RFEKEEIETHEKRREAYLDIALAEPRRCRIVNADQPEDKVTEDVMSFVEPLLERLETA AGTAHE" misc_feature complement(1418430..1419059) /gene="tmk" /locus_tag="AGROH133_06115" /note="thymidylate kinase; Validated; Region: tmk; PRK00698" /db_xref="CDD:179089" misc_feature complement(1418442..1419050) /gene="tmk" /locus_tag="AGROH133_06115" /note="Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting...; Region: TMPK; cd01672" /db_xref="CDD:30190" misc_feature complement(order(1418613..1418615,1418748..1418750, 1418772..1418777,1418838..1418840,1418850..1418852, 1419009..1419011)) /gene="tmk" /locus_tag="AGROH133_06115" /note="TMP-binding site; other site" /db_xref="CDD:30190" misc_feature complement(order(1418490..1418492,1418625..1418627, 1419006..1419008)) /gene="tmk" /locus_tag="AGROH133_06115" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:30190" gene complement(1419206..1420378) /gene="dac" /locus_tag="AGROH133_06116" /db_xref="GeneID:10267178" CDS complement(1419206..1420378) /gene="dac" /locus_tag="AGROH133_06116" /EC_number="3.4.16.4" /note="Beta-lactamase-type transpeptidase fold, penicillin binding protein" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase" /protein_id="YP_004278716.1" /db_xref="GI:325292852" /db_xref="GeneID:10267178" /translation="MHKAIHRSFLPVAAALAFAFFGNGPAQAQTQTAPFIAKAEQAYM IDAETGTVLLSQNENQSFPPASLAKLMTVEVILDALAKGQVTPETAYPVSEYAWRTGG APSRTSTMFAALKSSVSVNDLLTGIIVQNANDGCIIVAEGMAGSDSAFAKRMTVRAGE LGMNRSVFANSTGLPDPGNQTTAKDMVLLAQHLRDTYPDRYGLFTKPDFEWNRIFQRN KNSLLGNGIDGLGLGFAEGSGFAAVVSAEREGRRVYLALGSIADDKTRQDEARRVVDW GLTAFEKRHLFAKDEAVGSVSVYGGDVSHIDLSPREDVSVLVPVNNPERISGRIVYRW PLNAPLDTGANVGTLKVFSGERLLREVPLYTRTAVGKGTLTQNAAGALKELLLFWL" misc_feature complement(<1419812..1420300) /gene="dac" /locus_tag="AGROH133_06116" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" misc_feature complement(1419209..1420297) /gene="dac" /locus_tag="AGROH133_06116" /note="D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: DacC; COG1686" /db_xref="CDD:31872" misc_feature complement(1419266..1419538) /gene="dac" /locus_tag="AGROH133_06116" /note="Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; pfam07943" /db_xref="CDD:191901" gene complement(1420455..1421615) /gene="rlpA" /locus_tag="AGROH133_06118" /db_xref="GeneID:10267179" CDS complement(1420455..1421615) /gene="rlpA" /locus_tag="AGROH133_06118" /note="Rare lipoprotein A -like double-psi beta-barrel; Lipoproteins" /codon_start=1 /transl_table=11 /product="rare lipoprotein A" /protein_id="YP_004278717.1" /db_xref="GI:325292853" /db_xref="GeneID:10267179" /translation="MAGACIEANEGAVLRACKQRGADDLKSTVKKLGINARSGVKWLA ISVLCAATASCSTTSETKPKQKRSKEYFSESEYGVKASPRVADGQNIPKGGGRELLGN AYTVKGRRYFPKEEPGYNKTGLASWYGSAFHGRLTANGEVYDKEHLSAAHPTFPLPSY ARITNMENGASVLVRVNDRGPFHEGRLIDVSSKTADLLDMKGTGTANVRVQYAGRAPL DGHDMPYLMASYVPKGSRSPGVAPEGQIATGVMVASASPNFVPAPTSNPNYGASTQTA LVGTKKNAALQAMPLVNGPAPAFEQFAILPEIGPFLAERPEGNFTREPAAPGGNYLRV PTPSSKYAAAYSEESSAVSRTSRAFDSVLVDRGALNEDSILAHVKRQQAKTR" misc_feature complement(1420815..1421507) /gene="rlpA" /locus_tag="AGROH133_06118" /note="Lipoproteins [Cell envelope biogenesis, outer membrane]; Region: RlpA; COG0797" /db_xref="CDD:31140" misc_feature complement(1420986..1421252) /gene="rlpA" /locus_tag="AGROH133_06118" /note="Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; cl04011" /db_xref="CDD:186611" gene 1421863..1422201 /locus_tag="AGROH133_06119" /db_xref="GeneID:10267180" CDS 1421863..1422201 /locus_tag="AGROH133_06119" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278718.1" /db_xref="GI:325292854" /db_xref="GeneID:10267180" /translation="MIKSIKTAGLALGIALVSIAAPIHASAQDMELRIGPDGVRPVIR DRDRDMDRRGPPRMRGCGEREARAAAREAGLRDPEVVRVTPGRVVVQGFTRRGPERIT FANERGCPEL" gene complement(1422336..1422425) /locus_tag="AGROH133_06122" /db_xref="GeneID:10267181" tRNA complement(1422336..1422425) /locus_tag="AGROH133_06122" /product="tRNA-Ser" /db_xref="GeneID:10267181" gene complement(1422514..1422678) /locus_tag="AGROH133_06123" /db_xref="GeneID:10267182" CDS complement(1422514..1422678) /locus_tag="AGROH133_06123" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278719.1" /db_xref="GI:325292855" /db_xref="GeneID:10267182" /translation="MSRRMDKSGIFFVALLLVLVAIVLSLALFHSPQQSPALPSGEGS LLPPATTQGQ" gene complement(1423010..1423237) /locus_tag="AGROH133_06126" /db_xref="GeneID:10267183" CDS complement(1423010..1423237) /locus_tag="AGROH133_06126" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278720.1" /db_xref="GI:325292856" /db_xref="GeneID:10267183" /translation="MTVPQQPNGAPPRRKPIWPWIVLLVLTLCAIYSYNRANEIILEL SDTLPPALLNLFEDIFRGGFRRGDGGPSIGV" gene complement(1423253..1423516) /locus_tag="AGROH133_06128" /db_xref="GeneID:10267184" CDS complement(1423253..1423516) /locus_tag="AGROH133_06128" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278721.1" /db_xref="GI:325292857" /db_xref="GeneID:10267184" /translation="MAARDRYSRKLECSKCGHQGFAEVSESDEKDRRNLDFRVDEMPR GFRTERASVDPTEFMIRCGQCGNIFRFLQKTAYAPGGEPRVKA" gene 1423654..1424364 /locus_tag="AGROH133_06129" /db_xref="GeneID:10267185" CDS 1423654..1424364 /locus_tag="AGROH133_06129" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278722.1" /db_xref="GI:325292858" /db_xref="GeneID:10267185" /translation="MHNEAPLLSSSLIRRAIIIAVIIICFVAALNIGVKWYGERILQA GHTTATDAVEITIGNDLLKLAKNTLRVPSDRHDGERERADLYLTWPGLKGYEDSNRAV FDDPAQAAGLIFIQLSQSTMSEDMSGRFGPIYARLTEGEPVPLKHGLTLHRLRADAGY GKEVILTGQREGESDYVVRCLLPQTQQESTGSDCQRDIHAGQDLSLFYRFSATLLPQW KELDAGVKRYIEQRLVKD" gene 1424585..1426027 /gene="dac" /locus_tag="AGROH133_06131" /db_xref="GeneID:10267186" CDS 1424585..1426027 /gene="dac" /locus_tag="AGROH133_06131" /EC_number="3.4.16.4" /note="Beta-lactamase-type transpeptidase fold, penicillin-binding protein" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase" /protein_id="YP_004278723.1" /db_xref="GI:325292859" /db_xref="GeneID:10267186" /translation="MVRFVALTLAAAFITATSVGTAQADPKYAGIVIDAKTGKVLYGE DPDGLRYPASLTKMMTLYLTFEALNSGRISLDSKVPVSANAAKEPPSKLGVRAGGSIT VEQAILALVTRSANDMATALGEYIGGSEDRFARMMTAKARALGMTRTTYRNANGLPNT AQMTTARDQARLGIALRQHFPQYYGYFSTRTFNFGKQVIGNHNRLVGTVRGVDGIKTG YTRAAGSNLATSAQLDGRSIVAVVLGGRSSAARDATMRKLVATYLPQASRSGNSNLIA QTRSAPVEEPVAVAVAAPPVAVAAPSAAVAATDSGLPHAGPVPQTRYEDAPVTAFAGS SSNAAVKAMEAATWQKGKDPISQVAVAPDRKLITNSTKVDNIVTASTPASVPSTPSVS AKAEAPQGGWVIQIGASPDENSARGLLQNAQEKGGAALRSAKPFTVAFSREGSQVYRA RFGGFDGQAAAVNACNALKKKGVSCWASLQ" misc_feature 1424666..1425313 /gene="dac" /locus_tag="AGROH133_06131" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" misc_feature 1424669..1425325 /gene="dac" /locus_tag="AGROH133_06131" /note="D-alanyl-D-alanine carboxypeptidase; Region: Peptidase_S11; pfam00768" /db_xref="CDD:189710" misc_feature 1425776..1426015 /gene="dac" /locus_tag="AGROH133_06131" /note="Sporulation related domain; Region: SPOR; cl10051" /db_xref="CDD:186898" gene 1426112..1426372 /locus_tag="AGROH133_06134" /db_xref="GeneID:10267187" CDS 1426112..1426372 /locus_tag="AGROH133_06134" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278724.1" /db_xref="GI:325292860" /db_xref="GeneID:10267187" /translation="MAVNENYSDIASGNGQGSLSVLHPIHEAAMRIADLGLNRSKAKT RDLVSLLLSHGARAWRANQPEANIHLHVGRRSGRAPVHIRIR" gene complement(1426466..1429258) /gene="gyrA" /locus_tag="AGROH133_06135" /db_xref="GeneID:10267188" CDS complement(1426466..1429258) /gene="gyrA" /locus_tag="AGROH133_06135" /EC_number="5.99.1.3" /note="negatively supercoils closed circular double-stranded DNA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit A" /protein_id="YP_004278725.1" /db_xref="GI:325292861" /db_xref="GeneID:10267188" /translation="MTDQSPPGGGKLPPGIEPISIIEEMQRSYLDYAMSVIVSRALPD VRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKFHPHGNAAIYDALARMAQ DWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGT LHEPVVIPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALIDNPAIELLELMQ IISGPDFPTGALIMGRSGIRSAYETGRGSVIMRGRATIEPMRGDREQIIITEVPYQVN KATMIEKMAELVKEKRIEGISDLRDESDRQGYRVVVELKRDANAEVILNQIYRYTPLQ TSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRAHVLVGLAI SVANIDEVIRVIRHAPDPASAREELMTRRWPAQDVESLIRLIDDPRHRINEDGTYNLS EEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLEILSSRLRIMQIVKDELIAI RDEFGTPRRSEIVEGGPDMDDEDLISREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGR SGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPL EPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLEEEG DEILSVETCTDQDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMADGDRIISMT IVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVAEEGELSEERYQELKARE EFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIGELVAAFPVDEGDQIML VSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDEEAENGNGED VADTLPDTPEAPESEA" misc_feature complement(1426565..1429186) /gene="gyrA" /locus_tag="AGROH133_06135" /note="DNA gyrase subunit A; Validated; Region: PRK05560" /db_xref="CDD:180128" misc_feature complement(1427735..1429147) /gene="gyrA" /locus_tag="AGROH133_06135" /note="DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in...; Region: TOP4c; cd00187" /db_xref="CDD:29149" misc_feature complement(order(1428758..1428760,1428767..1428838, 1428842..1428898,1428902..1429051,1429064..1429147)) /gene="gyrA" /locus_tag="AGROH133_06135" /note="CAP-like domain; other site" /db_xref="CDD:29149" misc_feature complement(1428869..1428871) /gene="gyrA" /locus_tag="AGROH133_06135" /note="Active site [active]" /db_xref="CDD:29149" misc_feature complement(order(1427846..1427896,1428014..1428019, 1428050..1428061,1428068..1428076)) /gene="gyrA" /locus_tag="AGROH133_06135" /note="primary dimer interface [polypeptide binding]; other site" /db_xref="CDD:29149" misc_feature complement(1427507..1427650) /gene="gyrA" /locus_tag="AGROH133_06135" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(1427183..1427320) /gene="gyrA" /locus_tag="AGROH133_06135" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(1427033..1427176) /gene="gyrA" /locus_tag="AGROH133_06135" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(1426712..1426864) /gene="gyrA" /locus_tag="AGROH133_06135" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" misc_feature complement(1426565..1426705) /gene="gyrA" /locus_tag="AGROH133_06135" /note="DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989" /db_xref="CDD:190822" gene 1429476..1430105 /locus_tag="AGROH133_06136" /db_xref="GeneID:10267189" CDS 1429476..1430105 /locus_tag="AGROH133_06136" /note="Multiple antibiotic resistance (MarC)-related proteins; Multiple antibiotic transporter" /codon_start=1 /transl_table=11 /product="multiple antibiotic resistance protein" /protein_id="YP_004278726.1" /db_xref="GI:325292862" /db_xref="GeneID:10267189" /translation="MASSETLINALTTLLVTLDPPGLAPVFLALTVGMTRDQRAQVAL RGSIIAFGILAIFALFGLTILNLLGISLGAFRIAGGLLLFWISFEMIFEKRQERKEKT SEIAITKDHLHNLAVFPLALPLIAGPGAISATVLLAGTMKTTLEMVVLILILAFAMAL VYATLIVSERMDRFLGNTGRAILTRLLGVLLAALSVQFVVDGIKSAFAF" misc_feature 1429491..1430096 /locus_tag="AGROH133_06136" /note="MarC family integral membrane protein; Region: MarC; cl00919" /db_xref="CDD:186259" gene 1430229..1431377 /locus_tag="AGROH133_06143" /db_xref="GeneID:10267190" CDS 1430229..1431377 /locus_tag="AGROH133_06143" /note="HPP family; CBS-domain-containing membrane protein" /codon_start=1 /transl_table=11 /product="CBS domain-containing membrane protein" /protein_id="YP_004278727.1" /db_xref="GI:325292863" /db_xref="GeneID:10267190" /translation="MRSTLRRLIPDAAPVSNRERLRAAAGAFVGISLTGLLGSLAFRL DPTLPAMIAPMGASAVLLFAVPSSPLAQPWSILCGNIVSAYVGVTVALLVPDIFLASA LAISLAIAAMMALRCLHPPSGAVALTAILGGPAVHSLGYGFILWPVAGNSLILLILAL VYNNATGRAYPHGLRFGKASHGTADPTPIQKIGFSSADLDEVLKEYDEVLDIDRDVLE MILRKTELRSWRRRALHIDCASVMSRDVVGVAPDDSLRHAHSLMHNHHFKALPVTNDR AEIVGIVTQTDFLEKASWRHGRPSIGSLQRLRLILSGASAPNDTVKDIMTSPVRTVQP ETAIEEAIIRFAEEGLHYLPVIDANGKMVGILSQSDVMVAMLADKAAA" misc_feature 1430229..1431374 /locus_tag="AGROH133_06143" /note="CBS-domain-containing membrane protein [Signal transduction mechanisms]; Region: COG3448" /db_xref="CDD:33251" misc_feature 1430379..1430744 /locus_tag="AGROH133_06143" /note="HPP family; Region: HPP; pfam04982" /db_xref="CDD:191148" misc_feature <1430802..1431095 /locus_tag="AGROH133_06143" /note="The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-...; Region: CBS_pair; cl10010" /db_xref="CDD:99705" misc_feature 1430955..1431350 /locus_tag="AGROH133_06143" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is...; Region: CBS_pair_HPP_assoc; cd04600" /db_xref="CDD:73100" gene complement(1431444..1432019) /gene="ssb" /locus_tag="AGROH133_06149" /db_xref="GeneID:10267191" CDS complement(1431444..1432019) /gene="ssb" /locus_tag="AGROH133_06149" /note="binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA" /codon_start=1 /transl_table=11 /product="Single-stranded DNA-binding protein" /protein_id="YP_004278728.1" /db_xref="GI:325292864" /db_xref="GeneID:10267191" /translation="MQLPVTMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIA NLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCKVVEQYVKKGAKLYIEGQLQTRK WQDQTGNDRYSTEVVLQGFNSTLTMLDGRGEGGGGSRSGGDIGGGDYGSGGGNYGGGY DQQSAARGGASRGGSQPSGGFSSDMDDDIPF" misc_feature complement(1431657..1431956) /gene="ssb" /locus_tag="AGROH133_06149" /note="SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496" /db_xref="CDD:72968" misc_feature complement(order(1431678..1431680,1431687..1431689, 1431720..1431722,1431747..1431749,1431813..1431815, 1431819..1431821,1431864..1431872,1431945..1431956)) /gene="ssb" /locus_tag="AGROH133_06149" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:72968" misc_feature complement(order(1431669..1431671,1431675..1431677, 1431714..1431719,1431723..1431725,1431729..1431731, 1431753..1431758,1431798..1431800,1431804..1431806, 1431810..1431812,1431816..1431818,1431822..1431827, 1431861..1431866,1431885..1431887,1431915..1431917, 1431933..1431941)) /gene="ssb" /locus_tag="AGROH133_06149" /note="ssDNA binding site [nucleotide binding]; other site" /db_xref="CDD:72968" misc_feature complement(order(1431735..1431737,1431741..1431743, 1431747..1431749)) /gene="ssb" /locus_tag="AGROH133_06149" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:72968" gene 1432378..1435206 /gene="uvrA" /locus_tag="AGROH133_06150" /db_xref="GeneID:10267192" CDS 1432378..1435206 /gene="uvrA" /locus_tag="AGROH133_06150" /note="The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; Excinuclease ATPase subunit" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit A" /protein_id="YP_004278729.1" /db_xref="GI:325292865" /db_xref="GeneID:10267192" /translation="MTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPD VDRIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQ TVSQMVDRILAFEEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRVKVDGQFYEIAD VPVLDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAVAEFADKPLPPEET SAGGSANKSLNETHERMLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPTCDGLGSQ QKVDENLIVPEPARTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEA QHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPNLERRWKETDSAWAREEIERYMSA APCPACAGYRLKPEALAVKINRMHIGEVTQMSIRMARDWFETLPENLNAKQNEIAVRI LKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSI GLHQRDNARLLDTLKHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEG TPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGARGNNLKNVTAAVPLG VFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHERIDGFEFIDKVIDIDQSP IGRTPRSNPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIK IEMHFLPDVYVTCDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRD KLQALFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFH DVNKLLEMLQALVDQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDI VKNERSYTGHFLKELLERRPAGKREAAE" misc_feature 1432378..1435173 /gene="uvrA" /locus_tag="AGROH133_06150" /note="excinuclease ABC subunit A; Reviewed; Region: uvrA; PRK00349" /db_xref="CDD:178984" misc_feature 1432378..>1432644 /gene="uvrA" /locus_tag="AGROH133_06150" /note="The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep...; Region: ABC_UvrA_I; cd03270" /db_xref="CDD:73029" misc_feature <1433737..1434075 /gene="uvrA" /locus_tag="AGROH133_06150" /note="The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep...; Region: ABC_UvrA_I; cd03270" /db_xref="CDD:73029" misc_feature 1434187..1435059 /gene="uvrA" /locus_tag="AGROH133_06150" /note="The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep...; Region: ABC_UvrA_II; cd03271" /db_xref="CDD:73030" gene 1435263..1436063 /locus_tag="AGROH133_06151" /db_xref="GeneID:10267193" CDS 1435263..1436063 /locus_tag="AGROH133_06151" /note="Protein of unknown function DUF72; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278730.1" /db_xref="GI:325292866" /db_xref="GeneID:10267193" /translation="MSTSGTIRTGIGGWTFEPWEGTFYPEKLPKKRQLEHASRQLTAI EVNGTYYSSQKPETFAKWAADVPEDFVFSLKASRFVTNRKVLAEAGESMTKFLTQGLT ELGHHLGPILWQFAPTKKFDAEDFGAFLALLPEKQDGISLRHVVEVRNPTFQVPEFID LLAKHKVAVVCADHHDYPMLPDVTADFVYCRLQKGEDDIETCYPKAEIDHWAKRVKTY AAGGVPDDLPLIAPDRKVEKTPRDVFAFFITGGKVNAPNGAQVLQKLV" misc_feature 1435329..1436060 /locus_tag="AGROH133_06151" /note="Protein of unknown function DUF72; Region: DUF72; cl00777" /db_xref="CDD:186183" gene complement(1436069..1437028) /locus_tag="AGROH133_06152" /db_xref="GeneID:10267194" CDS complement(1436069..1437028) /locus_tag="AGROH133_06152" /EC_number="1.-.-.-" /note="Dihydrouridine synthase, DuS; tRNA-dihydrouridine synthase" /codon_start=1 /transl_table=11 /product="tRNA-dihydrouridine synthase A" /protein_id="YP_004278731.1" /db_xref="GI:325292867" /db_xref="GeneID:10267194" /translation="MIDWTDTRCRFLHRQLSKRALLYTEMIVADAIIHGQRDRLLNYH TQEHPVALQLGGSDPVKLSEAVRIASDYGYDEINLNVGCPSDRVQSGTFGACLMREPE IVAQCVAAMKAVAKVPVTVKCRIGVDDQEPEAVLPDFLSRVVAAGADAVWIHARKAWL QGLSPKENREVPPLDYDLVYRMKRANPDIFIGINGGISDLDQASLHLHHMDGVMLGRA AYHNTSILADVDHRIYGEEARQADWMGLRDAMMAYAADYIAAGGRLNHVTRHMVGLFQ GMPGARRFRQILSSDATRPGAGTEVIEAAFAAVDFNPAKEMAG" misc_feature complement(1436081..1437028) /locus_tag="AGROH133_06152" /note="tRNA-dihydrouridine synthase A; Provisional; Region: PRK11815" /db_xref="CDD:183323" misc_feature complement(1436327..1437028) /locus_tag="AGROH133_06152" /note="Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and...; Region: DUS_like_FMN; cd02801" /db_xref="CDD:73368" misc_feature complement(order(1436378..1436383,1436441..1436443, 1436447..1436449,1436567..1436569,1436663..1436665, 1436789..1436791,1436870..1436872,1436951..1436953, 1437026..1437028)) /locus_tag="AGROH133_06152" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73368" misc_feature complement(order(1436378..1436380,1436441..1436446, 1436558..1436563,1436567..1436572,1436657..1436659, 1436663..1436665,1436777..1436782,1436870..1436872)) /locus_tag="AGROH133_06152" /note="active site" /db_xref="CDD:73368" misc_feature complement(order(1436561..1436563,1436567..1436569, 1436657..1436659,1436780..1436782)) /locus_tag="AGROH133_06152" /note="catalytic residues [active]" /db_xref="CDD:73368" misc_feature complement(order(1436441..1436446,1436558..1436560, 1436570..1436572,1436663..1436665,1436777..1436779)) /locus_tag="AGROH133_06152" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73368" gene 1437208..1438281 /locus_tag="AGROH133_06153" /db_xref="GeneID:10267195" CDS 1437208..1438281 /locus_tag="AGROH133_06153" /note="DNA breaking-rejoining enzyme, catalytic core; Integrase" /codon_start=1 /transl_table=11 /product="phage integrase family protein" /protein_id="YP_004278732.1" /db_xref="GI:325292868" /db_xref="GeneID:10267195" /translation="MGTITARKRKDGSVGYTAQILRKKGGRIVFREAKTFDRKREAEA WVRFRETEIDKPGALERLNANRFTLADAIDRYVKEKGTMGATKDQVLRTIKTFNLATM DCSDIRSDDIVTFANELAEGRKPQTVGSYISHLSSIFSIARPAWGMPLDPVAIRDAQT VLRKLNTIANSESRTRRPTLAELDKIMEYFTKRNQATPHVSRMDRVVAFAIYSTRRQE EIVRIEWEDLDEVHSRILVRDLKHPGQKKGNDVWCEIPPEAMQIIKAMPKNGPRIFPY GTAGVGAAFTRACQFLEIEDLHFHDLRHEGISRLFEMGRTIPLAASVSGHRTWNSLKR YTQIRERGDKFEGWKWLKTVTDE" misc_feature 1437586..1438236 /locus_tag="AGROH133_06153" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature 1437733..1438230 /locus_tag="AGROH133_06153" /note="Phage integrase family; Region: Phage_integrase; pfam00589" /db_xref="CDD:144254" misc_feature order(1437853..1437858,1437928..1437930,1438099..1438107, 1438210..1438212) /locus_tag="AGROH133_06153" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" misc_feature order(1437853..1437855,1437928..1437930,1438105..1438107, 1438114..1438116,1438183..1438185,1438210..1438212) /locus_tag="AGROH133_06153" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature order(1437853..1437855,1438105..1438107,1438114..1438116, 1438183..1438185,1438210..1438212) /locus_tag="AGROH133_06153" /note="active site" /db_xref="CDD:29495" gene complement(1438552..1438992) /locus_tag="AGROH133_06154" /db_xref="GeneID:10267196" CDS complement(1438552..1438992) /locus_tag="AGROH133_06154" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278733.1" /db_xref="GI:325292869" /db_xref="GeneID:10267196" /translation="MPVCAFGQHPVFYTSCRYPRPNGLTSCTTRSTTARAGGGNQSTE ETFMNPEIANLIAARLAAPKKFEVVTLFADGTSRSHKTEKRGQAENYAIGEKRKVGRS LINGETGATVVVTDVYVASLLCPPADACRRLVARHNHQLADFLD" gene complement(1439034..1439288) /locus_tag="AGROH133_06155" /db_xref="GeneID:10267197" CDS complement(1439034..1439288) /locus_tag="AGROH133_06155" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278734.1" /db_xref="GI:325292870" /db_xref="GeneID:10267197" /translation="MVNNVLSANAEGMPDFPNLEAEVCDVFNSTRIALDYITAQLVAH MDHDDANTAAYILHDAATRAEILKNKFYAAMDAHHAAKRR" gene 1439355..1439606 /locus_tag="AGROH133_06156" /db_xref="GeneID:10267198" CDS 1439355..1439606 /locus_tag="AGROH133_06156" /note="Lambda repressor-like, DNA-binding" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278735.1" /db_xref="GI:325292871" /db_xref="GeneID:10267198" /translation="MSIRKVSIRQIKAARAMLDWSQSDMAAASGVSEPTIKRLEAASG ELGGRIETIDKIVASLEAAGVIFVSQGETAQGYGVTVKQ" misc_feature 1439385..1439537 /locus_tag="AGROH133_06156" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene 1440191..1441231 /locus_tag="AGROH133_06158" /db_xref="GeneID:10267199" CDS 1440191..1441231 /locus_tag="AGROH133_06158" /note="DNA breaking-rejoining enzyme, catalytic core; Integrase" /codon_start=1 /transl_table=11 /product="integrase family protein" /protein_id="YP_004278736.1" /db_xref="GI:325292872" /db_xref="GeneID:10267199" /translation="MSGASLKGLAKVKKTLTSGKTIYYCYAWRGGPLLKNDKGEPIQP GDHLIKSAFRRAHDERRAPSPTDLSSLITLYRGSSDFRRTKLGTRHEYDRYLDKIRMQ FDRLSLEELQQPSTRGAFKEWRDSLADTPRTADFAWMVLVRVLSFAKDRGMISVNIAE RGGRLYRSTRRDRTWSDADVAAFEAVAPSQMRLAIQLALWTGQRKGDLLRLSWCDFDG ANLRFIQSKTKARVLVPMGYLADVLCSQKGTGAILRTSRGSAWTSAGFNTSWRKCCAK AGITDLTFHDLRGTAITRMALAGCTVPEIAAVTGHSLKDVEAILDMHYLGGRTELAAS AMRKMVAVTQDQ" misc_feature 1440692..1441123 /locus_tag="AGROH133_06158" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature order(1440800..1440802,1440869..1440871,1441043..1441045, 1441052..1441054,1441121..1441123) /locus_tag="AGROH133_06158" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature order(1440800..1440802,1441043..1441045,1441052..1441054, 1441121..1441123) /locus_tag="AGROH133_06158" /note="active site" /db_xref="CDD:29495" misc_feature order(1440800..1440805,1440869..1440871,1441037..1441045) /locus_tag="AGROH133_06158" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" gene complement(1441644..1441826) /locus_tag="AGROH133_06159" /db_xref="GeneID:10267200" CDS complement(1441644..1441826) /locus_tag="AGROH133_06159" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278737.1" /db_xref="GI:325292873" /db_xref="GeneID:10267200" /translation="MQNVLHERLDRGSAVTVMPCNYVVYRIGFPVSSFWAHVLILLFQ SRKTSLVMKKARAPAP" gene 1442011..1442382 /locus_tag="AGROH133_06161" /db_xref="GeneID:10267201" CDS 1442011..1442382 /locus_tag="AGROH133_06161" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278738.1" /db_xref="GI:325292874" /db_xref="GeneID:10267201" /translation="MIEYGDHSMPSLLSKIAKDIIKCPRPFEGFSDRCRLRYHARARS LIETLKQAPPTAVKVKEIRNWEIVVAKCNYCGHVSNIQHWQLNRVAKTDTTVDDIAKR LKCKRCNTKGDVKITIAKMPR" gene 1442385..1443047 /locus_tag="AGROH133_06162" /db_xref="GeneID:10267202" CDS 1442385..1443047 /locus_tag="AGROH133_06162" /note="Protein of unknown function DUF159; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278739.1" /db_xref="GI:325292875" /db_xref="GeneID:10267202" /translation="MCNLYRVKTNQESIRDIVGTMQERLNLEPDIEIYPDRSAPVVRN GDNGRELAGLTWGMPSPQFVTQGKPDTGVTNIRNVTSPHWRRWLRPENRCVVPWTMFC EWEDTQPRKTKRWFAINEAAPLAFFAGIWTEWNGVRGSMKNPRGGEHQLFAFLTTDPN SVVKPIHPKAMPVILTNKDEIETWLTAPWEEAKALQRPLPDDGLVLLPVEEERPQQDL FG" misc_feature 1442388..1442975 /locus_tag="AGROH133_06162" /note="Uncharacterised ACR, COG2135; Region: DUF159; cl03646" /db_xref="CDD:194657" gene 1443057..1443470 /locus_tag="AGROH133_06163" /db_xref="GeneID:10267203" CDS 1443057..1443470 /locus_tag="AGROH133_06163" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278740.1" /db_xref="GI:325292876" /db_xref="GeneID:10267203" /translation="MRIRPYLLEKHGVYAKFPMNEGDFVGATKASHDALDPRILDEVD RDSDLTAFTGYVATELLADDDDIPTGARTEILFSQRKGIAAILYDHPNISDAFIEWVF CSSAEDALDKWKKKVRWPLIETSNGPIDITGNTII" gene 1443625..1443840 /locus_tag="AGROH133_06164" /db_xref="GeneID:10267204" CDS 1443625..1443840 /locus_tag="AGROH133_06164" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278741.1" /db_xref="GI:325292877" /db_xref="GeneID:10267204" /translation="MITRISRQKNAEQRLAMALRQLNDAIKEVHKTGLDVDISTLTMH TSRGPMTQVNLKTFRAEGAPPVLRVVE" gene 1444084..1444320 /locus_tag="AGROH133_06165" /db_xref="GeneID:10267205" CDS 1444084..1444320 /locus_tag="AGROH133_06165" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278742.1" /db_xref="GI:325292878" /db_xref="GeneID:10267205" /translation="MPRYFFHVRDAEGLSVDMEGAVLSTDEQARHEAVQAAREMLSEK ILKDEVVDGSSFEVIRGDGHLIARIPLKSVMRFK" gene complement(1444869..1445213) /locus_tag="AGROH133_06166" /db_xref="GeneID:10267206" CDS complement(1444869..1445213) /locus_tag="AGROH133_06166" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278743.1" /db_xref="GI:325292879" /db_xref="GeneID:10267206" /translation="MTGPEIMAVGGFFVLLFGFLFGLWKYVDAKISAAKMEASGAASA ASAMASLAREELAAHRLHVAETYVSKSGLREQTEQIMGAIGAVKDAVDKMTLRVDRIV ENQSKPRATRAS" gene complement(1445331..1445591) /locus_tag="AGROH133_06168" /db_xref="GeneID:10267207" CDS complement(1445331..1445591) /locus_tag="AGROH133_06168" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278744.1" /db_xref="GI:325292880" /db_xref="GeneID:10267207" /translation="MARQGGGGLMIIAKLKGYLAAIGTALAILAGVFLYGQRAGRTAA KDEQAAANAKAIKKAGDVEHEIKNLGDDDVDRRLTQWMRDKR" gene complement(1445564..1446487) /locus_tag="AGROH133_06170" /db_xref="GeneID:10267208" CDS complement(1445564..1446487) /locus_tag="AGROH133_06170" /EC_number="3.2.1.17" /note="glycoside hydrolase, family 24, peptidoglycan binding domain; Phage-related lysozyme (muraminidase)" /codon_start=1 /transl_table=11 /product="Lysozyme" /protein_id="YP_004278745.1" /db_xref="GI:325292881" /db_xref="GeneID:10267208" /translation="MPITKISTQGRAFVRLHEGNPLTCYLDPVGIPTIGTGFTMGSDS VRRELAKIGITKLVPGKTKITAAQSDVILDAVLAAEYVPAVVAGSPENRKQHELDAAA SVTFNLGVGAMNWTWADLWRKGQIKKAAAHLASNYNTAKGKKLPGLVRRRKEEALLFE KGIYTGVGMTKEVTAEPPVLPDPVVKEAQELLTTAGLNPGAIDGWMGAKTKAAVIAYQ KAHPHLIADGIIGPATIAQLRRDASAAKDVVAKGASSAVGSGLLAFTAGLPWGWIAAG VLVAVVGYVTYRNRDVIARRWNSWRGKEVVV" misc_feature complement(1446023..1446472) /locus_tag="AGROH133_06170" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" misc_feature complement(1446434..1446436) /locus_tag="AGROH133_06170" /note="catalytic residue [active]" /db_xref="CDD:29558" misc_feature complement(1445774..1445947) /locus_tag="AGROH133_06170" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene complement(1447322..1447720) /locus_tag="AGROH133_06172" /db_xref="GeneID:10267209" CDS complement(1447322..1447720) /locus_tag="AGROH133_06172" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278746.1" /db_xref="GI:325292882" /db_xref="GeneID:10267209" /translation="MAYVQRNGDGEINGIYSNFQEGIAEEALSEDNQEVLAFLNPVRI TDYENAIQNLVDSTAHERQFRDGVTLASYTASTKPKWAAEAQAFVAWRDNVWFYAYGE LAKVQAGQRPQPTVEQFLGEIAPIAWPVAS" gene complement(1447720..1449531) /locus_tag="AGROH133_06173" /db_xref="GeneID:10267210" CDS complement(1447720..1449531) /locus_tag="AGROH133_06173" /note="Carbohydrate-binding family V/XII" /codon_start=1 /transl_table=11 /product="hypothetical fusion protein" /protein_id="YP_004278747.1" /db_xref="GI:325292883" /db_xref="GeneID:10267210" /translation="MANTTWYGDGTATVAVGSRTVTGTDTGWLTPVAGLTPIKAGDKY GIHVGRPIVIEKIISDTELLLADDWPGPAQTDAPYKVELTSPTIAAVEAMRRLLASLS NGNLDSLSEITVGTDDIPIGIGPGVFGTIKKYELKDGVQFDEAVPDLAGRTAYDAAAA DFRVLVANIGDGRSALYIKNSATSGDWSVPYPITGAVGPAGVNQRGNYSAGTAYAIRD IVQYGGSTWIAKVATTGNAPPTLPVTENTQWLLFARSGTPGVVDRGTYSGATAYEAND IVLNNGSTWLALQSTTGNAPPTLPTESNAYWRLLARKGTDGSGTGDFTGPAGGVAAGD IVAFADTTGKTGRKAAQNELKAAIGGLPIAGYISPGFNLANNAADAANDIDFPAGVVA SEAANPILMAHAAGTAQLDVAYGTGNGGRFDSAISDGTWHCFIISNGTTTSRGLSKSI DPTTQPNYPAGFAHYRRVASWIRASGSLIAMTQNGDDFEFSEGNVERNSTAAQASVLL TIRAPEGIITEPWLTITMQMSNVNGNIQTQMASAGKAVDAVAIVSLANEIKNFRATSG FKTNTNSQIQFAAVGFSGALNLNVLSTLGWTDKRGKA" misc_feature complement(1448812..1448916) /locus_tag="AGROH133_06173" /note="Chitin/cellulose binding domain. Putative carbohydrate binding domain found in many different glycosyl hydrolase enzymes. May occur in tandem arrangements; Region: ChtBD3; cl00046" /db_xref="CDD:193627" gene complement(1449524..1449739) /locus_tag="AGROH133_06174" /db_xref="GeneID:10267211" CDS complement(1449524..1449739) /locus_tag="AGROH133_06174" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278748.1" /db_xref="GI:325292884" /db_xref="GeneID:10267211" /translation="MTTGNTMQVDALVALHEAEVREEFLKQRTLLLSQHLAMQKQENK ILLDKINGLEADLRVARGEIDGDPANG" gene complement(1449755..1452628) /locus_tag="AGROH133_06175" /db_xref="GeneID:10267212" CDS complement(1449755..1452628) /locus_tag="AGROH133_06175" /note="Phage-related protein, tail component" /codon_start=1 /transl_table=11 /product="phage tail fiber protein" /protein_id="YP_004278749.1" /db_xref="GI:325292885" /db_xref="GeneID:10267212" /translation="MAIFSGIATAISGAISAVSSFIGGLGVVGSFLLKTAVGVGVSLL AQSLAGKTKDPTFSINGTLQGGGDISRSFILGKTATAGSLVFVNTWGRDGDTPNAYLT QVIALSDMPIRGLVELWVNGERVTLGASSERGQAVNEYPDSLWIKFYDGTQTTADSFL FSSVSNGNRWWNPDRIGRGVAYAIVTARVSKNMFSGVPSFKFVLEGMRLYDPSRDSTV GGVGGQRYADPATWGGDGDFLPAVQIYNLLRGISYNGQWFYGLQNMAAARLPALAWIA QIEKHRAGTLESTGWVNTYRSGGEVQVEAPLTSAVEALLTACQGKISEVGGVYYLHSG APDAPVIAFTDDDILSTEEQEFTPFLGLADTINGVSANYPSPQDGWVSKTAPPLYRTD LEAIDGNRRLMADVDLNFVPYAEQVQRLMRSALEEARRFRRHTIVLPPRFWAYATPGT VFSWTSERNGYIAKLMRLDGVADRANLDIMVDITEVDPADYDWNTGADFQPPVDGQLG VIRPTPQPIVDWFAEPATIKDAAGDDRRPAIRLTWDNTDGRLDDVVGIEYEVRLQATL DKVSEGRTDQPQVGSMLISQSLLPNESYVVRGRYIPGGDRPVVWSGFIPVITPNVLLS DKDVFVDVDLSGVEDALGWLRNSTRTAQDAIDGLIAAQMEMATVAYKDTRNLARELSV ELGAARAEYREDIQLAVNETMAVAGKVETLTAALGGNSASVNIAWAALATPAGYAARY GVTAAVNDGQYRSAALLLDVPANPSSPTRLVGFADQFVIASGDMSVIKQPFVVQDGVL YANDIRVNKLSAFTSVLGNVNIEEAYIGNLQVGTSNIASGAISDAFEVSQSGSTPQSL VVNHGTGAPRIYLFYSSELVTANNQIGAQIRYDINNDTDGGVIGSIGSVNPGVNNGDI VSASSFRIFVPPSGRTQTTFRISRFAPVNLTTSARLIAMVLRR" gene complement(1452672..1453100) /locus_tag="AGROH133_06177" /db_xref="GeneID:10267213" CDS complement(1452672..1453100) /locus_tag="AGROH133_06177" /codon_start=1 /transl_table=11 /product="GCN5-related N-acetyltransferase" /protein_id="YP_004278750.1" /db_xref="GI:325292886" /db_xref="GeneID:10267213" /translation="MDVRFATAEDRDRVVALLRDSHEAAGFTFPFQAAYADQLFQQHM RSPMACVLVTGERAQGVLMAAAFDHPFGVGSIAKETVWYVAPEARGRGAIKMLDAYEA WARSVGCVSVGMASLATNDVSSLYERRGYSAVETHFMKPL" misc_feature complement(1452675..1453097) /locus_tag="AGROH133_06177" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(1453100..1453765) /locus_tag="AGROH133_06178" /db_xref="GeneID:10267214" CDS complement(1453100..1453765) /locus_tag="AGROH133_06178" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278751.1" /db_xref="GI:325292887" /db_xref="GeneID:10267214" /translation="MRNISAENLAALEARQLVARDFLWFVARDRATGAPVTDGMWSDV GNVSAAVVHPDTGLPVTRDWYGSGTLVQIDDIPLVANLSVQNVNIRLSQVSEHVQTLV RLYDCKQARVEIYRGLFDPDSRQMVAPAECRFVGFVDTITITTPSENEEGSVTMVCAS HTQEMTRSNPATRSHATQVLRQAGDAFYQDADTSSEWEFFWGSEKGKVATQPKRKKFL GIF" gene 1453963..1454517 /locus_tag="AGROH133_06179" /db_xref="GeneID:10267215" CDS 1453963..1454517 /locus_tag="AGROH133_06179" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278752.1" /db_xref="GI:325292888" /db_xref="GeneID:10267215" /translation="MVIEKSVLAFEKRFMAVSLTTFMAAYFVALVAPLFLAKKVVDFA AADYWLIWPVNLYYISQIEAHFGSLNGWNTFLLSNYIASSMMICRLVALLVLELRRPK HTFNWGISFVHAMIMPVVLVGLLLPFGEGRSRGLTFYSSPFGNSLASTLLVAFFYFGA TDPLVKFISWIKFILFSRRESEIS" gene complement(1454748..1455458) /locus_tag="AGROH133_06184" /db_xref="GeneID:10267216" CDS complement(1454748..1455458) /locus_tag="AGROH133_06184" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278753.1" /db_xref="GI:325292889" /db_xref="GeneID:10267216" /translation="MLLGKCAVPSFVPLRSLNGGYTMTITYPLPTSFFDEFPGWSTEF NLLWRQEQSRTAGGQTVVKDLGSPLWQMTAQSRSMKPNELDYWRARLTSLENGLKTFR AFPKSRCFPVAYPNGSWPTGGAFTGVGQVATIASNRKAISLLGLPAGYKVTVGDYIQI GDKDVHMVMEPMTASAGGVTTQFEVRPHLWPGVTAPVAATLVKPSCIMAIVPGSISTT ADMATGRGTVTFQAIETR" gene 1455479..1455973 /locus_tag="AGROH133_06185" /db_xref="GeneID:10267217" CDS 1455479..1455973 /locus_tag="AGROH133_06185" /note="Protein of unknown function DUF892; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278754.1" /db_xref="GI:325292890" /db_xref="GeneID:10267217" /translation="MKSLADIFEHTLQDVYYAENAITKALPKVAKAAQSAELKTAAED HLAETKDQIKKLDQVFKSIGKKASGEKCDAIEGLIKEADGLMKEAEGTALDAGLLAAC QAVEHYEIARYGSLREWAKDLGHDEAHKILSEILDQEKATNNKLTNLAVTSINKTSAA KKAA" misc_feature 1455494..1455928 /locus_tag="AGROH133_06185" /note="YciF bacterial stress response protein, ferritin-like iron-binding domain; Region: YciF; cd07909" /db_xref="CDD:153118" misc_feature order(1455506..1455508,1455518..1455520,1455692..1455700, 1455707..1455709,1455719..1455721,1455734..1455736, 1455776..1455781,1455785..1455787,1455800..1455802, 1455812..1455814,1455821..1455823) /locus_tag="AGROH133_06185" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153118" misc_feature order(1455533..1455535,1455611..1455613,1455623..1455625, 1455632..1455634,1455794..1455796,1455803..1455805, 1455815..1455817,1455893..1455895) /locus_tag="AGROH133_06185" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:153118" gene complement(1456030..1458231) /locus_tag="AGROH133_06186" /db_xref="GeneID:10267218" CDS complement(1456030..1458231) /locus_tag="AGROH133_06186" /note="Phage-related minor tail protein" /codon_start=1 /transl_table=11 /product="tail component of prophage protein" /protein_id="YP_004278755.1" /db_xref="GI:325292891" /db_xref="GeneID:10267218" /translation="MQDRINSMVGIGTTAAKEWNGVLADQQKELDRLRAKYSPLFATI SNYRNAVAEIRQAHAAGAISANEMASAIQRERQAALASTAAIKGRNAALKATVTTSSG NSFNTANIAAQFQDIGVTAAMGMSPIQIALQQGTQLSAVLQQIKDSGQGVGQGLAAAF ASVISPLSLVTIGVIAAATAAFQYFSTIMSEGDKSAEVLKEQAALISSVAERWGDAIP ALREYADELKRAQNVADLTKGADIVNAKTLEGVRAEVDKAVVSFADLLDLLRLAGEKA DTITNLQVAFDKFAGSAEEGKVQTEEVKRVQDALVAAINGTGLQAASDFADKFNDLAA AALVAAGNVQKVNDATSRMTDITTWRSYNPNSGKLETNADPWADNIQNPGFMTPEFGP TPDRRPSDLDTDKNRGFGTPKRARAPTKTASDRFAEDLQAVRDRTEALRQEMSLIGLS NEAQTKRRTALDLEQKALADLREDARKKGEKDLESITLSPDKIAAIEQESAAYARQSE ALRQAQEQQQKLNEWNNVARDATRGFIDDLIQGESAADAFAGALSRIADALLDDVLAS LFKVNSAAGGSGGLLSSFLGLFGGGGFASLPMTGPVPTARPGFSDGGYTGDGGKYQPA GVVHKGEYVFDKAAVKAAGGPAAMEAMRRNLKGYANGGAVGVSVPSIPSLRPANDNAV QVNYAPVIDARGADAEAVARLERVVAKQGAEMQGRVEAAVRSAQKRNVKLG" misc_feature complement(<1457725..1457919) /locus_tag="AGROH133_06186" /note="Prophage tail length tape measure protein; Region: TMP_2; pfam06791" /db_xref="CDD:148412" gene complement(1458708..1458824) /locus_tag="AGROH133_06187" /db_xref="GeneID:10267219" CDS complement(1458708..1458824) /locus_tag="AGROH133_06187" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278756.1" /db_xref="GI:325292892" /db_xref="GeneID:10267219" /translation="MTEFTLAVKGKAEANGGNKAVAPPSDAEIDELIKKYGG" gene complement(1458908..1459267) /locus_tag="AGROH133_06188" /db_xref="GeneID:10267220" CDS complement(1458908..1459267) /locus_tag="AGROH133_06188" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278757.1" /db_xref="GI:325292893" /db_xref="GeneID:10267220" /translation="MADAEKPFPLEVNGARGEVGLWVGKEPLVIVAEMGGLAAVSSRL SCKSMSDLFLRLSGVEPAATVAALDLLTVRGDKISAIGALKLKHFGAVAKAISEALSH HFDEEDEGNGEAAQKAA" gene complement(1459269..1459700) /locus_tag="AGROH133_06189" /db_xref="GeneID:10267221" CDS complement(1459269..1459700) /locus_tag="AGROH133_06189" /note="Predicted secreted protein" /codon_start=1 /transl_table=11 /product="phage major tail protein" /protein_id="YP_004278758.1" /db_xref="GI:325292894" /db_xref="GeneID:10267221" /translation="MADGQQIGRTLLIQIGDGETPEVFSNLCGLTTRSFNMSANEVDT TITDCVNPENTPQKTAEPGIKNRTFSGSGKFVKSASNTAFMTHVNDATKFNAKVIVPG LGTYTGPWFVSEFEFSGEMEGNMEFTATFVAAGVLTFVAEV" misc_feature complement(1459284..1459679) /locus_tag="AGROH133_06189" /note="Phage major tail protein 2; Region: Phage_tail_2; cl11463" /db_xref="CDD:196245" gene complement(1459735..1460145) /locus_tag="AGROH133_06190" /db_xref="GeneID:10267222" CDS complement(1459735..1460145) /locus_tag="AGROH133_06190" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278759.1" /db_xref="GI:325292895" /db_xref="GeneID:10267222" /translation="MASPDLELQGAIVARLKARSSLTAIVAQRIYDRPPTNAAFPYVE YGESQVIRDDVGCLKSNLIYVTIHVWSQYSGGFKELKEIIHEVVEASDEAPLVLPSHR LISITRQDTRHFKDPDEVTTHGVVEFVARVETPA" gene complement(1460145..1460639) /locus_tag="AGROH133_06191" /db_xref="GeneID:10267223" CDS complement(1460145..1460639) /locus_tag="AGROH133_06191" /note="Phage protein, HK97, gp10" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278760.1" /db_xref="GI:325292896" /db_xref="GeneID:10267223" /translation="MIKAKVLGREALTKKLNQVAPLANKYAAEAKLQIATEAADKISD RAPISNSATAGDYAASIQGGKISDRPSAKALVGASASKDPDATGVFAAWIWHFLEFGT RPHNVAKGGGTVAGRKRRDGARMHPGTRAQPHVFPTWRSMKAKAKKKISDAISRGVRE AMKN" gene complement(1460636..1460992) /locus_tag="AGROH133_06192" /db_xref="GeneID:10267224" CDS complement(1460636..1460992) /locus_tag="AGROH133_06192" /note="Conserved hypothetical protein CHP01563" /codon_start=1 /transl_table=11 /product="phage head-tail adaptor" /protein_id="YP_004278761.1" /db_xref="GI:325292897" /db_xref="GeneID:10267224" /translation="MPKRKRAGAGSLSERIGFEAEVEGDDGYGGVVVGFAEQFVEPAR LEPRVGSEPVIASRLQGLQPYTMTVRSNERTRTITSAWQARNKRSGVVYAIKAAVNID ERNQWIELLVVQGEAS" misc_feature complement(1460657..>1460890) /locus_tag="AGROH133_06192" /note="Phage head-tail joining protein; Region: Phage_H_T_join; cl11461" /db_xref="CDD:196243" gene complement(1461118..1461465) /locus_tag="AGROH133_06193" /db_xref="GeneID:10267225" CDS complement(1461118..1461465) /locus_tag="AGROH133_06193" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278762.1" /db_xref="GI:325292898" /db_xref="GeneID:10267225" /translation="MAIVDLETVKKHLRVFHEDEDVEIGLYRDAAESIVTQHLDREVV AMGETPTAADGIAATPAIVSAILLVAGDLYEVREPDPKATGDAVLPRAVRMLLAPWRV WRTVADDYVAPIP" misc_feature complement(1461163..1461453) /locus_tag="AGROH133_06193" /note="Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; Region: gp6; cd08054" /db_xref="CDD:153446" misc_feature complement(order(1461166..1461171,1461178..1461183, 1461187..1461201,1461205..1461207,1461235..1461243, 1461247..1461255,1461259..1461267,1461274..1461276, 1461283..1461291,1461355..1461357,1461364..1461369, 1461376..1461381,1461385..1461390,1461397..1461402, 1461424..1461426,1461430..1461435,1461442..1461444)) /locus_tag="AGROH133_06193" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153446" gene complement(1461467..1461808) /locus_tag="AGROH133_06194" /db_xref="GeneID:10267226" CDS complement(1461467..1461808) /locus_tag="AGROH133_06194" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278763.1" /db_xref="GI:325292899" /db_xref="GeneID:10267226" /translation="MLSTKVRKRRVASYIGAGIVNGIGSPVNSVAPAITGTAQVGQTL TSTTGTWSGSPTYARQWFAAGVAISGATAATYVPVVGDVGKAITVRVTATNAKGSVPV TSAPTAAVVAA" gene complement(1461786..1462052) /locus_tag="AGROH133_06198" /db_xref="GeneID:10267227" CDS complement(1461786..1462052) /locus_tag="AGROH133_06198" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278764.1" /db_xref="GI:325292900" /db_xref="GeneID:10267227" /translation="MTDFLEVKAKRTFAVGKELKTKKSDPFKVEAGEAKQLDELGLVE IIGEVKADASVEDDAADEAADKPVISSARSTKKKDKPDAVNEGS" gene complement(1462100..1463302) /locus_tag="AGROH133_06199" /db_xref="GeneID:10267228" CDS complement(1462100..1463302) /locus_tag="AGROH133_06199" /note="Phage major capsid protein, HK97" /codon_start=1 /transl_table=11 /product="phage major capsid protein, HK97 family" /protein_id="YP_004278765.1" /db_xref="GI:325292901" /db_xref="GeneID:10267228" /translation="MADNQLADKIGELGTSLASIKEQVGNLATDFTSKLAANGEVSAE LKEKTDKALSELGDVTTRLSDMEKRAARERVGGDPGEKSLGDIVVEAAGAQSFDSSYR GMIKVKADRAAITSANTTVGAGRSQGTSLVPGARVPGIFGLPERQLTIRDLVMPGQTA SSSIEYVKETGFTNNAAPVAETTAKPYSDLTFDMTSSPVRVLAHLFKASRQILDDAPA LRSYIDGRARYGLRFVEENQLLNGSGTGQNLHGLVPQATAFNPAFAAADETAIDRLRL AVLQVVLAEYPATAFVLNPIDWAKIELTKDAGGNYIIGNPQGSLTPTLWNLPVVSTQA MAAGEFLTGAFSFAAQIFDRMDIEVLLSSENVDDFEKNLFTIRAEERLAFAVYRPESF VTGDVEGA" misc_feature complement(1462112..1462921) /locus_tag="AGROH133_06199" /note="Phage capsid family; Region: Phage_capsid; pfam05065" /db_xref="CDD:147312" gene complement(1463314..1464432) /locus_tag="AGROH133_06200" /db_xref="GeneID:10267229" CDS complement(1463314..1464432) /locus_tag="AGROH133_06200" /note="Peptidase family S49, SppA_dom: signal peptide peptidase SppA, 36K type; Periplasmic serine proteases (ClpP class)" /codon_start=1 /transl_table=11 /product="peptidase S49" /protein_id="YP_004278766.1" /db_xref="GI:325292902" /db_xref="GeneID:10267229" /translation="MKFEHLISAFSAEPWAIQREKLGVLADVLVARAEGEKLFSSEFA ASIDDARAKEIAESTGSVAIIPVYGVLADKMDLFSAMSGGTSYAGIKKALHKALSNAD IKAVVLDIDSPGGTVPGTDELATEIRKLRGGEKPIIAQVNSLAASAAYWIAASTDEIV VTPSGRAGSIGVYTAHDDLSAALEQRGIKRTYISAGKHKVEGNETEPLGKDTLAHVQD GVNRSYNRFVASVAEGRGVTVSKVEDNFGQGRVFYAEALMDRGMVDRIATLDETLARY GADVEPAPVRRIKAANAAKAEAAQTLVAKMTAGEQITKREFENGIRGLMGLSGSEAER AARLYLKDGQGAPDVDADAAALAAIDRLIAEAKSPLIR" misc_feature complement(1463608..1464252) /locus_tag="AGROH133_06200" /note="Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_36K_type; cd07022" /db_xref="CDD:132933" misc_feature complement(order(1463665..1463667,1463674..1463676, 1463680..1463688,1463761..1463763,1463908..1463919, 1463941..1463943,1463947..1463949,1463992..1463994, 1464106..1464108,1464229..1464231)) /locus_tag="AGROH133_06200" /note="tandem repeat interface [polypeptide binding]; other site" /db_xref="CDD:132933" misc_feature complement(order(1463755..1463757,1463767..1463769, 1463851..1463865,1463869..1463871,1464070..1464072, 1464148..1464150,1464169..1464171)) /locus_tag="AGROH133_06200" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132933" misc_feature complement(1463992..1463994) /locus_tag="AGROH133_06200" /note="active site residues [active]" /db_xref="CDD:132933" gene complement(1464442..1465671) /locus_tag="AGROH133_06201" /db_xref="GeneID:10267230" CDS complement(1464442..1465671) /locus_tag="AGROH133_06201" /note="Phage portal protein; Phage-related protein" /codon_start=1 /transl_table=11 /product="phage portal protein, HK97 family" /protein_id="YP_004278767.1" /db_xref="GI:325292903" /db_xref="GeneID:10267230" /translation="MGFFERWVGRPIKLTDGEFWRGFFGLGTTSGETVTIESALSLDA VWACVNLVQNAAGTLPCIVYGEDGVTVDKNAPLYELLHDMPNMDDTAPEFWSMAAMCL LLDGNFFAEKKMNGERLVALNPLHPLSVDVCRSKDGRNTRYYEVTEDGKKRRVPEGKM FHVRGVRLPGCDRGMSPIGVVRNTVGSALAGEKVAGRMFKNGLLSSLIVSSDQILKPE QRKQISDTLTQFAGAEKAGGVTVLEAGFKPYPMSINPKDAQFLEARQYSVEQICRIFG VPPVMIGHAANGTTTWGSGIEQLILQFTKTCMRPMLKRIEAAIYRDLLDAKTRKTTKV KFNMEELLRGDSTARAEFLSKMVTNGIYLVDEARSYEDKAPVDGGNKAIVNGTMTRLD SLGKTETPAPTPAARAA" misc_feature complement(1464529..1465611) /locus_tag="AGROH133_06201" /note="Phage-related protein [Function unknown]; Region: COG4695; cl01923" /db_xref="CDD:194210" misc_feature complement(1464556..1465596) /locus_tag="AGROH133_06201" /note="Phage portal protein; Region: Phage_portal; pfam04860" /db_xref="CDD:147162" gene complement(1465696..1467339) /gene="terL" /locus_tag="AGROH133_06202" /db_xref="GeneID:10267231" CDS complement(1465696..1467339) /gene="terL" /locus_tag="AGROH133_06202" /note="Phage Terminase; Phage terminase-like protein, large subunit" /codon_start=1 /transl_table=11 /product="terminase large subunit" /protein_id="YP_004278768.1" /db_xref="GI:325292904" /db_xref="GeneID:10267231" /translation="MLSEAVVGAIKCGPIPVLRDWRGLPTSELTRGEKMCRFIEEYLV VPEGALVGQPIRLLDFQVAFILSVYDNPNGTSRAYLSIARKNSKTATIACLLLGHVIG PEAFPNSRIMSGARSRDQAAEVFNYASKMLMMSPRLKGLYRIVPSGKMIVGLRKNVVY RASSAEAKSAHGGSPLVAILDEVGQIKGPHDDFVEAIVTSQGAYGDKAMIFAISTQAA TDGDLFSRWLDDAETSKAPRTVSHLYTAPADCDVLDEEAWKAANPALGKFKSVSSVRD DAERASRMPTEEASFRWLHLNQRIDANAPFVSPAIWRACNARVVDFDGLPVFGGLDLS EVSDLTALVLMAPKEQDRKTVWHVKPTFWLPGDGIRAKAKADRVPYDIWHKDGHLEAA PGRTVDYEFVAHYLRDRFEEMDIRKIAFDRWNFRHLKPWLQKAGFTDDQLEGDDAVFQ PFGQGFQSMSPALRELESIILNGNLAHGDHPVLTMCMMNATIKADPAGNRKLVKHNRE RRIDGAVALAMATAMAGTYEGGDSGDLDDFVNNIISVTW" misc_feature complement(1465804..1467162) /gene="terL" /locus_tag="AGROH133_06202" /note="Phage Terminase; Region: Terminase_1; pfam03354" /db_xref="CDD:112181" gene complement(1467352..1467807) /gene="terS" /locus_tag="AGROH133_06203" /db_xref="GeneID:10267232" CDS complement(1467352..1467807) /gene="terS" /locus_tag="AGROH133_06203" /codon_start=1 /transl_table=11 /product="terminase small subunit" /protein_id="YP_004278769.1" /db_xref="GI:325292905" /db_xref="GeneID:10267232" /translation="MSEKKSRVDSVDEAVRIASAASEDIQFPENVPLDDGDVPFFKNV IAEYARADWSAHQLEIAAMLARTMADLVREQDLLRTEGSVAVTEKGTPVANPRKSVVQ MHASSILSFRRSLALHARAVQGEARDAAKRRDRAKEIEAGASVDDELLA" gene complement(1468229..1469110) /locus_tag="AGROH133_06204" /db_xref="GeneID:10267233" CDS complement(1468229..1469110) /locus_tag="AGROH133_06204" /note="Restriction endonuclease" /codon_start=1 /transl_table=11 /product="HNH endonuclease domain-containing protein" /protein_id="YP_004278770.1" /db_xref="GI:325292906" /db_xref="GeneID:10267233" /translation="MVDGLFGGLVAANDNVERVCPMCGSAVSGPKSKKFCCAKCRRAN ERLNRDLDAERIRREELAPERVCEHCGAIFRRRTDSKNAARFCSRRCGFDAGSNISES QRLRSAAASMNVSFIVKVCRCAACGSRFRATNMAEKYCGQDCRDKFTRERYIAANDNG RDRSERPCAECGTYFAPEYGDRRRMFCSSECSVKKARRVTHRKNRARLRNAFVENVDP ISVFERDGWTCRDCGLATPREKRGTYDADAPELDHIMPLSLGGAHSYMNTQCLCRSCN AKKGNTPPQQVSLFAYG" misc_feature complement(1468268..>1468363) /locus_tag="AGROH133_06204" /note="HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins...; Region: HNHc; cl00083" /db_xref="CDD:193649" gene complement(1469291..1469367) /locus_tag="AGROH133_06205" /db_xref="GeneID:10267234" tRNA complement(1469291..1469367) /locus_tag="AGROH133_06205" /product="tRNA-Met" /db_xref="GeneID:10267234" gene complement(1469500..1470450) /locus_tag="AGROH133_06207" /db_xref="GeneID:10267235" CDS complement(1469500..1470450) /locus_tag="AGROH133_06207" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278771.1" /db_xref="GI:325292907" /db_xref="GeneID:10267235" /translation="MSDHEEDQIIDATGRVAFTGDQRHPYRTNTRFRKVDGKWEPIEE TKTRDAPRALPSAEERAADRHRAKTKAADEARKMAKVRRVIVKRQSIGDPSCVQSRGE DFPLLEALRRDEREDLVAVVLRYRRLVALCEAEPLKGLDYSKADGAEVVRETKRLTPE ADIDRAAASDWKDVPDGEIKVSTKVKKSKGSHAIPPRRTVVAANDNTASGSVIKTESL HVKITDEILNEHIDAKPILAELRYAMGPLVEPFEDAVLGGQSYSEIGRAKGEGAKPAV AGRALVGMAIGTISVKWQEIDKREERLAELALARFRNRAA" gene complement(1470447..1470863) /locus_tag="AGROH133_06208" /db_xref="GeneID:10267236" CDS complement(1470447..1470863) /locus_tag="AGROH133_06208" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278772.1" /db_xref="GI:325292908" /db_xref="GeneID:10267236" /translation="MNAANDNIQGSGRGRRPKTPEFIRWASLDTRGLTLEEAFASWGE RDLYMQEDCRFGGTEKSLWHDGCILTFETYRAAKNGSLVQGPDVHGIALPDTIDADGG YARSWHTKWYWQYEPALARLEKRRARINEILQEDAA" gene complement(1470907..1471380) /locus_tag="AGROH133_06209" /db_xref="GeneID:10267237" CDS complement(1470907..1471380) /locus_tag="AGROH133_06209" /note="VRR-NUC" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278773.1" /db_xref="GI:325292909" /db_xref="GeneID:10267237" /translation="MGKATSQTTRINGKRVVIRTSATGKVSLKDAPIKESEGQAAQVR ALRALPEYGRQFLLAGDMNSAKRGPRAQADAIATGMTPGEADLRIYLKGGKLRMIENK VGKGRLSPAQVERHASLARLGHPVEVVRFTSTGEASSKAVSLVRQWLADNDNTGH" misc_feature complement(1470991..>1471197) /locus_tag="AGROH133_06209" /note="VRR-NUC domain; Region: VRR_NUC; pfam08774" /db_xref="CDD:149740" gene complement(1471513..1471692) /locus_tag="AGROH133_06210" /db_xref="GeneID:10267238" CDS complement(1471513..1471692) /locus_tag="AGROH133_06210" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278774.1" /db_xref="GI:325292910" /db_xref="GeneID:10267238" /translation="MKESDMPENEMQPYTVEQLQQKYAVSLHVAVEVLEHFRGDRSKI DKFMKRCPNRDDEKH" gene 1471783..1471977 /locus_tag="AGROH133_06211" /db_xref="GeneID:10267239" CDS 1471783..1471977 /locus_tag="AGROH133_06211" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278775.1" /db_xref="GI:325292911" /db_xref="GeneID:10267239" /translation="MRDLNKNIIGRPDDPKATRGSTWRPRAKDEDIVTINDEGAPPVP VGQPGDREQGTESDGPVGGQ" gene complement(1472165..1472266) /locus_tag="AGROH133_06213" /db_xref="GeneID:10267240" CDS complement(1472165..1472266) /locus_tag="AGROH133_06213" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278776.1" /db_xref="GI:325292912" /db_xref="GeneID:10267240" /translation="MHSVAEVARHKFNIAFPEISEMAVPMETGTVSY" gene 1472365..1473372 /locus_tag="AGROH133_06214" /db_xref="GeneID:10267241" CDS 1472365..1473372 /locus_tag="AGROH133_06214" /note="Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="YP_004278777.1" /db_xref="GI:325292913" /db_xref="GeneID:10267241" /translation="MIYDELLSGGETAIASLIGRQETLQLEFKANDPRDPIFANGELT KPGRKILAKEISAFANSAGGLLVFGVDCRVVDKVDQADKLTPIPSLARAETAVRDAAS ELLQPRHDGIRVASIPSVEELDTGYIIIDVPRSERRPHRSEATDQKQYFKRSGASAFA MEHYDIEDAFRRVSTPDLTFEASYEYYQQIGEEYKYKIKFAVENVSDVTAKMINLQLS DIKGIHFEQDPYTVPIVRETYYDGKTHLAGPIDFALHPGERRIFHHYKFTAHTNLDGS VRCGGIPLMVGSLRLSYSLSAENMRMKFGTYQLSGDEMCVFEPVISAAERRKLLGFNR P" misc_feature 1472428..1472835 /locus_tag="AGROH133_06214" /note="Divergent AAA domain; Region: AAA_4; pfam04326" /db_xref="CDD:190944" gene 1473584..1474444 /locus_tag="AGROH133_06215" /db_xref="GeneID:10267242" CDS 1473584..1474444 /locus_tag="AGROH133_06215" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278778.1" /db_xref="GI:325292914" /db_xref="GeneID:10267242" /translation="MRQIILTISLTATVVVGAWIYWAFNSVRIAHWALDSIYIPAQAG PWGDSFGAYNALFGALGATAVVGTLLLQARALRIQQEDQHRLRFEANFFQLLGVIREN REDVRFANSKEYLLAHLQAKPGIKREHFAFRAAYREMRYAVIGARRSEQSITVDQLAK LYAESVHVRYESTLGAYFRLVYETLDRVERDDRLTDKEKDEFGNLVRGQMTSFEVAIA GCNALNDFAKDFKRLIIRFRLLKYAKKGEVYDELVKHYPSETFQGRETNRPPIPESVE DVDDDKGWDE" gene complement(1474589..1476832) /gene="repA" /locus_tag="AGROH133_06218" /db_xref="GeneID:10267243" CDS complement(1474589..1476832) /gene="repA" /locus_tag="AGROH133_06218" /note="Bifunctional DNA primase/polymerase, N-terminal; RecA-family ATPase" /codon_start=1 /transl_table=11 /product="regulatory protein RepA" /protein_id="YP_004278779.1" /db_xref="GI:325292915" /db_xref="GeneID:10267243" /translation="MTLNAHSTFSAVGSPPPLPDMPSPVDVALSYNDKSWPVFPCRSH AEEHVDQGTGEIITLGEKTPLTPNGFKGATLNRPLIERMWTKYPKAAVGLPTGEKTGF FALDIDNKPGGANGFDWLSEMEAEHGPLPDTARVTSPNGGLHIYFKYVVGTRNRGALG AGVDIRSEGGYVLAAGSTMANGRSYKWETDTREIADAPAWLLDLLLPKSAPAHTQYSL SAATNNAYVDAAVDRELADLAGAPMGSRNNALNDAAFSIGTIVGAGALGESEARALLQ DVARGWGRDWSRCCKTIENGLKAGIQNPRHIPEPEFPVQDNTPMMDQDAISRFIVNSV AKRLARLEEKVAANDNVAIGPVFSIFDWTVDRFKGEPPKVEYLVDGVMPAGVPGMVSA MGDTGKSYAMLELHRRVSFGSTTYDTPIFGGKVLARGTSVMITSEDDANEIHRRIAAL DHKEHRFSELGRKMIVVPLPSAGGAQAFWKDDKKKGLQETEHYHRICDQLSEIDDLRL VTFDPLASFAHLPLNEDPAAGQFVCTSLSRLATETGATVLVAHHMRKTQKPIETLSDA RDSIRGSTALVDGLRLAYAMWPAEEARARKVCKMVGVDFMPGKVVLGGVVKANGAARR VISTYVRNDHGLLVDKTALLGSATPPTGDLIGALVVTIEAAANAGAPFTKSGASGVFE MRERLPDELKALSKSRLHSLVDDALSKTVIVRAAAKGEKIAKWLDVPGGYFATGLGSF TTGAVRI" misc_feature complement(1476260..1476664) /gene="repA" /locus_tag="AGROH133_06218" /note="Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol). These primpol domains belong to the...; Region: Prim_Pol; cd04859" /db_xref="CDD:80309" misc_feature complement(order(1476341..1476343,1476401..1476403, 1476509..1476511,1476515..1476517,1476647..1476649)) /gene="repA" /locus_tag="AGROH133_06218" /note="polymerase nucleotide-binding site; other site" /db_xref="CDD:80309" misc_feature complement(order(1476302..1476304,1476320..1476322, 1476632..1476634,1476644..1476646)) /gene="repA" /locus_tag="AGROH133_06218" /note="DNA-binding residues [nucleotide binding]; DNA binding site" /db_xref="CDD:80309" misc_feature complement(order(1476320..1476322,1476341..1476343, 1476401..1476403,1476407..1476412,1476419..1476421, 1476509..1476511,1476515..1476517,1476554..1476556)) /gene="repA" /locus_tag="AGROH133_06218" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:80309" misc_feature complement(order(1476341..1476343,1476401..1476403, 1476509..1476511,1476515..1476517)) /gene="repA" /locus_tag="AGROH133_06218" /note="primase nucleotide-binding site [nucleotide binding]; other site" /db_xref="CDD:80309" misc_feature complement(1474916..1475680) /gene="repA" /locus_tag="AGROH133_06218" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(order(1475636..1475644,1475654..1475659)) /gene="repA" /locus_tag="AGROH133_06218" /note="Walker A motif; other site" /db_xref="CDD:29986" misc_feature complement(order(1475294..1475299,1475525..1475530, 1475534..1475536,1475636..1475644,1475654..1475656)) /gene="repA" /locus_tag="AGROH133_06218" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29986" misc_feature complement(1475297..1475311) /gene="repA" /locus_tag="AGROH133_06218" /note="Walker B motif; other site" /db_xref="CDD:29986" gene complement(1477289..1477579) /locus_tag="AGROH133_06219" /db_xref="GeneID:10267244" CDS complement(1477289..1477579) /locus_tag="AGROH133_06219" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278780.1" /db_xref="GI:325292916" /db_xref="GeneID:10267244" /translation="MSMNLLCGNGPSIEDIKNVCDALKSTRVDWVQAFTSGEDGPFAR KELAQLQSIIMAFEAVIGETDSMEASATPEGKLDAAIEDIKRVAAAREAGLI" gene 1478350..1479039 /locus_tag="AGROH133_06220" /db_xref="GeneID:10267245" CDS 1478350..1479039 /locus_tag="AGROH133_06220" /EC_number="3.7.1.2" /note="Fumarylacetoacetate (FAA) hydrolase family, HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene- 1,7-dioic acid hydratase (catechol pathway)" /codon_start=1 /transl_table=11 /product="fumarylacetoacetate hydrolase" /protein_id="YP_004278781.1" /db_xref="GI:325292917" /db_xref="GeneID:10267245" /translation="MAATVIPVPEPVLLPVEGTNEMFPVRRVYCVGRNYADHAIEMGH DPSREPPFYFQKNPDNLLPAGQDFPYPSLSSNVHYEVECVVVLKSGGADILAGDALGH VWGYAVGIDMTRRDLQDGLKKMGRSWEGAKAFEYSAPVSAIVPADKIGHPSTGAIWLN VNGERKQTGDLAQMIWKVPEVIAELSKLFTLAAGDVIMTGTPAGVGPIVRGDRIECGV DGVGTLSVTVA" misc_feature 1478428..1479036 /locus_tag="AGROH133_06220" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene 1479077..1479610 /locus_tag="AGROH133_06221" /db_xref="GeneID:10267246" CDS 1479077..1479610 /locus_tag="AGROH133_06221" /EC_number="2.3.1.-" /note="Trimeric LpxA-like, phenylacetic acid degradation protein PaaY; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily" /codon_start=1 /transl_table=11 /product="ferripyochelin binding protein" /protein_id="YP_004278782.1" /db_xref="GI:325292918" /db_xref="GeneID:10267246" /translation="MPLYRLADRVPQTPATDRYWVAPDANVIGSVILAEDVGIWFGAT LRGDNDPISIGRGTNIQDGVMVHSDLGFAATIGEMCTIGHHAIIHGCTIGDNSLVGMG ATILNGAKIGRNCLVGANALVTEGKEFPDNSLIVGSPARAVRTLDDEAVASIRRSAEN YIENWKRFSKDLEVIEE" misc_feature 1479077..1479607 /locus_tag="AGROH133_06221" /note="Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663" /db_xref="CDD:31007" misc_feature 1479134..1479574 /locus_tag="AGROH133_06221" /note="Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon...; Region: LbH_gamma_CA_like; cd04645" /db_xref="CDD:100051" misc_feature order(1479134..1479136,1479140..1479142,1479146..1479151, 1479158..1479160,1479194..1479196,1479203..1479208, 1479212..1479214,1479218..1479220,1479260..1479265, 1479275..1479277,1479326..1479337,1479341..1479343, 1479377..1479379) /locus_tag="AGROH133_06221" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100051" misc_feature order(1479275..1479277,1479326..1479328,1479341..1479343) /locus_tag="AGROH133_06221" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:100051" gene complement(1479650..1480054) /gene="zur" /locus_tag="AGROH133_06223" /db_xref="GeneID:10267247" CDS complement(1479650..1480054) /gene="zur" /locus_tag="AGROH133_06223" /note="zinc uptake regulation protein,, Ferric-uptake regulator; Fe2+/Zn2+ uptake regulation proteins" /codon_start=1 /transl_table=11 /product="transcriptional regulator, FUR family" /protein_id="YP_004278783.1" /db_xref="GI:325292919" /db_xref="GeneID:10267247" /translation="MNAQNLTKNQSLVMNALSNAHAPLSAYVILDKLRDDGFRAPLQV YRALEKLVEYGLVHRLESLNAFVACTHTQAECCSHHHGTVAFAICESCGQVNEFHDHE IDHRLERWVKDSRFKAEKTTIEIRGLCAACAG" misc_feature complement(1479668..1480021) /gene="zur" /locus_tag="AGROH133_06223" /note="Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153" /db_xref="CDD:133478" misc_feature complement(order(1479764..1479766,1479797..1479799, 1479815..1479817,1479836..1479838,1479986..1479988)) /gene="zur" /locus_tag="AGROH133_06223" /note="metal binding site 2 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature complement(order(1479893..1479925,1479926..1479934)) /gene="zur" /locus_tag="AGROH133_06223" /note="putative DNA binding helix; other site" /db_xref="CDD:133478" misc_feature complement(order(1479692..1479694,1479743..1479745, 1479812..1479814,1479818..1479820)) /gene="zur" /locus_tag="AGROH133_06223" /note="metal binding site 1 [ion binding]; metal-binding site" /db_xref="CDD:133478" misc_feature complement(order(1479671..1479697,1479701..1479709, 1479734..1479739,1479785..1479793)) /gene="zur" /locus_tag="AGROH133_06223" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133478" misc_feature complement(order(1479668..1479670,1479779..1479781, 1479788..1479790)) /gene="zur" /locus_tag="AGROH133_06223" /note="structural Zn2+ binding site [ion binding]; other site" /db_xref="CDD:133478" gene complement(1480051..1480869) /gene="znuB" /locus_tag="AGROH133_06224" /db_xref="GeneID:10267248" CDS complement(1480051..1480869) /gene="znuB" /locus_tag="AGROH133_06224" /note="ABC transporter transmembrane protein (zinc); ABC-type Mn2+/Zn2+ transport systems, permease components" /codon_start=1 /transl_table=11 /product="High-affinity zinc uptake system membrane protein znuB" /protein_id="YP_004278784.1" /db_xref="GI:325292920" /db_xref="GeneID:10267248" /translation="MFDDFFVRAMIAGIGVALTAGPLGCFVVWRRMAYFGDTMAHSAL LGVALSLLLQINLIVSVFLVASAVSILLIFLQRRQALSADALLGILSHSALAIGLVIV AFMSWVRIDLVSFLFGDILAVTRSDIALIWGGGLVVLVSMVFLWRSLLASTVNTELAE AEGLNPERAKLIFTLLMALVIAIAMKVVGIMLITSLLIIPAATARRFSSTPEVMAVVA SLIGAVAVVGGLFGSLSYDTPSGPSIVVAAVILFVISLLPAPGFSRSADEGGKS" misc_feature complement(1480102..1480854) /gene="znuB" /locus_tag="AGROH133_06224" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature complement(order(1480237..1480239,1480258..1480260, 1480384..1480392,1480396..1480413,1480417..1480422, 1480426..1480434,1480438..1480443,1480780..1480788, 1480798..1480800)) /gene="znuB" /locus_tag="AGROH133_06224" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature complement(order(1480102..1480104,1480111..1480116, 1480123..1480125,1480132..1480137,1480144..1480146, 1480291..1480293,1480519..1480521,1480528..1480533, 1480564..1480566,1480570..1480572,1480579..1480581, 1480588..1480593,1480600..1480605,1480612..1480617, 1480621..1480623,1480762..1480764,1480777..1480779, 1480783..1480785)) /gene="znuB" /locus_tag="AGROH133_06224" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(1480153..1480155,1480303..1480305, 1480315..1480317,1480489..1480491,1480564..1480566)) /gene="znuB" /locus_tag="AGROH133_06224" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene complement(1480862..1481779) /gene="znuC" /locus_tag="AGROH133_06232" /db_xref="GeneID:10267249" CDS complement(1480862..1481779) /gene="znuC" /locus_tag="AGROH133_06232" /EC_number="3.6.3.-" /note="ABC transporter nucleotide-binding protein/ATPase (zinc); ABC-type Mn/Zn transport systems, ATPase component" /codon_start=1 /transl_table=11 /product="Zinc import ATP-binding protein znuC" /protein_id="YP_004278785.1" /db_xref="GI:325292921" /db_xref="GeneID:10267249" /translation="MLHSAHEGKEILVSLSNAGVQRNGRWLVRGVEFSVSKGEIVTLI GPNGSGKSTSAKMAIGVLKPSEGAVSRIAGLRVGYVPQKLSVDWTMPLSVRRLMTLTG PLPAREIDAALNATGIAHLADAEVQHLSGGEFQRALLARAIARKPDLLVLDEPVQGVD FSGEIALYDLIKNIRNSNNCGILLISHDLHVVMAETDTVICLNGHVCCRGTPQAVSQS PEYMRLFGGSAAKALAVYSHHHDHTHLPDGRVQHADGSVTEHCHPDDGHHHAHEQHHD HNHDHGDCGCGHEHDGHATSSHQQGERHV" misc_feature complement(1481030..1481746) /gene="znuC" /locus_tag="AGROH133_06232" /note="high-affinity zinc transporter ATPase; Reviewed; Region: znuC; PRK09544" /db_xref="CDD:181939" misc_feature complement(1481150..1481740) /gene="znuC" /locus_tag="AGROH133_06232" /note="ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-...; Region: ABC_Metallic_Cations; cd03235" /db_xref="CDD:72994" gene 1481884..1482870 /gene="znuA" /locus_tag="AGROH133_06233" /db_xref="GeneID:10267250" CDS 1481884..1482870 /gene="znuA" /locus_tag="AGROH133_06233" /note="ABC transporter substrate-binding protein (zinc); ABC-type Zn2+ transport system, periplasmic component/surface adhesin" /codon_start=1 /transl_table=11 /product="High-affinity zinc uptake system protein znuA" /protein_id="YP_004278786.1" /db_xref="GI:325292922" /db_xref="GeneID:10267250" /translation="MRSFVIPLMASVAIAAAASGATAAPNVVVSIKPVHSLVAAIMRG VGEPQLIVDGAASPHTYNLRPSNARTLEKADLVFWVGPGLEAFLQKPLEALTSKATVV ELEDAKGLEKLPFREGGPFEAHDDGEEAHGEHAGHADSEDAHAHDHAHDDGDHEHGAY DTHLWLDPANAKAMAQTIETALIAADAGNAETYQANTKKLIDDLDALDSEIAETVKPV KDKPFIVFHDAYQYFEHRYGVKTAGSITVSPETLPGADRVREMQEKVRQLGATCVFAE PQFEPKLISVITEGTAAKSATLDPEAATLEPGPDLYFKMMRGIAGSLKDCLS" misc_feature 1481956..1482864 /gene="znuA" /locus_tag="AGROH133_06233" /note="Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism; Region: ZnuA; cd01019" /db_xref="CDD:29738" misc_feature 1481962..1482864 /gene="znuA" /locus_tag="AGROH133_06233" /note="Periplasmic solute binding protein family; Region: SBP_bac_9; pfam01297" /db_xref="CDD:189932" misc_feature order(1482058..1482060,1482370..1482372,1482562..1482564, 1482778..1482780) /gene="znuA" /locus_tag="AGROH133_06233" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29738" gene complement(1482892..1483944) /locus_tag="AGROH133_06235" /db_xref="GeneID:10267251" CDS complement(1482892..1483944) /locus_tag="AGROH133_06235" /note="Periplasmic binding protein/LacI transcriptional regulator; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="LacI family transcriptional regulator" /protein_id="YP_004278787.1" /db_xref="GI:325292923" /db_xref="GeneID:10267251" /translation="MNDTGNSGRDEAKATTGERPTLKTIAYMTGLGITTVSRALKDAP DIGAETKERVRLIAQQIGYQPNRAGVRLRTGKTNVIALVLSVDEELMGFTSQMVFGIT EVLATTQYHLVVTPHTHAKDSMVPIRYILETGSADGVIISKIEPNDPRVRFMTERKMP FVTHGRSDMGIEHAYHDFDNEAYAYEAVERLAQCGRKRIAIIVPPSRFAFHDHARKGF TRGIRDFGVSEFPLDAITIETPLDKIRDFGKRLMQSDDRPDGIVSISGSSTIALVAGF EAAGVRIGKDIDIVSKQSAEFLNWIQPQIHTVNEDIKLAGRELAKALLARINGAPPET LQSVSRPVWSSMAPKP" misc_feature complement(1482922..1483887) /locus_tag="AGROH133_06235" /note="Transcriptional regulators [Transcription]; Region: PurR; COG1609" /db_xref="CDD:31797" misc_feature complement(1483723..1483878) /locus_tag="AGROH133_06235" /note="Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392" /db_xref="CDD:143331" misc_feature complement(order(1483726..1483731,1483735..1483740, 1483747..1483749,1483756..1483758,1483795..1483797, 1483804..1483809,1483822..1483824,1483831..1483836, 1483840..1483854,1483876..1483878)) /locus_tag="AGROH133_06235" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature complement(1483729..1483758) /locus_tag="AGROH133_06235" /note="domain linker motif; other site" /db_xref="CDD:143331" misc_feature complement(1482916..1483710) /locus_tag="AGROH133_06235" /note="Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_AglR_RafR_like; cd06271" /db_xref="CDD:107266" misc_feature complement(order(1483066..1483068,1483150..1483152, 1483303..1483305,1483411..1483422,1483453..1483458, 1483654..1483656,1483666..1483668)) /locus_tag="AGROH133_06235" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107266" gene 1484375..1486909 /gene="manA" /locus_tag="AGROH133_06237" /db_xref="GeneID:10267252" CDS 1484375..1486909 /gene="manA" /locus_tag="AGROH133_06237" /EC_number="3.2.1.25" /note="glycoside hydrolase, catalytic core; Beta-galactosidase/beta-glucuronidase" /codon_start=1 /transl_table=11 /product="beta-mannosidase precursor" /protein_id="YP_004278788.1" /db_xref="GI:325292924" /db_xref="GeneID:10267252" /translation="MHLPQIPTQACVIMASLSYLNSSMQGPIMISSSTPETVIDLAGL WRLTSLEGDHTTDLTVPGDVHSALKNAGIIPDPYHGANENAVQWVAHRDWIIERTFIL DDADASWYLDIDYLDTVAIVFVNDVPVLSSDNCFRRYRPDVSRAVRPGENTIRIHFHS NIAAGAERQARQPFYIPYHEGNSPIANGNMLRKPQCHFGWDWNIAIAPLGLYGKILLK RLDTARVEHVVTSQHHVEGGVELHVAITLFAEGPASLPLYLSLNDERLRLDCGVGAGE TVVRHVFFVEDPALWWPAGSGEQTLYTLAVELPDETVTRRIGFRTIELLTDKDEAGSR FAFRINGREIFCRGANWIPSDALYSLTSREKTEDLLCSAVEANMNMIRVWGGGFYEED WFYDLCDRLGLLVWQDFMFACNLYPCSEDFLDNVEHEVDYQVKRLSSHPSIALWCGDN ELVGALTWFEEPRNNRDRYLVAYDRLNRTIEKALKKAAPEALWWPSSPASGYLDYGDA WHADGSGDMHYWSVWHENKSFDNYRSVKPRFCSEFGFQSYTSMPVIRTYAEEKDMNIA SPVIELHQKNVGGNERIAGTMFRYFRFPKDFENFVYLSQVQQALAIRTAVDYWRSLKP HCMGTLYWQLNDTWPVASWSSLDYGGGWKALHYAARRFFQPVSVSAIPSEDGRRLSFS MVNDTAEDVEIDMNIVALTMEGNRVPLKSANGTCGTDKAATLTEIDMDSLPDGSILAW NFIASNGMTGEGHHVRDTYKSLELQPAGLTFSTATLKNGQLEIDVTAAGLALFVMLEA DQPGRYSDNLFDLAAGETRRIIFTPKAGSGQPQFRIFDLYTCQSSH" misc_feature 1484462..1486903 /gene="manA" /locus_tag="AGROH133_06237" /note="Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]; Region: LacZ; COG3250" /db_xref="CDD:33061" misc_feature 1485041..1485334 /gene="manA" /locus_tag="AGROH133_06237" /note="domain; Region: Glyco_hydro_2; pfam00703" /db_xref="CDD:189679" misc_feature 1485383..>1485727 /gene="manA" /locus_tag="AGROH133_06237" /note="Glycosyl hydrolases family 2, TIM barrel domain; Region: Glyco_hydro_2_C; cl14895" /db_xref="CDD:196856" gene 1487033..1488064 /locus_tag="AGROH133_06238" /db_xref="GeneID:10267253" CDS 1487033..1488064 /locus_tag="AGROH133_06238" /note="Aldo/keto reductase family; Predicted oxidoreductases (related to aryl- alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="oxidoreductase protein" /protein_id="YP_004278789.1" /db_xref="GI:325292925" /db_xref="GeneID:10267253" /translation="MVWQPAENRYTSMKYNHCGKTGLKLPAISLGLWHNFGNDTPHQT KQAICRRAFDLGITHFDLANNYGPPPGSAETAFGEILKTDFRGYRDEMIISSKAGYNM WPGPYGEWGSRKYLISSCDQSLKRMGLDYVDIFYSHRFDPNTPLEETCGALDQIVRSG KALYVGISSYNSKRTREAAAILKDLGTPCIIHQPSYSMINRWIEEDGLVDTLEDLGIG SIVFSPLAQGMLTTKYLGGVPDGSRASQSKSLNPAFLNERNVENIRALNRIAERRGQT LAQMAIAWVLRGGRITSALIGASRVEQVEDCVKALDNADFSTEELAEIDGYAKDADIN LWAKSAERV" misc_feature 1487069..1488034 /locus_tag="AGROH133_06238" /note="Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]; Region: Tas; COG0667" /db_xref="CDD:31011" misc_feature 1487087..1488007 /locus_tag="AGROH133_06238" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature order(1487123..1487131,1487213..1487215,1487228..1487230, 1487321..1487323,1487444..1487449,1487534..1487539, 1487609..1487611,1487696..1487713,1487864..1487866, 1487915..1487926,1487939..1487941,1487948..1487953) /locus_tag="AGROH133_06238" /note="active site" /db_xref="CDD:119408" misc_feature order(1487213..1487215,1487228..1487230,1487321..1487323, 1487444..1487446) /locus_tag="AGROH133_06238" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene 1488257..1488583 /locus_tag="AGROH133_06239" /db_xref="GeneID:10267254" CDS 1488257..1488583 /locus_tag="AGROH133_06239" /note="Predicted integral membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278790.1" /db_xref="GI:325292926" /db_xref="GeneID:10267254" /translation="MKKFVTILLAATVLAAPMAQAQSRHDDRHRGLTVERHTTTKKVI VKKHRWDRGQRLSPAERRHFVDRRDYRRYRLAEPRRDQRWVRVDNQFLLINAVTGLIV GLSAAR" misc_feature 1488257..1488580 /locus_tag="AGROH133_06239" /note="Domain of unknown function (DUF3315); Region: DUF3315; cl02275" /db_xref="CDD:154832" gene complement(1488652..1490082) /gene="gnd" /locus_tag="AGROH133_06241" /db_xref="GeneID:10267255" CDS complement(1488652..1490082) /gene="gnd" /locus_tag="AGROH133_06241" /EC_number="1.1.1.44" /note="catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate" /codon_start=1 /transl_table=11 /product="6-phosphogluconate dehydrogenase" /protein_id="YP_004278791.1" /db_xref="GI:325292927" /db_xref="GeneID:10267255" /translation="MEQAEIGLIGLGVMGSNLALNIAEKGNKIAVFNRTPEATKKFYA EAGDLQGQLIPCETIEEFVAAIRPPRPIIIMIKAGDPVDQQMEILKPHLSNGDIMIDA GNANFRDTIRRFDNLKDSGLTFIGMGVSGGEEGARHGPSIMVGGTEDSWKRVEKVLTS ISAKYNDDPCVAWLGNDGAGHFVKTIHNGIEYADMQMIAEIYGILRDGLKMSASEIAD VFGEWNKGRLNSYLIEITEKVLRAADPITGKPMVDLILDKAGQKGTGKWSVIEAQNMG VAATAIEAAVAARILSSQKDEREAAEKIFGLPTVAAAPADKKAFIADLESALLAAKVG AYAQGFAVMSAASKEFNWNLPMPTIARIWRAGCIIRSEFLDEITSAFTKDPHVANLIV TPAFSGIVKDTDAALRRVVSYAVLSGLPVSALASALGYFDAYRRARGSANLIQAQRDF FGAHGFERTDGVDKPHGPWGSGADIF" misc_feature complement(1489195..1490070) /gene="gnd" /locus_tag="AGROH133_06241" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1488664..1490043) /gene="gnd" /locus_tag="AGROH133_06241" /note="6-phosphogluconate dehydrogenase; Validated; Region: PRK09287" /db_xref="CDD:181758" misc_feature complement(1488676..1489545) /gene="gnd" /locus_tag="AGROH133_06241" /note="6-phosphogluconate dehydrogenase, C-terminal domain; Region: 6PGD; pfam00393" /db_xref="CDD:109451" gene complement(1490241..1490399) /gene="fixS" /locus_tag="AGROH133_06242" /db_xref="GeneID:10267256" CDS complement(1490241..1490399) /gene="fixS" /locus_tag="AGROH133_06242" /note="Cytochrome oxidase maturation protein cbb3-type; Uncharacterized protein, possibly involved in nitrogen fixation" /codon_start=1 /transl_table=11 /product="Nitrogen fixation protein fixS" /protein_id="YP_004278792.1" /db_xref="GI:325292928" /db_xref="GeneID:10267256" /translation="MNMLIYLIPVALFLGALGLFAFLWSVRSGQYEDMDGAAWRALDD GDDRPRPS" misc_feature complement(1490250..1490399) /gene="fixS" /locus_tag="AGROH133_06242" /note="Cytochrome oxidase maturation protein cbb3-type; Region: CcoS; cl01253" /db_xref="CDD:194083" gene complement(1490396..1492687) /gene="fixI" /locus_tag="AGROH133_06244" /db_xref="GeneID:10267257" CDS complement(1490396..1492687) /gene="fixI" /locus_tag="AGROH133_06244" /EC_number="3.6.1.-" /note="ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, E1-E2 type cation ATPase FixI; Cation transport ATPase" /codon_start=1 /transl_table=11 /product="nitrogen fixation protein FixI" /protein_id="YP_004278793.1" /db_xref="GI:325292929" /db_xref="GeneID:10267257" /translation="MSCCAPGTEGSLQLGEPVNPPSSEELMLASRDLGQGLRQTDLSV PGVYCGACITTIETALRRLRQVEQARVNLSSKRVAIVWKEDVDGIRTDPAELARAILA TGYRTHLFASGQDASDVLRSQLIRAVALCGFASANIMLLSVSVWSGADAATRDMFHWI SAMIAAPALIYGGRFFYQSAWNALKHGRTNMDVPIALAITLSYAISLWETIHHGEHAW FDATVSLLFFLLIGRTLDHIMRDRARSAIAGLARLSPRGATVVGEDGTREYRPLGDVL PGMTIAIAAGDRVAVDAMVISGSSDLDVSIVNGESAPRRVEAGDLLQAGTLNLTGSLA ARVTASAKDSFLSEVIGLMEAAEGGRARYRRIADRAASYYSPVVHLLALMTFLGWGVL GGDWKQAMLIAIAVLIITCPCALGLAVPVVQVVAAGRLFRHGIMVKEGSAMERLAEID TVLFDKTGTLTVGKPRLVETGDVNPATMAIAAGLAAHSRHPLSKALHAAYGGILPVYE AVREIPGSGVEALTPAGTYRLGNRRFACPDESQMENGDARSEVVLSLDGGYLASFGFE DNPRPGAVQALRSLSVQGLVLEIVSGDRVPAVKAMAQRLGIAKWNADLSPKDKAGRCG ALAGEGRKVLMVGDGINDAPALAAAHVSMAPATAADIGRQAADFVFMHENLDAVPVAI ETSRRAGRLIRQNFALAIGYNVIAVPIAIAGYATPMIAAIAMSTSSLIVVANALRLAG TPEAVSAQQSVPAGFADEGAQPA" misc_feature complement(1490474..1492579) /gene="fixI" /locus_tag="AGROH133_06244" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:32399" misc_feature complement(1492364..1492567) /gene="fixI" /locus_tag="AGROH133_06244" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:29471" misc_feature complement(order(1492532..1492534,1492541..1492549)) /gene="fixI" /locus_tag="AGROH133_06244" /note="metal-binding site [ion binding]" /db_xref="CDD:29471" misc_feature complement(1491353..1492015) /gene="fixI" /locus_tag="AGROH133_06244" /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122" /db_xref="CDD:189402" misc_feature complement(1490750..1490998) /gene="fixI" /locus_tag="AGROH133_06244" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" gene complement(1492684..1493184) /gene="fixH" /locus_tag="AGROH133_06252" /db_xref="GeneID:10267258" CDS complement(1492684..1493184) /gene="fixH" /locus_tag="AGROH133_06252" /note="FixH; Predicted integral membrane protein linked to a cation pump" /codon_start=1 /transl_table=11 /product="Nitrogen fixation protein fixH" /protein_id="YP_004278794.1" /db_xref="GI:325292930" /db_xref="GeneID:10267258" /translation="MTTTNRQTSGFIFTGWHMLGVMVMFFGIVITVNMVMAWNAVTSW SGLVVPNTYVASQQFNAKAEAAKARAATGIKGRLVVDEKTVRYEVFHPDTGPVDTDSV TARFRRPVGEHQNFDMELTPVSTGAFTGPHDMLPGQWIVEVTAVKDGRIIVHEGTRIA VIRGRQ" misc_feature complement(1492690..1493184) /gene="fixH" /locus_tag="AGROH133_06252" /note="FixH; Region: FixH; cl01254" /db_xref="CDD:154296" gene complement(1493181..1494764) /gene="fixG" /locus_tag="AGROH133_06254" /db_xref="GeneID:10267259" CDS complement(1493181..1494764) /gene="fixG" /locus_tag="AGROH133_06254" /note="Cytochrome c oxidase cbb3 type, accessory protein FixG; Polyferredoxin" /codon_start=1 /transl_table=11 /product="Nitrogen fixation protein fixG" /protein_id="YP_004278795.1" /db_xref="GI:325292931" /db_xref="GeneID:10267259" /translation="MNIYPVGQDRPQQPVERLEAEAVNSAKTRKPLYEARKKIFPKRA EGRFRRFKWLVMLVTLGIYYLTPFLRWDRGPYAPDQAVLIDIANRRFYFFFIEIWPQE FFFVAGLLVMAGLGLFLITSAVGRAWCGYTCPQTVWVDLFLVVERAIEGDRNARMKLD AAPFTFGKLRKRVMKHAIWLVIGVLTGGAWIFYFADAPTLAREFMTGQAPMIAYTTVA ILTATTYVFGGLMREQVCTYMCPWPRIQAAMLDENSLVVTYNDWRGEPRTRHAKKAAA TGESVGDCVDCNACVAVCPMGIDIRDGQQLECITCALCIDACDGVMDKIGKPRGLIAY ATLSEYQSNMALATGNGQHAIRPANVRNEDGGFKNSIRHFDWRIVFRPRTLLYTAIWA AVGIGLLLALVTRERLALNVLHDRNPQYVLESNGSIRNGYTVRILNMVPQPRLMSLTI EGIPSAVMKINGVPDAASRSFEVMVEPDEATTLKVFVTLPGSHVARAAENFEFIVSDT GGHETARYDAVFNAPGVKK" misc_feature complement(1493199..1494623) /gene="fixG" /locus_tag="AGROH133_06254" /note="cytochrome c oxidase accessory protein FixG; Region: ccoG_rdxA_fixG; TIGR02745" /db_xref="CDD:162996" misc_feature complement(1493196..1493555) /gene="fixG" /locus_tag="AGROH133_06254" /note="Ubp3 associated protein Bre5; Region: Bre5; pfam11614" /db_xref="CDD:152050" gene 1494884..1495288 /locus_tag="AGROH133_06261" /db_xref="GeneID:10267260" CDS 1494884..1495288 /locus_tag="AGROH133_06261" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278796.1" /db_xref="GI:325292932" /db_xref="GeneID:10267260" /translation="MPVMQSKIIHLSVEKPWSHVFDFASDPQNMPHWAAGLAGGLKPD GEDWIADGGPLGEVRVNFAPLNDFGVIDHVVTLPDGMKVYNALRVTPNGSGAEVSFTL LRLPDMTDEDFERDAEMVRVDLEKLKSLLETD" misc_feature 1494896..1495279 /locus_tag="AGROH133_06261" /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cl14643" /db_xref="CDD:196807" gene 1495300..1495656 /locus_tag="AGROH133_06262" /db_xref="GeneID:10267261" CDS 1495300..1495656 /locus_tag="AGROH133_06262" /note="Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Predicted enzyme related to lactoylglutathione lyase" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004278797.1" /db_xref="GI:325292933" /db_xref="GeneID:10267261" /translation="MTTNTNDRRIDYVEFNVADIERSKEFYGGAFGWSFKDYGPQYCE FSDGRLTGGFTTTAPVSAKGGPLVILYAADIENAHRRVEAAGGQISVAIFAFPGGRRF HFTDPDGYELAVWSDR" misc_feature 1495327..1495647 /locus_tag="AGROH133_06262" /note="N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains; Region: SgaA_N_like; cd07247" /db_xref="CDD:176671" gene complement(1495705..1496568) /gene="fixP" /locus_tag="AGROH133_06263" /db_xref="GeneID:10267262" CDS complement(1495705..1496568) /gene="fixP" /locus_tag="AGROH133_06263" /EC_number="1.9.3.1" /note="Cytochrome c oxidase cbb3-type, subunit III; Cytochrome c, mono- and diheme variants" /codon_start=1 /transl_table=11 /product="cytochrome-c oxidase fixP chain" /protein_id="YP_004278798.1" /db_xref="GI:325292934" /db_xref="GeneID:10267262" /translation="MSEKHIDDISGVETTGHEWDGIRELNNPMPRWWVWTFYFTILWA IGYTIAYPAWPLINGATQGLLGWSSRSEIAADMADAKQAQSVYSDRIASSSLAEIEAD PTLRQFALSGGAAAFKVNCIQCHGSGAEGGQGYPNLNDDDWMWGGSVEDIYTTVKHGI RFADDPDTRLSEMPAFGDILKSEEIREVAAYVVSLTGTPSNPALVEPGKQIFADNCAS CHGENAKGNREFGAPNLADAIWLKASGEQGIVAQIRSPKHGVMPAWGERLGDTTVKQL AIFVHSLGGGE" misc_feature complement(1495708..1496538) /gene="fixP" /locus_tag="AGROH133_06263" /note="cytochrome c oxidase, cbb3-type, subunit III; Region: ccoP; TIGR00782" /db_xref="CDD:129864" misc_feature complement(1495984..1496232) /gene="fixP" /locus_tag="AGROH133_06263" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" misc_feature complement(1495720..1495953) /gene="fixP" /locus_tag="AGROH133_06263" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene complement(1496572..1496724) /gene="fixQ" /locus_tag="AGROH133_06265" /db_xref="GeneID:10267263" CDS complement(1496572..1496724) /gene="fixQ" /locus_tag="AGROH133_06265" /EC_number="1.9.3.1" /note="Cbb3-type cytochrome oxidase component FixQ; Cbb3-type cytochrome oxidase, subunit 3" /codon_start=1 /transl_table=11 /product="cytochrome-c oxidase fixQ chain" /protein_id="YP_004278799.1" /db_xref="GI:325292935" /db_xref="GeneID:10267263" /translation="METYTAMRHFADSWGLLAMTLFFAGVVVFTLRPGSKKAADDAAS IPLKED" misc_feature complement(1496581..1496724) /gene="fixQ" /locus_tag="AGROH133_06265" /note="Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of...; Region: cbb3_Oxidase_CcoQ; cd01324" /db_xref="CDD:30065" gene complement(1496737..1497513) /gene="fixO" /locus_tag="AGROH133_06267" /db_xref="GeneID:10267264" CDS complement(1496737..1497513) /gene="fixO" /locus_tag="AGROH133_06267" /EC_number="1.9.3.1" /note="Cytochrome C oxidase, mono-heme subunit/FixO; Cbb3-type cytochrome oxidase, cytochrome c subunit" /codon_start=1 /transl_table=11 /product="cytochrome-c oxidase fixO chain" /protein_id="YP_004278800.1" /db_xref="GI:325292936" /db_xref="GeneID:10267264" /translation="MTPHLRCSPLNKEGPMSILDKHGVIERNATLLLVGSLLVVSIGG IVEIAPLFYLENTIEKVEGMRPYSPLELAGRNIYIREGCYVCHSQMIRPFRDEVERYG HYSLAAESMYDHPFQWGSKRTGPDLARVGDRYSNEWHVQHLADPRSVVPESIMPSYAF LKTTPLKITDISMELKANRAVGVPYSDEMIEKSAADLHAQADPNADTTELLARYPKAK VGDFDGDPAKLTEMDALVAYLQMLGTLVDFSTYDDAAGYR" misc_feature complement(1496773..1497450) /gene="fixO" /locus_tag="AGROH133_06267" /note="Cytochrome C oxidase, mono-heme subunit/FixO; Region: FixO; cl01130" /db_xref="CDD:186349" gene complement(1497479..1499101) /gene="fixN" /locus_tag="AGROH133_06269" /db_xref="GeneID:10267265" CDS complement(1497479..1499101) /gene="fixN" /locus_tag="AGROH133_06269" /EC_number="1.9.3.1" /note="Cytochrome C and Quinol oxidase polypeptide I; Cbb3-type cytochrome oxidase, subunit 1" /codon_start=1 /transl_table=11 /product="cytochrome-c oxidase fixN chain" /protein_id="YP_004278801.1" /db_xref="GI:325292937" /db_xref="GeneID:10267265" /translation="MNYTLETAIVALGAFLALLGAAFAHDNLFATHMWVLFFTLLVST VLLLRRVSFAPVDQAARARLKSEYFDEVVKYGVVATVFWGVVGFLVGVVVALQLAFPD LNIAPYFNFGRMRPLHTSAVIFAFGGNALIATSFYVVQRTCRSRLFGGNLGWFVFWGY NLFIVMAATGYLLGITQGREYAEPEWYVDIWLTIVWVAYLLAFLGTILTRKEPHIYVA NWFYLSFIVTIAMLHIVNNLAIPVSFLGVKSYSAFSGVQDALTQWWYGHNAVGFFLTA GFLGMMYYFIPKQVNRPVYSYRLSIIHFWALIFMYIWAGPHHLHYTALPDWAQTLGMV FSIMLWMPSWGGMINGLMTLSGAWDKIRTDPIVRMMVMAVAFYGMATFEGPMMSIKAV NSLSHYTDWTIGHVHSGALGWNGMITFGAIYYLTPKLWGRDRLYSLQLVNWHFWLATI GIVIYAAVMWVAGIQQALMWREYDTQGFLVYSFAESVAALFPYYVMRALGGLMFLSGA LIMAYNVTMTILGRQREEGVRNDAAPSLQPAE" misc_feature complement(1497545..1499029) /gene="fixN" /locus_tag="AGROH133_06269" /note="Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the...; Region: cbb3_Oxidase_I; cd01661" /db_xref="CDD:29932" misc_feature complement(order(1497626..1497628,1497737..1497739, 1497869..1497871,1497881..1497883,1498877..1498879)) /gene="fixN" /locus_tag="AGROH133_06269" /note="Low-spin heme binding site [chemical binding]; other site" /db_xref="CDD:29932" misc_feature complement(order(1497692..1497694,1497908..1497913, 1497923..1497925,1498322..1498327,1498340..1498342)) /gene="fixN" /locus_tag="AGROH133_06269" /note="Putative water exit pathway; other site" /db_xref="CDD:29932" misc_feature complement(order(1497887..1497889,1498148..1498153, 1498301..1498303)) /gene="fixN" /locus_tag="AGROH133_06269" /note="Binuclear center (active site) [active]" /db_xref="CDD:29932" misc_feature complement(order(1497689..1497694,1497908..1497913, 1498148..1498150)) /gene="fixN" /locus_tag="AGROH133_06269" /note="Putative proton exit pathway; other site" /db_xref="CDD:29932" gene complement(1499227..1499325) /locus_tag="AGROH133_06285" /db_xref="GeneID:10267266" CDS complement(1499227..1499325) /locus_tag="AGROH133_06285" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278802.1" /db_xref="GI:325292938" /db_xref="GeneID:10267266" /translation="MSRVGVRSFSFYVLFIAKSRLGFAGAATASLS" gene complement(1499345..1499866) /gene="cobU" /locus_tag="AGROH133_06286" /db_xref="GeneID:10267267" CDS complement(1499345..1499866) /gene="cobU" /locus_tag="AGROH133_06286" /EC_number="2.7.1.156" /EC_number="2.7.7.62" /note="catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase" /codon_start=1 /transl_table=11 /product="cobinamide kinase/cobinamide phosphate guanylyltransferase" /protein_id="YP_004278803.1" /db_xref="GI:325292939" /db_xref="GeneID:10267267" /translation="MTDKNRSVFILGGARSGKSRFAEDLAGKANGRLHYLATGRAWDD EMRDRIDHHQARRGEEWTTHEAPVDIAAVLVRLDAPDNVILIDCLTLWLTNLMMENAD IETAFATLAAAIASTKAKLILVSNEVGLGIVPENRMAREFRDHAGRLHQRVAAIVDEV YFVAAGLPLKMKG" misc_feature complement(1499357..1499845) /gene="cobU" /locus_tag="AGROH133_06286" /note="Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is...; Region: CobU; cd00544" /db_xref="CDD:29982" misc_feature complement(order(1499366..1499368,1499372..1499374, 1499405..1499407,1499414..1499419,1499423..1499428, 1499438..1499440,1499471..1499473,1499477..1499488, 1499816..1499818,1499822..1499830)) /gene="cobU" /locus_tag="AGROH133_06286" /note="homotrimer interface [polypeptide binding]; other site" /db_xref="CDD:29982" misc_feature complement(1499810..1499830) /gene="cobU" /locus_tag="AGROH133_06286" /note="Walker A motif; other site" /db_xref="CDD:29982" misc_feature complement(order(1499603..1499608,1499672..1499674, 1499696..1499698,1499705..1499707,1499750..1499752, 1499810..1499824)) /gene="cobU" /locus_tag="AGROH133_06286" /note="GTP binding site [chemical binding]; other site" /db_xref="CDD:29982" misc_feature complement(1499606..1499620) /gene="cobU" /locus_tag="AGROH133_06286" /note="Walker B motif; other site" /db_xref="CDD:29982" gene 1500373..1501065 /locus_tag="AGROH133_06287" /db_xref="GeneID:10267268" CDS 1500373..1501065 /locus_tag="AGROH133_06287" /note="Protein of unknown function DUF599; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278804.1" /db_xref="GI:325292940" /db_xref="GeneID:10267268" /translation="MTVMDYISIVVFIVLWATYTHLTTGTTLFSRTSLNQAMAERRRD WIYNSLKRDLKMIDTQIMAGLQNGTAFFASTSIFAIGGCFALLGATDRVETVFRDLPF VQYAGRTAFELKVMGLTCLFGYSFFKFGWSYRLFNYCTILFGAIPMVHDVNADRDAAE RAAENVIKMNIIAAKNFNDGLRTIFLSIGYLGWFISPYVFIASTVIIIVALLRRQFFS EARRAIMDRPGP" misc_feature 1500373..1501062 /locus_tag="AGROH133_06287" /note="Protein of unknown function, DUF599; Region: DUF599; cl01575" /db_xref="CDD:154481" gene 1501135..1502100 /locus_tag="AGROH133_06292" /db_xref="GeneID:10267269" CDS 1501135..1502100 /locus_tag="AGROH133_06292" /note="Protein of unknown function DUF1624; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278805.1" /db_xref="GI:325292941" /db_xref="GeneID:10267269" /translation="METETAAIDTRRKGRMGGLDTLRGLALIAMASYHFTWNLEYFGY LEPGTATTGLWKLYARAIASSFLFLAGFSLFLAHGKAINWPSFGKRFAMVAGSALLIT IATYVAFPDSFIFFGILHNIAAASLVGLLFLRAPPLVTLLFAALAFALPQYVQSDFFN SKWLAWVGFSTMPPRSNDYVPLLPWLAPFLAGLAVSQFVTPRNWLDRFRNPSSPRNLI ATAGRHSLAFYLIHQPALIGLVYAVSLVAPPPPVDQVELYKSSCEKSCVQQANGQELC QRFCGCTLEKLQAESLFDIMMEGKLSAEQQTKVSDVAQQCTVEAQ" misc_feature 1501135..1502097 /locus_tag="AGROH133_06292" /note="Protein of unknown function (DUF1624); Region: DUF1624; cl01394" /db_xref="CDD:154378" gene complement(1502259..1502672) /locus_tag="AGROH133_06300" /db_xref="GeneID:10267270" CDS complement(1502259..1502672) /locus_tag="AGROH133_06300" /note="DNA binding; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="ranscriptional regulator, MerR family" /protein_id="YP_004278806.1" /db_xref="GI:325292942" /db_xref="GeneID:10267270" /translation="MSGYESDRPLDKYYSITELTREFGVSTRTLRFYEDEGLIHPERR GRTRLFRSADRRLIQEILRGRRIGFTIAEIREIIHVYKEPPGESGQLVLLMKKVDEKR ADLRQKRKDIEETLAELDNVEEACLTRLAEIGVGT" misc_feature complement(1502274..1502633) /locus_tag="AGROH133_06300" /note="Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789" /db_xref="CDD:31132" misc_feature complement(1502280..1502633) /locus_tag="AGROH133_06300" /note="Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR; Region: HTH_GnyR; cd04776" /db_xref="CDD:133403" misc_feature complement(order(1502526..1502534,1502580..1502582, 1502622..1502630)) /locus_tag="AGROH133_06300" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133403" misc_feature complement(order(1502325..1502330,1502337..1502339, 1502349..1502351,1502367..1502369,1502379..1502381, 1502442..1502444,1502469..1502474,1502484..1502486, 1502493..1502495)) /locus_tag="AGROH133_06300" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:133403" gene complement(1502731..1504158) /gene="mgtE" /locus_tag="AGROH133_06302" /db_xref="GeneID:10267271" CDS complement(1502731..1504158) /gene="mgtE" /locus_tag="AGROH133_06302" /note="Divalent cation transporter; Mg/Co/Ni transporter MgtE (contains CBS domain)" /codon_start=1 /transl_table=11 /product="magnesium transporter" /protein_id="YP_004278807.1" /db_xref="GI:325292943" /db_xref="GeneID:10267271" /translation="MTDRDDDLLAPEELKPTEAPSDIYAEDGSVRSDFLAMVGAAIAD RDLLFLRKNVARLHESELGDVLESIMPEQRHALVRLLGSDFDMTALTEVDEGIRLDIV DQMSNEQIAAGIGELDSDDAVYILEDLDDEDREDILSQLPFTERVRLMRALDYPESSA GRRMQTEFVAVPPFWTVGQTIDYLREEEELPDSFTQIFVIDPTFKLVGALDLDKVLRA KRQVKIETIMHETNHSIPAEMDQEEAAQLFEQYDLLSAAVVDNNGRLVGVLTIDDVVD VIQEEAEEDLLRLGGVGDEELSDSITSTSRSRVPWLAVNLLTAFLSASVISLFDATIQ QIIALAILMPTVAGMGGNAGSQTMTVSVRALATKSLDIHNAARIIRREAGVGILNGLL FGCAIGIVAGVWFQDVHIGGIIAAAMCLNMLAAALAGILIPLVLDRFGADPAVSSAVF VTAVTDIVGFFSFLGIATWWYGISG" misc_feature complement(1502737..1504053) /gene="mgtE" /locus_tag="AGROH133_06302" /note="Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]; Region: MgtE; COG2239" /db_xref="CDD:32420" misc_feature complement(1503688..1503990) /gene="mgtE" /locus_tag="AGROH133_06302" /note="MgtE intracellular N domain; Region: MgtE_N; cl15244" /db_xref="CDD:197452" misc_feature complement(1503325..1503651) /gene="mgtE" /locus_tag="AGROH133_06302" /note="This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other...; Region: CBS_pair_Mg_transporter; cd04606" /db_xref="CDD:73106" misc_feature complement(1502758..1503132) /gene="mgtE" /locus_tag="AGROH133_06302" /note="Divalent cation transporter; Region: MgtE; cl00786" /db_xref="CDD:120115" gene 1504528..1506831 /gene="fdhF" /locus_tag="AGROH133_06308" /db_xref="GeneID:10267272" CDS 1504528..1506831 /gene="fdhF" /locus_tag="AGROH133_06308" /EC_number="1.2.1.2" /note="Oxidoreductase alpha (molybdopterin) subunit; Anaerobic dehydrogenases, typically selenocysteine-containing" /codon_start=1 /transl_table=11 /product="formate dehydrogenase H subunit alpha" /protein_id="YP_004278808.1" /db_xref="GI:325292944" /db_xref="GeneID:10267272" /translation="MSKTDFIGKASAAAGGWGALKSVGKRLMESGAPISGARTLLKAN QPDGFDCPGCAWGDPEHGSSFEFCENGVKAVAWEATEARVPTDFFATRTVSELRGWSD YDLEKQGRLTHPMRYDRASDKYLPVSWDDAFAEIGGVLNSLDSPDRAEFYTSGRASNE AAFIYQLMVRLYGTNNFPDCSNMCHEASGVGLKASIGVGKGTVLLEDFEQADAIFVIG QNPGTNHPRMLGDLRRAALRGAKIVVLNPIKEKGLERFADPQDKIEMITGGNTKIATN YYQPRQGGDMAVVRGMSKAIFAADDAARTAGESAIIDYDFIAEHAVEFEAYRDAVEAT SWESILDQSGLTRAEIEEAARIYMNAGSVIATWAMGVTQHRHSVIMVREITNFMLLRG NIGRPGAGLCPVRGHSNVQGDRTVGIDEKAPPALLDALEKELGVAMPRKPGHNTVEAV AAMLDGKAQTFIALGGNFMRATPDSPLIVKAFENQKLTVNIATKLNHSHLVPGEISFV LPCLGRTEIDRNSAGKPQIVTVEDSMSMVHGSGGINPPASEELRSEVAIVAGIAQATL GNAQVDWKALAEDYDLIRDMIERVIPGFDNFNERVRVPRGFRLRNTASEREWNTPAKK AVFYSGPLPEQTEHQQALTGDNLFVLQTFRSHDQYNTTIYGMDDRYRGVYGERQVIFM NPADMEALGAHSRQRVDVIGEYGDGVERIAQNFRLVPYNIPRGSVGGYYPELNVLVPL SSYGEGSFTPTSKSVLVSFRLLAGSAS" misc_feature 1504588..1506798 /gene="fdhF" /locus_tag="AGROH133_06308" /note="oxidoreductase alpha (molybdopterin) subunit; Region: Fdhalpha-like; TIGR01701" /db_xref="CDD:162496" misc_feature 1504669..1506408 /gene="fdhF" /locus_tag="AGROH133_06308" /note="The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins; Region: MopB_ydeP; cd02767" /db_xref="CDD:29463" misc_feature order(1504801..1504803,1505068..1505070,1505074..1505082, 1505176..1505181,1505185..1505187,1505194..1505199, 1505260..1505268,1505380..1505382,1505629..1505640, 1505743..1505748,1505920..1505928,1505998..1506006, 1506013..1506015,1506058..1506063,1506121..1506123) /gene="fdhF" /locus_tag="AGROH133_06308" /note="putative molybdopterin cofactor binding site [chemical binding]; other site" /db_xref="CDD:29463" misc_feature 1506469..1506804 /gene="fdhF" /locus_tag="AGROH133_06308" /note="The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT)...; Region: MopB_CT_ydeP; cd02787" /db_xref="CDD:30319" misc_feature order(1506481..1506495,1506499..1506510,1506718..1506720, 1506730..1506732,1506781..1506786) /gene="fdhF" /locus_tag="AGROH133_06308" /note="putative molybdopterin cofactor binding site; other site" /db_xref="CDD:30319" gene 1506845..1507147 /locus_tag="AGROH133_06309" /db_xref="GeneID:10267273" CDS 1506845..1507147 /locus_tag="AGROH133_06309" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278809.1" /db_xref="GI:325292945" /db_xref="GeneID:10267273" /translation="MGEEQSAAAFMAAVEQIVQGSSQALSATCAAILLAINMDIATDS RSIANRLGLAHALVLREISALSPRFVRVTKRDARTQRSWLEVTAEGQALAALSSQT" gene 1507165..1507659 /gene="def" /locus_tag="AGROH133_06310" /db_xref="GeneID:10267274" CDS 1507165..1507659 /gene="def" /locus_tag="AGROH133_06310" /EC_number="3.5.1.88" /note="cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); N-formylmethionyl-tRNA deformylase" /codon_start=1 /transl_table=11 /product="polypeptide deformylase" /protein_id="YP_004278810.1" /db_xref="GI:325292946" /db_xref="GeneID:10267274" /translation="MAIRPILSYPHAGLSEICAPVTVFDDHLQNLVTDLIDTMRAAPG VGITAAHIGVKQRVFVLELTPGTVLTYINPEIVSHSAQTMRHVEGSVSMPGFTEEVER PSEVEVRFQDVAGVEHRESAKAFHAICIQHEIDQLDGVFWLKRLSKLKRDRLVKKWEK SRKP" misc_feature 1507180..1507590 /gene="def" /locus_tag="AGROH133_06310" /note="Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(...; Region: Pep_deformylase; cd00487" /db_xref="CDD:29602" misc_feature order(1507294..1507302,1507315..1507317,1507429..1507437, 1507558..1507563,1507570..1507572) /gene="def" /locus_tag="AGROH133_06310" /note="active site" /db_xref="CDD:29602" misc_feature order(1507300..1507302,1507315..1507317,1507435..1507437, 1507561..1507563) /gene="def" /locus_tag="AGROH133_06310" /note="catalytic residues [active]" /db_xref="CDD:29602" misc_feature order(1507432..1507434,1507558..1507560,1507570..1507572) /gene="def" /locus_tag="AGROH133_06310" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29602" gene complement(1507663..1508091) /locus_tag="AGROH133_06311" /db_xref="GeneID:10267275" CDS complement(1507663..1508091) /locus_tag="AGROH133_06311" /note="OsmC-like protein; Predicted redox protein, regulator of disulfide bond formation" /codon_start=1 /transl_table=11 /product="stress-induced protein" /protein_id="YP_004278811.1" /db_xref="GI:325292947" /db_xref="GeneID:10267275" /translation="MIDGGKVKLRPVGATAKVGRLGRPLISTVTGGALEIVTGVSEPG FNPIDLLYSSLAACLALSARIAASRMGLLDGFESVLVDVSGEKSAQEPYRIIRFDIRM EIAGSFDEATRAAIAHAAEDICTVSNTLKGDADFALSIAS" misc_feature complement(1507672..1508076) /locus_tag="AGROH133_06311" /note="OsmC-like protein; Region: OsmC; cl00767" /db_xref="CDD:193933" gene 1508213..1508380 /locus_tag="AGROH133_06312" /db_xref="GeneID:10267276" CDS 1508213..1508380 /locus_tag="AGROH133_06312" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278812.1" /db_xref="GI:325292948" /db_xref="GeneID:10267276" /translation="MVTSTLVSILITFLVIVLVLWLIARLPVGGGAKQIAQVIVIIIG IISLLKYLAVF" gene complement(1508458..1508883) /locus_tag="AGROH133_06316" /db_xref="GeneID:10267277" CDS complement(1508458..1508883) /locus_tag="AGROH133_06316" /note="PAS fold-3" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278813.1" /db_xref="GI:325292949" /db_xref="GeneID:10267277" /translation="MLAFVRKKGLEVFVQGDKADSDNALGYYMWSISDNRLIMDTVTA ECHGFSEAVASRGVSIEDILERIDVEMRDQVARAIFESITTGVFFDQRYKVHLPDGSI RWIVAKGRAIFDAENTPFLGLGSVRDITLKKTYQFEPRQ" misc_feature complement(1508506..>1508709) /locus_tag="AGROH133_06316" /note="PAS fold; Region: PAS_3; pfam08447" /db_xref="CDD:117024" gene 1508966..1509061 /locus_tag="AGROH133_06317" /db_xref="GeneID:10267278" CDS 1508966..1509061 /locus_tag="AGROH133_06317" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278814.1" /db_xref="GI:325292950" /db_xref="GeneID:10267278" /translation="MAPDPDAGFESTTISKKSVAKPTACTYMTAR" gene 1509081..1509245 /locus_tag="AGROH133_06318" /db_xref="GeneID:10267279" CDS 1509081..1509245 /locus_tag="AGROH133_06318" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278815.1" /db_xref="GI:325292951" /db_xref="GeneID:10267279" /translation="MLRTALTFGLLSATVFLAGCQTWQSPYRGNEWRMDQVMDGDPYR VGDGNRAGRR" gene complement(1509442..1509526) /locus_tag="AGROH133_06319" /db_xref="GeneID:10267280" tRNA complement(1509442..1509526) /locus_tag="AGROH133_06319" /product="tRNA-Leu" /db_xref="GeneID:10267280" gene 1509716..1510447 /gene="lipB" /locus_tag="AGROH133_06320" /db_xref="GeneID:10267281" CDS 1509716..1510447 /gene="lipB" /locus_tag="AGROH133_06320" /EC_number="2.3.1.-" /note="lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; Lipoate-protein ligase B" /codon_start=1 /transl_table=11 /product="lipoate biosynthesis protein B" /protein_id="YP_004278816.1" /db_xref="GI:325292952" /db_xref="GeneID:10267281" /translation="MLTRTDIETNMLPVPGSPPVRWRISEGLVPYELAIEEMEREVAA IANGVADELVWLLEHPPLYTAGTSADVADLIEPERFPVFATGRGGEYTYHGPGQRVVY VMLDLKRRRQDVRAYVAALENVIIRTLDKMNVHGERREDRVGVWVRRPEKPLLPDGSM AEDKIAALGIRLRKWVSFHGLSINVDPDLAHFSGIVPCGISAYGVTSLVDLGLPVMIG DVDVLLREAFEEVFGRAVPEAGSGG" misc_feature 1509764..1510414 /gene="lipB" /locus_tag="AGROH133_06320" /note="Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057" /db_xref="CDD:187213" gene 1510517..1511584 /locus_tag="AGROH133_06321" /db_xref="GeneID:10267282" CDS 1510517..1511584 /locus_tag="AGROH133_06321" /EC_number="1.1.1.2" /note="Alcohol dehydrogenase superfamily, zinc-containing; Zn-dependent alcohol dehydrogenases" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase" /protein_id="YP_004278817.1" /db_xref="GI:325292953" /db_xref="GeneID:10267282" /translation="MFTTSAYACDDGSSPMKLATIKRRDPGPRDVEIEIEFCGVCHSD IHTARSEWPGSLYPCVPGHEIIGRVGRVGAQVTKFKAGDRVGVGCIVDSCRECASCAE GLEQYCENGMTGTYNSPDKAMGGGAHTLGGYSAHVVVDDRYVLRIPEGLDPAAAAPLL CAGITTYSPLRHWNAGPGKRIGVVGLGGLGHMAVKIANAMGATVVMITTSPGKAEDAK KLGAHEVIVSRDADQMKKAASSLDLIIDAVAADHDINAYLALLKRDGALVQVGAPEKP LSVHAFSLIPGRKTFAGSMIGGIPETQEMLDFCAEKGIAAEIEMINIDQINEAYERMI KSDVRYRFVIDMKSLPRQKAA" misc_feature 1510517..1511560 /locus_tag="AGROH133_06321" /note="Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064" /db_xref="CDD:31264" misc_feature 1510532..1511551 /locus_tag="AGROH133_06321" /note="Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283" /db_xref="CDD:176186" misc_feature order(1510637..1510645,1510652..1510654,1510997..1510999, 1511009..1511011,1511069..1511086,1511138..1511143, 1511153..1511155,1511198..1511200,1511255..1511260, 1511264..1511266,1511324..1511329,1511396..1511404) /locus_tag="AGROH133_06321" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature order(1510637..1510639,1510643..1510645,1510703..1510705, 1510781..1510783,1510997..1510999,1511402..1511404) /locus_tag="AGROH133_06321" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature order(1510637..1510639,1510703..1510705,1510997..1510999) /locus_tag="AGROH133_06321" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature order(1510796..1510798,1510805..1510807,1510814..1510816, 1510838..1510840) /locus_tag="AGROH133_06321" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature order(1510835..1510837,1511018..1511020,1511030..1511032, 1511306..1511308,1511321..1511329,1511333..1511335, 1511360..1511362,1511366..1511371,1511378..1511401) /locus_tag="AGROH133_06321" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176186" gene 1511660..1512595 /locus_tag="AGROH133_06322" /db_xref="GeneID:10267283" CDS 1511660..1512595 /locus_tag="AGROH133_06322" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="transporter protein" /protein_id="YP_004278818.1" /db_xref="GI:325292954" /db_xref="GeneID:10267283" /translation="MTSQTGLNDVAKGMMIMAGCMFVLPVMDAIAKYMAVSGGMSPAQ VTFYRFFFQLLCTLPLLLLVSPKALFSARRPWMNCLRGVLHASASLMFFAAVKYMPLA DVFAIYFVEPFMLTMMSALFLGDRVGWKRWTAIAVGFGGALIVIQPSFEIFGWTSLLP VACAFLYTLYLFLNRAIGDADSPLVMQTMSGIAGTVFMAAALLVGDAYGDKDFAISLP QSGFTLTLLIVLGSISGYMHLLIVRAFRLAPLSLLAPFQYFEIISATVLGYALFSDFP TPSKWLGILIIVASGLFIIWRERVQTEANPPLDGQ" misc_feature <1511927..1512535 /locus_tag="AGROH133_06322" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:162128" gene complement(1512610..1513068) /locus_tag="AGROH133_06333" /db_xref="GeneID:10267284" CDS complement(1512610..1513068) /locus_tag="AGROH133_06333" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278819.1" /db_xref="GI:325292955" /db_xref="GeneID:10267284" /translation="MNMAVWIIVFVLLAVFAVYAWRMTRATDEDNNHDVGQAIMDFAR AFPTEAIRSLHMTVDGGAAFVRLHDNKAGFMRNMGSHYVCLMIDPERIRVESLESGDG FVVTFFDTPKYSGSYRFKSAGEAAEVSLWLLGSLVEAQDHHDEGPQPSGA" gene complement(1513229..1514074) /gene="crtB" /locus_tag="AGROH133_06335" /db_xref="GeneID:10267285" CDS complement(1513229..1514074) /gene="crtB" /locus_tag="AGROH133_06335" /EC_number="2.5.1.32" /note="Terpenoid synthase; Phytoene/squalene synthetase" /codon_start=1 /transl_table=11 /product="phytoene synthase" /protein_id="YP_004278820.1" /db_xref="GI:325292956" /db_xref="GeneID:10267285" /translation="MAPTENLDVCLATLRDTDRDRYLACLLSPADKRAALAALYAFNA EIARIRDSVREALPGEVRMQWWRDLLDGNAHGDSQSHPVAAALLLAIEQYRLPRPVLA NMIEARIFDLYDDLFVDRNALEGYAGETASALIQLASLVLSPEDTPASAEAAGHAGVA QAMAGILMLMPLHRRRGQVYIPADMLAAAGLDRETFLEGDDKQRIGIAIEIFATHALD HIEKARRAKMSRNVFAAYLPVALSGPVIAAARKAGAGVFEGEVQLSQLRRQWLLAKAS FLKRF" misc_feature complement(1513271..>1513891) /gene="crtB" /locus_tag="AGROH133_06335" /note="Isoprenoid Biosynthesis enzymes, Class 1; Region: Isoprenoid_Biosyn_C1; cl00210" /db_xref="CDD:197402" gene complement(1514098..1514490) /locus_tag="AGROH133_06336" /db_xref="GeneID:10267286" CDS complement(1514098..1514490) /locus_tag="AGROH133_06336" /note="Protein of unknown function (DUF498/DUF598); Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278821.1" /db_xref="GI:325292957" /db_xref="GeneID:10267286" /translation="MAGGIEIRPAHFPGRAPIDAYGNGGFRFADMSHRGSLLLLPSGI HGWSPVDVKELTLEHFDKVLADAQDIEVLLIGTGDGMRVLPKELREAFRQAGISVDPM STGAAVRTYNIMLSESRAVAAALIAVEG" misc_feature complement(1514113..1514442) /locus_tag="AGROH133_06336" /note="Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as...; Region: Mth938-like; cd00248" /db_xref="CDD:88590" gene complement(1514490..1517054) /gene="secD" /locus_tag="AGROH133_06337" /db_xref="GeneID:10267287" CDS complement(1514490..1517054) /gene="secD" /locus_tag="AGROH133_06337" /note="part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; Preprotein translocase subunit SecD" /codon_start=1 /transl_table=11 /product="bifunctional preprotein translocase subunit SecD/SecF" /protein_id="YP_004278822.1" /db_xref="GI:325292958" /db_xref="GeneID:10267287" /translation="MLHFSRWKTVFIWLLVLASVFIASPNLFSDKQLEGMPAWYKDNK VTLGLDLQGGSHIMLKIERSDIVKERLETIVGDVRTQLRDANIRYSGLTGNGQQIQVR ISDPAQYEAAKTALRDLTQPVSAGTLVGGSITEVTMNDGGDNLLRLNLTDEGVDYRLS SAVSQSIEVVRRRVDEVGTTEPLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFR MVDTTMPVQEAMNGRPPATSEVLYSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTN EPVVTFRFDSRGAQRFAQATQQNVGKPFAIVLDNQVISAPVIREPIIGGSGQISGSFS VQGANDLAVLLRAGALPATLTVVEERTVGPSLGNDSITAGLTASAIGAVGVLIFMFVF YGFFGLLANIALIVNVVMLIAVLSVIGSTLTLPGIAGIVLTIGMAVDSNVLIYERIRE EVKSGKPLIQSLDNGFTRAFATIIDANLTTLIVASVLFYMGTGPVKGFAVTLAVGIIT TVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTAMFDGRDIPFMRYRRVVFMITGVIMLA CVGGFVAKGLNLGIDFQGGSVIEVRAKQGEADLADIRERLNQLNLGEIQAQNFGTPQD VLIRIQAQDGGENAEQSAITLVRGELQDKYDFRRVEVVGPAVSGDLTVTSTIGVVLAM AAIMIYIWVRFEWQFALGAVISMVHDVVFTIGLFVFLGIEFNLTSIAAILTIIGYSLN DTVVIYDRVRENLRRYKKMPLSMIIDVSLNQTLSRTILTGLTVLLALLALYLFGGEVI RSFTFAMLFGVGIGVFSSVYIAAPVLIAFKLRPDSKDAEDEKDEKSGNAIGGKPAV" misc_feature complement(1514556..1517054) /gene="secD" /locus_tag="AGROH133_06337" /note="bifunctional preprotein translocase subunit SecD/SecF; Provisional; Region: PRK14726" /db_xref="CDD:173189" misc_feature complement(1515516..1516205) /gene="secD" /locus_tag="AGROH133_06337" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" misc_feature complement(1515261..1515344) /gene="secD" /locus_tag="AGROH133_06337" /note="SecD/SecF GG Motif; Region: Sec_GG; pfam07549" /db_xref="CDD:116168" misc_feature complement(1514565..1515086) /gene="secD" /locus_tag="AGROH133_06337" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" gene complement(1517134..1517481) /gene="yajC" /locus_tag="AGROH133_06351" /db_xref="GeneID:10267288" CDS complement(1517134..1517481) /gene="yajC" /locus_tag="AGROH133_06351" /note="preprotein translocase, YajC subunit; Preprotein translocase subunit YajC" /codon_start=1 /transl_table=11 /product="preprotein tranlocase protein" /protein_id="YP_004278823.1" /db_xref="GI:325292959" /db_xref="GeneID:10267288" /translation="MFISQAFAQDTAGGASAFGSGLEMLFLFAPLMVVWYFFLIRPQR AQMKKRQETLTNIRRGDQVVLGGGIVGKVTKVIDDNELEVEIAEGVKIRAARAYIAEV RVKGEVVKTESAS" misc_feature complement(1517152..1517442) /gene="yajC" /locus_tag="AGROH133_06351" /note="Preprotein translocase subunit; Region: YajC; cl00806" /db_xref="CDD:193942" gene 1517689..1518561 /locus_tag="AGROH133_06353" /db_xref="GeneID:10267289" CDS 1517689..1518561 /locus_tag="AGROH133_06353" /note="Protein of unknown function DUF815; Predicted ATPase (AAA+ superfamily)" /codon_start=1 /transl_table=11 /product="ATP-dependent protease subunit" /protein_id="YP_004278824.1" /db_xref="GI:325292960" /db_xref="GeneID:10267289" /translation="MIREETATLLLAELRRLNVAMERLAGPAPAVNDWNAADCFVWTP VNSFLQPVSRPNRIALKLIRGVDHVRDILHENTLRFADGFPANNVLLWGARGMGKSSL VKAVHEDVRAASGVPLKLVEVHREDIHTLPALLDILKASGERVIVFCDDLSFDHDDTA YKSLKAALDGGIEGRPDNVLFYATSNRRHLLPRHMMENEQSTAINPSEAVEEKVSLSD RFGLWLGFHKCGQEDYLTMIDSYAEHFDLGLDRETLHHEALEWATTRGGRSGRVAWQY IQDAAGRLRKSIDR" misc_feature 1517743..1518558 /locus_tag="AGROH133_06353" /note="Predicted ATPase (AAA+ superfamily) [General function prediction only]; Region: COG2607" /db_xref="CDD:32599" misc_feature 1517791..1518540 /locus_tag="AGROH133_06353" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 1518794..1520056 /gene="fdhA" /locus_tag="AGROH133_06354" /db_xref="GeneID:10267290" CDS 1518794..1520056 /gene="fdhA" /locus_tag="AGROH133_06354" /EC_number="1.2.1.46" /note="Formaldehyde dehydrogenase, glutathione-independent, Alcohol dehydrogenase GroES-like domain; Threonine dehydrogenase and related Zn- dependent dehydrogenases" /codon_start=1 /transl_table=11 /product="glutathione-independent formaldehyde dehydrogenase" /protein_id="YP_004278825.1" /db_xref="GI:325292961" /db_xref="GeneID:10267290" /translation="MSFDDILSAEERAGIGVQPKEEMDMSKNRGVVYLRPGQVEVRDI DDPKLEAPDGRRIEHGVILKVISTNICGSDQHMVRGRTSAMPGLVLGHEITGEVIEKG VDVEMLDIGDIVSVPFNVACGRCRCCKSQDTGVCLTVNPARAGGAYGYVDMGGWIGGQ ARYVTIPYADFNLLKFPDRDRAMSKIRDLTMLSDILPTGFHGAVKAGVGVGSTVYVAG AGPVGLAAAASARILGAAVVMIGDFNKDRLAHAAKVGFEPVDLSKGDRLGDMIAEIVG TNEVDSAIDAVGFEARGHSGGEQPAIVLNQMMEITRAAGSIGIPGLYVTEDPGAVDAA AKQGSLSLRFGLGWAKAQSFHTGQTPVLKYNRQLMQSILHDRLPIADIVNAKIIALDD AVQGYESFDQGAATKFVLDPHGDLLKSA" misc_feature 1518869..1520035 /gene="fdhA" /locus_tag="AGROH133_06354" /note="formaldehyde dehydrogenase, glutathione-independent; Region: fdhA_non_GSH; TIGR02819" /db_xref="CDD:163032" misc_feature 1518875..1520029 /gene="fdhA" /locus_tag="AGROH133_06354" /note="Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH); Region: PFDH_like; cd08282" /db_xref="CDD:176242" misc_feature order(1519004..1519012,1519019..1519021,1519145..1519147, 1519373..1519375,1519385..1519387,1519445..1519447, 1519451..1519459,1519514..1519522,1519532..1519534, 1519574..1519576,1519649..1519654,1519664..1519669, 1519700..1519702,1519751..1519759,1519862..1519870, 1519991..1519993) /gene="fdhA" /locus_tag="AGROH133_06354" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:176242" misc_feature order(1519004..1519006,1519010..1519012,1519067..1519069, 1519373..1519375) /gene="fdhA" /locus_tag="AGROH133_06354" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176242" misc_feature order(1519157..1519162,1519166..1519168,1519175..1519177, 1519199..1519201) /gene="fdhA" /locus_tag="AGROH133_06354" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176242" gene complement(1520153..1520818) /locus_tag="AGROH133_06355" /db_xref="GeneID:10267291" CDS complement(1520153..1520818) /locus_tag="AGROH133_06355" /note="Bacterial regulatory proteins, tetR family; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional reguator, TetR family" /protein_id="YP_004278826.1" /db_xref="GI:325292962" /db_xref="GeneID:10267291" /translation="MKKSEAGRSTGRPSPTRQRIIAAALQLFNERGPDHVTTAEIARA VNINEGNLYYHFRTKEALVLALFALFETDALAVVAKIDEEDEVAASTYAGFLRLWFSL VWNYRFLFRDLVGLLSSAPALVEPVRGISAAMRLAVDDIVSRMERAGLAEIPETEREA LLTNLWIVSTYWAAYLNLQEGVTEFGPQQLDWGLRQVSSLFRPYLSPLATSELEAMLE VNP" misc_feature complement(1520276..1520797) /locus_tag="AGROH133_06355" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(1520639..1520761) /locus_tag="AGROH133_06355" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1520930..1522324 /gene="cyc" /locus_tag="AGROH133_06357" /db_xref="GeneID:10267292" CDS 1520930..1522324 /gene="cyc" /locus_tag="AGROH133_06357" /EC_number="1.14.-.-" /codon_start=1 /transl_table=11 /product="Cytochrome P450" /protein_id="YP_004278827.1" /db_xref="GI:325292963" /db_xref="GeneID:10267292" /translation="MPGTDLRTPLPDTSAAAPVSKFATARLALSLIRNPLNALPPEIF NEPAVFIRVGGTMRVHLADPVLIHEALVKNAHLLGKGEDVRRALGPALGQGLLTADGD HWKWQRQSVAAAFRHEKLLELLPVMIEAAERTGRRWRASPFGDIDIGHEMMRTTFDII VETMMSGGHGIDIGRVEQSITDYLKPTGWTFALAMLGAPEWLPHPGRRKARAAVGYLR SSLSTVIADRRQNPVERNDLVSMLLEAKDPETGRMMSDKEIVDNLLTFITAGHETTAL GLAWTFNLLSQHSDVERKVVEEIAAVTGGNPVAAEHIAQLTYTRQVFSEAMRLYPPAP VVTRTALQDLKLGDHDIPAGTVLYVPIYAVHRHTALWDEPERFDPSRFEPEKTKARHR YAYMPFGAGPRVCIGNAFAMMEAVSILAGLLQNVHLENRSASPAEPLMRVTLRPQSRL MMRITDRKNKSPAA" misc_feature 1521080..1522204 /gene="cyc" /locus_tag="AGROH133_06357" /note="Cytochrome P450; Region: p450; cl12078" /db_xref="CDD:197442" gene complement(1522379..1522585) /locus_tag="AGROH133_06358" /db_xref="GeneID:10267293" CDS complement(1522379..1522585) /locus_tag="AGROH133_06358" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278828.1" /db_xref="GI:325292964" /db_xref="GeneID:10267293" /translation="MVKADEIKKLDAYFKRTFNEKMVVKARPRKDDSAEVYLGEEFLG VVYIDDEDGDRSYNFSMAILDVDL" misc_feature complement(1522385..1522570) /locus_tag="AGROH133_06358" /note="Protein of unknown function (DUF3126); Region: DUF3126; pfam11324" /db_xref="CDD:151765" gene complement(1522734..1523558) /gene="cysE" /locus_tag="AGROH133_06359" /db_xref="GeneID:10267294" CDS complement(1522734..1523558) /gene="cysE" /locus_tag="AGROH133_06359" /EC_number="2.3.1.30" /note="Serine acetyltransferase, N-terminal" /codon_start=1 /transl_table=11 /product="Serine acetyltransferase" /protein_id="YP_004278829.1" /db_xref="GI:325292965" /db_xref="GeneID:10267294" /translation="MVARTEARQPEQLAIVDPIWGSLLHEARSAVAQDPLLSAFLYST ILNHRSLEECVIYRICELLDHPDMQAVLLRQTFQDMLDDWPEWGSVLRVDIQAVYDRD PACTRFMEPLLYFKGFQAIQTHRLAHWLLQKGRRDLALYLQSRSSSIFQTDINPAARI GKGIFLDHATGLVVGETAVIGDNVSILHGVTLGGTGKEGADRHPKIANGVMIGAGAKI LGNIEIGSCSRIAAGSVVLKPVPPKTTVAGVPARVVGEAGCSEPSRLMDQVIGADI" misc_feature complement(1522755..1523504) /gene="cysE" /locus_tag="AGROH133_06359" /note="serine acetyltransferase; Provisional; Region: cysE; PRK11132" /db_xref="CDD:182987" misc_feature complement(1523190..1523504) /gene="cysE" /locus_tag="AGROH133_06359" /note="Serine acetyltransferase, N-terminal; Region: SATase_N; pfam06426" /db_xref="CDD:191519" misc_feature complement(1522809..1523111) /gene="cysE" /locus_tag="AGROH133_06359" /note="Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-...; Region: LbH_SAT; cd03354" /db_xref="CDD:100045" misc_feature complement(order(1522848..1522850,1522854..1522856, 1522863..1522865,1522953..1522955,1523055..1523057, 1523100..1523102,1523106..1523108)) /gene="cysE" /locus_tag="AGROH133_06359" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100045" misc_feature complement(order(1522809..1522811,1522824..1522826, 1522848..1522850,1522854..1522856,1522863..1522868, 1522872..1522874,1522917..1522919,1522950..1522955, 1522974..1522979,1522995..1523000,1523055..1523060)) /gene="cysE" /locus_tag="AGROH133_06359" /note="active site" /db_xref="CDD:100045" misc_feature complement(order(1522950..1522955,1522977..1522979, 1523055..1523060)) /gene="cysE" /locus_tag="AGROH133_06359" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100045" misc_feature complement(order(1522809..1522811,1522824..1522826, 1522848..1522850,1522854..1522856,1522863..1522868, 1522872..1522874,1522917..1522919,1522974..1522979, 1522995..1523000)) /gene="cysE" /locus_tag="AGROH133_06359" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100045" gene complement(1523702..1524478) /locus_tag="AGROH133_06360" /db_xref="GeneID:10267295" CDS complement(1523702..1524478) /locus_tag="AGROH133_06360" /note="Alpha/beta hydrolase fold-1; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="YP_004278830.1" /db_xref="GI:325292966" /db_xref="GeneID:10267295" /translation="MNLNMPQFSDFSHDGLRLAYFDEGDPAGDPVLLIHGFASSANVN WVHPGWLKTLGDAGYRVIAIDNRGHGASDKPHDPQAYYPPVMAGDAVALLNHLGIAEA HVMGYSMGARISAFLAMAHPERVRSLVFGGLGIGMVEGVGDWDPIAEALLAPSLDVVT HERGRMFRAFADQTKSDRLALAACIETSRVLVSREQAAKIDAPTLIAVGTNDDIAGSG AELAAIMPHARAIDIPGRDHMLAVGDRVFKAAALEFYRSL" misc_feature complement(1523759..1524388) /locus_tag="AGROH133_06360" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" misc_feature complement(<1524251..>1524388) /locus_tag="AGROH133_06360" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 1524649..1524894 /locus_tag="AGROH133_06362" /db_xref="GeneID:10267296" CDS 1524649..1524894 /locus_tag="AGROH133_06362" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278831.1" /db_xref="GI:325292967" /db_xref="GeneID:10267296" /translation="MAGHSIPHFQNDGGHSVIEIGVKEFMCTGASVPFDHPHIFIDMG DDNEKVCSYCSTLYRYNPSLKAEQTNPPGCVFHVKAA" misc_feature 1524649..1524834 /locus_tag="AGROH133_06362" /note="Zinc-finger domain; Region: zf-CHCC; cl01821" /db_xref="CDD:154607" gene 1524924..1526093 /gene="nah" /locus_tag="AGROH133_06363" /db_xref="GeneID:10267297" CDS 1524924..1526093 /gene="nah" /locus_tag="AGROH133_06363" /EC_number="1.14.13.1" /note="FAD dependent oxidoreductase; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases" /codon_start=1 /transl_table=11 /product="salicylate hydroxylase" /protein_id="YP_004278832.1" /db_xref="GI:325292968" /db_xref="GeneID:10267297" /translation="MPIKSVAIVGAGIAGLTAALSFARQGISSDIVEQAGELTEVGAG LQVSPNAARILAELGVMAEIEARWTEPVSVDLADGKSLATLLSLPVGATARTRWGAPY GVLHRSTLQNALLNAVTRNPLCRLHLGKRIENATTDVIAATTFRDHDLIVGADGVWSA ARFAVPSAPTATFSGNIAWRFTVAAKDVPSAINKSAVTAYLGSGGHIVAYPLKEVGGF NIVAIALGADPGATWRAESSGQQKAMLLAQFRGWSPDIVRLLASSENPTFWPLYQAGP GRWHNGRDTVLIGDAAHAMMPFAAQGAAMAIEDAFELAGTLTGTSLPVPQALAAFEAL RLPRIEKARKRASLNRFAYHATGPVRLARDFVFSTRPRAAFLKDFDWLYGYRAKG" misc_feature 1524936..1526084 /gene="nah" /locus_tag="AGROH133_06363" /note="salicylate hydroxylase; Provisional; Region: PRK08163" /db_xref="CDD:181262" misc_feature 1524936..1526084 /gene="nah" /locus_tag="AGROH133_06363" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene complement(1526096..1527283) /gene="metC" /locus_tag="AGROH133_06365" /db_xref="GeneID:10267298" CDS complement(1526096..1527283) /gene="metC" /locus_tag="AGROH133_06365" /EC_number="4.4.1.8" /note="catalyzes the formation of L-homocysteine from cystathionine; Cystathionine beta-lyases/cystathionine gamma- synthases" /codon_start=1 /transl_table=11 /product="cystathionine beta-lyase" /protein_id="YP_004278833.1" /db_xref="GI:325292969" /db_xref="GeneID:10267298" /translation="MTKTNDLLSTAGMNTRLTHGGNDPADCFGFVNPPIVRGSTVLFP DAETLSTENQKYTYGTHGTPTTDALCNLVNELEGSFGTILVPSGLAAITVPFLAYLGA GDHALIVDSVYFPTRRFCNTMLKKLGVEVEYYDPAIGTGIEALIRPNTKLVHLEAPGS NTFEIQDVRLITEIAHRHDCVVTMDNTWATPLYFKPLDFGVDVSIHAATKYPSGHSDV LMGFVSANEKHWKTLYQANTNLGICVTPDDAYQILRGMRSMGIRLAHHQKSALDIATW LESRDDVVSVLHPALPSFAGHELWKRDFKGASGVFSFVLKAEEGKYKQTAAAFLNALT FFGLGYSWGGYESLAVSVSLVDRTIAKGPSEGPVIRLQIGLEDIADLKKDLEAGFAAA AAV" misc_feature complement(1526099..1527283) /gene="metC" /locus_tag="AGROH133_06365" /note="cystathionine beta-lyase; Provisional; Region: PRK05967" /db_xref="CDD:168319" misc_feature complement(1526114..1527193) /gene="metC" /locus_tag="AGROH133_06365" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature complement(order(1526654..1526656,1526663..1526665, 1526720..1526722,1526729..1526731,1526816..1526818, 1527008..1527010,1527017..1527022)) /gene="metC" /locus_tag="AGROH133_06365" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature complement(1526654..1526656) /gene="metC" /locus_tag="AGROH133_06365" /note="catalytic residue [active]" /db_xref="CDD:99742" gene 1527660..1528682 /gene="aapJ" /locus_tag="AGROH133_06366" /db_xref="GeneID:10267299" CDS 1527660..1528682 /gene="aapJ" /locus_tag="AGROH133_06366" /note="Lysine-arginine-ornithine-binding periplasmic protein; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /codon_start=1 /transl_table=11 /product="general L-amino acid-binding periplasmic protein AapJ precursor" /protein_id="YP_004278834.1" /db_xref="GI:325292970" /db_xref="GeneID:10267299" /translation="MKKAILSAVIGAAVLGGASVASAATLQDVKSKGFVTCGVSAGIP GFSNPDDKGEWSGIDVDYCRGIATAVFGDPTKAKFVALSSKDRFPALQSGEVDVLTRN TTWTISRDTSLGFNFRTVNYYDGQGFIAKKGLNVKSALELSGAAVCVQTGTTTELNLA DYFKTNNLQYNPVVFEKESDATSAYDSGRCDVYTTDQSGLYAIRLKLKNPDDNIVLPE VISKEPLGPAVRQGDDQWFDIVTWVHYAMVNAEELGITSKNVDEQKNSANPDIKRLLG TEEGTKIGTDLGVTNDWAYNIVKKVGNYGEVFDRNVGAGSPLKIERGQNALWTKGGLQ YAPPVR" misc_feature 1527753..1528592 /gene="aapJ" /locus_tag="AGROH133_06366" /note="lysine-arginine-ornithine-binding periplasmic protein; Region: 3A0103s03R; TIGR01096" /db_xref="CDD:162200" misc_feature 1527762..1528418 /gene="aapJ" /locus_tag="AGROH133_06366" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(1527786..1527788,1527909..1527911,1527984..1527986, 1528119..1528121,1528245..1528247) /gene="aapJ" /locus_tag="AGROH133_06366" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1528194..1528196,1528206..1528208,1528224..1528226) /gene="aapJ" /locus_tag="AGROH133_06366" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 1528326..1528343 /gene="aapJ" /locus_tag="AGROH133_06366" /note="hinge residues; other site" /db_xref="CDD:29040" gene 1528790..1529986 /gene="aapQ" /locus_tag="AGROH133_06369" /db_xref="GeneID:10267300" CDS 1528790..1529986 /gene="aapQ" /locus_tag="AGROH133_06369" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type amino acid transport system, permease component" /codon_start=1 /transl_table=11 /product="General L-amino acid transport system permease protein aapQ" /protein_id="YP_004278835.1" /db_xref="GI:325292971" /db_xref="GeneID:10267300" /translation="MAGNAVSSQRSRAQSASSLIYDPRIRGIFYQVLTVVILTAFVWI IVTNTITNLQRSNISSGFGFLNGRAGFDIGQSLIAYTSDATYGRALLVGILNTIQVAF FGIIAASIIGFIVGIARLSNNWLISKLAQAYVEIFRNIPPLLVIFFWYKGVISVLPQA RDSLQLPLGTYLNNRGFFFPKPLWGEGTWLIPLAFVVAIVISVFIYRWAKARQERTGE QFRTGITATLLIIGLPAATFLALGSPLTFDYPIAGRFNLAGGSVVAPEFMSLFLALSF YTASFIAEIVRGGIKAVAKGQTEAAEALGLRASTTTRLIVVPQAMRIIIPPLTSQYLN LTKNSSLAVAVGFADIVSVGGTILNQTGQAVEVVAIWLVLYLSLSILTAVVMNWLNAK MALVER" misc_feature 1528844..1529983 /gene="aapQ" /locus_tag="AGROH133_06369" /note="ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: BatB; COG4597" /db_xref="CDD:34232" misc_feature 1529015..>1529284 /gene="aapQ" /locus_tag="AGROH133_06369" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" misc_feature <1529588..1529932 /gene="aapQ" /locus_tag="AGROH133_06369" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1529600..1529602,1529816..1529818,1529852..1529854, 1529861..1529863,1529891..1529893) /gene="aapQ" /locus_tag="AGROH133_06369" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1529615..1529620,1529624..1529626,1529630..1529632, 1529639..1529644,1529648..1529650,1529660..1529665, 1529672..1529674,1529723..1529725,1529765..1529770, 1529777..1529779,1529798..1529809,1529816..1529821, 1529858..1529863,1529891..1529896,1529903..1529908, 1529912..1529917,1529924..1529929) /gene="aapQ" /locus_tag="AGROH133_06369" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1529675..1529713,1529729..1529734,1529744..1529746) /gene="aapQ" /locus_tag="AGROH133_06369" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1529990..1531147 /gene="aapM" /locus_tag="AGROH133_06379" /db_xref="GeneID:10267301" CDS 1529990..1531147 /gene="aapM" /locus_tag="AGROH133_06379" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type amino acid transport system, permease component" /codon_start=1 /transl_table=11 /product="general L-amino acid transport system permease protein AapM" /protein_id="YP_004278836.1" /db_xref="GI:325292972" /db_xref="GeneID:10267301" /translation="MTISNHAFVRHTIEEAKPAPSSAVGISHWLRTKLFATPKDTVLT VLAIAFLAYLLPPIFKWLFVDAVWTGTDRIACLTASQGGALADGQSGACWAFVSAKFG QIMFGRYPIDERWRPILVMVMFTILLVPMLIPKAPFKRLNALALFIILPVIAFFLLIG GVFGLPVVETQLWGGLMVTLILSFFGIAVSLPFGILLALGRRSNLPVIKMLCVLFIEV IRGIPLITVLFFASIMLPLFLPDGWTFDKFLRALVGVSLFSSAYMAEVIRGGLQAIPK GQYEGADSLGLNYWQKTRLIVLPQALKLVIPGIVNTFIGLFKDTSLVSIIGMFDLLGI VTLNQSDANWATPVTAMTGYIFAGFIFWIFCFGMSRYSLFMERHLDTGHKR" misc_feature 1530500..1531144 /gene="aapM" /locus_tag="AGROH133_06379" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature 1530515..1531096 /gene="aapM" /locus_tag="AGROH133_06379" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1530563..1530568,1530575..1530580,1530593..1530595, 1530623..1530634,1530638..1530667,1530674..1530679, 1530683..1530685,1530758..1530763,1530767..1530769, 1530773..1530775,1530782..1530787,1530791..1530793, 1530803..1530808,1530815..1530817,1530866..1530868, 1530908..1530913,1530920..1530922,1530941..1530952, 1530959..1530964,1531001..1531006,1531049..1531054, 1531061..1531066,1531070..1531075,1531082..1531087, 1531094..1531096) /gene="aapM" /locus_tag="AGROH133_06379" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1530641..1530685,1530941..1530958) /gene="aapM" /locus_tag="AGROH133_06379" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1530683..1530685,1530743..1530745,1530959..1530961, 1530995..1530997,1531004..1531006,1531049..1531051) /gene="aapM" /locus_tag="AGROH133_06379" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1530818..1530856,1530872..1530877,1530887..1530889) /gene="aapM" /locus_tag="AGROH133_06379" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1531160..1531933 /gene="aapP" /locus_tag="AGROH133_06388" /db_xref="GeneID:10267302" CDS 1531160..1531933 /gene="aapP" /locus_tag="AGROH133_06388" /EC_number="3.6.3.21" /note="ABC transporter related; ABC-type polar amino acid transport system, ATPase component" /codon_start=1 /transl_table=11 /product="general L-amino acid transport ATP-binding protein AapP" /protein_id="YP_004278837.1" /db_xref="GI:325292973" /db_xref="GeneID:10267302" /translation="MAETQTKKLAVSTTDVAIELVGMNKWYGDFHVLRDINLKVMKGE RIVIAGPSGSGKSTMIRCINRLEEHQSGTINVDGIELTNDLKKIDEVRREVGMVFQHF NLFPHLTILENCTLAPIWVRKMPKKEAEEVAMHYLKRVKIPEQAHKYPGQLSGGQQQR VAIARSLCMKPKIMLFDEPTSALDPEMVKEVLDTMVSLAEDGMTMLCVTHEMGFARQV ANRVIFMDQGQIVEQNSPAEFFDNPQHERTRLFLSQILH" misc_feature 1531211..1531927 /gene="aapP" /locus_tag="AGROH133_06388" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:31323" misc_feature 1531211..1531849 /gene="aapP" /locus_tag="AGROH133_06388" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 1531307..1531330 /gene="aapP" /locus_tag="AGROH133_06388" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(1531316..1531321,1531325..1531333,1531457..1531459, 1531688..1531693,1531787..1531789) /gene="aapP" /locus_tag="AGROH133_06388" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 1531448..1531459 /gene="aapP" /locus_tag="AGROH133_06388" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 1531616..1531645 /gene="aapP" /locus_tag="AGROH133_06388" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 1531676..1531693 /gene="aapP" /locus_tag="AGROH133_06388" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 1531700..1531711 /gene="aapP" /locus_tag="AGROH133_06388" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 1531775..1531795 /gene="aapP" /locus_tag="AGROH133_06388" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene 1532381..1532455 /locus_tag="AGROH133_06389" /db_xref="GeneID:10267303" tRNA 1532381..1532455 /locus_tag="AGROH133_06389" /product="tRNA-Glu" /anticodon=(pos:1532414..1532416,aa:Glu) /db_xref="GeneID:10267303" gene 1532457..1532687 /locus_tag="AGROH133_06390" /db_xref="GeneID:10267304" CDS 1532457..1532687 /locus_tag="AGROH133_06390" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278838.1" /db_xref="GI:325292974" /db_xref="GeneID:10267304" /translation="MPSCFPLRKYKAASQIANSSRLIDAPEPIPGRYVRVVSPPMEGE PDESPAGKSTGLPFPFQPNHTVGYFWRAADAS" gene 1532908..1532982 /locus_tag="AGROH133_06391" /db_xref="GeneID:10267305" tRNA 1532908..1532982 /locus_tag="AGROH133_06391" /product="tRNA-Glu" /anticodon=(pos:1532941..1532943,aa:Glu) /db_xref="GeneID:10267305" gene complement(1533112..1534920) /gene="recJ" /locus_tag="AGROH133_06392" /db_xref="GeneID:10267306" CDS complement(1533112..1534920) /gene="recJ" /locus_tag="AGROH133_06392" /EC_number="3.1.-.-" /note="Bacterial RecJ exonuclease; Single-stranded DNA-specific exonuclease" /codon_start=1 /transl_table=11 /product="single-stranded-DNA-specific exonuclease" /protein_id="YP_004278839.1" /db_xref="GI:325292975" /db_xref="GeneID:10267306" /translation="MAMMEPADTVVRAFLSVERSATEQRWVSRLDQAAQNRALAMSQI HAIPELIARVLAGRGVGVDEALAFLDPTIRSLMPDPHMLTDCEKAAERLVRAIETGEK VAIFGDYDVDGAASSALMYRFLAHFGLTPKIYIPDRIFEGYGPNPAAMQQLAANGATL ILTVDCGSTSHESLNAAKDAGTDVVVIDHHQVGSELPPAVALVNPNREDDLSGQGHLC AAGVVFLVLVATLRLLKDRRNRQAFTIDLLALLDIVALATVCDVVPLKGLNRAYVVKG LIAARHMNNAGLAALFRKAGLGGPVTPYHFGFLIGPRINAGGRIGDAALGSRLLTLDD SSQADVIAEKLDELNRERQAMEAVMLAEAEAEALYEYGDGSGAGVIVTARENWHPGIV GLLASRLKDRFRRPAFAIAFDPSGKGTGSGRSINGFDMGRMVRAAVDAGLLVKGGGHA MAAGLTVERANLGKLRTFFEEAAAKTVSELVESSVLKIDGAIGASGATLQLVDQLEQA GPYGSGHSQPIFAVPAHRLRDVRLVGTSHVKITLEAMDGSRLDGIAFRAAEAPLGQML LNARGRSIHVAGTVGADLWQGQRRVQLRVLDAAFAP" misc_feature complement(1533127..1534782) /gene="recJ" /locus_tag="AGROH133_06392" /note="single-stranded-DNA-specific exonuclease RecJ; Region: recJ; TIGR00644" /db_xref="CDD:161976" misc_feature complement(1534222..1534635) /gene="recJ" /locus_tag="AGROH133_06392" /note="DHH family; Region: DHH; pfam01368" /db_xref="CDD:189957" misc_feature complement(1533508..1533708) /gene="recJ" /locus_tag="AGROH133_06392" /note="DHHA1 domain; Region: DHHA1; pfam02272" /db_xref="CDD:190268" gene complement(1535024..1535242) /locus_tag="AGROH133_06393" /db_xref="GeneID:10267307" CDS complement(1535024..1535242) /locus_tag="AGROH133_06393" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278840.1" /db_xref="GI:325292976" /db_xref="GeneID:10267307" /translation="MTSIILFKDSKRESVLAAHHRARPHNANDNIRGMEFDIAECERN WCSLAVFSLLLLVGAVSIVSPFFSIFSV" gene complement(1535436..1536746) /gene="hom" /locus_tag="AGROH133_06395" /db_xref="GeneID:10267308" CDS complement(1535436..1536746) /gene="hom" /locus_tag="AGROH133_06395" /EC_number="1.1.1.3" /note="catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine" /codon_start=1 /transl_table=11 /product="Homoserine dehydrogenase" /protein_id="YP_004278841.1" /db_xref="GI:325292977" /db_xref="GeneID:10267308" /translation="MADSLRIGIAGLGTVGASLVRILQQRSNELAITCGRAIEIIAVS ARDRSRDRGIDLKGITWFDTPEQLANEADIDVLVELVGGASGQAEKAVRAALSRGLHV VTANKALLAKHGVELATIAEEKGALLNFEAAVAGGIPVIKALRESLTGNNVSRIYGIM NGTCNYILTKMEKEGLSFEVCLKEAQRLGYAEADPAFDIEGNDTAHKLAILTTLAFGN KISADDIYLEGITNISSEDIQAAAELGYRIKLLGVAQVTESGIEQRVHPTMVPLDSVI AQVDGVTNAVAIESDILGELLMVGPGAGGNATASAVLGDIADIAKSRPGAQQVPVLGR PAKSLTDYRRAKMKSHEGGYFIRLTVKDQAGVFASIATRMADNNISLESIVQRQRVHV EGAPQTIILVTHATMEDAIRKAVKAIKNEKYLVSEPQVIRIERT" misc_feature complement(1535445..1536743) /gene="hom" /locus_tag="AGROH133_06395" /note="homoserine dehydrogenase; Provisional; Region: PRK06349" /db_xref="CDD:180538" misc_feature complement(1536354..1536716) /gene="hom" /locus_tag="AGROH133_06395" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(1535799..1536332) /gene="hom" /locus_tag="AGROH133_06395" /note="Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742" /db_xref="CDD:189696" misc_feature complement(1535445..1535687) /gene="hom" /locus_tag="AGROH133_06395" /note="ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains; Region: ACT_HSDH-Hom; cd04881" /db_xref="CDD:153153" gene complement(1536808..1538028) /locus_tag="AGROH133_06396" /db_xref="GeneID:10267309" CDS complement(1536808..1538028) /locus_tag="AGROH133_06396" /EC_number="2.6.1.-" /note="Pyridoxal phosphate-dependent transferase, major region, Aminotransferase class I and II; Aspartate/tyrosine/aromatic aminotransferase" /codon_start=1 /transl_table=11 /product="aminotransferase, class I" /protein_id="YP_004278842.1" /db_xref="GI:325292978" /db_xref="GeneID:10267309" /translation="MEEFHKVRRLPQYVFEQVNRLKASARAAGADIIDLGMGNPDLPT PKAIVDKLCEVVQDPRTHRYSSSKGIPGLRRAQAGYYARRFGVKLNPDTQVVATLGSK EGFANMAQAITAPGDVILCPNPTYPIHAFGFLMAGGVIRSMNVEPDESFFGPLERAVR HSIPKPLALIVNYPSNPTAHVASLDFYKDVIAFAKKHEIIVLSDLAYSEIYFDDNNPP PSVLEVPGAIDVAVEFTSMSKTFSMPGWRMGFAVGNERLIAALTRVKSYLDYGAFTPI QVAATHALNGDGSDIAEVRSVYRRRRDVMVDTFGKAGFEVPPPAATMFAWAKIPEKFR HLGSLEFSKLLVEKADIAVAPGIGFGEMGDDYVRLALVENEHRIRQAARNLKRFLSSA DETMHNVVSLNAHR" misc_feature complement(1536871..1537989) /locus_tag="AGROH133_06396" /note="aspartate aminotransferase; Provisional; Region: PRK07681" /db_xref="CDD:181081" misc_feature complement(1536868..1537932) /locus_tag="AGROH133_06396" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(1537288..1537290,1537312..1537317, 1537321..1537323,1537408..1537410,1537501..1537503, 1537651..1537653,1537723..1537731)) /locus_tag="AGROH133_06396" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(1537192..1537194,1537201..1537203, 1537288..1537296,1537429..1537431,1537621..1537623, 1537720..1537722)) /locus_tag="AGROH133_06396" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(1537312..1537314) /locus_tag="AGROH133_06396" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 1538116..1538253 /locus_tag="AGROH133_06397" /db_xref="GeneID:10267310" CDS 1538116..1538253 /locus_tag="AGROH133_06397" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278843.1" /db_xref="GI:325292979" /db_xref="GeneID:10267310" /translation="MGAIHCTAKHKKTYSGFLGPRGIAIIRLVAPARPFQTKGKANCA M" gene complement(1538329..1539288) /gene="iunH" /locus_tag="AGROH133_06398" /db_xref="GeneID:10267311" CDS complement(1538329..1539288) /gene="iunH" /locus_tag="AGROH133_06398" /EC_number="3.2.2.-" /note="Inosine-uridine nucleoside N-ribohydrolase" /codon_start=1 /transl_table=11 /product="inosine-uridine preferring nucleoside hydrolase" /protein_id="YP_004278844.1" /db_xref="GI:325292980" /db_xref="GeneID:10267311" /translation="MHKVIFDTDPGVDDAMALLFLHRHPDIDLIGVTTVFGNAPIDIT TRNALFLKREWQMTAPVAKGAGVTFNPARKEGHWPTFIHGENGLGDIDIPETIDLPLD PRPAHRFIIETVKANPGEVTLIAVGRMTNLALALREEPDFAALVKQVIVMGGAFDING NVSPAAEANIHGDPEAADLVFTAPWRVVVVGLDVTTKTVMTSAFMAEMAEAGGKPVQL LSDLSQFYIDFYKTRTGDGMVVHDSCACVYLVAPELFETRSGPIRVVCGGLADGQTIQ KPDGRAFPPGDWDGHPSQLICTDIKPERVLSVIRAAIVKGERD" misc_feature complement(1538362..1539282) /gene="iunH" /locus_tag="AGROH133_06398" /note="NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base...; Region: nuc_hydro_CaPnhB; cd02650" /db_xref="CDD:29578" misc_feature complement(order(1538563..1538565,1538782..1538784, 1538788..1538790,1538806..1538808,1538911..1538913, 1539175..1539177,1539247..1539252,1539262..1539264)) /gene="iunH" /locus_tag="AGROH133_06398" /note="active site" /db_xref="CDD:29578" gene 1539330..1540271 /locus_tag="AGROH133_06399" /db_xref="GeneID:10267312" CDS 1539330..1540271 /locus_tag="AGROH133_06399" /note="Protein of unknown function DUF81; Predicted permeases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278845.1" /db_xref="GI:325292981" /db_xref="GeneID:10267312" /translation="MRHGNIPISGNTAIPLPVSDRREKYCVAIFSVKEEALSLKPAWT CQVQDIALNVFLVLFCVAIFAGFIDSIAGGGGLITIPAMLIMGIPPLDTLGTNKLQSQ FGSASATIAYARRGHVNLREQLPMAIMAMIGGELGAFTAAFVPSDLLRTIMPFLLIAI ALYFAFKPQLSDIDSHRRITPFVFGLTAAPLVGFYDGVFGPGAGSFYMLAFVGLAGFG MLKATAHTKLLNLGSNFGGFVVFAAGGAVLWKLGIAMGIGQFVGAQIGSRFAMKNGAK IIRPLLVLSCLAMATKLLADASSAWSIATIWETIFPK" misc_feature 1539489..1540217 /locus_tag="AGROH133_06399" /note="Predicted permeases [General function prediction only]; Region: COG0730; cl00498" /db_xref="CDD:186038" misc_feature 1539501..1540208 /locus_tag="AGROH133_06399" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene complement(1540315..1541013) /locus_tag="AGROH133_06407" /db_xref="GeneID:10267313" CDS complement(1540315..1541013) /locus_tag="AGROH133_06407" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278846.1" /db_xref="GI:325292982" /db_xref="GeneID:10267313" /translation="MKDLIELFWLRYTELQSAVGKNEADKIAVLERELELLLDRVIGR KTGSSEDIREQFRFAIDLLNHEAEDLGCVQRNSDLLRTLVDRYVGMPLKAKVIGDEDE DILEWHHRHLILDEDMLNDLDEPVVVVSPGYRVSFSNGIDAFPRNTPEGPLGCHIAEL VGVHRFQNDLRERLDNCFKGGTSKYTYAEDHDGHTIVKSLEMSPCYSSNYKLVGAMVV IREIADRRRRRATA" gene complement(1541293..1542294) /gene="msbB" /locus_tag="AGROH133_06408" /db_xref="GeneID:10267314" CDS complement(1541293..1542294) /gene="msbB" /locus_tag="AGROH133_06408" /EC_number="2.3.1.-" /note="Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Lauroyl/myristoyl acyltransferase" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis lauroyl acyltransferase" /protein_id="YP_004278847.1" /db_xref="GI:325292983" /db_xref="GeneID:10267314" /translation="MTGRWSAWKRARYSAKSFCGWIDALKLFITRIVLKLDHFRQWLI ATFAFGLLNLLKIFPADAGIRAADRLARFVGPKTGRHKLMLYNLARAFPEKSEEERLT IAMDSWGSMGRLAAEYVFLDRLFDFDPENSEPGRIRVEGISTFIELRDNPRPFIVFTA HSGNFELLPVASSAFGLDVTVLFRPPNNPFVADKVFKFRKERMGNLVPSHAGSSFALA RQLERGGGVGVLVDQKFGKGLTTKFFGHEVRTNPLLAKLVRQFNCDVYPARCVRLPDN RYRLEIEPRVEIPRDEKGNVDIQATAQLLNDKVESWVREYPEQWLWYHDRWDVKHQI" misc_feature complement(1541314..1541889) /gene="msbB" /locus_tag="AGROH133_06408" /note="Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984" /db_xref="CDD:153246" misc_feature complement(order(1541590..1541598,1541737..1541748, 1541797..1541799,1541803..1541805,1541812..1541814)) /gene="msbB" /locus_tag="AGROH133_06408" /note="putative acyl-acceptor binding pocket; other site" /db_xref="CDD:153246" gene complement(1542227..1543255) /locus_tag="AGROH133_06409" /db_xref="GeneID:10267315" CDS complement(1542227..1543255) /locus_tag="AGROH133_06409" /EC_number="1.1.1.1" /note="Alcohol dehydrogenase superfamily, zinc-containing, Zinc-binding dehydrogenase; NADPH:quinone reductase and related Zn- dependent oxidoreductases" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase" /protein_id="YP_004278848.1" /db_xref="GI:325292984" /db_xref="GeneID:10267315" /translation="MRALQLVDDRKLEKVDLPEPDAPGPGEVTLRVKAVALNHIDVWG WRGMAFAKRKMPLTIGAEASGVVEAIGPGVSNVLPGQLVAIYGARTCGICKPCREGRD NLCEHVQGVHGFHLDGFAQEKINIPARQLVPAPHGVDAIGAALAPVTFGTVEHMLFDN AKLESGETILVHAGGSGIGTAAIQLAKKMGCTVITTVGSDDKIERAKALGADHVINYR TDRFEGVVRKLTKKKGVDVVFEHVGKDTWAGSMFSLKRGGRLVTCGSTSGVSTDINLM MLFQQQLKLLGSFGCRMENMANAMQKMARGIVHPVIDTEVTFEDIDRALERMETRQVF GKIVLRMD" misc_feature complement(1542233..1543255) /locus_tag="AGROH133_06409" /note="NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Region: Qor; COG0604" /db_xref="CDD:30949" misc_feature complement(1542236..1543255) /locus_tag="AGROH133_06409" /note="Alcohol dehydrogenases of the MDR family; Region: Zn_ADH_like1; cd08266" /db_xref="CDD:176227" misc_feature complement(order(1542386..1542394,1542464..1542469, 1542524..1542526,1542530..1542535,1542605..1542607, 1542650..1542652,1542662..1542667,1542719..1542724, 1542728..1542739,1542800..1542802,1542812..1542814, 1543127..1543129,1543136..1543144)) /locus_tag="AGROH133_06409" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176227" misc_feature complement(order(1542941..1542943,1542965..1542967, 1542974..1542976,1542983..1542985)) /locus_tag="AGROH133_06409" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176227" gene complement(1543408..1544691) /gene="fabF1" /locus_tag="AGROH133_06410" /db_xref="GeneID:10267316" CDS complement(1543408..1544691) /gene="fabF1" /locus_tag="AGROH133_06410" /EC_number="2.3.1.41" /note="FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl-carrier-protein) synthase" /codon_start=1 /transl_table=11 /product="3-oxoacyl-acyl carrier protein synthase II" /protein_id="YP_004278849.1" /db_xref="GI:325292985" /db_xref="GeneID:10267316" /translation="MTSNFKDHLGRPIVAVTGMGIITSLGQGLADNWAALTAGKSGIH KITRFPTEGLSTRISGTVDFIDIPVPNSVERSYAFARETTIEALAQAGISGDFDGPLF LAAPPIEPEWSARFELADRSPPAAQPGDAYERFLTAFRQRPDPAFQEAALFGAISERL SDRFGTRGLPVTLSTACASGATAIQLGVEAIRQGRTERALTVATDGSVSAEALIRFSL LSALSTQNEPPEKASKPFSKDRDGFVIAEGAATLVLESLESAIARGAKVLGIIKGAGE KADSFHRTRSSPDGGPAIATIRAALADAGVAESDIGYINAHGTSTPENDKMEYGSMLA VFGEGLKDIPLSSNKSMIGHTLTAAGAVEAVFSLQTMLTGTLPPTINYNNPDPTISLD VVPNVKRDATVNAVLSNSFGFGGQNASLVMTREPA" misc_feature complement(1543411..1544685) /gene="fabF1" /locus_tag="AGROH133_06410" /note="3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK06501" /db_xref="CDD:180594" misc_feature complement(1543426..1544652) /gene="fabF1" /locus_tag="AGROH133_06410" /note="Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834" /db_xref="CDD:29421" misc_feature complement(order(1543444..1543446,1543450..1543452, 1543807..1543809,1543849..1543863,1544035..1544040, 1544047..1544052,1544113..1544115,1544122..1544127, 1544134..1544136,1544170..1544178,1544182..1544184, 1544188..1544190,1544206..1544208,1544218..1544220, 1544230..1544232,1544248..1544250,1544284..1544289, 1544293..1544295,1544305..1544310,1544329..1544331)) /gene="fabF1" /locus_tag="AGROH133_06410" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29421" misc_feature complement(order(1543630..1543632,1543741..1543743, 1544161..1544163)) /gene="fabF1" /locus_tag="AGROH133_06410" /note="active site" /db_xref="CDD:29421" gene complement(1544704..1545900) /gene="fabF2" /locus_tag="AGROH133_06411" /db_xref="GeneID:10267317" CDS complement(1544704..1545900) /gene="fabF2" /locus_tag="AGROH133_06411" /EC_number="2.3.1.41" /note="FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl-carrier-protein) synthase" /codon_start=1 /transl_table=11 /product="3-oxoacyl-acyl carrier protein synthase II" /protein_id="YP_004278850.1" /db_xref="GI:325292986" /db_xref="GeneID:10267317" /translation="MKSDNDVVITGVGIVTCHGVGSQAHLALLSGTAAPATVIETEKF KPYPVHPMPEIDWSTQIAKRGDQRQMENWQRLGVFAAGLALDDAGLKENPEACATMDM IVAAGGGERDINVDTLIVDEALKRNDREVLLNEKLTTELRPTLFLAQLSNLMAGNISI VHKVTGSSRTFMGEEAAGISAVETAFHRIRSGESSHALVGGAFSAERPDMILLFEAIG AHAQGDWQPLWSRGGQDGGGMISGSLGAFLVLESRKHASERGARIYARIDAIEGDRGS RDDGKMEKRMERLLAPAKDSAATVVFSGASGYDAVTQREKNILEKALPQAVIRGFGGI TGHGLEAQFPLGLALAALTLESGAKVPTFDGAAEKPMGEAASEAVVTTVGHVRGEGVA VLSRDV" misc_feature complement(1544713..1545900) /gene="fabF2" /locus_tag="AGROH133_06411" /note="3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK06519" /db_xref="CDD:180600" misc_feature complement(1544815..1545888) /gene="fabF2" /locus_tag="AGROH133_06411" /note="Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the...; Region: cond_enzymes; cl09938" /db_xref="CDD:197436" misc_feature complement(order(1544890..1544892,1545376..1545378)) /gene="fabF2" /locus_tag="AGROH133_06411" /note="active site" /db_xref="CDD:73194" gene complement(1545897..1546097) /locus_tag="AGROH133_06412" /db_xref="GeneID:10267318" CDS complement(1545897..1546097) /locus_tag="AGROH133_06412" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278851.1" /db_xref="GI:325292987" /db_xref="GeneID:10267318" /translation="MPGDGIFPLDPVLIHENRGLVLADRAFTIANPHRALYSATHGVV VCDRCWIAVTASMGQAAKDDRR" gene complement(1546110..1546589) /gene="fabZ" /locus_tag="AGROH133_06413" /db_xref="GeneID:10267319" CDS complement(1546110..1546589) /gene="fabZ" /locus_tag="AGROH133_06413" /EC_number="4.2.1.-" /note="Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases" /codon_start=1 /transl_table=11 /product="3R-hydroxymyristoyl-acyl carrier protein-dehydratase" /protein_id="YP_004278852.1" /db_xref="GI:325292988" /db_xref="GeneID:10267319" /translation="MLLEYFQMIDKVEAVDMATRTLKARSVVPDKSPVFEGHFPGMPL VPGVLLIETMAQASGMMVLAFSDFSAMPFLMSVDGAKMRTFVEPGAVLDIEAVLEHDG SGFAVTKAKITCEGKKVCDAQLKLRTMPFSEIPLAPIVRKRAEEVGLMAAIVADAQK" misc_feature complement(1546218..1546574) /gene="fabZ" /locus_tag="AGROH133_06413" /note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288" /db_xref="CDD:48033" gene complement(1546679..1546957) /gene="acpP" /locus_tag="AGROH133_06414" /db_xref="GeneID:10267320" CDS complement(1546679..1546957) /gene="acpP" /locus_tag="AGROH133_06414" /note="Acyl carrier protein-like" /codon_start=1 /transl_table=11 /product="Acyl carrier protein" /protein_id="YP_004278853.1" /db_xref="GI:325292989" /db_xref="GeneID:10267320" /translation="MTATFDKVADIIAETSEIDRETITPESHTIDDLGIDSLDFLDIV FAIDKEFGIKIPLEQWTQEVNEGKVTTEEYFVLKNLCAKIDELRAAKG" misc_feature complement(1546682..1546957) /gene="acpP" /locus_tag="AGROH133_06414" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" gene complement(1547078..1548427) /gene="hemN" /locus_tag="AGROH133_06415" /db_xref="GeneID:10267321" CDS complement(1547078..1548427) /gene="hemN" /locus_tag="AGROH133_06415" /EC_number="1.3.99.22" /note="catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases" /codon_start=1 /transl_table=11 /product="oxygen-independent coproporphyrinogen III oxidase" /protein_id="YP_004278854.1" /db_xref="GI:325292990" /db_xref="GeneID:10267321" /translation="MNTELLRKYSGAVPRYTSYPTAPHFHEGIDNGTYRRWLGELGHR NRISLYLHIPYCDRLCWFCACHTKHTLKYEPIAVYLEALKREIAAVGSLVSPDAVVSA VHFGGGSPTMLRPEDMVGLMDCLKRHFTFGLAPEISVEMDPNDLDESRYDALAAIGMT RASLGVQDFDDKVQKTINRIQTFEQTESVVDAVRARGVHSVNCDILYGLPFQTCETLQ QTVDQIISLDPDRIALFGYAHVPWMKKHQSLIPEQALPDIAERYRQMTMAAEMLGKAG YRAIGIDHFAKPADTLSRAVETGELRRNFQGYTTDTADALIGLGASAIGRLPQGYVQN MVATGEYQRMVGEGGFAVLKGIELSEEDHLRSYVIERLMCDFLLDLGDLKRRFGKASH SVSMEAQLFAGGDRDGVVRMDGDVFAVTEAGKPFVRHIAATFDAYLGSGRGRHSVAV" misc_feature complement(1547081..1548427) /gene="hemN" /locus_tag="AGROH133_06415" /note="coproporphyrinogen III oxidase; Provisional; Region: PRK09249" /db_xref="CDD:181727" misc_feature complement(1547705..1548262) /gene="hemN" /locus_tag="AGROH133_06415" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature complement(order(1547717..1547722,1547810..1547812, 1547933..1547935,1548002..1548010,1548101..1548106, 1548110..1548112,1548236..1548244,1548248..1548250, 1548254..1548256,1548260..1548262)) /gene="hemN" /locus_tag="AGROH133_06415" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature complement(<1547258..1547512) /gene="hemN" /locus_tag="AGROH133_06415" /note="HemN C-terminal region; Region: HemN_C; pfam06969" /db_xref="CDD:191656" gene 1548640..1549365 /gene="fnrL" /locus_tag="AGROH133_06416" /db_xref="GeneID:10267322" CDS 1548640..1549365 /gene="fnrL" /locus_tag="AGROH133_06416" /note="Bacterial regulatory proteins, crp family; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases" /codon_start=1 /transl_table=11 /product="transcriptional regulator, Crp family" /protein_id="YP_004278855.1" /db_xref="GI:325292991" /db_xref="GeneID:10267322" /translation="MDTLQKTIHNSEYPVVCRSCEARHGGLCSTLTPQQLCDLNRHSS RKKLEAGNELLAQGELVSSYGNILNGVVKLSKMMSDGRQQIVGLQFAPDFLGRPFMAE SKMTAEAATDVEICLFPRRIVDRMVSEVPDMERKLHSQSLKELDEARDWMLTLGRKSA QEKVASFLYMIATHIDPEKDDKSTFDLPLSRADIADFLGLTIETVSRQMTKLRKEGTI SIENNRHITVPDLDMLSEAAGND" misc_feature 1548718..1549053 /gene="fnrL" /locus_tag="AGROH133_06416" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature 1548730..1549332 /gene="fnrL" /locus_tag="AGROH133_06416" /note="cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:31008" misc_feature order(1548925..1548930,1548946..1548954) /gene="fnrL" /locus_tag="AGROH133_06416" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature order(1549012..1549020,1549030..1549038) /gene="fnrL" /locus_tag="AGROH133_06416" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature 1549117..1549329 /gene="fnrL" /locus_tag="AGROH133_06416" /note="helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092" /db_xref="CDD:28976" misc_feature 1549126..1549131 /gene="fnrL" /locus_tag="AGROH133_06416" /note="putative switch regulator; other site" /db_xref="CDD:28976" misc_feature order(1549201..1549203,1549207..1549215,1549240..1549242) /gene="fnrL" /locus_tag="AGROH133_06416" /note="non-specific DNA interactions [nucleotide binding]; other site" /db_xref="CDD:28976" misc_feature 1549240..1549260 /gene="fnrL" /locus_tag="AGROH133_06416" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:28976" misc_feature order(1549243..1549248,1549258..1549260) /gene="fnrL" /locus_tag="AGROH133_06416" /note="sequence specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28976" misc_feature 1549243..1549248 /gene="fnrL" /locus_tag="AGROH133_06416" /note="putative cAMP binding site [chemical binding]; other site" /db_xref="CDD:28976" gene 1549412..1549549 /locus_tag="AGROH133_06418" /db_xref="GeneID:10267323" CDS 1549412..1549549 /locus_tag="AGROH133_06418" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278856.1" /db_xref="GI:325292992" /db_xref="GeneID:10267323" /translation="MLMYGARACAGASAKPARTSKAAMHLMIFHPVYRFFSGLFVMTA S" gene complement(1549747..1550175) /locus_tag="AGROH133_06419" /db_xref="GeneID:10267324" CDS complement(1549747..1550175) /locus_tag="AGROH133_06419" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278857.1" /db_xref="GI:325292993" /db_xref="GeneID:10267324" /translation="MTMGKHMGTWGRFAENAGRIALLSLSGAMLVTVLAACKTPAPIV APAHMPHPQAQIVGPRPVSDNVVSQRRDTGTYPSFSAPITAAGSQMGDDEASKMESNL SRLGAARRNGQISEAEYKRRVAELRALGENQKPVATPATQ" gene 1550308..1552167 /gene="phbC" /locus_tag="AGROH133_06421" /db_xref="GeneID:10267325" CDS 1550308..1552167 /gene="phbC" /locus_tag="AGROH133_06421" /EC_number="2.3.1.-" /note="Poly(R)-hydroxyalkanoic acid synthase, class I; Poly(3-hydroxyalkanoate) synthetase" /codon_start=1 /transl_table=11 /product="poly-beta-hydroxybutyrate synthase" /protein_id="YP_004278858.1" /db_xref="GI:325292994" /db_xref="GeneID:10267325" /translation="MAGVDGGAEKKGGKTPGFDATSAEAYLIRDPEAFAVNIARAVEN LGKAASEWLAPRERGEIPQTSADPMTDIVKTLSDVAEYWMAEPKRSLEAQTHLLSSYF DLWTKSVAQFSEDADSRSEKAAETGPAERKNRRFADADWQANPFFDFLLKAYQTTVGF ADRMVMEAEGLDEHTRTKALFYMRQVTEALSPANFVFTNPQVFRETVASSGANLVKGM AQLAEDVAAGHGHLKLRQTDYSKFVIGQNIAITSGKVVAKSPLCEIIHYAPTTKKAFK RPLLIVPPWINKFYILDLNPQKSFVKWCLDQGHSVFMVSWINPDARLADKGWEDYIRE GIDFALDTIEEQTDEKEINAIGYCVGGTLLSSALALHAQEGNERIRSATLLAAQTDFI HAGDLKVFIDEGQLAALDRHMQAVGYLDGSIMATVFNMLRASDLIWPYMVDNYLRGTE PLPFDLLYWNSDSTRVTAACHSFYLRNCYLDNNLARGLMRVADKRINLGDIKIPVYDL ATRDDHIAPAKSVFTGAALFGGPVEFVLGASGHIAGVVNPPQSDKYQYWTGASPSGDF DAWQAAATAYKGSWWVHWQNWIESQNGEKVKARAPGDGKRPVLGDAPGTYVLS" misc_feature 1550554..1552161 /gene="phbC" /locus_tag="AGROH133_06421" /note="poly(R)-hydroxyalkanoic acid synthase, class I; Region: PHA_synth_I; TIGR01838" /db_xref="CDD:130897" misc_feature 1550698..1551216 /gene="phbC" /locus_tag="AGROH133_06421" /note="Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; Region: PhaC_N; pfam07167" /db_xref="CDD:115798" gene 1552198..1552917 /gene="sfsA" /locus_tag="AGROH133_06422" /db_xref="GeneID:10267326" CDS 1552198..1552917 /gene="sfsA" /locus_tag="AGROH133_06422" /note="Regulatory factor involved in maltose metabolism; DNA-binding protein, stimulates sugar fermentation" /codon_start=1 /transl_table=11 /product="sugar fermentation stimulation protein A" /protein_id="YP_004278859.1" /db_xref="GI:325292995" /db_xref="GeneID:10267326" /translation="MLFTPPLVPATLIARYKRFLFDAVLEDGTAITGSCPNTGSMRGL TTPGSRIWLSEHDSPTRKYRHMLEMVEADGTVVGINTGMPNRLTEEAILNGRIPQLAG YSTIRREQKYGRNSRIDFLLSGIGRPDAYVEVKNVHFMREKGLAEFPDTATKRGAKHL EELGDAAEAGHRAVMLYLIQRNDCDQMRICDDLDPVYALAFQRATSRGVEAYAVKCDV SPAQISVTGTVKMDEWRPAVL" misc_feature 1552198..1552899 /gene="sfsA" /locus_tag="AGROH133_06422" /note="Sugar fermentation stimulation protein; Region: SfsA; cl00647" /db_xref="CDD:186125" gene 1552946..1553782 /gene="map" /locus_tag="AGROH133_06423" /db_xref="GeneID:10267327" CDS 1552946..1553782 /gene="map" /locus_tag="AGROH133_06423" /EC_number="3.4.11.18" /note="catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn" /codon_start=1 /transl_table=11 /product="methionine aminopeptidase" /protein_id="YP_004278860.1" /db_xref="GI:325292996" /db_xref="GeneID:10267327" /translation="MMVTYIDAASAPLKNTGVIRLYTPEDFDGMRKACQLTARCLDEL AAIVKPGVTTDAIDRFVFEFGADHGALPATLNYRGYTKSVCTSINHVVCHGIPDAKPL REGEIVNIDVTYILDGWHGDSSRMYPVGTIKRAAERLMEVTYECLMLGIAAVKPGART GAIGAAIQAYAEAERCSVVRDFCGHGVGRLFHDTPNILHYGRPDEGPEIREGMIFTIE PMINLGKPHVKVLSDGWTAVTRDRSLSAQYEHAVGVTATGCEIFTLSPGGFDRPGLPP LA" misc_feature 1552997..1553734 /gene="map" /locus_tag="AGROH133_06423" /note="methionine aminopeptidase; Reviewed; Region: PRK07281" /db_xref="CDD:180918" misc_feature 1553024..1553737 /gene="map" /locus_tag="AGROH133_06423" /note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086" /db_xref="CDD:29971" misc_feature order(1553225..1553227,1553276..1553278,1553309..1553311, 1553498..1553500,1553597..1553599,1553690..1553692) /gene="map" /locus_tag="AGROH133_06423" /note="active site" /db_xref="CDD:29971" gene 1553795..1554640 /gene="radC" /locus_tag="AGROH133_06424" /db_xref="GeneID:10267328" CDS 1553795..1554640 /gene="radC" /locus_tag="AGROH133_06424" /note="Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair proteins" /codon_start=1 /transl_table=11 /product="DNA repair protein RadC" /protein_id="YP_004278861.1" /db_xref="GI:325292997" /db_xref="GeneID:10267328" /translation="MAKRPAPPSADLPSTSGFQAGNGDLFDGTDERGFFAEPRSAVKK TSEHPAAVAEPEAEIAHYHGHRDRLRARYRDGGDTALADYELLELLLFRLIPRRDTKP IAKALIARFGTLGGVLGAPLPLLQEVKGVGEAVALDLKLVASVSQRMLKGEIRNKQIL GSWSSVIDYCHAAMAHETREQFRILFLDKRNVLIADEVQGQGTVDHTPVYPREVVRRA LELSSTALILIHNHPSGDPTPSRADIEMTKTIIDTAKPLGIAVHDHIIIGKDGHASFK GLRLI" misc_feature 1553987..1554637 /gene="radC" /locus_tag="AGROH133_06424" /note="hypothetical protein; Reviewed; Region: PRK00024" /db_xref="CDD:178801" misc_feature 1554284..1554622 /gene="radC" /locus_tag="AGROH133_06424" /note="Mov34/MPN/PAD-1 family; Region: MPN_DUF2466; cd08071" /db_xref="CDD:163702" misc_feature order(1554332..1554334,1554482..1554484,1554488..1554490, 1554512..1554514,1554521..1554523) /gene="radC" /locus_tag="AGROH133_06424" /note="MPN+ (JAMM) motif; other site" /db_xref="CDD:163702" misc_feature order(1554482..1554484,1554488..1554490,1554521..1554523) /gene="radC" /locus_tag="AGROH133_06424" /note="Zinc-binding site [ion binding]; other site" /db_xref="CDD:163702" gene 1554787..1555209 /locus_tag="AGROH133_06425" /db_xref="GeneID:10267329" CDS 1554787..1555209 /locus_tag="AGROH133_06425" /note="TadE-like protein; Flp pilus assembly protein TadG" /codon_start=1 /transl_table=11 /product="TadE family protein" /protein_id="YP_004278862.1" /db_xref="GI:325292998" /db_xref="GeneID:10267329" /translation="MRNGVHFLRDRSGSSAVEFAIVAPIFFLVLLTMIAYGIYLMAAY SVQQIAADAARTAVAGLNTTERQQLARDFVTKSDLSYAFMDKKRFTVNVATDPANANQ FTVKVEYDARDLPIWSLYSYTLPEPVIRRFSTIRIGGA" misc_feature 1554805..1555206 /locus_tag="AGROH133_06425" /note="Flp pilus assembly protein TadG [Intracellular trafficking and secretion]; Region: TadG; COG4961" /db_xref="CDD:34568" misc_feature 1554823..1554951 /locus_tag="AGROH133_06425" /note="TadE-like protein; Region: TadE; pfam07811" /db_xref="CDD:191859" gene 1555211..1556950 /locus_tag="AGROH133_06427" /db_xref="GeneID:10267330" CDS 1555211..1556950 /locus_tag="AGROH133_06427" /note="Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278863.1" /db_xref="GI:325292999" /db_xref="GeneID:10267330" /translation="MQNISSLLPRFLKDSTGNIAISAGLTAPLFIGILALGVDYGYLT LQKRQLQQTADLAAISAAANAADPEKAVQQYFALNGMNLGVKTPNGLLTVDGLQPFDP LNEFAKSNGYAEVVKGHYEPDATLPVGQRFVENALPTNAMKVNIVEKGHIFFASAFTT PPKISAAGTASSQKIAAFSVGSRLASLDEGILNSLLGGLLGTTVSLKVMDYQALVAAD VNALHVVEALAVDLNLTAGTYKDVLKTEITYGKFLDALTKTTGLQPAVANILKTLAKT ANKSNIKLKLEEILNLGPFSDKLIGSGENLKVTAGVFDLLNAAAVAGNGGNQLALNLN ANLLGLASVKTTLAIGEPPVETPSLAVGGQGTVVRTAQTRLAVSVVVDGLQAIAGLKV NIPLYVEVAHAEARLADIRCTGGGQGTVDVEVVPGVAEIALGNVDTTAFANFGKDPRV TKTAIVDSALLAINGSALINATNMTKTKLTFTQSDITQAKIKSVSTKDTVTTLVSSLL KNLNLDIRLLFLNIDLGGLAGIQSALANTLAAVTAPVDQLLYNVLLVLGVKIGEADVR VTDVRCQQPALVQ" misc_feature 1555259..1556947 /locus_tag="AGROH133_06427" /note="Predicted membrane protein [Function unknown]; Region: COG4655" /db_xref="CDD:34274" misc_feature <1555520..1555720 /locus_tag="AGROH133_06427" /note="Predicted membrane protein (DUF2134); Region: DUF2134; pfam09977" /db_xref="CDD:192436" gene complement(1557017..1558393) /gene="dhs" /locus_tag="AGROH133_06429" /db_xref="GeneID:10267331" CDS complement(1557017..1558393) /gene="dhs" /locus_tag="AGROH133_06429" /EC_number="2.5.1.54" /note="Class-II DAHP synthetase family; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxyphosphoheptonate aldolase" /protein_id="YP_004278864.1" /db_xref="GI:325293000" /db_xref="GeneID:10267331" /translation="MAQNWTPGSWRQKPIQQVPEYPDAAALAATEATLATYPPLVFAG EARRLKKQLANVADGNAFLLQGGDCAESFLEHGADNIRDFFRAFLQMAVVLTYGAQLP VVKVGRIAGQFAKPRSSNVEVLDGVTLPSYRGDIINGIEFNETSRVPNPERQLDAYRQ SAATLNLLRAFAMGGYANLENVHQWMLGFIKDSPQADRYRKLADRISETMNFMQAIGI SAENNPSLRETDFFTSHEALLLGYEEALTRVDSTSGDWYATSGHMIWIGDRTRQLDHA HVEYFRGIKNPIGLKCGPSLTPDNLIELIDALNPANEAGRLTLICRFGHDKVADSLPK LIRAVEKEGRKVVWSCDPMHGNTITLNHYKTRPFERILSEVESFFQIHRAEGTHPGGI HIEMTGKDVTECTGGARAVTADSLSDRYHTHCDPRLNADQALELAFLLSERMKSGRDE KRLAIATA" misc_feature complement(1557074..1558384) /gene="dhs" /locus_tag="AGROH133_06429" /note="Class-II DAHP synthetase family; Region: DAHP_synth_2; cl03230" /db_xref="CDD:186558" gene complement(1558644..1560032) /gene="gor" /locus_tag="AGROH133_06430" /db_xref="GeneID:10267332" CDS complement(1558644..1560032) /gene="gor" /locus_tag="AGROH133_06430" /EC_number="1.8.1.7" /note="catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes" /codon_start=1 /transl_table=11 /product="glutathione reductase" /protein_id="YP_004278865.1" /db_xref="GI:325293001" /db_xref="GeneID:10267332" /translation="MTAYDYDLFVIGGGSGGVRSARVAASLGKRVGIAEEYRYGGTCV IRGCVPKKLFVYASQFPEHFEDAEGFGWSVGERRFDWKKLIEAKDREITRLEGLYRKG LDNAKADIFDSRAELVDAHTVKLTKTGETFTAERIVIAVGGTPNEHKALPGHELTISS NEAFDLEELPKSILIAGGGYIAVEFANIFHGLGVETTLIYRGKEILSRFDHDMRKGLH EAMEAKGIRIILEDVIQEVSKDGAGGFVARTKQGNSLHVGLVMLALGRDPNTHGLGLE NAGVKVDARGAIIVDEYSRTNVPGIFALGDVTDRVQLTPVAIHEAMCFIETEYKNNPT KPDHELIATAVFSQPEIGTVGLSEEEAGKKYPELEVYRAQFRPMKATLSGRQEKTIMK LIVNVADRKVVGAHILGHEAGEMAQLLGITLKAGCTKDDFDRTMAVHPTAAEELVTMY SPSYRVVNGERV" misc_feature complement(1558683..1560029) /gene="gor" /locus_tag="AGROH133_06430" /note="glutathione reductase; Validated; Region: PRK06116" /db_xref="CDD:180410" misc_feature complement(1559304..1559519) /gene="gor" /locus_tag="AGROH133_06430" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature complement(1558686..1559012) /gene="gor" /locus_tag="AGROH133_06430" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene complement(1560200..1560766) /locus_tag="AGROH133_06431" /db_xref="GeneID:10267333" CDS complement(1560200..1560766) /locus_tag="AGROH133_06431" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278866.1" /db_xref="GI:325293002" /db_xref="GeneID:10267333" /translation="MIKLAGLGKAAAASILISGIVFGTAARAQEISEAHIAAARQAIA SLGVTDRFDDILPGLAERLKAELIQASPNVQDAITATVDAKALELAPRRADLEREAAL TYARAFSVEELNAISTFYSSEAGKKLLKDGPIATRELMKAADIWAAGINRDLNTSSMT ELQKVAGADLKPLPADQGNTGGAPAHKP" misc_feature complement(1560209..1560706) /locus_tag="AGROH133_06431" /note="Uncharacterized protein conserved in bacteria (DUF2059); Region: DUF2059; cl01243" /db_xref="CDD:194074" gene complement(1560783..1561478) /gene="rpiA" /locus_tag="AGROH133_06433" /db_xref="GeneID:10267334" CDS complement(1560783..1561478) /gene="rpiA" /locus_tag="AGROH133_06433" /EC_number="5.3.1.6" /note="Catalyzes D-ribose 5-phosphate -> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; Ribose 5-phosphate isomerase" /codon_start=1 /transl_table=11 /product="ribose 5-phosphate isomerase A" /protein_id="YP_004278867.1" /db_xref="GI:325293003" /db_xref="GeneID:10267334" /translation="MDARQMKIKAAEAALSHVQDGMRLGIGTGSTAEEFVRLLAEKVA AGLKVEGVPTSERTARLCVELGVPLKSLDELPELDLTIDGADEVDHGLRLVKGGGGAL LREKIVAAASARMIVIADQSKVVEMLGAFPLPIEINPFGQVATQIAIEKLAARSGLSG DLTMRSSGDGAFMTDGGHLILDASFGRIPDAEALARELNTIPGVVEHGLFINLASLAI IAGPEGARVMQAV" misc_feature complement(1560816..1561463) /gene="rpiA" /locus_tag="AGROH133_06433" /note="RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398" /db_xref="CDD:73164" misc_feature complement(order(1560942..1560944,1560954..1560956, 1560960..1560962,1560987..1560992,1561182..1561187, 1561266..1561268,1561272..1561274,1561299..1561304, 1561311..1561313,1561395..1561397)) /gene="rpiA" /locus_tag="AGROH133_06433" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:73164" misc_feature complement(order(1561110..1561112,1561164..1561166, 1561182..1561193,1561221..1561223,1561227..1561232, 1561386..1561391,1561395..1561397)) /gene="rpiA" /locus_tag="AGROH133_06433" /note="active site" /db_xref="CDD:73164" misc_feature complement(order(1560864..1560866,1560879..1560884, 1561038..1561040,1561047..1561055,1561059..1561064, 1561146..1561148,1561167..1561169,1561251..1561253, 1561263..1561265)) /gene="rpiA" /locus_tag="AGROH133_06433" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73164" gene 1561671..1562372 /gene="gph" /locus_tag="AGROH133_06434" /db_xref="GeneID:10267335" CDS 1561671..1562372 /gene="gph" /locus_tag="AGROH133_06434" /EC_number="3.1.3.18" /note="catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; Predicted phosphatases" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="YP_004278868.1" /db_xref="GI:325293004" /db_xref="GeneID:10267335" /translation="MTSRPLSPLAIFDLDGTLVDTAADLVSSLNHTIAAASLAPVTYD DLTHLVGQGARVMIKRAFALRQVDLPEAELEPLYERFIDHYRAEMPGDSRPYPGIVSV LDALSSAGITLAVCTNKTEILAIPLLEKLDLTRYFAAITCGDTFPFRKPDARHILGTI EKAGGDPQRSVMVGDSINDILAAKNASVPSIGVTFGYSDVPMAELEPDVVINDFTALT PALFEQLVAKGAAAA" misc_feature 1561695..>1562087 /gene="gph" /locus_tag="AGROH133_06434" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cl11391" /db_xref="CDD:197437" misc_feature 1561701..1562339 /gene="gph" /locus_tag="AGROH133_06434" /note="Predicted phosphatases [General function prediction only]; Region: Gph; COG0546" /db_xref="CDD:30892" misc_feature 1561917..1562249 /gene="gph" /locus_tag="AGROH133_06434" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature 1562019..1562021 /gene="gph" /locus_tag="AGROH133_06434" /note="motif II; other site" /db_xref="CDD:119389" gene complement(1562608..1564545) /locus_tag="AGROH133_06435" /db_xref="GeneID:10267336" CDS complement(1562608..1564545) /locus_tag="AGROH133_06435" /note="Peptidoglycan binding-like; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278869.1" /db_xref="GI:325293005" /db_xref="GeneID:10267336" /translation="MKLDAPSSLAALGATRIKLQVTSGKTSAALVLALGLSVSTALPG SAGAVTLMDLLRGGPGKVARDRGEMPPAGIVTSPPTVGPSADASDPEPLPRVSGPRYY DYKADTARAVNTANFGEGLANVKFSATPEIGKALEAYYGAGGKALWVSEGELTARANA VMAFLETVGESGLDPADYSISVPAKDVTASISAGANASGTPVEVASASTSDAYQRAQM QFELALSAKVLAYVQDTTRGRVDPNRLSGYHDFKRKTVNLAPVLKLAGLSPDIAAYLR SREPSNAEYLALKAELARLRSEGDAANTVKVPADLVLKPGNSSGDMASVVKAIEHRAS PAFKAEHAAIISGYQQTPDYTPDLVDLVKAFQSENGLKADGVIGRATVRAMVGESNDA RIAKVQVAMEQIRWLPADLGQRYVLINQPAFMAYYHNDGQEQFGMKVVVGSKANQTYF FQDEIQTVEFNPYWGVPQSIIVNEMLPKLRRDPSYLDRLGYEVQVGGRAVSSTSVNWF GSTNAVSVRQPPSSDNALGDLKILFPNAHAIYMHDTPAKSFFNRDMRALSHGCIRLVD PRRMAAAVLGTSVDKVNEQIAAGKNRAVQVPVKIPVYVAYFTAWPDKAGKVQFFDDVY DRDSYVQKAFAVTTKARAASI" misc_feature complement(1562611..1564416) /locus_tag="AGROH133_06435" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2989" /db_xref="CDD:32808" misc_feature complement(1563391..>1563504) /locus_tag="AGROH133_06435" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" misc_feature complement(1562809..>1562931) /locus_tag="AGROH133_06435" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene 1564801..1566345 /gene="fumC" /locus_tag="AGROH133_06437" /db_xref="GeneID:10267337" CDS 1564801..1566345 /gene="fumC" /locus_tag="AGROH133_06437" /EC_number="4.2.1.2" /note="class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; Fumarase" /codon_start=1 /transl_table=11 /product="fumarate hydratase" /protein_id="YP_004278870.1" /db_xref="GI:325293006" /db_xref="GeneID:10267337" /translation="MSAKIALSQGKYLPGMPRNAFIASAMILYIGARKAGEVPFWRRK TSKKARLMTATRTETDTFGPIEVQADRYWGAQAQRSLGNFKIGWEKQPASVVRALGIV KQAAARANMALAGLDNKVGDAIIAAAQEVIDGKLTEHFPLVVWQTGSGTQSNMNANEV ISNRAIEMLGGEMGTKKPVHPNDHVNMSQSSNDTYPTAMHIACVEEIVHHLLPALKHL HTALEAKVKQFEKIIKIGRTHTQDATPLTLGQEFSGYAAQVASAIANIELTLPALSKL AQGGTAVGTGLNAPVGFAEKVAEEISKITGLPFVTAPNKFEALASHDSMVFSHGAINA AAAALFKIANDIRFLGSGPRAGLGELSLPENEPGSSIMPGKVNPTQSEALTQVCAHIF GNNAALSFAGSQGHFELNVYNPMMAYNFLQSVQLLGDAAVSFTDNCVVGIEAREDNIR KGVENSLMLVTALNSKLGYDICAKIAKTAHKNGTTLRDEAVGGGYLTNEEFDQYVRPE NMIGPK" misc_feature 1564954..1566342 /gene="fumC" /locus_tag="AGROH133_06437" /note="fumarate hydratase; Reviewed; Region: fumC; PRK00485" /db_xref="CDD:179045" misc_feature 1564966..1566330 /gene="fumC" /locus_tag="AGROH133_06437" /note="Class II fumarases; Region: Fumarase_classII; cd01362" /db_xref="CDD:176465" misc_feature order(1565245..1565247,1565251..1565253,1565329..1565331, 1565338..1565349,1565368..1565376,1565515..1565517, 1565923..1565925,1565929..1565931,1565944..1565946) /gene="fumC" /locus_tag="AGROH133_06437" /note="active site" /db_xref="CDD:176465" misc_feature order(1565509..1565520,1565530..1565532,1565548..1565553, 1565569..1565571,1565581..1565583,1565593..1565595, 1565647..1565649,1565737..1565742,1565749..1565751, 1565758..1565763,1565767..1565769,1565776..1565781, 1565788..1565790,1565797..1565802,1565809..1565814, 1565818..1565823,1565830..1565835,1565983..1565985, 1566007..1566009,1566016..1566024,1566181..1566183) /gene="fumC" /locus_tag="AGROH133_06437" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176465" gene 1566525..1567457 /locus_tag="AGROH133_06438" /db_xref="GeneID:10267338" CDS 1566525..1567457 /locus_tag="AGROH133_06438" /note="Esterase/lipase" /codon_start=1 /transl_table=11 /product="xylanase" /protein_id="YP_004278871.1" /db_xref="GI:325293007" /db_xref="GeneID:10267338" /translation="MICRRSLLLGGAFLATAMKVPSLFAQGDRQWISLWPGPPPGGGG PNGVPDISKKGAVTNIAVPSLEVFAPAKPNGSAMIIAGGGGYKRIEEGKESYPAARWL AARGIYAFVLTYRLPIEGWAAGPLAPLQDAQRAFRLVRARASDRQIDPHRIGALGFSA GGHLMGLAAARSAFASYEAVDDIDRQSARPDVAALIYPVITLAAPYDHTSTRRSLIGR HPTEEATREWSVESHVSKDCPPVFLTQADDDRISNPANSRIMQQACDKADVDVEFHPI ISGGHGFGMGKPGTPTQEWPGWYEAWLRKHNLLA" misc_feature <1566939..1567385 /locus_tag="AGROH133_06438" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(1567524..1569152) /gene="pyrG" /locus_tag="AGROH133_06440" /db_xref="GeneID:10267339" CDS complement(1567524..1569152) /gene="pyrG" /locus_tag="AGROH133_06440" /EC_number="6.3.4.2" /note="CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthase (UTP-ammonia lyase)" /codon_start=1 /transl_table=11 /product="CTP synthase" /protein_id="YP_004278872.1" /db_xref="GI:325293008" /db_xref="GeneID:10267339" /translation="MARYVFITGGVVSSLGKGIAAAALGALLQSRGYRVRLRKLDPYL NVDPGTMSPTQHGEVFVTDDGAETDLDLGHYERFTGRSATKTDNITTGRIYKNIIDKE RRGDYLGATVQVIPHVTNEIKDFVTEGNDDYDFVICEIGGTVGDIEAMPFMEAIRQLG NDLPRGTAIYVHLTLMPYIPAAGELKTKPTQHSVKELQALGIHPDILLVRADREIPEA ERRKLSLFCNVRPSAVIQALDVANIYDVPIAYHNEGLDSEVLAAFGIEPAPKPRLEQW EEVCNRIRTPEGEVTIAIVGKYTGLKDAYKSLIEALHHGGFANRVKVKLEWIESEVFE KEDPTPYLEKVNGILVPGGFGERGSEGKIMAAQFARERNVPYFGICFGMQMAVVEAAR HLAGIENASSTEFGPTAEPVVGLMTEWVKGNELEKRSTKGDLGGTMRLGAYKAALKKD TKIAEIYGSTDISERHRHRYEVNVDYKDRLEECGLVFSGMSPDGVLPETVEYPDHPWF IGVQYHPELKSRPLDPHPLFASFVEAAVEQSRLV" misc_feature complement(1567527..1569152) /gene="pyrG" /locus_tag="AGROH133_06440" /note="CTP synthetase; Validated; Region: pyrG; PRK05380" /db_xref="CDD:180047" misc_feature complement(1568388..1569146) /gene="pyrG" /locus_tag="AGROH133_06440" /note="CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer...; Region: CTGs; cd03113" /db_xref="CDD:48377" misc_feature complement(order(1568730..1568732,1568736..1568738, 1568928..1568933,1568940..1568942,1568946..1568948, 1569024..1569032,1569036..1569038,1569096..1569107, 1569114..1569116)) /gene="pyrG" /locus_tag="AGROH133_06440" /note="Catalytic site [active]" /db_xref="CDD:48377" misc_feature complement(order(1568487..1568489,1568589..1568597, 1568727..1568729,1569036..1569038,1569099..1569113)) /gene="pyrG" /locus_tag="AGROH133_06440" /note="Active site [active]" /db_xref="CDD:48377" misc_feature complement(order(1568487..1568489,1568589..1568597, 1568709..1568711,1568727..1568732,1569024..1569038)) /gene="pyrG" /locus_tag="AGROH133_06440" /note="UTP binding site [chemical binding]; other site" /db_xref="CDD:48377" misc_feature complement(1567557..1568285) /gene="pyrG" /locus_tag="AGROH133_06440" /note="Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746" /db_xref="CDD:153217" misc_feature complement(order(1567605..1567607,1567611..1567613, 1567743..1567754,1567941..1567943,1568001..1568003, 1568010..1568015,1568088..1568102)) /gene="pyrG" /locus_tag="AGROH133_06440" /note="active site" /db_xref="CDD:153217" misc_feature complement(order(1568010..1568012,1568094..1568096)) /gene="pyrG" /locus_tag="AGROH133_06440" /note="putative oxyanion hole; other site" /db_xref="CDD:153217" misc_feature complement(order(1567605..1567607,1567611..1567613, 1568013..1568015)) /gene="pyrG" /locus_tag="AGROH133_06440" /note="catalytic triad [active]" /db_xref="CDD:153217" gene complement(1569312..1569785) /gene="secG" /locus_tag="AGROH133_06442" /db_xref="GeneID:10267340" CDS complement(1569312..1569785) /gene="secG" /locus_tag="AGROH133_06442" /note="Preprotein translocase SecG subunit; Preprotein translocase subunit SecG" /codon_start=1 /transl_table=11 /product="Protein-export membrane protein secG" /protein_id="YP_004278873.1" /db_xref="GI:325293009" /db_xref="GeneID:10267340" /translation="MEWIVMQTVLIVIHLMIVLALVGVVLIQRSEGGGLGIGGGSGFM SARGTANALTRTTGILAALFFVTSLGLGLLTRYESRPTDILNRIPATQGQGNGILDTL GPAQTPATPAPAENGVPTNSGAAAPAQTAPAPATAGEAAPAPAKPADPNTVPTGQ" misc_feature complement(1569555..1569770) /gene="secG" /locus_tag="AGROH133_06442" /note="Preprotein translocase SecG subunit; Region: SecG; cl09123" /db_xref="CDD:195798" gene complement(1569886..1570656) /gene="tpiA" /locus_tag="AGROH133_06445" /db_xref="GeneID:10267341" CDS complement(1569886..1570656) /gene="tpiA" /locus_tag="AGROH133_06445" /EC_number="5.3.1.1" /codon_start=1 /transl_table=11 /product="Triosephosphate isomerase" /protein_id="YP_004278874.1" /db_xref="GI:325293010" /db_xref="GeneID:10267341" /translation="MTPNVRPLVAGNWKMNGTRSSLDQIKAMAEGVKGALSEKVDALI CPPSTLLYVATALCDDSPLMIGGQDCHQNVSGAHTGDISAEMIADCFGTHVIVGHSER RTDHAETDHLVRAKAVAAHQADLIAIVCIGETADERKAGQTLDILKRQLAGSLPDEAT AENTVIAYEPVWAIGTGLTPTTQDVREAHAFMRDELVKRFGDEGKTMRILYGGSVKPA NALELMGVENVDGALIGGASLKASDFLSIYAAYEQLTA" misc_feature complement(1569916..1570638) /gene="tpiA" /locus_tag="AGROH133_06445" /note="Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311" /db_xref="CDD:73362" misc_feature complement(order(1569949..1569954,1569958..1569960, 1570015..1570017,1570132..1570134,1570150..1570152, 1570360..1570362,1570615..1570617,1570621..1570623)) /gene="tpiA" /locus_tag="AGROH133_06445" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73362" misc_feature complement(order(1570351..1570356,1570387..1570392, 1570399..1570401,1570453..1570455,1570492..1570494, 1570501..1570503,1570507..1570515,1570612..1570614, 1570621..1570623)) /gene="tpiA" /locus_tag="AGROH133_06445" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:73362" misc_feature complement(order(1570150..1570152,1570360..1570362, 1570615..1570617)) /gene="tpiA" /locus_tag="AGROH133_06445" /note="catalytic triad [active]" /db_xref="CDD:73362" gene complement(1570871..1571752) /locus_tag="AGROH133_06446" /db_xref="GeneID:10267342" CDS complement(1570871..1571752) /locus_tag="AGROH133_06446" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278875.1" /db_xref="GI:325293011" /db_xref="GeneID:10267342" /translation="MSTAHFTFCTLFCLTVAAMPGGAGAADGPLRPFKDELFSSQTVL STADGGASEVIDYQEMRDINGRDEVPERRVKRQYVDMAPKTAQAMESVAVEGRALEVG RVGPSSGQAFTVIFIHGRGGDRRLGMNDYTFGGNFNRLKNLAVANGGTYYVPSVRSFD ANGVADVSALIAYAASKSGGKPVVLACASMGSFICYGISRDKATVGNLKGMAILGGAV DPDFPKSAFAKAKKPVWFTHGSADKVYSADSQATIFRTLLKAGEPARFTLFETGTHGT PVRMTDWRAVLNWILSR" misc_feature complement(1570928..1571416) /locus_tag="AGROH133_06446" /note="Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695" /db_xref="CDD:193171" gene 1571962..1574082 /gene="gyrB" /locus_tag="AGROH133_06448" /db_xref="GeneID:10267343" CDS 1571962..1574082 /gene="gyrB" /locus_tag="AGROH133_06448" /EC_number="5.99.1.3" /note="decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit B" /protein_id="YP_004278876.1" /db_xref="GI:325293012" /db_xref="GeneID:10267343" /translation="MMDDSNDLFSGLPVAPNSETEKNEDTAKPVKAPVSAAANVNVQP KPAAVAAVTTPPPPAPVSPSGDDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLF AEVIDNSMDEAVAGHANFIEVHLDTEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTK LHAGGKFDGKAYETSGGLHGVGVSVVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLE ELGDVHNRRGTRVRFHPDPQIFGDHAKFEPARIFRMARSKAYLFGGVEIRWSCDPGMV PAGGEIPEKAVFHFPGGLKDYLAATLGKEFTVTREIFSGRTEKTGGHGALEWAVTWYG GDTQIHSYCNTIPTPEGGTHEAGFRIALTKGLKNYAELTQNKRAREITTDDVMISAAG MLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLTGNPGEAAKLLDWVIERA EERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAENAELFIVEGDSAGGSAKQARNR ANQAILPLRGKILNVGSASREKLSANQQIADLIQALGCGTRTKYREEDLRYERIIIMT DADVDGAHIASLLITFFYQEMPELIRGNHLYLAVPPLYVIRQGAKSAYARDDAHRAEL METVFKGKKVEIGRFKGLGEMMAAQLKETTMDPEKRTLLRVEIDDVDFEGTREAVDNL MGTKADARFRFIQERAAFADNLDI" misc_feature 1572157..1574073 /gene="gyrB" /locus_tag="AGROH133_06448" /note="DNA topoisomerase IV subunit B; Reviewed; Region: PRK05559" /db_xref="CDD:180127" misc_feature 1572238..1572675 /gene="gyrB" /locus_tag="AGROH133_06448" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075" /db_xref="CDD:193644" misc_feature 1572835..1573302 /gene="gyrB" /locus_tag="AGROH133_06448" /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are...; Region: TopoII_Trans_DNA_gyrase; cd00822" /db_xref="CDD:48467" misc_feature 1572991..1572993 /gene="gyrB" /locus_tag="AGROH133_06448" /note="anchoring element; other site" /db_xref="CDD:48467" misc_feature order(1573159..1573161,1573168..1573173,1573177..1573179) /gene="gyrB" /locus_tag="AGROH133_06448" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48467" misc_feature order(1573177..1573179,1573183..1573185) /gene="gyrB" /locus_tag="AGROH133_06448" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:48467" misc_feature 1573423..1573764 /gene="gyrB" /locus_tag="AGROH133_06448" /note="Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from...; Region: TOPRIM; cl00718" /db_xref="CDD:193916" misc_feature order(1573441..1573446,1573453..1573455,1573660..1573662, 1573666..1573668,1573672..1573674) /gene="gyrB" /locus_tag="AGROH133_06448" /note="active site" /db_xref="CDD:173773" misc_feature order(1573441..1573443,1573660..1573662) /gene="gyrB" /locus_tag="AGROH133_06448" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173773" misc_feature 1573846..1574046 /gene="gyrB" /locus_tag="AGROH133_06448" /note="DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986" /db_xref="CDD:189792" gene complement(1574126..1574737) /gene="clpP" /locus_tag="AGROH133_06449" /db_xref="GeneID:10267344" CDS complement(1574126..1574737) /gene="clpP" /locus_tag="AGROH133_06449" /EC_number="3.4.21.92" /note="ATP-dependent Clp protease, proteolytic subunit ClpP; Protease subunit of ATP-dependent Clp proteases" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease, proteolytic subunit" /protein_id="YP_004278877.1" /db_xref="GI:325293013" /db_xref="GeneID:10267344" /translation="MREAMQLVPMVVEQSARGERSFDIYSRLLRERIIFLNGEVNDAV SALVCAQLLFLEAENPKKPIHLYINSPGGVVTSGLAMYDTMRYIRAPVHTLCMGTARS MGSFLLMAGEPGARAALPNASILIHQPSGGFQGQASDMLIHAEEIRQTKHRMTRLYAE HCKRSYDEFEAAMDRDRFMTVEEALEWGLIDRVLDVREDVAAA" misc_feature complement(1574159..1574671) /gene="clpP" /locus_tag="AGROH133_06449" /note="Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017" /db_xref="CDD:132928" misc_feature complement(order(1574204..1574206,1574210..1574212, 1574279..1574281,1574285..1574287,1574291..1574293, 1574300..1574302,1574342..1574353,1574369..1574371, 1574375..1574377,1574441..1574443,1574465..1574467, 1574477..1574482,1574489..1574491,1574498..1574500, 1574510..1574512,1574531..1574533,1574576..1574578, 1574585..1574590,1574597..1574602,1574627..1574629, 1574633..1574635)) /gene="clpP" /locus_tag="AGROH133_06449" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132928" misc_feature complement(order(1574210..1574212,1574357..1574359, 1574432..1574434)) /gene="clpP" /locus_tag="AGROH133_06449" /note="active site residues [active]" /db_xref="CDD:132928" gene complement(1574781..1574954) /locus_tag="AGROH133_06450" /db_xref="GeneID:10267345" CDS complement(1574781..1574954) /locus_tag="AGROH133_06450" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278878.1" /db_xref="GI:325293014" /db_xref="GeneID:10267345" /translation="MRDDVPPFLESTVTFSIAPNASGGTSLRVIHELPITGSGRMTKA AANHNRSPIKLAA" gene complement(1575135..1575482) /locus_tag="AGROH133_06451" /db_xref="GeneID:10267346" CDS complement(1575135..1575482) /locus_tag="AGROH133_06451" /note="Bacterial regulatory protein, ArsR; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_004278879.1" /db_xref="GI:325293015" /db_xref="GeneID:10267346" /translation="MNHISLCLSVVMTENDIFRALADPTRRAIFEKLADGAQNASALR EGIDISQPAMSQHLAVLRGAGLVVERRQGRFVNYEVDPDGLTRIATWLGKYRAYWPQR VEALKLLLKDMDQ" misc_feature complement(1575234..1575431) /locus_tag="AGROH133_06451" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature complement(order(1575288..1575290,1575378..1575380, 1575387..1575392,1575399..1575404,1575411..1575413, 1575420..1575422,1575426..1575431)) /locus_tag="AGROH133_06451" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(1575249..1575257,1575270..1575278, 1575294..1575299,1575303..1575308,1575315..1575320, 1575324..1575335,1575360..1575368,1575405..1575413, 1575423..1575428)) /locus_tag="AGROH133_06451" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(1575357..1575359,1575366..1575368)) /locus_tag="AGROH133_06451" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene 1575616..1577172 /locus_tag="AGROH133_06452" /db_xref="GeneID:10267347" CDS 1575616..1577172 /locus_tag="AGROH133_06452" /note="Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases and related enzymes" /codon_start=1 /transl_table=11 /product="phospholipase D/Transphosphatidylase" /protein_id="YP_004278880.1" /db_xref="GI:325293016" /db_xref="GeneID:10267347" /translation="MTAFTVFIAMVLLVVGPALFVVISKQREKAIPKRPSTALPVAED ATGLDRHWQSIRNGWNEKNALCLLHSNLDAFAVRMAAARAAGRSLDLMYYMWNADLTG RLMMREVIAAADRGVRVRLLLDDLGVSMSDRIFHAIDSHPNIELRLFNPTRARENILY RSLELVLRFRSVNRRMHNKAWIADGRAAIVGGRNIGDAYFDAAERANFHDFDILGFGR IVADATEIFDDYWNSAVSVPVRSLLARRPSKLARLRRELAALPKSEAAKPYLERVENQ YGSGHFLMSDRLHWVDEADVLADPPEKAAGKRRNGHNFLMESLLPLMQEANDSLHITS PYFIPGKQGLDIFANLAERGVSVAILTNSLAATDVAAVHAGYARYRKPLLLGGVRLHE LRAKADQPSFTLRGSGQASLHTKAFSRDGKTGYIGSLNFDPRSASLNTEMGVVFTSAP LVARMDEIFSEEIRRSMSFELDIDNGNRIVWMTEEHGQPKTYRREPDAAISRRIVAGI MRFLPLESQL" misc_feature 1575631..1577031 /locus_tag="AGROH133_06452" /note="Phosphatidylserine/phosphatidylglycerophosphate/car diolipin synthases and related enzymes [Lipid metabolism]; Region: Cls; COG1502" /db_xref="CDD:31691" misc_feature 1575817..1576311 /locus_tag="AGROH133_06452" /note="Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111" /db_xref="CDD:197210" misc_feature order(1576144..1576146,1576150..1576152,1576189..1576191, 1576195..1576197,1576243..1576245) /locus_tag="AGROH133_06452" /note="putative active site [active]" /db_xref="CDD:197210" misc_feature 1576144..1576146 /locus_tag="AGROH133_06452" /note="catalytic site [active]" /db_xref="CDD:197210" misc_feature 1576504..1577157 /locus_tag="AGROH133_06452" /note="Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_2; cd09113" /db_xref="CDD:197212" misc_feature order(1576852..1576854,1576858..1576860,1576897..1576899, 1576903..1576905,1576936..1576938) /locus_tag="AGROH133_06452" /note="putative active site [active]" /db_xref="CDD:197212" misc_feature 1576852..1576854 /locus_tag="AGROH133_06452" /note="catalytic site [active]" /db_xref="CDD:197212" gene complement(1577204..1578037) /gene="rrpX" /locus_tag="AGROH133_06454" /db_xref="GeneID:10267348" CDS complement(1577204..1578037) /gene="rrpX" /locus_tag="AGROH133_06454" /note="Response regulator receiver domain; Response regulator containing a CheY-like receiver domain and a GGDEF domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004278881.1" /db_xref="GI:325293017" /db_xref="GeneID:10267348" /translation="MNFLGITGMQYSGVPFTNCRILLAEDTNVFTQMVSMRLKELLGV SVEVCRNFEELQACYEHSAEPVTLAISNINLPGAENGEALEYLIDLSIPTIVFTSTFH EATRETLIAKNVVDYILKDNIFAVDMLTESICRFLTNHRHHVLIVDDSPTARALLSSR LKRYNFRVSLADSGAKALEILKANPDIGLVVTDYNMPDIDGFELTRRIRTVRGSHELR IIGVSSSTNRLLSARFLKAGGNDFMLRPFIDEEFYCRVNQNLDTLVQIQLAKAGVRPA A" misc_feature complement(1577612..1577986) /gene="rrpX" /locus_tag="AGROH133_06454" /note="FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784" /db_xref="CDD:31127" misc_feature complement(1577627..1577974) /gene="rrpX" /locus_tag="AGROH133_06454" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cl09944" /db_xref="CDD:189206" misc_feature complement(order(1577675..1577680,1577687..1577689, 1577744..1577746,1577798..1577800,1577822..1577824, 1577960..1577965)) /gene="rrpX" /locus_tag="AGROH133_06454" /note="active site" /db_xref="CDD:29071" misc_feature complement(1577822..1577824) /gene="rrpX" /locus_tag="AGROH133_06454" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1577798..1577806,1577810..1577815)) /gene="rrpX" /locus_tag="AGROH133_06454" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(order(1577666..1577668,1577675..1577680)) /gene="rrpX" /locus_tag="AGROH133_06454" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(1577267..1577608) /gene="rrpX" /locus_tag="AGROH133_06454" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(1577258..1577605) /gene="rrpX" /locus_tag="AGROH133_06454" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(1577300..1577305,1577312..1577314, 1577369..1577371,1577435..1577437,1577459..1577461, 1577591..1577596)) /gene="rrpX" /locus_tag="AGROH133_06454" /note="active site" /db_xref="CDD:29071" misc_feature complement(1577459..1577461) /gene="rrpX" /locus_tag="AGROH133_06454" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(1577435..1577443,1577447..1577452)) /gene="rrpX" /locus_tag="AGROH133_06454" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(1577297..1577305) /gene="rrpX" /locus_tag="AGROH133_06454" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(1578200..1580713) /locus_tag="AGROH133_06455" /db_xref="GeneID:10267349" CDS complement(1578200..1580713) /locus_tag="AGROH133_06455" /EC_number="1.5.99.2" /note="FAD dependent oxidoreductase; glycine cleavage system T protein (aminomethyltransferase)" /codon_start=1 /transl_table=11 /product="dimethylglycine dehydrogenase" /protein_id="YP_004278882.1" /db_xref="GI:325293018" /db_xref="GeneID:10267349" /translation="MKTHARAVVIGGGVVGVSTLYHLAKKGWSDSVLIERKELTSGST WHAAGLLPLFNMSYSVGQIHKYSVKFYEELQEETGMNVGFSKVSNIRLARTKDRWDEY MYYAGIAETIGVRVNMLTPEQVKEIWPLCETDGLLGAIQHPDDGYIQPADLTQALAKG ARDRGATIYRNTTVTAIEQLEDGHWKVTTDKGEIIAEHIISCTGSFARKTGEMVGINI PVIPVEHQYIVTEPHPAILERRRQGLPEMGVLRESDSAWYMREEAGGLILGPYEVGAP VCYVDGPSDDSEYELFQEELDRLMPHIETAMVRVPAFGEVGIKKVYNGAIAYTPDGNP IVGPAPGLKNFWLNEGHSFGITAAGGAGWQLAEWIVDGEPTLDLMGVDPRRFGPHATE GYLIAKNEEAYANVFTMHYPDEERSAARPLKTTPVYDRLKKLGGVFGSVYGWERANWY APEGYALREEDLGVGADVITSHNYAPPLDDGRIVEKWSFRRSNYFEHVGNEVKNVTQN VGVLDMSAFAKMEVSGPGARAWLDSILANIVPKKRGRIALTHLLTPNGGVKVEFTVYE WAPGRFYLVSAGGLEAHDHDVLQRLAPTDGSVVLQPITQKYGVLVLAGPKSRDLLKKL TRTSLENKDFPWLTAKQISVGVATAHALRVNFVGELGWELHHPIEMQNYIFDRLMEAG AEFGIKPFGIRAMVSMSLEKSYRNMGRELSVEYNAYESGLDRFLRPEKNFIGRDALVA YKEAGLKSVFSTLTVSGNTDVDARGSEAIFDADGALAGRVTSGGFGWRIGKSIALAML KPEYATIGTKLKIRILGTLYDAEVVEESPFDTENALLRA" misc_feature complement(1579541..1580713) /locus_tag="AGROH133_06455" /note="Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:31009" misc_feature complement(1579550..>1580389) /locus_tag="AGROH133_06455" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" misc_feature complement(1578203..1579462) /locus_tag="AGROH133_06455" /note="Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]; Region: GcvT; COG0404" /db_xref="CDD:30753" misc_feature complement(1578656..>1579054) /locus_tag="AGROH133_06455" /note="Sarcosine oxidase, gamma subunit family; Region: SoxG; cl01893" /db_xref="CDD:164003" misc_feature complement(1578242..1578526) /locus_tag="AGROH133_06455" /note="Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669" /db_xref="CDD:192119" gene 1581106..1581708 /locus_tag="AGROH133_06457" /db_xref="GeneID:10267350" CDS 1581106..1581708 /locus_tag="AGROH133_06457" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278883.1" /db_xref="GI:325293019" /db_xref="GeneID:10267350" /translation="MYPAAATGRRWWRRKNAATIILAARWNTINAIIVELRNISTRRR ANHILRICQKRKKHTEEKNSQSHFATSCEDAQILARSFTSLPAAAFAAASSHAGVLLR IPMETLLKPMTSGLANWLSEKRPELFVLRMVLSLPAMFSAAGCWPCGPVVAATSAPST VFWTSPLFPPGVSSATMQIGREDNSPRPSTPVSAASPQPR" gene complement(1581716..1584370) /gene="kefA" /locus_tag="AGROH133_06459" /db_xref="GeneID:10267351" CDS complement(1581716..1584370) /gene="kefA" /locus_tag="AGROH133_06459" /note="MscS Mechanosensitive ion channel; Small-conductance mechanosensitive channel" /codon_start=1 /transl_table=11 /product="Potassium efflux system kefA" /protein_id="YP_004278884.1" /db_xref="GI:325293020" /db_xref="GeneID:10267351" /translation="MKGMDVRLMFGGMIDGRRMFGGPLSGRRRKAAMAAIMVAVFTLL GSFLSSATLASAQDAPAAAPVAIQASIVEQARTDLEKWKADISAIAKQVEAGGSDDVQ LVDLKGRADTIAADAAAANTKLRTRLDQIKTRLDALGAAPAEGQPPEASMVTEERSRL TAERAEVNAIAGEVESTATNAAQISNNITAVRRALFAATLFKRTEVSSQTLGDASSAF VSELTNLNNAFSSWAGFVWNYKRLPMFGAVMLSIMAALLFLVGGYRFFGSRMERRAFS GEPSYLRRLSVAFWSTMVQSLSLFLFLVTSAFFLDNFNVLRSDIAPILFGAMAVTGFV YFVSRLSYAIFAPTQPEWRLLQVSNRGAHTLSSAVLLMALVNGLDYLFGTISETLYSP LIVTVAKSFIASIIIGIILLTVSFLRPVIGEGQDYETGNQRLPRWLVILLRVGGLVLI GACLTGYVGLARFLATQIVATGAVLATMYIGILSGKAISRQGAFSESLAGRYLGRRYG LGPVALDQAGLAAGLGIYVIALAFGVPLILFSWGFQPGDIESWAYRLLTGITVGNASI SLIGLFGGVLVFAIGYIITRWFQKWLDNNVMARGQVDAGVRNSVKTGIGYLGIAVAAI FGVSSAGLNLSSLALVASALSVGIGFGLQNIVSNFVSGLILLVERPFKVGDWVVTGTT EGTVKRLSVRATEIETFRGQSIIVPNSEFINSSVGNWTHRNRIMRAEIPVSVAYESDP QQVMDILLELVRTQPPVLRNPEPHVEFLRFGDFSLDFELRFHLADLSNGLGVKNALRI AILKRFREEGIAIPFPQRNLNIHVEGDANPQMLAALLSEEGDKAVAAHTGAAAPAAAT APEKDAGKAGDKTVVEPKATLKAAGKDS" misc_feature complement(1581857..1584154) /gene="kefA" /locus_tag="AGROH133_06459" /note="Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: COG3264" /db_xref="CDD:33075" misc_feature complement(1581935..1582525) /gene="kefA" /locus_tag="AGROH133_06459" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:144501" gene 1584509..1584763 /locus_tag="AGROH133_06473" /db_xref="GeneID:10267352" CDS 1584509..1584763 /locus_tag="AGROH133_06473" /note="Transglycosylase-associated protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278885.1" /db_xref="GI:325293021" /db_xref="GeneID:10267352" /translation="MESAGIGWIAAIIIGGVAGWLAEQFMKSNMGVFMNILLGIVGAI VANAILSVFGIVLTGWIGYLIAGFIGACILIVIGRAFRRG" misc_feature 1584614..1584757 /locus_tag="AGROH133_06473" /note="Transglycosylase associated protein; Region: Transgly_assoc; cl00978" /db_xref="CDD:186289" gene 1584919..1584994 /locus_tag="AGROH133_06477" /db_xref="GeneID:10267353" tRNA 1584919..1584994 /locus_tag="AGROH133_06477" /product="tRNA-Lys" /anticodon=(pos:1584952..1584954,aa:Lys) /db_xref="GeneID:10267353" gene complement(1585129..1585626) /locus_tag="AGROH133_06478" /db_xref="GeneID:10267354" CDS complement(1585129..1585626) /locus_tag="AGROH133_06478" /note="Uncharacterised conserved protein UCP034077" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278886.1" /db_xref="GI:325293022" /db_xref="GeneID:10267354" /translation="MTLIGGWARLIAFRQRIMDLIKRSFSFFCGLKLPGIVALATLYA GFLTQALGQSRVCNDPAPVSNLKEMFDAIYACWMPPEDTEGLVVTLQFILHKDGQIRG KVVVTAARPQEDSPRRQAFIDSAIDAVRRATPVPFTEEFASRIAGRPLGPRFIGTKII PETKL" gene 1586014..1586346 /locus_tag="AGROH133_06480" /db_xref="GeneID:10267355" CDS 1586014..1586346 /locus_tag="AGROH133_06480" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278887.1" /db_xref="GI:325293023" /db_xref="GeneID:10267355" /translation="MTSKWVTAVFFGATLTVAGAAQADDLVFSLKNGTNSVLNAFYTS PVGVDDWEDDVFGKKALGPGETMEITIADGRRVCKYDMRFEFQGDELEDLEDTQNLCE LGEYTITE" gene 1586510..1586767 /locus_tag="AGROH133_06482" /db_xref="GeneID:10267356" CDS 1586510..1586767 /locus_tag="AGROH133_06482" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278888.1" /db_xref="GI:325293024" /db_xref="GeneID:10267356" /translation="MPMIGVMRLIVNILLFALGAVGSGVCAFLLSGTLADSGFLGSCF EGSCAYAALFMVLPVTWFVLFALYVMALLVWRRKPFRNGRL" gene 1586963..1587187 /locus_tag="AGROH133_06486" /db_xref="GeneID:10267357" CDS 1586963..1587187 /locus_tag="AGROH133_06486" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278889.1" /db_xref="GI:325293025" /db_xref="GeneID:10267357" /translation="MRAAINSPSLSIDTMDYQAECQFALEPSIQGLIEKAEDAGWNRQ QAALAIVALASEHLSDLLPGLTAPDQRPLS" gene 1587484..1587672 /locus_tag="AGROH133_06487" /db_xref="GeneID:10267358" CDS 1587484..1587672 /locus_tag="AGROH133_06487" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278890.1" /db_xref="GI:325293026" /db_xref="GeneID:10267358" /translation="MNAADATIENALSVVARSRDMRERALERRRELQRRTEVIIARPL YVLKKNEGPKQLSLKLDS" gene complement(1587746..1587997) /locus_tag="AGROH133_06488" /db_xref="GeneID:10267359" CDS complement(1587746..1587997) /locus_tag="AGROH133_06488" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278891.1" /db_xref="GI:325293027" /db_xref="GeneID:10267359" /translation="MKSVLIIAAVLGFSASAALAECAGHEKINASVPAVDREFKTASI VPPTDPVDKPIVILKKTDRLPAATVATTGEPEAAMQRMQ" gene complement(1588137..1588517) /locus_tag="AGROH133_06490" /db_xref="GeneID:10267360" CDS complement(1588137..1588517) /locus_tag="AGROH133_06490" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278892.1" /db_xref="GI:325293028" /db_xref="GeneID:10267360" /translation="MVGFGSALLSGSGMRWRGRSYAARLRLRRTIPATISPAWRRSTR RHLIFSIVLRFAAAEQDRCFLVIAHGRRRAMQHNSPDGRTIKAANAAQATTYKPSLIS LKGSYVAMIFRRPLCQNPLDLRKK" gene 1588630..1589064 /locus_tag="AGROH133_06491" /db_xref="GeneID:10267361" CDS 1588630..1589064 /locus_tag="AGROH133_06491" /note="Bacterial Transmembrane Pair family; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278893.1" /db_xref="GI:325293029" /db_xref="GeneID:10267361" /translation="MRSLPDRIRHALSFEIIGLLLVVPLGAFVFHMPMEDIGIVGLVS ATLATAWNYLYNLGFDHAMQRLKGTTLKTPAIRVAHALLFELGLLIVLMPFIAWYLSI SLAQALVMDISFALFYVVYAFVFNWGYDRLFPLPEWQSQDAV" misc_feature 1588630..1589052 /locus_tag="AGROH133_06491" /note="Predicted membrane protein [Function unknown]; Region: COG4125" /db_xref="CDD:33882" misc_feature 1588633..1588836 /locus_tag="AGROH133_06491" /note="Bacterial Transmembrane Pair family; Region: BTP; pfam05232" /db_xref="CDD:191238" misc_feature 1588843..1589046 /locus_tag="AGROH133_06491" /note="Bacterial Transmembrane Pair family; Region: BTP; pfam05232" /db_xref="CDD:191238" gene complement(1589089..1590057) /locus_tag="AGROH133_06496" /db_xref="GeneID:10267362" CDS complement(1589089..1590057) /locus_tag="AGROH133_06496" /EC_number="3.1.-.-" /note="Predicted dienelactone hydrolase" /codon_start=1 /transl_table=11 /product="dienelactone hydrolase" /protein_id="YP_004278894.1" /db_xref="GI:325293030" /db_xref="GeneID:10267362" /translation="MRFLVLLCLSLVSAMCGTGTVLAAGLRLIEITSAGGKPSMRAAV WSPCAATPVETRIGPFALQAVRDCPVVDGQYPLVIISHGFGGTYLSHRDTAAALADAG FIVAAINHPGDNAIDMKRAGDLSALTERPADIVRLLDHMLANWNDARFIDAGRIGVFG FSRGGYTALVLAGGVPDFPNTGLPCPDGQAAVCAQMLERSASPEDRVYDARVKAVVVA DPLNAFPGRADLRDIKIPVQLWSSERGGDGVAPEDILGLRDDLPAKPDYQTVKGAGHF SFITPCPAEMEKALAEICGDIPGFDRAEFHRRLNSEVIRFFTASLR" misc_feature complement(1589092..1589850) /locus_tag="AGROH133_06496" /note="Predicted dienelactone hydrolase [General function prediction only]; Region: COG4188" /db_xref="CDD:33923" misc_feature complement(<1589710..>1589841) /locus_tag="AGROH133_06496" /note="Chlorophyllase enzyme; Region: Chlorophyllase2; cl14889" /db_xref="CDD:196850" misc_feature complement(<1589524..1589766) /locus_tag="AGROH133_06496" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(1590160..1590765) /locus_tag="AGROH133_06499" /db_xref="GeneID:10267363" CDS complement(1590160..1590765) /locus_tag="AGROH133_06499" /note="Protein of unknown function DUF330; ABC-type uncharacterized transport system, auxiliary component" /codon_start=1 /transl_table=11 /product="ABC transporter" /protein_id="YP_004278895.1" /db_xref="GI:325293031" /db_xref="GeneID:10267363" /translation="MTRLMNGHKRRALLLVPLLAVAVAGCAGTPSNDTFDLSVSSATV TQGPSLKGRQLLIADPTALKALDSENIVVRLSGSEVQYLGNSQWSDRLPRMVQSKLVQ AFEDTGKLGGVGRPGQGLAIDYQVVSDIRTFEIDTAKNTADIEISVKLLNDRNGTVKA QEVFRASARVSGSGNANFVKALDQAFAAATREIVAWTLKSL" misc_feature complement(1590163..1590693) /locus_tag="AGROH133_06499" /note="Protein of unknown function (DUF330); Region: DUF330; cl01135" /db_xref="CDD:194047" gene complement(1590781..1592151) /locus_tag="AGROH133_06502" /db_xref="GeneID:10267364" CDS complement(1590781..1592151) /locus_tag="AGROH133_06502" /note="Mammalian cell entry related; ABC-type transport system involved in resistance to organic solvents, periplasmic component" /codon_start=1 /transl_table=11 /product="ABC transporter substrate-binding protein" /protein_id="YP_004278896.1" /db_xref="GI:325293032" /db_xref="GeneID:10267364" /translation="METKANYTIVGIFTLIVIAAAFGFVYWMAEFGRGGPTAQLVVRI PGSANGLSVGSPVRFNGIPVGTVRGLAIDRDDPAYSIAFTEVQADAPVFPSTRAVLEI QGLTGAAYIELSGGNKDGERILQKSVESGVPAELTADLSSVTNLLATADKILKRADGA IGELQGFVQDARGPLTQTVRNAEKFSDALAANSDGIKSFIASLSSLSTTVQSVSVRLD GTLTAVEDLVKAVDAGKIDSILSNVDKVTKDVASASSDIQGIMETVQSTARNFEAAST EVQTVVKRADELLASVDPAKVSTVVGDVSAATADARDAVANFKRIADDVGARRADIDQ AVSDFTDMGRKLNLASSRVDGILAKVDGMLGTDDANSLFAKARETLTSFKAVADNLNA RIGPIADNLTRFSSSGLKDFQALIGSTRQTVDNLNNAITNIDRDPQRLIFGGETVKQY DGRTRR" misc_feature complement(1591063..1592151) /locus_tag="AGROH133_06502" /note="ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463" /db_xref="CDD:31652" misc_feature complement(1591804..1592013) /locus_tag="AGROH133_06502" /note="mce related protein; Region: MCE; cl03606" /db_xref="CDD:186584" gene complement(1592160..1592996) /locus_tag="AGROH133_06504" /db_xref="GeneID:10267365" CDS complement(1592160..1592996) /locus_tag="AGROH133_06504" /EC_number="3.6.3.27" /note="ABC transporter related; ABC-type transport system involved in resistance to organic solvents, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004278897.1" /db_xref="GI:325293033" /db_xref="GeneID:10267365" /translation="METLDQKPQETKTAKDGRETVLSVEGVTVGFNGRNVLENLDLDV YRGEILGFIGPSGAGKSVLMRAILRLLPRQAGAIRILGTDYDKASEDDRMMLDQRLGV LFQQGALFSGLTVKENIQLPMREYLDLPKKLMDELAYLKIEMVGLKPDAGDKYPSELS GGMIKRAALARALSLDPDLVFLDEPTSGLDPIGAAEFDMLIARLRDSLGLTVYMVTHD LDSLFSVCDRIAVLGQKKVLVEGTLQDMFACDDPWVQSYFRGKRARSVVLPDDRHENP VE" misc_feature complement(1592178..1592942) /locus_tag="AGROH133_06504" /note="ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127" /db_xref="CDD:31324" misc_feature complement(1592226..1592933) /locus_tag="AGROH133_06504" /note="ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex...; Region: ABC_Org_Solvent_Resistant; cd03261" /db_xref="CDD:73020" misc_feature complement(1592814..1592837) /locus_tag="AGROH133_06504" /note="Walker A/P-loop; other site" /db_xref="CDD:73020" misc_feature complement(order(1592346..1592348,1592445..1592450, 1592682..1592684,1592811..1592819,1592823..1592828)) /locus_tag="AGROH133_06504" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73020" misc_feature complement(1592682..1592693) /locus_tag="AGROH133_06504" /note="Q-loop/lid; other site" /db_xref="CDD:73020" misc_feature complement(1592493..1592522) /locus_tag="AGROH133_06504" /note="ABC transporter signature motif; other site" /db_xref="CDD:73020" misc_feature complement(1592445..1592462) /locus_tag="AGROH133_06504" /note="Walker B; other site" /db_xref="CDD:73020" misc_feature complement(1592427..1592438) /locus_tag="AGROH133_06504" /note="D-loop; other site" /db_xref="CDD:73020" misc_feature complement(1592340..1592360) /locus_tag="AGROH133_06504" /note="H-loop/switch region; other site" /db_xref="CDD:73020" gene complement(1593007..1594167) /locus_tag="AGROH133_06505" /db_xref="GeneID:10267366" CDS complement(1593007..1594167) /locus_tag="AGROH133_06505" /note="Protein of unknown function DUF140; ABC-type transport system involved in resistance to organic solvents, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004278898.1" /db_xref="GI:325293034" /db_xref="GeneID:10267366" /translation="MQEQDIRQQANPAAITEDDAVSGGGQRYALSGSWRNSNLSGIFA RLENIEKSGPAGPVEIDLSSVEAIDTTGAWVIRRLREDMEAKGVTVTLTGNERIEDLI GQLPDKAAMEGEPVAKVGLAERFFSPIGQAVVQNGADFLAGMYILGSAVRGAQMKLGR GRGVSPAAIVNQIDHMGVRAVPIIMLMSFLIGAIIAQQGAFQLRYFGAEVFVVDLVGI LQLREIGVLLTAIMIAGRSGSAITAEIGSMKMREEIDALKVIGLNPVGVLVFPRLVAL TIALPLLTILANFAALFGAAIVTLLYSGITFEVFLSRLHGAVEESTIAAGMIKAPFMA LIIGIVAAVEGMKVGGSAESLGKHVTSSVVKSIFVVILVDGLFAIFYAAIDF" misc_feature complement(1593853..>1594056) /locus_tag="AGROH133_06505" /note="Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors; Region: STAS; cl00604" /db_xref="CDD:153881" misc_feature complement(1593010..1593804) /locus_tag="AGROH133_06505" /note="Domain of unknown function DUF140; Region: DUF140; cl00510" /db_xref="CDD:186046" gene 1594311..1595294 /locus_tag="AGROH133_06512" /db_xref="GeneID:10267367" CDS 1594311..1595294 /locus_tag="AGROH133_06512" /note="Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily" /codon_start=1 /transl_table=11 /product="mandelate racemase/muconate lactonizing enzyme" /protein_id="YP_004278899.1" /db_xref="GI:325293035" /db_xref="GeneID:10267367" /translation="MPRYLQATTERFAVAGSFTISRGTRTHADVVTCTIRDGSFTGRG ECVPYPRYGESIEGVIADIEAMAEQIAGGLTRHELQQVMKPGAARNAVDCALWDLEAK MSGKSAAEHSLGHAAKPLVTAYTISLADPETMAAKTAENAGRPLLKIKTGTADDEARL RAVRTAAPDARIIIDANEGWNDDNIEYYLKLAAELNIALIEQPLPAGKDAILARIDHP VPICADESVHSTKDLADLRDRYDAINIKLDKTGGLTEALVMKAEAERLGFIIMVGCML GTSLGMAPAVLAAQGAAFSDLDGPLILRQDRQPGLVYEGSLVYPPQPELWG" misc_feature 1594320..1595219 /locus_tag="AGROH133_06512" /note="L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism...; Region: L-Ala-DL-Glu_epimerase; cd03319" /db_xref="CDD:48194" misc_feature 1594362..1595243 /locus_tag="AGROH133_06512" /note="L-Ala-D/L-Glu epimerase; Provisional; Region: PRK15129" /db_xref="CDD:185083" misc_feature order(1594377..1594379,1594683..1594685,1594752..1594754, 1594758..1594760,1594833..1594835,1594911..1594913, 1594980..1594982,1595130..1595132,1595136..1595138, 1595196..1595198,1595202..1595204) /locus_tag="AGROH133_06512" /note="active site" /db_xref="CDD:48194" gene complement(1595537..1596364) /locus_tag="AGROH133_06514" /db_xref="GeneID:10267368" CDS complement(1595537..1596364) /locus_tag="AGROH133_06514" /EC_number="3.6.1.-" /note="Metallophosphoesterase; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="UDP-2,3-diacylglucosamine hydrolase protein" /protein_id="YP_004278900.1" /db_xref="GI:325293036" /db_xref="GeneID:10267368" /translation="MAGQIETRQFRTLFISDVHLGSKAAKTDFLLDFLKHHEADTIIL VGDIIDGWRLRRSWYWPQGCNDVVQKLLRKARKGTRIVYIPGNHDEFLREFPGMHFGG IEVAERMIHEAADGKKYLIIHGDEFDVVVRNARLLAYLGDWAYDAAIAINIVLAAVRR RIGLPYWSFSAWAKLQVKHAVNFIGEFQRVVADEARRNNVDGVICGHIHHAVMEDMDG IRYINTGDWVESCTAIAENADGTFELITWMQTSDVPSQTSDEMEPVDIPGLIGKHAA" misc_feature complement(1595735..1596337) /locus_tag="AGROH133_06514" /note="Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149" /db_xref="CDD:189420" misc_feature complement(1595684..1596328) /locus_tag="AGROH133_06514" /note="Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398" /db_xref="CDD:163641" misc_feature complement(order(1595738..1595740,1595744..1595746, 1595996..1595998,1596101..1596106,1596224..1596226, 1596308..1596310,1596314..1596316)) /locus_tag="AGROH133_06514" /note="putative active site [active]" /db_xref="CDD:163641" misc_feature complement(order(1595738..1595740,1595744..1595746, 1595996..1595998,1596104..1596106,1596224..1596226, 1596308..1596310,1596314..1596316)) /locus_tag="AGROH133_06514" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163641" gene 1596603..1598918 /gene="maeB" /locus_tag="AGROH133_06515" /db_xref="GeneID:10267369" CDS 1596603..1598918 /gene="maeB" /locus_tag="AGROH133_06515" /EC_number="1.1.1.40" /note="NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; Malic enzyme" /codon_start=1 /transl_table=11 /product="NADP-dependent malic enzyme" /protein_id="YP_004278901.1" /db_xref="GI:325293037" /db_xref="GeneID:10267369" /translation="MTSHDKNNTPANTAKADIEEQALFFHRYPRPGKLEIQATKPLGN QRDLALAYSPGVAAPCLAIHENPEMAAEYTARANLVAVISNGTAVLGLGNIGPLASKP VMEGKAVLFKKFAGIDVFDIEIDAPGINDMVSTIAALEPTFGGINLEDIKAPECFEVE RQLREKMNIPVFHDDQHGTAIIVAAAVTNALELAGKSLSSVKIVASGAGAAALACLNL LVAMGAKKENIWVHDIEGLVYDGRNSLMDEWKEVYAQKTDKRVLADSIDGADVFLGLS AAGVLKPELLERMAENPLILALANPNPEIMPEVARAARPDAMICTGRSDFPNQVNNVL CFPYIFRGALDCGATTINEEMKMAAVQAIAELAREEVSEVAAKAYSGETPIFGPNYLI PSPFDPRLILRIAPAVARAAAASGVAARPISDFEAYLDQLNRFVWRSGFIMKPVFNAA KVAEKKRIIFAEGEDERVLRAAQVLLEEGTGIPILIGRPQIIETRLKRFGLRIRPNTD FAVVNPEDDPRYRDYVDDYFALVGRAGINPEAARTIVRTNSTVIGALSVKRGEADALI CGLEGRYDRHLRDVNQIIGKQESVRSFAGLSLLITQQGALFLTDTFVNNDPTSEEVAE MAILAAKEIRRFGITPKIALASHSNFGSRDSESARKMRRALKIVQAAAPELEVDGEMQ GGSALSEALRKRAMPNSVLTGEANLLVFPNLDAANITLGVTRTLTEGLHVGPILLGTA LPAHILSPSVTSRGVVNMAAFAVVQASHPSV" misc_feature 1596624..1598909 /gene="maeB" /locus_tag="AGROH133_06515" /note="malic enzyme; Reviewed; Region: PRK12862" /db_xref="CDD:183799" misc_feature 1596693..1597094 /gene="maeB" /locus_tag="AGROH133_06515" /note="Malic enzyme, N-terminal domain; Region: malic; pfam00390" /db_xref="CDD:144108" misc_feature 1597128..1597811 /gene="maeB" /locus_tag="AGROH133_06515" /note="NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311" /db_xref="CDD:133453" misc_feature order(1597224..1597235,1597299..1597304,1597425..1597430, 1597440..1597442,1597494..1597502,1597566..1597568, 1597590..1597592,1597596..1597598) /gene="maeB" /locus_tag="AGROH133_06515" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:133453" misc_feature 1597923..1598891 /gene="maeB" /locus_tag="AGROH133_06515" /note="Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl00390" /db_xref="CDD:193798" gene 1598946..1600154 /locus_tag="AGROH133_06516" /db_xref="GeneID:10267370" CDS 1598946..1600154 /locus_tag="AGROH133_06516" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278902.1" /db_xref="GI:325293038" /db_xref="GeneID:10267370" /translation="MLLPHCGNSLCYLPETRISRSITPSPPAGDIERIAPLTRRRSII GLLLPLVFIAPAAAFADQVCDTLYAQLREPPRVIGNTAEVRRYANALTRQNIEIRRIR NDLRRYGCSSASVTVYGSPNAELCAEISDAMADAQSERDAIIRDRDDAMAAQGNDDGD IRRQRILAALDANGCSAIPETEARQPTAPNVTRYPDAFGQQGNPPGQAGLSPYPNAAA EGGLRTLCVRTCDGSFFPIASNASPLDFRAQAEQCQKMCPGTQTELYFHSMTEQETAD MVSAETGKPYKDLPTAFAYRNASTKAPGCACNMAAYHEEMKQQEAARPEAEKPYSSIT TIPSPQGDTPKKPTELQQAAKPPEQPVPERDYDPNNSRVRVIGPKFLPDQTGRIDLKN PALKGIQPQQ" misc_feature 1599603..>1599881 /locus_tag="AGROH133_06516" /note="Protein of unknown function (DUF2865); Region: DUF2865; pfam11064" /db_xref="CDD:151509" gene complement(1600224..1600940) /locus_tag="AGROH133_06517" /db_xref="GeneID:10267371" CDS complement(1600224..1600940) /locus_tag="AGROH133_06517" /EC_number="1.16.8.1" /note="Cob(II)yrinic acid a,c-diamide reductase" /codon_start=1 /transl_table=11 /product="Nitroreductase" /protein_id="YP_004278903.1" /db_xref="GI:325293039" /db_xref="GeneID:10267371" /translation="MPTDPLATSSLDANAFDHALSPAYPFSEGEREAIYRAIETRRDV RDQFLPDPLPEDVVERLLKAAHSAPSVGFMQPWNFTLVTDGAVRQAAWVAFSRANGEA TAMFEGEQQALYRSLKLEGIRKAPLSICVTCDPTRGGKVVLGRTHNPRTDVYSTVCAI QNLWLAARAEGIGVGWVSIFHDSDIRTILEIPDHIEIVAWLCLGRVDTLYTEPELAVK GWRQRVPLEELVFRNRWGGR" misc_feature complement(1600248..1600838) /locus_tag="AGROH133_06517" /note="Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(; Region: BluB; cd02145" /db_xref="CDD:48391" misc_feature complement(order(1600404..1600409,1600725..1600727, 1600806..1600808,1600812..1600814,1600818..1600820)) /locus_tag="AGROH133_06517" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:48391" gene complement(1601353..1602183) /gene="tolB" /locus_tag="AGROH133_06518" /db_xref="GeneID:10267372" CDS complement(1601353..1602183) /gene="tolB" /locus_tag="AGROH133_06518" /note="Six-bladed beta-propeller, TolB-like; Periplasmic component of the Tol biopolymer transport system" /codon_start=1 /transl_table=11 /product="tolB protein" /protein_id="YP_004278904.1" /db_xref="GI:325293040" /db_xref="GeneID:10267372" /translation="MRSSIEIFNIRTRQMRVVWQTPQLFEAPNWSPDGKYLLLNCDGL LYRLSLAGDPSPEKVDTGFATICNNDHGISPDGSLYAISDKVEFGKSAIYLLPSTGGT PRLMTKNLPSYWHGWSPDGKGFAYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPD YSPDGEWIYFNSSRTGQMQIWRVRVDGSAVERITDSAYGDWFPHPSPSGDKVVFVSYD ADVFDHPRDLNVRVRLMDMDGGNAETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPVG " misc_feature complement(1601422..>1602183) /gene="tolB" /locus_tag="AGROH133_06518" /note="Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]; Region: TolB; COG0823" /db_xref="CDD:31165" misc_feature complement(1601638..1601745) /gene="tolB" /locus_tag="AGROH133_06518" /note="WD40-like Beta Propeller Repeat; Region: PD40; pfam07676" /db_xref="CDD:191808" gene 1602376..1602753 /locus_tag="AGROH133_06519" /db_xref="GeneID:10267373" CDS 1602376..1602753 /locus_tag="AGROH133_06519" /note="Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004278905.1" /db_xref="GI:325293041" /db_xref="GeneID:10267373" /translation="MNTIADHGIRFGRIAAMLPVKNIEKAHDFYVRVLGFEKTFEKGN PVGFMILKQGNAELHLTLQSTHKPAPFNVAHMLVSDADALHALCKSHGLRIIKSLQDK DYGLRAFVFEDPDGNRIDVGQVI" misc_feature 1602427..1602744 /locus_tag="AGROH133_06519" /note="Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm; Region: BLMA_like; cd08349" /db_xref="CDD:176697" misc_feature order(1602490..1602495,1602517..1602519,1602550..1602552, 1602556..1602561,1602598..1602600,1602682..1602684, 1602703..1602705,1602709..1602711,1602721..1602729, 1602733..1602735) /locus_tag="AGROH133_06519" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:176697" misc_feature order(1602517..1602519,1602538..1602546,1602550..1602552, 1602592..1602609,1602622..1602627,1602634..1602636, 1602736..1602738) /locus_tag="AGROH133_06519" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176697" gene complement(1602903..1604582) /gene="nadE" /locus_tag="AGROH133_06520" /db_xref="GeneID:10267374" CDS complement(1602903..1604582) /gene="nadE" /locus_tag="AGROH133_06520" /EC_number="6.3.5.1" /note="NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthase" /codon_start=1 /transl_table=11 /product="NH3-dependent NAD synthetase" /protein_id="YP_004278906.1" /db_xref="GI:325293042" /db_xref="GeneID:10267374" /translation="MSDRHDIKNHLRIAVGQFNPTVGDVAGNLARAREARADAATQGA DLLLLTELFISGYPPEDLVLKPAFLKACLKAVEELAAETADGGPGVVIGFPRQGETGR HNSVALLDGGKIIALRDKIDLPNYGEFDEKRVFAEGSISGPYNFRGVRIGIPICEEIW NDMGVCETLAESGAEILLVPNGSPYYRGKLDVRHQVALKQVIESGLPLVFANQLGGQD ELVFDGASFGFNADKTLAFQMSQFEATLAVTDWKRTAEGWRCESGPFSKIPEGEEADY RACMLGFRDYVNKNGFKSVVLGLSGGIDSAICAALAVDALGEERVRCIMLPYRYTSED SLKDAADCARALGCRYDIVPIAEPVDGFLSALSEMFEGTEEGITEENLQSRTRGTILM AVSNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYAISSWRNSHVPP GALGPSGEVIPANIISKAPSAELRPNQTDQDSLPPYPVLDDILECLVEKEMSVEEILA RGHDIATVHRIEHLLYLAEYKRRQSAPGVKITKKNFGRDRRYPITNRFRDR" misc_feature complement(1602906..1604552) /gene="nadE" /locus_tag="AGROH133_06520" /note="NAD synthetase; Provisional; Region: PRK13981" /db_xref="CDD:184436" misc_feature complement(1603755..1604549) /gene="nadE" /locus_tag="AGROH133_06520" /note="Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases); Region: GAT_Gln-NAD-synth; cd07570" /db_xref="CDD:143594" misc_feature complement(order(1603755..1603778,1603809..1603814, 1603818..1603820,1603860..1603862,1603920..1603922, 1603926..1603940,1603974..1603979,1603986..1603991, 1603998..1604000,1604010..1604012,1604019..1604030, 1604064..1604066,1604073..1604075,1604079..1604084, 1604094..1604108,1604112..1604114,1604166..1604168, 1604172..1604177,1604184..1604189,1604193..1604195, 1604199..1604207,1604211..1604219,1604274..1604279, 1604292..1604294,1604373..1604375,1604382..1604393, 1604397..1604408,1604505..1604519)) /gene="nadE" /locus_tag="AGROH133_06520" /note="multimer interface [polypeptide binding]; other site" /db_xref="CDD:143594" misc_feature complement(order(1604016..1604018,1604103..1604105, 1604112..1604117,1604190..1604192,1604196..1604198, 1604205..1604207,1604211..1604213,1604223..1604225, 1604430..1604432)) /gene="nadE" /locus_tag="AGROH133_06520" /note="active site" /db_xref="CDD:143594" misc_feature complement(order(1604115..1604117,1604223..1604225, 1604430..1604432)) /gene="nadE" /locus_tag="AGROH133_06520" /note="catalytic triad [active]" /db_xref="CDD:143594" misc_feature complement(order(1603758..1603763,1603770..1603775, 1603812..1603814,1603860..1603862,1603920..1603922, 1603926..1603934,1603938..1603940,1603974..1603979, 1603986..1603991,1603998..1604000,1604010..1604012, 1604019..1604030,1604079..1604084,1604094..1604108, 1604112..1604114,1604166..1604168,1604193..1604195, 1604199..1604207,1604211..1604219)) /gene="nadE" /locus_tag="AGROH133_06520" /note="protein interface 1 [polypeptide binding]; other site" /db_xref="CDD:143594" misc_feature complement(1602993..1603769) /gene="nadE" /locus_tag="AGROH133_06520" /note="NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to...; Region: NAD_synthase; cd00553" /db_xref="CDD:30166" misc_feature complement(order(1602993..1602995,1602999..1603001, 1603290..1603295,1603302..1603319,1603326..1603331, 1603392..1603397,1603401..1603409,1603413..1603421, 1603425..1603430,1603437..1603439,1603449..1603451, 1603503..1603508,1603515..1603520,1603527..1603538, 1603725..1603730,1603737..1603739,1603746..1603751)) /gene="nadE" /locus_tag="AGROH133_06520" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:30166" misc_feature complement(order(1602996..1603001,1603137..1603139, 1603164..1603166,1603170..1603175,1603320..1603322, 1603329..1603340,1603353..1603355,1603368..1603370, 1603422..1603424,1603428..1603433,1603440..1603442, 1603452..1603454,1603605..1603613,1603668..1603670, 1603683..1603694)) /gene="nadE" /locus_tag="AGROH133_06520" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:30166" misc_feature complement(order(1603173..1603178,1603281..1603283, 1603368..1603370,1603422..1603424,1603605..1603610, 1603668..1603673,1603683..1603691)) /gene="nadE" /locus_tag="AGROH133_06520" /note="ATP binding pocket [chemical binding]; other site" /db_xref="CDD:30166" misc_feature complement(order(1603173..1603175,1603353..1603355, 1603671..1603673,1603683..1603685)) /gene="nadE" /locus_tag="AGROH133_06520" /note="Mg binding site [ion binding]; other site" /db_xref="CDD:30166" misc_feature complement(order(1603134..1603157,1603164..1603187, 1603584..1603586)) /gene="nadE" /locus_tag="AGROH133_06520" /note="active-site loop [active]" /db_xref="CDD:30166" gene 1604820..1606754 /gene="cgmA" /locus_tag="AGROH133_06521" /db_xref="GeneID:10267375" CDS 1604820..1606754 /gene="cgmA" /locus_tag="AGROH133_06521" /note="cyclic glucan phosphoglycerol modification protein; Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily" /codon_start=1 /transl_table=11 /product="cyclic beta-1,2-glucan modification protein" /protein_id="YP_004278907.1" /db_xref="GI:325293043" /db_xref="GeneID:10267375" /translation="MRNSAPKTTASEKADFVFSPAWTRSLSKLSGKAYTLANLTFSSV VLVVALEWIARGSLVDVGTFLTSSARPGMTTIAAVLLLLVALDSILGRRYLSLIAVAP LCALTGLISAQKQTYLSDPLYPSDLLFGRQILELLPTMLKAQPLTAVLVGLGLCATVA ALSTLWLLARRYSPGLSWRERAAGLVLALPLLAGLASLMDYSHYSWVRDRLNIIPMMW DQQENYRHNGFLMAFAFNIPMANVSAPQGYGENSIADLTSEPAAFAANTGDYPDVIML MSESLWDPTRLENVKLSADPMPNIRAKQSGNVFSPEFGGMTANVEFEALTGFSNAFLP YGSIPYQQYIRRPVPSLASFFRGEGYSAIAMHPFQEWFWNRKEVYRNFGFEEFRSEET LPPMEKRGNFASDDALMDQIMVAADDARNPLFLFAVTLQGHGPYEAGRYASDTIGVEG DLSASASQALGTYAQGVAEADDVLLKLMRWAKKRERETIIVLFGDHLPPLGQTFVESG YMPGMVASRRAPLEIMKKEHETPLVVWSSKTGVRKNIGTISPALLPYHVLKTAGFSDP FYTGTLGEVQDAFSVVDRHMLVATDGKALPDWSISPNSIPDVVRNYRLLQFDMMFGEQ YGRERFFPGFNWVNDATPSV" misc_feature 1604829..1606739 /gene="cgmA" /locus_tag="AGROH133_06521" /note="Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]; Region: MdoB; COG1368" /db_xref="CDD:31559" misc_feature 1605630..1606517 /gene="cgmA" /locus_tag="AGROH133_06521" /note="Sulfatase; Region: Sulfatase; cl10460" /db_xref="CDD:195965" gene 1606864..1607397 /locus_tag="AGROH133_06527" /db_xref="GeneID:10267376" CDS 1606864..1607397 /locus_tag="AGROH133_06527" /note="Protein of unknown function DUF1003; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278908.1" /db_xref="GI:325293044" /db_xref="GeneID:10267376" /translation="MSDISDYIVSHFKRSSREIGEVERRILELSHQKKLVSTDTNAEF SAGANLGDRLADSIARVGGSWGFILSFCFFLVFWAIINTIVLTTRAFDPYPFIFLNLL LSMLAAIQAPIIMMSQNRQAARDRFEAAKDYEVNLKAELEVLSLHEKIDVKVLAELAA LRQDLAALHRHVTRKED" misc_feature 1606885..1607394 /locus_tag="AGROH133_06527" /note="Protein of unknown function (DUF1003); Region: DUF1003; cl01831" /db_xref="CDD:154613" gene 1607462..1607656 /locus_tag="AGROH133_06530" /db_xref="GeneID:10267377" CDS 1607462..1607656 /locus_tag="AGROH133_06530" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278909.1" /db_xref="GI:325293045" /db_xref="GeneID:10267377" /translation="MNAVLPGRRQTWRKPKDGPGGGNGGTFMVTGPFRKRPCTASCEI RLSGKARSRKHPSTPTPISA" gene 1607941..1609344 /gene="sthA" /locus_tag="AGROH133_06531" /db_xref="GeneID:10267378" CDS 1607941..1609344 /gene="sthA" /locus_tag="AGROH133_06531" /EC_number="1.6.1.1" /note="catalyzes the conversion of NADPH to NADH; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes" /codon_start=1 /transl_table=11 /product="NAD / NADP transhydrogenase" /protein_id="YP_004278910.1" /db_xref="GI:325293046" /db_xref="GeneID:10267378" /translation="MYQFDLIVIGSGPAGRRAAIQAAKLEKRVLVIEKGSRVGGVSVH TGTIPSKTLRETALNLTGWRERGFYGRSYRVKQEIDADDLRRRLLITLDHEVEVLEHQ FARNRVQHIRGTASFVDANTVKVVKNDGEVMNVTGASILLAIGTRPYRPPHIPFDGAA VLDSDEILEIKELPRSMVVVGAGVIGIEYATIFSALDTQVTVVEPRETMLEFIDKEIV EDFTYQLRDRNMKLIFGQKAEKVERDDSGKCLVSLSNGRVLKAETVLFAAGRVGATDT LNLSACGLEADSRGRLKVNPETFQTTVPNIYAAGDIIGFPSLASTSMEQGRIAARHAV GAPAGEPPQFFPYGIYAVPEISTCGLTEEEVTERHIPYECGIAHFRETSRGHIMGLDS GLLKMIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAY KIAGLDAWNRMGELKKD" misc_feature 1607941..1609326 /gene="sthA" /locus_tag="AGROH133_06531" /note="soluble pyridine nucleotide transhydrogenase; Provisional; Region: PRK05249" /db_xref="CDD:179973" misc_feature 1607950..>1608057 /gene="sthA" /locus_tag="AGROH133_06531" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 1608466..1608693 /gene="sthA" /locus_tag="AGROH133_06531" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" misc_feature 1608976..1609299 /gene="sthA" /locus_tag="AGROH133_06531" /note="Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852" /db_xref="CDD:190451" gene complement(1609546..1610196) /locus_tag="AGROH133_06532" /db_xref="GeneID:10267379" CDS complement(1609546..1610196) /locus_tag="AGROH133_06532" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278911.1" /db_xref="GI:325293047" /db_xref="GeneID:10267379" /translation="MSPRTGFALLFSLFAAIGTNARADEPELIWKPVKNSDRSYTARI GAKLPVETPIRAGLEMGMNASRTGQVVDTPVRLWGNVTLLAEQLPGVSLARDVGVLFN ALTGSSSVSMTSRQKRIVTPELDIEANRNFTVRYDGTAQQWNGLDVSQSLRLSRSETG TAFVLTGASRNSFNEFSSGVAVEQKIGDHLTVRGTLDQGYADHFRPGVSARYSIRW" gene complement(1610452..1611018) /locus_tag="AGROH133_06534" /db_xref="GeneID:10267380" CDS complement(1610452..1611018) /locus_tag="AGROH133_06534" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278912.1" /db_xref="GI:325293048" /db_xref="GeneID:10267380" /translation="MTGRWAVAAMGRRNYLIEGVSGAGKTSVATELQQRGFHVIHGDR ELAYKGDPETGETMDVALFQGDDTKIAFRHRHHIWNVEKVRQLVADQEHAVTFFCGGS RNFRRFIDLFDEVFVLDVDAATLLRRLAARPEDEFGGNLAERQFVLQLHATKEDLPVG ASAIDSSRSLGVVVDDILARCVVPKAGN" misc_feature complement(<1610890..1610976) /locus_tag="AGROH133_06534" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 1611180..1612280 /locus_tag="AGROH133_06535" /db_xref="GeneID:10267381" CDS 1611180..1612280 /locus_tag="AGROH133_06535" /EC_number="3.5.1.4" /note="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Predicted amidohydrolase" /codon_start=1 /transl_table=11 /product="amidohydrolase" /protein_id="YP_004278913.1" /db_xref="GI:325293049" /db_xref="GeneID:10267381" /translation="MVLNGGKGTFVVSGYCLGPIVSGGLLGNRVRDVKGLIMTQNNNF KRRVRARAAKTGESYTAALKHIRRTPDMPVSPSLRMAVAQTSLVDDPRMVSALKAAGQ EIRRLMCDAHKAGARLIHFPEGATCWPNKRIMSETGPREIGPSDWTRFEWETLRRELE ASRKLARRLKIWTILGSVHQLTPPHRPYNSLYVISDRGKLITRYDERLLSNTKISFMY SPGTVPVTFEIDGFRFGCALGMEAHYPEIFMEYEKLNVDCVLFSTAGDGPSNAPAFAA EILGHAVSNTYWASYSTLAAQSTAAPSGIAAPDGRWVAQCPMNGLPAIAIADIAIDRE NPARPWRRKARSDLYAPHQVNNDPRSDSREQF" misc_feature 1611420..1612136 /locus_tag="AGROH133_06535" /note="Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes; Region: nitrilase; cd07197" /db_xref="CDD:143587" misc_feature order(1611546..1611548,1611795..1611797,1611807..1611809, 1611819..1611821,1611894..1611899,1611903..1611908, 1611969..1611971) /locus_tag="AGROH133_06535" /note="active site" /db_xref="CDD:143587" misc_feature order(1611546..1611548,1611795..1611797,1611894..1611896) /locus_tag="AGROH133_06535" /note="catalytic triad [active]" /db_xref="CDD:143587" misc_feature order(1611798..1611809,1611816..1611818,1611837..1611845, 1611897..1611899,1611903..1611917,1611924..1611929, 1612005..1612010,1612014..1612022,1612026..1612031, 1612080..1612085) /locus_tag="AGROH133_06535" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143587" gene complement(1612420..1613898) /gene="tig" /locus_tag="AGROH133_06536" /db_xref="GeneID:10267382" CDS complement(1612420..1613898) /gene="tig" /locus_tag="AGROH133_06536" /note="Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)" /codon_start=1 /transl_table=11 /product="trigger factor" /protein_id="YP_004278914.1" /db_xref="GI:325293050" /db_xref="GeneID:10267382" /translation="MQVIETLAEGLKRELKVVIPAADMKARLDERLVDAKDKVRINGF RPGKVPMGHLKKMYGKSIMADLVNELVREKPSEILSSRGEKSATQPAISMTEDEQEAE KILSAETDFEFTVAYEIIPAIELKANDGIKVTREVVEVSEDEINEQILKIAESARTFE AKKGKAAEGDRVTMNYLGKVDGEAFDGGAAEDAELVLGSGRFIPGFEDQLVGVKAGDE KTITVTFPADYPAANLAGKEANFDITVKEVAAAAAVEINDELAEKLGLESAEKLKEIV RGQIESQYGNVTRQKVKRQILDQLDEMYKFDTPAGLVDAEFDNIWRQINTDLAQSGKT FADEDTTEEEAREEYRKLAERRVRLGLVLSEIGEKAGVEVTEEEMQRALFQQLQQFPG QQKEILDFFRNTPGASASLRAPIFEEKVIDKLLTEISVTDKTVSKEELLADDGEEATE TKKKAPAKKKAAAKADDAAEGEEAAPKKKAPAKKKATEADAE" misc_feature complement(1612573..1613898) /gene="tig" /locus_tag="AGROH133_06536" /note="trigger factor; Provisional; Region: tig; PRK01490" /db_xref="CDD:179299" misc_feature complement(1613161..1613415) /gene="tig" /locus_tag="AGROH133_06536" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587" /db_xref="CDD:187101" misc_feature complement(1612624..1613097) /gene="tig" /locus_tag="AGROH133_06536" /note="Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698" /db_xref="CDD:191345" gene complement(1614139..1614221) /locus_tag="AGROH133_06537" /db_xref="GeneID:10267383" tRNA complement(1614139..1614221) /locus_tag="AGROH133_06537" /product="tRNA-Leu" /db_xref="GeneID:10267383" gene 1614879..1615025 /locus_tag="AGROH133_06538" /db_xref="GeneID:10267384" CDS 1614879..1615025 /locus_tag="AGROH133_06538" /note="Protein of unknown function DUF1127" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278915.1" /db_xref="GI:325293051" /db_xref="GeneID:10267384" /translation="MNITRSLTNWRKYRQTVTELGRMTDRELSDLGIGRQDIRRVART AVGI" misc_feature 1614879..1614998 /locus_tag="AGROH133_06538" /note="Domain of unknown function (DUF1127); Region: DUF1127; cl02276" /db_xref="CDD:154833" gene 1615501..1615644 /locus_tag="AGROH133_06539" /db_xref="GeneID:10267385" CDS 1615501..1615644 /locus_tag="AGROH133_06539" /note="Protein of unknown function DUF1127" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278916.1" /db_xref="GI:325293052" /db_xref="GeneID:10267385" /translation="MNPIRIAKNWISYRRTINELGSLSNQALSDIGLTRYDIRNVASR SFR" misc_feature <1615501..1615641 /locus_tag="AGROH133_06539" /note="Domain of unknown function (DUF1127); Region: DUF1127; cl02276" /db_xref="CDD:154833" gene 1615940..1617397 /gene="gidA" /locus_tag="AGROH133_06540" /db_xref="GeneID:10267386" CDS 1615940..1617397 /gene="gidA" /locus_tag="AGROH133_06540" /EC_number="2.1.1.74" /note="TrmFO; Gid; glucose-inhibited division protein; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; NAD(FAD)-utilizing enzyme possibly involved in translation" /codon_start=1 /transl_table=11 /product="tRNA uracil-5-methyltransferase Gid" /protein_id="YP_004278917.1" /db_xref="GI:325293053" /db_xref="GeneID:10267386" /translation="MGASMQDKTYSPIHVVGGGLAGSEAAWQIAESGVPVILHEMRGV RGTEAHKGDTLAELVCSNSFRSDDATANAVGVIHAEMRLAGSLIMACADRHQVPAGGA LAVDRDGFSQAVTDRLESHPLVTILREEVSGLPPKEWGSSIIATGPLTSPDLAAAVQA ETGEDALAFFDAIAPIVHRDSINMDICWYQSRYDKVGPGGTGKDYINCPMNEEQYNAF IDALIAGDTVGLKEWEGTPYFDGCLPIEIMAERGRQTLRHGPMKPMGLTNAHNPTVKA YAVVQLRQDNALGTLYNMVGFQTKLKYGAQADVFRMIPGLQNAEFARLGGLHRNTYID SPVLLDPSLKLKSRPDLRFAGQITGCEGYVESASVGLLAGRFAAAERKGETPSLPPAT TALGSLLNHITGGHLSSNDEPGKRSFQPMNINFGLFPELEPGSIVKPEGVKRFRGKDK TIMKRQLVAARALRDCATWLNGGEVILETVTDHYR" misc_feature 1615964..1617355 /gene="gidA" /locus_tag="AGROH133_06540" /note="NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; cl11520" /db_xref="CDD:187089" misc_feature 1615973..1617091 /gene="gidA" /locus_tag="AGROH133_06540" /note="Glucose inhibited division protein A; Region: GIDA; pfam01134" /db_xref="CDD:144651" gene complement(1617441..1618019) /locus_tag="AGROH133_06541" /db_xref="GeneID:10267387" CDS complement(1617441..1618019) /locus_tag="AGROH133_06541" /note="TadE-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278918.1" /db_xref="GI:325293054" /db_xref="GeneID:10267387" /translation="MIGKRLKYLSISLISSRSGVAAVELALLMPLLILVLAMVIEIGR GWMSYDRFVTVVDNTARWSARFPEFEERVRTGVKSFVMAAGRPLESEKLDLTLRSAKL VGGVAVTEFAPYNFFGNAENVKWDKILTQGNFKTEEAVIVISGRYKYRPLISLLGNTD IEFEYVTAVNPYFSRHYKYQKGKSDWLFWNVR" gene complement(1618016..1618549) /locus_tag="AGROH133_06543" /db_xref="GeneID:10267388" CDS complement(1618016..1618549) /locus_tag="AGROH133_06543" /note="TadE-like; Flp pilus assembly protein TadG" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278919.1" /db_xref="GI:325293055" /db_xref="GeneID:10267388" /translation="MTRFKISHCDFPSLIRSLATDIRAATAVEFGLLLPVYLLLIFGI IEVSLVLFFSLNMSTAATAGTEYLRKAAAGRTSVTAAEFRQVIASNFLLATTEDDLKI SLIAIADANLATTPVTFPVENKFETPSKAAGQYLLALGYDWKFILPTTHLLVPSSGGK PQLQNLSLAITAVRVTE" misc_feature complement(1618100..1618513) /locus_tag="AGROH133_06543" /note="Flp pilus assembly protein TadG [Intracellular trafficking and secretion]; Region: TadG; COG4961" /db_xref="CDD:34568" misc_feature complement(1618358..1618477) /locus_tag="AGROH133_06543" /note="TadE-like protein; Region: TadE; pfam07811" /db_xref="CDD:191859" gene complement(1618536..1619813) /locus_tag="AGROH133_06545" /db_xref="GeneID:10267389" CDS complement(1618536..1619813) /locus_tag="AGROH133_06545" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278920.1" /db_xref="GI:325293056" /db_xref="GeneID:10267389" /translation="MKRHFQMLNFKTKLHGLAEIFGAFLHDRRASFAIMTALLLPVFL LFFGFLFEGGRALAYYSQSKRVVAQACERSTKPTRTNVPLDEVRRKNVLDTFDALIRS TKQDVVSRDVKIDWLTTDIDAKFSYKTVFAGMFGAEKLDYQLSYRCGGIPPYPHDGEV VVNNTFEKTLNGTERMLKNGRTAKTPNGCWGVYTYAELGWDGGTGPGIELQDWSNADC RKNYGWQGYGDQEKEKETSAGMTCTPKSQATLPKENNDSKNGSKAQTDGKDALNSEQE QQCTTEEKNNTPSMRNGQNERIPPTRYAVELDSHWEGQKRRDANSSIFKYVEMHPGKY EISVWYNGRNQNYEGSNDIDISLQVLRPQMGVEKKIIQMSQKANEIRWERRSYEVTVD TYSLYKLSIAAAGTSDSLGGIITAFEVTYLDSF" gene 1620357..1621484 /gene="adhC" /locus_tag="AGROH133_06548" /db_xref="GeneID:10267390" CDS 1620357..1621484 /gene="adhC" /locus_tag="AGROH133_06548" /EC_number="1.1.1.1" /EC_number="1.1.1.284" /note="Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; Zn-dependent alcohol dehydrogenases, class III" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase class III" /protein_id="YP_004278921.1" /db_xref="GI:325293057" /db_xref="GeneID:10267390" /translation="MDVRAAVAIQAGKPLEVMTVQLEGPRAGEVLVEVKATGICHTDD FTLSGADPEGLFPAILGHEGAGIVVDVGPGVTSVKKGDHVIPLYTPECRECYSCTSRK TNLCTSIRATQGQGVMPDGTSRFSIGKDKIHHYMGCSTFSNFTVLPEIALAKINPDAP FDKVCYIGCGVTTGIGAVINTAKVEIGSTAIVFGLGGIGLNVLQGLRLAGADMIIGVD INNDRKAWGEKFGMTHFVNPKEVGDDIVPYLVNMTKRNGDLIGGADYTFDCTGNTKVM RQALESSHRGWGKSVIIGVAGAGQEISTRPFQLVTGRNWMGTAFGGARGRTDVPKIVD WYMEGKIQIDPMITHTMPLEDINKGFDLMHKGESIRGVVVY" misc_feature 1620357..1621481 /gene="adhC" /locus_tag="AGROH133_06548" /note="Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]; Region: AdhC; COG1062" /db_xref="CDD:31262" misc_feature 1620366..1621475 /gene="adhC" /locus_tag="AGROH133_06548" /note="class III alcohol dehydrogenases; Region: alcohol_DH_class_III; cd08300" /db_xref="CDD:176260" misc_feature order(1620474..1620476,1620480..1620482,1620507..1620515, 1620540..1620542,1620618..1620623,1620861..1620863, 1621239..1621241,1621311..1621313) /gene="adhC" /locus_tag="AGROH133_06548" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176260" misc_feature order(1620474..1620476,1620540..1620545,1620861..1620863) /gene="adhC" /locus_tag="AGROH133_06548" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176260" misc_feature order(1620477..1620482,1620861..1620863,1620873..1620875, 1620936..1620950,1621008..1621013,1621023..1621025, 1621161..1621166,1621176..1621181,1621233..1621238, 1621308..1621316,1621464..1621466) /gene="adhC" /locus_tag="AGROH133_06548" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:176260" misc_feature order(1620630..1620632,1620639..1620641,1620648..1620650, 1620672..1620674) /gene="adhC" /locus_tag="AGROH133_06548" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176260" misc_feature order(1620642..1620647,1620654..1620656,1620660..1620665, 1620669..1620671,1620675..1620677,1621116..1621118, 1621149..1621151,1621182..1621187,1621206..1621217, 1621242..1621244,1621251..1621274,1621281..1621289, 1621296..1621313) /gene="adhC" /locus_tag="AGROH133_06548" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176260" gene 1621761..1622519 /locus_tag="AGROH133_06549" /db_xref="GeneID:10267391" CDS 1621761..1622519 /locus_tag="AGROH133_06549" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278922.1" /db_xref="GI:325293058" /db_xref="GeneID:10267391" /translation="MSLISDHHQRQDLGPIGQLLMKGDDAVGVLLTIRSRLAETGRTV VNLSSWYVEPSSRWFAPRMLQMATSSEEDIFTDLTPSPEACKLNERLGFTTITNCTLF YPLPLKAFGPARVRLRPLAEVPQGTLSTATRDMLEDHARFGCIVAVMEADGSHYPLVF LKTITKRLPSARLIYCEDRQVAQRHISAIARHLLCKGRLALTMAASDEKRDAGGFAIL KSSPIQVKGAWNPRFINETYSELVLLPPWVLGRS" gene 1622608..1622871 /gene="acpP" /locus_tag="AGROH133_06550" /db_xref="GeneID:10267392" CDS 1622608..1622871 /gene="acpP" /locus_tag="AGROH133_06550" /note="Acyl carrier protein-like" /codon_start=1 /transl_table=11 /product="Acyl carrier protein" /protein_id="YP_004278923.1" /db_xref="GI:325293059" /db_xref="GeneID:10267392" /translation="MLSAKPREVDVSETIYSYLSQRFPAHAPFSADTQLLEGGVIDSL GFLELMIFLGEGFGIVLNDEHFTPENLSTPADLIAFVTQERRR" misc_feature <1622695..1622865 /gene="acpP" /locus_tag="AGROH133_06550" /note="Phosphopantetheine attachment site; Region: PP-binding; cl09936" /db_xref="CDD:195933" gene 1622868..1624400 /gene="fadD" /locus_tag="AGROH133_06551" /db_xref="GeneID:10267393" CDS 1622868..1624400 /gene="fadD" /locus_tag="AGROH133_06551" /EC_number="5.1.1.11" /note="AMP-dependent synthetase and ligase; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II" /codon_start=1 /transl_table=11 /product="long-chain fatty acid-CoA ligase" /protein_id="YP_004278924.1" /db_xref="GI:325293060" /db_xref="GeneID:10267393" /translation="MTTHILLHHLLTARAESGDEALVYKEKSLSYREFSEAAARCAAA LQEAGTERGDRVVIFLPRGIEECWSIFGVSMASCVFVPVNALLKAQQIRHIVADCGAK IVISSATMMDELNAAVEDLPEVTVLLAEQIDRRPPVPAKVSPSIGEDLAAILYTSGST GSPKGVMLSHRNLLAGARIVRTYLEITGKDRLLSILPFSFDYGLNQLLTAVEQGVTIV ISTFRLGDDIVRDLRDHAITGLAGVPTVWAILTRAAPLLAKTPLPQLRYITNSGGRVP QETVRALREKLPDTKIYLMYGLTEAFRSTFLPPDEIDRRPTSIGKAIPECEIFIVTAE GQRAKPGEPGILVHRGPTVSLGYWNRPEDTAKVLRPHPFIPAARGGETVCYSGDLAVE DEDGFFSFVARNDAMIKSSGYRISPTEVEESLMSTGLFQQVAVIGLPDPFAGEKVHAV ATAANENIDVSAALKKAAEMLAPFMIPRAIELVDRLPVTANGKVDYRALVRERMDNGA HG" misc_feature 1622904..1624373 /gene="fadD" /locus_tag="AGROH133_06551" /note="acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; Region: ligase_PEP_1; TIGR03098" /db_xref="CDD:188281" misc_feature <1623306..>1623773 /gene="fadD" /locus_tag="AGROH133_06551" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" misc_feature <1623747..1624364 /gene="fadD" /locus_tag="AGROH133_06551" /note="Acyl-protein synthetase, LuxE; Region: LuxE; cl10450" /db_xref="CDD:186997" gene 1624339..1625661 /gene="lysA" /locus_tag="AGROH133_06552" /db_xref="GeneID:10267394" CDS 1624339..1625661 /gene="lysA" /locus_tag="AGROH133_06552" /EC_number="4.1.1.20" /note="Orn/DAP/Arg decarboxylase 2" /codon_start=1 /transl_table=11 /product="Diaminopimelate decarboxylase" /protein_id="YP_004278925.1" /db_xref="GI:325293061" /db_xref="GeneID:10267394" /translation="MARWITARWCANGWIMAPTDKPQSHGPALAAAEFAVDENDLVIG GLAVRDIVAETGTPCFLYDASAMRRAYRDLATALSGFADIYYSVKANPLPAIVSLFRQ EGAGAEIASVGEYRAAIKAGIPPENIIFAGPGKRQAELLEVIESGTGEIHIESAEEIT RIEAIGRPVKASIRINPVPDAQAGAMRMGGKATAFGFDEEELENVLPLFRDIRHINLV GVHIYGGTQILDADMLVSQWRHSILLAARMAEMLGRPLETIDLGGGLGIPYFAGETPL DLAAVSAAIPDLKALVQAHPLIADAHIIVEPGRFLAGPGGIYVAEVNSVKTSRGTTFV VTDGGMHHHLAASGNLGQIVKRNYPIVAPAMMQADYEETATIVGPLCTPLDTLARNAA LPKLKAGDLLAILQSGAYGATASPSGFLSHPAAKEVLVENGAFEVIGR" misc_feature 1624438..1625628 /gene="lysA" /locus_tag="AGROH133_06552" /note="pyridoxal-dependent decarboxylase, exosortase system type 1 associated; Region: dCO2ase_PEP1; TIGR03099" /db_xref="CDD:132143" misc_feature 1624489..1625628 /gene="lysA" /locus_tag="AGROH133_06552" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase; Region: PLPDE_III_Btrk_like; cd06839" /db_xref="CDD:143506" misc_feature order(1624507..1624509,1624603..1624605,1624666..1624671, 1624675..1624680,1624744..1624746,1624798..1624800, 1624807..1624809,1624819..1624821,1624915..1624926, 1625305..1625316,1625335..1625337,1625341..1625343, 1625347..1625349,1625356..1625358,1625470..1625472, 1625476..1625484,1625491..1625493,1625575..1625583, 1625593..1625601) /gene="lysA" /locus_tag="AGROH133_06552" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143506" misc_feature order(1624597..1624599,1624603..1624605,1624660..1624662, 1624729..1624731,1624858..1624860,1625005..1625007, 1625014..1625016,1625125..1625130,1625254..1625265, 1625479..1625484,1625566..1625568,1625578..1625580, 1625593..1625595) /gene="lysA" /locus_tag="AGROH133_06552" /note="active site" /db_xref="CDD:143506" misc_feature order(1624597..1624599,1624603..1624605,1624660..1624662, 1624729..1624731,1624858..1624860,1625005..1625007, 1625014..1625016,1625125..1625130,1625254..1625265, 1625479..1625481,1625566..1625568) /gene="lysA" /locus_tag="AGROH133_06552" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143506" misc_feature order(1624603..1624605,1625479..1625481) /gene="lysA" /locus_tag="AGROH133_06552" /note="catalytic residues [active]" /db_xref="CDD:143506" misc_feature order(1625014..1625016,1625263..1625265,1625479..1625484, 1625566..1625568,1625578..1625580,1625593..1625595) /gene="lysA" /locus_tag="AGROH133_06552" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143506" gene complement(1625761..1626933) /gene="pabB" /locus_tag="AGROH133_06553" /db_xref="GeneID:10267395" CDS complement(1625761..1626933) /gene="pabB" /locus_tag="AGROH133_06553" /EC_number="2.6.1.85" /note="catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; Anthranilate/para-aminobenzoate synthases component I" /codon_start=1 /transl_table=11 /product="para-aminobenzoate synthase component I" /protein_id="YP_004278926.1" /db_xref="GI:325293062" /db_xref="GeneID:10267395" /translation="MAHAPYVLFRDDTTGTVTAFTEPEEIIVADEPEAFFAALKRMEQ LRRAGKYLAGYMSYEAGFLFEPKLADFAAEPRNVPFLRFGVFSGPQPDEGRFARPESL PDADAFLSDPAPVWSLEDYCQRFERLHGHLRRGDCYQGNLTMPVHARWSGDPLTAFWS LVERQPVKYGALVDLGGPVILSRSPELFFSVDGQGFIETHPMKGTTPRGANAQEDRAI IAAMLEDEKTLAENRMIVDLLRNDISRITEVGSLHVPRLFDIETYPTVHQMVSHVRAK LLPDVTVEDIFAALFPCGSVTGAPKMWAMKILRELEQTPRDAYCGAIGFMSPAGEMRF SVAIRTLTLFDGGRAIFNVGGGIVFDSDAEAEYDECLLKSKFAVGDRLLRGGSPFL" misc_feature complement(1625779..1626921) /gene="pabB" /locus_tag="AGROH133_06553" /note="aminodeoxychorismate synthase; Provisional; Region: PRK07508" /db_xref="CDD:181007" misc_feature complement(1625803..1626780) /gene="pabB" /locus_tag="AGROH133_06553" /note="chorismate binding enzyme; Region: Chorismate_bind; cl10555" /db_xref="CDD:195988" gene complement(1626970..1628319) /gene="tgt" /locus_tag="AGROH133_06554" /db_xref="GeneID:10267396" CDS complement(1626970..1628319) /gene="tgt" /locus_tag="AGROH133_06554" /EC_number="2.4.2.29" /note="Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); Queuine/archaeosine tRNA-ribosyltransferase" /codon_start=1 /transl_table=11 /product="queuine tRNA-ribosyltransferase" /protein_id="YP_004278927.1" /db_xref="GI:325293063" /db_xref="GeneID:10267396" /translation="MVGRDGHLHHARIPFPRGRYSDDQFPPAEIDAVHARFGFLRSRD DACRLCACHRNRIPFLFLWRFKPVVPEELMHDKFTFTLKATSGGARLGEVAMPRGVIR TPAFMPVGTVGTVKAMYLDQVRELGADIILGNTYHLMLRPGPERVARLGGLHELIRWP HPILTDSGGFQVMSLSGLRKLDEKGVTFKSHVDGSLHHMSPERSIEIQGMLDSDIQMQ LDECIALPAERKEIERAMEMSLRWAERCRVAFGEQPGKAMFGIVQGGDQPDLRIRSAE GLKQLDLKGYAVGGLAVGEPQDVMLGMLDITLPVLPTEKPRYLMGVGTPDDILKSVAR GIDMFDCVMPTRSGRHGLAFTRRGRVNIRNARHAEDMRPLDEQSNCPASRDYSRAYLH HLTRSNEALGGMLLSWHNLAYYQELMQGIRKSIEEGRFADFYAETIEMWARGDIDPI" misc_feature complement(1627003..1628091) /gene="tgt" /locus_tag="AGROH133_06554" /note="Queuine tRNA-ribosyltransferase; Region: TGT; cl00409" /db_xref="CDD:193805" gene complement(1628100..1629224) /gene="queA" /locus_tag="AGROH133_06555" /db_xref="GeneID:10267397" CDS complement(1628100..1629224) /gene="queA" /locus_tag="AGROH133_06555" /EC_number="5.-.-.-" /note="Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuine synthetase)" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine tRNA ribosyltransferase" /protein_id="YP_004278928.1" /db_xref="GI:325293064" /db_xref="GeneID:10267397" /translation="MPCRAGFDISRALAMRVDLFDFDLPEANIALRPANPRDSARLLV VDPNADHMEDRIVSDLTSFLKPGDALVFNDTRVIPAQLEGVRLREGAPETAVSATLHM RADQSRWKAFARPGKRIKQGDRIRFGYERDNACGLAHLEATVEEKGEEGEITLLFDVS GPVLDEAIASVGHIPLPPYIAAKRPEDAQDQTDYQTIYAREKGAVAAPTAGLHFTPDL FAALDEAGIERHFVTLHVGAGTFLPVKADDTDDHKMHFEIGHVSQETAAKLNAVKARG GRIVSVGTTSLRLIESATDENGVIQPWSGATGIFITPGYRFRAVDILMTNFHLPKSTL FMLVSAFCGLETMRAAYAHAIETGYRFYSYGDSSLLFRKN" misc_feature complement(1628103..1629182) /gene="queA" /locus_tag="AGROH133_06555" /note="Queuosine biosynthesis protein; Region: Queuosine_synth; cl00523" /db_xref="CDD:186057" misc_feature complement(1628112..1629182) /gene="queA" /locus_tag="AGROH133_06555" /note="S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional; Region: queA; PRK00147" /db_xref="CDD:178900" gene complement(1629377..1629886) /gene="ppiB1" /locus_tag="AGROH133_06556" /db_xref="GeneID:10267398" CDS complement(1629377..1629886) /gene="ppiB1" /locus_tag="AGROH133_06556" /EC_number="5.2.1.8" /note="Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family" /codon_start=1 /transl_table=11 /product="peptidyl prolyl cis-trans isomerase" /protein_id="YP_004278929.1" /db_xref="GI:325293065" /db_xref="GeneID:10267398" /translation="MAEIKDPENTIIMETTTGKVVIQLLPEVAPGHVARIKELVSEGA YDGVVFHRVIEDFMAQTGDVKFGKKGSESFNPARAGMGGSEKPDLKAEFSAISHVRGT CSMARSQSPNSANSQFFICFTDSPWLNKQYTVWGQVIEGMEAIDKVKRGEPVKDPDSI VSMKLASAA" misc_feature complement(1629386..1629853) /gene="ppiB1" /locus_tag="AGROH133_06556" /note="cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the...; Region: cyclophilin; cd00317" /db_xref="CDD:29390" misc_feature complement(order(1629491..1629493,1629503..1629508, 1629530..1629532,1629536..1629538,1629566..1629571, 1629707..1629709,1629713..1629718,1629725..1629727, 1629731..1629733)) /gene="ppiB1" /locus_tag="AGROH133_06556" /note="active site" /db_xref="CDD:29390" gene complement(1629923..1630492) /gene="ppiB2" /locus_tag="AGROH133_06557" /db_xref="GeneID:10267399" CDS complement(1629923..1630492) /gene="ppiB2" /locus_tag="AGROH133_06557" /EC_number="5.2.1.8" /note="Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase" /protein_id="YP_004278930.1" /db_xref="GI:325293066" /db_xref="GeneID:10267399" /translation="MKLVRFAFAGALFAGALAASTFASAAEFLTVQLKDGPVVIELMP EVAPKHVAQIEALAKKGAYDNVAFHRVIDGFMAQTGDVQYGNMEKGFNAQRAGTGGSD LADIPAEFSKTPFTRGVVGMARSSDPNSANSQFFIMFADGPFLNGQYTVVGKVVSGME AVDKIKRGAGGNGEVSNPDRMIKVTVGKK" misc_feature complement(1629938..1630402) /gene="ppiB2" /locus_tag="AGROH133_06557" /note="cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the...; Region: cyclophilin; cd00317" /db_xref="CDD:29390" misc_feature complement(order(1630046..1630048,1630058..1630063, 1630085..1630087,1630091..1630093,1630121..1630126, 1630259..1630261,1630265..1630270,1630277..1630279, 1630283..1630285)) /gene="ppiB2" /locus_tag="AGROH133_06557" /note="active site" /db_xref="CDD:29390" gene complement(1630522..1631016) /gene="coaD" /locus_tag="AGROH133_06560" /db_xref="GeneID:10267400" CDS complement(1630522..1631016) /gene="coaD" /locus_tag="AGROH133_06560" /EC_number="2.7.7.3" /note="Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA" /codon_start=1 /transl_table=11 /product="Phosphopantetheine adenylyltransferase" /protein_id="YP_004278931.1" /db_xref="GI:325293067" /db_xref="GeneID:10267400" /translation="MTIAFYPGSFDPMTNGHLDVLIQALNVASKVIVAVGIHPGKAPL FSFEERATLISRALSESLPGEAARVEVVSFDNLVVDAARQHGARLLLRGLRDGTDLDY EMQMAGMNRQMAPDIQTVFLPAGTSSRPITATLVRQIAAMGGNVDAFVPKAVLEALNA KLKR" misc_feature complement(1630549..1631016) /gene="coaD" /locus_tag="AGROH133_06560" /note="Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]; Region: NadD; COG1057" /db_xref="CDD:31257" misc_feature complement(1630537..1631010) /gene="coaD" /locus_tag="AGROH133_06560" /note="Phosphopantetheine adenylyltransferase; Region: PPAT; cd02163" /db_xref="CDD:173914" misc_feature complement(order(1630624..1630626,1630633..1630635, 1630645..1630647,1630687..1630689,1630699..1630701, 1630708..1630713,1630732..1630734,1630738..1630743, 1630783..1630791,1630894..1630896,1630909..1630911, 1630957..1630959,1630966..1630971,1630987..1631001)) /gene="coaD" /locus_tag="AGROH133_06560" /note="active site" /db_xref="CDD:173914" misc_feature complement(1630966..1630977) /gene="coaD" /locus_tag="AGROH133_06560" /note="(T/H)XGH motif; other site" /db_xref="CDD:173914" gene 1631042..1631326 /locus_tag="AGROH133_06561" /db_xref="GeneID:10267401" CDS 1631042..1631326 /locus_tag="AGROH133_06561" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278932.1" /db_xref="GI:325293068" /db_xref="GeneID:10267401" /translation="MPPFVTEMGAAQDFYNPDALPVRSEQRMNAPFSAVSGLIYINTR HRETEMPLTSLSPRRNENAGLYDRLFGHRIIRSRVSFPRMRPVAGFLNAR" gene 1631390..1631614 /locus_tag="AGROH133_06562" /db_xref="GeneID:10267402" CDS 1631390..1631614 /locus_tag="AGROH133_06562" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278933.1" /db_xref="GI:325293069" /db_xref="GeneID:10267402" /translation="MIGRGALVSNQRNRQMFVREKQSTSAKISVISTAWTVLVIAMVA TTFSLYDQKPAAQGPDYPQMTARYQSMTYY" gene 1631656..1631790 /locus_tag="AGROH133_06564" /db_xref="GeneID:10267403" CDS 1631656..1631790 /locus_tag="AGROH133_06564" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278934.1" /db_xref="GI:325293070" /db_xref="GeneID:10267403" /translation="MFTFLTLLLALISIMFVTSMISAVAEMRREDEEFKASVRRNRAF " gene 1632061..1633953 /gene="ppiD" /locus_tag="AGROH133_06567" /db_xref="GeneID:10267404" CDS 1632061..1633953 /gene="ppiD" /locus_tag="AGROH133_06567" /EC_number="5.2.1.8" /note="Parvulin-like peptidyl-prolyl isomerase" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase D" /protein_id="YP_004278935.1" /db_xref="GI:325293071" /db_xref="GeneID:10267404" /translation="MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLVTSNSHAVMT VGDQTVSPQEFRLAYQRQVSDLSRQFGARLTTEQAKAFGIDRQVFSQLAAGASLDELA SKMNLGLSEDRLANLIAEDPAFKSVNGQFDRTLFTERLRNSGLREDDYIKERSKVAVR SQIVEAVSDGFKAPQVLVDALKQYRNEQRSVDYVILSNAVIAPVKAPGDDVLAPWFET NKAKYRAPEFRKFTYVKLEPSDIADQASVTDAQIADYYNSHKDSFRTAGRRTVEQLTF PEKEMAEAAAEQIRLGNTTYDQVVKDQGKTASDVTLGEFTKDTIPDQSIADAAFAVQK DGGVSPVVAGSFGPVILRITGIKPETTRTLEEAKEDIRKDLATAAAAEEVTNVHDRYE DLRAGGSSLADAAKQLNLKPVTIDAIDAAGLDEKGDAIQDLPSPQLAQEVFKTEPGTE ALPINLGREGYIWFDVDQIIPARDRTLAEVRDDVVADWTAEQQRTALATKADELKARV EKGETLAAVAGELGLAVEQKSGLRRTSEDAIFGRQTITAVFSGAEGMTGTAADADGSS RILFKVTAVDTNAPADALANDDQQFAAIARAAGDDMLDQMVNRLQNDYGVTINQALAD QAMVGF" misc_feature 1632061..1633578 /gene="ppiD" /locus_tag="AGROH133_06567" /note="periplasmic folding chaperone; Provisional; Region: PRK10788" /db_xref="CDD:182731" misc_feature 1632895..1633125 /gene="ppiD" /locus_tag="AGROH133_06567" /note="PPIC-type PPIASE domain; Region: Rotamase; cl08278" /db_xref="CDD:195679" gene 1633970..1635004 /gene="trpD" /locus_tag="AGROH133_06571" /db_xref="GeneID:10267405" CDS 1633970..1635004 /gene="trpD" /locus_tag="AGROH133_06571" /EC_number="2.4.2.18" /note="Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate" /codon_start=1 /transl_table=11 /product="Anthranilate phosphoribosyltransferase" /protein_id="YP_004278936.1" /db_xref="GI:325293072" /db_xref="GeneID:10267405" /translation="MAELKPLIAKVANGESLNREESRAAFDILMSGEATPSQIGGFLM ALRVRGETVDEIVGAVSSMRARMLPVSAPENAIDIVGTGGDGIGTYNISTLASIIVAG TGLPVAKHGNRALSSKSGTADALSALGVKLDIGPDLIARCISEAGLGFMFAQLHHSAM RHVGPSRVELGTRTIFNLLGPLSNPAGAKRQLLGVFSPRWLVPLAEVLRDLGSESIWV VHGDGMDEVTTTGVTHVAALENGKIRTFDLTPKDFGVEPASMADLKGGDGIANAAALR EVLSGKRNAYRDVSLCNAAAALVIAGKAETLGEAMTTVSQALDSGAAAAALDRLVAVS NETVSGQADH" misc_feature 1633979..1634902 /gene="trpD" /locus_tag="AGROH133_06571" /note="anthranilate phosphoribosyltransferase; Provisional; Region: trpD; PRK00188" /db_xref="CDD:178920" misc_feature 1633979..1634170 /gene="trpD" /locus_tag="AGROH133_06571" /note="Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885" /db_xref="CDD:145834" misc_feature 1634237..1634899 /gene="trpD" /locus_tag="AGROH133_06571" /note="Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591" /db_xref="CDD:144256" gene 1635024..1635839 /gene="trpC" /locus_tag="AGROH133_06572" /db_xref="GeneID:10267406" CDS 1635024..1635839 /gene="trpC" /locus_tag="AGROH133_06572" /EC_number="4.1.1.48" /note="involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water" /codon_start=1 /transl_table=11 /product="Indole-3-glycerol phosphate synthase" /protein_id="YP_004278937.1" /db_xref="GI:325293073" /db_xref="GeneID:10267406" /translation="MSDILKNIEIYKREEIAAAKARVSLADLKAMAAGQTAPRGFYKA LRTKQAEGKFGLIAEIKKASPSKGLIRPDFDPPALAAAYEAGGAACLSVLTDTPSFQG APEFLTAARNACTLPALRKDFMFDTYQVHEARAWGADCILLIMASLSNDEAKRLEDEA FSLGMDVLVEVHDAEETERALKLASPLLGINNRNLRTFEVSLETSEKLAGLVPADKLL VGESGIFTYEDCQRLEKSGISTFLVGESLMRKDDVTAATKTLLTGQSGVLAAE" misc_feature 1635144..1635803 /gene="trpC" /locus_tag="AGROH133_06572" /note="Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the...; Region: IGPS; cd00331" /db_xref="CDD:73363" misc_feature order(1635198..1635200,1635204..1635206,1635213..1635221, 1635321..1635323,1635384..1635386,1635390..1635392, 1635453..1635455,1635531..1635533,1635594..1635596, 1635600..1635602,1635606..1635608,1635687..1635692, 1635753..1635758) /gene="trpC" /locus_tag="AGROH133_06572" /note="active site" /db_xref="CDD:73363" misc_feature order(1635198..1635200,1635204..1635206,1635384..1635386, 1635531..1635533,1635594..1635596) /gene="trpC" /locus_tag="AGROH133_06572" /note="ribulose/triose binding site [chemical binding]; other site" /db_xref="CDD:73363" misc_feature order(1635204..1635206,1635690..1635692,1635753..1635758) /gene="trpC" /locus_tag="AGROH133_06572" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73363" misc_feature order(1635216..1635218,1635321..1635323,1635600..1635602, 1635606..1635608) /gene="trpC" /locus_tag="AGROH133_06572" /note="substrate (anthranilate) binding pocket [chemical binding]; other site" /db_xref="CDD:73363" misc_feature order(1635321..1635323,1635384..1635386,1635390..1635392, 1635453..1635455,1635606..1635608) /gene="trpC" /locus_tag="AGROH133_06572" /note="product (indole) binding pocket [chemical binding]; other site" /db_xref="CDD:73363" gene 1635847..1636338 /gene="moaC" /locus_tag="AGROH133_06573" /db_xref="GeneID:10267407" CDS 1635847..1636338 /gene="moaC" /locus_tag="AGROH133_06573" /note="MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; Molybdenum cofactor biosynthesis enzyme" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein C" /protein_id="YP_004278938.1" /db_xref="GI:325293074" /db_xref="GeneID:10267407" /translation="MSEATKLTHIDASGEAHMVDVGDKAETVRVAVAEGFVKMKPETL ALIRDGNAKKGDVIGTARLAGIMAAKQTANLIPLCHPLMLTKVAVDITEDAALPGLRV EAMVKLSGKTGVEMEALTAVSIACLTIYDMAKAADKAMEIVNIRLLEKSGGKSGDFRR QET" misc_feature 1635898..1636317 /gene="moaC" /locus_tag="AGROH133_06573" /note="MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a...; Region: MoaC_PE; cd01420" /db_xref="CDD:29626" misc_feature order(1635898..1635909,1636012..1636089,1636096..1636116, 1636270..1636305) /gene="moaC" /locus_tag="AGROH133_06573" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:29626" misc_feature order(1636006..1636014,1636060..1636074,1636255..1636263) /gene="moaC" /locus_tag="AGROH133_06573" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29626" misc_feature order(1636006..1636008,1636054..1636056,1636075..1636077, 1636081..1636086,1636180..1636182,1636189..1636197, 1636204..1636206,1636237..1636239,1636246..1636248) /gene="moaC" /locus_tag="AGROH133_06573" /note="putative active site [active]" /db_xref="CDD:29626" gene 1636339..1637556 /gene="moeA" /locus_tag="AGROH133_06574" /db_xref="GeneID:10267408" CDS 1636339..1637556 /gene="moeA" /locus_tag="AGROH133_06574" /note="Molybdopterin binding, MoeA N-terminal region (domain I and II); Molybdopterin biosynthesis enzyme" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein" /protein_id="YP_004278939.1" /db_xref="GI:325293075" /db_xref="GeneID:10267408" /translation="MKPLLPVDEAVTRLLDAAVPVVDSETLPLAECDGRVLAADLAAR LTQPPFDASAMDGYALRSADAPQIGSVLTVIGQAAAGHAFAGTVGKGEAVRIFTGAPV PAGADAILIQEDAELLGEGKIRTAFDITAGRHIRPRGQDFAEGDTVLKSGRELGFTDL TVAAAMNHATLAVYRKPLVAILATGDELLPPGSTPLPAQIIASNTFGVAALARAAGAE VLDLGIIPDNDTLIRAAIGKAVAAKADVLVTLGGASVGDHDLVQAALKAEGMQLDFWR IAMRPGKPLMVGAIDAMQVLGLPGNPVASLVCGLLFLEPLLHRIARRIPPQRVTTART ATPLKANDHRQDYLRARFSADDNGALVAQAYAKQDSSMMNILAHSDGLIVRPPNAPAV DAGAECSVIRLRA" misc_feature 1636339..1637550 /gene="moeA" /locus_tag="AGROH133_06574" /note="Molybdopterin biosynthesis enzyme [Coenzyme metabolism]; Region: MoeA; COG0303" /db_xref="CDD:30651" misc_feature 1636360..1637547 /gene="moeA" /locus_tag="AGROH133_06574" /note="MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887" /db_xref="CDD:58168" misc_feature order(1636426..1636428,1636759..1636761,1636804..1636815, 1636819..1636821,1636828..1636833,1636837..1636839, 1636939..1636941,1636945..1636947,1636954..1636956, 1637449..1637451,1637533..1637535) /gene="moeA" /locus_tag="AGROH133_06574" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:58168" misc_feature order(1636888..1636893,1636897..1636899,1637017..1637019, 1637092..1637094) /gene="moeA" /locus_tag="AGROH133_06574" /note="putative functional site; other site" /db_xref="CDD:58168" misc_feature order(1637092..1637100,1637233..1637238,1637248..1637250, 1637257..1637259) /gene="moeA" /locus_tag="AGROH133_06574" /note="putative MPT binding site; other site" /db_xref="CDD:58168" gene 1638057..1639127 /locus_tag="AGROH133_06575" /db_xref="GeneID:10267409" CDS 1638057..1639127 /locus_tag="AGROH133_06575" /note="diguanylate cyclase (GGDEF) domain; FOG: GGDEF domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004278940.1" /db_xref="GI:325293076" /db_xref="GeneID:10267409" /translation="MNTASTPKSTGPDIAGQIAYAMRSMGVSPIPRNYSLFYEAYIGS NPALTRDLAALGNRVTQEDLDELSTRYGEGNPIASIDDAHEKLRRELEALLGTLRREQ SSIENYNRILGETRQRIDDKTVSSTNILKNAVSLLAEATGSKIIDGEKAFNDVNRHAE EMQQVRLELDEYKRIANTDSLTRLSNRRAFDDRLASVYNSSIGLQYTTLILLDIDHFK RINDTFGHPVGDKILATVASVIRANVRKDGFVARSGGEEFAIILDGNTPEEVMVICER IRLSLESTPFRNSRSGADYGTVTISIGFASASQANNPGELYGHADMALYHAKETGRNR SVIYEDGMQKNYIGKNWLIYRT" misc_feature 1638585..1639064 /locus_tag="AGROH133_06575" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1638693..1638695,1638822..1638824) /locus_tag="AGROH133_06575" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1638708..1638710,1638717..1638722,1638732..1638734, 1638744..1638746,1638810..1638812,1638816..1638827) /locus_tag="AGROH133_06575" /note="active site" /db_xref="CDD:143635" misc_feature order(1638798..1638800,1638882..1638884) /locus_tag="AGROH133_06575" /note="I-site; other site" /db_xref="CDD:143635" gene complement(1639224..1639832) /locus_tag="AGROH133_06576" /db_xref="GeneID:10267410" CDS complement(1639224..1639832) /locus_tag="AGROH133_06576" /note="FMN-binding split barrel, related, Pyridoxamine 5'-phosphate oxidase; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase" /codon_start=1 /transl_table=11 /product="pyridoxine biosynthesis protein" /protein_id="YP_004278941.1" /db_xref="GI:325293077" /db_xref="GeneID:10267410" /translation="MTVIRTVEELKAIYDGTSEASIAKVTATLTAEYRQMIEASPFLA LATVGPEGMDCSPRGDKGGVVRVADDRTVLLPDWRGNNRIDSLLNIVRDPRVALMFLI PGSNTTMRINGRALVSVAPDLLQSFEMDGKHPRTVIVVEIDEVYFQCARALMRSELWN PDNFVEPASLPTPGSLLKAAKAEFDQETYDREWAVRAAKTMW" misc_feature complement(1639227..1639811) /locus_tag="AGROH133_06576" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" gene complement(1639885..1641696) /gene="kefB2" /locus_tag="AGROH133_06577" /db_xref="GeneID:10267411" CDS complement(1639885..1641696) /gene="kefB2" /locus_tag="AGROH133_06577" /note="Sodium/hydrogen exchanger family; Kef-type K+ transport systems, membrane components" /codon_start=1 /transl_table=11 /product="Glutathione-regulated potassium-efflux system protein kefB" /protein_id="YP_004278942.1" /db_xref="GI:325293078" /db_xref="GeneID:10267411" /translation="MAVEANGNDLAQVVVLLAAGVVAAPIFKRIGLGSVLGYLAAGLV IGPYGFGFFSDSQAILHIAELGVVMFLFIIGLEMQPSRLWSMRQDIFGLGALQVLVCM AGLTMVGVSLGFPLIMSFVAGTGFVLTSTAIVMQMLQERNSMSSLKGQRIIAILLFED LAIVPLLALVAFLGAGGEHVTPSERWISVGIALAAVGALILAGRYLLNPFFRLLAASG AREVMTAAALLVVLGSALLMQVSGLSMAMGAFLAGVLLSESSFRHQLEADIEPFRGIL LGLFFLGVGMAIDLAVIASNWQLVVVSVAGYMLLKAFLIYGVARALGTTRRESLERAV LMAQGGEFAFVLYSAAVSAGILDREANAILTATIIISMVLTPLMVILHDRLVPAAVPK TDDLDVPENVEGSILLIGFGRFGQIVSQPLLARGYTLSLIDKDADFVRDAAEFGFKVY YGDGSRAEILHAAGASTARAVLICVDDKEAAVRIAEIVKHEFPLVPVLARAYDRGHAI DLVKAGVDYQIRETLESAMNFSEEVLGAMGEEREDAARLVEEFRDRDEERFAMEVVGG IYAGRSLIRGNAQPADLVAARTARERAEREKAEAAEE" misc_feature complement(1640884..1641624) /gene="kefB2" /locus_tag="AGROH133_06577" /note="Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482" /db_xref="CDD:164194" misc_feature complement(1640560..1641621) /gene="kefB2" /locus_tag="AGROH133_06577" /note="Sodium/hydrogen exchanger family; Region: Na_H_Exchanger; pfam00999" /db_xref="CDD:189798" misc_feature complement(1640146..1640481) /gene="kefB2" /locus_tag="AGROH133_06577" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(1641919..1642287) /locus_tag="AGROH133_06590" /db_xref="GeneID:10267412" CDS complement(1641919..1642287) /locus_tag="AGROH133_06590" /note="Protein of unknown function DUF971; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278943.1" /db_xref="GI:325293079" /db_xref="GeneID:10267412" /translation="MSDAWPTELLVSKDRRQLTVSFDDGSVYRLGAEMLRVLSPSAEV QGHGPGQKVTVPGKRNVTIRSMMATGNYAVRIVFDDGHDSGIFTWRYLKELGETGDAS FADYERQLAEKGLSREPLSR" misc_feature complement(1641931..1642284) /locus_tag="AGROH133_06590" /note="Protein of unknown function (DUF971); Region: DUF971; cl01414" /db_xref="CDD:194131" gene 1642373..1643470 /gene="moaA" /locus_tag="AGROH133_06591" /db_xref="GeneID:10267413" CDS 1642373..1643470 /gene="moaA" /locus_tag="AGROH133_06591" /note="together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; Molybdenum cofactor biosynthesis enzyme" /codon_start=1 /transl_table=11 /product="Molybdenum cofactor biosynthesis protein A" /protein_id="YP_004278944.1" /db_xref="GI:325293080" /db_xref="GeneID:10267413" /translation="MPGNLVPGASRSEDGDVNSFPGSLERAQSLTENNAPMVDPFGRS ITYLRVSVTDRCDFRCTYCMSEHMTFLPKKDLLTLEELDRLCSVFIQRGVRKLRLTGG EPLVRKNIMMLVRNLGRHIGTGALDELTLTTNGSQLAKFAAELADCGVGRINVSLDTL DPQKFREITRWGDIDRVMEGLDAAQAAGIKIKLNAVALKDFNETEIPELMRFAHGRGM DLTVIETMPMGEIEEDRTDRYLPLSRLRADLEQSFTLVDNDYQTGGPARYVTVKETGG RLGFITPMTHNFCESCNRVRLTCTGTLYMCLGQDDAADLRTALRASDSDAYLSGAIDE AILRKPKGHDFIIDRTHKRPAVARHMSVTGG" misc_feature 1642475..1643467 /gene="moaA" /locus_tag="AGROH133_06591" /note="molybdenum cofactor biosynthesis protein A; Provisional; Region: PRK13361" /db_xref="CDD:184000" misc_feature 1642520..1643122 /gene="moaA" /locus_tag="AGROH133_06591" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cd01335" /db_xref="CDD:100105" misc_feature order(1642538..1642540,1642544..1642546,1642550..1642552, 1642556..1642561,1642670..1642672,1642676..1642681, 1642766..1642774,1642838..1642840,1642958..1642960, 1643051..1643056) /gene="moaA" /locus_tag="AGROH133_06591" /note="FeS/SAM binding site; other site" /db_xref="CDD:100105" misc_feature 1643024..1643404 /gene="moaA" /locus_tag="AGROH133_06591" /note="Molybdenum Cofactor Synthesis C; Region: Mob_synth_C; pfam06463" /db_xref="CDD:115139" gene 1643624..1644592 /locus_tag="AGROH133_06592" /db_xref="GeneID:10267414" CDS 1643624..1644592 /locus_tag="AGROH133_06592" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004278945.1" /db_xref="GI:325293081" /db_xref="GeneID:10267414" /translation="MALTDNTRGALLMALAMASFTANDALTKSVTPYINTGQIMFVRG IMTVVLIYIAARHFDALRPLKTLMRPIIILRCLCEVTAAVLYLTALGLIEFSNASAIL QSLPLIVTLGAALFLREPVGWRRWAAIIVGFIGVLVIIRPGPEGFTSGALLVVASLAV TAARDLLTRKMYADVPSLAVTFVTASVNMAVGGLLIQPFGGWQPMNFMILSHLAGSAV LVLVGYQAIILAMRTGEISFVAPFRYTSLLWGFMIGVFFFNEKIDSFTIVGAMIVIGS GLYTFYRESLRKRSQMAKRSAATPTAATTVRPASVTKAAFTEKAGE" misc_feature 1643633..1644484 /locus_tag="AGROH133_06592" /note="Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:31041" misc_feature 1644119..1644469 /locus_tag="AGROH133_06592" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene 1644594..1645793 /locus_tag="AGROH133_06602" /db_xref="GeneID:10267415" CDS 1644594..1645793 /locus_tag="AGROH133_06602" /note="Drug resistance transporter Bcr/CflA subfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004278946.1" /db_xref="GI:325293082" /db_xref="GeneID:10267415" /translation="MKNARFLDRTTPPHIITLVVIAGVAALCMNLFLPSLAAMALHFE TDYAVMQFAVSGYLAATACLQLLIGPLSDLFGRRPVMLASIAMMIVATLVCMLAPDIT VFMFGRVAQAAVVSGFVLARAIVRDMVPMEQAASMIGYVTMGMSVVPMVGPTVGGLLN DISGWQSSFALLALLGVGILVLAWFDLGETNHNRSASFSQQFHAWPELLRSRLFWGYA LTSTFSSGMFFSFLGGAPFVGSVLYGLAPAMLGLQFFFMASGYMLGNFVSGRYASQIG ITRMMLSGNVVAIAGIVAAIALISTGAESPYAFFVPLALIGVGNGVTLPSANAGMVSV QPHLAGSASGLGGAMTIGGGAALSVLASSVLSKEDGTWPLLLVMLATGLVALLTTYIV RLQEKRQ" misc_feature 1644636..1645604 /locus_tag="AGROH133_06602" /note="drug resistance transporter, Bcr/CflA subfamily; Region: efflux_Bcr_CflA; TIGR00710" /db_xref="CDD:162006" misc_feature 1644636..>1645100 /locus_tag="AGROH133_06602" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene 1645790..1646416 /gene="mobA" /locus_tag="AGROH133_06616" /db_xref="GeneID:10267416" CDS 1645790..1646416 /gene="mobA" /locus_tag="AGROH133_06616" /note="Links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis" /codon_start=1 /transl_table=11 /product="Molybdopterin-guanine dinucleotide biosynthesis protein A" /protein_id="YP_004278947.1" /db_xref="GI:325293083" /db_xref="GeneID:10267416" /translation="MTARFEIPGLVLAGGLSRRMGTNKATVILGDEPLLSHVVRRIAP QVSDVTINAANGWAESYGLPLLPDTVNGHAGPLAGVLAGMRHFQNHHVRKSHFLTVPA DSPFFPEDLVDRLCEHMAEDAIVIAASSGQLHPVFALWPVALADDLEEWLKNDANRRI RAYLARHVTIGIAFPPLETAKGSLDPFFNINTPDELALARSYLESMEP" misc_feature 1645808..1646389 /gene="mobA" /locus_tag="AGROH133_06616" /note="molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed; Region: mobA; PRK00317" /db_xref="CDD:178976" misc_feature 1645808..1646377 /gene="mobA" /locus_tag="AGROH133_06616" /note="MobA catalyzes the formation of molybdopterin guanine dinucleotide; Region: MobA; cd02503" /db_xref="CDD:133000" misc_feature order(1645823..1645831,1645835..1645837,1645859..1645861, 1645943..1645945,1645991..1645993,1646012..1646017, 1646024..1646026,1646090..1646092,1646096..1646098) /gene="mobA" /locus_tag="AGROH133_06616" /note="GTP binding site [chemical binding]; other site" /db_xref="CDD:133000" gene 1646413..1646928 /gene="mobB" /locus_tag="AGROH133_06617" /db_xref="GeneID:10267417" CDS 1646413..1646928 /gene="mobB" /locus_tag="AGROH133_06617" /note="Molybdopterin-guanine dinucleotide biosynthesis MobB region; Molybdopterin-guanine dinucleotide biosynthesis protein" /codon_start=1 /transl_table=11 /product="molybdopterin-guanine dinucleotide biosynthesis protein B" /protein_id="YP_004278948.1" /db_xref="GI:325293084" /db_xref="GeneID:10267417" /translation="MMSQKVFGIAGWKNSGKTGLAVRIVTELTARGYRVSTIKHAHHD FDIDKVGADSWRHRQAGAHEVTIVSGTRFAIMHELRGEAEPSFEEILARLAPCDLVLI EGYKYEPVPKIEARRLEAAKTEPLAGSDPHIIAIAADHAVTDTTLPVFDLDDTATIAD FIEKTVGLVRA" misc_feature 1646422..1646901 /gene="mobB" /locus_tag="AGROH133_06617" /note="Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa...; Region: MobB; cd03116" /db_xref="CDD:48380" misc_feature order(1646443..1646445,1646458..1646466) /gene="mobB" /locus_tag="AGROH133_06617" /note="Walker A motif; other site" /db_xref="CDD:48380" gene complement(1647119..1648804) /gene="lppB" /locus_tag="AGROH133_06618" /db_xref="GeneID:10267418" CDS complement(1647119..1648804) /gene="lppB" /locus_tag="AGROH133_06618" /note="Peptidase family M23; Membrane proteins related to metalloendopeptidases" /codon_start=1 /transl_table=11 /product="lipoprotein precursor protein" /protein_id="YP_004278949.1" /db_xref="GI:325293085" /db_xref="GeneID:10267418" /translation="MGLARSEICAGSTSMRRVGVSVDRVMRMRHSSKIGKSVAKMFAA ALLASVATGCSSDATRFSGLFSSGPDRMTTASIPARQGGGAYGQAPVPQGDMNGGYAS AAPQGGYANQNMAANSYPSSGGYGGGVQPSTARSASASPVQRSELSAPPAVASRDPST RNEAMAQPFPSAQRPAAPSLAAPAQQAAAPVADNLTTATVRSDKNGWHTDGASSVTLR PGESIATISNRYGVPEKELLRVNGLKTAASAQAGQSILIPKFGQVRNAAKAAAGDIAL NRNGDEPNPLRGPDQKVAVLPSQSVARDKVSAENGKLTPPGGKPVPPAGGYKVQPGDS LAKIARENGVSVAALKAANGISTESIRVGQTLAMPGASTDAIKTASVPAKEAAKAVET ASAKPEPYKAPAAAATVPSAPAATASVGDIEKKSDMASLAPESTGIGKYRWPVRGAVI NNFGDNVEGSRNDGINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDGKVTV YGNAANLDVQRGQKVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFLE" misc_feature complement(1648031..1648162) /gene="lppB" /locus_tag="AGROH133_06618" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cl00107" /db_xref="CDD:153515" misc_feature complement(1647137..1647820) /gene="lppB" /locus_tag="AGROH133_06618" /note="Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739" /db_xref="CDD:31082" misc_feature complement(1647698..1647820) /gene="lppB" /locus_tag="AGROH133_06618" /note="Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118" /db_xref="CDD:29017" misc_feature complement(order(1647782..1647784,1647791..1647793, 1647806..1647808,1647815..1647817)) /gene="lppB" /locus_tag="AGROH133_06618" /note="putative peptidoglycan binding site; other site" /db_xref="CDD:29017" misc_feature complement(1647137..1647427) /gene="lppB" /locus_tag="AGROH133_06618" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene complement(1649030..1649683) /gene="pcm" /locus_tag="AGROH133_06619" /db_xref="GeneID:10267419" CDS complement(1649030..1649683) /gene="pcm" /locus_tag="AGROH133_06619" /EC_number="2.1.1.77" /note="catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; Protein-L-isoaspartatecarboxylmethyltransferase" /codon_start=1 /transl_table=11 /product="L-isoaspartyl protein carboxyl methyltransferase" /protein_id="YP_004278950.1" /db_xref="GI:325293086" /db_xref="GeneID:10267419" /translation="MKSAMVEKEGFAALVLRLRGEGISDLDLLTAVEQTPRSRFVPPQ FAADAYSSRTIPIDCGAFMEGADMAVKILARLQLKPGQRVLEIGTGSGFMTAIIARRV ERVFSLERYKTLVQQAQNCLDDLSIRNVVIRQADGSNGLVGEGTFDRIVATAAFTTMP RFFAEQIVSGGMMIAPIILEDGRCVMTRFSKTGSRFEKEELFETPYLPLGSHIARHL" misc_feature complement(1649042..1649671) /gene="pcm" /locus_tag="AGROH133_06619" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1649680..1650450) /gene="surE" /locus_tag="AGROH133_06620" /db_xref="GeneID:10267420" CDS complement(1649680..1650450) /gene="surE" /locus_tag="AGROH133_06620" /EC_number="3.1.3.2" /note="catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; Predicted acid phosphatase" /codon_start=1 /transl_table=11 /product="stationary phase survival protein SurE" /protein_id="YP_004278951.1" /db_xref="GI:325293087" /db_xref="GeneID:10267420" /translation="MRILLTNDDGIHAEGLAVLERIARTLSDDVWIVAPETDQSGLAH SLTLSEPLRLRKVSDKHFALRGTPTDCVIMGIREVLPEKPDLVLSGVNAGANMADDVT YSGTIAGAIEGTLQGVRSFALSQAFSHSEGRVVPWEVTETHAPDLLRKLMNVELPDGT FLNLNFPNCAPDDVQGVSVTGQGKLDFGLTVEERQDGRGLPYYWLRFGERLGTFLEGT DIHALKHGKISVTPLKLDLTDYTVKDRVAQALGFGVAD" misc_feature complement(1649698..1650450) /gene="surE" /locus_tag="AGROH133_06620" /note="Survival protein SurE; Region: SurE; cl00448" /db_xref="CDD:193823" gene complement(1650663..1651946) /gene="serS" /locus_tag="AGROH133_06621" /db_xref="GeneID:10267421" CDS complement(1650663..1651946) /gene="serS" /locus_tag="AGROH133_06621" /EC_number="6.1.1.11" /note="catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="Seryl-tRNA synthetase" /protein_id="YP_004278952.1" /db_xref="GI:325293088" /db_xref="GeneID:10267421" /translation="MHDIKWIRENPEAFDAALARRGAEPAASSLIALDEKRRSVIQSL QDMQSRRNAASKDIGAAMAQKNMELAEKLKAEVADIKENMPRAEEEDRQVTAELNDAL SRLPNIPFDDVPDGKDEHDNVVTRVVGQKPGWNHEAKEHFEIGEALGYMDFERAAKLS GSRFTVLTSQLARLERALGQFMIDLHTSEHGYTEVSSPLMVRDEAMFGTGQLPKFSED LFKTTDGRWLIPTAEVTLTNLVSGEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGML RQHQFWKCELVSITDAESAVAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFSARKT YDLEVWLPGQNTYREISSCSVCGDFQARRMNARYRGKDDKATKFVHTLNGSGTAVGRC LIAVLENYLNDDGSVTIPNVLLPYMGGLKRIEKAA" misc_feature complement(1650669..1651946) /gene="serS" /locus_tag="AGROH133_06621" /note="seryl-tRNA synthetase; Provisional; Region: PRK05431" /db_xref="CDD:180077" misc_feature complement(1651620..1651946) /gene="serS" /locus_tag="AGROH133_06621" /note="Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403" /db_xref="CDD:145510" misc_feature complement(1650696..1651586) /gene="serS" /locus_tag="AGROH133_06621" /note="Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770" /db_xref="CDD:29815" misc_feature complement(order(1650696..1650701,1651107..1651109, 1651170..1651172,1651218..1651220,1651230..1651232, 1651242..1651244,1651269..1651271,1651278..1651280, 1651284..1651289,1651341..1651343,1651347..1651355, 1651359..1651370,1651407..1651409,1651416..1651418, 1651422..1651424,1651428..1651430,1651440..1651460, 1651467..1651484)) /gene="serS" /locus_tag="AGROH133_06621" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29815" misc_feature complement(order(1650774..1650776,1650792..1650794, 1650798..1650800,1650891..1650902,1651092..1651094, 1651098..1651100,1651104..1651106,1651113..1651115, 1651119..1651121,1651128..1651130,1651137..1651139, 1651155..1651157,1651161..1651163,1651248..1651250, 1651254..1651256,1651461..1651463)) /gene="serS" /locus_tag="AGROH133_06621" /note="active site" /db_xref="CDD:29815" misc_feature complement(1651347..1651370) /gene="serS" /locus_tag="AGROH133_06621" /note="motif 1; other site" /db_xref="CDD:29815" misc_feature complement(1651155..1651166) /gene="serS" /locus_tag="AGROH133_06621" /note="motif 2; other site" /db_xref="CDD:29815" misc_feature complement(order(1650774..1650776,1650783..1650791)) /gene="serS" /locus_tag="AGROH133_06621" /note="motif 3; other site" /db_xref="CDD:29815" gene complement(1652051..1652854) /gene="tatC" /locus_tag="AGROH133_06622" /db_xref="GeneID:10267422" CDS complement(1652051..1652854) /gene="tatC" /locus_tag="AGROH133_06622" /note="Sec-independent periplasmic protein translocase; Sec-independent protein secretion pathway component TatC" /codon_start=1 /transl_table=11 /product="Sec-independent protein translocase protein tatC" /protein_id="YP_004278953.1" /db_xref="GI:325293089" /db_xref="GeneID:10267422" /translation="MSGDIEDKPQPLIEHLMELRTRLIWSLGAFFVAFIACFAVAKHL FNLLVIPYKWAVIWAGLDVAKSSLIYTAPQEFFFTQIKVAMFGAMVISFPVIASQLYK FVAPGLYKNERAAFLPFLIASPILFLIGAALVYFFFTPMVMWFFLAMQQLPVDGEVAI SLMPKVSEYLSLIMTLVLSFGLVFQLPVVTTLLARVGILTSDWLREKRKFAIVMAFVV AAVLTPPDPMSQIGLALPAIILYEISIYMARLVERKRAAESKSTELEET" misc_feature complement(1652057..1652848) /gene="tatC" /locus_tag="AGROH133_06622" /note="Sec-independent protein translocase protein (TatC); Region: TatC; cl00521" /db_xref="CDD:193851" gene complement(1652851..1653579) /gene="tatB" /locus_tag="AGROH133_06629" /db_xref="GeneID:10267423" CDS complement(1652851..1653579) /gene="tatB" /locus_tag="AGROH133_06629" /note="mediates the export of protein precursors bearing twin-arginine signal peptides; Sec-independent protein secretion pathway components" /codon_start=1 /transl_table=11 /product="Sec-independent protein translocase protein tatB" /protein_id="YP_004278954.1" /db_xref="GI:325293090" /db_xref="GeneID:10267423" /translation="MFDIGWSELLVIAVVLIVVVGPKDLPPMIRAFGKTMAGLRKMAG DFRTQFDEALKEADMDDVRQTISDVRNLNPTNSLRDAMNPLRQLGNEIKSDLQKATAA PDAMSSTAEPATSEPVAPLVSVPEPEMKLPDVAPAVVPTPSASGPVTAVAAAEEKPKR ARAKSVATVEAEAVAAKPKRTTRSKPAAAPVEEAAVLKPTVKAVAKKVAVRKAAAEKA VAVADAKPAKPARTKAAKPKKDEA" misc_feature complement(1653337..1653576) /gene="tatB" /locus_tag="AGROH133_06629" /note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788" /db_xref="CDD:189129" gene complement(1653634..1653840) /gene="tatA" /locus_tag="AGROH133_06631" /db_xref="GeneID:10267424" CDS complement(1653634..1653840) /gene="tatA" /locus_tag="AGROH133_06631" /note="TatA; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; Sec-independent protein secretion pathway components" /codon_start=1 /transl_table=11 /product="Sec-independent protein translocase protein tatA" /protein_id="YP_004278955.1" /db_xref="GI:325293091" /db_xref="GeneID:10267424" /translation="MGSFSVWHWLIVLVIVLVLFGRGKIPELMGDVAKGIKSFKKGMA DEDQTPPPADVNAKTVDHKADEIK" misc_feature complement(1653643..1653840) /gene="tatA" /locus_tag="AGROH133_06631" /note="mttA/Hcf106 family; Region: MttA_Hcf106; cl00788" /db_xref="CDD:189129" gene complement(1653971..1654750) /gene="scpB" /locus_tag="AGROH133_06633" /db_xref="GeneID:10267425" CDS complement(1653971..1654750) /gene="scpB" /locus_tag="AGROH133_06633" /note="Prokaryotic chromosome segregation and condensation protein ScpB; Chromosome segregation and condensation protein B" /codon_start=1 /transl_table=11 /product="Segregation and condensation protein B" /protein_id="YP_004278956.1" /db_xref="GI:325293092" /db_xref="GeneID:10267425" /translation="MTARRMRKGLIMTHDDETGEAAIVADGAADVVGAEPAVFSERQW KEAERIAEALVFASAEPVSVAFIAERLPRGMDVVTILHGLKAAYGERGVNLVQVGGQW AFRTAGDLSFVVHSEEKEPKKLSRAALEVLAIVAYHQPVTRAEIEEIRGVQTSRGTLD VLMEAGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGLEELKGAGLLSGRIP SNFGVPLPMMSDELREDEDPITQLDLEELGLLAPSGGDGDD" misc_feature complement(1654094..1654636) /gene="scpB" /locus_tag="AGROH133_06633" /note="Putative transcriptional regulators (Ypuh-like); Region: DUF387; cl00612" /db_xref="CDD:186106" gene complement(1654707..1655555) /gene="scpA" /locus_tag="AGROH133_06634" /db_xref="GeneID:10267426" CDS complement(1654707..1655555) /gene="scpA" /locus_tag="AGROH133_06634" /note="Prokaryotic chromosome segregation and condensation protein ScpA; Rec8/ScpA/Scc1-like protein (kleisin family)" /codon_start=1 /transl_table=11 /product="Segregation and condensation protein A" /protein_id="YP_004278957.1" /db_xref="GI:325293093" /db_xref="GeneID:10267426" /translation="MAADKSRTSTPMDKLWQDVTPERLTGEAGLVIDVAGFEGPLDLL LHLARTQKVDLSRISVLALAEQYLQFVETARRVRIELAADYLVMAAWLAFLKSKLLIP QQAKDDGPSGEEMAATLAFRLKRLEAMREAAERLVNRAQLGRDIFARGAPEHIPHINR SAYEANLYDLLSAYANLRQRQAITQVTIEKRQVWSLVEARELLTSLLGDVGEWTVLDQ YLLQYVPDPAMRVTAIASAFAASLELVREGSLQIRQEGAFQPIYMRRSERDDRAPNAE RTDNDA" misc_feature complement(1654737..1655477) /gene="scpA" /locus_tag="AGROH133_06634" /note="ScpA/B protein; Region: ScpA_ScpB; cl00598" /db_xref="CDD:186098" gene complement(1655614..1656630) /locus_tag="AGROH133_06635" /db_xref="GeneID:10267427" CDS complement(1655614..1656630) /locus_tag="AGROH133_06635" /EC_number="3.2.1.52" /note="glycoside hydrolase, family 3, N-terminal; Beta-glucosidase-related glycosidases" /codon_start=1 /transl_table=11 /product="glycosyl hydrolase" /protein_id="YP_004278958.1" /db_xref="GI:325293094" /db_xref="GeneID:10267427" /translation="MTDCKAMILGCGGLTLSADEIALYRNERPWGFILFGRNIGDAQQ ITDLVASMRDAVARPDAPVLIDQEGGRVQRIKPPLLQAYPNARILGEIYERDREEGLR AAWLMSRLHAFDLMKFGINIDCLPVLDVPVEGASNVIGNRAYGYSPTMVAEMGQAAAD GLKAGGMLPVMKHMPGHGRGMVDSHHELPVVDVPLDELDAHDFVPFRALNRELMAMSA HLVFNAVDRERPATTSPKVIEEIIRGRIGFDGLLMSDDSSMNALKGTLGQRAANIVAG GCDIVLHCNGVMGEMLEVVKEVPVLSGRSLERVRAVEAGFPATDASDEAELRAEFNAM WAVS" misc_feature complement(1655776..1656594) /locus_tag="AGROH133_06635" /note="Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; cl07971" /db_xref="CDD:186723" gene complement(1656873..1659881) /locus_tag="AGROH133_06636" /db_xref="GeneID:10267428" CDS complement(1656873..1659881) /locus_tag="AGROH133_06636" /note="Sporulation/cell division region, bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278959.1" /db_xref="GI:325293095" /db_xref="GeneID:10267428" /translation="MVEKNVAYNRDARSEGFADNDPLAELARIVGFDERPSHAGSEAA PRAGSAATRREPEFNLEDELLREFEVYDAPHADPVVLDPANDVRAGIHPSDFMQRVES VFARREPELAPADEPVFEASPAPEVSQEPLPEADQAYIHNYVETSTQDIRADFRDDAG AVAEVFDVHSRQSRPAEPVVYQQAAWEEPQAVEPAQSTWHAMPELPADVSSNIAHSDQ SHAPEPQAFDLADEVEIAVAEAPAPISVRPPSHGGRSSLEFSSLRLPLANFGARRDVA AGDPRRIEPRSEALPAARIEPQAEPVPAPEPVFVQAEETAPTFAPSVAEKPVETNLSP MDELIYGVAKYSIPGRGEEPVVQDAPIAQAAPIVPAARVEPPLVATAPVAAAPVKAAP PVTAPSVQEPDFGDFAGFNDDDFELALDDLDLDLDLSEIAAAEVAPAPVPQPVRQQPV APVAVAAAAPQPVREQPAPQPRPAPVAAIQVAAPPVQPRPVAAAPQPVAPQTLESLPF DPSQIGETEEHPENITEMDVPELPVGVFEPKPVARRHEEDLDIDTELATLFAPAVAGG LDRHKHAENRAAAPQARPQAQGPEEVDEFERALEEDFRRSMQEAAASRGNAPRDAENT YVDHQPAYREEEERGGRRWIMPVAAAIGLVLVGGGVYALMSGGSSGAGSNGAPVIISA DNDPMKVVPENPGGRVVPNQDKAVYDRVAGGSAADPKQPALISSNEKPVDVVQRTLIP EQLPLEGENDADMEATGTPVGETEDPRLLSPEEKASQNEGAGATGVSPRKVRTMIVKP DGTLVAQEVDAPAAQPPKADKVAELAAPQAAKPGEGAPAVIAASRVPVAPEHPQANTP AASSTPASQSAAPVPSARPSAQPSNVVATVTNQGNVRPAATAPAQPQAAQQQTAAAMP AATSAPSSGGYYIQIASLPSQAEAQKSYQNMSAKFGSVISGRGVDIKAAEIAGKGTFY RVRIPAGDKNEAVALCEKFRAAGGSCLVAR" misc_feature complement(1656876..1657115) /locus_tag="AGROH133_06636" /note="Sporulation related domain; Region: SPOR; cl10051" /db_xref="CDD:186898" gene complement(1659948..1661705) /gene="argS" /locus_tag="AGROH133_06637" /db_xref="GeneID:10267429" CDS complement(1659948..1661705) /gene="argS" /locus_tag="AGROH133_06637" /EC_number="6.1.1.19" /note="catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="Arginyl-tRNA synthetase" /protein_id="YP_004278960.1" /db_xref="GI:325293096" /db_xref="GeneID:10267429" /translation="MNIFADFDTRIKNALETLDLVKENREKVDFSRITVESPRDLSHG DVATNAAMVLAKPLGTNPRALAELIVPALQADGDVDSVNVAGPGFINLKVSVGYWQRL LAYMIGQGIDFGRSKIGTGQKINVEYVSANPTGPMHVGHCRGAVVGDTLANLLAFAGY GVTKEYYINDAGSQIDVLARSVFLRYREALGEDIGAIPSGFYPGDYLVPVGQALADEY GIKLRAMPEEKWLPIVKDKAIAAMMVMIREDLETLNVKHDVFFSERTLHEGNGGPILS AINDLTFKGHVYKGTLPPPKGELPEDWEDREQTLFRSTEVGDDMDRALMKSDGSYTYF AADVAYFKNKFDRGFSEMIYVLGADHGGYVKRLEAVARAVSEGKSKLTVLLCQLVKLY RDGEPVKMSKRSGDFVTLRDVVDEVGRDPVRFMMLYRKNSEPLDFDFAKVTEQSKDNP VFYVQYAHARCMSIFRQAQEAFPGLALSQDDMSSSVALISDINELQLVAKLAEYPRLI ESAALAHEPHRLAFYLYDLASSFHGHWNKGKDHQELRFINDKNRELSIARLGLVNAVA NVLKSGLTLLGADAPDEMR" misc_feature complement(1659954..1661705) /gene="argS" /locus_tag="AGROH133_06637" /note="arginyl-tRNA synthetase; Reviewed; Region: argS; PRK01611" /db_xref="CDD:179308" misc_feature complement(1661424..1661681) /gene="argS" /locus_tag="AGROH133_06637" /note="Arginyl tRNA synthetase N terminal domain; Region: Arg_tRNA_synt_N; pfam03485" /db_xref="CDD:190660" misc_feature complement(1660491..1661339) /gene="argS" /locus_tag="AGROH133_06637" /note="catalytic core domain of arginyl-tRNA synthetases; Region: ArgRS_core; cd00671" /db_xref="CDD:185675" misc_feature complement(order(1660617..1660619,1660626..1660628, 1660695..1660697,1660707..1660709,1661283..1661285, 1661292..1661294,1661310..1661312,1661316..1661318, 1661325..1661327)) /gene="argS" /locus_tag="AGROH133_06637" /note="active site" /db_xref="CDD:185675" misc_feature complement(1661283..1661294) /gene="argS" /locus_tag="AGROH133_06637" /note="HIGH motif; other site" /db_xref="CDD:185675" misc_feature complement(1660497..1660508) /gene="argS" /locus_tag="AGROH133_06637" /note="KMSK motif region; other site" /db_xref="CDD:185675" misc_feature complement(1659954..1660463) /gene="argS" /locus_tag="AGROH133_06637" /note="Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020" /db_xref="CDD:196302" misc_feature complement(order(1660101..1660103,1660110..1660112, 1660119..1660121,1660140..1660142,1660314..1660319, 1660323..1660328,1660338..1660340,1660365..1660367, 1660374..1660376,1660386..1660388)) /gene="argS" /locus_tag="AGROH133_06637" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153408" misc_feature complement(order(1660101..1660103,1660314..1660319, 1660326..1660331,1660338..1660340)) /gene="argS" /locus_tag="AGROH133_06637" /note="anticodon binding site; other site" /db_xref="CDD:153408" gene complement(1661782..1662999) /gene="dgt" /locus_tag="AGROH133_06638" /db_xref="GeneID:10267430" CDS complement(1661782..1662999) /gene="dgt" /locus_tag="AGROH133_06638" /EC_number="3.1.5.1" /note="dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; dGTP triphosphohydrolase" /codon_start=1 /transl_table=11 /product="deoxyguanosinetriphosphate triphosphohydrolase" /protein_id="YP_004278961.1" /db_xref="GI:325293097" /db_xref="GeneID:10267430" /translation="MIIDQRALGFGSGERAVFASDPWTTRGRLFAEEGSLTRSEFQRD RDRIVHTTAFRRLKHKTQVFISPDGDHYRTRLTHTIEVAQIARALARALKLDEDLAEG VALVHDFGHTPFGHTGEDALDAVLLPYGGFDHNAQSLRIVTKLERRYAEYDGINLTWE TLEGLVKHNGPLVNAEGEGVKGPVPLPILEYCELQDLEIGSYASLEAQMAAIADDIAY NTHDIDDGLRAGYLSFEMLEEVPFLSKLMAEVRAKYPVLDKERFANEIMRRQITHMVE DVIGVAQQNLSRLKPKSAADIRAADFTVATFSPEMAETDRQIKKLLFAHIYRHPEIMR IRAGATQIVTDLFHRYMEVPAEMQSHYWVDSISGMSKAAKARHVGDYLAGMTDSYALR AHQRLFDHTPDLR" misc_feature complement(1661785..1662960) /gene="dgt" /locus_tag="AGROH133_06638" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076" /db_xref="CDD:193645" misc_feature complement(1661806..1662924) /gene="dgt" /locus_tag="AGROH133_06638" /note="deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional; Region: PRK01096" /db_xref="CDD:179219" gene 1663229..1663561 /locus_tag="AGROH133_06639" /db_xref="GeneID:10267431" CDS 1663229..1663561 /locus_tag="AGROH133_06639" /note="Iron-sulphur cluster biosynthesis; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly accessory protein" /protein_id="YP_004278962.1" /db_xref="GI:325293098" /db_xref="GeneID:10267431" /translation="MENSDITLSEAAAKRIAQIVAADAGKQALRVSVEGGGCSGFSYK FDLAEDPADDDIVIARGDAKVLIDSLSVVYMAGSEIDFVDNLLGQSFQIKNPNAVASC GCGTSFSI" misc_feature <1663310..1663558 /locus_tag="AGROH133_06639" /note="Iron-sulphur cluster biosynthesis; Region: Fe-S_biosyn; cl00400" /db_xref="CDD:189093" gene 1663839..1664636 /locus_tag="AGROH133_06640" /db_xref="GeneID:10267432" CDS 1663839..1664636 /locus_tag="AGROH133_06640" /EC_number="3.1.11.2" /note="Exodeoxyribonuclease III xth, Endonuclease/Exonuclease/phosphatase family; Exonuclease III" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease III" /protein_id="YP_004278963.1" /db_xref="GI:325293099" /db_xref="GeneID:10267432" /translation="MKIATWNINGVKARIENLCQWLKDSSPDIVCLQEIKSVDEGFPR LELEALGYHVETHGQKGFNGVALLSKMKPDEINHGLPGDDADEQARFIEGVFSVDGGA IRVCSLYLPNGNPPDDPVKYPYKLAWMERLRRFAEDRLALEEPLILAGDYNVIPEPFD CHDPRVWAGDALFLPKTRSAFRRLENLGFTDAARATTDEPGLYSFWDYQAGAWPKNNG IRIDHLMLSAEAADRLESVSIEKHVRAWEKPSDHVPVCGYFNFTPIN" misc_feature 1663839..1664603 /locus_tag="AGROH133_06640" /note="Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; Region: ExoIII-like_AP-endo; cd09086" /db_xref="CDD:197320" misc_feature order(1663857..1663859,1663938..1663940,1664163..1664165, 1664172..1664174,1664289..1664291,1664295..1664297, 1664592..1664594) /locus_tag="AGROH133_06640" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197320" misc_feature order(1663857..1663859,1663938..1663940,1664163..1664165, 1664289..1664291,1664295..1664297,1664502..1664504, 1664589..1664594) /locus_tag="AGROH133_06640" /note="putative catalytic site [active]" /db_xref="CDD:197320" misc_feature order(1663863..1663868,1663872..1663880,1663938..1663940, 1664016..1664021,1664163..1664165,1664172..1664174, 1664178..1664180,1664199..1664201,1664289..1664291, 1664295..1664297,1664451..1664453,1664460..1664465, 1664493..1664495,1664499..1664504,1664580..1664585, 1664592..1664594) /locus_tag="AGROH133_06640" /note="active site" /db_xref="CDD:197320" misc_feature order(1663863..1663865,1663938..1663940,1664589..1664594) /locus_tag="AGROH133_06640" /note="metal binding site A [ion binding]; metal-binding site" /db_xref="CDD:197320" misc_feature order(1663863..1663868,1663872..1663880,1664016..1664021, 1664163..1664165,1664172..1664174,1664178..1664180, 1664199..1664201,1664460..1664465,1664580..1664585) /locus_tag="AGROH133_06640" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:197320" misc_feature order(1664163..1664165,1664172..1664174,1664289..1664291, 1664295..1664297,1664451..1664453,1664493..1664495, 1664499..1664501,1664592..1664594) /locus_tag="AGROH133_06640" /note="putative AP binding site [nucleotide binding]; other site" /db_xref="CDD:197320" misc_feature order(1664163..1664165,1664289..1664291,1664295..1664297, 1664592..1664594) /locus_tag="AGROH133_06640" /note="putative metal binding site B [ion binding]; other site" /db_xref="CDD:197320" gene complement(1664766..1665560) /gene="exoR" /locus_tag="AGROH133_06641" /db_xref="GeneID:10267433" CDS complement(1664766..1665560) /gene="exoR" /locus_tag="AGROH133_06641" /note="Tetratricopeptide-like helical; FOG: TPR repeat, SEL1 subfamily" /codon_start=1 /transl_table=11 /product="exopolysaccharide production negative regulator" /protein_id="YP_004278964.1" /db_xref="GI:325293100" /db_xref="GeneID:10267433" /translation="MLKCEAHVLKPLIMSLLLASLAMPVLAFDINAGVTKESGPFDLF KFGFKAYKNGNKDEAVEAYRYAAEKGHTGSRWALANMYAFGDGVAKNDFEAFKIYSEI ASQGVEPGSEDTGFFVNALLSLADYYRHGIPGTPVKMDLSQARQLYFQVASTFGVAEA QFRLAEMILAGEGGRADVQQAKKWLNQARKHGHAGAMSIFGNLLFQEGQTTQGLAFMT AALDKCTAVDCTWIQTLQEQAFSLAGENDRRAAIALAQNMQIDDPN" misc_feature complement(1664769..>1665455) /gene="exoR" /locus_tag="AGROH133_06641" /note="FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790" /db_xref="CDD:31133" misc_feature complement(1664982..1665089) /gene="exoR" /locus_tag="AGROH133_06641" /note="Sel1 repeat; Region: Sel1; cl02723" /db_xref="CDD:194424" gene complement(1665547..1665864) /locus_tag="AGROH133_06644" /db_xref="GeneID:10267434" CDS complement(1665547..1665864) /locus_tag="AGROH133_06644" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278965.1" /db_xref="GI:325293101" /db_xref="GeneID:10267434" /translation="MRRVKTGLDSGFKQVIREFDPGFLFGADRQAVKRRYIAGNYAYI CLTENLEQLPHMTTGSALESAAGKTQCVRKIATRRGSALQYSASIGYMPGRVREVRLN AEM" gene complement(1666125..1667414) /gene="fadL" /locus_tag="AGROH133_06645" /db_xref="GeneID:10267435" CDS complement(1666125..1667414) /gene="fadL" /locus_tag="AGROH133_06645" /note="Membrane protein involved in aromatic hydrocarbon degradation" /codon_start=1 /transl_table=11 /product="Long-chain fatty acid transport protein" /protein_id="YP_004278966.1" /db_xref="GI:325293102" /db_xref="GeneID:10267435" /translation="MAKTAFFRGAVCFVASIAAVTPSLAGGLERGGYNIDLLFDPSDY VLDSSATFVAPQRKVENARDNPLKSGPLPATWSRSADDSENFWSTRIGAKAAIGDFGD CMFDYSQPWGAHLNPGIWQGSSYNIETKVKSHNYATTCRVKFDLGKGDFSIIGGGFYQ EISGYKYRQVLGPAVLGLNPAWSSFSGVGKLEMEGDGWGWRAGVAYEIPEVAFRASLV YNSAVDHDLTGFADVRGVPQTPPSISPTLAKYGGKLVPIYGSVSMPDSIELKVQSGIA PDWLAFGSVKWTDWSQIQVIPFCAVGTSPCVPSGQDTLNTLDLFYRDGWTISGGVGHK FNEQWSGAVSLTWDRGTSTVIGTQTDTWTLGTQIVYSPNKNIEFKVAGALGLLTSGSS SINGGPCGAGFTCGNEAGYDFGNDLVAAISTGVKVKF" misc_feature complement(1666128..1667414) /gene="fadL" /locus_tag="AGROH133_06645" /note="Long-chain fatty acid transport protein [Lipid metabolism]; Region: FadL; COG2067" /db_xref="CDD:32250" misc_feature complement(1666290..>1667057) /gene="fadL" /locus_tag="AGROH133_06645" /note="Outer membrane protein transport protein (OMPP1/FadL/TodX); Region: Toluene_X; cl09488" /db_xref="CDD:195847" gene complement(1667864..1670707) /gene="valS" /locus_tag="AGROH133_06648" /db_xref="GeneID:10267436" CDS complement(1667864..1670707) /gene="valS" /locus_tag="AGROH133_06648" /EC_number="6.1.1.9" /note="valine-tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; Isoleucyl-tRNA synthetase" /codon_start=1 /transl_table=11 /product="valyl-tRNA synthetase" /protein_id="YP_004278967.1" /db_xref="GI:325293103" /db_xref="GeneID:10267436" /translation="MLEKTYDSASVEPKIAKAWDEANAFRAGANAKPGAETFTIVIPP PNVTGSLHMGHALNNTLQDILVRFERMRGKDVLWQPGMDHAGIATQMVVERKLMEQQL PGRREMGREAFVDKVWEWKAESGGLIFNQLKRLGASCDWSRERFTMDEGLSEAVLEVF VTLYKQNLIYKDKRLVNWDPKLQTAISDMEVEQLEVKGNLWHFRYPLEKGVTYQHPIA FDEEGKPTEFETRDYIVVATTRPETMLGDTGVAVNPEDERYKGIIGKHVILPIVGRKI PIVADDYADPTAGTGAVKITPAHDFNDFEVGKRCGLRAINVMNIDGTISIKENEDFLE GLNHPAALHGAWDRLEGQDRFFARRVIVEIFEEAGLLDKIEPHKHVVPHGDRGGVPIE PRLTDQWWVDNKTLAQPAIASVREGRTNFVPKNWENTYFQWMENIQPWCISRQLWWGH QIPAWYGPDGQVFVEKTEEEALQAAIQHYIAHEGPWKAWVEEKLENFKPGEILTRDED VLDTWFSSALWPFSTLGWPEKTPELARYYPTNVLVTGFDIIPFWVVRMMQMGLHFMKD DAGNPVEPFSTVYIHALVRDKNGQKMSKSKGNVIDPLELIDEYGADALRFTLAIMAAQ GRDVKLDPARIAGYRNFGTKLWNATRFAEMNGVKRDLHFLAETASLTINRWILTELAN TARDVTAALENFRFNDASGILYRFVWNQFCDWYLELLKPVFGGEDEAAKAESQACAAY VLDEIYKLLHPFMPFMTEELWAHTAGEGEERADLLCLTDWPTPEFRDDAAAAEINWLI DLVSGIRSTRAEMNVPPGATASLVVVGANTSTEARLDRHAAAIRRLARADEIRGADVA PKGSAQIIIGEATVCLPLGNLVDLAAEKARLEKAIGKVDAEMERIDKKLSNEKFVANA DPEVVAAERERKAELEVQLTSLRTALQRVSEAG" misc_feature complement(1667873..1670707) /gene="valS" /locus_tag="AGROH133_06648" /note="valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729" /db_xref="CDD:180225" misc_feature complement(<1670135..1670602) /gene="valS" /locus_tag="AGROH133_06648" /note="catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817" /db_xref="CDD:185677" misc_feature complement(1670543..1670554) /gene="valS" /locus_tag="AGROH133_06648" /note="HIGH motif; other site" /db_xref="CDD:185677" misc_feature complement(1668818..>1669558) /gene="valS" /locus_tag="AGROH133_06648" /note="catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817" /db_xref="CDD:185677" misc_feature complement(order(1668932..1668934,1668956..1668967, 1669052..1669054,1669064..1669069,1669073..1669078, 1669160..1669162,1669169..1669171)) /gene="valS" /locus_tag="AGROH133_06648" /note="active site" /db_xref="CDD:185677" misc_feature complement(1668923..1668937) /gene="valS" /locus_tag="AGROH133_06648" /note="KMSKS motif; other site" /db_xref="CDD:185677" misc_feature complement(1668419..1668820) /gene="valS" /locus_tag="AGROH133_06648" /note="Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962" /db_xref="CDD:153416" misc_feature complement(order(1668548..1668550,1668557..1668562, 1668584..1668586,1668605..1668607,1668614..1668616, 1668755..1668760,1668764..1668769,1668776..1668781, 1668788..1668793,1668797..1668799,1668806..1668811, 1668815..1668817)) /gene="valS" /locus_tag="AGROH133_06648" /note="tRNA binding surface [nucleotide binding]; other site" /db_xref="CDD:153416" misc_feature complement(order(1668548..1668550,1668557..1668562, 1668572..1668574,1668755..1668760,1668764..1668769, 1668776..1668778)) /gene="valS" /locus_tag="AGROH133_06648" /note="anticodon binding site; other site" /db_xref="CDD:153416" misc_feature complement(1667882..1668073) /gene="valS" /locus_tag="AGROH133_06648" /note="Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458" /db_xref="CDD:151031" gene complement(1670902..1671861) /locus_tag="AGROH133_06649" /db_xref="GeneID:10267437" CDS complement(1670902..1671861) /locus_tag="AGROH133_06649" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278968.1" /db_xref="GI:325293104" /db_xref="GeneID:10267437" /translation="MAQPSVAREPSMEEILASIRRIIESNETGPTGAFSGQLPPVYDD EDDGAGEASFVTEAISPPARVPPAANQAFGARPVQDFSAASEKQTPEQQEISAEKSMS LADVAARVRAAADRNAAMGPQAFAAQAQREPAQAAPAAHSSSVPQPSAAQQVERPAPQ RPTDVRPLLAAAAASTSEQPAAFAAEDRAAAAAVESAAFENRFDQLTLRGAIETPVAQ DHFEISVQEPAVEMPSFDLAEPKEEGGLSLNLISEAAGAQIARSFSELAEIFDGVERR SIEDMAAEMLRPMLQDWLEDNLPTLVERLVREEIERVARGSRR" misc_feature complement(<1671568..1671828) /locus_tag="AGROH133_06649" /note="Protein of unknown function (DUF2497); Region: DUF2497; cl11534" /db_xref="CDD:159522" misc_feature complement(<1670959..1671117) /locus_tag="AGROH133_06649" /note="Protein of unknown function (DUF2497); Region: DUF2497; cl11534" /db_xref="CDD:159522" gene complement(1672216..1672887) /gene="pcm2" /locus_tag="AGROH133_06650" /db_xref="GeneID:10267438" CDS complement(1672216..1672887) /gene="pcm2" /locus_tag="AGROH133_06650" /EC_number="2.1.1.77" /note="Protein-L-isoaspartate(D-aspartate) O-methyltransferase; Protein-L-isoaspartatecarboxylmethyltransferase" /codon_start=1 /transl_table=11 /product="protein-L-isoaspartate O-methyltransferase" /protein_id="YP_004278969.1" /db_xref="GI:325293105" /db_xref="GeneID:10267438" /translation="MMDFETARANMVDSQLRTTDVTSHSVLKAFLSVPREAFVPAGVR QIAYVDEDLQICPARDGRPARYVMKASPLAKLLQLAAVTKEDVVLEVGGGAGYTAAIL SQLAGSVVSLECDETLAVEATETLASLGYDNVAVVTGDLEKGYAGEAPYDLIFINGSV EEVPAALTDQLRDGGRLVVVVGYGNAAKATVYRRDGNSTSAATSFNASIKPLPGFAKA AEFVF" misc_feature complement(1672372..1672626) /gene="pcm2" /locus_tag="AGROH133_06650" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1672417..1672419,1672465..1672473, 1672546..1672551,1672597..1672617)) /gene="pcm2" /locus_tag="AGROH133_06650" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1673133..1673206) /locus_tag="AGROH133_06651" /db_xref="GeneID:10267439" tRNA complement(1673133..1673206) /locus_tag="AGROH133_06651" /product="tRNA-Cys" /db_xref="GeneID:10267439" gene complement(1673447..1673599) /locus_tag="AGROH133_06652" /db_xref="GeneID:10267440" CDS complement(1673447..1673599) /locus_tag="AGROH133_06652" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278970.1" /db_xref="GI:325293106" /db_xref="GeneID:10267440" /translation="MIGTILVILIILFLIGALPSWGYHNYGYGPSGGLGLVLVIVLVL VLLGRI" gene 1674107..1674211 /locus_tag="AGROH133_06655" /db_xref="GeneID:10267441" CDS 1674107..1674211 /locus_tag="AGROH133_06655" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278971.1" /db_xref="GI:325293107" /db_xref="GeneID:10267441" /translation="MSGFANLIPLFIFGLLVYAFFRWVARDTQNPRRK" gene 1674298..1674579 /locus_tag="AGROH133_06657" /db_xref="GeneID:10267442" CDS 1674298..1674579 /locus_tag="AGROH133_06657" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278972.1" /db_xref="GI:325293108" /db_xref="GeneID:10267442" /translation="MKTLVSLAAIALTLAGCTTSGPAAYVEPIPGSITYKGQPRTKLT KSPIGSTFSHEFRIDGSTRAVETYRIAPDRSLELIDRRIIRDWLFGRDD" gene 1674663..1674908 /locus_tag="AGROH133_06659" /db_xref="GeneID:10267443" CDS 1674663..1674908 /locus_tag="AGROH133_06659" /note="Protein of unknown function DUF982" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278973.1" /db_xref="GI:325293109" /db_xref="GeneID:10267443" /translation="MNTRWQKPVLIAFETPGDYTSIETTQAASWAMIEDWPIEDGDAL DAALLVCAAVDAGRKKPEDARKAFIAAAIEAGLDIKA" gene complement(1675143..1675415) /locus_tag="AGROH133_06660" /db_xref="GeneID:10267444" CDS complement(1675143..1675415) /locus_tag="AGROH133_06660" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278974.1" /db_xref="GI:325293110" /db_xref="GeneID:10267444" /translation="MHCWKKKCGPKGRIFLLRHLTSPVPQGMIFKAGQIGRLTMKRQL AITTPSMEISRKPFNPSRISILLVDRRENGKDLSRFHNSRMKFRKF" gene complement(1675418..1676164) /gene="wrbA" /locus_tag="AGROH133_06661" /db_xref="GeneID:10267445" CDS complement(1675418..1676164) /gene="wrbA" /locus_tag="AGROH133_06661" /note="stationary phase protein that binds TrpR repressor; Multimeric flavodoxin WrbA" /codon_start=1 /transl_table=11 /product="TrpR binding protein WrbA" /protein_id="YP_004278975.1" /db_xref="GI:325293111" /db_xref="GeneID:10267445" /translation="MRMHRWCGTGLWATFASHACNGSPLIIIAFLKRLLASTPETINP KDTKKMTKVLVLYYSSYGHIETMAYAVAEGVKSAGAEVVVKRVPELVPEEVAKSSHFK LDQAAPIATVDELAEYDAIIVGAGTRFGTVASQMRNFWDQTGGLWFGGKLVGKVGSAF TSSATQHGGQESTILGFLPTFLHHGMAVVGLPYAFQGQMGVDEIKGGSPYGASTITDG DGSRQPSAIELEAARYQGAHVAKLAAKLSA" misc_feature complement(1675421..1676017) /gene="wrbA" /locus_tag="AGROH133_06661" /note="NADPH-dependent FMN reductase; Region: FMN_red; cl00438" /db_xref="CDD:193819" gene 1676295..1677086 /gene="cinA" /locus_tag="AGROH133_06662" /db_xref="GeneID:10267446" CDS 1676295..1677086 /gene="cinA" /locus_tag="AGROH133_06662" /note="molybdopterin binding domain; Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein" /protein_id="YP_004278976.1" /db_xref="GI:325293112" /db_xref="GeneID:10267446" /translation="MSNPSPTPSVVTAAMLAIGDELLSGRTKDKNIGHLADVLTMSGI DLKEVRIVADEEHAIVEALNALRARYDYVFTSGGIGPTHDDITADAVSVAFGLPCEHD AEALRILGDMYRVREMEFTEARKRMARMPRGASHIANPVSVAPGFVIGNVHVMAGVPQ VFQAMLDNVMPTLRTGAKVMSQSVRSPYGEGDIGTPLTAIQKAHPETSIGSYPKYDGQ RFSTEIVVRARDATVLKAAADAVATMIETIGQEKTLSASKGDATA" misc_feature 1676328..1676822 /gene="cinA" /locus_tag="AGROH133_06662" /note="Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of...; Region: cinA; cd00885" /db_xref="CDD:58166" misc_feature order(1676526..1676534,1676760..1676765,1676775..1676777, 1676784..1676786) /gene="cinA" /locus_tag="AGROH133_06662" /note="putative MPT binding site; other site" /db_xref="CDD:58166" gene 1677173..1678018 /locus_tag="AGROH133_06663" /db_xref="GeneID:10267447" CDS 1677173..1678018 /locus_tag="AGROH133_06663" /note="Universal stress protein family; Universal stress protein UspA and related nucleotide-binding proteins" /codon_start=1 /transl_table=11 /product="universal stress family protein" /protein_id="YP_004278977.1" /db_xref="GI:325293113" /db_xref="GeneID:10267447" /translation="MGYKTILAVIDNVENTQKLGDFVVSLANQFSSHVIGLHMETLAA VPLVAPMEIPDPATVQVLQDVAHKETTDVGNLFEHTLSANGISHEWRSFVTSVGYASS SAIDSARCADLIVARQSNSSALSDSRSDIDGFLHESGRPVLLVPHVLTVAKPVKRVLI AWNGSREATRATFDALPFLIAAESVEIFSVDQAESETQSSGLAGTELAATLARHGVNV TVTSQEKIAGISPQAAIENRLSDHSIDLLVMGAYGHSRWWELLFGGVTRTLLDSMTAM TLLSR" misc_feature 1677641..1678009 /locus_tag="AGROH133_06663" /note="Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293" /db_xref="CDD:30165" misc_feature order(1677653..1677661,1677713..1677715,1677917..1677922, 1677926..1677931,1677959..1677970) /locus_tag="AGROH133_06663" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30165" gene 1678060..1678629 /gene="gpt" /locus_tag="AGROH133_06664" /db_xref="GeneID:10267448" CDS 1678060..1678629 /gene="gpt" /locus_tag="AGROH133_06664" /EC_number="2.4.2.22" /note="catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins" /codon_start=1 /transl_table=11 /product="xanthine phosphoribosyltransferase" /protein_id="YP_004278978.1" /db_xref="GI:325293114" /db_xref="GeneID:10267448" /translation="MLAFLQVLRLLAKAIDNFDQMVDDMSLPDKAFPVTWDQFHRDAR ALAWRLAGLGREFRAIVCITRGGLVPAAIISRELNIRLIDTVCIATRHDYVNQGDTVL LKGVAPELMSDGGEGVLVVDDLTDTGKTALEVREMLPKAHFACVYAKPKGVPTIDTFV TEVSQDTWIYFPWDMGFTYQEPIAKGSRG" misc_feature 1678132..1678617 /gene="gpt" /locus_tag="AGROH133_06664" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene 1679307..1683125 /gene="nrdE" /locus_tag="AGROH133_06665" /db_xref="GeneID:10267449" CDS 1679307..1683125 /gene="nrdE" /locus_tag="AGROH133_06665" /EC_number="1.17.4.1" /note="Catalyzes the rate-limiting step in dNTP synthesis; Ribonucleotide reductase, subunit alpha" /codon_start=1 /transl_table=11 /product="ribonucleotide-diphosphate reductase subunit alpha" /protein_id="YP_004278979.1" /db_xref="GI:325293115" /db_xref="GeneID:10267449" /translation="MRIERRFTKPGQSSYAEIEFRKAVSEIKNPDGSIVFRLADIDVP AQFSQVATDVLAQKYFRKAGVPKVLKKVEENDVPSFLWRSVADEKAMKDLPEGERYGS ETDARQVFDRLAGTWTYWGWKGKYFSTEEDALAFRDELAYMLATQRVAPNSPQWFNTG LHWAYGIDGPGQGHFYVDPFTGKLTKSKSSYEHPQPHACFIQSVEDDLVNEGGIMDLW VREARLFKYGSGTGSNFSYLRGEGEKLSGGGKSSGLMSFLKIGDRAAGAIKSGGTTRR AAKMVVVDADHPDIEAYIDWKVNEEQKVAALVTGSKIVAKHLKAIMKACVNCEADNGD CFDPAKNPALKREIRAAKKDMVPENYVKRVIQFAQQGYKDIQFKTYDTDWDSEAYLTV SGQNSNNSVSLKDDFLRAVENDGDWNLTARKDGKVMKTLKARDLWEKISHAAWASADP GLHFNTTMNDWHTSPAEGPIRASNPCSEYMFLDDTACNLASLNLLQFKDQATKRIDIA DYEHAVRLWTVVLEVSVMMAQFPSRQIAERSYEYRTLGLGYANIGGLLMSSGIPYDSD EGRAIAGALTAIMTGVSYATSAEMAGELGPFPGFAPNRDNMLRVIRNHRRAAHGLSYG YEGLSVNPVALIHSDCTDQDLVAHATAAWDKALELGEKHGYRNAQTTVIAPTGTIGLV MDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPESLRSLGYSESQIAEIEAYAVGHG NLNQAPAINPSSLKAKGFTDEKIEAVNGALKSAFDIKFVFNQWTLGADFLKGTLKVSD EQLSDMSFNLLEHLGFSKKDIEAANVHVCGAMTLEGAPFLKNEHLAVFDCANPCGKIG KRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCGAAYMLSWKLALKANALYR DGSKLSQPLNASLVEDEDDEDFVEELIQQPLAQQAVTITEKIVERVIERVSREREKLP NRRQGYTQKATVGGHKVYLRTGEFGDGRIGEIFIDMHKEGAAFRAMMNNFAIAISLGL QYGVPLEEYVEAFTFTKFEPAGMVQGNDAIKNATSILDYVFRELAVSYLGRHDLAHVD TSDFSNTALGKGIQEGKTNLLSTGWTRGYKPTLVSNNEGERAASEPKGSATAAPARAS ANVTSFAGSAARKLEPTVAISTSEIVSFKRDYEERAKELAEEIAEEVIDDVVQEAKQT ATALFSDKAAADAASAKAEAKKKENERRMRSIAQGYTGNMCSECQNFTMVRNGTCEKC DTCGATSGCS" misc_feature 1679307..1682717 /gene="nrdE" /locus_tag="AGROH133_06665" /note="ribonucleotide-diphosphate reductase subunit alpha; Validated; Region: PRK07562" /db_xref="CDD:181031" misc_feature 1679397..1679747 /gene="nrdE" /locus_tag="AGROH133_06665" /note="Class II vitamin B12-dependent ribonucleotide reductase; Region: Ribonuc_red_2_N; pfam08471" /db_xref="CDD:149502" misc_feature 1679718..>1680218 /gene="nrdE" /locus_tag="AGROH133_06665" /note="Ribonucleotide reductase and Pyruvate formate lyase; Region: RNR_PFL; cl09939" /db_xref="CDD:186877" misc_feature 1680192..>1680401 /gene="nrdE" /locus_tag="AGROH133_06665" /note="Domain of unknown function DUF28; Region: DUF28; cl00361" /db_xref="CDD:193787" misc_feature <1680477..1681391 /gene="nrdE" /locus_tag="AGROH133_06665" /note="Class II ribonucleotide reductase, dimeric form; Region: RNR_II_dimer; cd02888" /db_xref="CDD:153089" misc_feature order(1680726..1680734,1680738..1680740,1680771..1680773, 1681326..1681343) /gene="nrdE" /locus_tag="AGROH133_06665" /note="active site" /db_xref="CDD:153089" misc_feature <1681881..1682054 /gene="nrdE" /locus_tag="AGROH133_06665" /note="Ribonucleotide reductase and Pyruvate formate lyase; Region: RNR_PFL; cl09939" /db_xref="CDD:186877" misc_feature 1682244..1682531 /gene="nrdE" /locus_tag="AGROH133_06665" /note="TSCPD domain; Region: TSCPD; cl14834" /db_xref="CDD:196835" misc_feature <1682994..1683122 /gene="nrdE" /locus_tag="AGROH133_06665" /note="ribonucleotide-diphosphate reductase subunit alpha; Validated; Region: PRK07562" /db_xref="CDD:181031" gene 1683268..1683615 /locus_tag="AGROH133_06666" /db_xref="GeneID:10267450" CDS 1683268..1683615 /locus_tag="AGROH133_06666" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278980.1" /db_xref="GI:325293116" /db_xref="GeneID:10267450" /translation="MTKTAQAREAYNLYQQKNLARLIFHAIKLFLYTAVPATVIAYLT DHISGLFYILAPFFIYLSFPFWFGLYVSSALLAQMVGESLGKKTLLGDNPTFPDVTFH LTGFRVKDESNES" gene 1683845..1683961 /locus_tag="AGROH133_06669" /db_xref="GeneID:10267451" CDS 1683845..1683961 /locus_tag="AGROH133_06669" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278981.1" /db_xref="GI:325293117" /db_xref="GeneID:10267451" /translation="MRDWEQSRSEPNQPARAYLNVMAVDPEGTPAALRRGAA" misc_feature <1683845..1683931 /locus_tag="AGROH133_06669" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" /db_xref="CDD:195788" gene complement(1683968..1685293) /gene="mntH" /locus_tag="AGROH133_06670" /db_xref="GeneID:10267452" CDS complement(1683968..1685293) /gene="mntH" /locus_tag="AGROH133_06670" /note="Natural resistance-associated macrophage protein; Mn2+ and Fe2+ transporters of the NRAMP family" /codon_start=1 /transl_table=11 /product="manganese transport protein mntH" /protein_id="YP_004278982.1" /db_xref="GI:325293118" /db_xref="GeneID:10267452" /translation="MDKPVFGWRRNGDDLSLSDVHSSIKISPNAGTFRRAMAFFGPGY LVAVGYMDPGNWATSLAGGSKFGYTLLTVALISNIMAVVLQALCARLAIASGRDLAQA CRDAYPKPVAMVLWLLAEIAIIATDIAEVIGTAIGLNLIFGIPLELGVLITALDVFLI LYLQRLGFRWVEALVITLLGVIAVCFAIQLALADPDWSQVIRGFAPTTEIVTNPEMLY LALGILGATVMPHNLYLHSGIVQTRAIGETLAEKREALKFATLDSTIALTFALVINAA ILILAAATFNKTGQTNVAELGEAHSLLAPLLGLAIAPTLFGVALLCCGINSTVTATLA GQIVMEGFLKMRLAPWLRRLITRGIAIIPAAGVTIAFGESGTSQLLILTQVVLSLQLS FAVFPLVMFTADRAKMGELCAPRWLSAFAWLIAVVIAALNVKLLFDFVG" misc_feature complement(1683971..1685278) /gene="mntH" /locus_tag="AGROH133_06670" /note="Natural resistance-associated macrophage protein; Region: Nramp; cl00836" /db_xref="CDD:193950" gene 1685692..1685916 /locus_tag="AGROH133_06682" /db_xref="GeneID:10267453" CDS 1685692..1685916 /locus_tag="AGROH133_06682" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278983.1" /db_xref="GI:325293119" /db_xref="GeneID:10267453" /translation="MRDGNKFSVANQPYRWPKYIMAQRRPRDWLMTISGVVLLVIVAA AVAMGYLVTSHPGKPEPNTGIIEENAAENA" gene complement(1685939..1687672) /locus_tag="AGROH133_06684" /db_xref="GeneID:10267454" CDS complement(1685939..1687672) /locus_tag="AGROH133_06684" /EC_number="3.6.3.-" /note="ABC-type multidrug transport system, ATPase and permease components" /codon_start=1 /transl_table=11 /product="lipid A export permease/ATP-binding protein MsbA" /protein_id="YP_004278984.1" /db_xref="GI:325293120" /db_xref="GeneID:10267454" /translation="MLRRFFAYYRPYRGLFILDFSCAVLSGVLELGFPMAVKAFVDVL LPGGEWGIILAASVGLLVIYVLNTGLMATVTYWGHMLGINIETDMRRLAFDHLQKLSF RYFDNQKTGHLVGRLTKDLEEIGEVAHHGPEDLFIAIMTFIGAFLLMLSVNVPLALVT AAVVPVTAWVTSRYGGRMTQNFRALYGRVGDFNARIEENVGGMRVVQAFANEDHERAL FEKDNQKYRRTKLDAYKIMAASTSLSYMSMRLTQMIVMICGAWFVLHGGLTEGGFVGF LLLVGVFFRPVEKINSVIETYPKGIAGFRRFTELLDTAPDITDAPDAIEAPALSGAIE YRHVGFGYAEGKQVLDNIDLKINAGETVAFVGPSGAGKTTLCSLLPRFYDVTSGSITI DGIDIRKMKLASLRNQIGIVQQDVFLFGGTIRENIEYGRLGASDVEIMDAARRARLDG VIEAMTMGLDTVIGERGVKLSGGQKQRLAIARMFLKNPPILILDEATSALDTETERAI QQSLTELAKGRTTLVIAHRLATIRDASRIVVVDQTGIAETGAHAELLAAKGHYSRLHE AQFSGHLQGLS" misc_feature complement(1685960..1687672) /locus_tag="AGROH133_06684" /note="ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132" /db_xref="CDD:31327" misc_feature complement(1686887..1687627) /locus_tag="AGROH133_06684" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(1685978..1686676) /locus_tag="AGROH133_06684" /note="MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic...; Region: ABCC_MsbA; cd03251" /db_xref="CDD:73010" misc_feature complement(1686554..1686577) /locus_tag="AGROH133_06684" /note="Walker A/P-loop; other site" /db_xref="CDD:73010" misc_feature complement(order(1686095..1686097,1686188..1686193, 1686431..1686433,1686551..1686559,1686563..1686568)) /locus_tag="AGROH133_06684" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73010" misc_feature complement(1686431..1686442) /locus_tag="AGROH133_06684" /note="Q-loop/lid; other site" /db_xref="CDD:73010" misc_feature complement(1686236..1686265) /locus_tag="AGROH133_06684" /note="ABC transporter signature motif; other site" /db_xref="CDD:73010" misc_feature complement(1686188..1686205) /locus_tag="AGROH133_06684" /note="Walker B; other site" /db_xref="CDD:73010" misc_feature complement(1686170..1686181) /locus_tag="AGROH133_06684" /note="D-loop; other site" /db_xref="CDD:73010" misc_feature complement(1686089..1686109) /locus_tag="AGROH133_06684" /note="H-loop/switch region; other site" /db_xref="CDD:73010" gene 1687902..1689140 /locus_tag="AGROH133_06689" /db_xref="GeneID:10267455" CDS 1687902..1689140 /locus_tag="AGROH133_06689" /note="Domain of unknown function DUF20; Predicted permease" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_004278985.1" /db_xref="GI:325293121" /db_xref="GeneID:10267455" /translation="MSNIDSRKPSGEPRWLGPASPTRIALIPPISAARWLLVLVALAG IYFFHGFLVPVLAALVIGFASWPVYTRLLRQVGGNTTLGASIAIILILTFLVVPIFIA ASYTASEIREWFGWAVHVNKVGAPVPDWIAALPGVGSWLGEQWVKYIGTPGAIGEVIQ LVSGANIGNIYRAILAAGNGAFHLVLTLLFMLIALFFVYRNGAGFSHQVDLVGERILP TRWERISRVVPATISSTVTGMTLIAIGEGIILGIAYWIAGVPSPVTLGVLTGVMALIP GGAPLSFTLVSIYLVASGSPAYGLGLFIWGSVELFIVDKTIRPKLVGGPIKLPFLPTF FGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVEISTGATVDVPPTPTAENDPLD DIVAREEDSNETTAFRKAAS" misc_feature 1688031..1689002 /locus_tag="AGROH133_06689" /note="Domain of unknown function DUF20; Region: UPF0118; cl00465" /db_xref="CDD:186015" gene complement(1689295..1689750) /locus_tag="AGROH133_06698" /db_xref="GeneID:10267456" CDS complement(1689295..1689750) /locus_tag="AGROH133_06698" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family; Acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase, GNAT family" /protein_id="YP_004278986.1" /db_xref="GI:325293122" /db_xref="GeneID:10267456" /translation="MAPEIKLETPRQEAVLRLIDLSNVYMASLYPAESNHLVDIGQLE KDNVSFFVARHGGRVVGCGALVEAGDGTAEVKRMFVDPEARGLRIGKLIMDTLIARGA ELGLTAIRLETGISQPEAIGLYRKAGFVEIEAFAPYKSDPLSLFMEKTL" misc_feature complement(1689325..1689693) /locus_tag="AGROH133_06698" /note="ribosomal-protein-alanine acetyltransferase; Region: rimI; TIGR01575" /db_xref="CDD:162430" misc_feature complement(1689415..1689603) /locus_tag="AGROH133_06698" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(1689478..1689483,1689511..1689519)) /locus_tag="AGROH133_06698" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 1689858..1690292 /locus_tag="AGROH133_06699" /db_xref="GeneID:10267457" CDS 1689858..1690292 /locus_tag="AGROH133_06699" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278987.1" /db_xref="GI:325293123" /db_xref="GeneID:10267457" /translation="MKTALVLMTFLGCDDTATDCHYLATSQQRWTSIELCDAVSEKEL ERFANASYPVVVAVCQTPGEQTPQTAGNAPATQPPAATAPAGTEEPPAQVTQKEEESL TKQAISRVSRILPSTEGVKHLLGTPVRMVENSYSWIAKRFEK" gene complement(1690296..1691450) /locus_tag="AGROH133_06700" /db_xref="GeneID:10267458" CDS complement(1690296..1691450) /locus_tag="AGROH133_06700" /note="Uncharacterised conserved protein UCP035865; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278988.1" /db_xref="GI:325293124" /db_xref="GeneID:10267458" /translation="MCFEAQVIVQAFLRWSEKAGSTERAKAASALGRAYLHSDMAREN RDAAYMAMTYLLDDPSPRVRLALAEALADDPDAPRAILVSLAEDQPEIACTVIARSPV LGEADLVDLAGRGESLTRAFIAARRGLPRGVCAALAEVGDLPETMILLENDDAFITPF SLRRIAERHGCNADIRDLLLCREVLPADTRHLLMARVSEALAGSALVHALIARNRADS IFREAEDSATILIAANVSSPELPALVEHLRQRLELTPALLIHAVCSGRLEFFTAAMVN LSGLDDRKVRAILATGRPHALKALFQSVGLLGDVVDVFIEATLMWRRAARSHLSQAAA SVSAELLAHFRNVDGSETLFELLHAVRKLTIAEERQKARHYAEALTVEAA" misc_feature complement(1690344..1691450) /locus_tag="AGROH133_06700" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5330" /db_xref="CDD:34910" misc_feature complement(1690446..1691177) /locus_tag="AGROH133_06700" /note="Uncharacterized protein conserved in bacteria (DUF2336); Region: DUF2336; pfam10098" /db_xref="CDD:150738" gene complement(1691560..1692171) /locus_tag="AGROH133_06701" /db_xref="GeneID:10267459" CDS complement(1691560..1692171) /locus_tag="AGROH133_06701" /note="FMN-binding split barrel, related; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278989.1" /db_xref="GI:325293125" /db_xref="GeneID:10267459" /translation="MFYTADTNQHGLPHDPFKAIVAPRPIGWIGSKGRDGSFNLSPYS FFNAISDRPKLVMFSSSGRKDSLRNVEETGVFTANLVSRHLVDRMNASSAPVNYDVDE FRLAGLTAVDGRVVDAPFVGEALAVLECRVTEIIQLKDIDGTPADSWMVIGQVMAIHI DDAIIRDGRIDMGLARPVARMGYMDYCDGGSDVFQLKRPSTAP" misc_feature complement(<1691707..1692153) /locus_tag="AGROH133_06701" /note="Flavin Reductases; Region: FlaRed; cl00801" /db_xref="CDD:193940" gene complement(1692171..1692752) /locus_tag="AGROH133_06702" /db_xref="GeneID:10267460" CDS complement(1692171..1692752) /locus_tag="AGROH133_06702" /EC_number="1.-.-.-" /note="Nitroreductase" /codon_start=1 /transl_table=11 /product="nitroreductase family protein" /protein_id="YP_004278990.1" /db_xref="GI:325293126" /db_xref="GeneID:10267460" /translation="MTSDIKLLDYLKVRRSTPALQLAEPGPSKAEIEEILRLAVRVPD HGKLAPWRFIVYRGEDRVRLGEEALRIALEKNPELDLQQQDAERTRFTRAPVVIAVIS TAKPHFKIPEWEQIMSAGALCLNLIFAANANGFAANWLTEWLAFDPAFLSELGIAADE KVAGYIHIGSTTFPLVERPRPELADVVTWVGDV" misc_feature complement(1692243..1692731) /locus_tag="AGROH133_06702" /note="Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-...; Region: Arsenite_oxidase; cd02135" /db_xref="CDD:48382" misc_feature complement(order(1692327..1692332,1692615..1692617, 1692696..1692698,1692702..1692704,1692708..1692710)) /locus_tag="AGROH133_06702" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:48382" gene 1692863..1693843 /locus_tag="AGROH133_06703" /db_xref="GeneID:10267461" CDS 1692863..1693843 /locus_tag="AGROH133_06703" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278991.1" /db_xref="GI:325293127" /db_xref="GeneID:10267461" /translation="MSAIKIAARLAIAFAAIGVLSQAAFSQDAFKDFKQLGGTPKMPK LNAFTAPTAPNAPASTARDIDMEAKLTSEGEAVKEGLSWRVFSPIPGADGKLPMLASS EGGSAQFHLVPGEYFVNVAFGRAGVTKKLNVPSSGNVQKQVLILDAGGFVLNAIAGSD KQISANQLKFSVYSSDARPDGERGLVMADIKPNTVVRLNAGTYHVVSEYGNVNAVVRA DIQVEAGKLTEATLQHQAAQITLKLVSEQGGEAIADTAWSVLNGGGDVVNESVSAFST MVLAEGEYTAMARNKDKVYQRNFKVTSGRDADVEVLMKDQAPEDMTGDFE" gene complement(1693901..1695904) /gene="thrS" /locus_tag="AGROH133_06706" /db_xref="GeneID:10267462" CDS complement(1693901..1695904) /gene="thrS" /locus_tag="AGROH133_06706" /EC_number="6.1.1.3" /note="catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)" /codon_start=1 /transl_table=11 /product="Threonyl-tRNA synthetase" /protein_id="YP_004278992.1" /db_xref="GI:325293128" /db_xref="GeneID:10267462" /translation="MSQTVSLTFPDGSVRSYPAGTTGREVAESISKSLAKKAVAIALD GTVRDLSEAITDGKIEIVTREDSRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIEN GFYYDFAKNEPFTPEDLPKIEKRMKEIIQRNKPFTREVWSREKAKEVFAAKGENYKVE LVDAIPEGQDLKIYYQGDWFDLCRGPHMASTGQVGTAFKLMKVAGAYWRGDSNNAMLS RIYGTAWATQEELDNYLHVLAEAEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRMF QTLTAYMRRRLANTYQEVNAPQVLDKSLWETSGHWGWYQENMFAVKSAHAFTHPDDED ADQRVFALKPMNCPGHVQIFKHGLKSYREMPVRLAEFGNVHRYEASGALHGLMRVRGF TQDDAHVFCTEEQMAAECLRINDLILSVYEDFGFSEIVVKLSTRPEKRVGSDDLWDRA ESVMMEVLKTIEEQSGGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNL PERFGAFYIDQNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPLQVVVATI TSDADDYGREVAEALREAGMAVETDFRNEKINYKVREHSVTKVPVIIVCGRKEAEERT VNIRRLGSQNQTPMSLEDAITSLVEEATPPDVKRKLAAKKQVA" misc_feature complement(1693934..1695892) /gene="thrS" /locus_tag="AGROH133_06706" /note="threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK00413" /db_xref="CDD:179011" misc_feature complement(1695716..1695892) /gene="thrS" /locus_tag="AGROH133_06706" /note="TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase...; Region: TGS_ThrRS_N; cd01667" /db_xref="CDD:133437" misc_feature complement(1695242..1695394) /gene="thrS" /locus_tag="AGROH133_06706" /note="Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; cl08469" /db_xref="CDD:158351" misc_feature complement(1694231..1695172) /gene="thrS" /locus_tag="AGROH133_06706" /note="Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771" /db_xref="CDD:29816" misc_feature complement(order(1694288..1694290,1694297..1694302, 1694396..1694398,1694408..1694413,1694420..1694422, 1694723..1694725,1694729..1694731,1694738..1694746, 1694759..1694767,1694771..1694773,1694777..1694779, 1694873..1694875,1694951..1694956,1694963..1694965, 1694975..1694977,1695125..1695127,1695161..1695163)) /gene="thrS" /locus_tag="AGROH133_06706" /note="active site" /db_xref="CDD:29816" misc_feature complement(order(1694348..1694350,1694354..1694356, 1694519..1694527,1694651..1694653,1694732..1694737, 1694765..1694767,1694774..1694776,1694780..1694782, 1694819..1694827,1694831..1694839,1694846..1694851, 1694885..1694887,1694891..1694902,1694942..1694950, 1695002..1695004,1695008..1695016,1695020..1695022, 1695026..1695031,1695038..1695043,1695086..1695088, 1695095..1695097,1695101..1695106,1695110..1695112, 1695116..1695118,1695122..1695130,1695134..1695136, 1695149..1695151)) /gene="thrS" /locus_tag="AGROH133_06706" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29816" misc_feature complement(1695008..1695031) /gene="thrS" /locus_tag="AGROH133_06706" /note="motif 1; other site" /db_xref="CDD:29816" misc_feature complement(1694771..1694782) /gene="thrS" /locus_tag="AGROH133_06706" /note="motif 2; other site" /db_xref="CDD:29816" misc_feature complement(1694288..1694302) /gene="thrS" /locus_tag="AGROH133_06706" /note="motif 3; other site" /db_xref="CDD:29816" misc_feature complement(1693961..1694233) /gene="thrS" /locus_tag="AGROH133_06706" /note="ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860" /db_xref="CDD:29800" misc_feature complement(order(1694021..1694023,1694027..1694029, 1694057..1694059,1694081..1694083,1694099..1694101, 1694204..1694209)) /gene="thrS" /locus_tag="AGROH133_06706" /note="anticodon binding site; other site" /db_xref="CDD:29800" gene complement(1696037..1696558) /locus_tag="AGROH133_06707" /db_xref="GeneID:10267463" CDS complement(1696037..1696558) /locus_tag="AGROH133_06707" /note="Protein of unknown function DUF1697; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278993.1" /db_xref="GI:325293129" /db_xref="GeneID:10267463" /translation="MTYVALLHSIVLGAGKRLIMADLREMAQDLGFEECRTLVATGNL VFRAPEAPVCEIEEALERAFEKRFGKHVDILVRSAPDWLALTATNPFPDGNPPDVCVR VMRKPLAGDYLGLLEKYRQKEKIAIVGGDLWIDFCGKPSESRLLSALTTKKLGIGTTR NANTVNGIAEMLR" misc_feature complement(1696040..1696555) /locus_tag="AGROH133_06707" /note="Protein of unknown function (DUF1697); Region: DUF1697; cl01557" /db_xref="CDD:154470" gene complement(1696555..1696914) /locus_tag="AGROH133_06708" /db_xref="GeneID:10267464" CDS complement(1696555..1696914) /locus_tag="AGROH133_06708" /note="Protein of unknown function DUF37; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004278994.1" /db_xref="GI:325293130" /db_xref="GeneID:10267464" /translation="MCGEPDCGHQKTGEKVGRSRNWGGVFAKTPGRLFGVGFIRLYQL TLSGFVGNSCRHIPTCSEYGYEAIARHGLWPGGWMTLFRVARCGPGGTSGLDPVPETL AADKHWWTPWRYWMLHR" misc_feature complement(1696558..1696839) /locus_tag="AGROH133_06708" /note="Domain of unknown function DUF37; Region: DUF37; cl00506" /db_xref="CDD:186043" gene complement(1696918..1697367) /gene="nifU" /locus_tag="AGROH133_06709" /db_xref="GeneID:10267465" CDS complement(1696918..1697367) /gene="nifU" /locus_tag="AGROH133_06709" /note="NIF system FeS cluster assembly, NifU, N-terminal; NifU homolog involved in Fe-S cluster formation" /codon_start=1 /transl_table=11 /product="NIFU-like protein" /protein_id="YP_004278995.1" /db_xref="GI:325293131" /db_xref="GeneID:10267465" /translation="MMDDIYNNRILEFAGNIPLTGVLDDADASAEKHSRLCGSKLKVY LKVEGGIVTAFSHEVRACALGQASASIMAHHVVGASSGEIRQAREDMLAMLKQGGEGP TGRFEDMRVLSPVRDFKARHASTMLTFEAVVDALDQIESRPVLNAAG" misc_feature complement(1696963..1697355) /gene="nifU" /locus_tag="AGROH133_06709" /note="Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664" /db_xref="CDD:143480" misc_feature complement(order(1696996..1697001,1697005..1697010, 1697176..1697178,1697182..1697184,1697254..1697259, 1697332..1697337,1697344..1697355)) /gene="nifU" /locus_tag="AGROH133_06709" /note="trimerization site [polypeptide binding]; other site" /db_xref="CDD:143480" misc_feature complement(order(1696996..1696998,1697182..1697184, 1697257..1697259)) /gene="nifU" /locus_tag="AGROH133_06709" /note="active site" /db_xref="CDD:143480" gene 1697648..1698274 /gene="folE" /locus_tag="AGROH133_06710" /db_xref="GeneID:10267466" CDS 1697648..1698274 /gene="folE" /locus_tag="AGROH133_06710" /EC_number="3.5.4.16" /note="involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase I" /protein_id="YP_004278996.1" /db_xref="GI:325293132" /db_xref="GeneID:10267466" /translation="MDAIVKNFPGAGAKPDVAEARPSQTEAEEAVRVLLRWAGENPAR EGLLDTPKRVAKAYRELFAGYELNVQDVLGTTFEEVGGYDDVVLVRDIPFFSHCEHHM VPIVGKAHVAYLPAGRVLGLSKIARVVEIFGRRLQTQENMTAQIARSIEETLKPRGVA VMIDAEHMCMSMRGVNKQGSTTLTTSFTGTFKNDPAEQVRFMTMVRNR" misc_feature 1697729..1698265 /gene="folE" /locus_tag="AGROH133_06710" /note="GTP cyclohydrolase I; Provisional; Region: PLN03044" /db_xref="CDD:178607" misc_feature 1697729..1698265 /gene="folE" /locus_tag="AGROH133_06710" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" misc_feature order(1697960..1697962,1697966..1697968,1698134..1698136, 1698203..1698205) /gene="folE" /locus_tag="AGROH133_06710" /note="active site" /db_xref="CDD:29764" gene 1698303..1698755 /gene="hisI" /locus_tag="AGROH133_06711" /db_xref="GeneID:10267467" CDS 1698303..1698755 /gene="hisI" /locus_tag="AGROH133_06711" /EC_number="3.5.4.19" /note="PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers" /codon_start=1 /transl_table=11 /product="Phosphoribosyl-AMP cyclohydrolase" /protein_id="YP_004278997.1" /db_xref="GI:325293133" /db_xref="GeneID:10267467" /translation="MSISFPSAPADKEVLENSGLFSPKFDAHGLVTAVVTDARDGELL MVAHMNAQALSLTLETGIAHYYSRSRDKIWKKGETSGNLQTVKEFRTDCDQDAVWLKV SVAGHDATCHTGRRSCFYRTVELADGNAVTRITDDTRHFDPATTYSGT" misc_feature 1698360..1698746 /gene="hisI" /locus_tag="AGROH133_06711" /note="Phosphoribosyl-AMP cyclohydrolase; Region: PRA-CH; cl00344" /db_xref="CDD:193779" gene 1698854..1699780 /locus_tag="AGROH133_06712" /db_xref="GeneID:10267468" CDS 1698854..1699780 /locus_tag="AGROH133_06712" /note="Patatin-like phospholipase; Predicted esterase of the alpha-beta hydrolase superfamily" /codon_start=1 /transl_table=11 /product="phosphoesterase protein" /protein_id="YP_004278998.1" /db_xref="GI:325293134" /db_xref="GeneID:10267468" /translation="MLGWGSNRHSALAAGSTETIVNEIVDTRRIALALGGGAARGWAH IGVLRALDEAGVKIGMIAGTSIGALVGGCYLAGKLDELEEFARSLTMRRIAGLLDLTI GGGGLFGGMRLTKRMQEHLEGLRVENLEHPFIAVATELRTGHEVWIHQGDLVTALRSS YALPGIFEPVQCNGRTLIDGALVNPVPVSVCRAYEQALVVAVNLNYDLFGRSAVVKHS SSPPNGAAPSLEGPPRPGLPGVMVQAFNIIQDRISRSRLAGDPPDLMLHPRINDIGLS EFHRASEAIDRGYEETRARVPELERMQQAFRR" misc_feature 1698977..1699465 /locus_tag="AGROH133_06712" /note="Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396" /db_xref="CDD:196212" misc_feature 1699040..1699054 /locus_tag="AGROH133_06712" /note="nucleophile elbow; other site" /db_xref="CDD:132836" gene complement(1699917..1700351) /locus_tag="AGROH133_06713" /db_xref="GeneID:10267469" CDS complement(1699917..1700351) /locus_tag="AGROH133_06713" /EC_number="1.1.1.205" /note="Cystathionine beta-synthase, core; FOG: CBS domain" /codon_start=1 /transl_table=11 /product="inosine-5`-monophosphate dehydrogenase protein" /protein_id="YP_004278999.1" /db_xref="GI:325293135" /db_xref="GeneID:10267469" /translation="MATFVKDLLDRKGRNVVTVGPSVSIGEAAATLNAHKIGALVVTD ADGVVLGIFTERDLVKVVAGEGAASLLQSVSVAMTKNVIRCHHNSTTDELMEIMTGGR FRHIPVEDDGRLAGIISIGDVVKARIGEIEAEAEHIKAYIAG" misc_feature complement(1699980..1700324) /locus_tag="AGROH133_06713" /note="FOG: CBS domain [General function prediction only]; Region: COG0517" /db_xref="CDD:30863" misc_feature complement(1699974..1700312) /locus_tag="AGROH133_06713" /note="The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-...; Region: CBS_pair_10; cd04623" /db_xref="CDD:73122" gene complement(1700506..1701279) /locus_tag="AGROH133_06714" /db_xref="GeneID:10267470" CDS complement(1700506..1701279) /locus_tag="AGROH133_06714" /note="Peptidase S54, Rhomboid family; Uncharacterized membrane protein (homolog of Drosophila rhomboid)" /codon_start=1 /transl_table=11 /product="rhombiod family transmembrane protein" /protein_id="YP_004279000.1" /db_xref="GI:325293136" /db_xref="GeneID:10267470" /translation="MSNGDGEQPPVSESQELKEDAHNPVFNLPPLLVGILAALLLAFV VPAYLLSEDGNGWFIFTFGFIPLRYAVPLSQQGLEWLWTPVTYSFLHGGIEHILFNGL WLMAFGAPVLRRIGTLRFVLLWCISAAVSAFGHAALNWGDVTVLIGASGVVSALMGAA CRFAFPSRGGYSASFGHLMPRQSIVAALSNRTVLIFTLMWLFGNVLIAVGVPLFGDVG GEVAWDAHVFGFLLGFLFFGLFDRPIRGNLSSGSVEHPL" misc_feature complement(1700599..>1701099) /locus_tag="AGROH133_06714" /note="Rhomboid family; Region: Rhomboid; cl11446" /db_xref="CDD:196238" gene 1701639..1702196 /locus_tag="AGROH133_06722" /db_xref="GeneID:10267471" CDS 1701639..1702196 /locus_tag="AGROH133_06722" /note="Protein of unknown function DUF1457; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279001.1" /db_xref="GI:325293137" /db_xref="GeneID:10267471" /translation="MKSMAGLEIYAYWDTLRGNKPAPRREDFDPAKLKHHLGDLFILT DKGERTPFFRLAGTHLCDLFGRELRDSPFSDLWPAASATFPCRVARGILQHQLPVVFD IEAEDDHGAAPLAFEMLLLPLSSDNDTAPRLLGALLPERPRHEFAAPISCLVMKSSRL LRMDIAPTTYSTNARTAVMPHAVTR" misc_feature 1701639..1702163 /locus_tag="AGROH133_06722" /note="PAS domain; Region: PAS_5; cl11565" /db_xref="CDD:142770" gene 1702380..1702997 /locus_tag="AGROH133_06723" /db_xref="GeneID:10267472" CDS 1702380..1702997 /locus_tag="AGROH133_06723" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279002.1" /db_xref="GI:325293138" /db_xref="GeneID:10267472" /translation="MFSSRSVNTAQTLRPVEEVHFDDPVRVSFTGRLMLPDHQEYDCT ATEMTAERALFACSGIARNGDRVISYLQHIGRIEGTVTALTASGFVIAINAPERKREK LAAQLAWIAKRQLLGLPEDRRHDRLTPRNTRAHLMLEDGVLLACRLIDLSLSGAAIEI ENRPPLGTRVQLGKNMSGKIVRHFMEGVAVEFDRVQSPDALIEFL" misc_feature 1702737..1702994 /locus_tag="AGROH133_06723" /note="PilZ domain; Region: PilZ; cl01260" /db_xref="CDD:194086" gene complement(1703331..1703504) /locus_tag="AGROH133_06724" /db_xref="GeneID:10267473" CDS complement(1703331..1703504) /locus_tag="AGROH133_06724" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279003.1" /db_xref="GI:325293139" /db_xref="GeneID:10267473" /translation="MLGSQAAERIEDADFPFWDWCFKSGQGKKAAKKTSRKLFLLEKM PGAGFSSAVLREN" gene 1703747..1704355 /locus_tag="AGROH133_06725" /db_xref="GeneID:10267474" CDS 1703747..1704355 /locus_tag="AGROH133_06725" /note="Predicted transglutaminase-like cysteine peptidase, BTLCP, Bacterial protein of unknown function (DUF920); Predicted periplasmic protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279004.1" /db_xref="GI:325293140" /db_xref="GeneID:10267474" /translation="MNKNNRFGFFLIAFIVSAIAHQASASPSAAMRVIGKANPPIGHY EFCQTYQSECQPTSLDNGPMKLTEERWKTMLDVNYTANTTITPMTDMEIYGVEERWAY PATVGDCEDFVLLKRKMLMNKGFSANNLLITVVLQPNGEGHAVLTVRTDRGDFVLDNM RNKVMNWSETEYTYLKRQDTANPGRWVKIQDGRATTAVGGIN" misc_feature 1703837..1704343 /locus_tag="AGROH133_06725" /note="Bacterial protein of unknown function (DUF920); Region: DUF920; cl01479" /db_xref="CDD:154425" gene complement(1704450..1704887) /locus_tag="AGROH133_06728" /db_xref="GeneID:10267475" CDS complement(1704450..1704887) /locus_tag="AGROH133_06728" /note="Protein of unknown function (DUF1489); Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279005.1" /db_xref="GI:325293141" /db_xref="GeneID:10267475" /translation="MPLHLIKLCVGADSLQDLRDWVAHRSLTAIAAGLEPHSVHTTRM IPKRLDELLEGGSLYWVIKGQVQARQKLLDIRSFKGDDGITRCDLILGPEVIETSPAP KRPFQGWRYLKDNEAPRDLGGGDFGGEEMPSDLKRELAELGLL" misc_feature complement(1704453..1704887) /locus_tag="AGROH133_06728" /note="Protein of unknown function (DUF1489); Region: DUF1489; cl11570" /db_xref="CDD:159550" gene complement(1704953..1706356) /gene="sdaA" /locus_tag="AGROH133_06729" /db_xref="GeneID:10267476" CDS complement(1704953..1706356) /gene="sdaA" /locus_tag="AGROH133_06729" /EC_number="4.3.1.17" /note="Iron-sulphur-dependent L-serine dehydratase single chain form, Serine dehydratase alpha chain; L-serine deaminase" /codon_start=1 /transl_table=11 /product="L-serine dehydratase" /protein_id="YP_004279006.1" /db_xref="GI:325293142" /db_xref="GeneID:10267476" /translation="MFLSVFDVFKIGIGPSSSHTMGPMTAANRFLALILGDEWPRPAG ASVSRLKVSLHGSLAFTGIGHGTGRAVILGLTGERPDLVDPDAMDPIIEKVEKAGTVS PPGHPSYEFNPAEDLVFDKKNPLPGHANGMTFSAFDNQGRLLLKRIYYSVGGGFVVTD TELEAIKQRGKTIDNGPRVPYPFATAREMLEMAGRSGRTIAQMKRANEETVISRDELN ERLDQIWEAMNGCIERGLKVDGIMPGGLKVRRRARSIYEKLNEEWRSNRLNPVMANDW LSVYAMAVNEENAAGGRVVTAPTNGAAGVVPATVRYFRHFHEDATVDDVRDFLLTAAA IGGIIKHNASISGAEVGCQGEVGSAAAMAAAGLAAVMGGSPEQVENAAEIALEHHLGM TCDPIAGLVQVPCIERNALGAVKAVTAASLALKGDGQHFVPLDACIETMRQTGNDMSD KYKETSTGGLAVNVVEC" misc_feature complement(1704965..1706347) /gene="sdaA" /locus_tag="AGROH133_06729" /note="L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720" /db_xref="CDD:188076" misc_feature complement(1705862..1706326) /gene="sdaA" /locus_tag="AGROH133_06729" /note="Serine dehydratase beta chain; Region: SDH_beta; pfam03315" /db_xref="CDD:190598" misc_feature complement(1704968..1705774) /gene="sdaA" /locus_tag="AGROH133_06729" /note="Serine dehydratase alpha chain; Region: SDH_alpha; cl12120" /db_xref="CDD:196345" gene 1706441..1706743 /locus_tag="AGROH133_06730" /db_xref="GeneID:10267477" CDS 1706441..1706743 /locus_tag="AGROH133_06730" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279007.1" /db_xref="GI:325293143" /db_xref="GeneID:10267477" /translation="MQLRHTGRRNENSTVSRGNRAVSKPVIHEKCLWAAKNVRQCEKC GKACKRAQGDGPTGFLSGFFHDYSSYSLSGRSSRPGPLGEAFIKIRRRTQMQKAAK" gene 1707011..1707361 /locus_tag="AGROH133_06731" /db_xref="GeneID:10267478" CDS 1707011..1707361 /locus_tag="AGROH133_06731" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279008.1" /db_xref="GI:325293144" /db_xref="GeneID:10267478" /translation="MQQASSFPDRETVASKLASLASEDKAWVLLLMENVLQDENLLAG LNLYLDQQANARFLNSLKLETSGEWLGCNAPARLQIRITEAAKASQHPAYLAFRKGLT ASAGLEKAYPKAPI" gene complement(1707363..1708133) /locus_tag="AGROH133_06732" /db_xref="GeneID:10267479" CDS complement(1707363..1708133) /locus_tag="AGROH133_06732" /note="Predicted periplasmic protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279009.1" /db_xref="GI:325293145" /db_xref="GeneID:10267479" /translation="MMKRLVTKRLIGLLLPLLLPFSAEAGGQADFCKTMEHAGGRYIV CSFDPAKSMIRIYDRDHVSGEGYRSFSDLSSALWRQHMFSVFAMNGGMYHSDYSPVGL FVENGVERSPIITGGGWGNFHLLPNGVFYLKGAMAGVLETRAYVSAGLKPDFATQSGP MLVIDGKLHPRFLPDSDSLKRRNGVGVSRDGMVHFAISENTVRFYDFATLFRDALDAP NALYLDGTISSVDIPAMKRRDSLFAMGPIIAVVDRVPD" misc_feature complement(1707372..1708073) /locus_tag="AGROH133_06732" /note="Predicted periplasmic protein (DUF2233); Region: DUF2233; cl10481" /db_xref="CDD:195974" gene complement(1708266..1708427) /gene="ecnB" /locus_tag="AGROH133_06734" /db_xref="GeneID:10267480" CDS complement(1708266..1708427) /gene="ecnB" /locus_tag="AGROH133_06734" /note="Entericidin EcnAB" /codon_start=1 /transl_table=11 /product="entericidin B signal peptide protein" /protein_id="YP_004279010.1" /db_xref="GI:325293146" /db_xref="GeneID:10267480" /translation="MITRILSTVFVALLTVVTLSSCGNTIRGVGRDTANAVDATQDAG RSVDRAARR" gene 1708611..1709396 /locus_tag="AGROH133_06736" /db_xref="GeneID:10267481" CDS 1708611..1709396 /locus_tag="AGROH133_06736" /note="Formyl transferase, N-terminal; methionyl-tRNA formyltransferase" /codon_start=1 /transl_table=11 /product="formyltransferase protein" /protein_id="YP_004279011.1" /db_xref="GI:325293147" /db_xref="GeneID:10267481" /translation="MGDMTEINNRLLVMTAGGLNPNVMINALAARFPDIHVIVEQAES KSAILKRRARRLGWVTAAGQIATMIASRLGKRFTVRRTNEIIAEHGLSADLGQAVPVT HVASLNDEECHKAINTLQPAAIFTISCRLLTPATLQALRCPVINFHAGINPAYRGQMG GYWALVEKDRGNFGATVHLVDKGVDTGATLYEKRLKPSPSDTIATYPLLLTAASVDIA VSAIEDALSGSLAPQPPLPGKSVLRFPPTIWTWLWNGLTKRVW" misc_feature 1708638..>1708736 /locus_tag="AGROH133_06736" /note="Formyltransferase, catalytic core domain; Region: FMT_core; cl00395" /db_xref="CDD:187897" misc_feature 1708893..1709285 /locus_tag="AGROH133_06736" /note="Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Region: FMT_core_like_3; cd08653" /db_xref="CDD:187721" misc_feature order(1708983..1709006,1709019..1709021,1709046..1709057, 1709079..1709081,1709142..1709144,1709148..1709153, 1709160..1709165) /locus_tag="AGROH133_06736" /note="putative active site [active]" /db_xref="CDD:187721" misc_feature order(1708983..1708985,1708992..1708994,1708998..1709006, 1709019..1709021,1709046..1709048,1709148..1709153, 1709160..1709165) /locus_tag="AGROH133_06736" /note="putative cosubstrate binding site; other site" /db_xref="CDD:187721" misc_feature order(1708986..1708991,1709049..1709051,1709055..1709057, 1709250..1709252) /locus_tag="AGROH133_06736" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187721" misc_feature order(1709046..1709048,1709052..1709054,1709163..1709165) /locus_tag="AGROH133_06736" /note="catalytic site [active]" /db_xref="CDD:187721" gene 1709463..1710422 /gene="metF" /locus_tag="AGROH133_06737" /db_xref="GeneID:10267482" CDS 1709463..1710422 /gene="metF" /locus_tag="AGROH133_06737" /EC_number="1.5.1.20" /note="5,10-methylenetetrahydrofolate reductase" /codon_start=1 /transl_table=11 /product="methylenetetrahydrofolate reductase" /protein_id="YP_004279012.1" /db_xref="GI:325293148" /db_xref="GeneID:10267482" /translation="MPQQAKTWAKKRCMIRKRTKFKLHDISTSPAIAASIEASPAQVL GPASLAGIFPQGVRVYLTDTGQASQDRLVDAAKHLRDLGYTPVPHLAARRISSRVEFE EQVKRLAGEAGVSDVLVVGGGVATPAGPFASSMDMLSTGILDRCGINQIAIAGHPEGS PDFSDETATAALKLKYDFAERSDAAMRIVTQFGFDPARFIAWAEGLAASGIDLPVHIG VSGPARITTLLKYAALCGVGNSIAYLKKNALSLTTLAKGHSPESVVGPIERHWQANPA GPIRQIHVFPFGGLQNSADWLAGRGSWQTGDADFSAKRGTVAI" misc_feature 1709634..1710353 /gene="metF" /locus_tag="AGROH133_06737" /note="Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine...; Region: MTHFR; cl00246" /db_xref="CDD:189071" misc_feature order(1709649..1709651,1709727..1709729,1709799..1709807, 1709859..1709864,1709922..1709924,1709928..1709930, 1709940..1709942,1709946..1709948,1709964..1709966, 1709973..1709975,1709982..1709987,1710027..1710029, 1710033..1710035,1710315..1710317) /gene="metF" /locus_tag="AGROH133_06737" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:29637" gene complement(1710485..1711381) /locus_tag="AGROH133_06738" /db_xref="GeneID:10267483" CDS complement(1710485..1711381) /locus_tag="AGROH133_06738" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004279013.1" /db_xref="GI:325293149" /db_xref="GeneID:10267483" /translation="MTVTFRQPLPLLDNDILRTFVAIAETGNFSTAAEVVFRTPSAVS MQIKKLEEQLKTTLFLRDARSVTLTAHGETLLTYARRMIALSNEAVSRFVMPELSGVV RLGAPEDIGERGLLPGILKRFAEVFPGIMIDVTIDSSSNLYKRMDERRLDLALVNCAS HPLRDTGEVLMRERLVWAGAKCGTAYLRDPLPISIWEEGCIWRSEAINSLEKRGRNFR VAYLSGHTMAQRAAIAADLAIAPLPRSYVQNDMVILSDKEGLPELGYFDIRLITGERP SRPILAVAESIRNAFVEVAKAA" misc_feature complement(1711163..1711333) /locus_tag="AGROH133_06738" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1710521..1711081) /locus_tag="AGROH133_06738" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(1710677..1710682,1710686..1710691, 1710707..1710724,1710974..1710994,1710998..1711000, 1711010..1711012,1711019..1711024,1711028..1711033)) /locus_tag="AGROH133_06738" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 1711663..1711881 /locus_tag="AGROH133_06739" /db_xref="GeneID:10267484" CDS 1711663..1711881 /locus_tag="AGROH133_06739" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279014.1" /db_xref="GI:325293150" /db_xref="GeneID:10267484" /translation="MAMIHYHPAASRSSQRPSTGSWLQRLSGQISALHTSWKRARMLR ALEGLPPETLKDIGWPTTDSNRIRVIRK" gene 1712154..1713191 /locus_tag="AGROH133_06740" /db_xref="GeneID:10267485" CDS 1712154..1713191 /locus_tag="AGROH133_06740" /note="ThiJ/PfpI; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004279015.1" /db_xref="GI:325293151" /db_xref="GeneID:10267485" /translation="MSRNSQKKRSIVFFLIPQFTMLPFAAAVETLRIANRMLGYQAYE WRLASLDGQKVMSSSGICLEVDTCLADERRYVSGENRVEMAIICSGIDVDQHINKSVN AWLREAYNRGIAIGSLCTAAHILAQAGLLNGKRCAIHWENLPGFSEAFPQVEVYADLF EVDSNIYTCAGGTASLDMMLSLIGQDFGENLVNRVCEQQLTDRVRSPNDRQRLPLRAR LGVQNSKVLSIIELMEGNLSEPLSLLDIADAADLSRRQVERLFRQEMGRSPARYYLEI RLDRARHLLVQSAMPVVEVAVACGFVSASHFSKCYREIYNRTPQQERAERKLLISASR MATASQGKAAH" misc_feature 1712154..1713128 /locus_tag="AGROH133_06740" /note="Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: COG4977" /db_xref="CDD:34583" misc_feature 1712184..1712759 /locus_tag="AGROH133_06740" /note="AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GATase1_AraC_ArgR_like; cd03136" /db_xref="CDD:153230" misc_feature 1712508..1712510 /locus_tag="AGROH133_06740" /note="conserved cys residue [active]" /db_xref="CDD:153230" misc_feature 1713012..1713122 /locus_tag="AGROH133_06740" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene complement(1713353..1714828) /locus_tag="AGROH133_06744" /db_xref="GeneID:10267486" CDS complement(1713353..1714828) /locus_tag="AGROH133_06744" /note="Carbohydrate kinase; Predicted sugar kinase" /codon_start=1 /transl_table=11 /product="carbohydrate kinase, YjeF related protein" /protein_id="YP_004279016.1" /db_xref="GI:325293152" /db_xref="GeneID:10267486" /translation="MKSLLNLSLIDPAVMARIDAASGQSGIPLYDLMERAGQAVAASA LRHYPDALRFVVLCGGGNNGGDGYVAARSLVQSGATVAVHHLGHVTAMKGDARTAFEG SGATALPLGDYVPMAGDVVIDAVFGAGLSREIPSELRRVIDAVTRAAVPVLAVDLPSG LCGRRGGPLGASFKAERTVTFMARKPGHLLMPGRELCGTLEVFDIGIPSRILAAHAGS VAENDPLVWRDALPRSEMETHKFRRGHLTVFSGPPHATGASRMTAIAALKAGAGIVTI AAPKQALDVLSVTLTAVMSFGLDDADDLRHWLDDKRHGAFVLGPGFGDLEKARQFVSL LGEKMVVLDADAITAFKDCPETLFDRMISGAGKFVLTPHEGEFARLFPDLAADTSLSK IEKAQTASARCGAVLVYKGADTVIAAPDGRALVNTNAPSSLATAGSGDVLAGIIGALL AQGTPAFEAAAAGVWLHGEAGSRAGAGMTAEDLAHAVRPFA" misc_feature complement(1714226..1714804) /locus_tag="AGROH133_06744" /note="YjeF-related protein N-terminus; Region: YjeF_N; cl00318" /db_xref="CDD:193767" misc_feature complement(1713380..1714768) /locus_tag="AGROH133_06744" /note="putative carbohydrate kinase; Provisional; Region: PRK10565" /db_xref="CDD:182554" misc_feature complement(1713368..1714123) /locus_tag="AGROH133_06744" /note="B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily; Region: YXKO-related; cd01171" /db_xref="CDD:29355" misc_feature complement(order(1713509..1713511,1713518..1713520, 1714046..1714048)) /locus_tag="AGROH133_06744" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:29355" misc_feature complement(order(1713425..1713427,1713503..1713505, 1713512..1713517,1713599..1713601,1713710..1713712)) /locus_tag="AGROH133_06744" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:29355" gene complement(1714942..1715097) /locus_tag="AGROH133_06745" /db_xref="GeneID:10267487" CDS complement(1714942..1715097) /locus_tag="AGROH133_06745" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279017.1" /db_xref="GI:325293153" /db_xref="GeneID:10267487" /translation="MKKKLRLPGFLAQNAFAFCGFPANFSPKPEKSVINSAGFPYFSY VEYFGMH" gene 1715187..1715525 /gene="glnB" /locus_tag="AGROH133_06746" /db_xref="GeneID:10267488" CDS 1715187..1715525 /gene="glnB" /locus_tag="AGROH133_06746" /note="Nitrogen regulatory PII-like, alpha/beta" /codon_start=1 /transl_table=11 /product="Nitrogen regulatory protein PII" /protein_id="YP_004279018.1" /db_xref="GI:325293154" /db_xref="GeneID:10267488" /translation="MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHTE LYRGAEYVVDFLPKVKVEVVLADENAEAVIEAIRNAAQTGRIGDGKIFVSNVEEVIRI RTGETGVDAI" misc_feature 1715196..1715501 /gene="glnB" /locus_tag="AGROH133_06746" /note="Nitrogen regulatory protein P-II; Region: P-II; cl00412" /db_xref="CDD:193807" gene 1715600..1717009 /gene="glnA" /locus_tag="AGROH133_06747" /db_xref="GeneID:10267489" CDS 1715600..1717009 /gene="glnA" /locus_tag="AGROH133_06747" /EC_number="6.3.1.2" /note="Glutamine synthetase type I, catalytic domain" /codon_start=1 /transl_table=11 /product="Glutamine synthetase" /protein_id="YP_004279019.1" /db_xref="GI:325293155" /db_xref="GeneID:10267489" /translation="MTTANDILKQIKDNDIKFVDLRFTDPKGKLQHVTMDVVCVDEDM FADGVMFDGSSIAGWKAINESDMVLMPDPATAHTDPFFAQSTLVILCDILDPVSGEAY NRDPRGTAKKAEAYLKASGIGDTIFVGPEPEFFVFDDVKYKADPYNTGFKLDSSELPS NDDTDYETGNLGHRPRVKGGYFPVPPIDSLQDMRSEMLTVLAEMGVVVEKHHHEVASA QHELGVKFDTMVSSADKMQIYKYVVHQVANAYGKTATFMPKPIFGDNGSGMHVHQSIW KGGKPTFAGDEYAGLSENCLYYIGGIIKHAKAINAFTNPTTNSYKRLVPGYEAPVLLA YSARNRSASCRIPFGSNPKAKRVEVRFPDPTQNPYLGFAAMLMAGLDGIKNKIHPGKP MDKDLYDLPAKELKKIPTVCGSLREALESLDKDRKFLTAGGVFDDDQIDSFIELKMQE VMRFEMTPHPVEFDMYYSA" misc_feature 1715606..1717003 /gene="glnA" /locus_tag="AGROH133_06747" /note="glutamine synthetase; Provisional; Region: glnA; PRK09469" /db_xref="CDD:181884" misc_feature 1715642..1715887 /gene="glnA" /locus_tag="AGROH133_06747" /note="Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951" /db_xref="CDD:146534" misc_feature 1715906..1716736 /gene="glnA" /locus_tag="AGROH133_06747" /note="Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120" /db_xref="CDD:189401" gene 1717096..1718031 /locus_tag="AGROH133_06748" /db_xref="GeneID:10267490" CDS 1717096..1718031 /locus_tag="AGROH133_06748" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279020.1" /db_xref="GI:325293156" /db_xref="GeneID:10267490" /translation="MSRTMSIKPASQQTRLTDWLIFLAVPFFFSSNIIFGRGVIGEVS PFIAAFIRWIGSSLIIAPFMIADWRNCLAFVRQKTLLWLVLGILGMGVCGGVVYWGLT MTTAANGTLIYTTSSLFIILFQRIFQGRPIRRLEVAGMIIAFAGVAAIVLKGDMSALW QMKFNIGDFAILTAAIAFAVYSLLLRDPAARQMASFSLFGLIAFSGALVLLPPAAVEL AHGGLLPATAIAWAKIGGIILFASLLAFYCFTHTVRVFGPATAGITLYMMPPVSIVMA TLFLGETFETYHAIGIVLVTGGVVIATAPIGRRVA" misc_feature 1717174..1717551 /locus_tag="AGROH133_06748" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" misc_feature 1717183..1717947 /locus_tag="AGROH133_06748" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:162128" gene 1718121..1718450 /locus_tag="AGROH133_06759" /db_xref="GeneID:10267491" CDS 1718121..1718450 /locus_tag="AGROH133_06759" /note="Hemimethylated DNA-binding region; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279021.1" /db_xref="GI:325293157" /db_xref="GeneID:10267491" /translation="MKQRDAKFTLGEIVRHKVFPFRGVVIDVDPEYANTEEWWNAIPA DIRPERDQPFYHLLAENDETEYVAYVSEQNLVHDENEAPLRNRNIERMFDKAPNGEWR PKMSLAH" misc_feature 1718121..1718447 /locus_tag="AGROH133_06759" /note="Hemimethylated DNA-binding protein YccV like; Region: YccV-like; cl01548" /db_xref="CDD:194163" gene complement(1718577..1719230) /locus_tag="AGROH133_06760" /db_xref="GeneID:10267492" CDS complement(1718577..1719230) /locus_tag="AGROH133_06760" /note="Invasion associated locus B (IalB) protein; Invasion protein B, involved in pathogenesis" /codon_start=1 /transl_table=11 /product="invasion protein B" /protein_id="YP_004279022.1" /db_xref="GI:325293158" /db_xref="GeneID:10267492" /translation="MMQKANTFTRTALSALVLSLGAVSAPAISQAQDAPANQGAGAPP LGWFKTCSKQEDNDVCVVQNVVLAQNGQMITAVGLITVEGKVNRKLLQVSVPTARLIP PGVMMQIDGGKGQKLDYAVCLPDKCTAEVPLTDAMIASLKKGNEIVFTSINFRRAPNP IKIALTGFTGAYDGAAITQSQLAESQRSLQEGMQKKAEEARKKLEAAQDAAKGAPKP" misc_feature complement(1718694..1719230) /locus_tag="AGROH133_06760" /note="Invasion associated locus B (IalB) protein; Region: IalB; cl02207" /db_xref="CDD:154799" gene 1719553..1721400 /locus_tag="AGROH133_06762" /db_xref="GeneID:10267493" CDS 1719553..1721400 /locus_tag="AGROH133_06762" /note="Bacterial extracellular solute-binding protein, family 5; ABC-type oligopeptide transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="peptide ABC transporter substrate-binding protein" /protein_id="YP_004279023.1" /db_xref="GI:325293159" /db_xref="GeneID:10267493" /translation="MRKLAALIPALFLWGTALLSPEIAVAQPLHGISMHGTPELPADF RHFPYVNPDVKKGGRISYGVVGTFDSLNPFVLKGMRTTARGVWDPEFGNLLYEPLMQR SSDEPFSLYGLLAETVEWDEERTFTQFNINPKAKWSDGEPVTPDDVIFTFNLLKEKGR PPFNSRLDGVAKLEKIGEHGVRFTFNDRANRETPLILASSTPILPKHAIDPEKFEQAG LGAVVGSGPYRIKTLRPGERIIWERNPDYWGKDIPSKVGFENYDEISITYFLQVTTMF EAFKKGDIDIYPEGDAINGTSDTSHWGQAYNFPAVHRGDIVKDVFQPRLPSGMFGLVF NTRRAVFADEKVREGLSYALDFEWMNKNILGGAFKRTQSYWQNSALGAYGNAADEREL ALLGDAAKSMPPELLAGTYAMPTTDGTGADRKVLKLAVDKLKEAGYSIKNGRMSDANG RQLAFEIMTQNPAQERIALAYQRSLNLIGVAMGIRSVDDGQYQARSNSFDYDMIIRSL PSSLSPGAEQLNRWSSLSRDAQGSFNYAGAASPDIDRMIEALLQARSTEDFQAAVRGY DRLLVAGHYVIPLYYIGAQWIARWKYIDRPDMTPISGNQKQTWWDARAQ" misc_feature 1719553..1721385 /locus_tag="AGROH133_06762" /note="ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166" /db_xref="CDD:33908" misc_feature 1719679..1721340 /locus_tag="AGROH133_06762" /note="The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_14; cd08497" /db_xref="CDD:173862" gene 1721440..1722108 /locus_tag="AGROH133_06764" /db_xref="GeneID:10267494" CDS 1721440..1722108 /locus_tag="AGROH133_06764" /note="Thioredoxin-like fold; Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis" /codon_start=1 /transl_table=11 /product="polyketide biosynthesis associated protein" /protein_id="YP_004279024.1" /db_xref="GI:325293160" /db_xref="GeneID:10267494" /translation="MERIVIDVVSDMVCPWCYLGKARLDLAIAEVQDEISVDVNWRPY RLNPDYPPEGVDQKAALEEKLGKERLEQAHASLVELGKQVGIHYDFDAIKIGPNTLDA HRLSLWAHAEGRDVQERIVTALFKANFEEGRNIGDHAVLTDIAEKAGMDAKVVTRLLA SDADKDTVIAEIDAAQQMGVSGVPFFIVDQKYAISGAQTPDVLIAALRDIAKIKADEH KSMN" misc_feature 1721440..1722105 /locus_tag="AGROH133_06764" /note="Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: FrnE; COG2761" /db_xref="CDD:32627" misc_feature 1721455..1722063 /locus_tag="AGROH133_06764" /note="DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins; Region: DsbA_FrnE; cd03024" /db_xref="CDD:48573" misc_feature order(1721479..1721481,1721488..1721490) /locus_tag="AGROH133_06764" /note="catalytic residues [active]" /db_xref="CDD:48573" gene 1722160..1723092 /locus_tag="AGROH133_06765" /db_xref="GeneID:10267495" CDS 1722160..1723092 /locus_tag="AGROH133_06765" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279025.1" /db_xref="GI:325293161" /db_xref="GeneID:10267495" /translation="MSDQTLKGILLAFAAFAAYAWSDASVKLIEGQISPIESAFFGAL FGLIALPFIRKRNDRWVDVVKTTNRPLWIIRFFAAGTGAVGSVTAFTHLSMAEAFALI FLLPSFVTIMSVVFLKEQVGIRRWSAVIIGFLGVLVILRPGFRELGIGHIGAIIGGFS GALSIVIFRAMGPSEKNVSLYGAGVLGCLTISGIAMVPTFIMPGGEQWLLLAGYGLLG ALGNVLVMYAAQYAPAAMIGPTQYSQMLWAILFGYLIFGDRIDGWMLMGIALIVGSGL LTLIREKQRKVPLPASIAATDQNVAVGITPEDER" misc_feature 1722229..1723014 /locus_tag="AGROH133_06765" /note="Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:31041" gene complement(1723150..1723494) /locus_tag="AGROH133_06775" /db_xref="GeneID:10267496" CDS complement(1723150..1723494) /locus_tag="AGROH133_06775" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279026.1" /db_xref="GI:325293162" /db_xref="GeneID:10267496" /translation="MWTNINRFATAGLVALTIAGTTIATTSQAEARNNFGRGLAAGIA GTIIGGALIAGARHPGYAYGPAYYAPAYGPPVYAAPAYGPPVVYQPVYPRCHVAWRQN AWGDMYRVRVCD" gene 1723626..1723835 /locus_tag="AGROH133_06779" /db_xref="GeneID:10267497" CDS 1723626..1723835 /locus_tag="AGROH133_06779" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279027.1" /db_xref="GI:325293163" /db_xref="GeneID:10267497" /translation="MEFSSDWLMEMSRRWVVYPPLPCRASPPKVGRSICGKVLPISTL ENEVVTARLADLPHCGGDARQGRGG" gene complement(1723869..1727366) /gene="mfd" /locus_tag="AGROH133_06780" /db_xref="GeneID:10267498" CDS complement(1723869..1727366) /gene="mfd" /locus_tag="AGROH133_06780" /EC_number="3.6.1.-" /note="Transcription-repair coupling factor, CarD-like/TRCF domain; Transcription-repair coupling factor (superfamily II helicase)" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="YP_004279028.1" /db_xref="GI:325293164" /db_xref="GeneID:10267498" /translation="MIAGFDAKLVASADTPLTIGNVPSGMEALLLADMARAGTSVAYV MSDGQRVADLEQILGFVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALAGLINHA KKPHPAIVLVTVNAMLQKMAPRDVIESLGFSAKPGNQIRMEDIAARLERNGFDRVATV REVGEFAVRGGILDVFVPGTEEPVRLDFFGDTLESIRTFDPASQRTIAQARSLDLNPM SEVTLTPDTIGRFRKNYLSLFGAATRDDALYQAVSEGRRYAGMEHWLPLFYEELETAF DYLSGFRIVTDHTAREAAKERSKLVLDYYEARRASGETKGLTQGAPYKPVSPGQIYLD GKSFEAALASVNAVRLTPFNEHDSEGRPVATLDAHVGPRWARPPTEGDSEERVNVFDL AVKHIAERRAKGWKVLITGWSEGSLDRLLQVLNEHGLEKIKPVTSLKEVEKLGKGEAA SAVLSLEAGFETGTLAIIGEQDILGDRMVRRSKRRKRGADFIAEVAGLDEGSLVVHAE HGIGRFVGLQTIEAAGAPRACLELHYADDAKLFLPVENIDLLSRYGSDAAEATLDKLG GGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIAPDGLYDEFAARFPYDETED QLNAIDAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAAMNGVQVAVVVPTTLLA RQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVADGKTDIVVGTHALLGAGISF ANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITT PPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLADLADIHAFLQSDVPEL KVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVHRADMFGLA QLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQLASHDLDI RGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEEVRDSGWSPQISVGTSVMIP EDYVPDLHLRMGLYRRLGELADIGEIDGFGAEMIDRFGPLPKEVQHLLKIVYIKSLCR TANVEKVDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNRDLPTPE KRLAGAAMVMTQLAELARS" misc_feature complement(1723872..1727321) /gene="mfd" /locus_tag="AGROH133_06780" /note="Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197" /db_xref="CDD:31390" misc_feature complement(1725588..1725875) /gene="mfd" /locus_tag="AGROH133_06780" /note="CarD-like/TRCF domain; Region: CarD_TRCF; cl00588" /db_xref="CDD:193879" misc_feature complement(1725033..1725443) /gene="mfd" /locus_tag="AGROH133_06780" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature complement(1725402..1725416) /gene="mfd" /locus_tag="AGROH133_06780" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature complement(1725117..1725122) /gene="mfd" /locus_tag="AGROH133_06780" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature complement(1724565..1724918) /gene="mfd" /locus_tag="AGROH133_06780" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature complement(order(1724697..1724705,1724778..1724783, 1724847..1724858)) /gene="mfd" /locus_tag="AGROH133_06780" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(order(1724592..1724594,1724601..1724603, 1724613..1724615,1724679..1724681)) /gene="mfd" /locus_tag="AGROH133_06780" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature complement(1724004..1724291) /gene="mfd" /locus_tag="AGROH133_06780" /note="TRCF domain; Region: TRCF; pfam03461" /db_xref="CDD:190644" gene complement(1727370..1727681) /locus_tag="AGROH133_06781" /db_xref="GeneID:10267499" CDS complement(1727370..1727681) /locus_tag="AGROH133_06781" /note="Protein of unknown function DUF339; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279029.1" /db_xref="GI:325293165" /db_xref="GeneID:10267499" /translation="MTGLVRTSADLDPRRRRILYRCWHRGIREMDLVLGQFAEDNIAG LSDDQLDELEIIMAEEDNDLVKMVTGALPVPEKFQTPLFEKIASYRPDFDLVTAETLK A" misc_feature complement(1727400..1727681) /locus_tag="AGROH133_06781" /note="Flavinator of succinate dehydrogenase; Region: Sdh5; cl01110" /db_xref="CDD:186339" gene 1727860..1729974 /gene="recG" /locus_tag="AGROH133_06782" /db_xref="GeneID:10267500" CDS 1727860..1729974 /gene="recG" /locus_tag="AGROH133_06782" /EC_number="3.6.1.-" /note="catalyzes branch migration in Holliday junction intermediates; RecG-like helicase" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase" /protein_id="YP_004279030.1" /db_xref="GI:325293166" /db_xref="GeneID:10267500" /translation="MLSMRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRV IDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQPAPPGNRSAPYRVFLHDET GELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLV EAVYPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRD SADIDPQAPARRRLAYDEFLAGQLSLALVRQRLRKVAGQPIRAKGDIAAKILSQLPFS LTPSQNASVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVEAGGQAVLMAPT EILARQHFATISKLANAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQD SVSYKNLVLAVVDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVS KLTEKPAGRKPIQTVTIPTERIGDIVERLRAALKEGKKAYWICPLVEETEESDLMSAE ERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKNGGTRLLVATTVVEVGVDVPDATI MVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLI AEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRG ESLRTLLYLHRRDEAIRFLHAG" misc_feature 1727875..1729956 /gene="recG" /locus_tag="AGROH133_06782" /note="ATP-dependent DNA helicase RecG; Provisional; Region: PRK10917" /db_xref="CDD:182836" misc_feature 1728079..1728306 /gene="recG" /locus_tag="AGROH133_06782" /note="RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-...; Region: RecG_wedge_OBF; cd04488" /db_xref="CDD:72960" misc_feature order(1728079..1728081,1728235..1728237,1728241..1728243, 1728247..1728249,1728304..1728306) /gene="recG" /locus_tag="AGROH133_06782" /note="generic binding surface II; other site" /db_xref="CDD:72960" misc_feature order(1728112..1728114,1728136..1728138,1728187..1728189, 1728205..1728207,1728283..1728285) /gene="recG" /locus_tag="AGROH133_06782" /note="ssDNA binding site; other site" /db_xref="CDD:72960" misc_feature 1728757..1729161 /gene="recG" /locus_tag="AGROH133_06782" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 1728778..1728792 /gene="recG" /locus_tag="AGROH133_06782" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 1729072..1729083 /gene="recG" /locus_tag="AGROH133_06782" /note="putative Mg++ binding site [ion binding]; other site" /db_xref="CDD:28927" misc_feature 1729240..1729656 /gene="recG" /locus_tag="AGROH133_06782" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(1729339..1729350,1729435..1729440,1729513..1729521) /gene="recG" /locus_tag="AGROH133_06782" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(1729537..1729539,1729603..1729605,1729615..1729617, 1729624..1729626) /gene="recG" /locus_tag="AGROH133_06782" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene 1729987..1730259 /locus_tag="AGROH133_06783" /db_xref="GeneID:10267501" CDS 1729987..1730259 /locus_tag="AGROH133_06783" /note="5'(3')-deoxyribonucleotidase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279031.1" /db_xref="GI:325293167" /db_xref="GeneID:10267501" /translation="MNMIDPRRPPPAFRKGYALCSPQNILQPDTFAKSQKKAISKAFK KPGRKKAWTEALEQGWSVRLVYMRLFVPVFHATTTGTEVDDLDDED" gene 1730314..1730571 /locus_tag="AGROH133_06784" /db_xref="GeneID:10267502" CDS 1730314..1730571 /locus_tag="AGROH133_06784" /note="Prevent-host-death protein" /codon_start=1 /transl_table=11 /product="prevent-host-death family protein" /protein_id="YP_004279032.1" /db_xref="GI:325293168" /db_xref="GeneID:10267502" /translation="MQISVTDAKGQLTELVRRAEAGDEIILTRHGHAAVRLVPVVVVA DKKSRRAVLDKVRAAVATKSDDGPDAAHSQDFLYDEHGLPK" misc_feature 1730317..>1730409 /locus_tag="AGROH133_06784" /note="Phd_YefM; Region: PhdYeFM; cl09153" /db_xref="CDD:195806" gene 1730568..1730951 /locus_tag="AGROH133_06785" /db_xref="GeneID:10267503" CDS 1730568..1730951 /locus_tag="AGROH133_06785" /note="PilT protein, N-terminal; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="PilT domain-containing protein" /protein_id="YP_004279033.1" /db_xref="GI:325293169" /db_xref="GeneID:10267503" /translation="MMVIDTSALLAILLDEPTADACAMALDTDEPLLISAGTLAEAVI AAQRRGRSRELEMLIEGLSVEIKPVTAKSIRGISEAYRIWGKGIHPAGLNFGDCFAYE LAKAEGCPLLYVGNDFSQTDISGLL" misc_feature 1730571..1730936 /locus_tag="AGROH133_06785" /note="PIN domain of the VapC-like UPF0110 protein Mb0640 and homologs; Region: PIN_UPF0110; cd09871" /db_xref="CDD:189041" misc_feature order(1730580..1730582,1730688..1730690,1730856..1730858) /locus_tag="AGROH133_06785" /note="putative active site [active]" /db_xref="CDD:189041" gene complement(1730955..1731623) /locus_tag="AGROH133_06786" /db_xref="GeneID:10267504" CDS complement(1730955..1731623) /locus_tag="AGROH133_06786" /note="Protein of unknown function DUF502; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279034.1" /db_xref="GI:325293170" /db_xref="GeneID:10267504" /translation="MTDIPVKISFAARLRNSFLTGVLILAPVTITMWLVWSFLQWADS WVKPYIPARYDPEQYFDVAIPGFGLLIAVIGITLIGFLGNNLIGKWIVGVGESVLNRM PLVRPIYKSIKQLFESVLKEHSNSFKKVGLIEFPSPGTWAMVFVSSEVKGELAHRFNE MGQEMVAVFLPPTPVPTAGFLLFVPKDKIVMLDMTPEDAAKLLISGGLVAPDFTPPKM IAPV" misc_feature complement(1730973..1731599) /locus_tag="AGROH133_06786" /note="Protein of unknown function (DUF502); Region: DUF502; cl01107" /db_xref="CDD:194037" gene complement(1731637..1732140) /locus_tag="AGROH133_06789" /db_xref="GeneID:10267505" CDS complement(1731637..1732140) /locus_tag="AGROH133_06789" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase; Predicted acetyltransferase" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004279035.1" /db_xref="GI:325293171" /db_xref="GeneID:10267505" /translation="MIIRPERQGDEEAIARVTEDAFRNVDYSDKTEHVIIERLRKAGA LTVSLVAEDSEGIIGHIGFSPVTLSGGETGWFCLAPLSVAPDRQRQGVGSGLVREGLA ALDRLSASGAVVAGDPDYYGRFGFRHVEGLSGKAIPDEYFTVLRLHGGTPSGIVGFHP GFDSDNA" misc_feature complement(1731646..1732140) /locus_tag="AGROH133_06789" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(1732137..1733963) /gene="glmS" /locus_tag="AGROH133_06790" /db_xref="GeneID:10267506" CDS complement(1732137..1733963) /gene="glmS" /locus_tag="AGROH133_06790" /EC_number="2.6.1.16" /note="Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains" /codon_start=1 /transl_table=11 /product="glucosamine-fructose-6- phosphateaminotransferase" /protein_id="YP_004279036.1" /db_xref="GI:325293172" /db_xref="GeneID:10267506" /translation="MCGIVGIVGTQPVAERLVDALKRLEYRGYDSAGVATIDNGAMDR RRAEGKLFNLEKLVSEKPLPGVVGIAHTRWATHGVPNETNAHPHFVEGVAVVHNGIIE NFSELREELSAEGATFTTQTDTEVVAQLLAKYTREGLGHREAMLKMLNHVTGAYALVV MFQDDPNTLLSARSGPPLAVGYGRGEMFLGSDAIALSPFTNEITYLVDGDCAIVTRDG AEIIDFSGKPVKRERQISQATAFVVDKGNHRHFMEKEIYEQPEVISHALSHYVDFASK TVKDADTAIDFARLSGLAISACGTAYLSGLIGKYWFERYARLPVEIDVASEFRYREIP LVPTQAALFISQSGETADTLAALRYCQQEGLKIGAVVNTRESTMARESDAIFPILAGP EIGVASTKAFTCQLAVLASLAVAAGKARGTLKPGEEKELVQQLIEMPRIMSKVLNLIQ PQIEALSRDLSRFKDVLYLGRGTSFPLALEGALKLKEISYIHAEGYAAGELKHGPIAL IDENMPVIVIAPHDRFFEKTVSNMQEVAARGGRIIFITDEQGAAASKLDTMATITLPN VDELIAPMVFSLPIQLLAYHTAVFMGTDVDQPRNLAKSVTVE" misc_feature complement(1732140..1733963) /gene="glmS" /locus_tag="AGROH133_06790" /note="glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331" /db_xref="CDD:178980" misc_feature complement(1733322..1733960) /gene="glmS" /locus_tag="AGROH133_06790" /note="Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate...; Region: GFAT; cd00714" /db_xref="CDD:48478" misc_feature complement(order(1733592..1733597,1733667..1733672, 1733706..1733708,1733733..1733738,1733742..1733747, 1733883..1733885,1733958..1733960)) /gene="glmS" /locus_tag="AGROH133_06790" /note="glutaminase active site [active]" /db_xref="CDD:48478" misc_feature complement(1732749..1733087) /gene="glmS" /locus_tag="AGROH133_06790" /note="SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008" /db_xref="CDD:88405" misc_feature complement(order(1732908..1732910,1732974..1732976, 1732983..1732985,1732995..1732997,1733001..1733003, 1733022..1733027,1733034..1733039,1733067..1733072)) /gene="glmS" /locus_tag="AGROH133_06790" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88405" misc_feature complement(order(1732923..1732931,1733061..1733066)) /gene="glmS" /locus_tag="AGROH133_06790" /note="active site" /db_xref="CDD:88405" misc_feature complement(1732146..1732613) /gene="glmS" /locus_tag="AGROH133_06790" /note="SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009" /db_xref="CDD:88406" misc_feature complement(order(1732149..1732151,1732164..1732169, 1732362..1732367,1732371..1732373,1732383..1732388, 1732437..1732448,1732452..1732460,1732464..1732466, 1732476..1732478,1732482..1732484,1732488..1732490, 1732494..1732496,1732506..1732508,1732548..1732550)) /gene="glmS" /locus_tag="AGROH133_06790" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:88406" misc_feature complement(order(1732503..1732505,1732512..1732514)) /gene="glmS" /locus_tag="AGROH133_06790" /note="active site" /db_xref="CDD:88406" gene complement(1734168..1735529) /gene="glmU" /locus_tag="AGROH133_06791" /db_xref="GeneID:10267507" CDS complement(1734168..1735529) /gene="glmU" /locus_tag="AGROH133_06791" /EC_number="2.3.1.157" /EC_number="2.7.7.23" /note="UDP-N-acetylglucosamine pyrophosphorylase; N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I- patch acetyltransferase domains)" /codon_start=1 /transl_table=11 /product="glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase" /protein_id="YP_004279037.1" /db_xref="GI:325293173" /db_xref="GeneID:10267507" /translation="MERSSLAVILAAGDSTRMKSSKSKVLHPVAGRPMIGHVVEAVAG AGVGAVALVVGRDADNVAAAASLKGLQVEAFLQKERKGTGHAVLAAREAIERDFDDVI VAYGDVPLITSATLDRAREAIADGADVAVIGFHTDRPTGYGRLLVENGELVAIREEKD ATDEERKVTWCNSGLMAINGRNALDLLDRIGNSNVKGEYYLTDIVEIARSLGRRAIAI DAPEKELTGCNNRAELAFIERLWQERRRHELMVDGVSMIAPETVFLSFDTKIGQDVLI EPNVVFGPGVTIEPGAIIHAFSHLEGAYLAEGAVVGPFARLRPGANLHANAKVGNFCE VKKAEIGEGAKVNHLTYIGDAFVGAGSNIGAGAITCNYDGYNKSETRIGANSFIGSNS SLVAPVSIGERAYIASGSVITDDVPADALAFGRARQEVKPGRAVALRERAKALKEAKK KSS" misc_feature complement(1734225..1735529) /gene="glmU" /locus_tag="AGROH133_06791" /note="bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional; Region: glmU; PRK14353" /db_xref="CDD:184642" misc_feature complement(1734828..1735511) /gene="glmU" /locus_tag="AGROH133_06791" /note="N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540" /db_xref="CDD:133020" misc_feature complement(order(1735209..1735211,1735215..1735217, 1735272..1735274,1735281..1735283,1735371..1735373, 1735494..1735502)) /gene="glmU" /locus_tag="AGROH133_06791" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133020" misc_feature complement(order(1734843..1734845,1735209..1735211)) /gene="glmU" /locus_tag="AGROH133_06791" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133020" misc_feature complement(1734246..1734818) /gene="glmU" /locus_tag="AGROH133_06791" /note="N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353" /db_xref="CDD:100044" misc_feature complement(order(1734255..1734257,1734306..1734311, 1734360..1734365,1734369..1734371,1734399..1734401, 1734414..1734422,1734435..1734446,1734477..1734479, 1734486..1734488,1734522..1734524,1734528..1734530, 1734576..1734578)) /gene="glmU" /locus_tag="AGROH133_06791" /note="active site" /db_xref="CDD:100044" misc_feature complement(order(1734399..1734401,1734417..1734419, 1734438..1734446,1734477..1734479,1734486..1734488, 1734522..1734524,1734528..1734530,1734576..1734578)) /gene="glmU" /locus_tag="AGROH133_06791" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100044" misc_feature complement(order(1734255..1734257,1734306..1734311, 1734360..1734365,1734414..1734416,1734420..1734422, 1734435..1734437)) /gene="glmU" /locus_tag="AGROH133_06791" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100044" gene complement(1735736..1736668) /locus_tag="AGROH133_06792" /db_xref="GeneID:10267508" CDS complement(1735736..1736668) /locus_tag="AGROH133_06792" /note="GntR, C-terminal; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004279038.1" /db_xref="GI:325293174" /db_xref="GeneID:10267508" /translation="MQFMRGLCYFDVFYCSNEVWLCFSRALVFFTVFCVENRAAFLDY TSQARFLHLQPNGRTWNLQRGMLDAAIGFRKLRTNHAQVVHKLGLDIVSGVFKTGDIL PGDAELMERLKVSRTVLREAMKTLTAKGMISPKARIGTRVTERESWNMFDSEVLLWHF EAGVSEEFLLHLYDIRQAFEPYGAGLAAARAKDADIARLVAYANEMGNTAYSKEKRAL ADMNFHVLITEMSGNPFMRTVGSLIKAALAGIFRMSNPEADPNEISDVSASHLRLVEA FRLRDEGAARREMERLIENGRQQILEFTARNSRP" misc_feature complement(1735739..1736431) /locus_tag="AGROH133_06792" /note="Transcriptional regulators [Transcription]; Region: FadR; COG2186" /db_xref="CDD:32369" misc_feature complement(1736240..1736431) /locus_tag="AGROH133_06792" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature complement(order(1736249..1736260,1736264..1736269, 1736297..1736299,1736306..1736311,1736315..1736329, 1736351..1736356,1736360..1736362,1736429..1736431)) /locus_tag="AGROH133_06792" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature complement(1735784..1736155) /locus_tag="AGROH133_06792" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene complement(1736706..1737779) /locus_tag="AGROH133_06793" /db_xref="GeneID:10267509" CDS complement(1736706..1737779) /locus_tag="AGROH133_06793" /note="Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein" /codon_start=1 /transl_table=11 /product="basic membrane lipoprotein" /protein_id="YP_004279039.1" /db_xref="GI:325293175" /db_xref="GeneID:10267509" /translation="MKKLVIALAASIAALGGVVSSAEAADAKKVCFIYVGSRTDGGWT QAHEIGREELQKHFGDKIETPFLESVPEGPDAERAIERMARSGCELVFTTSFGFMDAT VKVAQKFPKVKFEHATGFKTAENVATYNSRFYEGRYIQGQIAAKMSKKGVAGYIASFP IPEVVMGIDAFVLGAQSVNPEFKVKVVWANTWFDPGKEADAAKALIDQGVDILTQHTD TTAPMQVAAERGIKAFGQASDMIKAGPETQLTAIKDTWGAYYIKRTQALLDGTWKSES IWDGLKDGILTMAPYTNMPDDVKKMAEETEAKIKSGELHPFTGPVKKQDGSEWLKAGE KAEDGVLLGLNFYVAGVDDKLPQ" misc_feature complement(1736916..1737695) /locus_tag="AGROH133_06793" /note="Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea; Region: PBP1_BmpA_Med_like; cd06353" /db_xref="CDD:107348" misc_feature complement(order(1737018..1737020,1737069..1737071, 1737204..1737206,1737288..1737290,1737426..1737428, 1737648..1737650,1737672..1737677)) /locus_tag="AGROH133_06793" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107348" gene complement(1737817..1738740) /locus_tag="AGROH133_06795" /db_xref="GeneID:10267510" CDS complement(1737817..1738740) /locus_tag="AGROH133_06795" /note="Branched-chain amino acid transport system / permease component; Uncharacterized ABC-type transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004279040.1" /db_xref="GI:325293176" /db_xref="GeneID:10267510" /translation="MMDMLQAILLTVITAATPLVLAASGELVAERSGVLNLGVEGMMI MGAVCAFAAAHMTGSPYLGILAGIASGAVFSLLFGFLTLTLVTNQVATGLALTILGLG VSGMLGESFVGLPGVKLQPIVFPVLSEIPFIGPLLFRQDLIFYMSIALVAGISWFLFK SRTGLKIRAIGDNHGSAHALGINVIRTRYLAVMFGGACAGLAGAQLSLVYTPQWVENM SAGRGWIALALVVFASWRPWRVLAGGYLFGAVTIGQLHAQAFGIGVPSQLLSALPYIA TIVVLVIISHNRRTTLINTPASLGKSFVPDR" misc_feature complement(1737898..1738695) /locus_tag="AGROH133_06795" /note="Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (; Region: TM_PBP1_transp_TpRbsC_like; cd06580" /db_xref="CDD:119322" misc_feature complement(1738162..1738218) /locus_tag="AGROH133_06795" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119322" gene complement(1738737..1739828) /locus_tag="AGROH133_06806" /db_xref="GeneID:10267511" CDS complement(1738737..1739828) /locus_tag="AGROH133_06806" /note="Branched-chain amino acid transport system / permease component; ABC-type uncharacterized transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004279041.1" /db_xref="GI:325293177" /db_xref="GeneID:10267511" /translation="MRIELEKRAGISKLFTLLSPLLALVLTLLVGAIMFAILGKNPLD ALYAFFIEPLLEVWSLHELAIKAAPLILIAVGLSICYRSNNWNIGAEGQFTIGAITGS ILPVLYPDWHSPLILPLMLVMGAIGGALYAGIPALLKTKFNTNEILVSLMLVYVAQLF LDWLTRGIWRDPGGYNFPQTKPFNESAVLPEMLASGRAHWGFVFAIVAAIALWFMMRY MLKGFEVTVLGQSARAGRFAGFSSSRMVWFSMLLSGALAGLAGISEASGSIGHLQPSI SPGYGFTAIIVAFLGRLNPLGIILSGLVLALTYLGGEAAQLSIGVSDKVTRVFQGLML FFVLSCDTLIFYRIRVVFTGKAHNSQGAA" misc_feature complement(1738815..1739606) /locus_tag="AGROH133_06806" /note="Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (; Region: TM_PBP1_transp_TpRbsC_like; cd06580" /db_xref="CDD:119322" misc_feature complement(1739076..1739132) /locus_tag="AGROH133_06806" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119322" gene complement(1739818..1741374) /locus_tag="AGROH133_06818" /db_xref="GeneID:10267512" CDS complement(1739818..1741374) /locus_tag="AGROH133_06818" /EC_number="3.6.3.17" /note="ABC transporter related; ABC-type uncharacterized transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_004279042.1" /db_xref="GI:325293178" /db_xref="GeneID:10267512" /translation="MAPEAVPLLSVRKLTKLFGNFAACNGIDLDIAPGEIHALLGENG AGKSTLVKMLFGVLSPSEGDIVWQGQPVSIGSPSEARRLGIGMVFQHFSLFEALTVAE NIALSLDPKISLKEIAKEAEQLSRAYGLPLDPNAHVADLSVGERQRIEIVRALLQNPR LIILDEPTSVLTPQEADKLFETLAKLKAEGRSVLYISHRLEEVQRICDRATVLRHGKV TGACDPRKETPASLARMMVGSDVASVSRPTGDALGQPQIEVMGLSVAPRTPFAVALKA VSMTVRAGEVLAIAGVAGNGQGELFDALSGEYPVYNNDAIHLRGKPVGRIGINGRRLM GAGFVPEERHGHAAVPGMSLSDNLLLARARSDRKAFLTGGFLRIVRGSAIKAAARRIS ETMDVRKSGADPLAGSLSGGNLQKFIVGRELDRQPAVLVVNQPTWGVDAGAASRIRQA LVDLAKAGSAVIVISQDLDEIFEVATNIAVISDGQLSQAYPVEDMTLEKIGLLMGGVH TQLGAAQHAH" misc_feature complement(1739857..1741356) /locus_tag="AGROH133_06818" /note="ABC-type uncharacterized transport systems, ATPase components [General function prediction only]; Region: COG3845" /db_xref="CDD:33636" misc_feature complement(1740715..1741350) /locus_tag="AGROH133_06818" /note="This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and...; Region: ABC_Carb_Monos_I; cd03216" /db_xref="CDD:72975" misc_feature complement(1741231..1741254) /locus_tag="AGROH133_06818" /note="Walker A/P-loop; other site" /db_xref="CDD:72975" misc_feature complement(order(1740781..1740783,1740877..1740882, 1741105..1741107,1741228..1741236,1741240..1741245)) /locus_tag="AGROH133_06818" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72975" misc_feature complement(1741105..1741116) /locus_tag="AGROH133_06818" /note="Q-loop/lid; other site" /db_xref="CDD:72975" misc_feature complement(1740925..1740954) /locus_tag="AGROH133_06818" /note="ABC transporter signature motif; other site" /db_xref="CDD:72975" misc_feature complement(1740877..1740894) /locus_tag="AGROH133_06818" /note="Walker B; other site" /db_xref="CDD:72975" misc_feature complement(1740859..1740870) /locus_tag="AGROH133_06818" /note="D-loop; other site" /db_xref="CDD:72975" misc_feature complement(1740775..1740795) /locus_tag="AGROH133_06818" /note="H-loop/switch region; other site" /db_xref="CDD:72975" misc_feature complement(1739917..1740618) /locus_tag="AGROH133_06818" /note="This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (; Region: ABC_Carb_Monos_II; cd03215" /db_xref="CDD:72974" gene complement(1741587..1742339) /gene="pcs" /locus_tag="AGROH133_06819" /db_xref="GeneID:10267513" CDS complement(1741587..1742339) /gene="pcs" /locus_tag="AGROH133_06819" /EC_number="2.7.8.24" /note="CDP-alcohol phosphatidyltransferase; Phosphatidylserine synthase" /codon_start=1 /transl_table=11 /product="phosphatidylcholine synthase" /protein_id="YP_004279043.1" /db_xref="GI:325293179" /db_xref="GeneID:10267513" /translation="MKSGAQTLTMKIFNYKRVPYAEIRAFSVHILTASGSFLAFLGVV AASEHRFVDMFWWLGLALLVDGIDGPIARKVRVKEVLPNWSGDTLDNIIDYVTYVLLP AFALYQSGMIGEPLSFVAAGMIVVSSAIYYADMGMKTDEYFFSGFPVVWNMVVFTLFV MDASATTAMTVVTISVFLTFLPINFLHPVRVKRLRPLNLAIVFVWCALGGYALLMHFE MPSWAVIGFVASGLYLYCIGGILQFFPALGAK" misc_feature complement(1741596..1742291) /gene="pcs" /locus_tag="AGROH133_06819" /note="Phosphatidylserine synthase [Lipid metabolism]; Region: PssA; COG1183" /db_xref="CDD:31376" misc_feature complement(1741977..1742270) /gene="pcs" /locus_tag="AGROH133_06819" /note="CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453" /db_xref="CDD:193825" gene 1742522..1743730 /gene="ubiH" /locus_tag="AGROH133_06826" /db_xref="GeneID:10267514" CDS 1742522..1743730 /gene="ubiH" /locus_tag="AGROH133_06826" /EC_number="1.14.13.-" /note="Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, FAD binding domain; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases" /codon_start=1 /transl_table=11 /product="2-octaprenyl-6-methoxyphenol hydroxylase" /protein_id="YP_004279044.1" /db_xref="GI:325293180" /db_xref="GeneID:10267514" /translation="MRHFDIAITGAGLAGQIAAIALARAGRHVALVAPPSEKKDRRTT ALMDQSIRFMDRLGLWSRIAPAAARLSTMQIIDGTDRLLRAPTVQFRSSEIGLDAFGW NIPNEALLGVLSEAVEQEHNITRFETTAETIDIGNDRVSVTLGDGEALSADFLIGADG RKSMVRDAAAIGVKSWSYPQTAIVLNFSHSRPHGNVSTEFHTPTGPFTQVPLPGDRSS LVWVVTPAQAEELTALPLEALSLKVEERMQSMLGAVTVEDSVQAWPLSSMTAHRFGKG RVALIGEAAHGFPPIGAQGLNLSLRDIIALTDLLGAVSDRPIAADAGSSFDRKRRADV YTRTLSVDLLNRSLLSDLLPVQMARAAGLHVLSGIGTLRSMVMREGIEPGRGLKALPS LLFGSFKKAG" misc_feature 1742603..1743673 /gene="ubiH" /locus_tag="AGROH133_06826" /note="2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional; Region: PRK07494" /db_xref="CDD:181001" misc_feature 1742606..1743664 /gene="ubiH" /locus_tag="AGROH133_06826" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene complement(1743714..1744652) /locus_tag="AGROH133_06827" /db_xref="GeneID:10267515" CDS complement(1743714..1744652) /locus_tag="AGROH133_06827" /note="Membrane transport protein; Predicted permeases" /codon_start=1 /transl_table=11 /product="malonate transporter" /protein_id="YP_004279045.1" /db_xref="GI:325293181" /db_xref="GeneID:10267515" /translation="MADIVGLLLPFFGLIFIGYGTARITKQPVEAMGWLNTFIIYAAL PALFFKLVSKTPVEELTRMDFVAASLACTYGIFLAVFLIGRFVRKNNLAETTIQSFAA SYGNIGYMGPGLALLALGEKAAVPVALIVCLENAAHFIVAPAMMAVAGGDKRSAARLA LDVARKVITHPFIVSVIAGFLAASLSWQPPEAVQRLVDYLAQSAAPCALFAMGVTLAL RPMKRVPVEISYIVPAKLILHPLAAYLVLSSLGRFEPVWIYSAVLLAGLPTATNVFVI GQQYHVWQERASATILISTVLSVFTLTGVVYFIQPF" misc_feature complement(1743720..1744598) /locus_tag="AGROH133_06827" /note="Membrane transport protein; Region: Mem_trans; cl09117" /db_xref="CDD:189190" gene complement(1744688..1745449) /gene="ccdA" /locus_tag="AGROH133_06838" /db_xref="GeneID:10267516" CDS complement(1744688..1745449) /gene="ccdA" /locus_tag="AGROH133_06838" /note="Cytochrome c biogenesis protein, transmembrane region; Cytochrome c biogenesis protein" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein" /protein_id="YP_004279046.1" /db_xref="GI:325293182" /db_xref="GeneID:10267516" /translation="MRSSFLSIADISLFSALLAGALSFLSPCVLPLVPPYLCYMAGVS VEQFRTENTAPRPEIRRAVLFSAFFFTLGFATVFVALGAGASTIGTLLRQNLDILAKI GGFIIILMGLNFLGVFRIGLFSREARFQGAGKPATLSGAYVMGLAFAFGWTPCIGPVL GAILGVAASRDTVGDGAMLLAVYSLGLAVPFWIAAAFSGSFMRFLVRFRRHLGLVEKL MGVLLVLTGLAFMTGFITNVAIWFQETFPILMKIG" misc_feature complement(1744754..1745284) /gene="ccdA" /locus_tag="AGROH133_06838" /note="Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl00515" /db_xref="CDD:153822" gene 1745776..1745851 /locus_tag="AGROH133_06845" /db_xref="GeneID:10267517" tRNA 1745776..1745851 /locus_tag="AGROH133_06845" /product="tRNA-Lys" /anticodon=(pos:1745809..1745811,aa:Lys) /db_xref="GeneID:10267517" gene 1746162..1746743 /locus_tag="AGROH133_06846" /db_xref="GeneID:10267518" CDS 1746162..1746743 /locus_tag="AGROH133_06846" /note="Protein of unknown function DUF1003; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279047.1" /db_xref="GI:325293183" /db_xref="GeneID:10267518" /translation="MATHIEDDSDMLIPQDLAEGASRYLGKPLELLPDREKAIFHRLA ARRTISTDANAVFDERLTPGQRLADAVAKFGGSWTFILIFAALLAIWLSANIIAASNA FDPYPFIFLNLILSMLAAVQAPVIMMSQNRHAAKDRIDAAHDYEVNLKAEIEIMALHD KFDRMRSIELKALVDKQQQQIDLLTKLVLKQPG" misc_feature 1746384..1746704 /locus_tag="AGROH133_06846" /note="Protein of unknown function (DUF1003); Region: DUF1003; cl01831" /db_xref="CDD:154613" gene 1747328..1747780 /locus_tag="AGROH133_06850" /db_xref="GeneID:10267519" CDS 1747328..1747780 /locus_tag="AGROH133_06850" /note="FMN-binding split barrel, related; Predicted flavin-nucleotide-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279048.1" /db_xref="GI:325293184" /db_xref="GeneID:10267519" /translation="MTSAECIAFLSRMSFGHLACIDHDRPYVVPIHFVFHEGGVYSFS MMGAKIENMRLNPHVCLQVDEVKNTSTWTSVILHGLYQELEDNEQWQSERIYAWSLIQ KHPNWWEPGGSTIHPHENGTDSTKPVFFSIQKESLTGRKAVQREDFVR" misc_feature 1747328..1747753 /locus_tag="AGROH133_06850" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" gene complement(1747792..1748535) /locus_tag="AGROH133_06851" /db_xref="GeneID:10267520" CDS complement(1747792..1748535) /locus_tag="AGROH133_06851" /note="glycosyl transferase, family 25; glycosyltransferase involved in LPS biosynthesis" /codon_start=1 /transl_table=11 /product="glycosyl transferase, family 25" /protein_id="YP_004279049.1" /db_xref="GI:325293185" /db_xref="GeneID:10267520" /translation="MLPISAFPVYIISIARARARLEKMLNGASGLRLDLRPVEGVDGK TIPAAEWTDFNRRGFELRNGRHALPGEYGCYASHIKALEIFLATDAPVAVIVEDDVTF TPDFSDRVKAMVAIMPENSIVKLTNHRHRGFRARKTSALGDKLGRCIYGPQGSSACYI ISRGGAEEFLKAARVMTLPFDRALECGWGYGTHVYVTEKDFLPFGDPDTLVGTRAEYR GSKFARLNRVPAYLSSFYDNIARYVYAYL" misc_feature complement(1747984..1748514) /locus_tag="AGROH133_06851" /note="Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of...; Region: Glyco_transf_25; cd06532" /db_xref="CDD:133474" gene complement(1748679..1749935) /locus_tag="AGROH133_06852" /db_xref="GeneID:10267521" CDS complement(1748679..1749935) /locus_tag="AGROH133_06852" /note="Hedgehog/DD-peptidase, zinc-binding motif, Peptidase M15; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279050.1" /db_xref="GI:325293186" /db_xref="GeneID:10267521" /translation="MKAVDSAKGRVACQRLVVAVSLLGLSGCVSAVTDDDMAANSKKP AISAEQKAQAASAVHNPAAKQQQGHYVDPAVASATGGAVAAQPQAPGGPGQGYGAAAD IGGLTTQPTAISAGTSSIYSSRPAVAAGATAAAGAPSQGIAPAVSSVYSAPVQATQPQ PVSATGQVPTAVPVPAEQHSENRQAVPVPAPQNASEQLAAASAQSSGAGKRAGEGQES EGTVVPLAAFFAGAAKKRLPKMIENGTAENTQVAALSGGSDRTMGIALSGRSMMSDEF DDAHLEDEDDQPAGLMKLASLSGLTRVSPNGLFLQTDHVEVGCFKPELVRMIKDVERH YNSPAIVTSGYRPPKGIRQGSKHYTCDAADIQIKGVSKWELASYLRSMPQRGGVGTYC HTESVHMDTGEARDWNWRCRRTAPRK" misc_feature complement(1748706..1749254) /locus_tag="AGROH133_06852" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3108" /db_xref="CDD:32922" misc_feature complement(1748736..1749026) /locus_tag="AGROH133_06852" /note="Peptidase M15; Region: Peptidase_M15_3; cl01194" /db_xref="CDD:120464" gene complement(1750093..1750533) /gene="gloA" /locus_tag="AGROH133_06853" /db_xref="GeneID:10267522" CDS complement(1750093..1750533) /gene="gloA" /locus_tag="AGROH133_06853" /EC_number="4.4.1.5" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="lactoylglutathione lyase" /protein_id="YP_004279051.1" /db_xref="GI:325293187" /db_xref="GeneID:10267522" /translation="MRYLHTMVRVKDLGESMKFYCDLMGLEEIRRIENEKGRFTLVFL AARDDISAAREKKAPSLELTYNWDTEDYTGGRNFGHLAYEVDNIYDFCAHLQQNGVVI NRPPRDGHMAFVRSPDGISFEILQKGESLAPAEPWISMQNTGSW" misc_feature complement(1750159..1750527) /gene="gloA" /locus_tag="AGROH133_06853" /note="Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione; Region: Glyoxalase_I; cd07233" /db_xref="CDD:176659" misc_feature complement(order(1750165..1750167,1750174..1750176, 1750252..1750254,1750276..1750305,1750333..1750338, 1750348..1750353,1750375..1750377,1750396..1750398, 1750408..1750410,1750438..1750443,1750450..1750452, 1750459..1750461,1750468..1750473,1750480..1750485, 1750492..1750497,1750507..1750509,1750513..1750527)) /gene="gloA" /locus_tag="AGROH133_06853" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176659" misc_feature complement(order(1750165..1750167,1750171..1750173, 1750195..1750197,1750201..1750203,1750222..1750224, 1750294..1750296,1750336..1750338,1750342..1750344, 1750348..1750350,1750411..1750413,1750417..1750419, 1750432..1750434,1750507..1750509,1750519..1750521)) /gene="gloA" /locus_tag="AGROH133_06853" /note="active site" /db_xref="CDD:176659" misc_feature complement(order(1750165..1750167,1750294..1750296, 1750348..1750350,1750519..1750521)) /gene="gloA" /locus_tag="AGROH133_06853" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176659" misc_feature complement(order(1750171..1750173,1750195..1750197, 1750201..1750203,1750222..1750224,1750336..1750338, 1750342..1750344,1750411..1750413,1750417..1750419, 1750432..1750434,1750507..1750509)) /gene="gloA" /locus_tag="AGROH133_06853" /note="glutathione binding site [chemical binding]; other site" /db_xref="CDD:176659" gene 1750724..1751302 /gene="cspA" /locus_tag="AGROH133_06854" /db_xref="GeneID:10267523" CDS 1750724..1751302 /gene="cspA" /locus_tag="AGROH133_06854" /note="Cold-shock protein, DNA-binding; Cold shock proteins" /codon_start=1 /transl_table=11 /product="cold shock protein" /protein_id="YP_004279052.1" /db_xref="GI:325293188" /db_xref="GeneID:10267523" /translation="MADRMSSKTIVDVEDLSADAVDLTEITGAVKWFDVAKGFGFIVP DNGMQDVLLHVSCLRRDGYQTILEGTRIVALIQRRDRGFQAFRILSMDQSTAVHPSQL PPVRTHVQVTPSSGLERAIVKWFNRTKGFGFLTRGEGTEDIFVHMETLRRFGLTELRP GQVVLVRFGDGDKGLMAAEIHPDNPAPIGMSH" misc_feature 1750799..1750987 /gene="cspA" /locus_tag="AGROH133_06854" /note="Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein...; Region: CSP_CDS; cd04458" /db_xref="CDD:88424" misc_feature order(1750817..1750819,1750844..1750846,1750877..1750879, 1750964..1750966) /gene="cspA" /locus_tag="AGROH133_06854" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:88424" misc_feature order(1750835..1750855,1750874..1750885) /gene="cspA" /locus_tag="AGROH133_06854" /note="RNA-binding motif; other site" /db_xref="CDD:88424" misc_feature 1751075..1751269 /gene="cspA" /locus_tag="AGROH133_06854" /note="Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein...; Region: CSP_CDS; cd04458" /db_xref="CDD:88424" misc_feature order(1751093..1751095,1751120..1751122,1751153..1751155, 1751240..1751242) /gene="cspA" /locus_tag="AGROH133_06854" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:88424" misc_feature order(1751111..1751131,1751150..1751161) /gene="cspA" /locus_tag="AGROH133_06854" /note="RNA-binding motif; other site" /db_xref="CDD:88424" gene 1751302..1751787 /locus_tag="AGROH133_06855" /db_xref="GeneID:10267524" CDS 1751302..1751787 /locus_tag="AGROH133_06855" /note="Protein of unknown function DUF192; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279053.1" /db_xref="GI:325293189" /db_xref="GeneID:10267524" /translation="MSAVFRNLMKSAVLALLFFTLSSAAQAQQQQTFQSEPLTIETAS GETHEFVAELALDNAQREQGLMFRKSMPLGSGMLFDFGKERDVAMWMRNTLIPLDMLF IARDGRITHIHENAVPHSEAIISSRGSVKFVLELNGGTAKRYGIKPGDLVRSAQIGNR K" misc_feature 1751449..1751760 /locus_tag="AGROH133_06855" /note="Uncharacterized ACR, COG1430; Region: DUF192; cl00627" /db_xref="CDD:193890" gene complement(1751847..1752095) /locus_tag="AGROH133_06857" /db_xref="GeneID:10267525" CDS complement(1751847..1752095) /locus_tag="AGROH133_06857" /note="Transport-associated" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279054.1" /db_xref="GI:325293190" /db_xref="GeneID:10267525" /translation="MFNLSGIQESFFGDRMAGVCEAITSALAFENGLEKSRISATVEN DVIYLEGTADSVEAIDIAINLAASISNCRILSHIEPVY" misc_feature complement(<1751886..1752035) /locus_tag="AGROH133_06857" /note="BON domain; Region: BON; cl02771" /db_xref="CDD:155094" gene 1752307..1752576 /locus_tag="AGROH133_06858" /db_xref="GeneID:10267526" CDS 1752307..1752576 /locus_tag="AGROH133_06858" /note="Protein of unknown function DUF982" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279055.1" /db_xref="GI:325293191" /db_xref="GeneID:10267526" /translation="MLINKTEPCHHASWMKPVAIHLPLSAAVEIYSPLVALDMLMYRW PDEHGPEYEDARRNCLDAIAGKCDIEKARESFLVASSHAHILNIH" misc_feature 1752352..1752573 /locus_tag="AGROH133_06858" /note="Protein of unknown function (DUF982); Region: DUF982; pfam06169" /db_xref="CDD:191465" gene 1753159..1754301 /gene="ugcG" /locus_tag="AGROH133_06859" /db_xref="GeneID:10267527" CDS 1753159..1754301 /gene="ugcG" /locus_tag="AGROH133_06859" /EC_number="2.4.1.80" /note="glycosyltransferases, probably involved in cell wall biogenesis" /codon_start=1 /transl_table=11 /product="UDP-glucose:ceramide glycosyltransferase" /protein_id="YP_004279056.1" /db_xref="GI:325293192" /db_xref="GeneID:10267527" /translation="METVFALCAILLLAFNLLGVVLAGWRLKRRDTDNALVRQKPPVS LVVPLRGIETFTPLTLSRAFQLNWPDYELLFCVADEFDPVIEEVRKASAAFPAVSAQL LIGDDRISANPKLNNCVKGWRAARHEWVILADSNVLMPQSYIETMMSAWRPDSGLVCS PPLGSRPDGFWAHVECAFLNGSQGRWQYAAEAIGMGFAQGKSMLWNKPFLEERGGIRA LAAEIAEDAASTKLVRNAGRKVHLVSAPFEQPLGQRHAGEIWSRQTRWARLRRVTFPQ YFAPEILTGALPPLLFALAAAVAADANLAVTAIAVLSIMYGPELALAALNRWPVSLYT LPAMVARDVIMPFVWVRSWIGSAVAWRGNVMTIGTAESTLAGPSAD" misc_feature 1753279..1753968 /gene="ugcG" /locus_tag="AGROH133_06859" /note="Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis; Region: Glucosylceramide_synthase; cd02520" /db_xref="CDD:133012" misc_feature order(1753300..1753302,1753306..1753308,1753564..1753566) /gene="ugcG" /locus_tag="AGROH133_06859" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:133012" gene complement(1754492..1755064) /locus_tag="AGROH133_06863" /db_xref="GeneID:10267528" CDS complement(1754492..1755064) /locus_tag="AGROH133_06863" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279057.1" /db_xref="GI:325293193" /db_xref="GeneID:10267528" /translation="MFKQWKTLYRWLRRYFHAYGGVTGVLGSPIFGVAVIVSALSYSI WLSPTWVDKVDSLIPSLLGFSLGTYAILFSLVSARLKGALRALKTGSGVTYLESINAT FFHFIMVQVVTLVWATLFKGSWFFDALNFFGRDTDWVSSVKWWAYRGGAFGGFVLLTY SILLTIAAALAVYRLAMIKDPKEDDAAEKK" gene complement(1755071..1755799) /locus_tag="AGROH133_06868" /db_xref="GeneID:10267529" CDS complement(1755071..1755799) /locus_tag="AGROH133_06868" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279058.1" /db_xref="GI:325293194" /db_xref="GeneID:10267529" /translation="MISSLDRRQEMDGIVTGLITTFVKFDKDAEWFNSAELKEATEDE LSEIEIPPDLHYNPAYFYFTLIEKTHKLYFQTYSKGDTLTPLSAKKFFGHLAKNLEVM NEFGEAQISLVQEKASLDRMFKIDRITEISITIAKPNTDIFDDDFEKNIEGHLAETHS RAVTISYRADAGGSIKPDDDILKISNVALSNGSVEVKGRDEKGAVKLNSEDYPLDLHD KYDPDEKQERSAFLALLPIFGARS" misc_feature complement(<1755077..>1755226) /locus_tag="AGROH133_06868" /note="M28, and M42; Region: Zinc_peptidase_like; cl14876" /db_xref="CDD:196837" gene complement(1756105..1756590) /locus_tag="AGROH133_06869" /db_xref="GeneID:10267530" CDS complement(1756105..1756590) /locus_tag="AGROH133_06869" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279059.1" /db_xref="GI:325293195" /db_xref="GeneID:10267530" /translation="MQTFFAISSAALGFFAALILLFDWLDLLTKFQLKRNVADRDAAL KIIAKAENQFRKRFEGKEIRGNFTLIGALYGLFAAQRLNASLFDKMHQAFRRSLDLPE FSLQETEGLLDRGRVIKSFYDTHNAILRRRDEHEQRDLRIVALWLMIATLMTAILSTL F" gene complement(1756695..1757237) /locus_tag="AGROH133_06872" /db_xref="GeneID:10267531" CDS complement(1756695..1757237) /locus_tag="AGROH133_06872" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279060.1" /db_xref="GI:325293196" /db_xref="GeneID:10267531" /translation="MITENITITTPTATLSEKELFAQFLQMHIQHWTNFGALSKDYRP EDLLNASDDWCGPIGALTEAFADSLEGDDDPTERFEEMISHLEDYVGNLRLIIADFKS LKDVKLIMPDRPDEEDKDAYEAWENAAYAAEDNPRYHPATLEPSDDVAFLEDGSEPTP LSKPEFVEMTPDDEAIIREA" gene complement(1757334..1757717) /locus_tag="AGROH133_06873" /db_xref="GeneID:10267532" CDS complement(1757334..1757717) /locus_tag="AGROH133_06873" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279061.1" /db_xref="GI:325293197" /db_xref="GeneID:10267532" /translation="MLDPLQSAPTRSFADFYRERQSTILFPESLEWVGVETMGDLANE PPKLEKADLWKEQGIEVNSLAVAAARMEVFIDAAKELAELINAYKLEEIDRQMQNASP VKKGQLEALKKRLAKKTSHFFPVIE" gene complement(1758006..1758851) /locus_tag="AGROH133_06874" /db_xref="GeneID:10267533" CDS complement(1758006..1758851) /locus_tag="AGROH133_06874" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279062.1" /db_xref="GI:325293198" /db_xref="GeneID:10267533" /translation="MSNTPRYSGQSPLLRRLVNDVPADGQACKIGSNRPDKNRSKSVV KHDVNGGVPDTCAVAQQHTPTSTPYTPAITTPTTPLKSTSTNTPVTFKTTPKKTSKPH RSKALQASVARMGDIGSKPWRTLWQHEKLARSFEAAGRQNGQTFTLNLDPAREKLLLS RRDPADDLRRRISRELKSTLGYLPAYGFTFEVSPSGKLHVHGVLILKSSSDAGMKLVR EALARAGGRMMGKAAPRQVAFAKIEDGFGWAAYCQKAFDTACNWLGTNKVSYLSTDLL RLAKG" gene complement(1758896..1759327) /locus_tag="AGROH133_06875" /db_xref="GeneID:10267534" CDS complement(1758896..1759327) /locus_tag="AGROH133_06875" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279063.1" /db_xref="GI:325293199" /db_xref="GeneID:10267534" /translation="MATAAIRLPEERAEQARQLAAHKGVTVADLVGGLITDEIKRLGL GHQIGLGDIDIANLEDGTIHLDYGAGVHIWTPEQTLDIAQAIENALARKGSKLDVDAE IEVARVGVSVRLKNLNTGHERTFASSVARELVALLRHYAQN" gene complement(1759551..1762265) /locus_tag="AGROH133_06876" /db_xref="GeneID:10267535" CDS complement(1759551..1762265) /locus_tag="AGROH133_06876" /note="Hedgehog/DD-peptidase, zinc-binding motif, D-alanyl-D-alanine carboxypeptidase; Phage-related minor tail protein" /codon_start=1 /transl_table=11 /product="Minor tail protein" /protein_id="YP_004279064.1" /db_xref="GI:325293200" /db_xref="GeneID:10267535" /translation="MADEGQQLLITLAARFDKYERDLTRQQQRSRTGFKQMQTDAEKA GSGIERAMGNAMKTVGAFGKGLAGGLIGGLAIGGLDTMIGRVADITKGIASIGSEAKR AGLSNRAFQELAYVAEQARIPVDALTDGMKELSLRADEFIYTGKGSAAEAFQRLGFSA SDLKEKLKDPSALLVEIIGRLQQLDRAAQIRIADELFGGTGGERFVELLSRGADGIRE TIAEAHKLGAVMSDEMIARADELDRKFNKIGTTVSTFTKQAVVGLVGAMDDFLDRWNI IEEQSNRNVQRGLTAVYEDLQEAKAVLADLQSQALLDPDDPITGQNIDRQKQKIEELT TEAMRLRDVLDRRNGYAEGFIFKTGEEAAGAKPPITDLNAAMSGTDSAAAKATANIKS FADAIRSLKGEVPELAKELQNLDKKAQIEAVYQAALSKAQGGREVALANEMRGKALSS LNIKSATDDPASYLSSVLASGKNASHVSGMQANFQKNLAAMIASMPKELQGSVTVNSG FRSVERQQQLWLEALKKYGSPEAARKWVAPPGNSQHNKGNAADLGYGSDAARKWVHAN ASNFGLSFPMSHEPWHVEDSSARSKDTAAEIERLTQAATRQADAYSQITAGAKEYTDS QRAEQQALGMTEQAAAALRYEQQMLAEAQRAGIALSPQQRSEIAQLAAGMAAAETSTE ALRLKQEQLSEAGNFFGGQMVDALSGIITGTTTWQQALQGILQSLVKVGLQAALLGTG PLAGLFGGSGGSSSGGMGGILGGLLGGLFGFERGGYTGDGGKSEPAGVVHKGEYVLSK RAVERLGVQNLDRMHRGALKGFESGGYVADRPTLSAGFSGGGNAAPVQAISISAPVTV NGSSGSPEQNQDLAKRMAREMESTMRGVVADEMMKQTRPGNFANSRSR" misc_feature complement(1761672..>1762010) /locus_tag="AGROH133_06876" /note="Phage-related minor tail protein; Region: PhageMin_Tail; pfam10145" /db_xref="CDD:192463" misc_feature complement(1760514..1760834) /locus_tag="AGROH133_06876" /note="D-alanyl-D-alanine carboxypeptidase; Region: VanY; cl00813" /db_xref="CDD:186202" misc_feature complement(<1760181..1760516) /locus_tag="AGROH133_06876" /note="type I restriction enzyme EcoKI subunit R; Provisional; Region: hsdR; PRK11448" /db_xref="CDD:183141" gene complement(1762277..1763896) /gene="terL2" /locus_tag="AGROH133_06877" /db_xref="GeneID:10267536" CDS complement(1762277..1763896) /gene="terL2" /locus_tag="AGROH133_06877" /note="Phage Terminase; Phage terminase-like protein, large subunit" /codon_start=1 /transl_table=11 /product="terminase large subunit/Phage Terminase" /protein_id="YP_004279065.1" /db_xref="GI:325293201" /db_xref="GeneID:10267536" /translation="MAGTYPDWVFDNSPIEDPFGYGERAVRFLRMLRHPSSSAPKRAF TLTRWQERIVRRIYGPRTPDGQMIVKSVLLLMPRGNRKTTLAAALALLHTIGPEAVAG GQAIFAAKDSDQAKIAFNEAAGIIREDKRLVAATKIYGSKTGKRLINCDVKKSSLEVL SSDGGKAHGLSPTFILADELHVWKNRELWEALKSSRVKKRPLTIIVSTAGAGNENLLY DEYVNACKIATGEKFNPSYLPILFMADPDDAWDDPATWHKANPGLADGFVSIEEFENL VTDARDRPQERFAFLQYNLNIWQGASREPLFDMGIYDEGHDPNFDLAELESLPCYIGV DMSVNGDLTAIVAAWKHGDGRIFTHPWFFVPGDDLKARAVKDAVPYEQWKADGHVIAV DGPIIEPEAVEQHIRDLCATFDVREIAFDPYLARKTMQRLHDDGLPAIEMRQAPLTMG PAIGDLERTVNGRMIRHNAHPVLRHHFDSVVASRGDTGLVRMHKDKRADRIDGAVAAA MAVSRAVQSNNTRSIYDLPEDDFDRLMQAAA" misc_feature complement(1762409..1763752) /gene="terL2" /locus_tag="AGROH133_06877" /note="Phage Terminase; Region: Terminase_1; pfam03354" /db_xref="CDD:112181" gene complement(1763897..1764289) /gene="terS2" /locus_tag="AGROH133_06878" /db_xref="GeneID:10267537" CDS complement(1763897..1764289) /gene="terS2" /locus_tag="AGROH133_06878" /note="Phage terminase, small subunit, , P27; Phage terminase, small subunit" /codon_start=1 /transl_table=11 /product="phage terminase, small subunit, , P27" /protein_id="YP_004279066.1" /db_xref="GI:325293202" /db_xref="GeneID:10267537" /translation="MSIHNRGVKPAIQRDSTALTKMPSPPKRLSPQAKAEWRRVFPVL IKRGVVTTGDLAGIESYCTAVGFVAQITEQMAGMAVPDMKLGGLQIRYMQTARQLASE YGLMPASRSRIGDAGPADDDDDNPLAVV" misc_feature complement(1763951..1764193) /gene="terS2" /locus_tag="AGROH133_06878" /note="Phage terminase, small subunit; Region: Terminase_4; cl01525" /db_xref="CDD:163988" gene complement(1764286..1764612) /locus_tag="AGROH133_06879" /db_xref="GeneID:10267538" CDS complement(1764286..1764612) /locus_tag="AGROH133_06879" /note="Protein of unknown function DUF1026; Bacteriophage head-tail adaptor" /codon_start=1 /transl_table=11 /product="phage head-tail adaptor" /protein_id="YP_004279067.1" /db_xref="GI:325293203" /db_xref="GeneID:10267538" /translation="MAEMINAGKMDRRITIERQTEIVKPSGDVVRAWATVAVVWAEII QQSATEFFTGFGEAETGSIIFRIRYMPGITTADRVSYNGNAYGLKEIKEIGRYEALEL RGEVLK" misc_feature complement(1764328..1764582) /locus_tag="AGROH133_06879" /note="Phage head-tail joining protein; Region: Phage_H_T_join; cl11461" /db_xref="CDD:196243" gene complement(1764600..1765052) /locus_tag="AGROH133_06880" /db_xref="GeneID:10267539" CDS complement(1764600..1765052) /locus_tag="AGROH133_06880" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279068.1" /db_xref="GI:325293204" /db_xref="GeneID:10267539" /translation="MGRHDQRMSIEPVLTLQTAIRNRLIHKPEVTALVPPTHIRAGST RPDKTPCIVIADGNTELHGNDYRAQTAAWVYLDLHVWTLDAGQDASKEIAAAVNAALS KYNLSAEMESAGAYCDHFKVTTIRHPRDPDPQYGHSILSVEALIRWLK" gene complement(1765028..1765453) /locus_tag="AGROH133_06881" /db_xref="GeneID:10267540" CDS complement(1765028..1765453) /locus_tag="AGROH133_06881" /note="Phage protein, HK97, gp10" /codon_start=1 /transl_table=11 /product="phage protein, HK97, GP10" /protein_id="YP_004279069.1" /db_xref="GI:325293205" /db_xref="GeneID:10267540" /translation="MANDGLDDLMKAFDRVKKAPRDAVLKALTTSAESIASTQRALAP EDTGALKNSIAVTLPGQSTPPYSQPGGNRVAGDNEVIITVGDSDTRYPHLVEYGTAAA DAQPFFWPGFRLQRKRAQQRIDRAGRKAIRQAWEGTTSE" misc_feature complement(1765091..1765435) /locus_tag="AGROH133_06881" /note="Bacteriophage protein of unknown function (DUF646); Region: DUF646; cl12124" /db_xref="CDD:196347" gene complement(1765443..1765745) /locus_tag="AGROH133_06882" /db_xref="GeneID:10267541" CDS complement(1765443..1765745) /locus_tag="AGROH133_06882" /codon_start=1 /transl_table=11 /product="phage protein DNA packaging protein" /protein_id="YP_004279070.1" /db_xref="GI:325293206" /db_xref="GeneID:10267541" /translation="MTGITHDLAKQHMRIDHHEEDALIMLYIEAAEQYVANYIGRSLD DFDPFPSDLKVAILRLVAFYYEVRNVATFGISSQIAPQTITQTLDNYRESWFHDGE" misc_feature complement(1765470..1765727) /locus_tag="AGROH133_06882" /note="Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; Region: gp6; cd08054" /db_xref="CDD:153446" misc_feature complement(order(1765473..1765478,1765485..1765490, 1765494..1765505,1765509..1765514,1765542..1765550, 1765554..1765562,1765566..1765574,1765581..1765583, 1765590..1765598,1765635..1765637,1765644..1765649, 1765656..1765661,1765665..1765670,1765677..1765682, 1765704..1765706,1765710..1765715,1765722..1765724)) /locus_tag="AGROH133_06882" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153446" gene complement(1765742..1766512) /locus_tag="AGROH133_06883" /db_xref="GeneID:10267542" CDS complement(1765742..1766512) /locus_tag="AGROH133_06883" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279071.1" /db_xref="GI:325293207" /db_xref="GeneID:10267542" /translation="MTPETILEHDGIQQPVIEWALDYGITPAIIIGRLERGLSIADAI TTPMKIGHQHQRLPIFSNTQVNAKHEAVGEKHTANGETKTTAEWAAYIGVSKPTLDKW LSNLTIEQAIAHGEKTKTTRPNALHTYEGQSKTLTEWAAYIGVEIGTLYGRLRTMTLA EALAMPPVKGRVAKLHTINGESKTFAEWCAVHGRVKSTVANLMKRRGLTLEEALIARK PINTPRGVSDNFHAGLGTGAGRFVQENPEIIFHKEAAE" gene 1766548..1766733 /locus_tag="AGROH133_06885" /db_xref="GeneID:10267543" CDS 1766548..1766733 /locus_tag="AGROH133_06885" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279072.1" /db_xref="GI:325293208" /db_xref="GeneID:10267543" /translation="MARRAKGLPVTAKPEEALVATMGNDVIDNGGEVPAHPARGVCTQ IFTTGFTPLMVITAKGC" gene complement(1766847..1767464) /locus_tag="AGROH133_06886" /db_xref="GeneID:10267544" CDS complement(1766847..1767464) /locus_tag="AGROH133_06886" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279073.1" /db_xref="GI:325293209" /db_xref="GeneID:10267544" /translation="MRKQRASFEQVEISHGGNAVTLRPSLRAATILEERYGLPALHAA LEDLNYTIISEIIRASEISSGTPNAAAFLTAVQRKPLFPFFLAVRAPLFELVSMLTPA PEKRVQPLHTTGKQVTWAEVFAALYDRATGWLGWTPEQAWNATPTEIDRAYRAHLEKL KAIHGGGSDEKEADPEQAERNIAAGLDPEFDRAGLLALKSSGRRK" gene complement(1767468..1769039) /locus_tag="AGROH133_06887" /db_xref="GeneID:10267545" CDS complement(1767468..1769039) /locus_tag="AGROH133_06887" /note="phage major capsid protein, HK97 family; Predicted phage phi-C31 gp36 major capsid-like protein" /codon_start=1 /transl_table=11 /product="possible phage phi-C31 gp36-like protein / Major capsid protein, HK97 family" /protein_id="YP_004279074.1" /db_xref="GI:325293210" /db_xref="GeneID:10267545" /translation="MTAAASTIETGNLEIKADVSIDDTGTVTGIAWPFGQPDSYGDLI EPSAFSFAPRVPMIVEHEQKSVVGVWESYSVTDKGLEVKGRLFVEGIEPARQARLALQ RGTMSGLSIGYRLHEAKARPAGGRVLTALTINEISLCKRPVHPDARITETKSHPLNVE QENPKMENAEQNKPVANADPVVSAEEIKALKDDIATMQAKLNRRPAADNNNHPKASND NGNEVKAFSDFVRTGDASEVKALAYGGSSTGGILAPEAVATTILEKVAEYSPVRGLAQ TIAMSGPLLQLPRLVDEVTPAPRAETATAAEDEPSFEQIDLKPFEMAVSIPVTRILLE DAQIDLAAFLSNHIARRFGQIEASWFVNGNGTTQAEGVLKSTDVEEVAVATAAGFNAE SLIDLYYFIKTSYSVNGSWLMNRKTMSVVRKLKDSDGTYIWQPGITAGQPSLLLGRPV YEAVDAPDIAAGKTPIIFGDFASGYAIADRVGFDIIRDDITGAGNGVVKLHARRRVGG RVIMGEALAKLKITA" misc_feature complement(1768554..1769006) /locus_tag="AGROH133_06887" /note="Caudovirus prohead protease; Region: Peptidase_U35; cl01521" /db_xref="CDD:163987" misc_feature complement(1767510..1768565) /locus_tag="AGROH133_06887" /note="phage major capsid protein, HK97 family; Region: major_cap_HK97; TIGR01554" /db_xref="CDD:162419" misc_feature complement(1767477..1768295) /locus_tag="AGROH133_06887" /note="Phage capsid family; Region: Phage_capsid; pfam05065" /db_xref="CDD:147312" gene complement(1769036..1769374) /locus_tag="AGROH133_06888" /db_xref="GeneID:10267546" CDS complement(1769036..1769374) /locus_tag="AGROH133_06888" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279075.1" /db_xref="GI:325293211" /db_xref="GeneID:10267546" /translation="MTEHRAFFGDGEKAFAFPTRDLIIELETKTGHGVGALFRRFRDT SYSFTDVSEIIRLGLIGGGTAPEEANRLVSVYVIGRPLAEVFAVADGVITTLFFGVEA VNDAISQVAE" misc_feature complement(1769072..1769368) /locus_tag="AGROH133_06888" /note="Protein of unknown function (DUF3356); Region: DUF3356; pfam11836" /db_xref="CDD:152272" gene complement(1769371..1770594) /locus_tag="AGROH133_06889" /db_xref="GeneID:10267547" CDS complement(1769371..1770594) /locus_tag="AGROH133_06889" /note="Phage portal protein; Phage-related protein" /codon_start=1 /transl_table=11 /product="head portal protein, HK97 family" /protein_id="YP_004279076.1" /db_xref="GI:325293212" /db_xref="GeneID:10267547" /translation="MGFWSEVRNKIGIGERKAYLLSNPAVSEIFGVRSTASGVSVGGL AALNTPAVLQAVRLISETIGSLPVKLYREQAEAKEIATKHTAHKIVHKRANEWTGAGA IRTQLTSDALIYGNGFARVVRYPDGRPFELIRLLPGTVSVMEDSLGAAPPFYRVSENG GSRDYPHTEILHIPSFLNRSPISFGREAIGLASVLEKHGATFFTSGARPNAIISNEKA QGGEAGATIISNMRKSVREWMRGGSADPLILDGGWKYEAPALTSTDSQYVENRLEQIN EVARIFGVPPHLLFQLERATWSNAEQMGASFLQLCLRPWLDKWQEALATVLLTELEQN DHWFEFVVDDLMRADMASRTANITALVTNRVMSPNEARAILNMPPLPGGDELINPHTT SGATPVAAPEKEPAK" misc_feature complement(1769467..1770498) /locus_tag="AGROH133_06889" /note="Phage portal protein; Region: Phage_portal; pfam04860" /db_xref="CDD:147162" misc_feature complement(1769437..1770495) /locus_tag="AGROH133_06889" /note="Phage-related protein [Function unknown]; Region: COG4695; cl01923" /db_xref="CDD:194210" gene complement(1770727..1772280) /locus_tag="AGROH133_06890" /db_xref="GeneID:10267548" CDS complement(1770727..1772280) /locus_tag="AGROH133_06890" /note="DNA breaking-rejoining enzyme, catalytic core; Integrase" /codon_start=1 /transl_table=11 /product="site-specific recombinase, phage integrase family" /protein_id="YP_004279077.1" /db_xref="GI:325293213" /db_xref="GeneID:10267548" /translation="MAGKPQHWKERNGRYSARIVIPSPLRPYLDNRAELEIQLGGDRR TALRNHAAAVASMQRQIGIARLKHEAATGQQPKPAAYPLTAQQIALRDYHSQISFDAE IREHDPRYAQIDPDPAYDAHPFRDGFAGKLSDDELEELVGSRIERTRLAGNTDAVKGT PEWRALAQALFIASYEAVARRYERNDGDFNGEPSHPMLVEAVRREESQPIASPFAGIT FEDVIKEQERLASIGLSRPKSEATLEKYRNAKDDFETFRKDKAVATVTLAEGRAWRDH MLVDGKLSRKTVHDKITIIRTLMGEANKQAENQMFPQGEPWAALELPVVQKGDSAERT YSLKDARHFLEFARSATRASFRWIPWIIAHTGARVNEITVLEKRDIFEVEGFWFIHIR VGDGRKTKTHRARKVPVHPGLIKEGFIEWVKAQPNGKLFPGGKNEDQRLREWIHEKVF PKRTDLPPPNHGFRHLFEDALSGGVSERAALYIMGRSSGSSADDYGGSDVKLVEIAKQ MKTVRDIIT" misc_feature complement(1770826..1771239) /locus_tag="AGROH133_06890" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213" /db_xref="CDD:193712" misc_feature complement(order(1770889..1770891,1770898..1770900, 1771081..1771083,1771177..1771179)) /locus_tag="AGROH133_06890" /note="Int/Topo IB signature motif; other site" /db_xref="CDD:29495" misc_feature complement(order(1770889..1770891,1770898..1770900, 1771177..1771179)) /locus_tag="AGROH133_06890" /note="active site" /db_xref="CDD:29495" misc_feature complement(order(1770898..1770906,1771081..1771083, 1771174..1771179)) /locus_tag="AGROH133_06890" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29495" gene complement(1772372..1772448) /locus_tag="AGROH133_06891" /db_xref="GeneID:10267549" tRNA complement(1772372..1772448) /locus_tag="AGROH133_06891" /product="tRNA-Pro" /db_xref="GeneID:10267549" gene 1772714..1773019 /locus_tag="AGROH133_06892" /db_xref="GeneID:10267550" CDS 1772714..1773019 /locus_tag="AGROH133_06892" /codon_start=1 /transl_table=11 /product="NADH-ubiquinone oxidoreductase protein" /protein_id="YP_004279078.1" /db_xref="GI:325293214" /db_xref="GeneID:10267550" /translation="MSAKIYRPAKTAMQSGKAKTNVWVLEFDAEVPRKIDPIMGYTST SDMKQQVKLTFETQEQAEAYAQRKGIEYRVIQPKEATRKVVSYTDNFRFNRTQPWTH" misc_feature 1772714..1773016 /locus_tag="AGROH133_06892" /note="ETC complex I subunit conserved region; Region: ETC_C1_NDUFA4; pfam04800" /db_xref="CDD:113566" gene 1773071..1773147 /locus_tag="AGROH133_06893" /db_xref="GeneID:10267551" tRNA 1773071..1773147 /locus_tag="AGROH133_06893" /product="tRNA-Arg" /anticodon=(pos:1773105..1773107,aa:Arg) /db_xref="GeneID:10267551" gene complement(1773155..1773892) /locus_tag="AGROH133_06894" /db_xref="GeneID:10267552" CDS complement(1773155..1773892) /locus_tag="AGROH133_06894" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279079.1" /db_xref="GI:325293215" /db_xref="GeneID:10267552" /translation="MVINDGTGWTLRAAASSYVGFLACGTDIPVLADRPRGSVAEASA LLAAAEALTGCKIDLVTIDMPLSHQPITARRASDNLVSSAYGSRQCSTHTPNAIRPGK VSDDLKMGFELAGYPLLTREISSPGLLEVYPHPALVELTNAAERLPYKQGKVGSYWRS DTSADRRAKLLEVWSFIIAHLDRRIGGVADALIIPATNAKGWEMKAFEDKMDAVVCAW VGICALESEAVPYGDDISAIWIPKAAV" misc_feature complement(1773194..>1773718) /locus_tag="AGROH133_06894" /note="Protein of unknown function (DUF429); Region: DUF429; cl12046" /db_xref="CDD:159706" gene complement(1773957..1774112) /locus_tag="AGROH133_06895" /db_xref="GeneID:10267553" CDS complement(1773957..1774112) /locus_tag="AGROH133_06895" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279080.1" /db_xref="GI:325293216" /db_xref="GeneID:10267553" /translation="MNDNVVKFRKPVPPKKPRQPLGPKSKKALTIAAIIAFFAAAWGY FTLFGQG" gene 1774349..1775647 /locus_tag="AGROH133_06897" /db_xref="GeneID:10267554" CDS 1774349..1775647 /locus_tag="AGROH133_06897" /note="efflux transporter, RND family, MFP subunit; Membrane-fusion protein" /codon_start=1 /transl_table=11 /product="HlyD family secretion protein" /protein_id="YP_004279081.1" /db_xref="GI:325293217" /db_xref="GeneID:10267554" /translation="MNDANTNGRDTENSQPDLRDILGTSRSGRKKKSRRYLYAAAAVV LIGGGLGYYYQSRAAGVAYTYTTEAARQGDLSVIVTSTGSVQPTDQVDISSELSGTIR KVNVTYNSPVKSGDILAELDTNKLEADVQSARAKLASAKANVLKARADLGSAKTSMER LRSLVQSRVSSQQDLDAAQFNHDAASATLQVNEATVLSAEADLRLAEVNLGKAKIVSP IDGVILTRSVDPGATVASSLNAPVLFTIAGDLRHMELQVSVDEADVGKVETGQKATFN VDAYPDRSFPAEIETVRFASETVSNVVTYKGILTVDNEELLLRPGMTATANIVVEEIK NTLLVPNSALRYTPPRESASRGGGLMSLFRPPRMGRSQNRDAGPAATGKRTVWVLRNN TPVSVSIETGSTDGQHTVVKSGELKADDLVITDASARNAG" misc_feature 1774544..1775623 /locus_tag="AGROH133_06897" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 1775662..1776381 /locus_tag="AGROH133_06899" /db_xref="GeneID:10267555" CDS 1775662..1776381 /locus_tag="AGROH133_06899" /EC_number="3.6.3.-" /note="ABC transporter related; ABC-type antimicrobial peptide transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279082.1" /db_xref="GI:325293218" /db_xref="GeneID:10267555" /translation="MQQAPLIEFRDVVKQYGRGEATIRALDGVSLSIHEKEFVAIMGP SGSGKSTSMNIIGCLDVPTSGEYLFQGVPTSGFDNEHLTLLRRHMLGFVFQGFNLLSR TSAVENVELPLVYRGMKASERRARAMEALAQVGLNGREHHTTQELSGGQQQRVAIARA IVTRPALLLADEPTGNLDTKTSAEIMELITTLNRDKGITVVMVTHEEDIAAHAGRLLR FVDGHLASDSAAENKETSDVL" misc_feature 1775677..1776345 /locus_tag="AGROH133_06899" /note="ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136" /db_xref="CDD:31331" misc_feature 1775680..1776333 /locus_tag="AGROH133_06899" /note="This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255" /db_xref="CDD:73014" misc_feature 1775788..1775811 /locus_tag="AGROH133_06899" /note="Walker A/P-loop; other site" /db_xref="CDD:73014" misc_feature order(1775797..1775802,1775806..1775814,1775944..1775946, 1776172..1776177,1776274..1776276) /locus_tag="AGROH133_06899" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73014" misc_feature 1775935..1775946 /locus_tag="AGROH133_06899" /note="Q-loop/lid; other site" /db_xref="CDD:73014" misc_feature 1776100..1776129 /locus_tag="AGROH133_06899" /note="ABC transporter signature motif; other site" /db_xref="CDD:73014" misc_feature 1776160..1776177 /locus_tag="AGROH133_06899" /note="Walker B; other site" /db_xref="CDD:73014" misc_feature 1776184..1776195 /locus_tag="AGROH133_06899" /note="D-loop; other site" /db_xref="CDD:73014" misc_feature 1776262..1776282 /locus_tag="AGROH133_06899" /note="H-loop/switch region; other site" /db_xref="CDD:73014" gene 1776371..1777579 /locus_tag="AGROH133_06900" /db_xref="GeneID:10267556" CDS 1776371..1777579 /locus_tag="AGROH133_06900" /EC_number="3.6.3.-" /note="Protein of unknown function DUF214, permase ; ABC-type antimicrobial peptide transport system, permease component" /codon_start=1 /transl_table=11 /product="macrolide export ATP-binding/permease protein" /protein_id="YP_004279083.1" /db_xref="GI:325293219" /db_xref="GeneID:10267556" /translation="MFFETSRLALRAISRNLLRSFLTVLGVVIGVAAVIAMVTIGNGT TEQVKSELSRLGTNMLFVRPGQFGPGRASTEAKRFDDRDVEAIRNQISGLRAVAPQNR SSAATVIFGGKNHQTSVIGTTNDYLVAQDWTLALGRDFQPAEDRGGQIGCIIGETVRQ ELFGAENPVGQTIRVSNISCPVIGVLARKGQSGLGDDQDDTIIMPLKIHQRRIGGTTT ISSIMVSAQDGVSTAKVQSDLQNLLRERRRINIGREDDFTVNDMTQIASAMTGTTTLL TGLLGAVAAVSLLVGGIGIMNIMLVSVTERTREIGIRLAIGALEKQVLTQFLVESVML SALGGTVGILTGLGLAYGVVSFLNVPFVTSPSIIFLAFAFSAAIGVIFGYFPARRAAS LSPIEALRHE" misc_feature 1776494..1777576 /locus_tag="AGROH133_06900" /note="ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; Region: SalY; COG0577" /db_xref="CDD:30922" misc_feature 1776512..1777165 /locus_tag="AGROH133_06900" /note="MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704" /db_xref="CDD:193180" misc_feature 1777247..1777555 /locus_tag="AGROH133_06900" /note="FtsX-like permease family; Region: FtsX; pfam02687" /db_xref="CDD:190390" gene 1777642..1777923 /locus_tag="AGROH133_06906" /db_xref="GeneID:10267557" CDS 1777642..1777923 /locus_tag="AGROH133_06906" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279084.1" /db_xref="GI:325293220" /db_xref="GeneID:10267557" /translation="MFKSISDSAAAADGGSLALFVERIDGQTELFVINRSLASRGTPD YNKVSSSLRPLAEEDCGKIAAALEPLLTTTPSIHPLADFIDTLKQQTSR" gene complement(1777945..1778334) /locus_tag="AGROH133_06907" /db_xref="GeneID:10267558" CDS complement(1777945..1778334) /locus_tag="AGROH133_06907" /note="Iron-sulphur cluster biosynthesis; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster insertion protein" /protein_id="YP_004279085.1" /db_xref="GI:325293221" /db_xref="GeneID:10267558" /translation="MGFAIMTMTGAAASRVKAIVENSGPDAKGVRVGIKKGGCAGMEY TIDLVTEADAKDDLVEFDGAKVWVQPSAVLYLLGTQMDFEVTKMRSGFTFNNPNQTSA CGCGESVELKPADLAALAKQREAEASV" misc_feature complement(1778002..1778325) /locus_tag="AGROH133_06907" /note="Iron-sulphur cluster biosynthesis; Region: Fe-S_biosyn; cl00400" /db_xref="CDD:189093" gene complement(1778447..1778830) /locus_tag="AGROH133_06908" /db_xref="GeneID:10267559" CDS complement(1778447..1778830) /locus_tag="AGROH133_06908" /note="SUF system FeS cluster assembly associated, Domain of unknown function DUF59; Predicted metal-sulfur cluster biosynthetic enzyme" /codon_start=1 /transl_table=11 /product="FeS assembly SUF system protein" /protein_id="YP_004279086.1" /db_xref="GI:325293222" /db_xref="GeneID:10267559" /translation="MTAEATAKTHDVTEDAAKPSSIAPDELARLSDDVIAALKTVYDP EIPADIFELGLVYKIDIEDDRMVKIVMTLTAPGCPVAGEMPGWVENAVGAVEGVSGVE VSMTFDPPWTPDRMSEEAQVAVGWY" misc_feature complement(1778450..1778746) /locus_tag="AGROH133_06908" /note="Domain of unknown function DUF59; Region: DUF59; cl00941" /db_xref="CDD:176589" gene complement(1778854..1780104) /gene="nifS" /locus_tag="AGROH133_06909" /db_xref="GeneID:10267560" CDS complement(1778854..1780104) /gene="nifS" /locus_tag="AGROH133_06909" /EC_number="2.8.1.7" /note="Pyridoxal phosphate-dependent transferase, major region; Selenocysteine lyase/Cysteine desulfurase" /codon_start=1 /transl_table=11 /product="cysteine desulfurase" /protein_id="YP_004279087.1" /db_xref="GI:325293223" /db_xref="GeneID:10267560" /translation="MPESERAALAAPYDVEAVRKDFPILSREVYGKPLVYLDNGASAQ KPQVVIDAVSHAYSNEYANVHRGLHFLSNAATDAYEAAREKVRRFLNAGSVDEIVFTK SSTEAINTVAYGYGMPKIGEGDEIVISIMEHHSNIVPWHFIRERQGAKLVWVPVDDDG AFHIEAFEKSLTERTKLVAITHMSNALGTIVPVKEICRIAHERGIPVLVDGSQGAVHM PVDVRDIDCDWYVMTGHKLYGPSGIGVLYGKADRLSEMRPFQGGGEMILDVSEDNVTY NEPPHRFEAGTPPIVQAIGLGYALDYMDNLGRAAIAAHEADLAAYAAERLREVNSLRI IGNAPDKGGIFSFELEGIHAHDVSMVIDRRGVAVRAGTHCAMPLLKRFGVTSTCRASF GLYNTRAEVDRLVEALDYARKFFA" misc_feature complement(1778863..1780074) /gene="nifS" /locus_tag="AGROH133_06909" /note="Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520" /db_xref="CDD:30866" misc_feature complement(1778881..1780002) /gene="nifS" /locus_tag="AGROH133_06909" /note="Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453" /db_xref="CDD:99746" misc_feature complement(order(1779397..1779402,1779406..1779408, 1779466..1779471,1779475..1779477,1779706..1779708, 1779781..1779783,1779790..1779795)) /gene="nifS" /locus_tag="AGROH133_06909" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99746" misc_feature complement(1779397..1779399) /gene="nifS" /locus_tag="AGROH133_06909" /note="catalytic residue [active]" /db_xref="CDD:99746" gene complement(1780097..1781368) /gene="sufD" /locus_tag="AGROH133_06910" /db_xref="GeneID:10267561" CDS complement(1780097..1781368) /gene="sufD" /locus_tag="AGROH133_06910" /note="SUF system FeS cluster assembly, SufD; ABC-type transport system involved in Fe-S cluster assembly, permease component" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly protein" /protein_id="YP_004279088.1" /db_xref="GI:325293224" /db_xref="GeneID:10267561" /translation="MNIQTTNRLTPAETALIDAYTAKFSELPGNGAVVAARDVLFDDL KTGGLPTRRIEAWHYTDLKSLLRAIPEDQPAPVIEKQASVVAGSSVAYVLHGTANVGK IEDISVSSFAESLLDGSAATGLAEASKDDVIGRINGSFVRDGLMLDIPADAEIEKPIE LQAIHGAGQVHSRFPVRFGKGSKATVIERHLSVTSDAALVSSVTDIVVEDGAEVTWII LQQQGAADIHLGQLRMKIGADAKIRLFVINAGGKLVRQELRIDVDGEGTDLTVRGVNL LGGETHTDVTMVLGHNVPNTTSTEVFRNVVFDRAKGIFQGMIRVAPDAQKTDAKMACN TLLMSDDGEFSAKPELEIFADDVQCGHGATVADIDDNHLYYLMARGVPRAKARAMLVN AFVAEIAEELEEENLVEALETIISGWLEHHA" misc_feature complement(1780184..1781323) /gene="sufD" /locus_tag="AGROH133_06910" /note="Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]; Region: SufB; COG0719" /db_xref="CDD:31063" misc_feature complement(1780184..1780954) /gene="sufD" /locus_tag="AGROH133_06910" /note="Uncharacterized protein family (UPF0051); Region: UPF0051; cl03223" /db_xref="CDD:189167" gene complement(1781393..1782148) /gene="sufC" /locus_tag="AGROH133_06911" /db_xref="GeneID:10267562" CDS complement(1781393..1782148) /gene="sufC" /locus_tag="AGROH133_06911" /note="SUF system FeS cluster assembly, SufC ATPase; ABC-type oligopeptide transport system, ATPase component" /codon_start=1 /transl_table=11 /product="FeS assembly ATPase SufC" /protein_id="YP_004279089.1" /db_xref="GI:325293225" /db_xref="GeneID:10267562" /translation="MLEIIDLHAKIADTETEIIKGLNLKVAAGEVAAIMGPNGSGKST LSYILSGREDYEVTSGDILYNGESILELDAAERAAKGIFLAFQYPVEIPGVATMQFLK VAMNEQRKARGEAELTTPDFIRRVKEAAGDLKIDMDMLKRPLNVGFSGGEKKRAEILQ MALLEPKLCVLDETDSGLDIDALKIVADGVNALKSPDRATVVITHYQRLLDYIVPDSV HVLYKGKIIRSGDKALALELENNGYADIIGEAA" misc_feature complement(1781411..1782145) /gene="sufC" /locus_tag="AGROH133_06911" /note="FeS assembly ATPase SufC; Region: sufC; TIGR01978" /db_xref="CDD:162636" misc_feature complement(1781420..1782145) /gene="sufC" /locus_tag="AGROH133_06911" /note="ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under...; Region: ABC_FeS_Assembly; cd03217" /db_xref="CDD:72976" misc_feature complement(1782020..1782043) /gene="sufC" /locus_tag="AGROH133_06911" /note="Walker A/P-loop; other site" /db_xref="CDD:72976" misc_feature complement(order(1781534..1781536,1781630..1781635, 1781888..1781890,1782017..1782025,1782029..1782034)) /gene="sufC" /locus_tag="AGROH133_06911" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72976" misc_feature complement(1781888..1781899) /gene="sufC" /locus_tag="AGROH133_06911" /note="Q-loop/lid; other site" /db_xref="CDD:72976" misc_feature complement(1781678..1781707) /gene="sufC" /locus_tag="AGROH133_06911" /note="ABC transporter signature motif; other site" /db_xref="CDD:72976" misc_feature complement(1781630..1781647) /gene="sufC" /locus_tag="AGROH133_06911" /note="Walker B; other site" /db_xref="CDD:72976" misc_feature complement(1781612..1781623) /gene="sufC" /locus_tag="AGROH133_06911" /note="D-loop; other site" /db_xref="CDD:72976" misc_feature complement(1781528..1781548) /gene="sufC" /locus_tag="AGROH133_06911" /note="H-loop/switch region; other site" /db_xref="CDD:72976" gene complement(1782221..1783690) /gene="sufB" /locus_tag="AGROH133_06912" /db_xref="GeneID:10267563" CDS complement(1782221..1783690) /gene="sufB" /locus_tag="AGROH133_06912" /note="with SufCD activates cysteine desulfurase SufS; ABC-type transport system involved in Fe-S cluster assembly, permease component" /codon_start=1 /transl_table=11 /product="FeS assembly protein SufB" /protein_id="YP_004279090.1" /db_xref="GI:325293226" /db_xref="GeneID:10267563" /translation="MAAVQETIDQVRQIDVDQYKYGFETEIEVDKAPKGLSEEVIRFI SAKKQEPEWMLEWRLEAYKRWLTMEEPTWARVSYPKIDFNDLYYYAAPKSTPGPKSLD EVDPELLKVYEKLGIPLKEQEILAGVENRRVAVDAVFDSVSVVTTFKAELAKAGVIFM SISEAVREYPDLVKKYLGSVVPQTDNFYATLNSAVFTDGSFVFVPKGVRCPMELSTYF RINEKNTGQFERTLIIAEEGAYVSYLEGCTAPQRDENQLHAAVVELVALDDAEIKYST VQNWYPGDKDGKGGIYNFVTKRGDCRGNRSKISWTQVETGSAITWKYPSCILRGDDSR GEFYSIAVSNGHQQIDSGTKMIHLGKNTSSRIIAKGIAAGFSENVYRGQVSAHRKATN TRNFTQCDSLLIGDKCGAHTVPYIEAKNSSAHFEHEATTSKISEDQLFYCLQRGIPEE SAIALIVNGFVKDVIQQLPMEFAVEAQKLIGISLEGSVG" misc_feature complement(1782224..1783690) /gene="sufB" /locus_tag="AGROH133_06912" /note="Uncharacterized protein family (UPF0051); Region: UPF0051; cl03223" /db_xref="CDD:189167" misc_feature complement(1782224..1783660) /gene="sufB" /locus_tag="AGROH133_06912" /note="putative ABC transporter; Region: ycf24; CHL00085" /db_xref="CDD:177024" gene complement(1783891..1785102) /gene="nifS2" /locus_tag="AGROH133_06913" /db_xref="GeneID:10267564" CDS complement(1783891..1785102) /gene="nifS2" /locus_tag="AGROH133_06913" /EC_number="2.8.1.7" /note="Pyridoxal phosphate-dependent transferase, major region; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes" /codon_start=1 /transl_table=11 /product="nitrogenase cofactor synthesis protein nifS" /protein_id="YP_004279091.1" /db_xref="GI:325293227" /db_xref="GeneID:10267564" /translation="MRFGAWKIERSFSAMTVLTRTYMDWNATAPLLPAVRDVLVRALD ITGNPSSVHREGRAARAAVEAARRDVAVVCGAQASHVTFTSGATEAANLVLSPEFKMG RAPVRYGRLYVSAIEHPAFREGGRFDKADVTEIPVTSAGVIDLAALEALLSSHDKSTG LPMVACMLVNNETGILQPVAEAARLSHAAGGLMVVDAVQAAGRIPLDINALDADFLVI SSHKLGGPKGAGALVSRGEVMMPKPLIHGGGQEKGHRSGTENTLSVIGFGAAAAIAAQ NLETEATRLAALRARLEDGMRAVAPDVIIYGEDVGRVGNTTFFTLPGLKAETGQIAFD IEGIALSAGSACSSGKVGESHVLTAMGRDPKLGALRISLGHATDEADIERALAAFTKI AGRRRLTGQAA" misc_feature complement(1783918..1785042) /gene="nifS2" /locus_tag="AGROH133_06913" /note="Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520" /db_xref="CDD:30866" misc_feature complement(1783939..1785042) /gene="nifS2" /locus_tag="AGROH133_06913" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321" /db_xref="CDD:193768" misc_feature complement(order(1784437..1784439,1784446..1784448, 1784506..1784508,1784515..1784517,1784599..1784601, 1784830..1784832,1784839..1784844)) /gene="nifS2" /locus_tag="AGROH133_06913" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature complement(1784437..1784439) /gene="nifS2" /locus_tag="AGROH133_06913" /note="catalytic residue [active]" /db_xref="CDD:99742" gene 1785272..1785949 /locus_tag="AGROH133_06914" /db_xref="GeneID:10267565" CDS 1785272..1785949 /locus_tag="AGROH133_06914" /note="Predicted hydrolase of the alpha/beta superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279092.1" /db_xref="GI:325293228" /db_xref="GeneID:10267565" /translation="MPEVIFNGPAGRLEGRYQPSKEKSAPIAIILHPHPQFGGTMNNQ IVYQLFYLFQKRGFTTLRFNFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPDSKSC WVAGYSFGAWIGMQLLMRRPEIEGFMSIAPQPNTYDFSFLAPCPSSGLIINGDADKVA PEKDVNGLVEKLKTQKGILITHRTLPGANHFFNGKVDELMSECEDYLDRRLNGELVPE PAAKRIR" misc_feature 1785272..1785907 /locus_tag="AGROH133_06914" /note="Predicted hydrolase of the alpha/beta superfamily [General function prediction only]; Region: COG2945" /db_xref="CDD:32768" gene complement(1786187..1787308) /gene="anmK" /locus_tag="AGROH133_06915" /db_xref="GeneID:10267566" CDS complement(1786187..1787308) /gene="anmK" /locus_tag="AGROH133_06915" /EC_number="2.7.7.-" /note="catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; Predicted molecular chaperone distantly related to HSP70-fold metalloproteases" /codon_start=1 /transl_table=11 /product="anhydro-N-acetylmuramic acid kinase" /protein_id="YP_004279093.1" /db_xref="GI:325293229" /db_xref="GeneID:10267566" /translation="MGEVKTAIGLMSGTSMDGIDIALLRTDGENVVRHGPSGYFPYDP GLRATWQKALVTAKAIRERRERPGDLADAERKLTLAHAAAVKSFLHRHRLEASDIDVI GFHGQTVLHRPDEALTVQIGDGALLAEETGIDVVYDMRANDMVHGGQGAPLIPAYHMA LSANLPEGFETPAVFVNIGGISNLTYIGEAGRLAAFDSGPGNMLIDQWIEAHTGKAFD KGGRTAAGGSVVASLVTRYMESPFFSANIRRSLDRSDFVPPQKGEVSLADGARTLSHL TGAAILKSASYLPEAAKTYVICGGGRLNPVIMEEFASLAAKQGARVIAAEEAGFDGGA MEAEAWAYLAVRSLKGLPLTYPGTTGVNEPVTGGVLVRA" misc_feature complement(1786190..1787293) /gene="anmK" /locus_tag="AGROH133_06915" /note="Uncharacterised protein family (UPF0075); Region: UPF0075; cl04217" /db_xref="CDD:194801" gene 1787459..1788712 /gene="tyrS" /locus_tag="AGROH133_06916" /db_xref="GeneID:10267567" CDS 1787459..1788712 /gene="tyrS" /locus_tag="AGROH133_06916" /EC_number="6.1.1.1" /codon_start=1 /transl_table=11 /product="Tyrosyl-tRNA synthetase" /protein_id="YP_004279094.1" /db_xref="GI:325293230" /db_xref="GeneID:10267567" /translation="MSRFKSDFLRTLDERGFIHQISDESGLDELFAKETVTAYIGYDP TASSLHVGHLTQIMMLHWMQKTGHQPISLMGGGTGMVGDPSFKEEARKLMTIDMIEDN ITSLKHVFANYLDYDRAENPALMINNADWLRGLNYLEFLRDVGRHFSVNRMLSFDSVK TRLDREQSLSFLEFNYMILQAYDFVELNQRTGCRLQMGGSDQWGNIINGIDLGHRMGT PQLYALTSPLLTTSSGAKMGKSASGAVWLNKDLLPVYDFWQYWRNTEDADVVRFAKLF TTLPMDEIERIAALGGSEINEAKKILATEVTAILHGRAAAEEAAETARKTFEEGALAE NLPSIEVPASELDAGVGVLSLIVRAGLAGSNGEARRHVQGGAVKINDKGVSDDRQMIG SAEITGDGIIKLSVGKKKHVLVRPA" misc_feature 1787468..1788706 /gene="tyrS" /locus_tag="AGROH133_06916" /note="tyrosyl-tRNA synthetase; Validated; Region: PRK05912" /db_xref="CDD:180311" misc_feature 1787564..1788385 /gene="tyrS" /locus_tag="AGROH133_06916" /note="catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805" /db_xref="CDD:173902" misc_feature order(1787573..1787575,1787579..1787587,1787606..1787608, 1787612..1787617,1787984..1787986,1787996..1787998, 1788005..1788007,1788044..1788046,1788050..1788055, 1788062..1788064,1788140..1788145,1788164..1788175) /gene="tyrS" /locus_tag="AGROH133_06916" /note="active site" /db_xref="CDD:173902" misc_feature 1787606..1787617 /gene="tyrS" /locus_tag="AGROH133_06916" /note="HIGH motif; other site" /db_xref="CDD:173902" misc_feature order(1787687..1787689,1787696..1787701,1787867..1787872, 1787876..1787884,1787891..1787896,1787900..1787911, 1787915..1787920,1787972..1787974,1787978..1787983, 1787990..1787995) /gene="tyrS" /locus_tag="AGROH133_06916" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173902" misc_feature 1788164..1788178 /gene="tyrS" /locus_tag="AGROH133_06916" /note="KMSKS motif; other site" /db_xref="CDD:173902" misc_feature 1788521..1788700 /gene="tyrS" /locus_tag="AGROH133_06916" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature order(1788545..1788550,1788554..1788559,1788563..1788568, 1788575..1788580,1788584..1788586,1788605..1788628, 1788632..1788634) /gene="tyrS" /locus_tag="AGROH133_06916" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" gene complement(1788758..1792141) /locus_tag="AGROH133_06917" /db_xref="GeneID:10267568" CDS complement(1788758..1792141) /locus_tag="AGROH133_06917" /note="Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279095.1" /db_xref="GI:325293231" /db_xref="GeneID:10267568" /translation="MAEVRGEKVKFSKRDIVALHDLPSAQAEDPLIVHCPAPRSMARA LIKIFAALFVLAFLSIGGIIVSVETGSIDNALSSQAQQALERALGPHYSARIGSSAIR FSTGLRLALVAEDVDIVEKESGQHLSRARAIGMALDPLALLTGRVSVQSLEADGMELD TALLPKGNGFDLASIRLDAVPQQLQAAFSQLDKLAQAFLSSGTEEIDISSVSIHLPPS EAGKPRVVEVRELSLTPDQQGGYSLEGETLFNGEIASLSLKTSGSGGVIDGFDARIDG FDIGPFLEKFDPEGNLHEGLNVKTGVSILARRSMPGHEPRLEISLGMGNGMLLIGGEA QPFTAGTVNARYDFQKNSLVIGNSRIDLGRTAIPVTGEITDTQEGFGLSLRIDNAVAS AEASGEDPVPFSLKADGQFNVATRQLEVPSLYVTGPLGDMAGSLKIRFGQGSPEISFA GQIPKMEATAVKQLWPFWMAHKPREWVVSNLYGGTVTNGSIAIFIPQGRMCGPGCPLV LGESEMQIRFDIDGTRLNTTGDIPPLRDVDAHFNLVGSRMNVDLKNATSYFASNRSLA LEDSRFSMSDVYAKPLLGNLDLNVSGSADAVAELATLKPINALKDTQFKPDDFTGDVT ANAKLTVGMLSSQNPPPPVWTADLDLKNLSLTKPFAGRKVTALDGFMSINDRQLKLEG KGRVDDVPMSIEMTEPVRKNSDVAPTLSLKATLNETQVAKLAPELSTVLGGTTVVEID GADTKSQEIQLDLAKASIILPGLGWSKGVGIPAKATFTLETSDGRTTISDFSLTGDGF GAAGDVTFTKNGLISADLSRVQLSPSDNYAVAVTASKNGYSINASGKSADLRPFLSKL RSSSGAGDGTSRSQPSLAIKAQLDKVYGFNDEILSNVSADVSVRDGKVRSVDFRGVTG RGQAVVAQTTNRGATGTVTLTSSDAGSLARFTNIYTRIRGGLLNLALSTVNGSDWSGS LDLRNFAVVNEAKLQDIVATPTGDDGRSLNTAVRRNIDVSSEKFQRGFARLVYVNGSV AVENGVVRGEQIGATFQGLLKDQNGRMDMTGTFMPAYGLNRLFGELPFIGIFLGNGRD RGLLGITFKLSGQTDQPKLTINPLSLIAPGVFRQIFEFQ" misc_feature complement(<1791503..1792021) /locus_tag="AGROH133_06917" /note="AsmA family; Region: AsmA; pfam05170" /db_xref="CDD:147383" misc_feature complement(<1789526..>1791061) /locus_tag="AGROH133_06917" /note="TIGR02099 family protein; Region: TIGR02099" /db_xref="CDD:162702" gene 1792260..1792727 /gene="bcp" /locus_tag="AGROH133_06919" /db_xref="GeneID:10267569" CDS 1792260..1792727 /gene="bcp" /locus_tag="AGROH133_06919" /EC_number="1.11.1.15" /note="Thioredoxin-like fold; Peroxiredoxin" /codon_start=1 /transl_table=11 /product="bacterioferritin comigratory protein" /protein_id="YP_004279096.1" /db_xref="GI:325293232" /db_xref="GeneID:10267569" /translation="MTELTIGSPAPDFTLPRNGEGTVTLSGLRGKAVVLYFYPKDDTS GCTAEAIDFSALGAEFEAANTVVIGISPDSVKSHDKFAAKHKLSVMLAADEERKALEA YGVWKEKSMYGKKYMGVERTTVLVAPDGTIAEIWNKVKVPGHAQAVLDAARKL" misc_feature 1792284..1792709 /gene="bcp" /locus_tag="AGROH133_06919" /note="Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by...; Region: PRX_BCP; cd03017" /db_xref="CDD:48566" misc_feature order(1792386..1792388,1792395..1792397,1792620..1792622) /gene="bcp" /locus_tag="AGROH133_06919" /note="catalytic triad [active]" /db_xref="CDD:48566" gene 1792742..1793572 /locus_tag="AGROH133_06920" /db_xref="GeneID:10267570" CDS 1792742..1793572 /locus_tag="AGROH133_06920" /note="Protein of unknown function (DUF455); Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279097.1" /db_xref="GI:325293233" /db_xref="GeneID:10267570" /translation="MPPTFRIISLRGGATEAIACADLDRKTALAQETATRWFERRLSL RSPLDPPLPERPGRPDKPELVPPTAVERRSLHSVKGRIALLHAIAHIELNAVDLALDI VARYASEPVPHSFFNGWMQVAFEEAKHFRMVRERLQNLGADYGDLPAHDGLWQAAHST RNDLTARLAVVPLILEARGLDVTPSLQAKMRETGDLESAAVLDVIYNDEKGHVAIGAK WFRFLCAREKKDPAATFRQLVRANFRGPLKPPFNDLARAEAGLTPSFYRSLTAVSNSG " misc_feature 1792988..1793401 /locus_tag="AGROH133_06920" /note="Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cd00657" /db_xref="CDD:153097" misc_feature order(1793015..1793017,1793117..1793119,1793126..1793128, 1793267..1793269,1793366..1793368,1793375..1793377) /locus_tag="AGROH133_06920" /note="dinuclear metal binding motif [ion binding]; other site" /db_xref="CDD:153097" gene 1793662..1794978 /locus_tag="AGROH133_06921" /db_xref="GeneID:10267571" CDS 1793662..1794978 /locus_tag="AGROH133_06921" /note="Peptidase family M23; Membrane proteins related to metalloendopeptidases" /codon_start=1 /transl_table=11 /product="membrane protein associated metalloendopeptidase" /protein_id="YP_004279098.1" /db_xref="GI:325293234" /db_xref="GeneID:10267571" /translation="MTDTAENRVFGKKRQQHVLVLASGDKVRHMTIRPWMTALAGCTI GLFSLGYLGATGYLILRDDLIGATMARQTRMQHDYEDRIAALRAQVDRVTSRQLFDQQ VVEKKVEKLLQQQAALTSRHGRMSELLERAENSGIAASTATAPIPTAPSSLSNAMAPE KRADLTGGLSAIENLMAPRPSQPEKPAGTDKRASYVPENGETPSDRADRVFSKVTLSL KDIERQQISRIARLTSDAEDKASAMQDIIRQAGLKIDESDTDGVGGPYADPQGNETDP FNMSLTNLDNALNRLDIVKETATALPFGNPAPGRAITSRFGNRLDPFLGRPALHTGID FRAETGADVKATGAGKVTVAENSGGYGNMVEIDHGQGVSTRFGHLSTILVKAGDKVEA GDIVGRAGSTGRSTGPHVHYEVRRNDTPVDPMRFLVAGAELKTYLK" misc_feature <1794355..1794942 /locus_tag="AGROH133_06921" /note="Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739" /db_xref="CDD:31082" misc_feature 1794649..1794930 /locus_tag="AGROH133_06921" /note="Peptidase family M23; Region: Peptidase_M23; pfam01551" /db_xref="CDD:190031" gene 1795111..1796712 /gene="rhlE" /locus_tag="AGROH133_06923" /db_xref="GeneID:10267572" CDS 1795111..1796712 /gene="rhlE" /locus_tag="AGROH133_06923" /EC_number="3.6.1.-" /note="DEAD-like helicase, N-terminal; Superfamily II DNA and RNA helicases" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase" /protein_id="YP_004279099.1" /db_xref="GI:325293235" /db_xref="GeneID:10267572" /translation="MGISPRQVFASVAAARRYSYRTRTEKVLPLTTFSDLGLSQKVLS AIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARM PRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLICTP GRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSATMP PEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAEEAEL KNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASD VAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIE KLITEKVEWLNGDLSSLPAPMESFESNTGRRGTKERGGRGRDRNRRDAPASPVENINQ GAQSTTVDTDIAAHGEDKVKAERRPEKTPRNSERNSRNLNPLHANDDNRDRRRHYRDH DDGPTPVGFGDDIPAFMLIVANAKG" misc_feature 1795201..1796349 /gene="rhlE" /locus_tag="AGROH133_06923" /note="ATP-dependent RNA helicase RhlB; Provisional; Region: PRK04837" /db_xref="CDD:179884" misc_feature 1795207..1795818 /gene="rhlE" /locus_tag="AGROH133_06923" /note="DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (...; Region: DEADc; cd00268" /db_xref="CDD:28928" misc_feature 1795342..1795356 /gene="rhlE" /locus_tag="AGROH133_06923" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28928" misc_feature 1795657..1795668 /gene="rhlE" /locus_tag="AGROH133_06923" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:28928" misc_feature 1795750..1795758 /gene="rhlE" /locus_tag="AGROH133_06923" /note="motif III; other site" /db_xref="CDD:28928" misc_feature 1795876..1796247 /gene="rhlE" /locus_tag="AGROH133_06923" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(1795960..1795971,1796029..1796034,1796107..1796115) /gene="rhlE" /locus_tag="AGROH133_06923" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(1796131..1796133,1796194..1796196,1796206..1796208, 1796215..1796217) /gene="rhlE" /locus_tag="AGROH133_06923" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene 1796745..1797164 /locus_tag="AGROH133_06924" /db_xref="GeneID:10267573" CDS 1796745..1797164 /locus_tag="AGROH133_06924" /note="NUDIX domain; ADP-ribose pyrophosphatase" /codon_start=1 /transl_table=11 /product="mutT like protein" /protein_id="YP_004279100.1" /db_xref="GI:325293236" /db_xref="GeneID:10267573" /translation="MTPTIKPGQDFPGVGVGLAILRDGRLLLCRRLKAPEAGYWNIPG GKVDHLESALAAARREAEEETGLTIGKVEFLCHSEYINVADRHHWVSLIFVTRDTQGE PVLTEPDKLSDIGWFDPDNLPEPISAFAKDALAALTK" misc_feature 1796778..1797149 /locus_tag="AGROH133_06924" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or...; Region: Nudix_Hydrolase; cl00447" /db_xref="CDD:189099" misc_feature order(1796877..1796885,1796913..1796939) /locus_tag="AGROH133_06924" /note="nudix motif; other site" /db_xref="CDD:72880" gene 1797289..1797414 /locus_tag="AGROH133_06925" /db_xref="GeneID:10267574" CDS 1797289..1797414 /locus_tag="AGROH133_06925" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279101.1" /db_xref="GI:325293237" /db_xref="GeneID:10267574" /translation="MLSENPMLEEYLFAKLFECNLKLLKLASHKKPPRLPEAVYT" gene 1798049..1799128 /locus_tag="AGROH133_06926" /db_xref="GeneID:10267575" CDS 1798049..1799128 /locus_tag="AGROH133_06926" /note="Extracellular ligand-binding receptor; ABC-type branched-chain amino acid transport systems, periplasmic component" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter substrate-binding protein" /protein_id="YP_004279102.1" /db_xref="GI:325293238" /db_xref="GeneID:10267575" /translation="MLSLRLLTIIAGFAFAGSACAASIGIVAPQNGPYELLGQQVRQG AKAAAAKLGLDVVEIHESCEDGSGGAIADGLVAAKVSAAIGFLCTETLQGVLPPLKSA AIPAITLSSRAPILMEDALKYSWPLFRLAPSDKAESDRAAEIILRDWKGHSIGLVDDG TIFSRDLIDRIRSALEENGLKPTLTDTLRPAQEQQVALVRRLGRTGITHVFIGAERND VAIVARDAGSENIPLTIMSGDAMNAANNPVPLAANVLAVTRPAYDTLPSAQAVAGELR AANIEPEGYVLPSYAAAELTAALAEAAQSQGKPAPEILANGTVFKTVLGDIAFNPSHE LADNPYRLQRWNGQRFEQADKAERQ" misc_feature 1798133..1799092 /locus_tag="AGROH133_06926" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature 1798133..>1798771 /locus_tag="AGROH133_06926" /note="Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily; Region: PBP1_ABC_transporter_LIVBP_like; cd06268" /db_xref="CDD:107263" misc_feature 1798376..1798381 /locus_tag="AGROH133_06926" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107263" gene 1799261..1799938 /gene="rpe" /locus_tag="AGROH133_06929" /db_xref="GeneID:10267576" CDS 1799261..1799938 /gene="rpe" /locus_tag="AGROH133_06929" /EC_number="5.1.3.1" /note="Pentose-5-phosphate-3-epimerase" /codon_start=1 /transl_table=11 /product="ribulose-phosphate 3-epimerase" /protein_id="YP_004279103.1" /db_xref="GI:325293239" /db_xref="GeneID:10267576" /translation="MSLPIRIAPSILASNFAKLGQEVADVTEAGADWIHLDVMDGHFV PNISFGPDVIKALRPHSNAFFDCHLMIAPVDPYLEAFAKAGCDGITVHAEAGPHLHRS LQTIRTLGRKAGVTLNPATPLSVIENVLDDVDLVLIMSVNPGFGGQKFIPAMLDKIRA AKAMIGDRPIELEVDGGVTAETAGAIVAAGANALVAGSAVFKGDGVADYRKTVSLLRS VSEAARS" misc_feature 1799270..1799929 /gene="rpe" /locus_tag="AGROH133_06929" /note="Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Region: Rpe; COG0036" /db_xref="CDD:30385" misc_feature 1799276..1799911 /gene="rpe" /locus_tag="AGROH133_06929" /note="Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative...; Region: RPE; cd00429" /db_xref="CDD:73366" misc_feature order(1799288..1799290,1799294..1799296,1799369..1799371, 1799468..1799470,1799687..1799692,1799696..1799701, 1799783..1799785,1799789..1799791,1799849..1799854) /gene="rpe" /locus_tag="AGROH133_06929" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73366" misc_feature order(1799309..1799311,1799318..1799320,1799378..1799380, 1799384..1799389,1799393..1799395,1799399..1799410, 1799477..1799479,1799489..1799491,1799552..1799554, 1799558..1799563,1799615..1799617,1799624..1799626, 1799630..1799632,1799642..1799644,1799684..1799686, 1799711..1799713,1799717..1799719,1799729..1799731) /gene="rpe" /locus_tag="AGROH133_06929" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:73366" misc_feature order(1799363..1799365,1799369..1799371,1799462..1799464, 1799783..1799785) /gene="rpe" /locus_tag="AGROH133_06929" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:73366" gene 1800000..1800536 /locus_tag="AGROH133_06930" /db_xref="GeneID:10267577" CDS 1800000..1800536 /locus_tag="AGROH133_06930" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279104.1" /db_xref="GI:325293240" /db_xref="GeneID:10267577" /translation="MNSDRRNFHDVIPAALFSLLAPLVWAAISAATATLGLYLRNRLE TDHAADIAVLFFFGGLLGWPLAMVALRFLPASTSLPLRFAASCLAIAFFTIAVAAAFF ALQYRIFYAQWHAPAFSRIWFFQQFFTSLGAIYQFCILGLGLYFPFAAIPLALAGAIL CRRAHRAPRVRSDVHRTL" gene 1800644..1801951 /gene="purB" /locus_tag="AGROH133_06937" /db_xref="GeneID:10267578" CDS 1800644..1801951 /gene="purB" /locus_tag="AGROH133_06937" /EC_number="4.3.2.2" /note="Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide" /codon_start=1 /transl_table=11 /product="Adenylosuccinate lyase" /protein_id="YP_004279105.1" /db_xref="GI:325293241" /db_xref="GeneID:10267578" /translation="MIPRYSRPEMVAIWSPETKFRIWFEIEAHACDALAELGVIPKSA AQTIWEKGGSATFDVARIDEIEAVTKHDVIAFLTHLAEFVGPDSRFIHQGMTSSDVLD TTLNIQLVRAADLLLADMDRVLAALKTRAFEHKNTVRIGRSHGIHAEPTTMGLTFARF YTEMHRNRERLVNARAEIATGAISGAVGTFANIDPRVEEHVCAKLGLVPEPVSTQVIP RDRHAMFFAILGVIASSIENVAIEIRHMQRTEVLEAEEFFSPGQKGSSAMPHKRNPVL TENLTGLARLVRMSVVPALENVALWHERDISHSSVERAIGPDTTVTLDFALNRLAGVI EKLVIYPDNMLKNMNKFRGLVHSQRVLLALTQAGVSREDAYRLVQRNAMRVWEQGADF LEELLGDEEVRAALPESVIREKFDLGYHTKHVDTIFARVFGNS" misc_feature 1800644..1801948 /gene="purB" /locus_tag="AGROH133_06937" /note="adenylosuccinate lyase; Provisional; Region: PRK07492" /db_xref="CDD:181000" misc_feature 1800653..1801933 /gene="purB" /locus_tag="AGROH133_06937" /note="Adenylsuccinate lyase (ASL)_subgroup 1; Region: Adenylsuccinate_lyase_1; cd01360" /db_xref="CDD:176464" misc_feature order(1800686..1800691,1800857..1800859,1800884..1800886, 1800911..1800916,1800920..1800925,1801067..1801084, 1801088..1801090,1801106..1801111,1801118..1801120, 1801127..1801132,1801148..1801153,1801169..1801171, 1801199..1801210,1801217..1801219,1801223..1801225, 1801271..1801273,1801277..1801282,1801301..1801303, 1801313..1801315,1801334..1801336,1801355..1801357, 1801367..1801369,1801373..1801378,1801382..1801387, 1801457..1801462,1801475..1801477,1801487..1801489, 1801496..1801501,1801505..1801510,1801517..1801522, 1801529..1801537,1801541..1801564,1801571..1801576, 1801580..1801585,1801595..1801597,1801715..1801717, 1801727..1801729,1801736..1801741,1801754..1801759, 1801904..1801906,1801910..1801912,1801922..1801924) /gene="purB" /locus_tag="AGROH133_06937" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176464" misc_feature order(1800854..1800856,1800917..1800919,1801073..1801075, 1801286..1801288,1801454..1801456,1801460..1801462, 1801475..1801477) /gene="purB" /locus_tag="AGROH133_06937" /note="active site" /db_xref="CDD:176464" gene 1802021..1802584 /locus_tag="AGROH133_06938" /db_xref="GeneID:10267579" CDS 1802021..1802584 /locus_tag="AGROH133_06938" /note="Alpha/Beta hydrolase family of unknown function (DUF1234); Predicted esterase of the alpha/beta hydrolase fold" /codon_start=1 /transl_table=11 /product="esterase of the alpha/beta hydrolase fold protein" /protein_id="YP_004279106.1" /db_xref="GI:325293242" /db_xref="GeneID:10267579" /translation="MKVSEADILIVPGYTNSGPDHWQTRWERKLSTARRVEQAEWSKP VKEDWIARLVEEVNASTKPVVIVAHSLGVPTVIHALPEIGKKVAGALLVAPPDVANPD IRPKHLMTFGPYPRDPLPFPAITIASRNDPFGSYEHADDIAAAWGAMLVDAGMSGHIN AESGHGPWPEGGMVFAQFLSRLKVNEP" misc_feature 1802042..1802551 /locus_tag="AGROH133_06938" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 1802768..1803532 /gene="purC" /locus_tag="AGROH133_06939" /db_xref="GeneID:10267580" CDS 1802768..1803532 /gene="purC" /locus_tag="AGROH133_06939" /EC_number="6.3.2.6" /note="catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole- succinocarboxamidesynthase" /protein_id="YP_004279107.1" /db_xref="GI:325293243" /db_xref="GeneID:10267580" /translation="MNRRRRIYEGKAKILYEGPEPGTLIQFFKDDATAFNKKKHEVID GKGVLNNRICEYVFTHLNKIGIPTHFIRRLNMREQLIKEVEMIPLEIVVRNVAAGSLS KRLGIDEGVVLPRSIIEFYYKSDELEDPMVSEEHITAFGWANPAELDDIMALAIRVND FLSGLFLGVGIQLVDFKIECGRLFEGDMMRIILADEISPDSCRLWDIETQKKMDKDLF RRDMGGLVEAYSEVARRLGIINENEPIRGTGPVLVK" misc_feature 1802768..1803490 /gene="purC" /locus_tag="AGROH133_06939" /note="phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed; Region: PRK09362" /db_xref="CDD:181800" misc_feature 1802786..1803481 /gene="purC" /locus_tag="AGROH133_06939" /note="bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415" /db_xref="CDD:133470" misc_feature order(1802786..1802791,1802795..1802800,1802804..1802806, 1802810..1802815,1802837..1802839,1802843..1802845, 1802972..1802974,1803011..1803013,1803017..1803019, 1803023..1803025,1803134..1803136,1803302..1803304, 1803347..1803352) /gene="purC" /locus_tag="AGROH133_06939" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:133470" misc_feature order(1802789..1802791,1802795..1802806,1802810..1802812, 1802837..1802839,1802873..1802875,1802975..1802977, 1803008..1803019,1803023..1803025,1803035..1803037, 1803041..1803043,1803047..1803049,1803059..1803067, 1803128..1803130,1803134..1803136,1803152..1803154, 1803290..1803298,1803302..1803304,1803350..1803352, 1803365..1803376) /gene="purC" /locus_tag="AGROH133_06939" /note="active site" /db_xref="CDD:133470" misc_feature order(1802873..1802875,1803035..1803037,1803041..1803043, 1803047..1803049,1803059..1803067,1803128..1803130, 1803152..1803154,1803290..1803298,1803365..1803376) /gene="purC" /locus_tag="AGROH133_06939" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133470" gene 1803588..1803830 /gene="purS" /locus_tag="AGROH133_06940" /db_xref="GeneID:10267581" CDS 1803588..1803830 /gene="purS" /locus_tag="AGROH133_06940" /note="With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase subunit PurS" /protein_id="YP_004279108.1" /db_xref="GI:325293244" /db_xref="GeneID:10267581" /translation="MIKARVTVTLKNGVLDPQGKAIEGALGSLGFGGVGHVRQGKVFD LELEGADKAKAETDLKAMCEKLLANTVIENYSIAIL" misc_feature 1803591..1803824 /gene="purS" /locus_tag="AGROH133_06940" /note="Phosphoribosylformylglycinamidine (FGAM) synthase; Region: PurS; cl00789" /db_xref="CDD:186189" gene 1803851..1804522 /gene="purQ" /locus_tag="AGROH133_06941" /db_xref="GeneID:10267582" CDS 1803851..1804522 /gene="purQ" /locus_tag="AGROH133_06941" /EC_number="6.3.5.3" /note="catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase I" /protein_id="YP_004279109.1" /db_xref="GI:325293245" /db_xref="GeneID:10267582" /translation="MKSAVVQLPGLNRDRDMIAALTKISGKAPVTIWQTETTIPDVDL IVIPGGFSYGDYLRCGAIAARMPVMQAIREKAEQGVKVLGVCNGFQILVEAGMLPGAL MRNASLKFVCREVKLEVVNNDTEFTRAYDKGQVLRCPVAHHDGNYFLDTDELKSVEDN GQVVFRYADGTNPNGSLNDIAGVINAKGNVLGMMPHPENLIEAAHGGNDGRGLFASAL GVIAA" misc_feature 1803860..1804504 /gene="purQ" /locus_tag="AGROH133_06941" /note="Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase; Region: GATase1_FGAR_AT; cd01740" /db_xref="CDD:153211" misc_feature order(1803998..1804003,1804013..1804015,1804106..1804108, 1804118..1804120,1804271..1804276,1804430..1804432, 1804436..1804447) /gene="purQ" /locus_tag="AGROH133_06941" /note="putative active site [active]" /db_xref="CDD:153211" misc_feature order(1804106..1804108,1804436..1804438,1804442..1804444) /gene="purQ" /locus_tag="AGROH133_06941" /note="catalytic triad [active]" /db_xref="CDD:153211" gene 1804606..1805013 /locus_tag="AGROH133_06942" /db_xref="GeneID:10267583" CDS 1804606..1805013 /locus_tag="AGROH133_06942" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279110.1" /db_xref="GI:325293246" /db_xref="GeneID:10267583" /translation="MNRLLRSHAPKAAGLLLAAAALAACQPKPQPASSSASRAALPTM ERIALGANACWFKSGDPAFKAYRLAPELNSFSGRPRILLVPRNSPESRPMLVIQAEGN PAKLDAFGPVMNEAISGRIATDVKRWANGGKGC" gene complement(1805146..1805451) /locus_tag="AGROH133_06944" /db_xref="GeneID:10267584" CDS complement(1805146..1805451) /locus_tag="AGROH133_06944" /note="Uncharacterized conserved small protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279111.1" /db_xref="GI:325293247" /db_xref="GeneID:10267584" /translation="MRKMDQYLSTADTLYPDGYERERVFRDTGDMVAPSPFPARIAHT LIGRLIAGLSNWHGKRQGRLALRELSDDLLDDIGVTRDEALKEAARSQLFSWPSRPL" misc_feature complement(1805179..1805382) /locus_tag="AGROH133_06944" /note="Domain of unknown function (DUF1127); Region: DUF1127; cl02276" /db_xref="CDD:154833" gene 1805545..1806963 /locus_tag="AGROH133_06945" /db_xref="GeneID:10267585" CDS 1805545..1806963 /locus_tag="AGROH133_06945" /note="Bacterial regulatory proteins, gntR family; Transcriptional regulators containing a DNA- binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004279112.1" /db_xref="GI:325293248" /db_xref="GeneID:10267585" /translation="MTNWLPDITEGNGPIYLRLADKIEGAISDGILQAGSKLPPQRNL AFDLGVTIGTISRAYALIHERGLVSGEVGRGTYVNERKAAAPLSRVEPTASAFGGTRY AVDTSAEFRLNTTAAPDVGQSALVSKHVEAVTREHPFEISNYTRSFPDNWCMAGVRWL SQNGWSPKPENIVSTLGAHAAVMSVVTAMTAPGDRIVFEPLTYSHISRSAALAGRRVT LVEVDEKGIIPDDFERVCAQQHPKMIFLMSAGQNPTCATLPEERRRAIADIARRYGVW IVEDNLYGAMTRDAIPLIAEFAPDLTFVVGGLSKSVSAGVRGGWVACPAQFASRIRIS HSMITGGLPFMLAELNARLVNSGDADDIRKDCIAEINQREALARRIFAGLEFNSLPDI AFLWLRLPEPWLSGTFRSAAMKEGVLIDDEDEFKAGRTEKVYHRVRISLSGPSNQEEL KHALGILRHLLDNGSAGYESEA" misc_feature 1805575..1806942 /locus_tag="AGROH133_06945" /note="Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:31361" misc_feature 1805584..1805781 /locus_tag="AGROH133_06945" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(1805584..1805586,1805590..1805592,1805659..1805661, 1805665..1805670,1805692..1805706,1805710..1805715, 1805722..1805724,1805752..1805757,1805761..1805772) /locus_tag="AGROH133_06945" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 1806007..1806918 /locus_tag="AGROH133_06945" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature order(1806073..1806081,1806151..1806153,1806298..1806300, 1806391..1806393,1806463..1806465,1806469..1806474, 1806493..1806495) /locus_tag="AGROH133_06945" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(1806082..1806084,1806181..1806183,1806370..1806372, 1806487..1806495,1806580..1806582,1806589..1806591) /locus_tag="AGROH133_06945" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 1806472..1806474 /locus_tag="AGROH133_06945" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 1807071..1807661 /locus_tag="AGROH133_06947" /db_xref="GeneID:10267586" CDS 1807071..1807661 /locus_tag="AGROH133_06947" /note="Lipid A 3-O-deacylase (PagL)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279113.1" /db_xref="GI:325293249" /db_xref="GeneID:10267586" /translation="MAAFSSISARAFIALAMVFAAYVLGDMTPAAAADGTVFDELRFG VTTSLADRNGGGEDGVFPAFTAYFDPFASASAVTFGEKLARPRLHLGAEIGTEGEANT IYGGINWTFDLNPKIFVDLGFGGLWHDGRLRNGPGETGAEFGCRVLFHEYAAIGYRFN SNWNISTQIEHASHANLCDGPNDGLTRVGLMVGYKF" misc_feature 1807230..1807658 /locus_tag="AGROH133_06947" /note="Lipid A 3-O-deacylase (PagL); Region: PagL; pfam09411" /db_xref="CDD:150172" gene 1807776..1810010 /gene="purL" /locus_tag="AGROH133_06950" /db_xref="GeneID:10267587" CDS 1807776..1810010 /gene="purL" /locus_tag="AGROH133_06950" /EC_number="6.3.5.3" /note="catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase II" /protein_id="YP_004279114.1" /db_xref="GI:325293250" /db_xref="GeneID:10267587" /translation="MSIPNSIKITPELVASHGLKPDEYQRILDLIGREPSFTELGIFS AMWNEHCSYKSSKKWLKTLPTTGPRVIQGPGENAGVVDIDDGDCVVFKMESHNHPSYI EPYQGAATGVGGILRDVFTMGARPIAAMNALRFGAPDHPKTRHLVAGVVAGVGGYGNS FGVPTVGGEVEFDPRYNGNILVNAFAAGLAKSDAIFLSEAKGVGLPVVYLGAKTGRDG VGGATMASAEFDESIEEKRPTVQVGDPFTEKCLLEACLELMKTGAVIAIQDMGAAGLT CSAVEMGAKGDLGIELDLNAVPVREERMTAYEMMLSESQERMLMVLEPSKEEVAKAIF VKWGLDFAIVGKTTDDLRFRVLHNGEEVANLPIKDLGDQAPEYDRPWTPAKVQAPLAE NDVPDADIADALVSLVGSANNSSRRWVYEQYDTLIQGNSLQLPGGDAGVVRVEGHDKK ALAFSSDVTPRYVEADAFEGGKQAVAECWRNITATGALPLAATDNLNFGNPEKPEIMS QLVHAIKGIGEACRVLEFPIVSGNVSLYNETNGQAILPTPTIGGVGLLKDWGRMARIR FAAADEVVLLAGAPAGLGTHIAQSVYMRDVHGRIDGPAPHVDLEAEKRNGDFVRALIA DGLATAVHDCSSGGLALAVAEMAISSGIGATIDAVEGHNPVLTFYGEDQGRYVLTVKK SDLDEVRAAAKAAGVSCPAIGVTGGSSVKLGTARAIEIKELHLAYESWFPQFMDGETL IAAE" misc_feature 1807797..1809986 /gene="purL" /locus_tag="AGROH133_06950" /note="phosphoribosylformylglycinamidine synthase II; Provisional; Region: PRK01213" /db_xref="CDD:179249" misc_feature 1807890..1808870 /gene="purL" /locus_tag="AGROH133_06950" /note="PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP...; Region: PurL_repeat1; cd02203" /db_xref="CDD:100034" misc_feature order(1808037..1808048,1808052..1808054,1808127..1808129, 1808157..1808159,1808166..1808168,1808175..1808177, 1808280..1808282,1808313..1808318,1808328..1808330) /gene="purL" /locus_tag="AGROH133_06950" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100034" misc_feature order(1808115..1808117,1808127..1808129,1808274..1808282) /gene="purL" /locus_tag="AGROH133_06950" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:100034" misc_feature 1809087..1809890 /gene="purL" /locus_tag="AGROH133_06950" /note="PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP...; Region: PurL_repeat2; cd02204" /db_xref="CDD:100035" misc_feature order(1809126..1809137,1809141..1809143,1809216..1809218, 1809252..1809254,1809261..1809263,1809270..1809272, 1809369..1809371,1809411..1809416,1809426..1809428) /gene="purL" /locus_tag="AGROH133_06950" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100035" misc_feature order(1809204..1809206,1809216..1809218,1809363..1809371) /gene="purL" /locus_tag="AGROH133_06950" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:100035" gene 1810027..1810260 /locus_tag="AGROH133_06951" /db_xref="GeneID:10267588" CDS 1810027..1810260 /locus_tag="AGROH133_06951" /note="BolA-like protein; Stress-induced morphogen (activity unknown)" /codon_start=1 /transl_table=11 /product="BolA/YrbA family protein" /protein_id="YP_004279115.1" /db_xref="GI:325293251" /db_xref="GeneID:10267588" /translation="MPMKPGDIEDMIKAGIPGAKVTIRDLAGDGDHYAAEVVADAFKG KTRVQQHQMVYDALKGNMGGVLHALALQTSAPE" misc_feature 1810027..1810257 /locus_tag="AGROH133_06951" /note="BolA-like protein; Region: BolA; cl00386" /db_xref="CDD:185958" gene complement(1810397..1811545) /locus_tag="AGROH133_06952" /db_xref="GeneID:10267589" CDS complement(1810397..1811545) /locus_tag="AGROH133_06952" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279116.1" /db_xref="GI:325293252" /db_xref="GeneID:10267589" /translation="MPTVKSRLVLYFPGFDPLDAAAHHLRYQRAAALAGKTWDVNYAV GALENSPAGETFTVEASAGDWRTRSTIFVYDHNAVISRLRDAPLWRQIALGFAAAAGI VAEGGAGRYLRHAWRFGLFFIFPFLLMLVGGALAAGIALSPWLFGLPLWLLAISLPAA ALFFVKAFLPFAERFHTLHLYADWRFALAVGRDEPIARNWIEEKAALVLKALEQPSEE VLVVSHSMGASLALAVIGRVLELRPDALDGRKLSFATLGGAALQCALLSSADRLRQSA GVIARHPEVTWFDIQCLTDPIHLYRCNTVALTGHKDAPQPKIVPIRFKHSLSPDRYKK NKRNFLRMHRQYVLGPDRKSGYDFTLLTAGPLPAASFADLESQQPPVL" gene 1811655..1811906 /locus_tag="AGROH133_06955" /db_xref="GeneID:10267590" CDS 1811655..1811906 /locus_tag="AGROH133_06955" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279117.1" /db_xref="GI:325293253" /db_xref="GeneID:10267590" /translation="MSGIVDQLLNGVVKGALSEVLAKTGLRKTRRIRRRTKSNTSLAG GIVGSVLEAAIKAAVKPKPAKKQVSKRRTAAARSRQRLR" gene 1812472..1812807 /gene="grlA" /locus_tag="AGROH133_06956" /db_xref="GeneID:10267591" CDS 1812472..1812807 /gene="grlA" /locus_tag="AGROH133_06956" /note="Monothiol glutaredoxin" /codon_start=1 /transl_table=11 /product="Glutaredoxin-related protein" /protein_id="YP_004279118.1" /db_xref="GI:325293254" /db_xref="GeneID:10267591" /translation="MSGIHDMIDSEVKSNDIVLFMKGTPQFPQCGFSGQVVQILDYLG VDYKGVNVLADADIRQGIKDYSNWPTIPQLYVKGEFVGGCDIVREMFQSGELQNHFQE QGISVRGAA" misc_feature 1812493..1812762 /gene="grlA" /locus_tag="AGROH133_06956" /note="Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain...; Region: GRX_PICOT_like; cd03028" /db_xref="CDD:48577" misc_feature order(1812535..1812537,1812559..1812567,1812679..1812684) /gene="grlA" /locus_tag="AGROH133_06956" /note="putative GSH binding site [chemical binding]; other site" /db_xref="CDD:48577" misc_feature order(1812559..1812561,1812568..1812570) /gene="grlA" /locus_tag="AGROH133_06956" /note="catalytic residues [active]" /db_xref="CDD:48577" gene 1812904..1814154 /locus_tag="AGROH133_06957" /db_xref="GeneID:10267592" CDS 1812904..1814154 /locus_tag="AGROH133_06957" /note="Drug resistance transporter Bcr/CflA subfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="bicyclomycin resistance protein" /protein_id="YP_004279119.1" /db_xref="GI:325293255" /db_xref="GeneID:10267592" /translation="MTELSQSTTSRAVSMGRTEFIALAAMLMALNALAIDIMLPGLQE IGASLGVVNENHRQYVISSYLLGFGIAQLLYGPISDRFGRRKPMLVGLAIYIVSAIAV VFVPSFTGLLVLRFIQGIGSAATRVITISIVRDIYGGRQMAEVMSLIMMVFMVVPVIA PGTGQIVLFFGDWHLIFAFMAGIAAVVTAWMYFRLPETLHADDVRPFTVRSILGGFKI VLTNRIALCYTLSSTFIFGALFGFINSAEQVYKGIYGLGAWFAAAFAGVALFMAFSSF INARLVGRFGMRKLSHGSLLGFIAITFVWLVVQMVGPEPMPFAIFIVFFALAMFQFGW IGSNFNSLAMEPLGHVAGTASSVIGFMGTVGGSLIGAVIGQAFDGTALPMVAGFFAVS IIGLVFVLIGEKGVLFQAHNKPTH" misc_feature 1813021..1814097 /locus_tag="AGROH133_06957" /note="drug resistance transporter, Bcr/CflA subfamily; Region: efflux_Bcr_CflA; TIGR00710" /db_xref="CDD:162006" misc_feature 1813075..1814103 /locus_tag="AGROH133_06957" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(1813084..1813086,1813093..1813098,1813105..1813107, 1813117..1813122,1813126..1813131,1813267..1813272, 1813279..1813284,1813291..1813296,1813303..1813305, 1813339..1813344,1813351..1813356,1813372..1813374, 1813609..1813611,1813618..1813623,1813630..1813635, 1813642..1813644,1813684..1813686,1813696..1813698, 1813708..1813710,1813729..1813731,1813741..1813743, 1813885..1813887,1813894..1813899,1813906..1813908, 1813918..1813923,1813930..1813932,1813963..1813968, 1813975..1813980,1813987..1813992,1813999..1814001) /locus_tag="AGROH133_06957" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(1814227..1815051) /locus_tag="AGROH133_06970" /db_xref="GeneID:10267593" CDS complement(1814227..1815051) /locus_tag="AGROH133_06970" /EC_number="3.1.3.25" /note="Inositol monophosphatase family; Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family" /codon_start=1 /transl_table=11 /product="inositol monophosphatase family protein" /protein_id="YP_004279120.1" /db_xref="GI:325293256" /db_xref="GeneID:10267593" /translation="MAIELDIASLANALQEAAAVEILPRFRNLGEGDVRIKSEAIDLV TEADEAAERLIRARVQEIMPQALFIGEEAVAADASLLGKLADADLAVVVDPIDGTYNF ASGLPLFGVMMSVISKGETVAGLIFDPMGNDWAIAEKGSGAWLCAADGSQTQMSVVPA PALSQMVGIANTGYFDVETRRKILMNLADVRLFTSYRCAAHEYRVFCGGHMHFLMYNK LMPWDHLAGTLLSQEAGAYAARFDGSPYLPRHLEGGLLLAPDQETWELLREKIFTV" misc_feature complement(1814245..1814991) /locus_tag="AGROH133_06970" /note="PAP-phosphatase_like domains. PAP-phosphatase is a member of the inositol monophosphatase family, and catalyses the hydrolysis of 3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In Saccharomyces cerevisiae, HAL2 (MET22) is involved in methionine...; Region: PAP_phosphatase; cd01517" /db_xref="CDD:73273" misc_feature complement(order(1814383..1814388,1814455..1814457, 1814530..1814532,1814752..1814757,1814761..1814772, 1814836..1814841,1814908..1814910,1814926..1814928)) /locus_tag="AGROH133_06970" /note="active site" /db_xref="CDD:73273" misc_feature complement(order(1814383..1814385,1814770..1814772)) /locus_tag="AGROH133_06970" /note="putative lithium-binding site [ion binding]; other site" /db_xref="CDD:73273" misc_feature complement(order(1814383..1814385,1814395..1814397, 1814446..1814448,1814530..1814532)) /locus_tag="AGROH133_06970" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73273" gene complement(1815082..1815909) /locus_tag="AGROH133_06971" /db_xref="GeneID:10267594" CDS complement(1815082..1815909) /locus_tag="AGROH133_06971" /EC_number="3.1.3.25" /note="Inositol monophosphatase family; Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family" /codon_start=1 /transl_table=11 /product="inositol monophosphatase family protein" /protein_id="YP_004279121.1" /db_xref="GI:325293257" /db_xref="GeneID:10267594" /translation="MTLSDKDIDFLISTVAAAGRQEIMPRFRNLDAGAISEKTSAVDL VTEADILTEKAITAALLQRFPKAHIVGEEAYDADQSVIPALADAPFAFVIDPIDGTFN YASGFPAFGTLLAVTVKGETVAGIIHDPVMGDTILALKGEGAYLHRKDGSQARLKVAD PVPLSEMVGIFSWGHSHEDRRPVIAANMAKIKMALSINCSAHEYWLASTGKLHFIGHE KLMPWDHLAGVLIHHEAGGYTARFDNTPYRPGQTTGGILSAPDKESWKMLRREIVAL" misc_feature complement(1815100..1815888) /locus_tag="AGROH133_06971" /note="PAP-phosphatase_like domains. PAP-phosphatase is a member of the inositol monophosphatase family, and catalyses the hydrolysis of 3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In Saccharomyces cerevisiae, HAL2 (MET22) is involved in methionine...; Region: PAP_phosphatase; cd01517" /db_xref="CDD:73273" misc_feature complement(order(1815238..1815243,1815379..1815381, 1815607..1815612,1815616..1815627,1815691..1815696, 1815763..1815765,1815781..1815783)) /locus_tag="AGROH133_06971" /note="active site" /db_xref="CDD:73273" misc_feature complement(order(1815238..1815240,1815625..1815627)) /locus_tag="AGROH133_06971" /note="putative lithium-binding site [ion binding]; other site" /db_xref="CDD:73273" misc_feature complement(order(1815238..1815240,1815250..1815252, 1815259..1815261,1815301..1815303,1815379..1815381)) /locus_tag="AGROH133_06971" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73273" gene complement(1815926..1816891) /locus_tag="AGROH133_06972" /db_xref="GeneID:10267595" CDS complement(1815926..1816891) /locus_tag="AGROH133_06972" /note="PP-loop ATPase, YdaO-related; tRNA(Ile)-lysidine synthase MesJ" /codon_start=1 /transl_table=11 /product="PP-loop domain protein" /protein_id="YP_004279122.1" /db_xref="GI:325293258" /db_xref="GeneID:10267595" /translation="MRAFPALKMAECQSGLIMNIVTSIADEVEADQDLAGENGASHPL FDAAPRSVSFNKLRKRLLRNVRQAFGDFGMLNGQKRWLVGLSGGKDSYGLLALLLDLK WRGLLPVELIACNLDQGQPNFPKHVLPEYLAKIGVAHRIEYRDTYSVVKEKVPAGGTY CSLCSRLRRGNLYRIAREEGCDALVLGHHREDILETFFMNFFHGGRLAGMPAKLMNDE GDLMVLRPLAYCAEEDMAKFAAAMEFPIIPCDLCGSQDGLQRNAMKEMLADIERRMPG RKDVMLRALAHVNPSHLLDPKLFDFSALSVTGASPEERTEASPPL" misc_feature complement(1815971..1816741) /locus_tag="AGROH133_06972" /note="tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional; Region: PRK10696" /db_xref="CDD:182655" misc_feature complement(1816127..1816654) /locus_tag="AGROH133_06972" /note="This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This...; Region: Alpha_ANH_like_II; cd01993" /db_xref="CDD:30180" misc_feature complement(order(1816541..1816543,1816547..1816549, 1816619..1816630,1816634..1816642)) /locus_tag="AGROH133_06972" /note="Ligand Binding Site [chemical binding]; other site" /db_xref="CDD:30180" gene complement(1816904..1817833) /gene="glsA" /locus_tag="AGROH133_06973" /db_xref="GeneID:10267596" CDS complement(1816904..1817833) /gene="glsA" /locus_tag="AGROH133_06973" /EC_number="3.5.1.2" /note="catalyzes the formation of glutamate from glutamine; Glutaminase" /codon_start=1 /transl_table=11 /product="glutaminase A" /protein_id="YP_004279123.1" /db_xref="GI:325293259" /db_xref="GeneID:10267596" /translation="MQDIQAIVDSIYDSMVPRLGEGKVADYIPELAKVDPNQFGIAIT TVDGTTYTAGNALTPFSIQSISKVFMLTLALGKAGETVWNRVGREPSGSSFNSIVQLE HEHGIPRNPFVNAGAIVVTDIVLSGHQPREAIGELLRFVRYLADDDTISIDDTVAKSE QATGFRNFALANFMRSFGNLHHPVEYTLGVYFHQCALSMTCAQLSRAGLFLANRGRNP LSGHTVVSDRRARRINALMLTCGHYDGSGDFAYHVGLPGKSGVGGGIMAVAPGKASIA VWSPGLNKVGNSALGSHALEMLATKTGWSVFGA" misc_feature complement(1816913..1817833) /gene="glsA" /locus_tag="AGROH133_06973" /note="Glutaminase; Region: Glutaminase; cl00907" /db_xref="CDD:193972" gene complement(1817903..1818520) /gene="rpsD" /locus_tag="AGROH133_06974" /db_xref="GeneID:10267597" CDS complement(1817903..1818520) /gene="rpsD" /locus_tag="AGROH133_06974" /note="primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions; Ribosomal protein S4 and related proteins" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S4" /protein_id="YP_004279124.1" /db_xref="GI:325293260" /db_xref="GeneID:10267597" /translation="MSKRESAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGK MSDFGTQLRAKQKLKGYYGELREKQFRATYDEANRRKGDTSENLIGLLESRLDAIVYR AKFVPTVFASRQFINHGHVTVNGVRVNIGSYRCKPGDVIEVRQKSKQLVTVLEAVQLA ERDVPDYIEVDHNKMVATYARIPALSDVPYPVVMEPHLVVEFYSR" misc_feature complement(1817906..1818520) /gene="rpsD" /locus_tag="AGROH133_06974" /note="30S ribosomal protein S4; Validated; Region: rpsD; PRK05327" /db_xref="CDD:180018" misc_feature complement(1818242..1818517) /gene="rpsD" /locus_tag="AGROH133_06974" /note="Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163" /db_xref="CDD:143931" misc_feature complement(1818056..1818238) /gene="rpsD" /locus_tag="AGROH133_06974" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature complement(order(1818113..1818115,1818119..1818142, 1818161..1818163,1818167..1818172,1818179..1818184, 1818188..1818193,1818197..1818202,1818236..1818238)) /gene="rpsD" /locus_tag="AGROH133_06974" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" gene 1818972..1819955 /locus_tag="AGROH133_06975" /db_xref="GeneID:10267598" CDS 1818972..1819955 /locus_tag="AGROH133_06975" /note="Integral membrane protein TerC family; Membrane protein TerC, possibly involved in tellurium resistance" /codon_start=1 /transl_table=11 /product="transmembrane transport protein" /protein_id="YP_004279125.1" /db_xref="GI:325293261" /db_xref="GeneID:10267598" /translation="MEFLLNDFLGTPTWMWAVFISLVLGLLALDLGVLHKNSKEIGIR ESLLMSGFYIAIGLAFGGWIWYQSGEQPAMEYVTGFVVEKSLAMDNIFIIAMIFSYFA IPRQYQHRVLLWGILGVIVLRGIMIAGGAAIVENFHWVLYLFAAFLVFTGLKMLFSSD HDENDIGNNRILKFLRSRLPVTEKLHGEKFFVKETDAATGKLKTFVTPLFLALIMVEI ADLIFAVDSIPAIFAITTDPFIVYTSNIFAILGLRALYFALAALIHRFAYLKYALAAV LVFVGSKIFVADMLGIAKIPPAVSLGVTVAILATGIIGSLIATRKETKAIE" misc_feature 1819005..1819934 /locus_tag="AGROH133_06975" /note="Integral membrane protein TerC family; Region: TerC; cl10468" /db_xref="CDD:189213" gene 1820086..1820604 /locus_tag="AGROH133_06985" /db_xref="GeneID:10267599" CDS 1820086..1820604 /locus_tag="AGROH133_06985" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279126.1" /db_xref="GI:325293262" /db_xref="GeneID:10267599" /translation="MTFETADQAISEKKLWRAKEILQGRLSHPDVDLALFQKYGEVLL EMNDLIEAGRMLFCSGARDERFREAITIFLSRSNRREPQRFLAQLPSSIRRQRHLADF IASPEFERDGWTATQLSRLAPLQTHVSTRPYQRPHRLTSALFIAVIVCVLALSLSSLY TMISFAVRTLTE" gene complement(1820608..1822152) /locus_tag="AGROH133_06987" /db_xref="GeneID:10267600" CDS complement(1820608..1822152) /locus_tag="AGROH133_06987" /note="Predicted ATPase, Atu1862 type; Predicted ATPase" /codon_start=1 /transl_table=11 /product="ATPase AAA" /protein_id="YP_004279127.1" /db_xref="GI:325293263" /db_xref="GeneID:10267600" /translation="MTCSTRNGTLQVGIDMGTLSGGQQAKLDIEELLATRLLVQGNSG SGKSHLLRRLLEQSAQWVQQVIIDPEGDFVTLSDKFGHVVVDGERTEAELAGIANRIR QHRVSCVLTLEGLDIEQQMRAAAAFLNGLFDADREFWYPVLVVVDEAQMFAPSVGGEV TEDARKASLGAMTNLMCRGRKRGLAGVIATQRLAKLAKNVAAEASNFLMGRTFLDIDM ARAADLLGMDRRQAEMFRDLQRGNFVALGPALSRRPLPIVIGAVETSARSSSPKLMPL PDAPQDVEDLIFTPDPEEFTRPATRRTPPAPRPTTDILAELSRSTPAAAGPSPEQSAR AGQPELTPEEREEKIAAVLVEILDDPQSAYRTDAVLYQDFLVRARMRRIPGTPMTLAD FRRQVAIARSGVDAAMAASEGWEKALELSMSVSDDLQGVFLLLVKAALNEEPCPSDAR IARAYGTHSARRARRLLGYFEEKELVVVHADFSGKRIVAFPDLDAKTAPGDADAAEDD ARLAAE" misc_feature complement(<1821910..1822113) /locus_tag="AGROH133_06987" /note="Domain of unknown function DUF87; Region: DUF87; pfam01935" /db_xref="CDD:145224" misc_feature complement(1820680..1822074) /locus_tag="AGROH133_06987" /note="HerA helicase [Replication, recombination, and repair]; Region: COG0433" /db_xref="CDD:30782" gene complement(1822252..1823139) /locus_tag="AGROH133_06988" /db_xref="GeneID:10267601" CDS complement(1822252..1823139) /locus_tag="AGROH133_06988" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="permease protein" /protein_id="YP_004279128.1" /db_xref="GI:325293264" /db_xref="GeneID:10267601" /translation="MALPHILLALITVFLWGFNFVAIKIGVADMPPLFLTGVRYLFAA VPLVFFLPKPNVPWRHMIVYGMAMGFVQFGLLYPAIKLGLPAGLASLVMQSQAFFTLA LAVVFLGERPLPSQIVGAIVAFGGLAVIGVERMTAAALIPLLMGVGSAIAWACGNIVN RRIGQVNAVSFVAWTSLVPVLPLVLLSLVVEGPDAIAEGLHNATPTMALVVIYMAYGA TIVGAGIWSYLLLRYPAGTVAPFSLLVPIVGFVSAYLAFAEHITVFEVVGAALVIIGL MLNVFGRRLSFSRVSSGAA" misc_feature complement(1822285..1823121) /locus_tag="AGROH133_06988" /note="O-acetylserine/cysteine export protein; Provisional; Region: PRK11453" /db_xref="CDD:183142" misc_feature complement(1822750..1823100) /locus_tag="AGROH133_06988" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene complement(1823177..1823815) /gene="rhtB" /locus_tag="AGROH133_06999" /db_xref="GeneID:10267602" CDS complement(1823177..1823815) /gene="rhtB" /locus_tag="AGROH133_06999" /note="Lysine exporter protein (LYSE/YGGA); Putative threonine efflux protein" /codon_start=1 /transl_table=11 /product="homoserine/homoserine lactone efflux protein" /protein_id="YP_004279129.1" /db_xref="GI:325293265" /db_xref="GeneID:10267602" /translation="MPLENWLAFVAASAIMLAIPGPTILLMISYALGHGRKASTATVT GVALGDFTAMTASMLGLGALLATSAALFTGLKWIGAAYLIYLGIKLWRSPVGVEGGEA AGVTGRERPLKIFLHAYVVTALNPKSIVFFVAFLPQFLVPTLPFWPQVLIFEATFLVL ASCNAALYGLLASAARNTIRKPKVQRIVNRTGGGLLIGAGLITFGWKRAVSA" misc_feature complement(1823243..1823815) /gene="rhtB" /locus_tag="AGROH133_06999" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene 1823944..1824111 /locus_tag="AGROH133_07005" /db_xref="GeneID:10267603" CDS 1823944..1824111 /locus_tag="AGROH133_07005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279130.1" /db_xref="GI:325293266" /db_xref="GeneID:10267603" /translation="MQDRNLTAWQAMPRRAAPCPLQPQGKIRGIARPDVPENSATRYM PGLSAASVTEN" gene complement(1824261..1824500) /locus_tag="AGROH133_07006" /db_xref="GeneID:10267604" CDS complement(1824261..1824500) /locus_tag="AGROH133_07006" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279131.1" /db_xref="GI:325293267" /db_xref="GeneID:10267604" /translation="MQKNQPLVAYALPDAVDRLFVTFGVWKTLKAVLVAAMVPRPPPT DLSDLPERLLDDIGLEPSDRKMRREWAPPYWAPRF" gene complement(1824658..1824864) /locus_tag="AGROH133_07007" /db_xref="GeneID:10267605" CDS complement(1824658..1824864) /locus_tag="AGROH133_07007" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279132.1" /db_xref="GI:325293268" /db_xref="GeneID:10267605" /translation="MHLFCRTFAIRDCDLLSRPASRVRCILSVTAIKRRRGMTDYMNM RLTGMSGFSGMVVGGYMSRGIDLR" gene complement(1824881..1825702) /gene="murI" /locus_tag="AGROH133_07008" /db_xref="GeneID:10267606" CDS complement(1824881..1825702) /gene="murI" /locus_tag="AGROH133_07008" /EC_number="5.1.1.3" /note="converts L-glutamate to D-glutamate, a component of peptidoglycan" /codon_start=1 /transl_table=11 /product="Glutamate racemase" /protein_id="YP_004279133.1" /db_xref="GI:325293269" /db_xref="GeneID:10267606" /translation="MLKTTEALADVLKPVLVFDSGIGGLTVLREARVLMPERGFIYVA DDAGFPYGGWEEEALKARILSLFEKLLEDYSPEVCIIACNTAFTLAGADLRARFPDMT FVGTVPAIKPAAERTRSGLVSVLATPGTVKRAYTRDLIQSFATQCHVRLVGSENLARM AESWIRGEPISDEAVLAEIEPCFIDSDGKRTDIVVLACTHYPFMANVFRRLAPWPVDW LDPAEAIARRARHLVPLPQDAEHPDGFDFAVFTSGKPDFATRRLMQGFGLSVSLS" misc_feature complement(1824905..1825666) /gene="murI" /locus_tag="AGROH133_07008" /note="Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518" /db_xref="CDD:193849" gene complement(1825686..1826528) /gene="lasT" /locus_tag="AGROH133_07009" /db_xref="GeneID:10267607" CDS complement(1825686..1826528) /gene="lasT" /locus_tag="AGROH133_07009" /EC_number="2.1.1.-" /note="RNA methyltransferase TrmH, group 1; rRNA methylase" /codon_start=1 /transl_table=11 /product="tRNA/rRNA methyltransferase" /protein_id="YP_004279134.1" /db_xref="GI:325293270" /db_xref="GeneID:10267607" /translation="MAGTNSELELVAEGPAIILVEPQLGENIGMVARAMANFGLAELR LVKPRDGWPNEKARAAASKADHVIDGTKVFETLEEAIKDLNFVYATTARERYGFKPVR APVTAAGTLRAKFKAGERTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQA VLLMSYEWMKSGMDDLDETLFHPIEQRPSTKEQVFGLFEHIEEALDARGYFHPPEKKP KMVDNLRAVLSRRGFSEQEISVFRGVIRSLDRFPRQWPKQAGRAGTAEGPLSERAGEN AEDD" misc_feature complement(1825767..1826498) /gene="lasT" /locus_tag="AGROH133_07009" /note="rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: LasT; COG0565" /db_xref="CDD:30911" misc_feature complement(1826031..1826480) /gene="lasT" /locus_tag="AGROH133_07009" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene complement(1826703..1827233) /locus_tag="AGROH133_07010" /db_xref="GeneID:10267608" CDS complement(1826703..1827233) /locus_tag="AGROH133_07010" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279135.1" /db_xref="GI:325293271" /db_xref="GeneID:10267608" /translation="MRNILLLTAAVLFSHSALAAGPADPVQKVMDITVKNWSGDAENW KYIFDEDMLTSLFSRDFVAQYREASKKPAYEAESGETGDPFGYDVVTNSQDGCPLVDV SVTPGEVKDGVTDVTAKFKLWACMDEAEMKATVDEVHFDVIEENGQPVISDIHRVGDE GRDSLRAEMAAIIKGE" gene 1827451..1828665 /gene="icdA" /locus_tag="AGROH133_07012" /db_xref="GeneID:10267609" CDS 1827451..1828665 /gene="icdA" /locus_tag="AGROH133_07012" /EC_number="1.1.1.42" /note="Converts isocitrate to alpha ketoglutarate; Isocitrate dehydrogenases" /codon_start=1 /transl_table=11 /product="isocitrate dehydrogenase" /protein_id="YP_004279136.1" /db_xref="GI:325293272" /db_xref="GeneID:10267609" /translation="MAKIKVANPVVDLDGDEMTRIIWQLIKDKLILPYLDLDIEYYDL SVENRDATNDQVTVDAAHAIKKHGVGIKCATITPDEQRVEEFGLKQMWKSPNGTIRNI LGGVIFREPIICKNVPRLVPGWTKPIVVGRHAFGDQYKATDFKFPGKGKLTIKFVGED GQVIEKDVFDAPSAGVALAMYNLDESIREFARASMMYGLMRKWPVYLSTKNTILKAYD GRFKDIFEEVYQTEFKAKFDEIGIIYEHRLIDDMVASALKWSGGYVWACKNYDGDVQS DTVAQGFGSLGLMTSVLLSPDGRTVEAEAAHGTVTRHYRQHQKGQETSTNSIASIFAW TRGLAHRAKLDDNAELAKFAATLETVCVDTVESGFMTKDLALLIGPDQPWLSTTAFLD KIDENLKTAMAA" misc_feature 1827451..1828656 /gene="icdA" /locus_tag="AGROH133_07012" /note="Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445" /db_xref="CDD:193821" gene 1829001..1829627 /gene="gst" /locus_tag="AGROH133_07013" /db_xref="GeneID:10267610" CDS 1829001..1829627 /gene="gst" /locus_tag="AGROH133_07013" /EC_number="2.5.1.18" /note="Glutathione S-transferase, C-terminal-like & N-terminal domain" /codon_start=1 /transl_table=11 /product="Glutathione S-transferase" /protein_id="YP_004279137.1" /db_xref="GI:325293273" /db_xref="GeneID:10267610" /translation="MSELIFYTNPMSRGRIARWMLEEVGVPYKTEILGFSTSMKSPAY RLINPMAKVPAIKHGDTIVTEAAAICAYLADAFPGANLAPTPKARGLYYRWMFFAAGP LEMTTSMKAMGFEVPQEKLRMAGCGSYADAINTLERAVSENRFIAGDHFTAADVYVGA HVGWGLQFGTIEKRPAFTDYMAHLTDRPAFKRATQLDEAAAKDMQAAG" misc_feature 1829010..1829606 /gene="gst" /locus_tag="AGROH133_07013" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625" /db_xref="CDD:30970" misc_feature 1829010..1829234 /gene="gst" /locus_tag="AGROH133_07013" /note="GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins...; Region: GST_N_GTT1_like; cd03046" /db_xref="CDD:48595" misc_feature order(1829037..1829039,1829043..1829048,1829052..1829057, 1829064..1829069,1829199..1829201,1829208..1829213) /gene="gst" /locus_tag="AGROH133_07013" /note="putative C-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48595" misc_feature order(1829037..1829039,1829154..1829162,1829193..1829198) /gene="gst" /locus_tag="AGROH133_07013" /note="putative GSH binding site (G-site) [chemical binding]; other site" /db_xref="CDD:48595" misc_feature order(1829154..1829156,1829190..1829195,1829199..1829204, 1829211..1829213) /gene="gst" /locus_tag="AGROH133_07013" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48595" misc_feature 1829274..1829591 /gene="gst" /locus_tag="AGROH133_07013" /note="GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of...; Region: GST_C_8; cd03207" /db_xref="CDD:48134" misc_feature order(1829277..1829279,1829298..1829300,1829457..1829459, 1829466..1829471,1829478..1829480,1829490..1829492) /gene="gst" /locus_tag="AGROH133_07013" /note="putative N-terminal domain interface [polypeptide binding]; other site" /db_xref="CDD:48134" misc_feature order(1829277..1829282,1829289..1829291,1829403..1829405) /gene="gst" /locus_tag="AGROH133_07013" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:48134" misc_feature order(1829298..1829300,1829310..1829315,1829322..1829327, 1829481..1829483,1829490..1829492) /gene="gst" /locus_tag="AGROH133_07013" /note="putative substrate binding pocket (H-site) [chemical binding]; other site" /db_xref="CDD:48134" gene complement(1829705..1830088) /locus_tag="AGROH133_07014" /db_xref="GeneID:10267611" CDS complement(1829705..1830088) /locus_tag="AGROH133_07014" /note="Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004279138.1" /db_xref="GI:325293274" /db_xref="GeneID:10267611" /translation="MRFVNPIPFVCDINRSREFYRDRLGLKVLDDFGNFVLFESGFAI HEGRSLEQTVWRTSPDTDEPYGRRNLLLYFEHEDVDAAFRNIAPHVELIHPVERQAWG QRVFRFYDPDGHAIEIGEPLAQSNE" misc_feature complement(1829723..1830088) /locus_tag="AGROH133_07014" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_23; cd09011" /db_xref="CDD:176713" gene complement(1830164..1832857) /gene="alaS" /locus_tag="AGROH133_07015" /db_xref="GeneID:10267612" CDS complement(1830164..1832857) /gene="alaS" /locus_tag="AGROH133_07015" /EC_number="6.1.1.7" /note="Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA" /codon_start=1 /transl_table=11 /product="Alanyl-tRNA synthetase" /protein_id="YP_004279139.1" /db_xref="GI:325293275" /db_xref="GeneID:10267612" /translation="MDSSCERCVGMSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDP TLMFTNAGMVQFKNVFTGLESRPYSTAASAQKCVRAGGKHNDLDNVGYTARHHTFFEM LGNFSFGDYFKEEAITHAWNLITKEFGIDRNRLLVTVYHTDDEAFNLWKKIAGFSDDR IIRIPTSDNFWAMGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQ YEQLTKEERIDLPRPSIDTGMGLERISALLQGKHDNYDTDLFRALISASVEATGVPAE GEKRASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIMRRAMRHAELLGSREPLIY KLLPALIQQMGRAYPELVRAEALISETLKLEETRFRKTLERGLSLLSDATSTLHKGDM LDGETAFKLYDTYGFPLDLTQDALRAREIGVDISGFTDAMQRQKAEARSHWAGSGDKA TETVWFELKEKLGATEFLGYDTETAEGVIQAIVKDGKSVDSAAEGETVQIVVNQTPFY GESGGQMGDTGVISGDNGTFTVSETQKKGEGLFVHSGTVSKGGLKLDDAVQLTVDHDR RSRLRANHSATHLLHEALREVLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEE MANEIVLQNSPVVTRLMSVDDAIAEGAMALFGEKYGDEVRVVSMGTGVHGAKANRPYS VELCGGTHVAATGQIGLIRILGESAVGAGVRRLEAVTGQGALAYLSEQDERVKALASS LKVQPGDVLSRVEGLLDERKKLERELADARKKLAMGGGSSDAGANDVQQVAGVNFLAK SLSGIDAKDLKGLADEAKANIGSGVVLLIAVSEDGKASAVAAVTEDLTGRFSAVDIVR TASAALGGKGGGGRPDMAQAGGPDGAKAQDAIDAVAAALAA" misc_feature complement(1830218..1832827) /gene="alaS" /locus_tag="AGROH133_07015" /note="alanyl-tRNA synthetase; Reviewed; Region: alaS; PRK00252" /db_xref="CDD:178947" misc_feature complement(1832105..1832818) /gene="alaS" /locus_tag="AGROH133_07015" /note="Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation...; Region: AlaRS_core; cd00673" /db_xref="CDD:29811" misc_feature complement(1832750..1832764) /gene="alaS" /locus_tag="AGROH133_07015" /note="motif 1; other site" /db_xref="CDD:29811" misc_feature complement(order(1832129..1832131,1832138..1832143, 1832153..1832158,1832213..1832215,1832225..1832230, 1832540..1832548,1832552..1832554,1832558..1832560, 1832621..1832623,1832675..1832677,1832681..1832683)) /gene="alaS" /locus_tag="AGROH133_07015" /note="active site" /db_xref="CDD:29811" misc_feature complement(1832618..1832626) /gene="alaS" /locus_tag="AGROH133_07015" /note="motif 2; other site" /db_xref="CDD:29811" misc_feature complement(1832129..1832146) /gene="alaS" /locus_tag="AGROH133_07015" /note="motif 3; other site" /db_xref="CDD:29811" misc_feature complement(1830710..1830871) /gene="alaS" /locus_tag="AGROH133_07015" /note="Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; cl08469" /db_xref="CDD:158351" gene complement(1833059..1834150) /gene="recA" /locus_tag="AGROH133_07016" /db_xref="GeneID:10267613" CDS complement(1833059..1834150) /gene="recA" /locus_tag="AGROH133_07016" /note="catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; RecA/RadA recombinase" /codon_start=1 /transl_table=11 /product="recombinase A" /protein_id="YP_004279140.1" /db_xref="GI:325293276" /db_xref="GeneID:10267613" /translation="MAQNSLRLVEDKSVDKSKALEAALSQIERSFGKGSIMKLGSNEN VVEVETISTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICA FVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDILVVDSVAAL TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKCMVIFINQIRMKIGVMFGSPE TTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQTRVKVVKNKMAPPFKQVEFDIMYG EGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPEMASEIELAL RQNAGLIADRFLQNGGPEAGESDDGPDEG" misc_feature complement(1833077..1834108) /gene="recA" /locus_tag="AGROH133_07016" /note="recombinase A; Provisional; Region: recA; PRK09354" /db_xref="CDD:181793" misc_feature complement(1833131..1834108) /gene="recA" /locus_tag="AGROH133_07016" /note="RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983" /db_xref="CDD:29984" misc_feature complement(order(1833185..1833187,1833323..1833325, 1833467..1833469,1833479..1833481,1833782..1833787, 1833800..1833820,1833824..1833829,1834037..1834051, 1834061..1834063,1834070..1834075,1834079..1834084)) /gene="recA" /locus_tag="AGROH133_07016" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:29984" misc_feature complement(1833899..1833922) /gene="recA" /locus_tag="AGROH133_07016" /note="Walker A motif; other site" /db_xref="CDD:29984" misc_feature complement(order(1833323..1833334,1833398..1833400, 1833437..1833439,1833536..1833538,1833686..1833688, 1833809..1833811,1833818..1833820,1833830..1833832, 1833896..1833916)) /gene="recA" /locus_tag="AGROH133_07016" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29984" misc_feature complement(1833686..1833700) /gene="recA" /locus_tag="AGROH133_07016" /note="Walker B motif; other site" /db_xref="CDD:29984" gene 1834397..1835338 /locus_tag="AGROH133_07017" /db_xref="GeneID:10267614" CDS 1834397..1835338 /locus_tag="AGROH133_07017" /note="Carbohydrate/purine kinase; Sugar kinases, ribokinase family" /codon_start=1 /transl_table=11 /product="carbohydrate kinase" /protein_id="YP_004279141.1" /db_xref="GI:325293277" /db_xref="GeneID:10267614" /translation="MKKILVLGGAHIDRRGMIETETAPGASNPGSWMEEAGGGGFNAA RNLSRLGFAVRIIAPRGGDVTGEAVAEAARQAGVEDTPFVFLDRRTPSYTAILERDGN LVIALADMDLYKLFSPRRLKVRAVREAITASDLLLCDANLPEDTLKALGLIARACRKP LAAIAISPAKAVKLKDMLADIDILFMNEAEARALTGQTADNVRDWPGILRSAGLAGGV ITRGASEVVAFNATQTASLHPPIIREVKDVTGAGDAMASGYLAAITEGKTITEALRLG AAAAAITVQSPFATAQDLSKDSVETMLGLVPKAEMLA" misc_feature 1834403..1835254 /locus_tag="AGROH133_07017" /note="YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time; Region: YeiC_kinase_like; cd01941" /db_xref="CDD:29363" misc_feature order(1834520..1834522,1835144..1835146,1835153..1835155) /locus_tag="AGROH133_07017" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29363" misc_feature order(1834955..1834957,1835054..1835056,1835138..1835140, 1835147..1835152,1835159..1835161,1835225..1835227, 1835234..1835236) /locus_tag="AGROH133_07017" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29363" gene 1835370..1836293 /locus_tag="AGROH133_07018" /db_xref="GeneID:10267615" CDS 1835370..1836293 /locus_tag="AGROH133_07018" /note="Indigoidine synthase A like protein; Uncharacterized enzyme involved in pigment biosynthesis" /codon_start=1 /transl_table=11 /product="Indigoidine synthase A family protein" /protein_id="YP_004279142.1" /db_xref="GI:325293278" /db_xref="GeneID:10267615" /translation="MTRPISPLLPIVYSQEVAAAKQRGAPIVALESTIITHGMPYPGN IEMAEGVEQIIRDQGAVPATIAVIHGTLHIGLEKEQLEALAQTTDAMKVSRADIAFAI AERRTGATTVAATMIAAARAGIRVFATGGIGGVHKGAEETFDISADLTELAKTGVIVV CAGAKAILDIPKTLEVLETNGVPVVTFGSEEFPAFWSRSSGLPSPLSLNSPAAIANFQ TTREQLGIDGGMLIANPVPEEDEIPREEMEIYINRAISHAEREEITGKAATPFLLGDI FRLTDGRSLATNIALVRNNAQLAAEIAVALN" misc_feature 1835415..1836287 /locus_tag="AGROH133_07018" /note="Indigoidine synthase A like protein; Region: Indigoidine_A; cl00983" /db_xref="CDD:193995" gene complement(1836496..1838811) /locus_tag="AGROH133_07019" /db_xref="GeneID:10267616" CDS complement(1836496..1838811) /locus_tag="AGROH133_07019" /note="Outer membrane protein, OmpA/MotB, C-terminal; Outer membrane protein and related peptidoglycan-associated (lipo)proteins" /codon_start=1 /transl_table=11 /product="outer membrane protein, OmpA family protein" /protein_id="YP_004279143.1" /db_xref="GI:325293279" /db_xref="GeneID:10267616" /translation="MQGVDQRLHARPDSQCRGISGVQRLADEEAPMLKKNTLLTGVVF PLMSLAIAVEPAAAGYAGAARTQTHMPQAQAPVILAQAQPQAEEQNPEELLRKQRQQA EEAQPKPEPEPKKQEQAPEPQREQPKAEAAPAEPRPEPKREAQPEPQREPQPEPKRQP QQREAQPEPAPAEQPPARKQRPQPEPEAAPAPAEQQPQERPRKPARAEQPAGEGEQRP ARPRKPEPAAEQPAARPENTEQPAKQREPAAEKKPVEEKAPAPEPKSEPAEKAVPEKK PAAPEPAVKEAPVPTEAPTPARPPAPEAQPNPAPGQQPSEKQPVEGQGKTEPAAPLPG TPTPPPPSGATTGQAPAGEAVPNQVAIPQTEAPPTTKQELDKAKAIAKDPSKTADTVI LPVDKGAAVLDSDKEVERSGNNQAREQRRREREQAGDVKVPTSDAEAQRAGAAGGKAP PPVKMEAITSQQGERVDRRPQYDRPEGAREWQPREGGRRDQDRDAPIILQFGDRVVVR GDDNQRFIRDGGEPYYERLPGGRVRETVERRDGTQVVTIRNRYGDVIQRSRIDDRGRE YVLFYAPELMDEPDREYVYRDPGLDLPPMRLRIPVRDYIIDTSSDPDRDYYRFLEQPP VEPVERVYSLDEVRYSARIRDKVRRIDLDTITFATGSADIPMAQARSLRKVADAINKA LAKNPAETFLIEGHTDAVGSDESNLVLSDERAASVANVLTDVYGIPPENLATQGYGER YLKVQTLGPEQQNRRVTIRRVTPLVRPVAQN" misc_feature complement(1836535..1837056) /locus_tag="AGROH133_07019" /note="Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885" /db_xref="CDD:32711" misc_feature complement(1836535..1836852) /locus_tag="AGROH133_07019" /note="Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185" /db_xref="CDD:143586" misc_feature complement(order(1836550..1836552,1836685..1836687, 1836694..1836699,1836709..1836711,1836718..1836723, 1836832..1836837)) /locus_tag="AGROH133_07019" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:143586" gene complement(1838905..1839045) /locus_tag="AGROH133_07020" /db_xref="GeneID:10267617" CDS complement(1838905..1839045) /locus_tag="AGROH133_07020" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279144.1" /db_xref="GI:325293280" /db_xref="GeneID:10267617" /translation="MVVHPQSVVVFSADVVSAGATERVAIRGLQRAAIIRPVGQKMQL QY" gene 1839060..1839833 /locus_tag="AGROH133_07021" /db_xref="GeneID:10267618" CDS 1839060..1839833 /locus_tag="AGROH133_07021" /note="Bacterial extracellular solute-binding protein, family 3; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /codon_start=1 /transl_table=11 /product="arginine-binding periplasmic protein" /protein_id="YP_004279145.1" /db_xref="GI:325293281" /db_xref="GeneID:10267618" /translation="MPISTRLLAAVSIAAISLFSGAALAQDKIVIGTEGAYPPFNNLE ADGTLTGFDIDIAKALCVEMKAECTFVTNDWDGIIPALQAKKFDAIIASMSITPERLQ KVDFSKKYYNTPPAIAVPKDSPIKSVDDLKGKSLGAQGSTTHSNYAEKHFPGSDLKMY PTADEYKLDISNGRIDAVIDDIVVLSEWLKSDAGKCCKILTPLPVDVEINGNGAGVAV RKGDTALADKFTAAIAGIRANGKYQEINKKYFDFDVYGQ" misc_feature 1839114..1839809 /locus_tag="AGROH133_07021" /note="lysine-arginine-ornithine-binding periplasmic protein; Region: 3A0103s03R; TIGR01096" /db_xref="CDD:162200" misc_feature 1839144..1839809 /locus_tag="AGROH133_07021" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(1839168..1839170,1839282..1839284,1839357..1839359, 1839486..1839488,1839600..1839602) /locus_tag="AGROH133_07021" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(1839549..1839551,1839561..1839563,1839579..1839581) /locus_tag="AGROH133_07021" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature order(1839675..1839677,1839690..1839704) /locus_tag="AGROH133_07021" /note="hinge residues; other site" /db_xref="CDD:29040" gene 1839947..1840750 /locus_tag="AGROH133_07023" /db_xref="GeneID:10267619" CDS 1839947..1840750 /locus_tag="AGROH133_07023" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type arginine transport system, permease component" /codon_start=1 /transl_table=11 /product="Inner membrane arginine ABC transporter permease protein" /protein_id="YP_004279146.1" /db_xref="GI:325293282" /db_xref="GeneID:10267619" /translation="MSGAFSAIGAFWTYVSTLLDPFCGPVGLFTLFGNGTLVTCGDAG WGDEIAFGVKVTISLALATLPVGLVIGFLIALAAQSEEKSLRLAAGVYTTIFRGLPEL LTLFIVYYGIQMLLQSAAGYVGITGPVEINAFVAGMVALSVVFSSYSSEVLLSAFKAI PKGQYEAGHALGLSRGHTMVLVIIPQLVRIALPGMTNLWVILLKDTSYVSIIGLADIV RQTGIAARVSKEAFFFYGIACLLYLILALLSSIGIGFIDRWSRKSEASR" misc_feature 1840064..1840747 /locus_tag="AGROH133_07023" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature 1840109..1840594 /locus_tag="AGROH133_07023" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1840151..1840156,1840163..1840168,1840181..1840183, 1840211..1840222,1840226..1840255,1840262..1840267, 1840271..1840273,1840373..1840378,1840382..1840384, 1840388..1840390,1840397..1840402,1840406..1840408, 1840418..1840423,1840430..1840432,1840481..1840483, 1840523..1840528,1840535..1840537,1840556..1840567, 1840574..1840579) /locus_tag="AGROH133_07023" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1840229..1840273,1840556..1840573) /locus_tag="AGROH133_07023" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1840271..1840273,1840358..1840360,1840574..1840576) /locus_tag="AGROH133_07023" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1840433..1840471,1840487..1840492,1840502..1840504) /locus_tag="AGROH133_07023" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1840747..1841577 /locus_tag="AGROH133_07030" /db_xref="GeneID:10267620" CDS 1840747..1841577 /locus_tag="AGROH133_07030" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type arginine/histidine transport system, permease component" /codon_start=1 /transl_table=11 /product="Inner membrane arginine ABC transporter permease protein" /protein_id="YP_004279147.1" /db_xref="GI:325293283" /db_xref="GeneID:10267620" /translation="MSHVQELIPPRPAPVATDKPLNISRVVGIGVITLWLLLAAGLIF AMIEGWDWAKFERYGPRYIDGLITTITLVGSSIILGALLSVPIAFARMSENRVISALA YAYVYVFRSTPLLAQLFLIYYGLGSFRQGLETVGLWWFFREAWYCGLLSLTLNTAAYQ AEILRGAIRSVPRGQIEGAASLGLSKFITFRKVILPQALIVALRPYGNEIILMIKGSA VVSIVTVFDLMGQTRYAFSRTFDYQAYLWAAIFYLTIVETLRHVWAWVEARLTRHLKR " misc_feature 1840918..1841574 /locus_tag="AGROH133_07030" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature 1840942..1841514 /locus_tag="AGROH133_07030" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(1840990..1840995,1841002..1841007,1841020..1841022, 1841050..1841061,1841065..1841094,1841101..1841106, 1841110..1841112,1841206..1841211,1841215..1841217, 1841221..1841223,1841230..1841235,1841239..1841241, 1841251..1841256,1841263..1841265,1841314..1841316, 1841356..1841361,1841368..1841370,1841389..1841400, 1841407..1841412,1841449..1841454,1841482..1841487, 1841494..1841499,1841503..1841508) /locus_tag="AGROH133_07030" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1841068..1841112,1841389..1841406) /locus_tag="AGROH133_07030" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(1841110..1841112,1841191..1841193,1841407..1841409, 1841443..1841445,1841452..1841454,1841482..1841484) /locus_tag="AGROH133_07030" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(1841266..1841304,1841320..1841325,1841335..1841337) /locus_tag="AGROH133_07030" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 1841725..1842012 /gene="usg" /locus_tag="AGROH133_07037" /db_xref="GeneID:10267621" CDS 1841725..1842012 /gene="usg" /locus_tag="AGROH133_07037" /note="Usg-like family; Usg protein, subunit of phosphoribosylanthranilate isomerase" /codon_start=1 /transl_table=11 /product="usg protein" /protein_id="YP_004279148.1" /db_xref="GI:325293284" /db_xref="GeneID:10267621" /translation="MRTGTADMNKEMEMMLRGYGLTTAQIFYRMPDHPLVLQTYVWQD YDLAPDFPEMHGFLKFWQEKLDGPLHSVRYVHRQVISAQEWRALKGEFILH" misc_feature 1841746..1842009 /gene="usg" /locus_tag="AGROH133_07037" /note="Usg-like family; Region: Usg; cl11567" /db_xref="CDD:159547" gene 1842097..1842921 /locus_tag="AGROH133_07038" /db_xref="GeneID:10267622" CDS 1842097..1842921 /locus_tag="AGROH133_07038" /EC_number="2.1.1.-" /note="methyltransferase domain; Predicted methyltransferase (contains TPR repeat)" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_004279149.1" /db_xref="GI:325293285" /db_xref="GeneID:10267622" /translation="MTKNQKIDEEALAEAYNRALALEKAGDVDAAVKAYEEVLAIDPD DHGGAAVRIAAMGRGEPPSKAPDAYVETLFDQHAEAFEDILVEQLGYAVPMMVRQRLQ TLELGPFKRLLDLGCGTGLTGEALRDMADDITGIDISENMVEIAHEKDLYETLYVAEA EDFLEDNDDEPFDIITATDVLPYLGALEPLFFGAAENLVPGGLLIFSSETLPEATMAG RPYMVGPHQRFAHAETYVRERLAATGFDIVEVTDINVRMQDGNPTPGHLVIARLKG" misc_feature 1842097..1842918 /locus_tag="AGROH133_07038" /note="Predicted methyltransferase (contains TPR repeat) [General function prediction only]; Region: COG4976" /db_xref="CDD:34582" misc_feature 1842133..1842231 /locus_tag="AGROH133_07038" /note="Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi...; Region: TPR; cl02429" /db_xref="CDD:194311" misc_feature <1842490..1842708 /locus_tag="AGROH133_07038" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(1843017..1843982) /gene="ssuA" /locus_tag="AGROH133_07039" /db_xref="GeneID:10267623" CDS complement(1843017..1843982) /gene="ssuA" /locus_tag="AGROH133_07039" /note="ABC transporter, substrate-binding protein, aliphatic sulphonates; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="aliphatic sulfonate ABC transporter substrate-binding protein" /protein_id="YP_004279150.1" /db_xref="GI:325293286" /db_xref="GeneID:10267623" /translation="MLTRRGTLGLIAGATGAAFLPHIRRAGAATTTLRIGWQKNGVIA LAKSQGALEALLKDRGIEVKWSEFSSGPPLLEALGAGALDIGPTGDVPPLFAQAAGGN LRYVGTYKGAAGGSAILVQKDSPLKTLADLKGKKVAFKRGSSAHNVTVKALRKAGLTL NDITSIDLAPPDAAAAFRSGSIDAWSIWDPYFAVAEKEPTTRVLATAEGIVDPWSYFL ANGDFVESNPDLVPLLLKELASVGAKAQANIDETAKLLAAITGVPQDVTKVSLTRPGA DLGRVSLVSDEAISYQQALADEFYDLKIVPKKLKVTDIVWRPKAS" misc_feature complement(1843032..1843886) /gene="ssuA" /locus_tag="AGROH133_07039" /note="ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728" /db_xref="CDD:130789" misc_feature complement(1843257..>1843640) /gene="ssuA" /locus_tag="AGROH133_07039" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature complement(order(1843440..1843442,1843458..1843460, 1843470..1843472)) /gene="ssuA" /locus_tag="AGROH133_07039" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature complement(1843332..1843349) /gene="ssuA" /locus_tag="AGROH133_07039" /note="hinge residues; other site" /db_xref="CDD:29040" gene complement(1844274..1844762) /locus_tag="AGROH133_07041" /db_xref="GeneID:10267624" CDS complement(1844274..1844762) /locus_tag="AGROH133_07041" /note="Bacterial regulatory proteins, AsnC/Lrp; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, AsnC family" /protein_id="YP_004279151.1" /db_xref="GI:325293287" /db_xref="GeneID:10267624" /translation="MDRLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEED GVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLKRFSEVVSEFPEVVEFYRMSGDV DYLLRVVVPDIAAYDAFYKRMIAKIEIRDVSSAFALEQIKYTTELPLDYMLLDNPKSG EE" misc_feature complement(1844316..1844762) /locus_tag="AGROH133_07041" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(1844433..1844762) /locus_tag="AGROH133_07041" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1844343..>1844477) /locus_tag="AGROH133_07041" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(1844833..1845477) /locus_tag="AGROH133_07042" /db_xref="GeneID:10267625" CDS complement(1844833..1845477) /locus_tag="AGROH133_07042" /codon_start=1 /transl_table=11 /product="Uracil-DNA glycosylase" /protein_id="YP_004279152.1" /db_xref="GI:325293288" /db_xref="GeneID:10267625" /translation="MAEADRALPMNDDGLDGLRGAIALCRICRDTPTYGRLPHEPRPV VVMSTRARILIAGQAPGLRVHETGVPFNDASGDRLRQWLNVDRETFYDPDRFAIVPMG FCFPGYDDKGSDLPPRRECAPQWREKVLAAMPQVELVLAIGQYAQAFHLGERRRKTMT ETVYDWRSYFHSNSGPAILPLPHPSWRNTGWLRKNPWFTEELLPVLRQHVEMRL" misc_feature complement(1844848..1845462) /locus_tag="AGROH133_07042" /note="Uracil DNA glycosylase superfamily; Region: UDG; cl00483" /db_xref="CDD:193838" gene complement(1845470..1846063) /gene="exoI" /locus_tag="AGROH133_07043" /db_xref="GeneID:10267626" CDS complement(1845470..1846063) /gene="exoI" /locus_tag="AGROH133_07043" /note="Micrococcal nuclease (thermonuclease) homologs" /codon_start=1 /transl_table=11 /product="succinoglycan biosynthesis protein" /protein_id="YP_004279153.1" /db_xref="GI:325293289" /db_xref="GeneID:10267626" /translation="MRRNGGRRGFFSIFRDGGLFLATVFLGILIAAKLDQINSETHTG RFFVIDGDTLSKGEDRFRLLGIDAPELSQTCRRGSETWPCGAEARRVLQQMIEGPTFS CSGSSRDRYGRLLVYCSAGDRDVSSEMVASGFAIASGYFQFSGEQALARKEARGIWAG EFEKPAEWRREHRAADLQTPAAGFLTIIRHLLGWNHG" misc_feature complement(1845587..1845925) /gene="exoI" /locus_tag="AGROH133_07043" /note="Staphylococcal nuclease homologues; Region: SNc; smart00318" /db_xref="CDD:128613" misc_feature complement(1845587..1845925) /gene="exoI" /locus_tag="AGROH133_07043" /note="Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds; Region: SNc; cl00140" /db_xref="CDD:193675" misc_feature complement(order(1845725..1845727,1845731..1845736, 1845854..1845856,1845863..1845865,1845881..1845883, 1845908..1845910)) /gene="exoI" /locus_tag="AGROH133_07043" /note="Catalytic site; other site" /db_xref="CDD:29137" gene 1846172..1847707 /locus_tag="AGROH133_07046" /db_xref="GeneID:10267627" CDS 1846172..1847707 /locus_tag="AGROH133_07046" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004279154.1" /db_xref="GI:325293290" /db_xref="GeneID:10267627" /translation="MSKSVSTSTDKIIVDRSRKHRNKAVFDTVKTTRERLQQGAGGSE AYEREMLTMHIAEALQGAMIMPLFIVLASIIGLYITGDIGLIIWSLIALSFHAMSLVL AKRAAKQGITAENLPKWRNLFLAMQILIGCAWAMFALAEPVRNNPALVLFFKGATLLI ALSLTAMANFMLRRATFMTFLPVLAALCVTSVVSRDPFDVGLALMFGMAILFCHRITS RLYQTSIKLLSSQTEKDDLIAELEVANSMSDEARRRAEEANLAKSRFLASMSHELRTP LNAILGFSEVMSAEVLGPLNNPLYKEYSGDIHRSGQHLLDLINEILDLSRIEAGRYDL NEEAVSMLEIAEDCIGMIQLRARAKTIRISQQFESSLPQVWADEKSIRQVILNLLSNA VKFTPQGGEILVKAGWTAGGGQYVSIKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQG TGLGLPIVQAILAKHDGQFILKSKLREGTEGIAILPAKRVLQSLPAVEETHAIQPRRR SFA" misc_feature 1846679..1847641 /locus_tag="AGROH133_07046" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature 1846946..1847149 /locus_tag="AGROH133_07046" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(1846964..1846966,1846976..1846978,1846988..1846990, 1846997..1846999,1847009..1847011,1847018..1847020, 1847078..1847080,1847090..1847092,1847099..1847101, 1847111..1847113,1847120..1847122,1847132..1847134) /locus_tag="AGROH133_07046" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 1846982..1846984 /locus_tag="AGROH133_07046" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 1847312..1847611 /locus_tag="AGROH133_07046" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(1847330..1847332,1847342..1847344,1847351..1847353, 1847423..1847425,1847429..1847431,1847435..1847437, 1847441..1847446,1847525..1847536,1847582..1847584, 1847588..1847590,1847603..1847608) /locus_tag="AGROH133_07046" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 1847342..1847344 /locus_tag="AGROH133_07046" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(1847435..1847437,1847441..1847443,1847525..1847527, 1847531..1847533) /locus_tag="AGROH133_07046" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(1847724..1848128) /gene="dgkA" /locus_tag="AGROH133_07052" /db_xref="GeneID:10267628" CDS complement(1847724..1848128) /gene="dgkA" /locus_tag="AGROH133_07052" /EC_number="2.7.1.107" /note="Prokaryotic diacylglycerol kinase" /codon_start=1 /transl_table=11 /product="Diacylglycerol kinase" /protein_id="YP_004279155.1" /db_xref="GI:325293291" /db_xref="GeneID:10267628" /translation="MDATPQKKQPEPAFRKEKGWRHLFAAARYSLQGLGRLWQEAAFR HEVLAFGVGLALLLVAGAPFAHLLVFTVLMLLLFAVEALNTAIEELVDRISPEISSVG RHAKDLGSFAVFCLLTANGFFVLYSLVTTLFF" misc_feature complement(1847727..1848089) /gene="dgkA" /locus_tag="AGROH133_07052" /note="Prokaryotic diacylglycerol kinase; Region: DAGK_prokar; cl00526" /db_xref="CDD:153830" gene complement(1848137..1849171) /gene="cobT" /locus_tag="AGROH133_07055" /db_xref="GeneID:10267629" CDS complement(1848137..1849171) /gene="cobT" /locus_tag="AGROH133_07055" /EC_number="2.4.2.21" /note="catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; NaMN:DMB phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide- dimethylbenzimidazolephosphoribosyltransferase" /protein_id="YP_004279156.1" /db_xref="GI:325293292" /db_xref="GeneID:10267629" /translation="MSMSGLPFDDFRALLRELPGPDTHALVAAKERNAQLTKPAGSLG RLEEIAMWLAAWSGRSPAVTRPLVAIFAGNHGVTRHGITPYPTSVTQQMVENFAAGGA AINQICVTNDLGLKIFDLALDYPTGDITCEPALSERDCAATMAFGMEAIAGGTDLLCV GEMGIGNTTIAAAINLALYGGTAEEWTGPGTGSEGEVMARKIAAVKAAVEFHKDHLSD PLEIMRRLGGREIAAIAGAILAARVQRIPVLIDGYVATAAAALLKAANPSALDHCLIG HVSGEPGHLAAVEKLGKTPLLALGMRLGEGTGAALAAGIVKAAAACHSGMATFEAAGV DTGTHSHTEH" misc_feature complement(1848170..1849132) /gene="cobT" /locus_tag="AGROH133_07055" /note="Phosphoribosyltransferase; Region: DBI_PRT; pfam02277" /db_xref="CDD:190270" misc_feature complement(1848176..1849063) /gene="cobT" /locus_tag="AGROH133_07055" /note="Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT), also called CobT; Region: DMB-PRT_CobT; cd02439" /db_xref="CDD:143332" misc_feature complement(order(1848176..1848178,1848191..1848196, 1848206..1848211,1848218..1848220,1848230..1848232, 1848239..1848241,1848263..1848265,1848269..1848286, 1848290..1848292,1848332..1848334,1848845..1848847, 1848851..1848856,1848863..1848871,1848893..1848898, 1848905..1848907,1848920..1848922,1849034..1849063)) /gene="cobT" /locus_tag="AGROH133_07055" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143332" misc_feature complement(order(1848188..1848190,1848257..1848265, 1848335..1848337,1848410..1848418,1848668..1848688, 1848893..1848895,1848905..1848907,1848923..1848925, 1849052..1849057,1849061..1849063)) /gene="cobT" /locus_tag="AGROH133_07055" /note="active site pocket [active]" /db_xref="CDD:143332" misc_feature complement(1848257..1848259) /gene="cobT" /locus_tag="AGROH133_07055" /note="putative cataytic base [active]" /db_xref="CDD:143332" gene 1849303..1850088 /gene="cobS" /locus_tag="AGROH133_07056" /db_xref="GeneID:10267630" CDS 1849303..1850088 /gene="cobS" /locus_tag="AGROH133_07056" /EC_number="2.7.8.26" /note="catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; Cobalamin-5-phosphate synthase" /codon_start=1 /transl_table=11 /product="cobalamin 5'-phosphate synthase" /protein_id="YP_004279157.1" /db_xref="GI:325293293" /db_xref="GeneID:10267630" /translation="MKAGDFITDVMHSVAFLSRLPVPSRFFGEGDGPSMRRTARAFPA AGLLIALPAAVLVVALAKFDASPQLTGWLAIAVTALITGALHEDGLADMADGFGSGKD KPKTLEIMKDSRIGSYGTIAMVLSFALRATALASLIETLPAKTAAACLIAALVVSRAL MVWHWQSLPAAKTSGIAAGAGQPGESERNIALATGLLLLVLFTLHALPFVSIVVVLAA ACLATVLFGRLCVSKIGGHTGDTIGASQQITEIVTLVALALAT" misc_feature 1849321..1850085 /gene="cobS" /locus_tag="AGROH133_07056" /note="Cobalamin-5-phosphate synthase; Region: CobS; cl00415" /db_xref="CDD:185982" gene 1850108..1850302 /locus_tag="AGROH133_07062" /db_xref="GeneID:10267631" CDS 1850108..1850302 /locus_tag="AGROH133_07062" /note="Protein of unknown function DUF1289" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279158.1" /db_xref="GI:325293294" /db_xref="GeneID:10267631" /translation="METPCIHICSLDATNSLCIGCGRTLDEIGGWATYSDEKRRMIMQ ALPERLAKTDKDTSRETHTA" misc_feature 1850111..1850263 /locus_tag="AGROH133_07062" /note="Protein of unknown function (DUF1289); Region: DUF1289; cl01304" /db_xref="CDD:154323" gene 1850299..1851006 /locus_tag="AGROH133_07063" /db_xref="GeneID:10267632" CDS 1850299..1851006 /locus_tag="AGROH133_07063" /note="Conserved hypothetical protein CHP02281; Predicted aspartyl protease" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004279159.1" /db_xref="GI:325293295" /db_xref="GeneID:10267632" /translation="MNRLTFVLLLLAVGLGLLLVNHDSGRTFGIDNEKFGQIVYLLPI AGLLSVGILAGSRGSFASVVRQLAIWLVIILGLVSVYLYRYDLQSFADRLLGGLMPGR AVVVTTAGGEQEIILHKSMSGHFEANVSIEGKTIHMLVDTGASSVVLANADAAAIGID TTKLRYTVPVMTANGRTAAAPVTLSEIGIGPIARSNIPALVAQDGQLGQSLLGMSFLS TLGSMQMQTDELRLRDR" misc_feature 1850359..1851000 /locus_tag="AGROH133_07063" /note="Predicted aspartyl protease [General function prediction only]; Region: COG3577" /db_xref="CDD:33378" misc_feature 1850665..1850952 /locus_tag="AGROH133_07063" /note="Bacterial aspartate proteases, retropepsin-like protease family; Region: retropepsin_like_bacteria; cd05483" /db_xref="CDD:133150" misc_feature 1850719..1850727 /locus_tag="AGROH133_07063" /note="catalytic motif [active]" /db_xref="CDD:133150" misc_feature 1850719..1850721 /locus_tag="AGROH133_07063" /note="Catalytic residue [active]" /db_xref="CDD:133150" gene complement(1851121..1851882) /gene="hndJ" /locus_tag="AGROH133_07068" /db_xref="GeneID:10267633" CDS complement(1851121..1851882) /gene="hndJ" /locus_tag="AGROH133_07068" /note="ABC-2 type transporter; ABC-type multidrug transport system, permease component" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter, permease protein" /protein_id="YP_004279160.1" /db_xref="GI:325293296" /db_xref="GeneID:10267633" /translation="MNFEAVKSIYLFEMARTRRTLLQSVVSPVISTSLYFIVFGTAIG SRIQEVGGVSYGAFITPGLIMLTLLTQCISNGSFGIYFPKFTGTVYEILSAPVAMTEI VAGYVGAAATKGLMIGTIILITASFFVDITIAHPFMMILFFVLTAVSFSLFGFIIGIW ATNFEQLNLIPMLVVPPLTFLGGSFYSIDMLPPFWQTVSHFNPVLYLISGFRWSFYEI ADVNPVISLAMITLFLALCLGVVGWMFKTGYRLRN" misc_feature complement(1851124..1851882) /gene="hndJ" /locus_tag="AGROH133_07068" /note="ABC-2 type transporter; Region: ABC2_membrane; cl11417" /db_xref="CDD:196223" gene complement(1851879..1852892) /gene="hndI" /locus_tag="AGROH133_07075" /db_xref="GeneID:10267634" CDS complement(1851879..1852892) /gene="hndI" /locus_tag="AGROH133_07075" /EC_number="3.6.3.25" /note="ABC transporter; ABC-type multidrug transport system, ATPase component" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter ATP-binding protein" /protein_id="YP_004279161.1" /db_xref="GI:325293297" /db_xref="GeneID:10267634" /translation="MQCSGRWAGNCGLYGLYGVHLTRFFERFAMNAIVSIRNLTKSYS NGFQALKGVSLDIREGEILALLGPNGAGKTTLISIICGLVNPGEGSVLVGGYDVVKDF RQTRALIGLVPQELTTDQFETVWNTVSFSRGLHGQKKNPELIERVLKSLSLWDKKDNM LRELSGGMKRRVLIAKALAHEPKVLFLDEPTAGVDVTLRRDMWNVVSELRSKGVTIIL TTHYIEEAEEIADRVGVINGGQLLLVEEKTALMKKLGRKQLFLELSHPVEALPDSLSS FGLSLSDDRNTITYEIEDNGEQGRIADLLTALSGANIHFKDISTRQSSLEDIFVSLVG DQK" misc_feature complement(1851891..1852805) /gene="hndI" /locus_tag="AGROH133_07075" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:31326" misc_feature complement(1852167..1852793) /gene="hndI" /locus_tag="AGROH133_07075" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1852671..1852694) /gene="hndI" /locus_tag="AGROH133_07075" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1852230..1852232,1852326..1852331, 1852551..1852553,1852668..1852676,1852680..1852685)) /gene="hndI" /locus_tag="AGROH133_07075" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1852551..1852562) /gene="hndI" /locus_tag="AGROH133_07075" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1852374..1852403) /gene="hndI" /locus_tag="AGROH133_07075" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1852326..1852343) /gene="hndI" /locus_tag="AGROH133_07075" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1852308..1852319) /gene="hndI" /locus_tag="AGROH133_07075" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1852224..1852244) /gene="hndI" /locus_tag="AGROH133_07075" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(1852910..1853731) /locus_tag="AGROH133_07076" /db_xref="GeneID:10267635" CDS complement(1852910..1853731) /locus_tag="AGROH133_07076" /note="Protein of unknown function DUF81; Predicted permeases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279162.1" /db_xref="GI:325293298" /db_xref="GeneID:10267635" /translation="MPPVSEILIFASALAAAGVVAGLLAGLFGIGGGAVLVPVFYHVF GLLDVPEAVRMHLSLGTSLAIIVPTSIRSFLTHRQKGAVDIDLLKGWIVAVPLGTILA SVVAAHASSVALRLIFAFIALALAFRMIFNRASWHLGSDLPKNPVRFLVGTGIGLLSG LMGVGGGVMNNTFMTLYGRTIHQAVATSSGVGVLISLPGLLGYIWAGWGDAGLPPFST GFINWIAVALLIPITLVVAPYGARLAHALSKKQLERAFGVFLVFVAAQFFYSVYS" misc_feature complement(1852931..1853569) /locus_tag="AGROH133_07076" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene complement(1854133..1855401) /locus_tag="AGROH133_07085" /db_xref="GeneID:10267636" CDS complement(1854133..1855401) /locus_tag="AGROH133_07085" /note="Extensin-like protein C-terminus; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279163.1" /db_xref="GI:325293299" /db_xref="GeneID:10267636" /translation="MAYVSLPRRLVTLLMISTVMVSCSAEGLVPPAEVDGTTRVGAIR SSRQQGYSAPPGAVYQAERTGQATNYPAAVSQPMPEPYASQDPLLQSPQGGQGYSTLD GQHQARMAANGQSMASTTMPNQQGAANQIAEGEGGVNMDSMLGVEPVRGLAEEQDADI AEGASAQPVVDGIGTDNPVAVSPARRQQSAGQSRLIPPPPPGSSSRRQPVEEVAMLMP NDPMARDGLQSNRSAMPPGVMPSSEVACRSELRRLGVAFRDVARIADGPTCGIDYPIE LSGLASGVAIRPAVKLNCQVTLAFAKWVKFELVPSSRFRYLSGVGRITPMGGYSCRKM NSRSSNPWSEHARGNAIDIGTITLNNGKEIDVRSKNFFAFREKALLKAVRSDSCKYFS TVLGPGSDPNHWNHFHFDLRTRKSGYRHCD" misc_feature complement(1854136..1854981) /locus_tag="AGROH133_07085" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3921" /db_xref="CDD:33707" misc_feature complement(1854139..1854675) /locus_tag="AGROH133_07085" /note="Extensin-like protein C-terminus; Region: Extensin-like_C; pfam06904" /db_xref="CDD:148494" gene complement(1855706..1857520) /gene="mclA2" /locus_tag="AGROH133_07087" /db_xref="GeneID:10267637" CDS complement(1855706..1857520) /gene="mclA2" /locus_tag="AGROH133_07087" /note="methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004279164.1" /db_xref="GI:325293300" /db_xref="GeneID:10267637" /translation="MKNVTISMRLYALVALFLAILTAALTFSLFETFHEMERERKAGL ASMNETAVAILEQYYRLEQGGTLTREAAQQQAKTTIAAMRYGNGSGYFWINDMHPKMV MHPIKPEMNGSDLTANKDPNGKALFVEFVNTVKAGGQGFVDYYWPKPGAPDPVEKFSH VAGFAPWGWIVGTGVYVDDLEAVFWSNAYFNIAVCVLSGLLVIGVAAAVVRSVTRPID RIRQSMKRIADGDGEAEIEFADRRNEIGAIAKTLLVLRDSVNERSALQAREAGQQRAL EEARHGNEMALRSASERQAHAMNELGSSLEALANGDLTVELADIGGEYEKLRMDFNRA VGALHGAIEAIARTGHVVNDSASDISGATGNLSRRTEQQAAALEETAAALDEITATVR TASERANEARQMVQDTKTSAGRSGEIVRNAVDAMGRIEESSRRIGQIISVIDEIAFQT NLLALNAGVEAARAGEAGRGFAVVAQEVRELAQRSANAAKEIKTLINRSAEEVGGGVA LVRSTGDALDEIVTLVNRVDGHVNSIATAAREQATGLQEINTSVNHMDQMTQQNAAMV EETTAASQTLAEESRQLRALLSRFELGHGAGREVSRAA" misc_feature complement(1857137..1857415) /gene="mclA2" /locus_tag="AGROH133_07087" /note="Cache domain; Region: Cache_2; pfam08269" /db_xref="CDD:149365" misc_feature complement(<1856564..>1856890) /gene="mclA2" /locus_tag="AGROH133_07087" /note="two component system sensor kinase SsrA; Provisional; Region: PRK15347" /db_xref="CDD:185245" misc_feature complement(1856738..>1856890) /gene="mclA2" /locus_tag="AGROH133_07087" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(1855751..1856491) /gene="mclA2" /locus_tag="AGROH133_07087" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature complement(1855742..1856347) /gene="mclA2" /locus_tag="AGROH133_07087" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 1857772..1858086 /locus_tag="AGROH133_07090" /db_xref="GeneID:10267638" CDS 1857772..1858086 /locus_tag="AGROH133_07090" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279165.1" /db_xref="GI:325293301" /db_xref="GeneID:10267638" /translation="MSRPNFRFTHYDLKELRAGTTIEVSLSAVNNVRLMTGANFQRFT ELLDFKYLGGVAKKSPIRISIPETLHWHLVIDAEGHSGLAESSVKMLPAPSQVIQHRK AS" misc_feature 1857787..1858068 /locus_tag="AGROH133_07090" /note="Domain of unknown function (DUF1883); Region: DUF1883; pfam08980" /db_xref="CDD:192190" gene complement(1858168..1859484) /locus_tag="AGROH133_07091" /db_xref="GeneID:10267639" CDS complement(1858168..1859484) /locus_tag="AGROH133_07091" /note="ATPase family associated with various cellular activities (AAA); ATPase related to the helicase subunit of the Holliday junction resolvase" /codon_start=1 /transl_table=11 /product="recombination factor protein RarA" /protein_id="YP_004279166.1" /db_xref="GI:325293302" /db_xref="GeneID:10267639" /translation="MSDDLFAPQVPVEVANRRPLADRLRPKTLAEVTGQPHLTGEEGV LRRMIDSGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAA RTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAALLSR ARVLTFGSHDEESLGELLKRAEEAEGKPLPLTEEARASLIRMADGDGRAVLTLAEEVW RAARKDETFDTEGLTRIVQRRAPVYDKGQDGHYNLISALHKSVRGSDPDAALYYLCRM FDAGEDPLFIGRRLVRMAVEDIGLADPQALAVCNAAKDAYDYLGSPEGELALAQACVY LATAPKSNAVYTAFKSAMRAAKENGSLVPPKHILNAPTKLMKGEGYGDGYRYDHDEPD AFSGQDYFPEKMGRKTFYDPPDRGFERDIRKRLDWWAKLRRERGSR" misc_feature complement(1858186..1859430) /locus_tag="AGROH133_07091" /note="recombination factor protein RarA; Reviewed; Region: PRK13342" /db_xref="CDD:183986" misc_feature complement(1859005..1859352) /locus_tag="AGROH133_07091" /note="The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" /db_xref="CDD:99707" misc_feature complement(1859281..1859304) /locus_tag="AGROH133_07091" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(1859047..1859049,1859134..1859136, 1859278..1859301)) /locus_tag="AGROH133_07091" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(1859131..1859148) /locus_tag="AGROH133_07091" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(1859005..1859007) /locus_tag="AGROH133_07091" /note="arginine finger; other site" /db_xref="CDD:99707" misc_feature complement(1858195..1858698) /locus_tag="AGROH133_07091" /note="MgsA AAA+ ATPase C terminal; Region: MgsA_C; cl13440" /db_xref="CDD:196613" gene complement(1859481..1860887) /gene="htrA" /locus_tag="AGROH133_07092" /db_xref="GeneID:10267640" CDS complement(1859481..1860887) /gene="htrA" /locus_tag="AGROH133_07092" /EC_number="3.4.21.-" /note="Peptidase S1C, Do, Trypsin; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain" /codon_start=1 /transl_table=11 /product="serine protease" /protein_id="YP_004279167.1" /db_xref="GI:325293303" /db_xref="GeneID:10267640" /translation="MQSVLKYLSTGFLAALLLVPVGAQAQDNKTVPASHMEMQLSFAP LVKRTAGAVVNVYAERIVQRRSSPFAGDPFFEQFFGQQMPNRTEKQSSLGSGVIVTAG GLVVTNNHVIDGADDIKVALADGREFSSKVLLKDDRVDLAILQIDAKEQFPVLSLGNS DAIEVGDLVLAIGNPFGVGQTVTSGIVSGLARNQVTQGDFGFFIQTDASINPGNSGGA LMNMAGELIGINTAIFSKGGGSNGIGFAIPANLVRVFVAAAERGDANFQRPYIGATFD PVTSDVAEALGLHRARGALVVSVVKGGPAEKAGIEPGQVVTAVNGLEVEHPDALGYRL TTAGIGKSAELTLVEKGKEKKVNIALDTAPETAPRDERLLEGRNPLAGATVANLSPKL ADELRMPSQVTGVVVTDVKRGSPAYRVGFQPKDVILSLNGSDIGSTAAVEKALDDNPG FWRVEILRDGQRIRQFLR" misc_feature complement(1859487..1860770) /gene="htrA" /locus_tag="AGROH133_07092" /note="periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037" /db_xref="CDD:162670" misc_feature complement(1860144..1860602) /gene="htrA" /locus_tag="AGROH133_07092" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" misc_feature complement(1859814..1860083) /gene="htrA" /locus_tag="AGROH133_07092" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature complement(order(1859895..1859900,1859907..1859912, 1860063..1860065,1860069..1860080)) /gene="htrA" /locus_tag="AGROH133_07092" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" misc_feature complement(1859496..1859753) /gene="htrA" /locus_tag="AGROH133_07092" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature complement(order(1859562..1859567,1859574..1859579, 1859733..1859735,1859739..1859750)) /gene="htrA" /locus_tag="AGROH133_07092" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" gene 1861050..1861415 /locus_tag="AGROH133_07094" /db_xref="GeneID:10267641" CDS 1861050..1861415 /locus_tag="AGROH133_07094" /note="Uncharacterized protein conserved in bacteria, lipoprotein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279168.1" /db_xref="GI:325293304" /db_xref="GeneID:10267641" /translation="MRRPMHMKQTILASGILLACASLGSPANAASFDCTKPDLAADEK AICDNRALNDQDVKMVTTFDILTQLMAMGARDTLREEQSQWLKKRQECNADVACITSA YEERMKRLGEAFQSINRPL" misc_feature 1861146..1861379 /locus_tag="AGROH133_07094" /note="Protein of unknown function (DUF1311); Region: DUF1311; cl01530" /db_xref="CDD:194158" gene complement(1861419..1862438) /locus_tag="AGROH133_07096" /db_xref="GeneID:10267642" CDS complement(1861419..1862438) /locus_tag="AGROH133_07096" /EC_number="3.5.2.6" /note="Beta-lactamase class C and other penicillin binding proteins" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_004279169.1" /db_xref="GI:325293305" /db_xref="GeneID:10267642" /translation="MPNFSTMKRRTALGLIASLPFARLAHGQTAGNGARFSPLLNEAD GLSSLKAAIVSIDGQEVASRAYHGASLMGSTNIKSASKSVISALVGMAIDRKILAGAD QPIATILRSDFPPNPDARLERVTIGNLLSMQSGLERMSGPNYGRWVASRNWVRMALGS GFAGEPGGGMLYSTGSTHLLSAILTKASGRSTLSLARDWFRPLEGFSIGGWERDPQGI YLGGNQMAMTARSLLAFGELYRLGGVTPGGERLISQSWIDQSWQQRTNSVFNGDGYGY CWFIKEMAGETVYYAWGYGGQMLYIVPAKRLSVVMTSREDAPSARTGYRDQLHGLMEN IIRVA" misc_feature complement(1861500..1862288) /locus_tag="AGROH133_07096" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" gene complement(1862685..1864520) /gene="ilvD" /locus_tag="AGROH133_07098" /db_xref="GeneID:10267643" CDS complement(1862685..1864520) /gene="ilvD" /locus_tag="AGROH133_07098" /EC_number="4.2.1.9" /note="catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Dihydroxyacid dehydratase/phosphogluconate dehydratase" /codon_start=1 /transl_table=11 /product="dihydroxy-acid dehydratase" /protein_id="YP_004279170.1" /db_xref="GI:325293306" /db_xref="GeneID:10267643" /translation="MPVYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFT QFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIAD SVEYMVNAHCADAMVCISNCDKITPGMLNAAMRLNIPAVFVSGGPMEAGKVVLHGKTV ALDLVDAMVAAADDKISDEDVKIIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGN GSTLATHSDRKRLFVEAGHLIVDLARRYYEQDDETVLPRTIANKAAFENAMSLDIAMG GSTNTVLHILAAAHEGGVDFGMEDIDRLSRKVPCLSKVAPAKQDVHMEDVHRAGGIMR ILGELDRGGLLNRDTYTVHEATLGDAIDRWDITRTNSETVRQFFKAAPGGVPTQVAFS QSSRWDDLDTDGENGVIRSVEKPFSKDGGLAVLYGNIALDGCIVKTAGVDESILKFSG PAVVYESQDAAVKGILSNEVKAGDVVVIRYEGPKGGPGMQEMLYPTSYLKSKGLGKAC ALITDGRFSGGTSGLSIGHASPEAAQGGAIGLVRQGDLIEIDIPNRTINLKVTDAELA ARRAEQDQLGWKPAEFRKRNVTTALKAYAAFASSADKGAVRILPE" misc_feature complement(1862688..1864517) /gene="ilvD" /locus_tag="AGROH133_07098" /note="Dehydratase family; Region: ILVD_EDD; cl00340" /db_xref="CDD:185921" misc_feature complement(1862787..1864451) /gene="ilvD" /locus_tag="AGROH133_07098" /note="dihydroxy-acid dehydratase; Region: ilvD; TIGR00110" /db_xref="CDD:161713" gene 1864833..1865774 /locus_tag="AGROH133_07099" /db_xref="GeneID:10267644" CDS 1864833..1865774 /locus_tag="AGROH133_07099" /note="in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; Sulfite oxidase and related enzymes" /codon_start=1 /transl_table=11 /product="sulfite oxidase subunit YedY" /protein_id="YP_004279171.1" /db_xref="GI:325293307" /db_xref="GeneID:10267644" /translation="MPAYRPPLIPAREITPKNIYLSRRGFLGTAAGLAAIGLSGREAV ATPLAAKAGAYKLDEKLTPLDAVTSYNNFYEFGVGKSDPKENSGKFKPTPWTVKVDGL VSKPQEFGIEELMKYQLEERTYRMRCVEGWSMVIPWIGFPLAALLDKVEPLGSAKYVS FETVVRPEEMPGQSGLFQPLSWPYVEGLRLDEARHPLTILAVGLYGETLPNQNGAPIR LVVPWKYGFKGIKSIVRISLVEKQPDTTWKNSNAREYGFYSNVNPHVDHPRWSQATEQ RIGEGGFFGTQNRPTLMFNGYDEVASLYTGLDLKANY" misc_feature 1865034..1865684 /locus_tag="AGROH133_07099" /note="YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY...; Region: YedY_like_Moco; cd02107" /db_xref="CDD:29402" misc_feature order(1865043..1865057,1865214..1865216,1865319..1865321, 1865382..1865384,1865469..1865471,1865484..1865486, 1865508..1865510,1865517..1865519,1865523..1865525) /locus_tag="AGROH133_07099" /note="Moco binding site; other site" /db_xref="CDD:29402" misc_feature 1865214..1865216 /locus_tag="AGROH133_07099" /note="metal coordination site [ion binding]; other site" /db_xref="CDD:29402" gene 1865777..1866424 /locus_tag="AGROH133_07100" /db_xref="GeneID:10267645" CDS 1865777..1866424 /locus_tag="AGROH133_07100" /note="Ferric reductase-like transmembrane component, N-terminal; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_004279172.1" /db_xref="GI:325293308" /db_xref="GeneID:10267645" /translation="MALAFSLPSLPKRYQPAAIWSLYVIGLCPGLWYFYLAATGGLGF NPVKDFEHLLGIWALRFLCLGLLVTPLRDLFNINLIAYRRALGLIAFYYVLAHFSVYL VLDRGLVFSSIAADILKRPYIMFGMAGLVMLLPLALTSNRWSIRKLGSRWNTLHKLVY LVLIVGVLHFVLARKSITLEPVFYISTMVVLLGYRLVRPSIMAAKRARRASPVRT" misc_feature 1865798..1866409 /locus_tag="AGROH133_07100" /note="Ferric reductase like transmembrane component; Region: Ferric_reduct; cl01043" /db_xref="CDD:194017" gene complement(1866378..1866806) /locus_tag="AGROH133_07107" /db_xref="GeneID:10267646" CDS complement(1866378..1866806) /locus_tag="AGROH133_07107" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279173.1" /db_xref="GI:325293309" /db_xref="GeneID:10267646" /translation="MGLSRLSPPYFARIRLLAAAMMVIIGGLCLRAFGYEVGLPFVAV KYGGSVLWGAMVYLLLAAILPSRWYGYEVHIAVIVVVVVELIRLVHFPALDAFRATAA GALLLGRVFSVWNIVCYIGGIAVASFTSGRGLRALPSSPP" gene 1866864..1867736 /locus_tag="AGROH133_07113" /db_xref="GeneID:10267647" CDS 1866864..1867736 /locus_tag="AGROH133_07113" /note="Protein of unknown function DUF817; Uncharacterized integral membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279174.1" /db_xref="GI:325293310" /db_xref="GeneID:10267647" /translation="MSTATGPAATRLSVLDNLLCDTYPWGELKGIRRFVIEFLYFGIK EARACLFAGLFFISIFVVPHGGVFGIPRYDVLLIVALGIQFFMIWSRLETLDEAKAIL LFHIVGFALEVFKTSSAIQSWSYPDFAYSKVLGVPLFSGFMYAAVGSYIIQAWRLLDL RIRNYPTYWMATLIGIAIYANFFTHHFIGDYRWYIAACAIGLYSRATVVYRPYDRDRK MPLLLSFVLIGFFVWLAENISTFFGIWKYPDQIGAWSVVHIGKWSSWSLLVIMTFTIV AQLKHIKGRIHVPE" misc_feature 1866939..1867733 /locus_tag="AGROH133_07113" /note="Protein of unknown function (DUF817); Region: DUF817; cl01520" /db_xref="CDD:154448" gene complement(1868358..1868783) /gene="rplQ" /locus_tag="AGROH133_07122" /db_xref="GeneID:10267648" CDS complement(1868358..1868783) /gene="rplQ" /locus_tag="AGROH133_07122" /note="is a component of the macrolide binding site in the peptidyl transferase center; Ribosomal protein L17" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L17" /protein_id="YP_004279175.1" /db_xref="GI:325293311" /db_xref="GeneID:10267648" /translation="MRHGNSGRKLNRTASHRKAMFANMAASLITHEQIVTTLPKAKEI RPIVERLVTLGKRGDLHARRQAISQIKDQDAVRKLFDAIASRYATRNGGYLRIMKAGF RQGDNAALAVVEFVERDVDAKGAADKARVAAEAAAAEAA" misc_feature complement(1868436..1868774) /gene="rplQ" /locus_tag="AGROH133_07122" /note="Ribosomal protein L17; Region: Ribosomal_L17; cl00356" /db_xref="CDD:193783" gene complement(1868902..1869912) /gene="rpoA" /locus_tag="AGROH133_07123" /db_xref="GeneID:10267649" CDS complement(1868902..1869912) /gene="rpoA" /locus_tag="AGROH133_07123" /EC_number="2.7.7.6" /note="catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the subunit alpha is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase, subunit alpha/40 kD subunit" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit alpha" /protein_id="YP_004279176.1" /db_xref="GI:325293312" /db_xref="GeneID:10267649" /translation="MIQKNWQELIKPNKVEFTSSSRTKATLVAEPLERGFGLTLGNAL RRVLLSSLRGAAVTAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDSKRMV VRKQGPGSVTAGDIQTVGDIEILNPDHVICTLDEGAEIRMEFTVNNGKGYVPAERNRA EDAPIGLIPVDSLYSPVKKVSYKVENTREGQVLDYDKLIMTIETNGSVSGEDAVAFAA RILQDQLGVFVNFDEPQKEAEEESVTELAFNPALLKKVDELELSVRSANCLKNDNIVY IGDLIQKTEAEMLRTPNFGRKSLNEIKEVLASMGLHLGMEVPAWPPENIEDLAKRYED QY" misc_feature complement(1868968..1869894) /gene="rpoA" /locus_tag="AGROH133_07123" /note="DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182" /db_xref="CDD:179956" misc_feature complement(1869229..1869870) /gene="rpoA" /locus_tag="AGROH133_07123" /note="N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928" /db_xref="CDD:132904" misc_feature complement(order(1869229..1869234,1869238..1869243, 1869247..1869252,1869259..1869261,1869760..1869762, 1869772..1869777,1869784..1869786,1869796..1869798, 1869805..1869813,1869817..1869819,1869826..1869828, 1869862..1869864,1869868..1869870)) /gene="rpoA" /locus_tag="AGROH133_07123" /note="alphaNTD homodimer interface [polypeptide binding]; other site" /db_xref="CDD:132904" misc_feature complement(order(1869310..1869312,1869316..1869318, 1869325..1869327,1869355..1869366,1869370..1869378, 1869394..1869396,1869400..1869402,1869457..1869459, 1869508..1869510,1869652..1869654,1869670..1869672, 1869685..1869696,1869700..1869702,1869706..1869708, 1869712..1869714,1869775..1869780,1869787..1869789, 1869799..1869801,1869835..1869837)) /gene="rpoA" /locus_tag="AGROH133_07123" /note="alphaNTD - beta interaction site [polypeptide binding]; other site" /db_xref="CDD:132904" misc_feature complement(order(1869349..1869351,1869376..1869381, 1869394..1869396,1869451..1869453,1869457..1869462, 1869649..1869654,1869661..1869663,1869670..1869672, 1869706..1869708)) /gene="rpoA" /locus_tag="AGROH133_07123" /note="alphaNTD - beta' interaction site [polypeptide binding]; other site" /db_xref="CDD:132904" misc_feature complement(1868989..1869174) /gene="rpoA" /locus_tag="AGROH133_07123" /note="Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; cl11613" /db_xref="CDD:187104" gene complement(1870108..1870497) /gene="rpsK" /locus_tag="AGROH133_07124" /db_xref="GeneID:10267650" CDS complement(1870108..1870497) /gene="rpsK" /locus_tag="AGROH133_07124" /note="located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; Ribosomal protein S11" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S11" /protein_id="YP_004279177.1" /db_xref="GI:325293313" /db_xref="GeneID:10267650" /translation="MAKEAARVRRRERKNITSGVAHVNSTFNNTMITITDAQGNAIAW SSAGAKGFKGSRKSTPFAAQIAAEDCAKKAQEHGMKSLEVEVCGPGSGRESALRALQA AGFMITSIRDVTPIPHNGCRPRKKRRV" misc_feature complement(1870111..1870455) /gene="rpsK" /locus_tag="AGROH133_07124" /note="Ribosomal protein S11; Region: Ribosomal_S11; cl00332" /db_xref="CDD:193772" gene complement(1870636..1871004) /gene="rpsM" /locus_tag="AGROH133_07125" /db_xref="GeneID:10267651" CDS complement(1870636..1871004) /gene="rpsM" /locus_tag="AGROH133_07125" /note="located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; Ribosomal protein S13" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S13" /protein_id="YP_004279178.1" /db_xref="GI:325293314" /db_xref="GeneID:10267651" /translation="MARIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMDKVGLPADKR VHQLTDAEVLQIREAIDRDYQVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQR THTNARTRKGPAKAIAGKKK" misc_feature complement(1870675..1871004) /gene="rpsM" /locus_tag="AGROH133_07125" /note="Ribosomal protein S13/S18; Region: Ribosomal_S13; cl00331" /db_xref="CDD:185912" misc_feature complement(1870675..1871004) /gene="rpsM" /locus_tag="AGROH133_07125" /note="Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Region: RpsM; COG0099" /db_xref="CDD:30448" gene complement(1871312..1871902) /gene="adk" /locus_tag="AGROH133_07126" /db_xref="GeneID:10267652" CDS complement(1871312..1871902) /gene="adk" /locus_tag="AGROH133_07126" /EC_number="2.7.4.3" /note="essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; Adenylate kinase and related kinases" /codon_start=1 /transl_table=11 /product="adenylate kinase" /protein_id="YP_004279179.1" /db_xref="GI:325293315" /db_xref="GeneID:10267652" /translation="MRLIFLGPPGAGKGTQAKRLTDKYGIPQLSTGDMLRAAVSAGTE IGKRAKAVMDAGGLVSDDIVNQIVSERIEAPDCAKGFILDGYPRTVPQAKALAENMHK KNVALDAVIELKVDEEALIRRIENRVAETIAAGGTVRSDDNPEAFRKRLTEYREKTAP LSQYYSEQGELVTLDGMADVDAVTAAIERVLEKASA" misc_feature complement(1871324..1871902) /gene="adk" /locus_tag="AGROH133_07126" /note="adenylate kinase; Reviewed; Region: adk; PRK00279" /db_xref="CDD:178957" misc_feature complement(1871354..1871899) /gene="adk" /locus_tag="AGROH133_07126" /note="Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428" /db_xref="CDD:30189" misc_feature complement(order(1871627..1871629,1871639..1871644, 1871648..1871653,1871726..1871728,1871795..1871797, 1871810..1871812)) /gene="adk" /locus_tag="AGROH133_07126" /note="AMP-binding site [chemical binding]; other site" /db_xref="CDD:30189" misc_feature complement(order(1871441..1871443,1871453..1871455, 1871522..1871524,1871639..1871641,1871651..1871653, 1871795..1871797)) /gene="adk" /locus_tag="AGROH133_07126" /note="ATP-AMP (Ap5A)-binding site [chemical binding]; other site" /db_xref="CDD:30189" gene complement(1871899..1873239) /gene="secY" /locus_tag="AGROH133_07127" /db_xref="GeneID:10267653" CDS complement(1871899..1873239) /gene="secY" /locus_tag="AGROH133_07127" /note="forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase" /codon_start=1 /transl_table=11 /product="Preprotein translocase subunit SecY" /protein_id="YP_004279180.1" /db_xref="GI:325293316" /db_xref="GeneID:10267653" /translation="MASAAEQLASNLNFSTFAKAEDLKKRLWFTLAALLVYRLGTHIP LPGLNPEAYAQAFRGQANGILGLFNMFAGGAVERMAIFALGIMPYISASIIVQLMTSV VPSLEALKKEGEAGRKIINQYTRYGTVLLGTLQAYGIAVGLESGNGLVVDPGLFFRIS TVITLLGGTMFLMWLGEQITSRGIGNGISLIIFAGIAAGLPKALAGTLELGRTGALST TLILMVVIVAIGVIALIVFVERAQRRLLIQYPKRQVGNRMFQGDTSHLPLKLNTAGVI PAIFASSLLLLPATAAGFAGNTNLPGWATSIIASLQHGQPLFMALYGLLIAFFAFFYT AIVFNPKDTADNLKKHGGFIPGIRPGERTAEYIDYVLTRITVVGAVYLVFVCILPETL IARTGIPLALGGTSLLIVVSVTLDTVAQIQGHLIAQQYEGLIKKSKLRGGKRGR" misc_feature complement(1871947..1873209) /gene="secY" /locus_tag="AGROH133_07127" /note="preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204" /db_xref="CDD:181698" misc_feature complement(1871986..1872999) /gene="secY" /locus_tag="AGROH133_07127" /note="SecY translocase; Region: SecY; pfam00344" /db_xref="CDD:189510" gene complement(1873573..1874052) /gene="rplO" /locus_tag="AGROH133_07136" /db_xref="GeneID:10267654" CDS complement(1873573..1874052) /gene="rplO" /locus_tag="AGROH133_07136" /note="late assembly protein; Ribosomal protein L15" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L15" /protein_id="YP_004279181.1" /db_xref="GI:325293317" /db_xref="GeneID:10267654" /translation="MKLNEIRDNEGSTKDRIRVGRGIGSGKGKTGGRGVKGQKARSGV AINGFEGGQMPIYRRLPKRGFNNIFASEFAVVSLGRIQTAIDAKKLDASATIDAAALK AAGVIRRTKDGVRILADGELTSKVAFEVAGASKPALEKIEKAGSSIKLLAVAAEASE" misc_feature complement(1873600..1874052) /gene="rplO" /locus_tag="AGROH133_07136" /note="Ribosomal protein L18e/L15; Region: Ribosomal_L18e; cl12022" /db_xref="CDD:196303" gene complement(1874069..1874275) /gene="rpmD" /locus_tag="AGROH133_07137" /db_xref="GeneID:10267655" CDS complement(1874069..1874275) /gene="rpmD" /locus_tag="AGROH133_07137" /note="L30 binds domain II of the 23S rRNA and the 5S rRNA; Ribosomal protein L30/L7E" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L30" /protein_id="YP_004279182.1" /db_xref="GI:325293318" /db_xref="GeneID:10267655" /translation="MAKKTTEAKKTVTVEQIGSPIRRPAIQRQTLVGLGLNKMHRQRT LEDTPAVRGMIRAVQHLVRVVDEK" misc_feature complement(1874081..1874230) /gene="rpmD" /locus_tag="AGROH133_07137" /note="Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins...; Region: Ribosomal_L30; cd01658" /db_xref="CDD:100100" misc_feature complement(order(1874114..1874119,1874123..1874131, 1874138..1874143,1874156..1874158,1874165..1874167, 1874171..1874179,1874186..1874191,1874198..1874206, 1874210..1874215,1874219..1874224)) /gene="rpmD" /locus_tag="AGROH133_07137" /note="23S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:100100" gene complement(1874287..1874856) /gene="rpsE" /locus_tag="AGROH133_07138" /db_xref="GeneID:10267656" CDS complement(1874287..1874856) /gene="rpsE" /locus_tag="AGROH133_07138" /note="located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; Ribosomal protein S5" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S5" /protein_id="YP_004279183.1" /db_xref="GI:325293319" /db_xref="GeneID:10267656" /translation="MAQEKRGSRDDRQNREERDSEFVDKLVAINRVAKVVKGGRRFGF AALVVVGDQKGRVGFGHGKAREVPEAIRKATESAKRDLIFVPLRDGRTLHHDVNGRHG AGKVLLRSAKAGTGIIAGGPMRAVFETLGVHDVVAKSTGSSNPYNMVRATFDALKHQV HPKDIAAQRGLKYATLQSRRAASGNASEE" misc_feature complement(1874323..1874829) /gene="rpsE" /locus_tag="AGROH133_07138" /note="30S ribosomal protein S5; Validated; Region: rpsE; PRK00550" /db_xref="CDD:179061" misc_feature complement(1874596..1874796) /gene="rpsE" /locus_tag="AGROH133_07138" /note="Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333" /db_xref="CDD:144065" misc_feature complement(1874347..1874568) /gene="rpsE" /locus_tag="AGROH133_07138" /note="Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719" /db_xref="CDD:190724" gene complement(1875075..1875437) /gene="rplR" /locus_tag="AGROH133_07139" /db_xref="GeneID:10267657" CDS complement(1875075..1875437) /gene="rplR" /locus_tag="AGROH133_07139" /note="binds 5S rRNA along with protein L5 and L25; Ribosomal protein L18" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L18" /protein_id="YP_004279184.1" /db_xref="GI:325293320" /db_xref="GeneID:10267657" /translation="MASRKEALARRASRVRRQIKAVANGRPRLSVHRSSKNIYAQIID DVAGKTLASASTLEADLRGSLKTGADVAAAAVVGKLVAERGVKAGVKDVVFDRGAFIY HGRIKAVAEAAREGGLNF" misc_feature complement(1875084..1875392) /gene="rplR" /locus_tag="AGROH133_07139" /note="Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432" /db_xref="CDD:88603" misc_feature complement(order(1875096..1875098,1875144..1875146, 1875153..1875155,1875378..1875383,1875390..1875392)) /gene="rplR" /locus_tag="AGROH133_07139" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88603" misc_feature complement(1875390..1875392) /gene="rplR" /locus_tag="AGROH133_07139" /note="L21e interface [polypeptide binding]; other site" /db_xref="CDD:88603" misc_feature complement(order(1875123..1875125,1875156..1875158, 1875279..1875281,1875288..1875296,1875315..1875317, 1875321..1875323,1875327..1875344,1875354..1875356, 1875369..1875371,1875375..1875380,1875384..1875386)) /gene="rplR" /locus_tag="AGROH133_07139" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88603" misc_feature complement(order(1875372..1875377,1875384..1875386)) /gene="rplR" /locus_tag="AGROH133_07139" /note="L27 interface [polypeptide binding]; other site" /db_xref="CDD:88603" misc_feature complement(1875138..1875140) /gene="rplR" /locus_tag="AGROH133_07139" /note="L5 interface [polypeptide binding]; other site" /db_xref="CDD:88603" gene complement(1875450..1875983) /gene="rplF" /locus_tag="AGROH133_07140" /db_xref="GeneID:10267658" CDS complement(1875450..1875983) /gene="rplF" /locus_tag="AGROH133_07140" /note="ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; Ribosomal protein L6P/L9E" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L6" /protein_id="YP_004279185.1" /db_xref="GI:325293321" /db_xref="GeneID:10267658" /translation="MSRIGKKPVQVPAGVTANVDGQKVTAKGPKGELFFVANDDIQLK LEDNGVSVTPANNTKEARSKWGMSRTMIENIFKGVKDGYERKLEINGVGYRAALQGKN LQLALGFSHDVVYEPPVGITIAVPKPTEIIVSGINKQQVGQVAAEIREYRGPEPYKGK GVKYAEERIVRKEGKKK" misc_feature complement(1875453..1875983) /gene="rplF" /locus_tag="AGROH133_07140" /note="50S ribosomal protein L6; Validated; Region: rplF; PRK05498" /db_xref="CDD:180118" misc_feature complement(1875738..1875953) /gene="rplF" /locus_tag="AGROH133_07140" /note="Ribosomal protein L6; Region: Ribosomal_L6; pfam00347" /db_xref="CDD:109407" misc_feature complement(1875492..1875713) /gene="rplF" /locus_tag="AGROH133_07140" /note="Ribosomal protein L6; Region: Ribosomal_L6; pfam00347" /db_xref="CDD:109407" gene complement(1876027..1876425) /gene="rpsH" /locus_tag="AGROH133_07141" /db_xref="GeneID:10267659" CDS complement(1876027..1876425) /gene="rpsH" /locus_tag="AGROH133_07141" /note="binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Ribosomal protein S8" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S8" /protein_id="YP_004279186.1" /db_xref="GI:325293322" /db_xref="GeneID:10267659" /translation="MTMTDPLGDMLTRIRNGAARRKSSVSTPASSLRARVLDVLQAEG YIRGYSKVDFENGKAEFTIELKYYEGASVIREIGRVSKPGRRVYVSVKSIPQVANGLG ITILSTPKGVMADHQAREQNVGGEVLCSVF" misc_feature complement(1876030..1876422) /gene="rpsH" /locus_tag="AGROH133_07141" /note="Ribosomal protein S8; Region: Ribosomal_S8; cl00330" /db_xref="CDD:185911" gene complement(1876438..1876743) /gene="rpsN" /locus_tag="AGROH133_07142" /db_xref="GeneID:10267660" CDS complement(1876438..1876743) /gene="rpsN" /locus_tag="AGROH133_07142" /note="located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Ribosomal protein S14" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S14" /protein_id="YP_004279187.1" /db_xref="GI:325293323" /db_xref="GeneID:10267660" /translation="MAKTSAVEKNKRRRKSVAQQATKRAALKAIVMNQSLPIEDRFKA TLKLASLPRDGSKTRIRNRCEVTGRPRAFYRKLKMSRIALRELGNSGKVPGIVKSSW" misc_feature complement(1876441..1876743) /gene="rpsN" /locus_tag="AGROH133_07142" /note="Ribosomal protein S14p/S29e; Region: Ribosomal_S14; cl00355" /db_xref="CDD:193782" gene complement(1876777..1877331) /gene="rplE" /locus_tag="AGROH133_07143" /db_xref="GeneID:10267661" CDS complement(1876777..1877331) /gene="rplE" /locus_tag="AGROH133_07143" /note="part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; Ribosomal protein L5" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L5" /protein_id="YP_004279188.1" /db_xref="GI:325293324" /db_xref="GeneID:10267661" /translation="MADKYEPRLKTEYVSRIRGAMQEKFSYANVMMIPKLEKIVINMG VGEATADSKKPTIAAGDLAAIAGQKPVVTRARNSIAGFKVREGMPIGAKVTLRGARMY EFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDII VCTTATSDDEARALLTEFNFPFRH" misc_feature complement(1876783..1877313) /gene="rplE" /locus_tag="AGROH133_07143" /note="50S ribosomal protein L5; Validated; Region: rplE; PRK00010" /db_xref="CDD:178791" misc_feature complement(1877077..1877247) /gene="rplE" /locus_tag="AGROH133_07143" /note="Ribosomal protein L5; Region: Ribosomal_L5; pfam00281" /db_xref="CDD:109342" misc_feature complement(1876783..1877067) /gene="rplE" /locus_tag="AGROH133_07143" /note="ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673" /db_xref="CDD:144317" gene complement(1877324..1877632) /gene="rplX" /locus_tag="AGROH133_07144" /db_xref="GeneID:10267662" CDS complement(1877324..1877632) /gene="rplX" /locus_tag="AGROH133_07144" /note="assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Ribosomal protein L24" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L24" /protein_id="YP_004279189.1" /db_xref="GI:325293325" /db_xref="GeneID:10267662" /translation="MQKIRKGDNVVVLTGKDKGRTGEVIQVLPKEDRAVVRGVNMVKR HQRQTQAQEAGIINKEASLHISNIAIVDKDGKPTRVGFTVVDGKKVRVAKRSGEVIDG " misc_feature complement(1877330..1877632) /gene="rplX" /locus_tag="AGROH133_07144" /note="KOW motif; Region: KOW; cl00354" /db_xref="CDD:185933" gene complement(1877645..1878013) /gene="rplN" /locus_tag="AGROH133_07145" /db_xref="GeneID:10267663" CDS complement(1877645..1878013) /gene="rplN" /locus_tag="AGROH133_07145" /note="binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; Ribosomal protein L14" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L14" /protein_id="YP_004279190.1" /db_xref="GI:325293326" /db_xref="GeneID:10267663" /translation="MIQMQTNLDVADNSGARRVMCIKVLGGSKRKYASVGDIIVVSIK EAIPRGRVKKGDVMKAVVVRTAKDIRRADGSVIRFDNNAAVLIDNKKEPIGTRIFGPV PRELRAKNHMKIISLAPEVL" misc_feature complement(1877648..1878013) /gene="rplN" /locus_tag="AGROH133_07145" /note="Ribosomal protein L14p/L23e; Region: Ribosomal_L14; cl00328" /db_xref="CDD:193771" gene complement(1878248..1878484) /gene="rpsQ" /locus_tag="AGROH133_07146" /db_xref="GeneID:10267664" CDS complement(1878248..1878484) /gene="rpsQ" /locus_tag="AGROH133_07146" /note="primary binding protein; helps mediate assembly; involved in translation fidelity; Ribosomal protein S17" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S17" /protein_id="YP_004279191.1" /db_xref="GI:325293327" /db_xref="GeneID:10267664" /translation="MPKRILQGVVVSDKNEKTVVVRVERRFAHPLLQKTVRRSKKYKA HDENNQYKVGDVVSIEECAPISKDKRWTVVSAQA" misc_feature complement(1878263..1878484) /gene="rpsQ" /locus_tag="AGROH133_07146" /note="Ribosomal protein S17; Region: Ribosomal_S17; cl00351" /db_xref="CDD:189087" gene complement(1878496..1878696) /gene="rpmC" /locus_tag="AGROH133_07147" /db_xref="GeneID:10267665" CDS complement(1878496..1878696) /gene="rpmC" /locus_tag="AGROH133_07147" /note="one of the stabilizing components for the large ribosomal subunit; Ribosomal protein L29" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L29" /protein_id="YP_004279192.1" /db_xref="GI:325293328" /db_xref="GeneID:10267665" /translation="MKADEVRGLSADQLKDKLADLKKEQFNLRFQKATGQLEKSSRIN EVRKDIARVKTIARQKAAEAKA" misc_feature complement(1878517..>1878627) /gene="rpmC" /locus_tag="AGROH133_07147" /note="Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where...; Region: Ribosomal_L29_HIP; cd00427" /db_xref="CDD:88602" misc_feature complement(order(1878526..1878528,1878535..1878540, 1878547..1878552,1878559..1878561,1878571..1878573, 1878580..1878582,1878604..1878609,1878616..1878618, 1878625..1878627)) /gene="rpmC" /locus_tag="AGROH133_07147" /note="putative translocon interaction site; other site" /db_xref="CDD:88602" misc_feature complement(order(1878559..1878561,1878604..1878606, 1878616..1878618,1878625..1878627)) /gene="rpmC" /locus_tag="AGROH133_07147" /note="signal recognition particle (SRP54) interaction site; other site" /db_xref="CDD:88602" misc_feature complement(order(1878607..1878612,1878619..1878621)) /gene="rpmC" /locus_tag="AGROH133_07147" /note="L23 interface [polypeptide binding]; other site" /db_xref="CDD:88602" misc_feature complement(1878595..1878600) /gene="rpmC" /locus_tag="AGROH133_07147" /note="trigger factor interaction site; other site" /db_xref="CDD:88602" misc_feature complement(order(1878520..1878522,1878532..1878537, 1878541..1878546,1878574..1878576)) /gene="rpmC" /locus_tag="AGROH133_07147" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88602" gene complement(1878709..1879122) /gene="rplP" /locus_tag="AGROH133_07148" /db_xref="GeneID:10267666" CDS complement(1878709..1879122) /gene="rplP" /locus_tag="AGROH133_07148" /note="located in the peptidyl transferase center and may be involved in peptidyl transferase activity; Ribosomal protein L16/L10E" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L16" /protein_id="YP_004279193.1" /db_xref="GI:325293329" /db_xref="GeneID:10267666" /translation="MLQPKRTKYRKQFKGRIKGVAKGGFDLAFGEFGLKSQEPNRVNA REIEAARRAITRYMKRAGRVWIRVFPDVPVTAKPTEVRMGKGKGSVEYWACKVKPGRM MFEIDGVSEEIAREALRLGAAKLSVKTRFVQRIAE" misc_feature complement(1878727..1879056) /gene="rplP" /locus_tag="AGROH133_07148" /note="Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433" /db_xref="CDD:88606" misc_feature complement(order(1878751..1878756,1878763..1878768, 1878820..1878822,1878862..1878876,1878895..1878900, 1878910..1878912,1878916..1878918,1878922..1878930, 1878946..1878948,1878955..1878957,1878967..1878969, 1878976..1878978,1878985..1878990,1879036..1879038, 1879045..1879050,1879054..1879056)) /gene="rplP" /locus_tag="AGROH133_07148" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88606" misc_feature complement(1879006..1879011) /gene="rplP" /locus_tag="AGROH133_07148" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88606" misc_feature complement(order(1878955..1878960,1878967..1878975)) /gene="rplP" /locus_tag="AGROH133_07148" /note="putative antibiotic binding site [chemical binding]; other site" /db_xref="CDD:88606" misc_feature complement(order(1878802..1878804,1878928..1878930, 1878934..1878939,1878946..1878948)) /gene="rplP" /locus_tag="AGROH133_07148" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:88606" misc_feature complement(order(1878865..1878870,1878877..1878882)) /gene="rplP" /locus_tag="AGROH133_07148" /note="L27 interface [polypeptide binding]; other site" /db_xref="CDD:88606" gene complement(1879161..1879892) /gene="rpsC" /locus_tag="AGROH133_07149" /db_xref="GeneID:10267667" CDS complement(1879161..1879892) /gene="rpsC" /locus_tag="AGROH133_07149" /note="forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; Ribosomal protein S3" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S3" /protein_id="YP_004279194.1" /db_xref="GI:325293330" /db_xref="GeneID:10267667" /translation="MGQKINPIGFRLGINRTWDSRWYADTAEYGKLLHEDLKIRAYLI KELKQAGIAKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMTNSETHLN IVEVRKPEIDATLVAQSIAQQLERRVAFRRAMKRSVQSAMRLGAEGIKITCGGRLGGA EIARTEWYREGRVPLHTLRADIDYGTAEAETAFGICGIKVWIFKGEILEHDPMASERR GLEGDAQGPASRERGDRPDRRRENA" misc_feature complement(1879218..1879892) /gene="rpsC" /locus_tag="AGROH133_07149" /note="30S ribosomal protein S3; Reviewed; Region: rpsC; PRK00310" /db_xref="CDD:178972" misc_feature complement(1879566..1879889) /gene="rpsC" /locus_tag="AGROH133_07149" /note="K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The...; Region: 30S_S3_KH; cd02412" /db_xref="CDD:48410" misc_feature complement(1879650..1879661) /gene="rpsC" /locus_tag="AGROH133_07149" /note="G-X-X-G motif; other site" /db_xref="CDD:48410" misc_feature complement(1879287..1879538) /gene="rpsC" /locus_tag="AGROH133_07149" /note="Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189" /db_xref="CDD:189441" gene complement(1879892..1880281) /gene="rplV" /locus_tag="AGROH133_07150" /db_xref="GeneID:10267668" CDS complement(1879892..1880281) /gene="rplV" /locus_tag="AGROH133_07150" /note="binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; Ribosomal protein L22" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L22" /protein_id="YP_004279195.1" /db_xref="GI:325293331" /db_xref="GeneID:10267668" /translation="MAKAKTERRLKDNEAQAIARTLRVSPQKLNLVAALIRGKKVDRA LAELEFSRKRIAGTVKKTLESAIANAENNHDLDVDALVVAEAYVGKSITMKRFHARGR GRASRIEKPFSHLTIVVREVEEKGEAA" misc_feature complement(1879925..1880239) /gene="rplV" /locus_tag="AGROH133_07150" /note="Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336" /db_xref="CDD:48343" misc_feature complement(order(1879925..1879930,1880024..1880041, 1880066..1880083,1880144..1880149,1880153..1880158, 1880162..1880170,1880234..1880239)) /gene="rplV" /locus_tag="AGROH133_07150" /note="putative translocon binding site; other site" /db_xref="CDD:48343" misc_feature complement(order(1879949..1879966,1880000..1880002, 1880009..1880011,1880015..1880023,1880027..1880029, 1880066..1880068,1880075..1880077,1880087..1880089, 1880171..1880173,1880180..1880182,1880192..1880194, 1880201..1880209,1880213..1880215,1880222..1880224, 1880228..1880230)) /gene="rplV" /locus_tag="AGROH133_07150" /note="protein-rRNA interface [nucleotide binding]; other site" /db_xref="CDD:48343" gene complement(1880284..1880562) /gene="rpsS" /locus_tag="AGROH133_07151" /db_xref="GeneID:10267669" CDS complement(1880284..1880562) /gene="rpsS" /locus_tag="AGROH133_07151" /note="protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; Ribosomal protein S19" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S19" /protein_id="YP_004279196.1" /db_xref="GI:325293332" /db_xref="GeneID:10267669" /translation="MARSVWKGPFVDGYLLTKAEKVRESGRNEVIKIWSRRSTILPQF VGLTFGVYNGSKHVPVSVNEDMVGHKFGEFSPTRTYYGHGADKKAKRK" misc_feature complement(1880287..1880562) /gene="rpsS" /locus_tag="AGROH133_07151" /note="Ribosomal protein S19; Region: Ribosomal_S19; cl00350" /db_xref="CDD:185929" gene complement(1880578..1881414) /gene="rplB" /locus_tag="AGROH133_07152" /db_xref="GeneID:10267670" CDS complement(1880578..1881414) /gene="rplB" /locus_tag="AGROH133_07152" /note="one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; Ribosomal protein L2" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L2" /protein_id="YP_004279197.1" /db_xref="GI:325293333" /db_xref="GeneID:10267670" /translation="MALKSFNPTTPSQRQLVIVDRASLYKGKPVKALTQGLSSKGGRN NQGRITVRFQGGGHKRTYRLVDFKRRKFDVEGTVERLEYDPNRTAFIALVTYTDGEQA YILAPQRLAAGDKVIASDKAVDVKPGNTMPLQYIPVGSIIHNVEMKPGKGGQIARSAG TYVQLVGRDAGMAILRLNSGEQRLVHGSCLASIGAVSNSDHGNTNDGKAGRSRWRGKR PHVRGVVMNPVDHPHGGGEGRTSGGRHPVTPWGKPTKGKRTRSNKSTDKFIMRSRHQR KK" misc_feature complement(1880587..1881414) /gene="rplB" /locus_tag="AGROH133_07152" /note="50S ribosomal protein L2; Validated; Region: rplB; PRK09374" /db_xref="CDD:181807" misc_feature complement(1881061..1881291) /gene="rplB" /locus_tag="AGROH133_07152" /note="Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181" /db_xref="CDD:109247" misc_feature complement(1880656..1881042) /gene="rplB" /locus_tag="AGROH133_07152" /note="Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947" /db_xref="CDD:146530" gene complement(1881458..1881751) /gene="rplW" /locus_tag="AGROH133_07153" /db_xref="GeneID:10267671" CDS complement(1881458..1881751) /gene="rplW" /locus_tag="AGROH133_07153" /note="binds third domain of 23S rRNA and protein L29; part of exit tunnel; Ribosomal protein L23" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L23" /protein_id="YP_004279198.1" /db_xref="GI:325293334" /db_xref="GeneID:10267671" /translation="MTDLRHYDVIVSPSITEKSTLVSEQNQVVFNVAKSASKPEIKAA VEALFGVKVTAVNTLIRKGKTRRFRGFAGKLKDVKKAVVTLAEGQSIDVSTGL" misc_feature complement(1881461..1881733) /gene="rplW" /locus_tag="AGROH133_07153" /note="Ribosomal protein L23; Region: Ribosomal_L23; cl00326" /db_xref="CDD:185908" gene complement(1881748..1882368) /gene="rplD" /locus_tag="AGROH133_07154" /db_xref="GeneID:10267672" CDS complement(1881748..1882368) /gene="rplD" /locus_tag="AGROH133_07154" /note="L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; Ribosomal protein L4" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L4" /protein_id="YP_004279199.1" /db_xref="GI:325293335" /db_xref="GeneID:10267672" /translation="MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQ QGTHKTKTRAEVSRTGAKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPK KVRALALRHALSAKLKAEDLIIVDQLVASEAKTKALLGSFASLGLTNALVIGGAELDG NFKLAAQNIPNVDVLPVQGINVYDILRRGKLVLSKAAVEALEERFK" misc_feature complement(1881751..1882368) /gene="rplD" /locus_tag="AGROH133_07154" /note="Ribosomal protein L4/L1 family; Region: Ribosomal_L4; cl00325" /db_xref="CDD:197406" gene complement(1882381..1883022) /gene="rplC" /locus_tag="AGROH133_07155" /db_xref="GeneID:10267673" CDS complement(1882381..1883022) /gene="rplC" /locus_tag="AGROH133_07155" /note="binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; Ribosomal protein L3" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L3" /protein_id="YP_004279200.1" /db_xref="GI:325293336" /db_xref="GeneID:10267673" /translation="MRSGVIAQKVGMTRVYNDAGEHIPVTVLRMDNVQVVSQRTEDKN GYTAVQLGAGQSKVKNTTKALRGHFAAANVEPKAKLVEFRVSPENLIDIGATLTATHF QAGQLVDVTGTTIGKGFAGAMKRHNFGGGRASHGNSVSHRAHGSTGNNQDPGRVWKGK RMAGHMGQTRVTTQNLEVVSTDEDRGLILVKGAVPGSKGAWIIVRDAVKSAAK" misc_feature complement(1882387..1883022) /gene="rplC" /locus_tag="AGROH133_07155" /note="Ribosomal protein L3; Region: Ribosomal_L3; cl00324" /db_xref="CDD:189082" gene complement(1883189..1883497) /gene="rpsJ" /locus_tag="AGROH133_07156" /db_xref="GeneID:10267674" CDS complement(1883189..1883497) /gene="rpsJ" /locus_tag="AGROH133_07156" /note="Ribosomal protein S10" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S10" /protein_id="YP_004279201.1" /db_xref="GI:325293337" /db_xref="GeneID:10267674" /translation="MNGQNIRIRLKAFDHRILDASTREIVSTAKRTGASVRGPVPLPT RIEKFTVNRSPHVDKKSREQFEMRTHKRLLDIVDPTPQTVDALMKLDLAAGVDVEIKL " misc_feature complement(1883192..1883497) /gene="rpsJ" /locus_tag="AGROH133_07156" /note="Ribosomal protein S10p/S20e; Region: Ribosomal_S10; cl00314" /db_xref="CDD:193763" gene complement(1883811..1884986) /gene="tuf" /locus_tag="AGROH133_07157" /db_xref="GeneID:10267675" CDS complement(1883811..1884986) /gene="tuf" /locus_tag="AGROH133_07157" /EC_number="3.6.5.3" /note="EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; GTPases - translation elongation factors" /codon_start=1 /transl_table=11 /product="elongation factor Tu" /protein_id="YP_004279202.1" /db_xref="GI:325293338" /db_xref="GeneID:10267675" /translation="MAKSKFERNKPHVNIGTIGHVDHGKTSLTAAITKYFGEFKAYDQ IDAAPEEKARGITISTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVCS AADGPMPQTREHILLARQVGVPAIVVFLNKVDQVDDAELLELVELEVRELLSSYDFPG DDIPIVKGSALAALEDSDKKIGEDAIRELMAAVDAYIPTPERPIDQPFLMPIEDVFSI SGRGTVVTGRVERGIVKVGEEVEIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALV RGVTRDGVERGQILCKPGSVKPHKKFMAEAYILTKEEGGRHTPFFTNYRPQFYFRTTD VTGIVSLPEGTEMVMPGDNVTVEVELIVPIAMEEKLRFAIREGGRTVGAGIVASIVE" misc_feature complement(1883814..1884986) /gene="tuf" /locus_tag="AGROH133_07157" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:178823" misc_feature complement(1884387..1884956) /gene="tuf" /locus_tag="AGROH133_07157" /note="EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors; Region: EF_Tu; cd01884" /db_xref="CDD:133284" misc_feature complement(1884909..1884932) /gene="tuf" /locus_tag="AGROH133_07157" /note="G1 box; other site" /db_xref="CDD:133284" misc_feature complement(order(1884462..1884467,1884543..1884545, 1884555..1884557,1884648..1884650,1884657..1884668, 1884672..1884677,1884744..1884749,1884801..1884806, 1884885..1884890,1884897..1884899,1884906..1884911, 1884921..1884923,1884927..1884929)) /gene="tuf" /locus_tag="AGROH133_07157" /note="GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133284" misc_feature complement(order(1884474..1884482,1884585..1884587, 1884591..1884596,1884861..1884863,1884906..1884923)) /gene="tuf" /locus_tag="AGROH133_07157" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133284" misc_feature complement(1884804..1884836) /gene="tuf" /locus_tag="AGROH133_07157" /note="Switch I region; other site" /db_xref="CDD:133284" misc_feature complement(1884816..1884818) /gene="tuf" /locus_tag="AGROH133_07157" /note="G2 box; other site" /db_xref="CDD:133284" misc_feature complement(1884750..1884761) /gene="tuf" /locus_tag="AGROH133_07157" /note="G3 box; other site" /db_xref="CDD:133284" misc_feature complement(1884699..1884755) /gene="tuf" /locus_tag="AGROH133_07157" /note="Switch II region; other site" /db_xref="CDD:133284" misc_feature complement(1884585..1884596) /gene="tuf" /locus_tag="AGROH133_07157" /note="G4 box; other site" /db_xref="CDD:133284" misc_feature complement(1884474..1884482) /gene="tuf" /locus_tag="AGROH133_07157" /note="G5 box; other site" /db_xref="CDD:133284" misc_feature complement(1884105..1884365) /gene="tuf" /locus_tag="AGROH133_07157" /note="EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697" /db_xref="CDD:58088" misc_feature complement(1883829..1884098) /gene="tuf" /locus_tag="AGROH133_07157" /note="Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts)...; Region: EFTU_III; cd03707" /db_xref="CDD:58073" misc_feature complement(order(1883838..1883840,1883868..1883876, 1883994..1883996,1884048..1884056,1884060..1884062)) /gene="tuf" /locus_tag="AGROH133_07157" /note="Antibiotic Binding Site [chemical binding]; other site" /db_xref="CDD:58073" gene complement(1885053..1887152) /gene="fusA" /locus_tag="AGROH133_07158" /db_xref="GeneID:10267676" CDS complement(1885053..1887152) /gene="fusA" /locus_tag="AGROH133_07158" /EC_number="3.6.5.3" /note="EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Translation elongation factors (GTPases)" /codon_start=1 /transl_table=11 /product="translation elongation factor EF-G" /protein_id="YP_004279203.1" /db_xref="GI:325293339" /db_xref="GeneID:10267676" /translation="MAREYKIEDYRNFGIMAHIDAGKTTTTERILYYTGKSHKIGEVH DGAATMDWMEQEQERGITITSAATTTFWKGRDGKMRRFNIIDTPGHVDFTIEVERSLR VLDGAIALLDANAGVEPQTETVWRQAEKYNVPRMIFCNKMDKTGADFYRSVEMIKTRL GATAVVMQLPIGAETEFKGVIDLIEMNALIWRDESLGAQWDVVEIPEDMKAKAEEYRE KLIETVVEIDEEAMEDYLNGIMPDNEKIRSLVRRGTIDVKFHPMFCGTAFKNKGVQPL LDAVVDYLPSPLDIPAIKGIDFKTEAEIERHADDSEPLSMLAFKIMNDPFVGSLTFAR IYSGKLEKGTSVINTVKDKRERVGRMLQMHSNSREDIEEAFAGDIVALAGLKETTTGD TLCDPLKPVILERMEFPEPVIQIAIEPKTKGDQEKMGLALNRLAAEDPSFRVKTDEES GQTIIAGMGELHLDILVDRMRREFKVEATVGAPQVAYRETITRQHEEDYTHKKQSGGT GQFARVKIIFEPNPEGEEFKFESKIVGGAVPKEYIPGVQKGIESVLSSGPLAGFPMLG VKATLIDGAYHDVDSSVLAFEIASRACFREAAKKAGAQLLEPMMKVEVVTPEDYVGDV IGDLNSRRGQIQGQESRGITIVISAHVPLANMFKYVDNLRSMSQGRAQYSMTFDHYSP VPSNVAQEIQAKYSGQK" misc_feature complement(1885062..1887152) /gene="fusA" /locus_tag="AGROH133_07158" /note="elongation factor G; Reviewed; Region: PRK00007" /db_xref="CDD:178789" misc_feature complement(1886292..1887119) /gene="fusA" /locus_tag="AGROH133_07158" /note="Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved...; Region: EF-G; cd01886" /db_xref="CDD:133286" misc_feature complement(1887081..1887104) /gene="fusA" /locus_tag="AGROH133_07158" /note="G1 box; other site" /db_xref="CDD:133286" misc_feature complement(order(1886688..1886690,1886700..1886702, 1886808..1886813,1886880..1886885,1886952..1886957, 1887057..1887062,1887069..1887071,1887078..1887083, 1887093..1887095,1887099..1887101)) /gene="fusA" /locus_tag="AGROH133_07158" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133286" misc_feature complement(order(1886349..1886357,1886724..1886726, 1886730..1886735,1887078..1887089,1887093..1887095)) /gene="fusA" /locus_tag="AGROH133_07158" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133286" misc_feature complement(1886955..1887014) /gene="fusA" /locus_tag="AGROH133_07158" /note="Switch I region; other site" /db_xref="CDD:133286" misc_feature complement(1886967..1886969) /gene="fusA" /locus_tag="AGROH133_07158" /note="G2 box; other site" /db_xref="CDD:133286" misc_feature complement(1886886..1886897) /gene="fusA" /locus_tag="AGROH133_07158" /note="G3 box; other site" /db_xref="CDD:133286" misc_feature complement(1886835..1886891) /gene="fusA" /locus_tag="AGROH133_07158" /note="Switch II region; other site" /db_xref="CDD:133286" misc_feature complement(1886724..1886735) /gene="fusA" /locus_tag="AGROH133_07158" /note="G4 box; other site" /db_xref="CDD:133286" misc_feature complement(1886349..1886357) /gene="fusA" /locus_tag="AGROH133_07158" /note="G5 box; other site" /db_xref="CDD:133286" misc_feature complement(1885965..1886213) /gene="fusA" /locus_tag="AGROH133_07158" /note="EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide...; Region: EFG_mtEFG_II; cd04088" /db_xref="CDD:58095" misc_feature complement(1885347..1885694) /gene="fusA" /locus_tag="AGROH133_07158" /note="EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor...; Region: EFG_mtEFG1_IV; cd01434" /db_xref="CDD:58274" misc_feature complement(1885101..1885334) /gene="fusA" /locus_tag="AGROH133_07158" /note="EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor...; Region: EFG_mtEFG_C; cd03713" /db_xref="CDD:58065" gene complement(1887187..1887657) /gene="rpsG" /locus_tag="AGROH133_07159" /db_xref="GeneID:10267677" CDS complement(1887187..1887657) /gene="rpsG" /locus_tag="AGROH133_07159" /note="binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; Ribosomal protein S7" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S7" /protein_id="YP_004279204.1" /db_xref="GI:325293340" /db_xref="GeneID:10267677" /translation="MSRRHSAEKREINPDPKFGDLVVTKFMNAIMLHGKKSVAESIVY GAFDVVQGKTKQEPLGVFHSALDNVAPHVEVRSRRVGGATYQVPVDVRPERRQALAIR WLITAARKRNETTMVDRLSGELMDAANNRGSAVKKREDTHKMADANRAFSHYRW" misc_feature complement(1887190..1887657) /gene="rpsG" /locus_tag="AGROH133_07159" /note="Ribosomal protein S7p/S5e; Region: Ribosomal_S7; cl00313" /db_xref="CDD:193762" gene complement(1887735..1888106) /gene="rpsL" /locus_tag="AGROH133_07160" /db_xref="GeneID:10267678" CDS complement(1887735..1888106) /gene="rpsL" /locus_tag="AGROH133_07160" /note="interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; Ribosomal protein S12" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S12" /protein_id="YP_004279205.1" /db_xref="GI:325293341" /db_xref="GeneID:10267678" /translation="MPTVNQLIRKPRQAQVKRNKVPALQENPQKRGVCTRVYTTTPRK PNSALRKVAKIRLTNGFEVIGYIPGEGRNLQEHSVVMIRGGRVKDLPGVRYHIIRGVL DTQGVKNRKQRRSKYGAKRPK" misc_feature complement(1887777..1888100) /gene="rpsL" /locus_tag="AGROH133_07160" /note="S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368" /db_xref="CDD:48341" misc_feature complement(order(1888071..1888076,1888083..1888088, 1888092..1888097)) /gene="rpsL" /locus_tag="AGROH133_07160" /note="S17 interaction site [polypeptide binding]; other site" /db_xref="CDD:48341" misc_feature complement(1888095..1888097) /gene="rpsL" /locus_tag="AGROH133_07160" /note="S8 interaction site; other site" /db_xref="CDD:48341" misc_feature complement(order(1887777..1887779,1887840..1887845, 1887855..1887860,1887897..1887902,1887909..1887911, 1887933..1887935,1887954..1887962,1887966..1887971, 1888014..1888016,1888020..1888025,1888029..1888031, 1888065..1888073)) /gene="rpsL" /locus_tag="AGROH133_07160" /note="16S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:48341" misc_feature complement(order(1887843..1887845,1887975..1887980)) /gene="rpsL" /locus_tag="AGROH133_07160" /note="streptomycin interaction site [chemical binding]; other site" /db_xref="CDD:48341" misc_feature complement(1887972..1887977) /gene="rpsL" /locus_tag="AGROH133_07160" /note="23S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:48341" misc_feature complement(order(1887873..1887899,1887957..1887974)) /gene="rpsL" /locus_tag="AGROH133_07160" /note="aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site" /db_xref="CDD:48341" gene 1888637..1888930 /locus_tag="AGROH133_07161" /db_xref="GeneID:10267679" CDS 1888637..1888930 /locus_tag="AGROH133_07161" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279206.1" /db_xref="GI:325293342" /db_xref="GeneID:10267679" /translation="MTNLPDNDNGRDEPMVFIVIGKAYEHDNSEGIDIHVILRAPDDD TAVRETLNALSEEGFIEADLDQIGMLTEVPDEEPHASAYQGALEGEVAIIRFA" gene complement(1888941..1889045) /locus_tag="AGROH133_07162" /db_xref="GeneID:10267680" CDS complement(1888941..1889045) /locus_tag="AGROH133_07162" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279207.1" /db_xref="GI:325293343" /db_xref="GeneID:10267680" /translation="MAGTQDFGLGIKSWKTTALVWAGAVLSVAAHLSR" gene 1889195..1890319 /locus_tag="AGROH133_07163" /db_xref="GeneID:10267681" CDS 1889195..1890319 /locus_tag="AGROH133_07163" /note="Winged helix repressor DNA-binding; DNA-binding HTH domain-containing proteins" /codon_start=1 /transl_table=11 /product="DNA-binding HTH domain-containing protein" /protein_id="YP_004279208.1" /db_xref="GI:325293344" /db_xref="GeneID:10267681" /translation="MDNISSADIIDDIYEAALFPDRWANVIAAIGQRLDFWGGALTWG KGEDEAWLYPPNFQELMQAFIKGGWNHRNDRLTRAVREGQFSFVHDFDIFTPDEWAGL PIVRDFLMPRGLGYGVATQVAPPNHPEMTLLFERKLDRGVIGPETMAALGRLRPHIAR SLTLATGLQRQKADAITLGLNAIGAPAAVLQASGRVLSTNTLFEATKKCISTRARDRI LILDERINRLLYKALAGGSVSSLPLPTSGDGVCILHVIPLRKDALDLSPNGSAIVLIS QPSDTVADVTPLLKGLYDLTKGEARVALEILKGLSLPSVAKQLQISHETVRSNAKSIY AKTGSTGKTDLVRRLSVLTRYTIGEQEKPRDGTGHMKDQI" misc_feature <1889801..1890238 /locus_tag="AGROH133_07163" /note="Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197" /db_xref="CDD:32379" misc_feature 1890065..1890250 /locus_tag="AGROH133_07163" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cl10457" /db_xref="CDD:142561" gene complement(1890420..1894619) /gene="rpoC" /locus_tag="AGROH133_07165" /db_xref="GeneID:10267682" CDS complement(1890420..1894619) /gene="rpoC" /locus_tag="AGROH133_07165" /EC_number="2.7.7.6" /note="DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase, beta' subunit/160 kD subunit" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase beta' chain" /protein_id="YP_004279209.1" /db_xref="GI:325293345" /db_xref="GeneID:10267682" /translation="MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPET INYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRER MGHIELAAPVAHIWFLKSLPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSMKQNQL LSEEEYMIAVDEFGEDQFTAMIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKK FMKRLKIVENFMESGNRPEWMIMKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIN RNNRLKRLIELRAPGIIIRNEKRMLQESVDALFDNGRRGRVITGANKRPLKSLSDMLK GKQGRFRQNLLGKRVDYSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGY SSTVKQAKKLVEKEKPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQ LHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGHPIIVPSQDM VLGLYYLSIMNQNEPGEGMAFSDIGELHHALENKVVTLHAKIRGRFKTVDADGKPVSK IHETTPGRMLIGELLPKNVNVPFDVCNQEMTKKNISKMIDTVYRHCGQKDTVIFCDRI MQLGFAHACRAGISFGKDDMVIPDSKVKIVGDTEALVKEYEQQYNDGLITQGEKYNKV VDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIYMMSHSGARGSPNQMRQLGGM RGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLADTALKTANSGYLTRRLV DVAQDCIVNSVDCGTDKGLTMTAIVDAGQVVASLGARILGRTALDDIDNPVTGENIVK ARTLIDEADVAIIEKAGIQSVRIRSALTCEVQVGVCGVCYGRDLARGTPVNMGEAVGV IAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRNILRNSDGVLIAM GRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYTRPMMTEVEGT VHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIIIKDASGAVAKLSRG GEARFHLSVDAILSVEPGSKVFQGDVLARSPLESAKTKDITGGLPRVAELFEARRPKD HAVIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIEKGEY ILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEIT DAGDSHYIVGDNVDRIELDDNNDRLIEEGKKPAYGDPVLLGITKASLQTPSFISAASF QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEER RKGTGAGSATQMLQDMTDPAE" misc_feature complement(1893588..1894568) /gene="rpoC" /locus_tag="AGROH133_07165" /note="RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997" /db_xref="CDD:147265" misc_feature complement(1892070..1894562) /gene="rpoC" /locus_tag="AGROH133_07165" /note="DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; Region: RpoC; COG0086" /db_xref="CDD:30435" misc_feature complement(1893081..1893911) /gene="rpoC" /locus_tag="AGROH133_07165" /note="RNA polymerase Rpb1, domain 2; Region: RNA_pol_Rpb1_2; cl11591" /db_xref="CDD:196263" misc_feature complement(1892688..1893149) /gene="rpoC" /locus_tag="AGROH133_07165" /note="RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983" /db_xref="CDD:147253" misc_feature complement(<1891209..1892846) /gene="rpoC" /locus_tag="AGROH133_07165" /note="DNA-directed RNA polymerase subunit beta'; Provisional; Region: rpoC2; PRK02597" /db_xref="CDD:179447" misc_feature complement(1892337..1892603) /gene="rpoC" /locus_tag="AGROH133_07165" /note="RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000" /db_xref="CDD:147268" misc_feature complement(<1891806..1891907) /gene="rpoC" /locus_tag="AGROH133_07165" /note="Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429" /db_xref="CDD:142634" misc_feature complement(1891890..1891892) /gene="rpoC" /locus_tag="AGROH133_07165" /note="Rpb1 - Rpb6 interaction site [polypeptide binding]; other site" /db_xref="CDD:132719" misc_feature complement(1890549..>1891700) /gene="rpoC" /locus_tag="AGROH133_07165" /note="bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed; Region: PRK09603" /db_xref="CDD:181983" misc_feature complement(<1891179..1891244) /gene="rpoC" /locus_tag="AGROH133_07165" /note="Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429" /db_xref="CDD:142634" misc_feature complement(1890549..>1890995) /gene="rpoC" /locus_tag="AGROH133_07165" /note="Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655" /db_xref="CDD:132721" misc_feature complement(order(1890654..1890659,1890702..1890704)) /gene="rpoC" /locus_tag="AGROH133_07165" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:132721" misc_feature complement(order(1890552..1890554,1890564..1890569, 1890576..1890578,1890594..1890596,1890612..1890614)) /gene="rpoC" /locus_tag="AGROH133_07165" /note="Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site" /db_xref="CDD:132721" gene complement(1894800..1898936) /gene="rpoB" /locus_tag="AGROH133_07166" /db_xref="GeneID:10267683" CDS complement(1894800..1898936) /gene="rpoB" /locus_tag="AGROH133_07166" /EC_number="2.7.7.6" /note="DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase, beta subunit/140 kD subunit" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase beta chain protein" /protein_id="YP_004279210.1" /db_xref="GI:325293346" /db_xref="GeneID:10267683" /translation="MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVD EPKGGRPDEGLNAVFKSVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPL KVTLRLIVFDIDEDTGAKSIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRS PGVFFDHDKGKSHSSGKLLFAARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLL MALGMDGEEILSTFYSKASYERSGDGWRIPFQPETLKNAKVITDMIDADTGEVVVEGG KKLTPRLIRQLVDKGLKALKATDEDLYGNFLAEDIVNYSTGEIYLEAGDEIDEKTLGL ILQSGFDEIPVLNIDHVNVGAYIRNTLHADKNQNRQEALFDIYRVMRPGEPPTMDSAE AMFNSLFFDAERYDLSAVGRVKMNMRLDLDAEDTVRTLRKEDILAVVKMLVELRDGKG EIDDIDNLGNRRVRSVGELMENQYRLGLLRMERAIKERMSSIEIDTVMPQDLINAKPA AAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYG RICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTTDVIYLSAMEEAKY YVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNINLMDVSPKQLVSVAAALIPFLE NDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVARDSGAAIAARRGGVVDQVDAT RIVIRATEELDAGKSGVDIYRLQKFQRSNQNTCVNQRPLVAVGDIISKGDIIADGPST DLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSIHIEEFEVMARDTKLGP EEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAI FGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDE QAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWWMFAVEDEKAQ SELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPGDKM AGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLAWACAGM GKKIGEMLEEYRKTMDISELRTELTEIYASESHDEVKRFDDESLVKLAEEAKRGVSIA TPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLVDD KIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVETQPEDQLPDAAE " misc_feature complement(<1898304..1898852) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl04593" /db_xref="CDD:156170" misc_feature complement(<1897902..>1898039) /gene="rpoB" /locus_tag="AGROH133_07166" /note="DNA-directed RNA polymerase subunit beta'; Provisional; Region: PRK00566" /db_xref="CDD:179068" misc_feature complement(1897545..>1897862) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RNA polymerase beta subunit; Region: RNA_pol_Rpb2_1; cl04591" /db_xref="CDD:194918" misc_feature complement(<1896102..>1897694) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653" /db_xref="CDD:73223" misc_feature complement(order(1896438..1896440,1896480..1896482)) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RPB11 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature complement(order(1896282..1896284,1896288..1896296, 1896306..1896308,1896312..1896314,1896423..1896425)) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RPB12 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature complement(1894854..>1895693) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653" /db_xref="CDD:73223" misc_feature complement(order(1894854..1894856,1894860..1894862, 1894866..1894877,1894881..1894883,1894887..1894892, 1894896..1894898,1894902..1894904,1894914..1894916, 1894983..1894985,1894995..1895012,1895016..1895033, 1895037..1895039,1895043..1895048,1895052..1895054, 1895064..1895072,1895133..1895138,1895142..1895150, 1895157..1895159,1895196..1895198,1895202..1895210, 1895232..1895234,1895313..1895315,1895523..1895525, 1895535..1895537,1895550..1895552,1895559..1895561, 1895568..1895570,1895574..1895576,1895640..1895642, 1895646..1895648,1895652..1895654)) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RPB1 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature complement(order(1895226..1895228,1895628..1895630)) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RPB11 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature complement(order(1895193..1895195,1895244..1895246, 1895496..1895498,1895502..1895507,1895586..1895588, 1895625..1895627)) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RPB10 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" misc_feature complement(order(1895202..1895204,1895208..1895231, 1895601..1895606,1895610..1895612,1895619..1895627)) /gene="rpoB" /locus_tag="AGROH133_07166" /note="RPB3 interaction site [polypeptide binding]; other site" /db_xref="CDD:73223" gene complement(1899198..1899575) /gene="rplL" /locus_tag="AGROH133_07167" /db_xref="GeneID:10267684" CDS complement(1899198..1899575) /gene="rplL" /locus_tag="AGROH133_07167" /note="present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; Ribosomal protein L7/L12" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L7/L12" /protein_id="YP_004279211.1" /db_xref="GI:325293347" /db_xref="GeneID:10267684" /translation="MADLAKIVEDLSTLTVLEAAELSKLLEEKWGVSAAAPVAVAAAG GAGAAAVVEEEKTEFDVILVDAGANKINVIKEVRAITGLGLKEAKDLVEGAPKAVKEA VSKAEAADLKKKLEDAGAKVDVK" misc_feature complement(<1899294..>1899419) /gene="rplL" /locus_tag="AGROH133_07167" /note="Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387" /db_xref="CDD:100102" misc_feature complement(order(1899309..1899311,1899318..1899323, 1899342..1899344,1899351..1899356,1899363..1899368)) /gene="rplL" /locus_tag="AGROH133_07167" /note="L11 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature complement(order(1899309..1899311,1899318..1899323, 1899342..1899344,1899351..1899353,1899363..1899365)) /gene="rplL" /locus_tag="AGROH133_07167" /note="putative EF-Tu interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature complement(order(1899342..1899344,1899351..1899356, 1899363..1899365)) /gene="rplL" /locus_tag="AGROH133_07167" /note="putative EF-G interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" gene complement(1899635..1900153) /gene="rplJ" /locus_tag="AGROH133_07168" /db_xref="GeneID:10267685" CDS complement(1899635..1900153) /gene="rplJ" /locus_tag="AGROH133_07168" /note="binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; Ribosomal protein L10" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L10" /protein_id="YP_004279212.1" /db_xref="GI:325293348" /db_xref="GeneID:10267685" /translation="MERAEKREFVTELNEVFKASGSVVVAHYAGVTVAQMNDFRSKMR AAGGTVKVAKNRLAKIALQGTESEGMTDLFKGQTLIAYSVDPMIAPKVVMDFAKTNDK VVVLGGSMGATTLNAEAVKSLATLPSLDELRAKLLGLLNAPATRVATVVAAPASQLAR VFSAYAKKDEAA" misc_feature complement(1899650..1900147) /gene="rplJ" /locus_tag="AGROH133_07168" /note="Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11...; Region: Ribosomal_L10; cd05797" /db_xref="CDD:88597" misc_feature complement(order(1899974..1899976,1899983..1899994, 1900124..1900126,1900133..1900138)) /gene="rplJ" /locus_tag="AGROH133_07168" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88597" misc_feature complement(order(1899650..1899652,1899656..1899661, 1899665..1899670,1899677..1899685,1899689..1899697, 1899731..1899739,1899743..1899748,1899755..1899760, 1899767..1899769,1899815..1899817,1899824..1899826, 1899893..1899895)) /gene="rplJ" /locus_tag="AGROH133_07168" /note="Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site" /db_xref="CDD:88597" gene complement(1900511..1901206) /gene="rplA" /locus_tag="AGROH133_07169" /db_xref="GeneID:10267686" CDS complement(1900511..1901206) /gene="rplA" /locus_tag="AGROH133_07169" /note="in Escherichia coli and methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; Ribosomal protein L1" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L1" /protein_id="YP_004279213.1" /db_xref="GI:325293349" /db_xref="GeneID:10267686" /translation="MAKVAKRIQKIREGVDPNKLYVLTDAISMVKERAVAKFDETVEV SMNLGVDPRHADQMVRGVVNLPNGTGRDVRVAVFARGAKADEATAAGADVVGAEELVE IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGA VEFRVEKAGIVHAGIGKASFDAKALEENIKAFADAVIKAKPTGAKGNYVKRVAISSTM GPGVKIEPSSVTA" misc_feature complement(1900535..1901140) /gene="rplA" /locus_tag="AGROH133_07169" /note="Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that...; Region: Ribosomal_L1; cd00403" /db_xref="CDD:88601" misc_feature complement(order(1900544..1900546,1900550..1900555, 1900691..1900693,1900697..1900699,1900703..1900705, 1901066..1901068,1901072..1901074,1901078..1901080, 1901084..1901086,1901093..1901101)) /gene="rplA" /locus_tag="AGROH133_07169" /note="mRNA/rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88601" gene complement(1901209..1901640) /gene="rplK" /locus_tag="AGROH133_07170" /db_xref="GeneID:10267687" CDS complement(1901209..1901640) /gene="rplK" /locus_tag="AGROH133_07170" /note="binds directly to 23S ribosomal RNA; Ribosomal protein L11" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L11" /protein_id="YP_004279214.1" /db_xref="GI:325293350" /db_xref="GeneID:10267687" /translation="MAKKVMGQLKLQVKAGSANPSPPIGPALGQRGINIMEFCKAFNA ATQEMEKGMPIPVVITYYQDKSFTFVMKQPPMTYWLKKEAKITSGSKTPGKGAKVGSI TKAQVKTIAEAKMKDLNAADIEGAMAMVEGSARAMGLEVVG" misc_feature complement(1901212..1901640) /gene="rplK" /locus_tag="AGROH133_07170" /note="50S ribosomal protein L11; Validated; Region: rplK; PRK00140" /db_xref="CDD:178895" misc_feature complement(1901218..1901616) /gene="rplK" /locus_tag="AGROH133_07170" /note="Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349" /db_xref="CDD:100101" misc_feature complement(order(1901230..1901238,1901242..1901247, 1901254..1901259,1901266..1901268,1901278..1901286, 1901299..1901301,1901377..1901379,1901398..1901400, 1901410..1901418,1901551..1901553,1901611..1901613)) /gene="rplK" /locus_tag="AGROH133_07170" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:100101" misc_feature complement(order(1901281..1901286,1901293..1901298, 1901431..1901436,1901440..1901442,1901452..1901463, 1901467..1901469,1901611..1901613)) /gene="rplK" /locus_tag="AGROH133_07170" /note="L7/L12 interface [polypeptide binding]; other site" /db_xref="CDD:100101" misc_feature complement(order(1901551..1901553,1901563..1901565)) /gene="rplK" /locus_tag="AGROH133_07170" /note="putative thiostrepton binding site; other site" /db_xref="CDD:100101" misc_feature complement(order(1901347..1901349,1901359..1901361)) /gene="rplK" /locus_tag="AGROH133_07170" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:100101" gene complement(1901785..1902315) /gene="nusG" /locus_tag="AGROH133_07171" /db_xref="GeneID:10267688" CDS complement(1901785..1902315) /gene="nusG" /locus_tag="AGROH133_07171" /note="Modulates Rho-dependent transcription termination; Transcription antiterminator" /codon_start=1 /transl_table=11 /product="Transcription antitermination protein nusG" /protein_id="YP_004279215.1" /db_xref="GI:325293351" /db_xref="GeneID:10267688" /translation="MAARWYIVHAYSNFEKKVAESIEEKARQKGLDHLFEKILVPTEK VVEVRRGRKVDSERKFFPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDNKPVPIPDYE ADRILGQVQEGVERPKSSVSFEVGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIF GRATPVELEYSQVEKV" misc_feature complement(1901788..1902315) /gene="nusG" /locus_tag="AGROH133_07171" /note="transcription antitermination protein NusG; Validated; Region: nusG; PRK05609" /db_xref="CDD:180161" misc_feature complement(1901986..1902306) /gene="nusG" /locus_tag="AGROH133_07171" /note="Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891" /db_xref="CDD:193580" misc_feature complement(order(1901998..1902000,1902022..1902024, 1902118..1902120,1902124..1902126,1902133..1902135, 1902193..1902195,1902295..1902297)) /gene="nusG" /locus_tag="AGROH133_07171" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:193580" misc_feature complement(1901869..1901949) /gene="nusG" /locus_tag="AGROH133_07171" /note="KOW (Kyprides, Ouzounis, Woese) motif; Region: KOW; smart00739" /db_xref="CDD:128978" gene complement(1902337..1902537) /gene="secE" /locus_tag="AGROH133_07172" /db_xref="GeneID:10267689" CDS complement(1902337..1902537) /gene="secE" /locus_tag="AGROH133_07172" /note="forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; Preprotein translocase subunit SecE" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit secE" /protein_id="YP_004279216.1" /db_xref="GI:325293352" /db_xref="GeneID:10267689" /translation="MASKTNPFTFLQQVRAEASKITWPSRRETMISTAMVLVMVIFAA LFFFAADQLIGWVLSLVLNVGR" misc_feature complement(1902355..1902537) /gene="secE" /locus_tag="AGROH133_07172" /note="SecE/Sec61-gamma subunits of protein translocation complex; Region: SecE; cl00481" /db_xref="CDD:193837" gene complement(1902722..1902797) /locus_tag="AGROH133_07174" /db_xref="GeneID:10267690" tRNA complement(1902722..1902797) /locus_tag="AGROH133_07174" /product="tRNA-Trp" /db_xref="GeneID:10267690" gene complement(1903039..1903845) /locus_tag="AGROH133_07175" /db_xref="GeneID:10267691" CDS complement(1903039..1903845) /locus_tag="AGROH133_07175" /note="glycosyl transferase, family 2; Predicted glycosyltransferases" /codon_start=1 /transl_table=11 /product="glycosyl transferase family 2" /protein_id="YP_004279217.1" /db_xref="GI:325293353" /db_xref="GeneID:10267691" /translation="MSDLTVVLTSCRRPDLLIGTLDSFFSTNDYPLREFIIIEDSDDE SVWAIPERYPEQPIRVILNGINIGQHRSIDRAYSEVQTPYILHLEDDWAFPVSKVVGR GIEILKRDPQVALVQLRTYDDMPRDIRRKAQAVEDLGYWRIPPTAHRVWHSFTFNPTV KRFSCYKKLPQGYAGFRTEAEISIFYKDQGAIMAWLAETGVSHSGFGRSNYGLKKRRG WRGVAQELDRFFSLATVRKWRRSVTRNVAHFKRKYRERQLIRSDRSALEP" misc_feature complement(<1903489..1903830) /locus_tag="AGROH133_07175" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature complement(order(1903573..1903575,1903579..1903581, 1903729..1903731,1903813..1903815,1903819..1903821)) /locus_tag="AGROH133_07175" /note="active site" /db_xref="CDD:132997" gene complement(1904191..1905366) /gene="tuf" /locus_tag="AGROH133_07176" /db_xref="GeneID:10267692" CDS complement(1904191..1905366) /gene="tuf" /locus_tag="AGROH133_07176" /EC_number="3.6.5.3" /note="EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; GTPases - translation elongation factors" /codon_start=1 /transl_table=11 /product="elongation factor Tu" /protein_id="YP_004279218.1" /db_xref="GI:325293354" /db_xref="GeneID:10267692" /translation="MAKSKFERNKPHVNIGTIGHVDHGKTSLTAAITKYFGEFKAYDQ IDAAPEEKARGITISTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVCS AADGPMPQTREHILLARQVGVPAIVVFLNKVDQVDDAELLELVELEVRELLSSYDFPG DDIPIVKGSALAALEDSDKKIGEDAIRELMAAVDAYIPTPERPIDQPFLMPIEDVFSI SGRGTVVTGRVERGIVKVGEEVEIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALV RGVTRDGVERGQILCKPGSVKPHKKFMAEAYILTKEEGGRHTPFFTNYRPQFYFRTTD VTGIVSLPEGTEMVMPGDNVTVEVELIVPIAMEEKLRFAIREGGRTVGAGIVASIVE" misc_feature complement(1904194..1905366) /gene="tuf" /locus_tag="AGROH133_07176" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:178823" misc_feature complement(1904767..1905336) /gene="tuf" /locus_tag="AGROH133_07176" /note="EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors; Region: EF_Tu; cd01884" /db_xref="CDD:133284" misc_feature complement(1905289..1905312) /gene="tuf" /locus_tag="AGROH133_07176" /note="G1 box; other site" /db_xref="CDD:133284" misc_feature complement(order(1904842..1904847,1904923..1904925, 1904935..1904937,1905028..1905030,1905037..1905048, 1905052..1905057,1905124..1905129,1905181..1905186, 1905265..1905270,1905277..1905279,1905286..1905291, 1905301..1905303,1905307..1905309)) /gene="tuf" /locus_tag="AGROH133_07176" /note="GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:133284" misc_feature complement(order(1904854..1904862,1904965..1904967, 1904971..1904976,1905241..1905243,1905286..1905303)) /gene="tuf" /locus_tag="AGROH133_07176" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133284" misc_feature complement(1905184..1905216) /gene="tuf" /locus_tag="AGROH133_07176" /note="Switch I region; other site" /db_xref="CDD:133284" misc_feature complement(1905196..1905198) /gene="tuf" /locus_tag="AGROH133_07176" /note="G2 box; other site" /db_xref="CDD:133284" misc_feature complement(1905130..1905141) /gene="tuf" /locus_tag="AGROH133_07176" /note="G3 box; other site" /db_xref="CDD:133284" misc_feature complement(1905079..1905135) /gene="tuf" /locus_tag="AGROH133_07176" /note="Switch II region; other site" /db_xref="CDD:133284" misc_feature complement(1904965..1904976) /gene="tuf" /locus_tag="AGROH133_07176" /note="G4 box; other site" /db_xref="CDD:133284" misc_feature complement(1904854..1904862) /gene="tuf" /locus_tag="AGROH133_07176" /note="G5 box; other site" /db_xref="CDD:133284" misc_feature complement(1904485..1904745) /gene="tuf" /locus_tag="AGROH133_07176" /note="EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697" /db_xref="CDD:58088" misc_feature complement(1904209..1904478) /gene="tuf" /locus_tag="AGROH133_07176" /note="Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts)...; Region: EFTU_III; cd03707" /db_xref="CDD:58073" misc_feature complement(order(1904218..1904220,1904248..1904256, 1904374..1904376,1904428..1904436,1904440..1904442)) /gene="tuf" /locus_tag="AGROH133_07176" /note="Antibiotic Binding Site [chemical binding]; other site" /db_xref="CDD:58073" gene 1905799..1906431 /locus_tag="AGROH133_07177" /db_xref="GeneID:10267693" CDS 1905799..1906431 /locus_tag="AGROH133_07177" /note="Membrane protein TerC, possibly involved in tellurium resistance" /codon_start=1 /transl_table=11 /product="Integral membrane protein, TerC family" /protein_id="YP_004279219.1" /db_xref="GI:325293355" /db_xref="GeneID:10267693" /translation="MEIFTAAGFTAFMQVIAIDLVLAGDNAIVIGLAAAGLPAHLRRK AILVGIIAATVLRIGFAAVTVQLLSIVGLQLFGGLLLAWVCWKMWSELREAAGSIEDE VTDEEADLTKGHKTFFQAATQIVIADVSMSLDNVLAVAGAAQDHVTVLIIGLVVSIAL MGLAANFVAKLLHRYRWISYLGLMVIIYVALNMLYHGVIEVLPYIKPYFG" misc_feature 1905829..1906389 /locus_tag="AGROH133_07177" /note="Integral membrane protein TerC family; Region: TerC; cl10468" /db_xref="CDD:189213" gene 1906936..1907043 /locus_tag="AGROH133_07182" /db_xref="GeneID:10267694" CDS 1906936..1907043 /locus_tag="AGROH133_07182" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279220.1" /db_xref="GI:325293356" /db_xref="GeneID:10267694" /translation="MPNISREGMCWLCRRLKRVHFGAEAAARAIETANK" gene complement(1907478..1907927) /locus_tag="AGROH133_07183" /db_xref="GeneID:10267695" CDS complement(1907478..1907927) /locus_tag="AGROH133_07183" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279221.1" /db_xref="GI:325293357" /db_xref="GeneID:10267695" /translation="MINRVVILSSLALLASAAFVSPAAALTMKECSVKYQAAKADGSA KDVKWNDYRAKFCGSDAAAESAADDKQVAATTDKEPEKATIKAPKSVVFPSAVDKKYS SETPGKARLKTCVDSYRKNKDDGTLGDLKWIQKGGGYWSLCNTALKS" gene 1908252..1908578 /locus_tag="AGROH133_07186" /db_xref="GeneID:10267696" CDS 1908252..1908578 /locus_tag="AGROH133_07186" /note="BA14K-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279222.1" /db_xref="GI:325293358" /db_xref="GeneID:10267696" /translation="MLKMPKTISALALGVAISTASTVPASALSLIQPAYEQQEQAQNS DGRGYPASAFAAGKGEEASSNGYALSESEINHVKWCAARYASYHPTDNSYMAAAGIRT QCRSPN" misc_feature 1908474..1908566 /locus_tag="AGROH133_07186" /note="BA14K-like protein; Region: BA14K; pfam07886" /db_xref="CDD:149128" gene 1908698..1908892 /locus_tag="AGROH133_07188" /db_xref="GeneID:10267697" CDS 1908698..1908892 /locus_tag="AGROH133_07188" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279223.1" /db_xref="GI:325293359" /db_xref="GeneID:10267697" /translation="MMWNLEKLEQERLDLIEVITALRHTERLSTADRTSIFEKITAHM VRLSELDAEKMRIQSALEAS" gene complement(1908963..1909036) /locus_tag="AGROH133_07189" /db_xref="GeneID:10267698" tRNA complement(1908963..1909036) /locus_tag="AGROH133_07189" /product="tRNA-Gly" /db_xref="GeneID:10267698" gene complement(1909063..1909147) /locus_tag="AGROH133_07190" /db_xref="GeneID:10267699" tRNA complement(1909063..1909147) /locus_tag="AGROH133_07190" /product="tRNA-Tyr" /db_xref="GeneID:10267699" gene 1909357..1910244 /locus_tag="AGROH133_07191" /db_xref="GeneID:10267700" CDS 1909357..1910244 /locus_tag="AGROH133_07191" /EC_number="2.1.1.-" /note="RNA methyltransferase TrmH, group 3, SpoU rRNA methylase family; rRNA methylases" /codon_start=1 /transl_table=11 /product="tRNA/rRNA metyltransferase" /protein_id="YP_004279224.1" /db_xref="GI:325293360" /db_xref="GeneID:10267700" /translation="MSKDDPNDKSTRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNR GAEDWKPPQLAPDQVHLYGLHTVRAALSNPERQLIKLSVTLNAFARLDIGEADAQPFP VEIVSPQDIDKVLGPEAIHQGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAI MRSAVAFNAGAVITTIRHSPTESGVLAKSASGALELIPYIQITNLADTLGELHKLGFF SVGLDSEGPAPIEQTFTGAKIALVLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVS NAAAIALYATQQFLGKASS" misc_feature 1909453..1910235 /locus_tag="AGROH133_07191" /note="rRNA methylases [Translation, ribosomal structure and biogenesis]; Region: SpoU; COG0566" /db_xref="CDD:30912" misc_feature 1909537..1909752 /locus_tag="AGROH133_07191" /note="RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; pfam08032" /db_xref="CDD:149230" misc_feature 1909783..1910208 /locus_tag="AGROH133_07191" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene 1910321..1910713 /locus_tag="AGROH133_07192" /db_xref="GeneID:10267701" CDS 1910321..1910713 /locus_tag="AGROH133_07192" /EC_number="3.1.2.-" /note="Thioesterase superfamily" /codon_start=1 /transl_table=11 /product="Acyl-CoA hydrolase" /protein_id="YP_004279225.1" /db_xref="GI:325293361" /db_xref="GeneID:10267701" /translation="MTDLPIKPTGELTLRTLAMPADANPAGDIFGGWVMSQMDLASGI RAAERSRCRVVTAAVKEMAFELPVKIGDTLSIYTDIARLGRTSITLTVEAWAQRSRYD KLEKVTAGTFIMVAMDENGQPTPIPPTE" misc_feature 1910342..1910701 /locus_tag="AGROH133_07192" /note="Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain...; Region: BFIT_BACH; cd03442" /db_xref="CDD:48037" gene 1910720..1911313 /locus_tag="AGROH133_07193" /db_xref="GeneID:10267702" CDS 1910720..1911313 /locus_tag="AGROH133_07193" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279226.1" /db_xref="GI:325293362" /db_xref="GeneID:10267702" /translation="MEAAVNAAEAYAHIRAVMGMVVGLSLARLLTGLAGFVQHPKKER IYPLHIGWVAFLFLMLVHFWWWEHRLSATSHVLGFGAFLFLILFCSLFYFLCVLLFPS DMKEYKGYEDYFFSRKSWFFAFLAALFVTDIGDTLLKGQDYLSSLGAEYLIRTAIYVV LFTLAAFIGNRRFHRFLVIFALIYQVVWIFRTYDLLA" gene 1911342..1911434 /locus_tag="AGROH133_07200" /db_xref="GeneID:10267703" CDS 1911342..1911434 /locus_tag="AGROH133_07200" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279227.1" /db_xref="GI:325293363" /db_xref="GeneID:10267703" /translation="MKTGLVFRHRVAVTRPDKYGISLQWDSFAG" gene 1911413..1911829 /locus_tag="AGROH133_07201" /db_xref="GeneID:10267704" CDS 1911413..1911829 /locus_tag="AGROH133_07201" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279228.1" /db_xref="GI:325293364" /db_xref="GeneID:10267704" /translation="MGFIRRIMQDRSSAGAIATLAVLLFLLQGLVNGLTSGNMASAAL ATGEIICSSHMPEGGSGKPNPASNPAGKLADNCCGTLCRLASVTIAALPVSPVERADG IVRVVEVDFLDRDTVLPPPPPNLESRPRAPPPSLQM" gene 1911878..1913242 /gene="cysJ" /locus_tag="AGROH133_07204" /db_xref="GeneID:10267705" CDS 1911878..1913242 /gene="cysJ" /locus_tag="AGROH133_07204" /note="Peptidase M4, propeptide, PepSY; Uncharacterized iron-regulated membrane protein" /codon_start=1 /transl_table=11 /product="sulfite reductase" /protein_id="YP_004279229.1" /db_xref="GI:325293365" /db_xref="GeneID:10267705" /translation="MSVTTSFEGERAPAQSSSVNLYRAVWRWHFYAGLFVLPFLISLA VTGALYLFRDEFDNLIHSDLKRIEVAQNVPKALPSDILAAAVAAVPGTAVKYTTPGDP GASTEITVSTSEGKRAVYVNTYTGQVAGSLPDRGTIMWTIRYIHSLKYFGAYTRYLIE IAAGWSILLVATGIYLWWPRKQSGGVLTVRGTPKKRVFWRDTHAVTGIFVGFFIVFLA VTGMPWSGVWGAKVNEWANGSNFGYPAGVRTDVPMSGEHLDHMAKTSWSLEQAKVPES TPSATGQPIGIDAAIARFDGLGLTLGYTVVLPTKPTGVYSGSVYPDDLSKQRVVHLDQ YSGKPLIDMSYSDYGPLGKVLEWGINVHMGQQFGLANQIVLLAACVGIVLLAVSAGIM WWKRRPRGSLGVPPLPQDKRVLRGLLALLAIGGILFPLVGASLLVMLVLDLIVQSREK QRAA" misc_feature 1911935..1913239 /gene="cysJ" /locus_tag="AGROH133_07204" /note="Uncharacterized iron-regulated membrane protein [Function unknown]; Region: PiuB; COG3182" /db_xref="CDD:32995" gene complement(1913419..1913895) /locus_tag="AGROH133_07210" /db_xref="GeneID:10267706" CDS complement(1913419..1913895) /locus_tag="AGROH133_07210" /note="Protein of unknown function DUF1486; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279230.1" /db_xref="GI:325293366" /db_xref="GeneID:10267706" /translation="MNFMTRRLAIAALALAPALMAAPVLAETAKRDLVQEEANRKLVI DFYDTVFNKHEVAKGAAVIVDSYKQHNPMVPDGKKPFVDYFTGFFKENPQAKSRIVRS ATDGDLVYLHIHSTDKEGARGAAIVDIFRVTDGKITEHWDVIQPVPEKAANKNTMF" misc_feature complement(1913422..1913799) /locus_tag="AGROH133_07210" /note="Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...; Region: NTF2_like; cl09109" /db_xref="CDD:195792" gene complement(1913908..1914519) /locus_tag="AGROH133_07212" /db_xref="GeneID:10267707" CDS complement(1913908..1914519) /locus_tag="AGROH133_07212" /note="Putative NADH-flavin reductase" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_004279231.1" /db_xref="GI:325293367" /db_xref="GeneID:10267707" /translation="MAKIALIGASGNAGSRILKELSDRGHQVTAIARNPEKIASLPNV VAKKGDVFDQAGLSELLKGHDAVISAVHFTASDPVTLIEAVRASGVSRYLVVGGAGSL EIAPGQRVVDLPDFPAAYKAEATKGAEFLDRLKGEKQLDWTFLSPSAEFVPGERTGKF RIGKDSLLSNEAGSRISFEDYAIALVDEIEKPQHSRQRFTVGY" misc_feature complement(1913917..1914513) /locus_tag="AGROH133_07212" /note="biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs; Region: BVR-B_like_SDR_a; cd05244" /db_xref="CDD:187555" misc_feature complement(order(1914073..1914081,1914139..1914141, 1914226..1914234,1914304..1914312,1914367..1914369, 1914409..1914411,1914421..1914423,1914481..1914492, 1914496..1914498)) /locus_tag="AGROH133_07212" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187555" misc_feature complement(order(1913998..1914000,1914073..1914081, 1914139..1914141,1914148..1914153,1914160..1914162, 1914211..1914213,1914220..1914228,1914295..1914300)) /locus_tag="AGROH133_07212" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187555" misc_feature complement(order(1914139..1914141,1914151..1914153, 1914226..1914228)) /locus_tag="AGROH133_07212" /note="putative active site [active]" /db_xref="CDD:187555" gene 1914656..1915057 /locus_tag="AGROH133_07213" /db_xref="GeneID:10267708" CDS 1914656..1915057 /locus_tag="AGROH133_07213" /note="Helix-turn-helix, HxlR type; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="HxlR family transcriptional regulator" /protein_id="YP_004279232.1" /db_xref="GI:325293368" /db_xref="GeneID:10267708" /translation="MERAGKMPDTQTKEIFAFDQPCPIRDVLDRIGDQWSLLVLEALQ GGVLRFNELNRKIDDISKQMLSRTLKRLEEDGFIRRTLYAQVPPRVEYELTNLGRSFL VPMQLLVQWADENHVRICTARLDYANGGTGS" misc_feature 1914713..1915033 /locus_tag="AGROH133_07213" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(1915119..1915472) /locus_tag="AGROH133_07214" /db_xref="GeneID:10267709" CDS complement(1915119..1915472) /locus_tag="AGROH133_07214" /note="Protein of unknown function DUF486; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004279233.1" /db_xref="GI:325293369" /db_xref="GeneID:10267709" /translation="MPFSISPAHIWPVLMLIVSNVFMTFAWYGHLKHKGSALFLAIVA SWGIAFFEYMLAVPANRMGSEVYSTAQLKTIQEVITLAVFALFSVFWLKESITINHVI GFALIAFGASFIFRS" misc_feature complement(1915122..1915469) /locus_tag="AGROH133_07214" /note="Protein of unknown function, DUF486; Region: DUF486; cl01236" /db_xref="CDD:120496" gene 1915564..1918695 /gene="uvrB" /locus_tag="AGROH133_07219" /db_xref="GeneID:10267710" CDS 1915564..1918695 /gene="uvrB" /locus_tag="AGROH133_07219" /note="The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Helicase subunit of the DNA excision repair complex" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit B" /protein_id="YP_004279234.1" /db_xref="GI:325293370" /db_xref="GeneID:10267710" /translation="MKRNRILSKRIRPLCNVSGQILFPALRFLFVLIFSWPPLPFARD SLHISRMARSPKNSKPSNSGFEEAPQSSFEGAPLSGSVADWVKQLEAEAEAGSVETQR EVASKAGKHRKKIEIEARKEAEKATNKTAKNTTASKTARGVSIGASSDPKTRAAAGLN PVAGMDVSLEEAANLAPGAVTATVEALSALIESGNPLFKDGKMWTPHRPARPPKSEGG VTIRMNSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPA VILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQ IDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLLADL VAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQK TGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELRVRLAELEKAGRLLEAQRLEQRTRY DIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGM YRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQAGGVF AEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYL HEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDAD KEGFLRSETSLIQTIGRAARNVDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEH GITPESVKAKISDILDSVYERDHVRADISGVSGKGFADGGHLVGNNLQSHLNALEKSM RDAAADLDFEKAARLRDEIKRLKATELAVMDDPMAKEEAKSLEGGGRSKKKETSARNG SISPPAGDISGGTEDGAASANESGKSLFAKPSLDEMGPGSDTGKPLFRRNTLDEMTVG RTEKPVRGEVPGKPETETGKRFSPLMEGQPERTKDDPRPLVRGKIGAGSYEDAGEQKR KSRTKGKTGRPGR" misc_feature 1916227..1918221 /gene="uvrB" /locus_tag="AGROH133_07219" /note="excinuclease ABC subunit B; Provisional; Region: PRK05298" /db_xref="CDD:180000" misc_feature 1916308..>1916508 /gene="uvrB" /locus_tag="AGROH133_07219" /note="DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046" /db_xref="CDD:28927" misc_feature 1916335..1916349 /gene="uvrB" /locus_tag="AGROH133_07219" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28927" misc_feature 1917484..1917870 /gene="uvrB" /locus_tag="AGROH133_07219" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(1917571..1917582,1917640..1917645,1917718..1917726) /gene="uvrB" /locus_tag="AGROH133_07219" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(1917742..1917744,1917820..1917822,1917832..1917834, 1917841..1917843) /gene="uvrB" /locus_tag="AGROH133_07219" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" misc_feature 1917865..1917996 /gene="uvrB" /locus_tag="AGROH133_07219" /note="Ultra-violet resistance protein B; Region: UvrB; pfam12344" /db_xref="CDD:192995" misc_feature 1918108..1918203 /gene="uvrB" /locus_tag="AGROH133_07219" /note="UvrB/uvrC motif; Region: UVR; pfam02151" /db_xref="CDD:145355" gene 1918727..1919695 /locus_tag="AGROH133_07222" /db_xref="GeneID:10267711" CDS 1918727..1919695 /locus_tag="AGROH133_07222" /note="esterase; Predicted esterase" /codon_start=1 /transl_table=11 /product="esterase/lipase" /protein_id="YP_004279235.1" /db_xref="GI:325293371" /db_xref="GeneID:10267711" /translation="MHRKNLAALCLVFFSSPVLAGQIEDATFHSAALNAPLPVNIYRP DGTPPENGWPVLYLLHGHDGDQNSWRDLGNIEKTLDTLIAAGAIRPLVVVMPGVKNSW YVDSAAVGGPGDYETALTGDLRHQVEKTLPVRKDREGRAIAGLSMGGFGALHLAYGHE DLYGAVASLSGAIWQNVPASDLDKTPAELKLIEDSAFFHRVDRTTVTSGIVLPSTGDH FSGAFGTPFDARLFNEKNVFTLVAQHVAESQDLPATYLTVGDDDGFFLWRGAIALHET LQADNRKSELRVTDGDHVWSVWKVSIIDALKFIDGEWDKATDVAKD" misc_feature 1918733..1919677 /locus_tag="AGROH133_07222" /note="Predicted esterase [General function prediction only]; Region: COG0627" /db_xref="CDD:30972" misc_feature 1918841..>1919290 /locus_tag="AGROH133_07222" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(1919708..1920142) /locus_tag="AGROH133_07224" /db_xref="GeneID:10267712" CDS complement(1919708..1920142) /locus_tag="AGROH133_07224" /note="Protein of unknown function DUF1801; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279236.1" /db_xref="GI:325293372" /db_xref="GeneID:10267712" /translation="MAKNTDSKDAEEIASSVLIDRKIAELGNWRGETLARIRALIRKA DPDVTEEVKWRGVPVWEHAGIICTGETYKTAVKMTFAKGASLEDPAGLFNSSLEGNTR RAIDFHEGDEIDEEALVALIRAAVALNVAGKAGKKRTGNKAG" misc_feature complement(1919795..1920115) /locus_tag="AGROH133_07224" /note="Domain of unknown function (DU1801); Region: DUF1801; cl01838" /db_xref="CDD:154618" gene 1920283..1920738 /locus_tag="AGROH133_07225" /db_xref="GeneID:10267713" CDS 1920283..1920738 /locus_tag="AGROH133_07225" /note="PRC-barrel domain; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279237.1" /db_xref="GI:325293373" /db_xref="GeneID:10267713" /translation="MKINVIALAAAAALSSSVAFAQTAATAPAVGADATLSGPGITMG TKANGPLKFVNVQKTDLTASQLDGLDIYNAQNENIGEIEDVVIGDGKSVIGLVASVGG FLGIDKSYVVLDPASVAVHNDNGTWKAYVDTTKEALQNAPKLDYDKLDD" misc_feature 1920469..1920690 /locus_tag="AGROH133_07225" /note="Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to...; Region: PRCH; cl09959" /db_xref="CDD:164180" gene 1920794..1921507 /locus_tag="AGROH133_07227" /db_xref="GeneID:10267714" CDS 1920794..1921507 /locus_tag="AGROH133_07227" /note="Protein of unknown function DUF922, bacterial; Predicted secreted Zn-dependent protease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279238.1" /db_xref="GI:325293374" /db_xref="GeneID:10267714" /translation="MEFRRSIRQSLSHGACLAAQLSPIFGAQDTKDRCVPAKTLSSLT ISAMTILLSTLPLSAQSAGWKPAEQIKTYAISGDTGGALYQSIGERGPTAGVQAIAHT TFKLTWRRDYRPQPDGACVLATAKPNLTIIYTWPKAPARLPPAVAASWKTFISGVETH ERVHGEHILDMVQKIETFSTGLRAENDPKCQKVRVVLQQRLGELSNEQRQRGRDFDRD ELSPGGRVHQLILALVNGP" misc_feature 1920941..1921504 /locus_tag="AGROH133_07227" /note="Bacterial protein of unknown function (DUF922); Region: DUF922; cl02415" /db_xref="CDD:194306" gene complement(1921527..1922129) /gene="dnaJ" /locus_tag="AGROH133_07228" /db_xref="GeneID:10267715" CDS complement(1921527..1922129) /gene="dnaJ" /locus_tag="AGROH133_07228" /note="Heat shock protein DnaJ, N-terminal; DnaJ-class molecular chaperone" /codon_start=1 /transl_table=11 /product="DnaJ family molecular chaperone" /protein_id="YP_004279239.1" /db_xref="GI:325293375" /db_xref="GeneID:10267715" /translation="MIDPYVLLGVERDADEAAIKSAYRKVAKAAHPDSGGDTDQFARL QTAYELLKDPVRRKVFDDTGYDPQLADAKDLKGLLMLETLVNEFILDEREPGSFDPVA AMRRKLTDDILKSRFHILELERHRTRVRKHMDRLGRKPETDVLSSMLRARSQSIAEAI RNAEAQIEAIEQAYTMLEGYSYELESIPLSEPLLKGEAAE" misc_feature complement(1921971..1922123) /gene="dnaJ" /locus_tag="AGROH133_07228" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cd06257" /db_xref="CDD:99751" misc_feature complement(order(1921992..1921997,1922004..1922009, 1922016..1922018,1922031..1922039)) /gene="dnaJ" /locus_tag="AGROH133_07228" /note="HSP70 interaction site [polypeptide binding]; other site" /db_xref="CDD:99751" gene 1922447..1922800 /locus_tag="AGROH133_07229" /db_xref="GeneID:10267716" CDS 1922447..1922800 /locus_tag="AGROH133_07229" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279240.1" /db_xref="GI:325293376" /db_xref="GeneID:10267716" /translation="MPQTITQTVTDYVHAMAYADEGLMRDVFDPRASIVGTFQGETEW LSLEDFAEQIRKSERGLPDHDPVFEILGIDKEGDSASVKLTTRFDGMDFSEYLSLLER DGNWAIVHKLYHIKQ" misc_feature 1922453..1922788 /locus_tag="AGROH133_07229" /note="Putative lumazine-binding; Region: Lumazine_bd_2; pfam12893" /db_xref="CDD:193366" gene complement(1922856..1922931) /locus_tag="AGROH133_07230" /db_xref="GeneID:10267717" tRNA complement(1922856..1922931) /locus_tag="AGROH133_07230" /product="tRNA-Thr" /db_xref="GeneID:10267717" gene 1923139..1924878 /locus_tag="AGROH133_07231" /db_xref="GeneID:10267718" CDS 1923139..1924878 /locus_tag="AGROH133_07231" /note="diguanylate cyclase (GGDEF) domain; c-di-GMP synthetase (diguanylate cyclase, GGDEF domain)" /codon_start=1 /transl_table=11 /product="periplasmic sensor diguanylate cyclase" /protein_id="YP_004279241.1" /db_xref="GI:325293377" /db_xref="GeneID:10267718" /translation="MRASIQKIQLTGTIVIAVSSILLATLAALPSVSSYLRYRTNAQQ LSRFETALQSAWLVSAERGPANNLMGASSPDAKLVQELAAARKATDEKLVELENSFAA EIRAQPELAKSLVDTRRKLAQSREAVDQVAALPESARSYTVMSNAIFAMFKAADSVNM LRGKTARAIIKVTPNVAIDIAMTGTAGVMRDRIGRLGSYVVMSLRANRQDKLSLRAKF DTEIQSLTLLKSSLTNYTAAYLSTPRVDAAFRDIEIFYFGQALPYAQNTIAMVVPSAQ PSIREFSENYIKGMRSSSTLRDLILAETRARIERNKEQALIYGGTSLLLALIAVLVLL RLASVYRTALFRPMQSVQTQIAAIAAGDLSGALYQDKAAPEVKKMFEELDFLREQLRQ KEEMEKQQSALAEQLRTLSETDALTGVSNRRALEKTVRAILSGEEQLQALGVMIVDID HFKSINDRYGHAMGDLALQKTATLLRGALRKNDILARYGGEEFVVVLQDVSHATATAT ADRLRRLIEAQIIDEQSGLSLTASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRN RVWATYFPKVANG" misc_feature 1924375..1924842 /locus_tag="AGROH133_07231" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(1924480..1924482,1924609..1924611) /locus_tag="AGROH133_07231" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1924495..1924497,1924504..1924509,1924519..1924521, 1924531..1924533,1924597..1924599,1924603..1924614) /locus_tag="AGROH133_07231" /note="active site" /db_xref="CDD:143635" misc_feature order(1924585..1924587,1924669..1924671) /locus_tag="AGROH133_07231" /note="I-site; other site" /db_xref="CDD:143635" gene complement(1924897..1926006) /locus_tag="AGROH133_07235" /db_xref="GeneID:10267719" CDS complement(1924897..1926006) /locus_tag="AGROH133_07235" /note="Endonuclease/Exonuclease/phosphatase family; Predicted extracellular nuclease" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279242.1" /db_xref="GI:325293378" /db_xref="GeneID:10267719" /translation="MSLRLATFNIENLLTRFDFTGFRNQTRRDRAIQLFDIRDEATYQ ALESARAVSSTDDTRQLSALAIADADADILCLQEVDNMAALQAFEYGYLYRMVGNGYL QKYLVEGNDSRGIDVAVVMREQTRDGDKIEVIDIKSHAALTYRNLDLFNPALAATNQI DDKIFKRDCLEIDLRVGGKPLTLYVTHFKSMTNARDAIDARLATMPIREAEAMAVRRI IENRWGANNTRNKNFAICGDMNDYQERISISGDRRSGYSFTPVEEERSALDIFTADDF VTNPMSRRDVMDRWTLYHSRGPQEQHLCQLDYIWLSPHLAHINATRVPEIIRAGQPYR TVFPPGQEVDRYPRTGWDRPKASDHCPVVMTLDLI" misc_feature complement(1924906..>1925316) /locus_tag="AGROH133_07235" /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490" /db_xref="CDD:197411" gene complement(1926174..1927202) /locus_tag="AGROH133_07236" /db_xref="GeneID:10267720" CDS complement(1926174..1927202) /locus_tag="AGROH133_07236" /EC_number="3.6.3.30" /note="ABC transporter related; ABC-type sugar transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279243.1" /db_xref="GI:325293379" /db_xref="GeneID:10267720" /translation="MAKLILNRLTKSFGAGSKPAVDDVSLTVREGGFLALLGPSGCGK TTVLRMIAGFEQPTDGSILLGERVLADAGSMVPPERRNMAMVFQSYALWPHMSVADNA GYPLKVRGISGEKYREKVAQALAAVRLEGFADRRPAELSGGQRQRVALARCLVTEPDV VLLDEPLANLDRHLRQEMEETFREFHIRSGATMIYVTHDQAEAMALATDVAVMSQGKL LQVAPPAELYARPEGRLVGSLVGQGAILSVPMPEGSSRDIDWDALRTAMDNGGQLPRA DILVRPQDVVRDADGITCTVTSVLYEGERYALRLDLPDGQALRAYSRESVAVGDRLPV AIRAAWRL" misc_feature complement(1926186..1927202) /locus_tag="AGROH133_07236" /note="ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]; Region: MalK; COG3839" /db_xref="CDD:33631" misc_feature complement(1926480..1927187) /locus_tag="AGROH133_07236" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1927068..1927091) /locus_tag="AGROH133_07236" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(1926609..1926611,1926708..1926713, 1926939..1926941,1927065..1927073,1927077..1927082)) /locus_tag="AGROH133_07236" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(1926939..1926950) /locus_tag="AGROH133_07236" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(1926756..1926785) /locus_tag="AGROH133_07236" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(1926708..1926725) /locus_tag="AGROH133_07236" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(1926690..1926701) /locus_tag="AGROH133_07236" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(1926603..1926623) /locus_tag="AGROH133_07236" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature complement(1926183..1926371) /locus_tag="AGROH133_07236" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene complement(1927190..1928884) /gene="afuB" /locus_tag="AGROH133_07237" /db_xref="GeneID:10267721" CDS complement(1927190..1928884) /gene="afuB" /locus_tag="AGROH133_07237" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type Fe3+ transport system, permease component" /codon_start=1 /transl_table=11 /product="Ferric transport system permease protein" /protein_id="YP_004279244.1" /db_xref="GI:325293380" /db_xref="GeneID:10267721" /translation="MSRSSAYGNSQPRWLFPFVVSVVFALSALPLGRLAYTGIVSSLN GDTWRLLADPALWDAALNTLSTSFFGMLISLMIGGGFALALTLCDIRGKSILSFLFML PMMIPPQVTALSWIGMTGPSSTLLKAIGLAPPMGSPQPLYSIAGIALLLGVQHAPLVY LSLRAGLLALPQDGIEAAKLSGASPRRVLFDIILPLSTPGLIAGAAISFVSNVGNFGI PAILGIPASIFTLPTLIYSRFASFGASTFGDIAILSTMIAIISVAGLALQERAMKGRD YRIIGLSGKAATFKLSRWRVVAELVLWLVLFLMLVAPLAALVASSLAPAYGVPLSLKT VTMHAYEELLYRQSVTRTAFRNSLFLATVTSLCLLAVTVLTAYFLVRGKSRFMFLLSA LVDIPYALPGVVISVSFVLLFAAPIPLLGITLYGTIWIILLAYFSSFFAVSLKPMVSA FLQFDPSLEEAARLSGAGFWRRLKDIILPLVGPAAGASVILVFLIACNELTVSALLWS AGTQTLGVLIYNLDDSGSFDLASALSVLVVIMVIFLMLLLEILGRYLPKGVVPWRN" misc_feature complement(1927289..1928857) /gene="afuB" /locus_tag="AGROH133_07237" /note="ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178" /db_xref="CDD:31371" misc_feature complement(1928099..1928701) /gene="afuB" /locus_tag="AGROH133_07237" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1928099..1928104,1928111..1928116, 1928123..1928128,1928132..1928137,1928144..1928149, 1928177..1928182,1928222..1928227,1928234..1928245, 1928264..1928266,1928273..1928278,1928318..1928320, 1928369..1928371,1928378..1928383,1928393..1928395, 1928399..1928404,1928411..1928413,1928417..1928419, 1928423..1928428,1928537..1928539,1928543..1928548, 1928555..1928584,1928588..1928599,1928627..1928629, 1928642..1928647,1928654..1928659)) /gene="afuB" /locus_tag="AGROH133_07237" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1928228..1928245,1928537..1928581)) /gene="afuB" /locus_tag="AGROH133_07237" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1928147..1928149,1928177..1928179, 1928186..1928188,1928225..1928227,1928441..1928443, 1928537..1928539)) /gene="afuB" /locus_tag="AGROH133_07237" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1928297..1928299,1928309..1928314, 1928330..1928368)) /gene="afuB" /locus_tag="AGROH133_07237" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" misc_feature complement(1927289..1927825) /gene="afuB" /locus_tag="AGROH133_07237" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(1927295..1927300,1927328..1927333, 1927370..1927375,1927382..1927393,1927412..1927414, 1927421..1927426,1927466..1927468,1927517..1927519, 1927526..1927531,1927541..1927543,1927553..1927558, 1927565..1927567,1927571..1927573,1927577..1927582, 1927655..1927657,1927661..1927666,1927673..1927702, 1927706..1927717,1927745..1927747,1927760..1927765, 1927772..1927777)) /gene="afuB" /locus_tag="AGROH133_07237" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1927376..1927393,1927655..1927699)) /gene="afuB" /locus_tag="AGROH133_07237" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(1927298..1927300,1927328..1927330, 1927337..1927339,1927373..1927375,1927595..1927597, 1927655..1927657)) /gene="afuB" /locus_tag="AGROH133_07237" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(1927445..1927447,1927457..1927462, 1927478..1927516)) /gene="afuB" /locus_tag="AGROH133_07237" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(1928894..1929877) /gene="afuA" /locus_tag="AGROH133_07250" /db_xref="GeneID:10267722" CDS complement(1928894..1929877) /gene="afuA" /locus_tag="AGROH133_07250" /note="Bacterial extracellular solute-binding protein, family 1; ABC-type Fe3+ transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="iron-binding periplasmic protein" /protein_id="YP_004279245.1" /db_xref="GI:325293381" /db_xref="GeneID:10267722" /translation="MKTLLSAFTAIVSLGFIATAANAADLVLYTSQPNEDAQATVDGF KAANPGIEVEWVRDGTPKIMAKLMAEISAGNPVADVLLIADTVTLERMKQAGQLMAHK SPEAKNIDASLYDADGYYYSTKLITTGIMYNTAAAMKPTSWKDLAKAEAKGLVTMPSP LTSGAALIHAQTLAAANGLGWDYYKQLKANEAISGGGNGAVLKSVASGEKAYGVVVDY MPIREKAKGAPVEFVFPEEGVSAVTEPVAILKGTKHEEAAKKFVDYVLSEKGQQGFVK LGYIPARADAGMPEGFPARDKLKVLPLNAADALKNSEQDLKTFSDIFGSKG" misc_feature complement(1928900..1929760) /gene="afuA" /locus_tag="AGROH133_07250" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(1930185..1931429) /locus_tag="AGROH133_07252" /db_xref="GeneID:10267723" CDS complement(1930185..1931429) /locus_tag="AGROH133_07252" /EC_number="2.6.1.-" /note="Aminotransferase class I and II; Transcriptional regulators containing a DNA- binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs" /codon_start=1 /transl_table=11 /product="aminotransferase, class I" /protein_id="YP_004279246.1" /db_xref="GI:325293382" /db_xref="GeneID:10267723" /translation="MLDWEQIFATRSSRMKASEIRELLKLLEQPDIISFAGGIPDPAL FPAEEFQQAYAEIFSGSQVNSALQYSVSEGYKPLREWLAGEMAEIGIECTADNVFIVS GSQQGLDYLGKLFLSPKDTALVTWPTYLGALSAFNAYEPNYDQLNPGGNRTPEAYRET AAKLGGAVKFAYLSADFSNPTGETVDLAGREKVLALADELDIAVIEDAAYQSLRYDGE AVPPIMALDIARSGGIENTRTIYCGSFSKTLAPGLRVGYIVASAPVIRKLVLMKQAAD LHSSTINQIAIERVASRGFDKQVAKIKAAYSARRDAMLAALDKYMPKGTRWTKPEGGM FIWVTLPEGMDGAALLAKSIATEKVAFVPGRAFFADGSGTNTLRISFSCANEAMIEEG MKRLGRLIATAQAETTEVVPAI" misc_feature complement(1930236..1931405) /locus_tag="AGROH133_07252" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature complement(1930236..1931333) /locus_tag="AGROH133_07252" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(1930668..1930670,1930689..1930694, 1930698..1930700,1930800..1930802,1930893..1930895, 1931043..1931045,1931115..1931123)) /locus_tag="AGROH133_07252" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(1930572..1930574,1930581..1930583, 1930668..1930676,1930821..1930823,1931013..1931015, 1931112..1931114)) /locus_tag="AGROH133_07252" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(1930689..1930691) /locus_tag="AGROH133_07252" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 1931694..1932146 /locus_tag="AGROH133_07253" /db_xref="GeneID:10267724" CDS 1931694..1932146 /locus_tag="AGROH133_07253" /note="RbsD / FucU transport protein family; Fucose dissimilation pathway protein FucU" /codon_start=1 /transl_table=11 /product="fucose binding protein" /protein_id="YP_004279247.1" /db_xref="GI:325293383" /db_xref="GeneID:10267724" /translation="MLKNIDPALNADVLHALRAMGHGDTLVISDTNFPSDSVARQTTV GKVLRMDNISAARAMQAILSVLPLDTPLQPSVGRMEVMGAPDQLEPVQVEVQKEIDAA EGKSAPMYGIERFAFYEQAKKAYCVITTGETRFYGCFLLTKGVIPPGK" misc_feature 1931694..1932137 /locus_tag="AGROH133_07253" /note="RbsD / FucU transport protein family; Region: RbsD_FucU; cl00809" /db_xref="CDD:193943" gene 1932256..1933287 /locus_tag="AGROH133_07254" /db_xref="GeneID:10267725" CDS 1932256..1933287 /locus_tag="AGROH133_07254" /codon_start=1 /transl_table=11 /product="endonuclease/exonuclease/phosphatase" /protein_id="YP_004279248.1" /db_xref="GI:325293384" /db_xref="GeneID:10267725" /translation="MTQYVLAFWNVENLFAPEGYPAREPWIAERLKNDLKGWTEDLFK TKLRQLGLIIRQIGGAGPDLLGVCEVENRFVLETLAEHLNDLMPERAYRVVHADSSKD QRGIDTAFIYDSKKLLINETEIFSHFVMRRTGTRDITQCTFITKGGRQLIALSNHWPS RSGGAVESAGFRMTAGETLGYWHQRIREEKGNDIAVVAFGDFNDDPSDASLRYHANST RERDDVESSQSAMFYNLTWNYLRQQVVDSVGSARTIYGTLYFNGDANIFDQILVSRSL LNGSSGFAVREETAKIEAIAAMVSHSKNEGPIRFGLSKGDAVKNVNLGGFSDHFPVSV IIEEADAIV" misc_feature 1932271..1933089 /locus_tag="AGROH133_07254" /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490" /db_xref="CDD:197411" misc_feature order(1932283..1932285,1932460..1932462,1932724..1932726, 1932856..1932858,1932862..1932864,1933057..1933059) /locus_tag="AGROH133_07254" /note="putative catalytic site [active]" /db_xref="CDD:197306" misc_feature 1932460..1932462 /locus_tag="AGROH133_07254" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197306" misc_feature order(1932724..1932726,1932862..1932864) /locus_tag="AGROH133_07254" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197306" gene complement(1933361..1934380) /gene="ilvC" /locus_tag="AGROH133_07255" /db_xref="GeneID:10267726" CDS complement(1933361..1934380) /gene="ilvC" /locus_tag="AGROH133_07255" /EC_number="1.1.1.86" /note="catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis" /codon_start=1 /transl_table=11 /product="Ketol-acid reductoisomerase" /protein_id="YP_004279249.1" /db_xref="GI:325293385" /db_xref="GeneID:10267726" /translation="MRVYYDRDADLNLIKSKNVVIVGYGSQGRAHALNLKDSGAKNVV IALKAGSPTVKKAEADGFKVMTVAEAAKWGDLLMMATPDELQADIYKADIAGNIRDGA AIAFAHGLNVHFGLIEPKASLDVVMIAPKGPGHTVRGEYQKGGGVPCLVAVHQNASGN ALELALSYACGVGGGRSGIIETNFKEECETDLFGEQVVLCGGLVELIRAGFETLVEAG YAPEMAYFECLHEVKLIVDLIYEGGIANMNYSISNTAEWGEYVTGPRIITADTKAEMK RVLHDIQTGKFTTEWMQEWKAGGARFKGIRRNNDAHQIEEVGAKLRGMMPWIGKNKLV DKAVN" misc_feature complement(1933391..1934380) /gene="ilvC" /locus_tag="AGROH133_07255" /note="ketol-acid reductoisomerase; Provisional; Region: PRK05479" /db_xref="CDD:180113" misc_feature complement(<1934066..>1934344) /gene="ilvC" /locus_tag="AGROH133_07255" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(1934114..1934116,1934138..1934143, 1934234..1934242,1934300..1934308,1934312..1934314)) /gene="ilvC" /locus_tag="AGROH133_07255" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:29522" misc_feature complement(1933394..1933831) /gene="ilvC" /locus_tag="AGROH133_07255" /note="Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450" /db_xref="CDD:110451" gene complement(1934425..1935078) /locus_tag="AGROH133_07256" /db_xref="GeneID:10267727" CDS complement(1934425..1935078) /locus_tag="AGROH133_07256" /note="Tetracycline transcriptional regulator, TetR-related, C-terminal; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_004279250.1" /db_xref="GI:325293386" /db_xref="GeneID:10267727" /translation="MASDPITAQEFSPRQNAVLDQALRLLVEGGEKALTTSGLARAAN CSKESLYKWFGDRDGLLAAMITFQQSKVRTFEKAGDRVSAPQLADHLEVFAHDLLDVL AGDVSLALNRLAIGQASRDGSKLGDLLLERGRRQIDRRARGLIEAGRRSGYLRFDDAE EAYRSFYGLIVSDLHVRMLLGEAPDKDFSARAKKAVVAFLTLYGTEKVHSELGGKVA" misc_feature complement(1934473..1935075) /locus_tag="AGROH133_07256" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(1934887..1935027) /locus_tag="AGROH133_07256" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(1935231..1936139) /locus_tag="AGROH133_07258" /db_xref="GeneID:10267728" CDS complement(1935231..1936139) /locus_tag="AGROH133_07258" /note="AraC-type transcriptional regulator, N-terminal; AraC-type DNA-binding domain-containing proteins" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="YP_004279251.1" /db_xref="GI:325293387" /db_xref="GeneID:10267728" /translation="MTMPFNLYQEIASIAARHATRDGEVQTAIETLGISRRSTPSAPC HGSYRPCLAMVIQGSKSVQLGTDTINYGAGDYLLTSLDLPVAWRVVEASEEVPHFCIG LAIDSEKLLDLMSRMPIERPQEPVSGQRGIVVNAATPELLDAAIRLMRLLDRPADIAA MAPLIEQEILYRILTGPAGGQLMNIVAAGSHGNRIARAISWLRENFARQLRIEELAEH IGMSVSSFHHHFKTITAMTPIQYQKQLRLHEARRLMLLERLDAGTAGHRVGYQSPSQF SREYSRFYGMSPSRDVDASREISAAG" misc_feature complement(1935594..1936061) /locus_tag="AGROH133_07258" /note="AraC-type transcriptional regulator N-terminus; Region: AraC_N; pfam06719" /db_xref="CDD:148365" misc_feature complement(1935240..1935620) /locus_tag="AGROH133_07258" /note="AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:32389" misc_feature complement(1935411..1935536) /locus_tag="AGROH133_07258" /note="Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165" /db_xref="CDD:143933" gene 1936327..1937373 /gene="adh" /locus_tag="AGROH133_07260" /db_xref="GeneID:10267729" CDS 1936327..1937373 /gene="adh" /locus_tag="AGROH133_07260" /EC_number="1.1.1.2" /note="Alcohol dehydrogenase superfamily, zinc-containing; Zn-dependent alcohol dehydrogenases" /codon_start=1 /transl_table=11 /product="NADP-dependent alcohol dehydrogenase" /protein_id="YP_004279252.1" /db_xref="GI:325293388" /db_xref="GeneID:10267729" /translation="MAIARGYAATDASKPLTPFTFERREPNDDDVVIDIKYAGICHSD IHTVRNEWKNAVFPIVPGHEIAGVVKAVGSKVTKFKVGDHVGVGCFVDSCVGCATRDL DNEHYMPGLVQTYNDVDPNTKTATHGGYSDSIVVKEGYVLSIPDNLPLDASAPLLCAG ITLYSPLRRWNAGPGQKVAIVGMGGLGHMGVKLGAAMGADVTVLSQTLSKKEDGLKLG AKEYYATSDASTFEKLAGTFDLIICTAGVAIDWNAYLGLLKPKGSMVVVGAPEHAIPV HAFSLIIGAKSLSGSMIGSIKETQEMLDFCGEHDIVSEIETINIQDVNEAYERVLKSD VRYRFVIDMASLDA" misc_feature 1936327..1937361 /gene="adh" /locus_tag="AGROH133_07260" /note="Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064" /db_xref="CDD:31264" misc_feature 1936339..1937352 /gene="adh" /locus_tag="AGROH133_07260" /note="Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283" /db_xref="CDD:176186" misc_feature order(1936447..1936455,1936462..1936464,1936798..1936800, 1936810..1936812,1936870..1936887,1936939..1936944, 1936954..1936956,1936999..1937001,1937056..1937061, 1937065..1937067,1937125..1937130,1937197..1937205) /gene="adh" /locus_tag="AGROH133_07260" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature order(1936447..1936449,1936453..1936455,1936513..1936515, 1936591..1936593,1936798..1936800,1937203..1937205) /gene="adh" /locus_tag="AGROH133_07260" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature order(1936447..1936449,1936513..1936515,1936798..1936800) /gene="adh" /locus_tag="AGROH133_07260" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature order(1936606..1936608,1936615..1936617,1936624..1936626, 1936648..1936650) /gene="adh" /locus_tag="AGROH133_07260" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature order(1936645..1936647,1936819..1936821,1936831..1936833, 1937107..1937109,1937122..1937130,1937134..1937136, 1937161..1937163,1937167..1937172,1937179..1937202) /gene="adh" /locus_tag="AGROH133_07260" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176186" gene complement(1937520..1938785) /gene="ndh" /locus_tag="AGROH133_07261" /db_xref="GeneID:10267730" CDS complement(1937520..1938785) /gene="ndh" /locus_tag="AGROH133_07261" /EC_number="1.6.99.3" /note="NADH dehydrogenase, FAD-containing subunit" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase" /protein_id="YP_004279253.1" /db_xref="GI:325293389" /db_xref="GeneID:10267730" /translation="MQEHHVVVVGGGFGGLQMVHGLEGAPVRITLIDRRNHHLFQPLL YQVATTALATSEIAWPIRHLYRDRKEVTTLLAEVNGVDRDARTVHLSSGQVIGFDTLV LATGARHAYFGRDEWERAAPGLKTLEDATTIRRRLLLAFERAELATNEEERQAQLTFV IIGAGPTGVEMAGMIAELAHKALPPEFRNVDTRKSRVLLVEAGPRVLPVFTDDLSAYA KQALEKLGVEVLLGTPVTACTDEGVTVGETFYPCRTVVWAAGVQASPAAKWLNAAADR AGRAIVGPHLNLEDDPNIFVIGDTAAVNQENGRPVPGIAPAAKQQGAHVAKVIKARLS GEPEPAPFRYSHQGNLATIGKRAAVIDFGRFKLKGVLAWWIWGLAHIYFLIGTRSRLA VAWSWLWIYLSGQHSARLITQKETLKDEA" misc_feature complement(1937562..1938707) /gene="ndh" /locus_tag="AGROH133_07261" /note="NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252" /db_xref="CDD:31444" misc_feature complement(1938039..1938308) /gene="ndh" /locus_tag="AGROH133_07261" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene complement(1938857..1939612) /gene="pdxJ" /locus_tag="AGROH133_07263" /db_xref="GeneID:10267731" CDS complement(1938857..1939612) /gene="pdxJ" /locus_tag="AGROH133_07263" /EC_number="2.6.99.2" /note="involved in the de novo synthesis of pyridoxine (Vitamin B6); Pyridoxal phosphate biosynthesis protein" /codon_start=1 /transl_table=11 /product="Pyridoxine 5'-phosphate synthase" /protein_id="YP_004279254.1" /db_xref="GI:325293390" /db_xref="GeneID:10267731" /translation="MPAKLSVNLNAIAMLRNRRDLPWPDVAHFGHIALAAGASGLTVH PRPDQRHIRFSDLPVLRALIDDSFPSAEFNIEGYPTEDFLVLCEQTQPEQVTLVPDDP SQATSDHGWDFRKHAVFLREAVGRLKAGGMRVSLFADGDGEREAVELAAETGAARIEL YTGPYGGCFDDPQKGDALLEKLGQTADYAAALGLAVNAGHDLTVANLPKLMKRIPYLA EVSIGHGLTADALEYGMAETVRRFCRACGQAIS" misc_feature complement(1938875..1939603) /gene="pdxJ" /locus_tag="AGROH133_07263" /note="Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the...; Region: PNPsynthase; cd00003" /db_xref="CDD:58644" misc_feature complement(order(1938941..1938946,1939010..1939015, 1939136..1939138,1939202..1939204,1939283..1939285, 1939292..1939297,1939385..1939387,1939460..1939465, 1939475..1939477,1939481..1939483,1939556..1939558, 1939580..1939585,1939589..1939591)) /gene="pdxJ" /locus_tag="AGROH133_07263" /note="active site" /db_xref="CDD:58644" misc_feature complement(order(1938950..1938952,1938956..1938961, 1939013..1939015,1939022..1939024,1939136..1939138, 1939142..1939144,1939202..1939204,1939208..1939210, 1939325..1939327,1939331..1939333,1939385..1939387, 1939391..1939393,1939397..1939399,1939487..1939489, 1939589..1939591)) /gene="pdxJ" /locus_tag="AGROH133_07263" /note="hydrophilic channel; other site" /db_xref="CDD:58644" misc_feature complement(order(1939112..1939117,1939556..1939558)) /gene="pdxJ" /locus_tag="AGROH133_07263" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:58644" misc_feature complement(order(1939013..1939015,1939136..1939138, 1939385..1939387,1939481..1939483)) /gene="pdxJ" /locus_tag="AGROH133_07263" /note="catalytic residues [active]" /db_xref="CDD:58644" misc_feature complement(1939283..1939315) /gene="pdxJ" /locus_tag="AGROH133_07263" /note="active site lid [active]" /db_xref="CDD:58644" gene 1939846..1940541 /locus_tag="AGROH133_07264" /db_xref="GeneID:10267732" CDS 1939846..1940541 /locus_tag="AGROH133_07264" /note="DNA binding; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MerR family" /protein_id="YP_004279255.1" /db_xref="GI:325293391" /db_xref="GeneID:10267732" /translation="MQNGRMPFEHGDEDKPNLRISSFLPDISLPSSLPAEPVPIADMA NIFGVTHRTLHFYEEKALLTSKRIGQMRVYSHRNVQRMAVINVCREVGISVAAITDIM EKLARSLSQEEADEIFHSALRQRKRELTAERSTLQRQAQQIEELLATDNDADGLDAAE RAPGKDIALTDNERKCLELMAEGYAPVRLARALGLSGNDLNELEAKIIGKFSASNRFQ AVAKAVLLGVIRA" misc_feature 1939960..1940304 /locus_tag="AGROH133_07264" /note="Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789" /db_xref="CDD:31132" misc_feature 1939963..1940265 /locus_tag="AGROH133_07264" /note="Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators; Region: HTH_MerR-like; cd00592" /db_xref="CDD:133378" misc_feature order(1939963..1939968,1940008..1940010,1940053..1940061) /locus_tag="AGROH133_07264" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133378" misc_feature order(1940095..1940097,1940104..1940106,1940116..1940121, 1940146..1940148,1940209..1940211,1940221..1940223, 1940239..1940241,1940251..1940253,1940260..1940265) /locus_tag="AGROH133_07264" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133378" misc_feature 1940350..1940532 /locus_tag="AGROH133_07264" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cl10457" /db_xref="CDD:142561" gene complement(1940649..1941776) /locus_tag="AGROH133_07266" /db_xref="GeneID:10267733" CDS complement(1940649..1941776) /locus_tag="AGROH133_07266" /EC_number="3.1.11.5" /note="ATP-dependent exoDNAse (exonuclease V), subunit alpha - helicase superfamily I member" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease V" /protein_id="YP_004279256.1" /db_xref="GI:325293392" /db_xref="GeneID:10267733" /translation="MLFSPQQDEALKAVSRWLKEGRTPVFRLFGYAGTGKTTLAKHFA ENVDGEVLFAAFTGKAAQVLRSRGATNARTIHSLIYRPRGEETVEDEETGKTSVAPMF SINRQSPLAKAALIIIDECSMVDEQLGKDLMSFGTPILVLGDPGQLPPVSGGGFFTEQ EPDYLLSEIHRQAKDNPIIHLAMDVREGREIMRGDYGAAQVISKSEVTQSLVLDADQV LVGTNRTRRRYNQRLRELKGFTADYPQSGDKLVCLRNDPAKGLLNGSLWQVMSSSRET VKPGINLMIRPEDDDMDRGAAKIKLLKAAFEDVETEIPWTTRKRYDEFDFGYALTVHK AQGSQWNNVVLFDESYAFRDSRERWLYTAITRAAETLTIVR" misc_feature complement(<1940658..1941776) /locus_tag="AGROH133_07266" /note="ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]; Region: RecD; COG0507" /db_xref="CDD:30853" misc_feature complement(<1941417..1941764) /locus_tag="AGROH133_07266" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(1941666..1941689) /locus_tag="AGROH133_07266" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(1941420..1941422,1941663..1941686)) /locus_tag="AGROH133_07266" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(1941417..1941434) /locus_tag="AGROH133_07266" /note="Walker B motif; other site" /db_xref="CDD:99707" gene 1941901..1943187 /locus_tag="AGROH133_07267" /db_xref="GeneID:10267734" CDS 1941901..1943187 /locus_tag="AGROH133_07267" /note="Predicted nucleoside-diphosphate-sugar epimerases" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_004279257.1" /db_xref="GI:325293393" /db_xref="GeneID:10267734" /translation="MKILILGATGFIGSEVIRSLHGKGHTVTGLARTIARAKDKWPFA SWVPADLSRMTSAADWAALVSDHDAIVNCAGALQDGLSDDLAATQEKAMLALYRAAVN AGGKLVIQISARTSGAASQLPFLATKRRADVALAASGLRFVILRPALVVGRNAHGGTA LVRALASFPFAVPLVNGKMPVQTVAVEDVALAVSAAIDGEIPSGSDIELAANETLTLQ GVVAAHRQWLGLAPAPALNLPTAFMRPVALTADIAGKLGWRSPLRSTAMRVMSEGIVT ENSAPKATTSLKSLRDTLAAHPSGVQDLWFARSYLLKPVLILCLSLFWLLSGLVPLLD IDSSAAHFLPFMPQVPAVTLTLATCLIDIALGVTVLIRPLARKALIAMLLVTAAYLTG GSLLEPGLWLDPLGPLVKVLPSIALTLVALATLDER" misc_feature 1941901..1942563 /locus_tag="AGROH133_07267" /note="NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs; Region: NDUFA9_like_SDR_a; cd05271" /db_xref="CDD:187579" misc_feature 1941907..1942494 /locus_tag="AGROH133_07267" /note="NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370" /db_xref="CDD:189959" misc_feature order(1941919..1941921,1941925..1941936,1941991..1941999, 1942117..1942125,1942162..1942164,1942231..1942239, 1942270..1942272,1942282..1942284,1942339..1942350) /locus_tag="AGROH133_07267" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187579" misc_feature order(1942270..1942272,1942282..1942284) /locus_tag="AGROH133_07267" /note="active site" /db_xref="CDD:187579" gene 1943187..1943669 /locus_tag="AGROH133_07271" /db_xref="GeneID:10267735" CDS 1943187..1943669 /locus_tag="AGROH133_07271" /note="Predicted integral membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279258.1" /db_xref="GI:325293394" /db_xref="GeneID:10267735" /translation="MTPEDLLRLAHVIGATVLFGTGAGIAFFMVMARRTANPALIAHV SGTVVIADTIFTATAAIIQPVTGYFLARIIGWPLSEGWIALSLCLYVFTGIFWLPVVW IQIKLRDIARDCVAADEALPPQWFRLYRIWFACGFPAFFAVLGIIWLMLTKPDIALFG " misc_feature 1943199..1943648 /locus_tag="AGROH133_07271" /note="Predicted integral membrane protein (DUF2269); Region: DUF2269; cl02335" /db_xref="CDD:154860" gene complement(1943676..1944158) /locus_tag="AGROH133_07276" /db_xref="GeneID:10267736" CDS complement(1943676..1944158) /locus_tag="AGROH133_07276" /note="Activator of Hsp90 ATPase homolog 1-like protein; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279259.1" /db_xref="GI:325293395" /db_xref="GeneID:10267736" /translation="MTDTFNPDLDLKISRIIRAPRQLVWNAWVDKNSLEQWWVPHPGQ CRVEKMELFPGGAFETRYSEDGKAFGDHISGCFLAVDHEERLVFTDALTSGFRPSARP FLTAVMSFRDHPEGMEYVAYAMHRNPGDRDKHAEMGFFDGWNTVAEQLAQLVERQAIN " misc_feature complement(1943691..1944131) /locus_tag="AGROH133_07276" /note="Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; Region: SRPBCC_CalC_Aha1-like_3; cd08896" /db_xref="CDD:176905" misc_feature complement(order(1943709..1943711,1943718..1943726, 1943730..1943756,1943781..1943783,1943787..1943789, 1943793..1943795,1943799..1943801,1943829..1943831, 1943835..1943837,1943841..1943846,1943892..1943897, 1943901..1943903,1943919..1943921,1943928..1943930, 1943934..1943939,1943943..1943945,1943973..1943975, 1943979..1943981,1943985..1943987,1943991..1943993, 1944015..1944017,1944057..1944059,1944072..1944077, 1944081..1944089,1944114..1944116,1944120..1944122, 1944126..1944128)) /locus_tag="AGROH133_07276" /note="putative hydrophobic ligand binding site [chemical binding]; other site" /db_xref="CDD:176905" gene complement(1944155..1944514) /locus_tag="AGROH133_07277" /db_xref="GeneID:10267737" CDS complement(1944155..1944514) /locus_tag="AGROH133_07277" /note="Bacterial regulatory protein, ArsR; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_004279260.1" /db_xref="GI:325293396" /db_xref="GeneID:10267737" /translation="MDNYSAPLDDIFQSLADPTRRAVLLRLGSGDASVGTLSEPFAMA LPSFMKHIRQLEGAGLIVTRKQGRVRFCSLEKQRFSMIEGWLSQQHAIWEGRTDRLEQ FVMAQQDRTSDKGENDK" misc_feature complement(<1944293..1944481) /locus_tag="AGROH133_07277" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature complement(order(1944338..1944340,1944428..1944430, 1944437..1944442,1944449..1944454,1944461..1944463, 1944470..1944472,1944476..1944481)) /locus_tag="AGROH133_07277" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(1944299..1944307,1944320..1944328, 1944344..1944349,1944353..1944358,1944365..1944370, 1944374..1944385,1944410..1944418,1944455..1944463, 1944473..1944478)) /locus_tag="AGROH133_07277" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(1944407..1944409,1944416..1944418)) /locus_tag="AGROH133_07277" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene 1944600..1945028 /locus_tag="AGROH133_07278" /db_xref="GeneID:10267738" CDS 1944600..1945028 /locus_tag="AGROH133_07278" /note="Uncharacterised conserved lipoprotein; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279261.1" /db_xref="GI:325293397" /db_xref="GeneID:10267738" /translation="MSFDVLAAEAARTKEDMSMKIRFIVPALVLAFAGTAYAAPAVET VKTAKGNVLAGEKGMTLYTFKNDKKGVSNCYDKCATNWPPFFAATGDKAEGAYSLVTR KDGKMQWAKDGMPLYYWAKDMKKGDATGDGTNGVWDAAKP" misc_feature 1944618..1945025 /locus_tag="AGROH133_07278" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4315" /db_xref="CDD:34037" misc_feature 1944723..1944854 /locus_tag="AGROH133_07278" /note="Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640" /db_xref="CDD:112457" misc_feature 1944888..1945022 /locus_tag="AGROH133_07278" /note="Secreted repeat of unknown function; Region: Lipoprotein_15; pfam03640" /db_xref="CDD:112457" gene 1945012..1945569 /locus_tag="AGROH133_07280" /db_xref="GeneID:10267739" CDS 1945012..1945569 /locus_tag="AGROH133_07280" /note="RNA polymerase sigma factor, sigma-70 family; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog" /codon_start=1 /transl_table=11 /product="ECF family RNA polymerase sigma factor" /protein_id="YP_004279262.1" /db_xref="GI:325293398" /db_xref="GeneID:10267739" /translation="MPQNHDGMNGNTRGSLSPAAGSFEAEMLALIPMLRRYSRSLSRS DADGEDLLQDCVEKALTNKRQWHGTALKSWAYAIMTNLYRNRHRAAKRHPSESLDGHE SLAVADTLGDTLENDRLHVALGLLSPEMRAVLMLVTVEGYSYQEAAETLSIPVGTVMS RLSRARETLRQHLAADNIIPLRRPR" misc_feature 1945033..1945548 /locus_tag="AGROH133_07280" /note="DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]; Region: RpoE; COG1595" /db_xref="CDD:31783" misc_feature <1945147..1945287 /locus_tag="AGROH133_07280" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature 1945357..1945521 /locus_tag="AGROH133_07280" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature order(1945390..1945392,1945420..1945422,1945438..1945443, 1945471..1945473,1945477..1945482,1945486..1945494, 1945498..1945503,1945507..1945509) /locus_tag="AGROH133_07280" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene 1945566..1946354 /locus_tag="AGROH133_07282" /db_xref="GeneID:10267740" CDS 1945566..1946354 /locus_tag="AGROH133_07282" /note="Predicted transmembrane transcriptional regulator (anti-sigma factor)" /codon_start=1 /transl_table=11 /product="transmembrane anti-sigma factor" /protein_id="YP_004279263.1" /db_xref="GI:325293399" /db_xref="GeneID:10267740" /translation="MKRPDAITEDDLHAYVDGLLSEDDRAAVEAWLTERPQERERVED WKKQAETLRAAFAAYAAEHPHDTAMLAERKQAPAWRLKPVLLRTAAVLLIFAAGAAAG RLVPSPLATPQDVVLASLTTDIPAQAKSAYLIYASEVRHPVEVGAEQQQHLATWLGKR LGYPFAIPDLSKIGYDLVGGRLIPVSGKPGAMLMYQDKTGRRVTVLVGHNEENRTTSF RMASADGVETFYWIDNELGYAVSAELTRAEVQKIAEECYRQFPA" misc_feature 1945566..1946345 /locus_tag="AGROH133_07282" /note="Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]; Region: COG5662" /db_xref="CDD:35221" gene complement(1946417..1947010) /locus_tag="AGROH133_07284" /db_xref="GeneID:10267741" CDS complement(1946417..1947010) /locus_tag="AGROH133_07284" /note="Lysine exporter protein (LYSE/YGGA); Putative threonine efflux protein" /codon_start=1 /transl_table=11 /product="Lysine exporter protein" /protein_id="YP_004279264.1" /db_xref="GI:325293400" /db_xref="GeneID:10267741" /translation="MTVETLVALVLFAFTTSITPGPNNMMLFASGVNFGFRRTIPHML GIGAGFLSLLIGVGFGLGALLHSVPLLYTVLKFAGGLYLVWIAWKIGTSRSLNEGAAA SVPMSFLAAAAFQWVNPKAWVMAVTAMATYTDERQYLVTVLIVGVVFAAVNLPSVSTW AGFGSALRDWLSVPVRLKWFNITMAVLLVVSLWPMLK" misc_feature complement(1946423..1947010) /locus_tag="AGROH133_07284" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene 1947173..1948018 /locus_tag="AGROH133_07292" /db_xref="GeneID:10267742" CDS 1947173..1948018 /locus_tag="AGROH133_07292" /note="Aldo/keto reductase family; Aldo/keto reductases, related to diketogulonate reductase" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="YP_004279265.1" /db_xref="GI:325293401" /db_xref="GeneID:10267742" /translation="MYDDIPSVTLPSGKEIPALGLGTWNMGEMRSSAPQEVESIRKAI DLGMTLIDTAEMYADGRSEEVVGTAIAGRRDEVFLVSKVYPWNASARGTIEACERSLA RLGTDRLDLYLLHWRGDHPLEETVAAFEKLKKAGKIGDWGVSNFDTDDMEELFAVPDG KNCAANQVLYNLSRRGPEFSLLPWCQWHSVPLMAYSPIEQGRILNNHELIRIAKAYQA TPAQLALAFLLEREGVIAIPKSASAARVEENRGATDLEITDEDWAALDAAFPPPTRKT ALEML" misc_feature 1947206..1947976 /locus_tag="AGROH133_07292" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature 1947224..1947982 /locus_tag="AGROH133_07292" /note="Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248" /db_xref="CDD:189468" misc_feature order(1947236..1947244,1947326..1947328,1947341..1947343, 1947416..1947418,1947515..1947520,1947602..1947607, 1947671..1947673,1947755..1947772,1947833..1947835, 1947881..1947892,1947905..1947907,1947914..1947919) /locus_tag="AGROH133_07292" /note="active site" /db_xref="CDD:119408" misc_feature order(1947326..1947328,1947341..1947343,1947416..1947418, 1947515..1947517) /locus_tag="AGROH133_07292" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene complement(1948173..1948718) /locus_tag="AGROH133_07293" /db_xref="GeneID:10267743" CDS complement(1948173..1948718) /locus_tag="AGROH133_07293" /note="Activator of Hsp90 ATPase homologue 1-like; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279266.1" /db_xref="GI:325293402" /db_xref="GeneID:10267743" /translation="MEEMTMADIAMPDAYGRLVEPTTLKIERLLPGPIERVWAYLTQS ELRRRWLASGEMRLAPDAPFELVWRNDELSDPPGSRPEGFSEENRMTSRIITVVAPHR LVFTWGESAEVSIELQALGKDVLLTLVHRRLADRTTKLNVSAGWHAHLDILAARLQEK EPGPFWDSWLGLKEEYERRIP" misc_feature complement(1948182..1948685) /locus_tag="AGROH133_07293" /note="Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; Region: SRPBCC_CalC_Aha1-like_6; cd08899" /db_xref="CDD:176908" misc_feature complement(order(1948260..1948262,1948269..1948277, 1948281..1948307,1948320..1948322,1948326..1948328, 1948332..1948334,1948338..1948340,1948368..1948370, 1948374..1948376,1948380..1948385,1948401..1948406, 1948410..1948412,1948428..1948430,1948437..1948439, 1948443..1948448,1948452..1948454,1948515..1948517, 1948521..1948523,1948527..1948529,1948533..1948535, 1948557..1948559,1948578..1948580,1948593..1948598, 1948602..1948610,1948635..1948637,1948641..1948643, 1948647..1948649)) /locus_tag="AGROH133_07293" /note="putative hydrophobic ligand binding site [chemical binding]; other site" /db_xref="CDD:176908" gene complement(1948696..1949118) /locus_tag="AGROH133_07294" /db_xref="GeneID:10267744" CDS complement(1948696..1949118) /locus_tag="AGROH133_07294" /note="transcriptional regulator, ArsR family; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_004279267.1" /db_xref="GI:325293403" /db_xref="GeneID:10267744" /translation="MIFNHMVDFLVWRPIFNNMVELSVPHLDTVFHALGDATRRTMLR DLSRGERTVSQLAEPFDISLAAASKHIKALENAGLIRREVRGRTHVCRLAPERLAEAH EWLDFYRQFWNSRLDILEQMLREDDQGKSPADGGNDNG" misc_feature complement(1948828..1949028) /locus_tag="AGROH133_07294" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature complement(order(1948885..1948887,1948975..1948977, 1948984..1948989,1948996..1949001,1949008..1949010, 1949017..1949019,1949023..1949028)) /locus_tag="AGROH133_07294" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(1948846..1948854,1948867..1948875, 1948891..1948896,1948900..1948905,1948912..1948917, 1948921..1948932,1948957..1948965,1949002..1949010, 1949020..1949025)) /locus_tag="AGROH133_07294" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(1948954..1948956,1948963..1948965)) /locus_tag="AGROH133_07294" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene complement(1949198..1949770) /gene="ilvH" /locus_tag="AGROH133_07295" /db_xref="GeneID:10267745" CDS complement(1949198..1949770) /gene="ilvH" /locus_tag="AGROH133_07295" /EC_number="2.2.1.6" /note="with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; Acetolactate synthase, small (regulatory) subunit" /codon_start=1 /transl_table=11 /product="acetolactate synthase small subunit" /protein_id="YP_004279268.1" /db_xref="GI:325293404" /db_xref="GeneID:10267745" /translation="MNAHLQPTGSAYFIQKETAAVENHTLSVLVSNEPGVLARVIGLF SGRGYNIESLTVSETEHEAHLSRITIVTRGTPIVLEQIKAQLERIVPVHRVLDLTVRA RELGQERPIEREVALIKVAGSGEARAETLRLADAFQAKVVDATVEHFIFEITGKSSKI DQFVAIIKPLGLIEICRTGIAAMNRGSQGM" misc_feature complement(1949201..1949701) /gene="ilvH" /locus_tag="AGROH133_07295" /note="acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895" /db_xref="CDD:183365" misc_feature complement(1949486..1949701) /gene="ilvH" /locus_tag="AGROH133_07295" /note="N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878" /db_xref="CDD:153150" misc_feature complement(order(1949573..1949575,1949603..1949605, 1949618..1949623,1949660..1949662,1949675..1949677, 1949681..1949683)) /gene="ilvH" /locus_tag="AGROH133_07295" /note="putative valine binding site [chemical binding]; other site" /db_xref="CDD:153150" misc_feature complement(order(1949570..1949572,1949603..1949617, 1949627..1949629,1949636..1949638,1949657..1949659, 1949666..1949671)) /gene="ilvH" /locus_tag="AGROH133_07295" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153150" misc_feature complement(1949213..1949437) /gene="ilvH" /locus_tag="AGROH133_07295" /note="Small subunit of acetolactate synthase; Region: ALS_ss_C; pfam10369" /db_xref="CDD:150959" gene complement(1949790..1951583) /gene="ilvI" /locus_tag="AGROH133_07296" /db_xref="GeneID:10267746" CDS complement(1949790..1951583) /gene="ilvI" /locus_tag="AGROH133_07296" /EC_number="2.2.1.6" /note="Acetolactate synthase, large subunit, biosynthetic; Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]" /codon_start=1 /transl_table=11 /product="acetolactate synthase large subunit" /protein_id="YP_004279269.1" /db_xref="GI:325293405" /db_xref="GeneID:10267746" /translation="MTDKDNTENSNSMTGAEIVLKALKDNGVEHIFGYPGGAVLPIYD EIFQQEDIQHILVRHEQGAGHAAEGYARSTGKVGVMLVTSGPGATNAVTPLQDALMDS IPLVCLSGQVPTSLIGSDAFQECDTVGITRPCTKHNWLVKDVNELAGIIHEAFRIAQT GRPGPVVVDIPKDIQFATGTYTPPSAAIQQKSYKPKVQGDLNAIHAAIELMSKAKKPV FYTGGGVINSGPEATRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGSYEA NMTMHDCDVLVCIGARFDDRITGRLNAFSPNSKKIHVDIDPSSINKTVRVDVPIIGDV SHVLEDMVRLWRALPKKPEKAQTADWWLQIERWRARNSFAYKNSNDVIMPQYALQRLY EASKGRETFITTEVGQHQMWAAQFFGFEEPNHWMTSGGLGTMGYGLPAAIGVQVAHPE ALVIDIAGDASIQMCIQEMSCAIQYGLPVKIFILNNQYMGMVRQWQQLLHGNRLSNSY TEAMPDFVKLAEAYGAVGMYCDDPKELDDKIAEMIAVNRPVIFDCRVANLANCFPMIP SGKAHNEMLLPDEATDEAVANAIDAKGRQLV" misc_feature complement(1949793..1951577) /gene="ilvI" /locus_tag="AGROH133_07296" /note="acetolactate synthase 3 catalytic subunit; Validated; Region: PRK09107" /db_xref="CDD:181652" misc_feature complement(1951068..1951535) /gene="ilvI" /locus_tag="AGROH133_07296" /note="Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035" /db_xref="CDD:132918" misc_feature complement(order(1951281..1951286,1951293..1951295, 1951305..1951307,1951326..1951328,1951362..1951370, 1951374..1951379,1951386..1951391,1951398..1951400, 1951407..1951427,1951452..1951454,1951464..1951466, 1951476..1951481,1951494..1951496)) /gene="ilvI" /locus_tag="AGROH133_07296" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature complement(order(1951185..1951187,1951194..1951196, 1951296..1951298,1951305..1951310,1951314..1951319, 1951326..1951328,1951401..1951403,1951407..1951418, 1951422..1951424,1951452..1951454,1951464..1951466, 1951473..1951481)) /gene="ilvI" /locus_tag="AGROH133_07296" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature complement(order(1951314..1951316,1951326..1951328, 1951404..1951406,1951479..1951481)) /gene="ilvI" /locus_tag="AGROH133_07296" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132918" misc_feature complement(1950561..1950974) /gene="ilvI" /locus_tag="AGROH133_07296" /note="Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205" /db_xref="CDD:189448" misc_feature complement(1949880..1950440) /gene="ilvI" /locus_tag="AGROH133_07296" /note="Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015" /db_xref="CDD:48178" misc_feature complement(order(1950126..1950128,1950192..1950194, 1950201..1950209,1950282..1950284,1950288..1950290, 1950357..1950368)) /gene="ilvI" /locus_tag="AGROH133_07296" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48178" misc_feature complement(order(1950021..1950023,1950030..1950032, 1950042..1950047,1950162..1950164,1950183..1950188, 1950192..1950197,1950282..1950284,1950288..1950290, 1950297..1950299)) /gene="ilvI" /locus_tag="AGROH133_07296" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48178" gene 1951965..1953971 /locus_tag="AGROH133_07297" /db_xref="GeneID:10267747" CDS 1951965..1953971 /locus_tag="AGROH133_07297" /note="Protein of unknown function DUF87; Predicted ATPase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279270.1" /db_xref="GI:325293406" /db_xref="GeneID:10267747" /translation="MNSDEFHRASRMDENERRSGQQPANRMLGRVIACDGAHATIAAE TEIGSTDVAQLWSVGRLISIEMGTSRVAALVYAMRTGEEHWSSDKPNRLLIDVELVGE VYRTEDGSERFSTGISRYPYLGAVAHRIRTGDLSKIYDSGKRDTCVIGKLTQDDTIGA AINIQQMLAKHFAVVGSTGVGKTTAVSLLLNKAIETDPKLRVLILDPHNEFAAAFPDH SVVIDTDTLDLPFWLMRLEEFAEVIFRGRKPVPEEMDVLRDIIPEAKKAFRGTDGSAV RRTSDKSAITPDTPVPYRMADILALIDERIGRLEGRGEKPTLRSLKGRILSAINDTRY NFMFSSNTISDTILETVAHIFRIPGEGKPISVFQLSGIPSEVVNSVVSVLCRMSFELA VLARGSLHMLVVCEEAHRYVPADPERGFFPTRQAIAQIAKEGRKYGISLGVISQRPSE LDQTILSQCSTVFAMRLTNEIDQKIILSAVPNASTSTTSFLSSIGNGEAIAFGEAVGV PMRMRFDRVSTAKLPKANGAVSHTPHETPDTVDLNTIVSRMRAVAKPVITGFQQSVEA AFSDMQEPMSAPREADDVDRWKRELGTAATEGYEPYRPDMLPGRTTLAPQSPATVTDT SAVNELRKVGFQMQAQSGPPPSEARPSLRESLMKKPLGSLYRKD" misc_feature 1952109..1953524 /locus_tag="AGROH133_07297" /note="HerA helicase [Replication, recombination, and repair]; Region: COG0433" /db_xref="CDD:30782" misc_feature 1952406..1953125 /locus_tag="AGROH133_07297" /note="Domain of unknown function DUF87; Region: DUF87; pfam01935" /db_xref="CDD:145224" gene complement(1953981..1954877) /gene="miaA" /locus_tag="AGROH133_07298" /db_xref="GeneID:10267748" CDS complement(1953981..1954877) /gene="miaA" /locus_tag="AGROH133_07298" /EC_number="2.5.1.75" /note="IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity" /codon_start=1 /transl_table=11 /product="tRNA delta(2)-isopentenylpyrophosphate transferase" /protein_id="YP_004279271.1" /db_xref="GI:325293407" /db_xref="GeneID:10267748" /translation="MMKNLDENFDAILITGPTASGKSALALRMARERNGIVINADSMQ VYDTLRVLTARPSEEEMAGVPHLLYGHVPASSSYSTGEWLRDISALLVDLRRQQRFPV IVGGTGLYFKALTGGLSDMPAIPDDIRERLRARLIEEGSTVLHAELSRCDPLMAQGLQ PGDGQRIVRALEVMEATGKSIMEFQKASGPMIVDPDRAEKFVVLPERPVLHDRINRRF ETMMESGAVEEVKALLALNLAPDATAMKAIGVSQIADMLAGGMSEAEVIEKSAAATRQ YAKRQMTWFRNQMGPDWARIQP" misc_feature complement(1953999..1954856) /gene="miaA" /locus_tag="AGROH133_07298" /note="IPP transferase; Region: IPPT; cl00403" /db_xref="CDD:197410" gene 1954876..1955766 /gene="serB" /locus_tag="AGROH133_07299" /db_xref="GeneID:10267749" CDS 1954876..1955766 /gene="serB" /locus_tag="AGROH133_07299" /EC_number="3.1.3.3" /codon_start=1 /transl_table=11 /product="Phosphoserine phosphatase" /protein_id="YP_004279272.1" /db_xref="GI:325293408" /db_xref="GeneID:10267749" /translation="MAFVATLIANPSNPVLTPALGEAAANAVNASGLYWLADGIACDI ALPSGTDAEQARDAIADVLSGQPIDIVVQEQDKRRKKLLIADMDSTMIGQECIDELAA EVGLKDKVSTITARAMNGEIAFEPALRERVALLKGLPVSVIDDVIEKRITLTSGGKEL IATMKAKGYYTALVSGGFTVFTGRVAAMLGFDENRANLLGEADGQLDGTVAEPILGKQ AKVDALNDIAAKLGISPDEAMAVGDGANDLGMLHLAGAGVALHAKPAVAAEAQMRIDH GDLTALLYIQGYRKTDFVVP" misc_feature 1955116..1955616 /gene="serB" /locus_tag="AGROH133_07299" /note="haloacid dehalogenase-like hydrolase; Region: Hydrolase; pfam00702" /db_xref="CDD:189678" misc_feature 1955296..1955616 /gene="serB" /locus_tag="AGROH133_07299" /note="Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others...; Region: HAD_like; cd01427" /db_xref="CDD:119389" misc_feature 1955398..1955400 /gene="serB" /locus_tag="AGROH133_07299" /note="motif II; other site" /db_xref="CDD:119389" gene 1955763..1956335 /locus_tag="AGROH133_07300" /db_xref="GeneID:10267750" CDS 1955763..1956335 /locus_tag="AGROH133_07300" /note="GCN5-related N-acetyltransferase; Acetyltransferases, including N-acetylases of ribosomal proteins" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004279273.1" /db_xref="GI:325293409" /db_xref="GeneID:10267750" /translation="MIIRETSRLILREWKESDRNLFREINADEKVMEFFPFRRSHAEA DAVLETINGMIRGSGYGFYAMELRETGEVMGFCGISPVMNLDPPFPLGTMEIGWRLAT RFWGHGYVTEAAQSLLVMAFDEKETPEIVSFAVHDNQRSTRVMERIGLKRDPSRDFDH PRVPEDTHPHLRPHVTYALTLAEWRERRAQ" misc_feature 1955775..1956326 /locus_tag="AGROH133_07300" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" misc_feature 1955961..1956209 /locus_tag="AGROH133_07300" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(1956360..1957109) /locus_tag="AGROH133_07301" /db_xref="GeneID:10267751" CDS complement(1956360..1957109) /locus_tag="AGROH133_07301" /EC_number="1.1.1.100" /note="Short-chain dehydrogenase/reductase SDR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="short chain dehydrogenase" /protein_id="YP_004279274.1" /db_xref="GI:325293410" /db_xref="GeneID:10267751" /translation="MKLLENKVAIITGASSGIGRATARLFAEQGAAVIINARGAEALE DVASAIRQAGGRVHPVVGDVTVAETHARLTDAAITVFGGLDIAVNNAGAVGATKPLAE ISVEEWDHVIIANLTSAFLGVRSQIPAMLKRGGGSVVFISSFVGTSAGIPGMAAYGTA KAALMGLVKGITADYAIKGIRANALLPGGVDTPMAGDAAQKEWAAGLHAMKRIAEPEE LAQAALFLSSPMSSFVAGSALFADGGNAAVK" misc_feature complement(1956378..1957106) /locus_tag="AGROH133_07301" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653" /db_xref="CDD:180183" misc_feature complement(1956384..1957085) /locus_tag="AGROH133_07301" /note="classical (c) SDRs; Region: SDR_c; cd05233" /db_xref="CDD:187544" misc_feature complement(order(1956531..1956536,1956540..1956551, 1956627..1956629,1956639..1956641,1956681..1956689, 1956768..1956770,1956834..1956842,1956918..1956926, 1956993..1957001,1957056..1957067,1957071..1957073)) /locus_tag="AGROH133_07301" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187544" misc_feature complement(order(1956627..1956629,1956639..1956641, 1956681..1956683,1956765..1956767)) /locus_tag="AGROH133_07301" /note="active site" /db_xref="CDD:187544" gene complement(1957199..1958743) /gene="htrA" /locus_tag="AGROH133_07302" /db_xref="GeneID:10267752" CDS complement(1957199..1958743) /gene="htrA" /locus_tag="AGROH133_07302" /EC_number="3.4.21.-" /note="Peptidase S1C, Do; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain" /codon_start=1 /transl_table=11 /product="serine protease DO-like precursor" /protein_id="YP_004279275.1" /db_xref="GI:325293411" /db_xref="GeneID:10267752" /translation="MAVTLLSPFRSSIAAVAGFALVAGSLSAPVAAWAQSHGPASVAD LAAPLLDAVVNISTSQNVKTEGKGPVPPKLPEGSPFQEFFKDYFDNQKPEGGDKVSSL GSGFVIDPAGYIVTNNHVIEGADAIEVIFPNGSKLKATLVGTDTKTDLSVLKVEPKAP LKAVKFGDSRSMRIGDWVMAVGNPFGLGGSLTVGVVSARGRNINAGPYDNFIQTDAAI NKGNSGGPLFNMKGEVIGINTAIISPSGGSIGIGFAVPTELAQNIVEQLIQFGETRRG WLGVRVQPVTDDVAASLGMEAAKGALISGVAKGGPVENGPIQAGDIVLKFDGKDIHEM RDLLRIVAESPVGKEVDVVVFRDGKEETVKVKLGQLQDAPDEKAATDDPQAEDGDGGM VVPDDKGGSDDQAQDQTPEVREAPQRVLGMNLVVLSNELRTEKGIAESVEGVLVASVD QGSPAEQKGMKAGDVIVEVGQDFMEVPGDVLVRVNGLKSEGRKNAHMMVADAQGNLRV VALPLE" misc_feature complement(1958024..1958431) /gene="htrA" /locus_tag="AGROH133_07302" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic...; Region: Tryp_SPc; cl00149" /db_xref="CDD:193682" misc_feature complement(1957649..1957918) /gene="htrA" /locus_tag="AGROH133_07302" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature complement(order(1957730..1957735,1957742..1957747, 1957898..1957900,1957904..1957915)) /gene="htrA" /locus_tag="AGROH133_07302" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" misc_feature complement(<1957280..1957492) /gene="htrA" /locus_tag="AGROH133_07302" /note="PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-...; Region: PDZ_serine_protease; cd00987" /db_xref="CDD:29044" misc_feature complement(order(1957301..1957306,1957313..1957318, 1957472..1957474,1957478..1957489)) /gene="htrA" /locus_tag="AGROH133_07302" /note="protein binding site [polypeptide binding]; other site" /db_xref="CDD:29044" gene complement(1959005..1959928) /gene="hflC" /locus_tag="AGROH133_07304" /db_xref="GeneID:10267753" CDS complement(1959005..1959928) /gene="hflC" /locus_tag="AGROH133_07304" /EC_number="3.4.-.-" /note="SPFH domain / Band 7 family; Membrane protease subunits, stomatin/prohibitin homologs" /codon_start=1 /transl_table=11 /product="hflC protein" /protein_id="YP_004279276.1" /db_xref="GI:325293412" /db_xref="GeneID:10267753" /translation="MSNRLTAVLVGLAAVLFLAYSSIFVVTERQQAIVVRFGQIQDVK TAPGLYFKLPFAFMDADRVQYIENRALRFDHDNIRVQVSGGKFYEVDAFVVYRITDAR RFRQTVSGDQMSAESRLRTRLDASLRRVYGLRGFESALSDARASMMQEVRDDLRPDAE SLGVSIVDVRIRRTDLTQEVSQQTFERMKSERLAEAELIRARGNEAAQRRRAIADRQV VEFESDAQRQSEVLRGEGDAERNRVFGEAFQRDPSFFEFYRSMAAYSSALSGTGTTLV LSPDSTFFRYFNDINGAPSTAPAAPAAPPAN" misc_feature complement(1959065..1959871) /gene="hflC" /locus_tag="AGROH133_07304" /note="FtsH protease regulator HflC; Provisional; Region: PRK11029" /db_xref="CDD:182913" misc_feature complement(1959125..1959862) /gene="hflC" /locus_tag="AGROH133_07304" /note="Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflC; cd03405" /db_xref="CDD:48217" gene complement(1959930..1961051) /gene="hflK" /locus_tag="AGROH133_07307" /db_xref="GeneID:10267754" CDS complement(1959930..1961051) /gene="hflK" /locus_tag="AGROH133_07307" /EC_number="3.4.-.-" /note="SPFH domain / Band 7 family; Membrane protease subunits, stomatin/prohibitin homologs" /codon_start=1 /transl_table=11 /product="hflK protein" /protein_id="YP_004279277.1" /db_xref="GI:325293413" /db_xref="GeneID:10267754" /translation="MPWSNQNGGGGPWGGGGGGGNNQGGGGGPWGQGPNRPRGGGGGN GGPPDLEEIIRRSQDRFKNVLPGGFNGGAIAIVALVVLVFLGIQSIYTVQPDERGVEL RFGRPKDEISMPGLHFHLWPIETVEIVKVTEQQQNIGSRASSSSANGVMLTGDQNIVN VQFSVLYTVSDPKSYLFNVDSPAETLQQVSESAMREIVGRRPAQDIFRDNRQAIAADV RTIIQSTMDGYGAGISINAVAIEDAAPPREVADAFDEVQRAEQDEDRFVQEANQYANQ KLGAARGQAAQIIEEANAYKSRVVNEAEGEAQRFISIYDQYRTAPDVTRQRMFLETME QVLKGSNKVIIDEKQGVVPYLPLNEIMRGNPGAAQQGGN" misc_feature complement(1960041..1960790) /gene="hflK" /locus_tag="AGROH133_07307" /note="Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflK; cd03404" /db_xref="CDD:48216" misc_feature complement(1959978..1960784) /gene="hflK" /locus_tag="AGROH133_07307" /note="HflK protein; Region: hflK; TIGR01933" /db_xref="CDD:130988" gene complement(1961195..1961410) /gene="folA" /locus_tag="AGROH133_07309" /db_xref="GeneID:10267755" CDS complement(1961195..1961410) /gene="folA" /locus_tag="AGROH133_07309" /EC_number="1.5.1.3" /codon_start=1 /transl_table=11 /product="Dihydrofolate reductase" /protein_id="YP_004279278.1" /db_xref="GI:325293414" /db_xref="GeneID:10267755" /translation="MAGGGEIYRQAMPFADQLSVTHVAVKLDGDTFFPEIDPAVFEKI EENAVPAGEKDNYPVLFTTYLRRAASK" misc_feature complement(1961219..>1961404) /gene="folA" /locus_tag="AGROH133_07309" /note="Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-...; Region: DHFR; cd00209" /db_xref="CDD:29264" gene complement(1962241..1963035) /gene="thyA" /locus_tag="AGROH133_07310" /db_xref="GeneID:10267756" CDS complement(1962241..1963035) /gene="thyA" /locus_tag="AGROH133_07310" /EC_number="2.1.1.45" /note="ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived" /codon_start=1 /transl_table=11 /product="Thymidylate synthase" /protein_id="YP_004279279.1" /db_xref="GI:325293415" /db_xref="GeneID:10267756" /translation="MKQYLDLLRHVMDTGSDRGDRTGTGTRSVFGYQMRFDLAEGFPV LTTKKLHLRSIIHELLWFLKGDTNIAYLKENGVSIWDEWADENGDLGPVYGAQWRSWP APDGRHIDQIALLIEALKTNPNSRRHIVSAWNPALVDEMALPPCHCLFQFYVSDGKLS CQLYQRSADIFLGVPFNIASYALLTLMVAQVTGLKPGDFVHTLGDAHIYANHFEQAKL QMTRTPKALPTMRLNPDVRDLFSFKFEDFTLENYEADSTIKAPIAV" misc_feature complement(1962385..1963029) /gene="thyA" /locus_tag="AGROH133_07310" /note="Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the...; Region: TS_Pyrimidine_HMase; cd00351" /db_xref="CDD:58645" misc_feature complement(order(1962421..1962426,1962535..1962540, 1962544..1962546,1962571..1962573,1962583..1962585, 1962589..1962591,1962631..1962636,1962655..1962660, 1962946..1962948,1962973..1962975,1962988..1962990)) /gene="thyA" /locus_tag="AGROH133_07310" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:58645" misc_feature complement(order(1962409..1962411,1962415..1962417, 1962505..1962510,1962529..1962531,1962535..1962543, 1962595..1962600,1962754..1962756,1962787..1962789, 1962796..1962798,1962862..1962864,1962970..1962972)) /gene="thyA" /locus_tag="AGROH133_07310" /note="active site" /db_xref="CDD:58645" gene complement(1963129..1963437) /locus_tag="AGROH133_07311" /db_xref="GeneID:10267757" CDS complement(1963129..1963437) /locus_tag="AGROH133_07311" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279280.1" /db_xref="GI:325293416" /db_xref="GeneID:10267757" /translation="MTDYLADVKKYDAAADEAIVGKIVKHLGIALRNRDSSLVSASDP EELARVKANWCGKKLGVTDDSADKAIDATAKAMAADRSKSRVTFYYLVAKELGKLQSL " misc_feature complement(1963138..1963434) /locus_tag="AGROH133_07311" /note="Protein of unknown function (DUF2853); Region: DUF2853; pfam11015" /db_xref="CDD:151462" gene 1964181..1964693 /locus_tag="AGROH133_07312" /db_xref="GeneID:10267758" CDS 1964181..1964693 /locus_tag="AGROH133_07312" /note="Protein of unknown function DUF1321; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279281.1" /db_xref="GI:325293417" /db_xref="GeneID:10267758" /translation="MGQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFL TGAPGVRISQHLKSKYAEQMTIVIQHQFWDLKVTEIGFEIGLSFSDTPEKLVVPYNAI RGFYDPSVNFELEFDVPLADEEELEEAEITAYPVSHEAKPATTSETPKSGEEKKEGSV VSLDAFRKKQ" misc_feature 1964181..1964687 /locus_tag="AGROH133_07312" /note="Stringent starvation protein B; Region: SspB; cl01120" /db_xref="CDD:194042" gene 1964738..1964941 /locus_tag="AGROH133_07313" /db_xref="GeneID:10267759" CDS 1964738..1964941 /locus_tag="AGROH133_07313" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279282.1" /db_xref="GI:325293418" /db_xref="GeneID:10267759" /translation="MAADIVNLRQFRKQKARSEKEKQADQNRLSFGRTKAEKNLTSAL NEKAAKALDQGRLEKDDDRTDRD" gene 1965058..1965267 /locus_tag="AGROH133_07314" /db_xref="GeneID:10267760" CDS 1965058..1965267 /locus_tag="AGROH133_07314" /note="Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279283.1" /db_xref="GI:325293419" /db_xref="GeneID:10267760" /translation="MIRKHSTTLHGHRTSISLEDAFWDELKIIAEKRKISFAALLAEI DDNRPADSNLSSSLRVHVLNWLKSK" misc_feature 1965058..>1965264 /locus_tag="AGROH133_07314" /note="Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]; Region: COG4321" /db_xref="CDD:34043" gene 1965504..1965833 /locus_tag="AGROH133_07315" /db_xref="GeneID:10267761" CDS 1965504..1965833 /locus_tag="AGROH133_07315" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279284.1" /db_xref="GI:325293420" /db_xref="GeneID:10267761" /translation="MVSAASGTSIAVSVLSSSSTSSSSVAELKSQIAEKQSELAQTSE AKAQEELKSTIASLQAQLEALENSSDKSASSSNSADKPSLSGESSRIGTKNFDADTPF GEREAWI" gene complement(1965953..1969684) /locus_tag="AGROH133_07317" /db_xref="GeneID:10267762" CDS complement(1965953..1969684) /locus_tag="AGROH133_07317" /note="Uncharacterized protein involved in outer membrane biogenesis" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279285.1" /db_xref="GI:325293421" /db_xref="GeneID:10267762" /translation="MLGRILVFLGGLLAVVLFSALLIPYFVDWTDFRRDFEDQASRIL GKKVVVHGRVEARLLPFPSVTLHDVRAGTDADGSPLIQVARFSMDAELAPFLSGEARI FDMRIEEPKAKIRLLKDGTLDWMRGSRAEIPARTVVLESVQIEGGQIEFIDEQSGRNR VVTGLNADMSANSLAGPWKAEGRAAVDGHPGSFSLSSSEPDYANGRMGLRIRVVPDEH PVEVDLDGAIAATAGKPAYSGSFAFSFREDQKQKQQAGQSLFSSPRTRGSFELTNESV RIPSYRMELGGNENPYVVTGEATLDTGAKPEFLLTADGQQIDVNRFAPPVVQTGKTSR QPTASVRQRIEAFAAMVARIPVPPVPGKASISLPALVSDDTTIRDIRLDVRPDGSGWQ VVNAVATLPGRTQLEAKGSLTLLDGPAFNGNLLVASNQPSGLANWLSGSVDPAIRQLN AAGFSADVSLTTLNQRFDNLELAIGDASLKGKLERRSDGKASNLSIDLAGNEIDLDAL KALGSLALGDQVGSSVLDHRIDAKFKADRFNMAGVTANHVETAFTMAGGVLSLEKMTA GDIAGAEVKAKGQLQGSLLKYAGKGTVNLHATDMQPFFAMLQQKLPGHPFLSRLAASS PWYANSDLAMDVSVNSENGGANVAVSGTVNGSRLSAVAKMPDFLSITDDTAMSLEGVL KNQSTAILFGQAGLDPLPFDADGEGLLSVKLNGTLGSPVQTDIRFSTERTHFSMIGSF AVAAANFGEGSADLALESADIEPYLIMNAVGLPQLGGGMALKANGKMAVDAQKIAFSA LGGQAGGNPFSGSLAFQRAAPHSVTGDLALRTVDLAWLGDAIYGPVIDPETGTLNAKP LAMPAFPQLKASLSLKAESLEAGPFGTVTGLSTKVTHDDGNLALDDIAGTFMGGKLTG RIAMSTGEGAGIFRTKIAVNDANPESILWANADGPVATGRVAIDLTAESTGKSVGEIL KSAGGSGEVRASGLVLKGLNPGAFPPILQAAEGLQQPIDAPKVRPLVDQSLWQGEIPL GNVALPFTLNGGALHFQNLRAGIDPVTLTGDATVDIAASTVNGDLDLIFNPGTEVVAG AEPSLRLNYNGPLAAPALTTDVSALGNYLSLRAFEKERRRVEAMQASVLEKQRLRRET ALYRSQAAERQAEKERVEAEAKAKAEEEARLKAAAEERLRQEKEQQERLQQQQQQQQQ QQQQQQQPVPERQSTPALTVPPTEDAIRQLAPENAPANP" misc_feature complement(1967951..1969609) /locus_tag="AGROH133_07317" /note="Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]; Region: AsmA; COG2982" /db_xref="CDD:32801" gene complement(1969776..1971188) /gene="dld" /locus_tag="AGROH133_07319" /db_xref="GeneID:10267763" CDS complement(1969776..1971188) /gene="dld" /locus_tag="AGROH133_07319" /EC_number="1.1.1.4" /note="FAD dependent oxidoreductase; FAD/FMN-containing dehydrogenases" /codon_start=1 /transl_table=11 /product="D-lactate dehydrogenase" /protein_id="YP_004279286.1" /db_xref="GI:325293422" /db_xref="GeneID:10267763" /translation="MALKDVVAGKRNEEGIASVLAALKQQLGDKLQTGQAFREQHGHT TTYLTLQAPDGVVFAENADDVKAVVKACAQYKVPVIPFGTGSSLEGQVNAPDGGICID FSRMNRIIEVNAEDLDVTVEPGVTREDLNVYLRDTGLFFPIDPGANASIGGMASTRAS GTNAVRYGTMKDNVLAVTAVVANGEEIRTARRARKSSAGYDLTRLFVGAEGTLGVLTS VTLRLQGIPEKIAGGVCTFDSIQAACDAVIMTIQMGVPVARIELLDEVQVRACNAYSG LNYAEKPTLFVEFHGTEETAALQSQQFAEIAAECGSVDFRWTSDAAERNKLWKARHDA YWASRALAPHLDGLSTDVCVPISRLADCVVETQRDIKENGFLAPIVGHAGDGNFHVLI LFDGKDAESVAKTEAFVARLNRRAIAMDGTCTGEHGIGQGKMSFLAEEAGNALNVMRA IKTSLDPDNIFNPGKLFRLV" misc_feature complement(1969791..1971134) /gene="dld" /locus_tag="AGROH133_07319" /note="D-lactate dehydrogenase [cytochrome]; Region: PLN02805" /db_xref="CDD:178402" misc_feature complement(1970622..1971032) /gene="dld" /locus_tag="AGROH133_07319" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" gene complement(1971319..1974468) /locus_tag="AGROH133_07320" /db_xref="GeneID:10267764" CDS complement(1971319..1974468) /locus_tag="AGROH133_07320" /note="Acriflavin resistance protein, AcrB/AcrD/AcrF family; Cation/multidrug efflux pump" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein" /protein_id="YP_004279287.1" /db_xref="GI:325293423" /db_xref="GeneID:10267764" /translation="MTTQSPSGQDSKLAFTALFVRRPILAAVLNTLLVVAGLAALVGV EVRELPDVDRPSISVRTTYEGAAPETIDQEVTQTIEGAVARVSGVKSISSNSQFGTSR VTMEFGDNVDMAVAANDVRDAIGRVTNQLPDDADEPQIIKADSDSQPIMRLAVTSSTL SMEDLTKLVDDEVIDRLAAVDGVADVELYGDQEKVFRVDLNQAALASRGLTVTDISTA LASAALDVPAGSLKSSTQDIVVRATASLTKPEDFSNLLIKDNIRLRDVATVMLGADDE STSLRSNGVQGVGLGVIRQAQSNTLNISTGVKAAVEAMSANLPQGTRIVVTSDDAVFI EGALHEVELALGLSALIVVVVLYLFLRDWRATLIPAITMPVALIGTIIAIYMVGFSIN ILTLLAIVLATGLVVDDAIVVLENIVRRRAEGMGPRAAAVLGTQEVFFAVIATTATLA AVFIPLSFLPGQLGGLFREFGFVLAFAVGLSSIVALTLCPMLASRMLKDGLKEPTGPL AWFGNVFASTYKKTLSACLNNPLIVIIVALVFSGLSWIAFGMIQNELTPREDRASVMM RVTAPQGVSLDYTRDQLQRIEENLQPLRDSGEIRNIYSITGMNGSSNTGFLVLTLAPW ADRDRTQNQIAADVTAAANKVPALRGNAMQPNSLRIRGAGNGLQMAMVGSNYQALTAA TQKLLLSMEESGLFETPRLDNEPNQAQLSVSIDRERASDLGIDITGLSRAMQSLLEGR SVVDVFVDGDAIPVRLLSSTRPINDPTDLENVFLKTGDGKIVPISVIATLKENAVAPQ LNREQQLPSVGFTANLKDGVSLGQALEKVNELSQSLLPPGARLLPLGEAATLEENSSG MLLTFGFAIAIIFLVLAAQFESVLSSIIIMSTVPLGLACAVIALLVTGSSLNVYSQIG LVLLVGVMAKNGILIVEFANHLRDQGATVREAIEKATSIRLRPVMMTMIATILGGVPL VLAQGAGAEARIALGWVIVGGLGFATLVTLYITPVSYLLIARFAKPQADEEIRLHREL ELAARRKALEEDKQLLAAE" misc_feature complement(1971424..1974426) /locus_tag="AGROH133_07320" /note="Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841" /db_xref="CDD:31183" misc_feature complement(1973011..>1973418) /locus_tag="AGROH133_07320" /note="Protein export membrane protein; Region: SecD_SecF; cl14618" /db_xref="CDD:176628" gene complement(1974465..1975631) /locus_tag="AGROH133_07333" /db_xref="GeneID:10267765" CDS complement(1974465..1975631) /locus_tag="AGROH133_07333" /note="efflux transporter, RND family, MFP subunit; Membrane-fusion protein" /codon_start=1 /transl_table=11 /product="HlyD family secretion protein" /protein_id="YP_004279288.1" /db_xref="GI:325293424" /db_xref="GeneID:10267765" /translation="MRVWKQVGVCLAVAGAGLCLWGLYSPEARNLLAGIGIGKTPVGA VEVAASGARTPGSSSGQNAGAARRDGNATLVAMAPVKQGTVNDRLNAIGSGEAIQSVV VMPQTSGTLSEIRISSGARVVKGQVLARLDDEEQVIERDKAQVALRSAVEKSSSYSNL KSVSRLDVLDAQIAEEAAKLALSTAELNLRRRDIVAPIEGVVGIVAANIGDNVTTQST IVGIDDRSQILVNFWAPERFVTAITVGMPVEATSISRPGETFKGEVEAVDNRVDAASR TIRIRARFANDKDELRAGMSFGVTMRFAGETYASVDPLAVQWDAEGSYVWRVTDNKSA KVRVQIVQRNPDAVLVKAELAEGDQVVTEGLQRVREGGAVRVASQPKPEEVASQ" misc_feature complement(1974504..1975409) /locus_tag="AGROH133_07333" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 1975857..1976267 /locus_tag="AGROH133_07335" /db_xref="GeneID:10267766" CDS 1975857..1976267 /locus_tag="AGROH133_07335" /note="Carboxymuconolactone decarboxylase family, alkylhydroperoxidase AhpD family core domain; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="alkylhydroperoxidase like protein, AhpD family" /protein_id="YP_004279289.1" /db_xref="GI:325293425" /db_xref="GeneID:10267766" /translation="MSTVTKAENPEANPRVKAVFDDIRTTRKSDFINNMWLYLAFDPD LLEKTWAEVKAVMATPSALDPLVKEMLYIAVSVTNGCSYCAHSHTAAAKAKGMTGEQH ADLMRVIAVAAKTNQLAVALQLPVDAAFDADRRA" misc_feature 1975983..1976228 /locus_tag="AGROH133_07335" /note="Carboxymuconolactone decarboxylase family; Region: CMD; cl00460" /db_xref="CDD:193827" gene 1976369..1978843 /gene="pcrA" /locus_tag="AGROH133_07336" /db_xref="GeneID:10267767" CDS 1976369..1978843 /gene="pcrA" /locus_tag="AGROH133_07336" /EC_number="3.6.1.-" /note="DNA helicase, UvrD/REP type, ATP-dependent DNA helicase PcrA; Superfamily I DNA and RNA helicases" /codon_start=1 /transl_table=11 /product="DNA helicase II" /protein_id="YP_004279290.1" /db_xref="GI:325293426" /db_xref="GeneID:10267767" /translation="MSNSFDDMPFFDEEPEAPRKATNNADAGNAGGLGIAARAMAARD QARATPDYLSGLNPEQREAVETLDGAVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQ ILAVTFTNKAAREMKERIGVLVGGAVEGMPWLGTFHSIGVKLLRRHAELIGLKSDFTI LDTDDVVRLIKQLIQAEGLDDKRWPAKQFAGMIDGWKNKGLTPPDIPEGDSRAFANGK GRELYTAYQNRLKTLNACDFGDLLLHPISIFRRNPDILKEYHQKFRYILVDEYQDTNT AQYMWLRLLAQRPKGEPQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFPGAKVIKLER NYRSTEHILGTAGHLIAHNEGRLGKTLFTERSSPDDEKVVVHAAWDSEEEARAVGEEI EQLQRKNHKLNDMAILVRASFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYF RLVCQPADDLAFERIVNTPKRGLGDTTIRNLHDYARARDIPMLAAATDIIETDELKPK ARKALFDVVQDFRRWQGLLENTEHTTLAEQILDESGYTAMWQADKTAEAPGRLENLKE LIRSMEAFESLRGFLEHVALVMDAEQNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGL FPHQRALDEGGRSGLEEERRLAYVGITRAKKLCHIWFVSNRRIHGLWQSTLPSRFLDE LPPAHVDVAASDSNYGGYGGRGGYGQSRFDKAEPFANNYSTPGWKRAQANKSDATRDN WGTRSGHAVERIGYGESGPRARTIDGELVAKSVADKPSKFVVGDRVFHIKFGNGNISA IEGNKLTIDFDRAGQKRVLDGFVEKV" misc_feature 1976525..1978828 /gene="pcrA" /locus_tag="AGROH133_07336" /note="ATP-dependent DNA helicase PcrA; Region: pcrA; TIGR01073" /db_xref="CDD:162191" misc_feature 1976534..1978003 /gene="pcrA" /locus_tag="AGROH133_07336" /note="UvrD/REP helicase; Region: UvrD-helicase; cl14126" /db_xref="CDD:196784" gene 1978947..1979759 /locus_tag="AGROH133_07337" /db_xref="GeneID:10267768" CDS 1978947..1979759 /locus_tag="AGROH133_07337" /EC_number="2.-.-.-" /note="glycosyltransferase family 25 (LPS biosynthesis protein); glycosyltransferase involved in LPS biosynthesis" /codon_start=1 /transl_table=11 /product="glycosyltransferase 25 family member 1" /protein_id="YP_004279291.1" /db_xref="GI:325293427" /db_xref="GeneID:10267768" /translation="MHILPKSGRKLAVFLINMDSATKRLEDMNARLDAIGLKAERVPG VNGRELNYPIPEFSELSYMLMHGRRTSPPEIGCYLSHVACANRFMGSDADIALILEDD VVFEKDFLEAIDEAIVNGSDWDLLRLTTVSNGRKFPFRKLVGGRSLAIALTREKGSGA YLVNRRAGKWISKLIPMRLAYDIAFDLEYLAGLKAAFIYPLCATQDADGESQIQNNLR IYRLPRWRYFTVLPYRAFLETSRFLMRSLRFAVAKLTVALERGKGKTVPTGN" misc_feature 1978983..>1979270 /locus_tag="AGROH133_07337" /note="Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of...; Region: Glyco_transf_25; cd06532" /db_xref="CDD:133474" gene complement(1979770..1979889) /locus_tag="AGROH133_07338" /db_xref="GeneID:10267769" CDS complement(1979770..1979889) /locus_tag="AGROH133_07338" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279292.1" /db_xref="GI:325293428" /db_xref="GeneID:10267769" /translation="MKKTTRKPLNRMTIFVISIFTLAAVIAAVYLVGFTPGEV" gene complement(1979923..1980519) /gene="betI" /locus_tag="AGROH133_07341" /db_xref="GeneID:10267770" CDS complement(1979923..1980519) /gene="betI" /locus_tag="AGROH133_07341" /note="Bacterial regulatory proteins, tetR family; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="HTH-type transcriptional regulator betI" /protein_id="YP_004279293.1" /db_xref="GI:325293429" /db_xref="GeneID:10267770" /translation="MRLTKISDIRRAELRRAAFEVLQREGMAGATLERVAAQAGASKG IVLHYFANKQELFEHAMREANVKLKEAVVARLNRAVSPRERLDAIIEANFDESFFQPS ICHAWLSLCAEVPREPQLARIQKVIHARMRSNLLSALVHLVPRQDCATVALGITSLID GLWLRSGLQSGGLTRDEAMEQMRDYLSYRLPQAKAGNP" misc_feature complement(1979950..1980516) /gene="betI" /locus_tag="AGROH133_07341" /note="transcriptional repressor BetI; Region: betaine_BetI; TIGR03384" /db_xref="CDD:132427" misc_feature complement(1980346..1980471) /gene="betI" /locus_tag="AGROH133_07341" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 1980621..1981559 /locus_tag="AGROH133_07342" /db_xref="GeneID:10267771" CDS 1980621..1981559 /locus_tag="AGROH133_07342" /note="ABC transporter substrate-binding protein (glycine betaine); ABC-type proline/glycine betaine transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="glycine/betaine ABC transporter substrate-binding protein" /protein_id="YP_004279294.1" /db_xref="GI:325293430" /db_xref="GeneID:10267771" /translation="MKKWAGVFSAAMVLTTVGTSALASDAETCKVVRLAEPGWNDLAF TTGIAMSLLKSLGYEPQSQLLGIDVIYTSLKSKDLDVFLGYWNPAMVNYYKPYKEDGS VEKVRTNLVGAKYTFAVPTYVWDAGVRDFSDLQKFADKFDSKLYGIEPGSNQLMLDAV NDPALGLHNWEVVESSEQGMLSQVTRFARNKSFIVFQGWAPHPMNSKFDIKYLTGGDK FYGPDFGAATVDTQVRKGYLQECPNVAKLLDNLAFDVEYENKGMDYIMNGGMSPEDAA RQAIKDEPQRLDAWLKGVSTFDGQDGLTAVKAGIGL" misc_feature 1980621..1981517 /locus_tag="AGROH133_07342" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature 1980687..1981544 /locus_tag="AGROH133_07342" /note="choline ABC transporter, periplasmic binding protein; Region: ABC_choline_bnd; TIGR03414" /db_xref="CDD:188316" gene 1981556..1982386 /locus_tag="AGROH133_07343" /db_xref="GeneID:10267772" CDS 1981556..1982386 /locus_tag="AGROH133_07343" /EC_number="3.1.-.-" /note="Alpha/beta hydrolase fold-1; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase fold protein" /protein_id="YP_004279295.1" /db_xref="GI:325293431" /db_xref="GeneID:10267772" /translation="MTAILQDDWEKRKQYVELPRGRQLAFIDTGGPGPVLLMLHGFSD TSRSFSMLEPFFSEYRLIVPDLPGHGVSSAGQSLHVADFAETVDQFLTLLGISRLFLL GHSMGAMTTIELAARRGDTIRAVALISATLEPDFGAESQLTRDILALRDPIGPNSCFL RGWYSCSQPVDDDFLSKMKQDAANMPAAIWHGVVERFADTNLHHSASRIKKPVLCLAG FEDPLFGASHRRKLAAAFPDAQTVTLDGHGHNPHWENPKGVSTLIADFFADVMSDCAK " misc_feature 1981661..1982332 /locus_tag="AGROH133_07343" /note="Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697" /db_xref="CDD:193173" misc_feature 1981709..>1981948 /locus_tag="AGROH133_07343" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 1982497..1982979 /locus_tag="AGROH133_07344" /db_xref="GeneID:10267773" CDS 1982497..1982979 /locus_tag="AGROH133_07344" /note="Protein of unknown function DUF606; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279296.1" /db_xref="GI:325293432" /db_xref="GeneID:10267773" /translation="MTETTHPRLNPLHLAAAFASGCLLTLMVHFNGQLAHYGNALFSS WTAHGTGTVAALIYLAIMRPKTEAGALAKPKAPLWAYCGGVIGAAIVILTSTAVNSPL ALSGTIALGLGGQVIFSLLADFFGLFGLPKRRPDLRDMAAVALILCGSALIILVGRTA " misc_feature 1982518..1982955 /locus_tag="AGROH133_07344" /note="Protein of unknown function, DUF606; Region: DUF606; cl01273" /db_xref="CDD:194091" gene 1982976..1983401 /locus_tag="AGROH133_07350" /db_xref="GeneID:10267774" CDS 1982976..1983401 /locus_tag="AGROH133_07350" /note="Protein of unknown function DUF606; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279297.1" /db_xref="GI:325293433" /db_xref="GeneID:10267774" /translation="MIVWIAMAFTGGVFVALSRQVNGRLSLSNSPLIASFWNHIVGFG VLTVIGLIVGGLIPPGAADAPWLAFIGGPIGVVFIASGSWLIPRIGAVNTALLVISGQ MVSSVVLDFFSDQPPKLWASALGILLILAGMVLTQRRGR" misc_feature 1982982..>1983311 /locus_tag="AGROH133_07350" /note="Protein of unknown function, DUF606; Region: DUF606; cl01273" /db_xref="CDD:194091" gene complement(1983454..1984740) /locus_tag="AGROH133_07355" /db_xref="GeneID:10267775" CDS complement(1983454..1984740) /locus_tag="AGROH133_07355" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279298.1" /db_xref="GI:325293434" /db_xref="GeneID:10267775" /translation="MAYSAAAYNGAGLAGSSCLKRGKSFSLGRMSALLGGGAFAGLFA FAAFASLHTMAAASHGVGQFEKTLVARLESGEAAISGAAARDIHVRKFSRLSDHSHGP QKAVRLAGIMPEIGEKEFRERFGAAANAKGQATVKELAALRPSAIVDSALGRTTEVAY QSAASQHPAFEVALGRPQIEEEASSLLPDDVPLPSFRPEVAAAETVEPSPRPAVLAKT DEHPAAVASAPAFDAPVPARAPQQPRQGTAGMLAFAKPDNPVREPSKMDAVPWPDRGN GTAIYDISSGLVHMPNGEKLEAHSGIGKMRDNPDYVHVRMRGSTPPSSYRLTMREARF HGVEAIRLTPENGVNPHGRDGLLAHTYMLAKRGESNGCVVFRDYSRFLAAFKRGEVKR MVVVPKLNGGRPTLASSGGKSGGKTLLSMFSRDSDT" misc_feature complement(1983544..1983861) /locus_tag="AGROH133_07355" /note="Protein of unknown function (DUF2778); Region: DUF2778; pfam10908" /db_xref="CDD:151355" gene 1985196..1985822 /gene="pncA" /locus_tag="AGROH133_07358" /db_xref="GeneID:10267776" CDS 1985196..1985822 /gene="pncA" /locus_tag="AGROH133_07358" /EC_number="3.5.1.-" /EC_number="3.5.1.19" /note="Isochorismatase family; Amidases related to nicotinamidase" /codon_start=1 /transl_table=11 /product="pyrazinamidase / nicotinamidase" /protein_id="YP_004279299.1" /db_xref="GI:325293435" /db_xref="GeneID:10267776" /translation="MKALLLIDIQNGFCPGGNLAVADGDRIVPVANALIDNGGYDLIV ASQDWHPENHGSFASQHVGKKPFDMGELSGKPQMMWPDHCVQGTPDAEFHPDLKTEAF DYIQQKGENPAVDSYSAFRDNDQGATTGLADYLTRQGVTQLDICGLATDYCVSFSVLD ALDMLPGVKVRFIEDASRGIDPQGIQASIAAMREKGATILKSRDILRD" misc_feature 1985196..1985795 /gene="pncA" /locus_tag="AGROH133_07358" /note="Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is...; Region: nicotinamidase; cd01011" /db_xref="CDD:29549" misc_feature 1985202..1985795 /gene="pncA" /locus_tag="AGROH133_07358" /note="Isochorismatase family; Region: Isochorismatase; pfam00857" /db_xref="CDD:189743" misc_feature order(1985217..1985219,1985517..1985519,1985652..1985654) /gene="pncA" /locus_tag="AGROH133_07358" /note="catalytic triad [active]" /db_xref="CDD:29549" misc_feature order(1985337..1985339,1985343..1985345,1985442..1985444) /gene="pncA" /locus_tag="AGROH133_07358" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:29549" misc_feature 1985637..1985642 /gene="pncA" /locus_tag="AGROH133_07358" /note="conserved cis-peptide bond; other site" /db_xref="CDD:29549" gene complement(1985830..1986066) /locus_tag="AGROH133_07359" /db_xref="GeneID:10267777" CDS complement(1985830..1986066) /locus_tag="AGROH133_07359" /note="Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279300.1" /db_xref="GI:325293436" /db_xref="GeneID:10267777" /translation="MLEKQDRAVLAARVREYLARETETEIGLLQAEIFVDFLAEEVGY VFYNQGLKDAHAAILRRLEDAAGDIDVLEKPRLR" misc_feature complement(1985833..1986066) /locus_tag="AGROH133_07359" /note="Uncharacterized conserved protein (DUF2164); Region: DUF2164; cl02278" /db_xref="CDD:154834" gene 1986248..1986967 /locus_tag="AGROH133_07360" /db_xref="GeneID:10267778" CDS 1986248..1986967 /locus_tag="AGROH133_07360" /note="AzlC protein; Predicted branched-chain amino acid permease (azaleucine resistance)" /codon_start=1 /transl_table=11 /product="AzlC family transmembrane protein" /protein_id="YP_004279301.1" /db_xref="GI:325293437" /db_xref="GeneID:10267778" /translation="MSNADFREGLKSGFPIALSAAPFGALFGAVAVDNGLSVAEATIM SGTVYAGASQLVGIELFGQKVAPWLIVLSVFAVNFRHILYSAAIARMITNWTFLQKAI GFFVLVDPQFAESVRKYENTGVVGFAWYMGFATPIYILWLMMTIVGASLGNLVGDPKA IGLDVLLPIYFMGMVLSFRQRENFYPVMLASALGATVAYHIVGSPWHVSLGALAGILV AVVYPPKPTGEANSESKVETP" misc_feature 1986251..1986925 /locus_tag="AGROH133_07360" /note="AzlC protein; Region: AzlC; cl00570" /db_xref="CDD:193874" gene 1986964..1987278 /locus_tag="AGROH133_07366" /db_xref="GeneID:10267779" CDS 1986964..1987278 /locus_tag="AGROH133_07366" /note="Branched-chain amino acid transport protein (AzlD); Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279302.1" /db_xref="GI:325293438" /db_xref="GeneID:10267779" /translation="MSDLLHADTLILIALATVATYLTRIGGYVLMTRMKSIPPRMEAG LNAVPVAVLTTLVAPAFFEGGYEVKIAMVAALLVCLRFPGLTMLAIGWAIVVAIRHFS IL" misc_feature 1986970..1987269 /locus_tag="AGROH133_07366" /note="Branched-chain amino acid transport protein (AzlD); Region: AzlD; cl00735" /db_xref="CDD:193920" gene complement(1987275..1989194) /locus_tag="AGROH133_07370" /db_xref="GeneID:10267780" CDS complement(1987275..1989194) /locus_tag="AGROH133_07370" /EC_number="3.4.11.9" /note="metallopeptidase family M24; Xaa-Pro aminopeptidase" /codon_start=1 /transl_table=11 /product="aminopeptidase P" /protein_id="YP_004279303.1" /db_xref="GI:325293439" /db_xref="GeneID:10267780" /translation="MALSLRANDLTALPNSFPHDSSRKMPMFQTFENKSAPQFGKARV EALRASFDALGIDGFLVPRADEYQGEYVPESSERLSWLTGFTGSAGIALVTRAEAVVF VDGRYTTQLKSQVDQSVFSGGDLVGAPPSVWLSEHGAAGFRLGIDPWLHTGAELKRLE KALAGKGGSVVLLENNPLDALWHDRPSEPLEPVVIQPEAFTGKLAKEKIASLAETVSA KGADALLVTDPSSIAWIFNIRGNDVPHTPHPLARAIIYADGKADIFLDKRKTGIEAEA YLAQLATQLPPSNIADRLHAIASAKGRVMVDADLTPVALTGAITAAGGTLIEEADPVR LPRACKNAAELAGSAAAHVQDGAAMVEYLCWLDRQQPGSVTEIAAVKALEAARAKVGQ SLQNPLKDVSFDTISGAGEHAAIIHYRVTTDTDRTLGDGEMFLVDSGAQYVNGTTDIT RTVAISNVPEDQRRFFTLVLKGVIAISDARFPKGTRGCDLDPLARIALWKAGADYAHG TGHGVGSYLSVHEGPQRISRLSTQELLPGMILSNEPGYYRPGAFGIRIENLIYVREAA EVAGGDQPMLSFETLTWCPIDRRLVVTALLTDDELDWLNAYHAGVLEKLSPLIADEEV KAWLVAATQPLARNA" misc_feature complement(1988700..1989068) /locus_tag="AGROH133_07370" /note="Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321" /db_xref="CDD:189940" misc_feature complement(1987503..1988606) /locus_tag="AGROH133_07370" /note="Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006" /db_xref="CDD:30356" misc_feature complement(<1988256..1988573) /locus_tag="AGROH133_07370" /note="Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321" /db_xref="CDD:189940" misc_feature complement(1987479..1988156) /locus_tag="AGROH133_07370" /note="X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline...; Region: APP; cd01085" /db_xref="CDD:29970" misc_feature complement(order(1987524..1987526,1987566..1987568, 1987650..1987652,1987851..1987853,1987884..1987886, 1987944..1987946)) /locus_tag="AGROH133_07370" /note="active site" /db_xref="CDD:29970" gene 1989455..1989628 /locus_tag="AGROH133_07371" /db_xref="GeneID:10267781" CDS 1989455..1989628 /locus_tag="AGROH133_07371" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279304.1" /db_xref="GI:325293440" /db_xref="GeneID:10267781" /translation="MAKSFLRTAFDRVIEARERQVSRHVNAALLNLDDKSLEALGMNR AELRRTAKSSYVF" gene complement(1989779..1990657) /gene="prmA" /locus_tag="AGROH133_07372" /db_xref="GeneID:10267782" CDS complement(1989779..1990657) /gene="prmA" /locus_tag="AGROH133_07372" /EC_number="2.1.1.-" /note="methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; Ribosomal protein L11 methylase" /codon_start=1 /transl_table=11 /product="ribosomal protein L11 methyltransferase" /protein_id="YP_004279305.1" /db_xref="GI:325293441" /db_xref="GeneID:10267782" /translation="MSEIRLYVTTTEIKAGEILDLMSDYFGEEDVAIATTEVDEKRDI WEASVYLMAEQEDEFRERIDTLLAPAFPGLAIEKEIVPDIDWIAKSLEGLKPVRAGRF IVHGAHDRDKIKPNDLAIEIEAGQAFGTGHHGTTAGCLEMIEDVLRTRTVRNALDLGT GSGVLAIAVRKMRHIPVLATDIDPIAVRVARENVRLNGIVSGLALETAPGFHSDAFRK YGPFDLIIANILARPLIKMAPQLVTHLAPGGTVILSGILASQRWKVLAAYNGARLSHV RTIWRNGWVTLHLRKD" misc_feature complement(1989785..1990657) /gene="prmA" /locus_tag="AGROH133_07372" /note="Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]; Region: PrmA; COG2264" /db_xref="CDD:32445" misc_feature complement(1989884..1990198) /gene="prmA" /locus_tag="AGROH133_07372" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(1989974..1989976,1990028..1990036, 1990112..1990117,1990166..1990186)) /gene="prmA" /locus_tag="AGROH133_07372" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1990753..1991385) /gene="sco1" /locus_tag="AGROH133_07373" /db_xref="GeneID:10267783" CDS complement(1990753..1991385) /gene="sco1" /locus_tag="AGROH133_07373" /note="Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems" /codon_start=1 /transl_table=11 /product="sco1 membrane protein" /protein_id="YP_004279306.1" /db_xref="GI:325293442" /db_xref="GeneID:10267783" /translation="MRPAFGGRIRTMRNIRIVLWAVVVVLVGVVSWLTLEMTKTREEM VETAYGVPFELTAQNGQPITEKAFQGKPTALFFGFTHCPEVCPTTLFELNGWMEKVDP AGDKLQAYFVSVDPERDTPELMQQYVSNVSKRITGITGPADKIAETLKGYRIYAKKVP VDDKDPNGDYTMDHTASVILLDANGRFSGTIAYGENPDVAEQKLQNLLKG" misc_feature complement(1990807..1991241) /gene="sco1" /locus_tag="AGROH133_07373" /note="SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c...; Region: SCO; cd02968" /db_xref="CDD:48517" misc_feature complement(order(1990864..1990866,1991128..1991130, 1991140..1991142)) /gene="sco1" /locus_tag="AGROH133_07373" /note="Cu(I) binding site [ion binding]; other site" /db_xref="CDD:48517" gene complement(1991496..1991792) /locus_tag="AGROH133_07375" /db_xref="GeneID:10267784" CDS complement(1991496..1991792) /locus_tag="AGROH133_07375" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279307.1" /db_xref="GI:325293443" /db_xref="GeneID:10267784" /translation="MSGVKNRYGHIAQQDFKLSLTIGGAALAKPSILAVFLLVQTGYN RRMNTLVANPLKFILASLAVAASLAVVLLAFDGWVRHGTDIFLSAVQSGIAWCL" gene 1991878..1992345 /gene="cheW" /locus_tag="AGROH133_07378" /db_xref="GeneID:10267785" CDS 1991878..1992345 /gene="cheW" /locus_tag="AGROH133_07378" /note="CheW-like domain; Chemotaxis signal transduction protein" /codon_start=1 /transl_table=11 /product="Chemotaxis protein cheW" /protein_id="YP_004279308.1" /db_xref="GI:325293444" /db_xref="GeneID:10267785" /translation="MSNAIKQSGAYLEIVSFHLGGQEFCIDIMAIREIRGWAPVTPMP HTPPYVLGLINLRGAVIPVIDMAGRLGMKMTEPSERSAIIVTDIGGKLVGLLVEQVSD MMTIRSEDLQPAPDIIPEEQRNFCRGIVALEKSMVCFLNLDTVIADELAREAA" misc_feature 1991911..1992324 /gene="cheW" /locus_tag="AGROH133_07378" /note="CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732" /db_xref="CDD:29682" misc_feature order(1992040..1992057,1992139..1992141,1992145..1992147, 1992304..1992324) /gene="cheW" /locus_tag="AGROH133_07378" /note="putative CheA interaction surface; other site" /db_xref="CDD:29682" gene complement(1992559..1993050) /gene="creA" /locus_tag="AGROH133_07379" /db_xref="GeneID:10267786" CDS complement(1992559..1993050) /gene="creA" /locus_tag="AGROH133_07379" /note="CreA protein; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="CreA protein" /protein_id="YP_004279309.1" /db_xref="GI:325293445" /db_xref="GeneID:10267786" /translation="MTMKTLSGLFAGFLVLFPVTVAHSEVVGKVGVDWIGNDIVIEAI ADPKIKGVTCHVTYFDRGVIDRLKNGNWFEDPSNNAISCSQTGPVEIGDIDLSKGGEE VFRQGMSLVWKKLVVSRVYDKANDTLIYLVHARELKDGSAKMAISTVPLYNQQVTWEK GKP" misc_feature complement(1992562..1993050) /gene="creA" /locus_tag="AGROH133_07379" /note="CreA protein; Region: CreA; cl01154" /db_xref="CDD:186361" gene complement(1993097..1993705) /locus_tag="AGROH133_07381" /db_xref="GeneID:10267787" CDS complement(1993097..1993705) /locus_tag="AGROH133_07381" /EC_number="2.7.7.7" /note="Exonuclease; DNA polymerase III, subunit alpha (gram- positive type)" /codon_start=1 /transl_table=11 /product="DNA polymerase III, epsilon subunit" /protein_id="YP_004279310.1" /db_xref="GI:325293446" /db_xref="GeneID:10267787" /translation="MKTIAIDFETANEERGSACSIGLAWIEDGEIVRVEERLIRPKDM RFSPFNIAVHGIRPADVEDAPEFPDVMEEFIDDFHGATMIAHNAAFDFSVMRASFDKY RQSYPDLSYLCSVKIARHVWPQLASHKLNVIAHHLQLRFVHHNAAEDAVVCAAASIAA ARALRVDHIRDLPEKIGMVAGRLTSTGYQPCSMKKRVVSRVA" misc_feature complement(1993271..1993696) /locus_tag="AGROH133_07381" /note="an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III; Region: DNA_pol_III_epsilon_like; cd06130" /db_xref="CDD:99834" misc_feature complement(order(1993274..1993276,1993433..1993441, 1993445..1993450,1993670..1993672,1993676..1993687)) /locus_tag="AGROH133_07381" /note="active site" /db_xref="CDD:99834" misc_feature complement(order(1993274..1993276,1993436..1993441, 1993445..1993450,1993670..1993672,1993676..1993687)) /locus_tag="AGROH133_07381" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99834" misc_feature complement(order(1993274..1993276,1993433..1993435, 1993679..1993681,1993685..1993687)) /locus_tag="AGROH133_07381" /note="catalytic site [active]" /db_xref="CDD:99834" gene complement(1993749..1994651) /locus_tag="AGROH133_07382" /db_xref="GeneID:10267788" CDS complement(1993749..1994651) /locus_tag="AGROH133_07382" /note="LysR, substrate-binding; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004279311.1" /db_xref="GI:325293447" /db_xref="GeneID:10267788" /translation="MVAELPSLKGLQAFEAAARYRSVTLASNELNVTPGAVSLQIREL EARLGVQLFVRKPRSIQLTREGERYYGSLRTAFRMMREATAELTARSEITVLTLSCTP TFAVQWLMPRLPGFQQQHPQVDVRISVTNRLVDFSRDDVDLAVRHGFGRYEGLESIRF IDDSTLPVCSPQLFEKYGPFRVAGDLKCVPLLHDENRNEWRRWLETAGATEVDASGGT VFIDSNGALDAAKAGHGVALTRRSLVSRELAEGALIAPFGTDIASTLAYFLVYPRRML DNPDLVRLLDWMLAEAGSTEAGSL" misc_feature complement(1993761..1994651) /locus_tag="AGROH133_07382" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(1994451..1994630) /locus_tag="AGROH133_07382" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(1993788..1994369) /locus_tag="AGROH133_07382" /note="HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432" /db_xref="CDD:176123" misc_feature complement(order(1994265..1994285,1994289..1994342, 1994346..1994369)) /locus_tag="AGROH133_07382" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176123" misc_feature complement(order(1993923..1993925,1993983..1993991, 1994340..1994342,1994346..1994351)) /locus_tag="AGROH133_07382" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176123" gene 1994849..1995781 /locus_tag="AGROH133_07383" /db_xref="GeneID:10267789" CDS 1994849..1995781 /locus_tag="AGROH133_07383" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279312.1" /db_xref="GI:325293448" /db_xref="GeneID:10267789" /translation="MAIQKQMDASEWGMLVALSLLWGGSFFFIGIAVKELPPVTIVTL RVSLAAAALLIVCRIMGLHLPRQWAVWRAFFGMGLLNNIIPFCLIVWGQTHIASGLAS ILNATTPLFTVIVAHFLTADEKMTGNKLAGVLIGFAGVATMIGPAAFGGAISGLWGQI AILGAAISYSFAGIFGRCFKAMGVPPLMTATGQISSSTLMLIPAALLIDKPWTLAMPS LGTWGALIGIALLSTALAYLIFFRILATAGATNLALVTFLIPVSAILLGSLILGEQLE IKHFAGMAMIAAGLAAIDGRLPAKLRDFLRKAPA" misc_feature 1994906..1995271 /locus_tag="AGROH133_07383" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" misc_feature 1994912..1995679 /locus_tag="AGROH133_07383" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:162128" misc_feature 1995398..1995688 /locus_tag="AGROH133_07383" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene 1995969..1996499 /locus_tag="AGROH133_07394" /db_xref="GeneID:10267790" CDS 1995969..1996499 /locus_tag="AGROH133_07394" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family; Acetyltransferases, including N-acetylases of ribosomal proteins" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004279313.1" /db_xref="GI:325293449" /db_xref="GeneID:10267790" /translation="MNMKPADITNKPFDLKDVVLRATRLEDVEALTEMLNLPGVRHGT LRQPFQTIEKTRKSIENRAPTDIVIVAEWHGKLVGNAGLYRRAGRQYHVADLAMSVHD DFAGKGVGSRLLTALIDAADNWHDIRRIELNVFTDNLAALRLYEKLGFEREGTLRNDA YRDGKYVDAYVMARLR" misc_feature 1996011..1996496 /locus_tag="AGROH133_07394" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" misc_feature 1996020..1996496 /locus_tag="AGROH133_07394" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" gene complement(1996504..1997397) /gene="kka" /locus_tag="AGROH133_07395" /db_xref="GeneID:10267791" CDS complement(1996504..1997397) /gene="kka" /locus_tag="AGROH133_07395" /note="Phosphotransferase enzyme family; Predicted aminoglycoside phosphotransferase" /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase" /protein_id="YP_004279314.1" /db_xref="GI:325293450" /db_xref="GeneID:10267791" /translation="MDDRIVISRQQVRALITSQFPQWAELDVRPVELSGWDNRSFHLG DDMLVRLPSAGRYVAQVEKEHRWLPKLAPLLPLPIPKPLAIGEPGQDYPFPWSVYGWL DGEPLARHLGHINLATIAVDVAAFLKSLQSIDATDGPRAGEHNFHRGGSLAVYDGEAR AATLRLADEVDQRLAMEIWQLALSSSWQGQGVWVHGDIAEGNLLVRDGRLSAVIDFGS SGVGDPSSDLILAWNVLDAESRNVFRLAMDLDNATWQRGRGWALWKALITLEAQRRRD EKLAEWSRRTIREVIADHLSA" misc_feature complement(1996516..1997397) /gene="kka" /locus_tag="AGROH133_07395" /note="Predicted aminoglycoside phosphotransferase [General function prediction only]; Region: COG3173" /db_xref="CDD:32986" misc_feature complement(1996612..1997319) /gene="kka" /locus_tag="AGROH133_07395" /note="Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such...; Region: APH_ChoK_like_1; cd05155" /db_xref="CDD:88618" misc_feature complement(order(1996696..1996698,1996753..1996758, 1996786..1996788,1996792..1996797,1996807..1996809, 1997092..1997103,1997158..1997160,1997248..1997250, 1997254..1997256,1997278..1997280,1997290..1997292)) /gene="kka" /locus_tag="AGROH133_07395" /note="putative active site [active]" /db_xref="CDD:88618" misc_feature complement(order(1996696..1996698,1996807..1996809, 1997290..1997292)) /gene="kka" /locus_tag="AGROH133_07395" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:88618" misc_feature complement(order(1996753..1996758,1996786..1996788, 1996792..1996797,1996807..1996809,1997092..1997103, 1997158..1997160,1997248..1997250,1997254..1997256, 1997278..1997280)) /gene="kka" /locus_tag="AGROH133_07395" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:88618" gene complement(1997462..1999636) /gene="ligA" /locus_tag="AGROH133_07396" /db_xref="GeneID:10267792" CDS complement(1997462..1999636) /gene="ligA" /locus_tag="AGROH133_07396" /EC_number="6.5.1.2" /note="this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; NAD-dependent DNA ligase (contains BRCT domain type II)" /codon_start=1 /transl_table=11 /product="DNA ligase" /protein_id="YP_004279315.1" /db_xref="GI:325293451" /db_xref="GeneID:10267792" /translation="MSKDQIPVENLTELEASSELAFLAAELARHDALYHGKDAPEISD ADYDALKRRNDAIEAAFPALVRADSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEGD LRDFVSSVYRFLGHLPDDSIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVT ANIKTIKEIPNQLPADVPDVVEVRGEVYMAKSDFMALNAQMEADGKQTYVNPRNTASG SLRQFDANVTAKRKLRFFAYALGEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKR FTSAEQLLEHYNEIGVARPDLDYDIDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPA EQAFTTVENIEIQVGRTGALTPVARLTPITVGGVVVTNATLHNADYIEGIGNSGERIR PEDHDIRIGDTVIVQRAGDVIPQVLDVLLEKRPAEAVKYAFPEKCPVCGSHAVRERNE KTGKLDSVTRCTGGFVCRAQAVEHLKHFVSRNAFDIEGLGSKQIDFFFESEDPALSIK TAPDIFTLKARQEASHLTKLENIDGFGKVSVKKLFDAIDARREIDLHRLIFALGIRHV GETTAKLLARSYGTYEHFEEAMKAAADPASDAWAELNSIDGIGEVVARAIIEFYKEPR NLDVIDRLIRELRPKEAEKPSTEGSPVAGKTVVFTGSLEKFTRDEAKARAESLGAKVA GSVSKKTDILVAGPGAGSKLAKAAELGVQTMDEDEWLALIGG" misc_feature complement(1997465..1999552) /gene="ligA" /locus_tag="AGROH133_07396" /note="NAD-dependent DNA ligase LigA; Validated; Region: ligA; PRK07956" /db_xref="CDD:181181" misc_feature complement(1998635..1999552) /gene="ligA" /locus_tag="AGROH133_07396" /note="NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114" /db_xref="CDD:29013" misc_feature complement(order(1998716..1998718,1998722..1998724, 1998923..1998925,1999079..1999081,1999187..1999189, 1999250..1999252,1999256..1999258,1999355..1999357)) /gene="ligA" /locus_tag="AGROH133_07396" /note="nucleotide binding pocket [chemical binding]; other site" /db_xref="CDD:29013" misc_feature complement(order(1999241..1999246,1999250..1999252)) /gene="ligA" /locus_tag="AGROH133_07396" /note="K-X-D-G motif; other site" /db_xref="CDD:29013" misc_feature complement(1999250..1999252) /gene="ligA" /locus_tag="AGROH133_07396" /note="catalytic site [active]" /db_xref="CDD:29013" misc_feature complement(1998347..1998628) /gene="ligA" /locus_tag="AGROH133_07396" /note="NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120" /db_xref="CDD:145978" misc_feature complement(1998230..1998331) /gene="ligA" /locus_tag="AGROH133_07396" /note="NAD-dependent DNA ligase C4 zinc finger domain; Region: DNA_ligase_ZBD; pfam03119" /db_xref="CDD:190528" misc_feature complement(1997750..1997971) /gene="ligA" /locus_tag="AGROH133_07396" /note="Helix-hairpin-helix motif; Region: HHH_2; pfam12826" /db_xref="CDD:193301" misc_feature complement(1997480..1997680) /gene="ligA" /locus_tag="AGROH133_07396" /note="Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/...; Region: BRCT; cd00027" /db_xref="CDD:28909" misc_feature complement(order(1997597..1997599,1997603..1997605, 1997612..1997614,1997621..1997623,1997633..1997635)) /gene="ligA" /locus_tag="AGROH133_07396" /note="Dimer interface [polypeptide binding]; other site" /db_xref="CDD:28909" misc_feature complement(1997483..1997485) /gene="ligA" /locus_tag="AGROH133_07396" /note="BRCT sequence motif; other site" /db_xref="CDD:28909" gene complement(1999647..1999739) /locus_tag="AGROH133_07397" /db_xref="GeneID:10267793" CDS complement(1999647..1999739) /locus_tag="AGROH133_07397" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279316.1" /db_xref="GI:325293452" /db_xref="GeneID:10267793" /translation="MLRIADYRLLKSEDGFAFANNSLKALQIHP" gene 1999767..2000381 /gene="rhtB" /locus_tag="AGROH133_07398" /db_xref="GeneID:10267794" CDS 1999767..2000381 /gene="rhtB" /locus_tag="AGROH133_07398" /note="Lysine exporter protein (LYSE/YGGA); Putative threonine efflux protein" /codon_start=1 /transl_table=11 /product="RhtB family transporter" /protein_id="YP_004279317.1" /db_xref="GI:325293453" /db_xref="GeneID:10267794" /translation="MELTTLIAFAAAFFVFAASPGPDNMTIVARTITHGAASGLAYGA GTVAGILIFLTLAAFGLSILAAEMGTVMAVLRYGGAAYLIWMGFKLWTAEPVVPGLQP MNGRHSLLSIFATGTALNLGNPKMPLFYVALLPNVVGASLTVDHLLALASVIVVVEAV VIGAHVVLAVRARKLLREPRIVRRVNRAAGGVMIGSGVAVAVSR" misc_feature 1999767..2000378 /gene="rhtB" /locus_tag="AGROH133_07398" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene complement(2000378..2002051) /gene="recN" /locus_tag="AGROH133_07404" /db_xref="GeneID:10267795" CDS complement(2000378..2002051) /gene="recN" /locus_tag="AGROH133_07404" /note="ATPase involved in DNA repair" /codon_start=1 /transl_table=11 /product="DNA repair protein recN" /protein_id="YP_004279318.1" /db_xref="GI:325293454" /db_xref="GeneID:10267795" /translation="MLVQLSIRDIVLIERLDLGFEAGLSVLTGETGAGKSILLDSLSL ALGGRGDGGLVRHGEDKGQVTATFEVPNSHPTRHLLRENGLDDDGDLIFRRVQSADGR TKAYINDQAISVQMMRQLGQLLVEIHGQHDDRALVDTDAHRTLLDAFAGLSEDARAVQ GFYRTWKDAERALKTHRAKVEAAAREADYLRSSVEELEVLSPRDGEEEELAERRAVMQ KSERIAGDIAEASEFLNGNASPVPMIASMMRRLERKSHEAPGLLEDTVQLLDAALDSL SNAQMEVEAALRRTEFDPRELERVEERLFALRAAGRKYNVAVPDLPALAEKMVADLAD LDAGEEKLGKLEANLGVVKADFDHAAKSLSEKRRNAANALSEAVMAELPALKLERARF TVEVSSDPEQATADGIDIVEFHVQTNPGTRPGPIMKVASGGELSRFLLALKVALADRG SAPTLVFDEIDTGVGGAVADAIGQRLRRLSKTVQVLSVTHAPQVAARAATHLLISKGP SGDGTERIATRVATMEPKHRTEEIARMLAGASVTDEARAAAARLLAAKD" misc_feature complement(2000420..2002051) /gene="recN" /locus_tag="AGROH133_07404" /note="ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: RecN; COG0497" /db_xref="CDD:30843" misc_feature complement(<2001608..2002048) /gene="recN" /locus_tag="AGROH133_07404" /note="RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides...; Region: ABC_RecN; cd03241" /db_xref="CDD:73000" misc_feature complement(2001944..2001967) /gene="recN" /locus_tag="AGROH133_07404" /note="Walker A/P-loop; other site" /db_xref="CDD:73000" misc_feature complement(order(2001635..2001637,2001941..2001949, 2001953..2001958)) /gene="recN" /locus_tag="AGROH133_07404" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73000" misc_feature complement(2001635..2001646) /gene="recN" /locus_tag="AGROH133_07404" /note="Q-loop/lid; other site" /db_xref="CDD:73000" misc_feature complement(2000438..>2000836) /gene="recN" /locus_tag="AGROH133_07404" /note="RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides...; Region: ABC_RecN; cd03241" /db_xref="CDD:73000" misc_feature complement(2000735..2000764) /gene="recN" /locus_tag="AGROH133_07404" /note="ABC transporter signature motif; other site" /db_xref="CDD:73000" misc_feature complement(2000675..2000692) /gene="recN" /locus_tag="AGROH133_07404" /note="Walker B; other site" /db_xref="CDD:73000" misc_feature complement(2000657..2000668) /gene="recN" /locus_tag="AGROH133_07404" /note="D-loop; other site" /db_xref="CDD:73000" misc_feature complement(2000576..2000596) /gene="recN" /locus_tag="AGROH133_07404" /note="H-loop/switch region; other site" /db_xref="CDD:73000" gene complement(2002067..2002933) /locus_tag="AGROH133_07405" /db_xref="GeneID:10267796" CDS complement(2002067..2002933) /locus_tag="AGROH133_07405" /note="DNA uptake lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="YP_004279319.1" /db_xref="GI:325293455" /db_xref="GeneID:10267796" /translation="MKHVGSGAMKGTMRGIAVSLMLVGASVAVTACQSDPDIDITKLG VETDPPDVLYKQGLANMNAGNMTEASRKFEAIDKQYPFTEWGQKALVMQTFIATRTNK NDVAIASGSRFLRQYPRSKDAAYVQYMIGLAYSKQISDVTQDQRAAQRTVEAMSKVVN DYPDSEYVADAQAKIRFARDQLAGREMQVGRYYLERKEYLAAVSRFRIVVEQYQNTNQ IEEALARLTESYYAMGLSDEAQTAAAVLGNNYPDSQWYADSYKLLKGGGLEPRENKGS WISRAGKKLIGA" misc_feature complement(2002124..2002885) /locus_tag="AGROH133_07405" /note="DNA uptake lipoprotein [General function prediction only]; Region: ComL; COG4105" /db_xref="CDD:33862" gene complement(2003170..2004126) /gene="lpxC" /locus_tag="AGROH133_07406" /db_xref="GeneID:10267797" CDS complement(2003170..2004126) /gene="lpxC" /locus_tag="AGROH133_07406" /EC_number="3.5.1.-" /note="zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-acyl-N-acetylglucosamine deacetylase" /codon_start=1 /transl_table=11 /product="UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine deacetylase" /protein_id="YP_004279320.1" /db_xref="GI:325293456" /db_xref="GeneID:10267797" /translation="MTIGLLGFQTTIANAVQLKGIGVHSGNPASMTFQPAEAGTGIVF QRLHENGSVTELKAVSSNVGNTDLCTVLGRSLSQSVATVEHVMAAIYAMGLDNLVVEV DGPEVPIMDGSSAPFIDAIESAGIKNLGVKRRYIRVIKPVRIDSGASWAEFRPYDGTR FEVDIDFDTPLIGKQSWKGDLTADTFKNELSRARTFGFMRDVERLWAAGYALGSSLEN SVVISDDNSVINMEGLRYAKDEFVRHKTLDAVGDLALAGAQFIGCYRSYRGGHKVNAN ALKALLSDRSAYEIVEAPAARNQVRAREFVPVNMPEFAPWSA" misc_feature complement(2003215..2004105) /gene="lpxC" /locus_tag="AGROH133_07406" /note="UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]; Region: LpxC; cl00512" /db_xref="CDD:189111" misc_feature complement(2003275..2004102) /gene="lpxC" /locus_tag="AGROH133_07406" /note="UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331" /db_xref="CDD:146126" gene complement(2004398..2006146) /gene="ftsZ" /locus_tag="AGROH133_07407" /db_xref="GeneID:10267798" CDS complement(2004398..2006146) /gene="ftsZ" /locus_tag="AGROH133_07407" /note="GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; Cell division GTPase" /codon_start=1 /transl_table=11 /product="Cell division protein ftsZ" /protein_id="YP_004279321.1" /db_xref="GI:325293457" /db_xref="GeneID:10267798" /translation="MTIQLQKPDITELKPRITVFGVGGGGGNAVNNMITAGLQGVDFV VANTDAQALTMTKADRVIQLGVNVTEGLGAGSQPEVGRAAAEECIDEIIDHLNGTHMC FVTAGMGGGTGTGAAPVVAQAARNKGILTVGVVTKPFHFEGGRRMRLAEQGIEELQKS VDTLIVIPNQNLFRIANDKTTFADAFAMADQVLYSGVACITDLMVKEGLINLDFADVR SVMREMGRAMMGTGEASGPGRAMQAAEAAIANPLLDETSMKGAQGLLISITGGRDLTL FEVDEAATRIREEVDPDANIILGATFDEALEGLIRVSVVATGIDRVAGVGEQNVADMR AAAAAKPLIRPSAAVAPAPAAVQPAQAVSQAPKTVDQIAQTIRSAEAEMERELGFAAH QQPSQDFRPQSKLFASAPAEAPAALRPAQPVQQAAPAPVAPAPVYHAPEQVAAPRLQQ PQAPVYQEQAPVARQPEPVRMPKVEDFPPVVKAEMDHRAHAAPAAQEERGPMGLLKRI TNSLGRREEEEVPSEMMDAPSMAPQQRRALSPEASLYAPRRGQLDDHGRATPSSASHH DDDQLEIPAFLRRQSN" misc_feature complement(2005133..2006116) /gene="ftsZ" /locus_tag="AGROH133_07407" /note="Cell division GTPase [Cell division and chromosome partitioning]; Region: FtsZ; COG0206" /db_xref="CDD:30555" misc_feature complement(2005193..2006104) /gene="ftsZ" /locus_tag="AGROH133_07407" /note="FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum...; Region: FtsZ_type1; cd02201" /db_xref="CDD:100021" misc_feature complement(order(2005568..2005570,2005577..2005582, 2005589..2005591,2005640..2005642,2005709..2005711, 2005730..2005735,2005808..2005828,2005991..2005993, 2006063..2006065,2006072..2006080)) /gene="ftsZ" /locus_tag="AGROH133_07407" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:100021" misc_feature complement(order(2005310..2005312,2005319..2005330, 2005508..2005510,2005514..2005519)) /gene="ftsZ" /locus_tag="AGROH133_07407" /note="SulA interaction site; other site" /db_xref="CDD:100021" misc_feature complement(2004401..2004739) /gene="ftsZ" /locus_tag="AGROH133_07407" /note="cell division protein FtsZ, alphaProteobacterial C-terminal extension; Region: FtsZ_alphas_C; TIGR03483" /db_xref="CDD:163287" gene complement(2006239..2007570) /gene="ftsA" /locus_tag="AGROH133_07408" /db_xref="GeneID:10267799" CDS complement(2006239..2007570) /gene="ftsA" /locus_tag="AGROH133_07408" /note="Cell division protein FtsA; Actin-like ATPase involved in cell division" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="YP_004279322.1" /db_xref="GI:325293458" /db_xref="GeneID:10267799" /translation="MSFFGSSHFGLPRLKPLSSKRSHIVSVLDIGSTKVVCMIGRLTP RQESEILPGRTHKVEIIGIGHQRSRGVKSGVIADLDALEGVIRLSVDAAERMAGLTVD SLIVNVSAGRLASDIYTASIDLGGQEVEASDLRKVLVAASQQSMRQDRAILHSLPTGY SLDGERGIRDPLSMYGDLLGVDMHVVTVERTALKNLELCVNRAHLSVEGMVATPYASG LAALVDDEVELGCAAIDMGGGTTTISVFAEGRLIHTDAIGLGGHHVTTDLARGLSTRI EDAERLKVVHGSALLNGADERDMISIPPIGEDDRDQPSQVSRALVTRIVRARIEETLE LIRDRIQKSGFSPIVGKRVVLTGGASQLTGLPETARRILARNVRIGRPMGVAGLPVAA KGPAFSTACGLMIYPQVADIEIHAAQGGMFSPFGTGSGRIARVGQWLKESF" misc_feature complement(2006242..2007513) /gene="ftsA" /locus_tag="AGROH133_07408" /note="Cell division ATPase FtsA [Cell division and chromosome partitioning]; Region: ftsA; COG0849" /db_xref="CDD:31190" misc_feature complement(2006908..2007498) /gene="ftsA" /locus_tag="AGROH133_07408" /note="Cell division protein FtsA; Region: FtsA; cl11496" /db_xref="CDD:196250" misc_feature complement(2006428..2006880) /gene="ftsA" /locus_tag="AGROH133_07408" /note="Cell division protein FtsA; Region: FtsA; cl11496" /db_xref="CDD:196250" gene complement(2007567..2008499) /gene="ftsQ" /locus_tag="AGROH133_07409" /db_xref="GeneID:10267800" CDS complement(2007567..2008499) /gene="ftsQ" /locus_tag="AGROH133_07409" /note="Cell division septal protein" /codon_start=1 /transl_table=11 /product="Cell division protein ftsQ" /protein_id="YP_004279323.1" /db_xref="GI:325293459" /db_xref="GeneID:10267800" /translation="MFAVTGKKSTAKKREQFVATANADDRRVLPRPLRRFVRFGVSLA TGRIHIPAHTGTISAVAFYAVIGLYGMSLGGHTNIVTQTTTSAAGFAVEDVKVSGNLQ TSEIEVFQLLGLDGSTSLIALDIDAARRKLVQLPWVEDVDIRKVYPKTVEVRLKEREA FGIWQHGTELSLIEKSGSVIAPLRDNKFAALPLFVGRDAETGAAGFVAQLADWPEIRN RVRAYVRIAGRRWDLHLDNGIVVKLPEENLPQALQLLARLDLEEKVLSRDVAAVDLRL TDRTTIQLTEGAAERRQTAVDARTKALKKAEKNT" misc_feature complement(2007609..2008361) /gene="ftsQ" /locus_tag="AGROH133_07409" /note="Cell division septal protein [Cell envelope biogenesis, outer membrane]; Region: FtsQ; COG1589" /db_xref="CDD:31777" misc_feature complement(2008026..2008226) /gene="ftsQ" /locus_tag="AGROH133_07409" /note="POTRA domain, FtsQ-type; Region: POTRA_1; pfam08478" /db_xref="CDD:149506" misc_feature complement(2007675..2008019) /gene="ftsQ" /locus_tag="AGROH133_07409" /note="Cell division protein FtsQ; Region: FtsQ; pfam03799" /db_xref="CDD:190754" gene complement(2008487..2009413) /gene="ddl" /locus_tag="AGROH133_07410" /db_xref="GeneID:10267801" CDS complement(2008487..2009413) /gene="ddl" /locus_tag="AGROH133_07410" /EC_number="6.3.2.4" /note="D-alanine-D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine-D-alanine ligase and related ATP- grasp enzymes" /codon_start=1 /transl_table=11 /product="D-alanine-D-alanine ligase" /protein_id="YP_004279324.1" /db_xref="GI:325293460" /db_xref="GeneID:10267801" /translation="MGGKHVAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVG RDIAAVLGELRPDVAFNALHGPFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAK KVAAAAGIPVADERVMNRFEFTSEHPLAPPYVVKPVREGSSFGVVIVKEDQSHPPQIL TSSEWRYGDHVMVERYIHGRELTCGVLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKH VIPAEISPKIYQKIQTLAVMAHRAIGCRGVSRSDFRYDDRFSEDGEVIWLEVNTQPGM TPTSLVPEMAAHAGRSFGNLVSWMVEDASCLR" misc_feature complement(2008490..2009413) /gene="ddl" /locus_tag="AGROH133_07410" /note="D-alanine--D-alanine ligase; Reviewed; Region: ddl; PRK01372" /db_xref="CDD:179288" misc_feature complement(2009153..2009404) /gene="ddl" /locus_tag="AGROH133_07410" /note="D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820" /db_xref="CDD:190121" misc_feature complement(2008508..2009089) /gene="ddl" /locus_tag="AGROH133_07410" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" gene 2009956..2011260 /locus_tag="AGROH133_07411" /db_xref="GeneID:10267802" CDS 2009956..2011260 /locus_tag="AGROH133_07411" /note="Major facilitator superfamily" /codon_start=1 /transl_table=11 /product="metabolite-proton symporter" /protein_id="YP_004279325.1" /db_xref="GI:325293461" /db_xref="GeneID:10267802" /translation="MTDAISPVSPTAGNSNVVKTNSPARVLTASLVGTTIEFFDFYVY ATAAVLVFPTLFFPNNDPMTALLASFATFSIAFFARPLGAVVFGHYGDRVGRKATLVA ALLTMGVSTVVIGLLPSYETAGVLAPLLLALCRFGQGFGLGGEWGGAVLLATENAPPG KRSWYGMFPQLGAPVGLFLSSGVFWILLHFMSQEALLSWGWRIPFVASIILIAVGMWV RLSITETPAFQKAIEKEERVAVPVVELFRNHKRSLALGTFVALATFVLFYIGTAYLLS YNVKVLKIPFLDALEVQIMGSIVFGIFIPIAGKLAERFGRREILILTTVLIGLFSFLL PTLMTGGEGSIFIFAALAMTLMGMTYGLIGTALAAPFPTRVRYTGSSITFNMAGIFGA SLAPYIATWLQVNYGMGYVGYYLCVSALITLACILLSRKDEV" misc_feature 2010052..2011224 /locus_tag="AGROH133_07411" /note="metabolite-proton symporter; Region: 2A0106; TIGR00883" /db_xref="CDD:188094" misc_feature 2010199..2011239 /locus_tag="AGROH133_07411" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(2010205..2010210,2010214..2010219,2010379..2010384, 2010391..2010396,2010403..2010408,2010415..2010417, 2010451..2010456,2010463..2010468,2010484..2010486, 2010745..2010747,2010754..2010759,2010766..2010771, 2010778..2010780,2010820..2010822,2010832..2010834, 2010844..2010846,2010853..2010855,2010865..2010867, 2011012..2011014,2011021..2011026,2011033..2011035, 2011045..2011050,2011057..2011059,2011090..2011095, 2011105..2011110,2011117..2011122,2011129..2011131) /locus_tag="AGROH133_07411" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(2011329..2012171) /locus_tag="AGROH133_07423" /db_xref="GeneID:10267803" CDS complement(2011329..2012171) /locus_tag="AGROH133_07423" /note="diguanylate cyclase (GGDEF) domain; FOG: GGDEF domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004279326.1" /db_xref="GI:325293462" /db_xref="GeneID:10267803" /translation="MSIFIADRVSGQLSRFLSELVAITTFTVATPDGWRRLDPVQSSF RLACLIASIAAVICVVAILTMAQLDLVSDLSNGLTIGLVLSTTISFTVGFLICWLNAR QMQLLIQSHERFAQLSQTDALTGLHNRLGLYSNCVHLSTPYCVAFIDIDHFKSVNDRY GHLAGDMVISSVAKTIREGFDEAAHVARMGGEEFVVVHTLAPDRFLELCEGVREKIAT TTVHFQDLQISTTISIGVALRGNREIFEKVMHSADMALYEAKRSGRNRICSSGAKGGR QIIA" misc_feature complement(2011368..2011817) /locus_tag="AGROH133_07423" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(2011596..2011598,2011725..2011727)) /locus_tag="AGROH133_07423" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(2011593..2011604,2011608..2011610, 2011674..2011676,2011686..2011688,2011698..2011703, 2011710..2011712)) /locus_tag="AGROH133_07423" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(2011539..2011541,2011620..2011622)) /locus_tag="AGROH133_07423" /note="I-site; other site" /db_xref="CDD:143635" gene complement(2012372..2013337) /gene="murB" /locus_tag="AGROH133_07426" /db_xref="GeneID:10267804" CDS complement(2012372..2013337) /gene="murB" /locus_tag="AGROH133_07426" /EC_number="1.1.1.158" /note="catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylmuramate dehydrogenase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylenolpyruvoylglucosamine reductase" /protein_id="YP_004279327.1" /db_xref="GI:325293463" /db_xref="GeneID:10267804" /translation="MRQVDGVKLLGRLGDGVKELRGRLTPDAPMDRVTWFRAGGLAEV MFQPHDTDDLVTFLKILPEDVPLTVVGVGSNLLVRDGGIPGVVVRLSAKGFGSVELSG ENRIKAGAICPDKHIAAMAMDNGIGGFHFYYGIPGSIGGALRMNAGANGGETRERVVE VYAVDRQGNQHVLSNADMDYSYRHSGADAGLIFTGALFEGYPEDRAKIRADMDAVRHH RETVQPIREQTGGSTFKNPEGHSAWELIDEAGGRGLVIGGAQMSSLHCNFMINTGHAT GYDLEYLGETIRKRVFEKSGIRLEWEIKRLGLFMPGREVEPFLGA" misc_feature complement(2012411..2013301) /gene="murB" /locus_tag="AGROH133_07426" /note="UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: murB; PRK13905" /db_xref="CDD:184385" misc_feature complement(2012816..2013214) /gene="murB" /locus_tag="AGROH133_07426" /note="FAD binding domain; Region: FAD_binding_4; pfam01565" /db_xref="CDD:190040" misc_feature complement(2012417..2012725) /gene="murB" /locus_tag="AGROH133_07426" /note="UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873" /db_xref="CDD:111727" gene complement(2013334..2014749) /gene="murC" /locus_tag="AGROH133_07427" /db_xref="GeneID:10267805" CDS complement(2013334..2014749) /gene="murC" /locus_tag="AGROH133_07427" /EC_number="6.3.2.8" /note="Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramate-alanine ligase" /protein_id="YP_004279328.1" /db_xref="GI:325293464" /db_xref="GeneID:10267805" /translation="MKMPKAIGLVHFIGIGGIGMSGIAEVLHNLGHRVQGSDQADSAN VQRLRDKGIEVFVGHTADNLGDAEVVVVSTAIKKNNPELIAAREKHLPIVRRAEMLAE LMRFRNAIAIGGTHGKTTTTSMVATLLEAGNLDPTVINGGIINAYGTNARMGEGEWMV VEADESDGTFLKLPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCL DHPEVQALVGRIEDRKVITYGENPQADVRFSNVRIDGTRSIFDVEIRRRRTGKIFSFT DLVLPMPGRHNVSNATAAIAVANRLGISEADIKKGLASFAGVKRRFTLTGEANGVQVF DDYGHHPVEIKAVLAAAREACKGRIVAVHQPHRYSRLSSLFDDFAHCFNDADTIILAP VYAAGEDPIEGASSEALVSAIKAAGHRDARFLEKREDLASMVAGIANPGDFVVLLGAG NITQWAAVLPSELKSISGKSE" misc_feature complement(2013346..2014749) /gene="murC" /locus_tag="AGROH133_07427" /note="UDP-N-acetylmuramate--L-alanine ligase; Provisional; Region: murC; PRK00421" /db_xref="CDD:179018" misc_feature complement(2014429..2014722) /gene="murC" /locus_tag="AGROH133_07427" /note="Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225" /db_xref="CDD:144716" misc_feature complement(2013856..2014416) /gene="murC" /locus_tag="AGROH133_07427" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" misc_feature complement(2013538..2013798) /gene="murC" /locus_tag="AGROH133_07427" /note="Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875" /db_xref="CDD:190458" gene complement(2014746..2015882) /gene="murG" /locus_tag="AGROH133_07429" /db_xref="GeneID:10267806" CDS complement(2014746..2015882) /gene="murG" /locus_tag="AGROH133_07429" /EC_number="2.4.1.227" /note="UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase" /codon_start=1 /transl_table=11 /product="undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase" /protein_id="YP_004279329.1" /db_xref="GI:325293465" /db_xref="GeneID:10267806" /translation="MSKGIVLLAAGGTGGHVFPAEALAHTLKARGYQVHLVTDSRAER YAGKFPAEEIHVVPSATIGSKNPISVARSLWKLWTGLRSARRLITKLKPVAVVGFGGY PTVPPLLASTGLGVPSIIHEQNAVMGRANKALAARVKAIAGGFLPPANGQYSDKTVAT GNPVRPAVLAASEIPYTPSQTGETFQLVVFGGSQGAQFFSSAVPAAICLLKDEQRKRI VVTQQARPEDKDSVISSYQKLGVKADVSPFFGDMASRIGEADLVISRSGASTVSELSV IGRPSILVPYPHALDHDQAANAAALSAAGGASVIKQSELSPQKLSGLLSSALSEPDRL SATAAAAKATGKPHAADVLADLVEAIASGKSVQEFKKNIEGVEA" misc_feature complement(2014794..2015867) /gene="murG" /locus_tag="AGROH133_07429" /note="undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional; Region: murG; PRK00726" /db_xref="CDD:179100" misc_feature complement(2014815..2015867) /gene="murG" /locus_tag="AGROH133_07429" /note="MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl...; Region: GT1_MurG; cd03785" /db_xref="CDD:99961" misc_feature complement(order(2014992..2014994,2015001..2015006, 2015025..2015027,2015064..2015066,2015073..2015084, 2015127..2015129,2015139..2015141,2015214..2015216, 2015304..2015306,2015511..2015513,2015838..2015840)) /gene="murG" /locus_tag="AGROH133_07429" /note="active site" /db_xref="CDD:99961" misc_feature complement(order(2015469..2015471,2015544..2015546, 2015628..2015630,2015661..2015663,2015670..2015672)) /gene="murG" /locus_tag="AGROH133_07429" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99961" gene complement(2015889..2017043) /gene="ftsW" /locus_tag="AGROH133_07430" /db_xref="GeneID:10267807" CDS complement(2015889..2017043) /gene="ftsW" /locus_tag="AGROH133_07430" /note="Bacterial cell division membrane protein" /codon_start=1 /transl_table=11 /product="Cell division protein ftsW" /protein_id="YP_004279330.1" /db_xref="GI:325293466" /db_xref="GeneID:10267807" /translation="MVSRVDRGPVAEWFWTIDRFFLAAFIALMGIGLMLSFAASPAVA ERIGLNSFFFVERQAMFMVPSLAIMIGLSFLSPRQVRRVAVMMLIASLLMMIFALFFG IEVKGARRWISIGSFSIQPSEFMKPAFVIVCAWLFAERARHPEIPGNLFAIITFGIVA ALLIAQPDFGQTILTSVVWGGMFFMAGVPWFWIIVLGGLGVLGIVSAYLLLPHVAGRI DRFWTGEGDTFQVDTAREAIIRGDWFGRGPGEGIVKRIIPDSHTDFIFSVAAEEFGIV FCMFLVAIFAFIVLRGLSHAFREKDDFCRFAVAGLVLQIGMQSMINIGVNLELMPAKG MTLPLISYGGSSMMAICVTAGFLLALTRHRPEKRAQERSFFRVGSGVPAE" misc_feature complement(2015952..2016992) /gene="ftsW" /locus_tag="AGROH133_07430" /note="Cell cycle protein; Region: FTSW_RODA_SPOVE; cl00511" /db_xref="CDD:189110" gene complement(2017048..2018457) /gene="murD" /locus_tag="AGROH133_07441" /db_xref="GeneID:10267808" CDS complement(2017048..2018457) /gene="murD" /locus_tag="AGROH133_07441" /EC_number="6.3.2.9" /note="UDP-N-acetylmuramoylalanine-D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoylalanine-D-glutamate ligase" /protein_id="YP_004279331.1" /db_xref="GI:325293467" /db_xref="GeneID:10267808" /translation="MIPVSSFRGKKVALFGLGGSGLVTARALVAGGADVVAFDDNPDS VAKAQAEGIPTADLRTIDWHSFSSFVLAPGVPLTHPKPHWSVDLARAAGVEIIGDIEL FIRERRAHAPDCPFIAITGTNGKSTTTALIAHILKASGRDTQLGGNIGTAVLSLDPPK AQRFYVVECSSYQIDLAPTINPTAGILLNLTPDHLDRHGTMQHYADVKERLVAGSGTA IVGVDDSYSTLIADRIERAGVKVERISKRNVVSEGLYAEGSRILRAHGGKSSLLVDLD GIQTLRGSHNAQNAAAAIAACLAVGVSEEDVRAGLKSFPGLKHRMQPVGRRGNVTFVN DSKATNADAAAPALSSYERIYWIAGGLPKAGGIASLAPLFPRIAKAYLIGEAAAEFAA TLGEAVPYEISGTLDKAVQHAAADAEKDATAGSIVMLSPACASFDQYKNFEIRGDSFV AQVAALDGMTMLVHSGKGG" misc_feature complement(2017084..2018457) /gene="murD" /locus_tag="AGROH133_07441" /note="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional; Region: murD; PRK01390" /db_xref="CDD:179291" misc_feature complement(<2018287..2018427) /gene="murD" /locus_tag="AGROH133_07441" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(2017600..2018103) /gene="murD" /locus_tag="AGROH133_07441" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" misc_feature complement(<2017315..2017506) /gene="murD" /locus_tag="AGROH133_07441" /note="Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875" /db_xref="CDD:190458" gene complement(2018461..2019561) /gene="mraY" /locus_tag="AGROH133_07443" /db_xref="GeneID:10267809" CDS complement(2018461..2019561) /gene="mraY" /locus_tag="AGROH133_07443" /EC_number="2.7.8.13" /note="First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase" /codon_start=1 /transl_table=11 /product="phospho-N-acetylmuramoyl-pentapeptide- transferase" /protein_id="YP_004279332.1" /db_xref="GI:325293468" /db_xref="GeneID:10267809" /translation="MLIWLVELSDKIQVFNLFRYITFRAGAAMFTSALIVFLFGPAII NSLRVRQGKGQPIRADGPQTHFKKAGTPTMGGLMILAGILGGSLLWGDLSNVYVVAVL MVTLGFGAIGFYDDYLKVTKQSDKGFSGKARLGIEFLIAAIAVFFMMKVALASAPHGG TLGSSIAFPFFKELVINLGYFFVLFGAFVIVGAGNAVNLTDGLDGLAIVPVMIAAATF GVIAYLAGNAVFANYLQINFVPGTGELAVIVGAVVGAGLGFLWFNAPPAAIFMGDTGS LALGGLIGSIAVATKHEIVMVIVGGLFVMETLSVIIQVFWFKRTGRRVFLMAPIHHHF EKKGWTESQVVIRFWIISVGLALLGLATLKLR" misc_feature complement(2018503..2019519) /gene="mraY" /locus_tag="AGROH133_07443" /note="phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional; Region: mraY; PRK00108" /db_xref="CDD:178869" misc_feature complement(2018503..2019381) /gene="mraY" /locus_tag="AGROH133_07443" /note="Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-...; Region: GT_MraY; cd06852" /db_xref="CDD:133462" misc_feature complement(2019214..2019219) /gene="mraY" /locus_tag="AGROH133_07443" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133462" misc_feature complement(2018743..2018754) /gene="mraY" /locus_tag="AGROH133_07443" /note="putative catalytic motif [active]" /db_xref="CDD:133462" misc_feature complement(order(2018563..2018577,2018593..2018595)) /gene="mraY" /locus_tag="AGROH133_07443" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:133462" gene complement(2019585..2021018) /gene="murF" /locus_tag="AGROH133_07454" /db_xref="GeneID:10267810" CDS complement(2019585..2021018) /gene="murF" /locus_tag="AGROH133_07454" /EC_number="6.3.2.10" /note="UDP-MurNAc-pentapeptide synthetase; UDP-N-acetylmuramyl pentapeptide synthase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase" /protein_id="YP_004279333.1" /db_xref="GI:325293469" /db_xref="GeneID:10267810" /translation="MNWLWTVADMIAITAGRPVGNLPTGITGISIDSRTVKAGEAFFA IKGDRVDGHDYTSFAVANGAGLLVVAEGKLPALGRLTVPMIVVEDVLAALGKLAIAAR ERTTARIIAVTGSVGKTTTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTE FGVFEIGMNHSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGLED GGFVILNRDNAQFEQLEEAAQDQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILN GETSELHLNIPGRHIADNAMAVLGAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIE SGSFLLIDESYNANPASMRAAIAVLAETETQGYGRRVAVLGDMLEMGEFSAQLHEELA GPLLAGGIEHVWLAGEAMAALRDALPDSVTVIWFPTTAELADFALQWVQPGDALMVKS SLGLGFGKIVAALLDKYPAFPETERQV" misc_feature complement(2019612..2021009) /gene="murF" /locus_tag="AGROH133_07454" /note="UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional; Region: PRK14093" /db_xref="CDD:184501" misc_feature complement(2020728..2020943) /gene="murF" /locus_tag="AGROH133_07454" /note="Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225" /db_xref="CDD:144716" misc_feature complement(2020113..2020679) /gene="murF" /locus_tag="AGROH133_07454" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" misc_feature complement(2019846..2020037) /gene="murF" /locus_tag="AGROH133_07454" /note="Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875" /db_xref="CDD:190458" gene complement(2021015..2022475) /gene="murE" /locus_tag="AGROH133_07455" /db_xref="GeneID:10267811" CDS complement(2021015..2022475) /gene="murE" /locus_tag="AGROH133_07455" /EC_number="6.3.2.13" /note="involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramyl tripeptide synthase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase" /protein_id="YP_004279334.1" /db_xref="GI:325293470" /db_xref="GeneID:10267811" /translation="MNLRDISGTAFPELNELLLSEIGAIEIGGITADSRKAAPGSLFV AVAGTKADGAAYVKDAVAKGAVAVVSGHAVDADVPVLAVTDPRLYLSLAASRFYGKQP ETMVAVTGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLH ALLAELAAEGVTHAAMEASSHGLDQRRLDGVKLAAAGFTNLGRDHMDYHPTIEDYMAA KMRLFDTLMEKGAPAVIFADDPWSDKAIRAAADAGLNVRTVGRKGDYLTLKRVEHFRH KQLIEVHHDGVIHEVDIPLAGDFQVANALVAAGLAMSTGVSAATAMKALEKLIGAAGR LELVGQTKNGALAYVDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMG EVATRLSDIVIVTDDNPRSEDAATIRSEVMAAAPGALEIGDRAEAIRHAVSLLSNGDT LIVAGKGHEEGQIVGSVTLPFSDHEQVRTALEGLKI" misc_feature complement(2021024..2022385) /gene="murE" /locus_tag="AGROH133_07455" /note="UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional; Region: murE; PRK00139" /db_xref="CDD:178894" misc_feature complement(2021543..2022154) /gene="murE" /locus_tag="AGROH133_07455" /note="Mur ligase middle domain; Region: Mur_ligase_M; pfam08245" /db_xref="CDD:191979" misc_feature complement(2021237..2021479) /gene="murE" /locus_tag="AGROH133_07455" /note="Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875" /db_xref="CDD:190458" gene complement(2022535..2024277) /gene="phpB1" /locus_tag="AGROH133_07456" /db_xref="GeneID:10267812" CDS complement(2022535..2024277) /gene="phpB1" /locus_tag="AGROH133_07456" /note="penicillin binding protein transpeptidase domain; Cell division protein FtsI/penicillin-binding protein 2" /codon_start=1 /transl_table=11 /product="penicillin binding protein 2" /protein_id="YP_004279335.1" /db_xref="GI:325293471" /db_xref="GeneID:10267812" /translation="MSFLSRVMVLKSKAHFSASTTGIHTDHAAFEGARKKRAAQAKSR VGLIIFGFIAFYGVVGGRLVQYGLAEQETVSSIAPADRLMASRPDLLDRNGEVLATDI RTVSLFAEPHRIVDIDEAIEKLRTVLPDLDQRGTYQKLSSNSRFQWLRRQLTPKQQSQ ILALGIPGVGFRPEKRRFYPGGPTAAHVVGHVNIDNRGVAGMERYVDSQGLADLTALG MTSDQPLEPVKLSIDLRVQSIVREVVTSAITKFQAIGAGAVVLDVHTGEVLAMASVPD YDPNNPAEGAKEGWLNRMSNGTFEMGSTFKSFTIAMGLDSGRVRLGDMFDARYPIRIG GFTIKDFHGKGRMLSVPEIFQYSSNIGTAKIADTVGTEGHKEFLTRLGLLTRMQTELP EVALPSQPREWKKINSITISFGHGVSTTPLQTAVAGAALVNGGKLIEPTFLPRTREQA DQVAKQVLKPGASKDMRFLFEWNGVNGSGRNARVDGFNVGGKTGTADKVVNGRYVHDK NFNAFLSAFPMDDPQYVVLSFIDEPKTDKGNGAALAGTSAAPMVHDIISRTAAVLGVK PKFGKDGSALLVSY" misc_feature complement(2022571..2024145) /gene="phpB1" /locus_tag="AGROH133_07456" /note="Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; Region: FtsI; COG0768" /db_xref="CDD:31111" misc_feature complement(2023651..2024031) /gene="phpB1" /locus_tag="AGROH133_07456" /note="Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717" /db_xref="CDD:190723" misc_feature complement(2022610..2023512) /gene="phpB1" /locus_tag="AGROH133_07456" /note="Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01039" /db_xref="CDD:154162" gene complement(2024277..2024837) /locus_tag="AGROH133_07458" /db_xref="GeneID:10267813" CDS complement(2024277..2024837) /locus_tag="AGROH133_07458" /note="Predicted secreted (periplasmic) protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279336.1" /db_xref="GI:325293472" /db_xref="GeneID:10267813" /translation="MLRTFDVVLMGVMVAAAVVTYSIKHKTDLKLEQVRKLETEIKLE KDTIDLLRADWALLTQPNRLHRLVNAYQDELGLSPTLPTQLAQPRELPMLRSQLPQPP EPEGMSVADVIAAAVNGSKPGATLGGAAKKKSPPAGQIAANGAPVPTPRARVSRPTAA PAPAVAAVAGDEDGEMDETITGSVDR" misc_feature complement(2024424..2024837) /locus_tag="AGROH133_07458" /note="Predicted secreted (periplasmic) protein [Function unknown]; Region: COG5462" /db_xref="CDD:35021" gene complement(2024839..2025864) /gene="mraW" /locus_tag="AGROH133_07459" /db_xref="GeneID:10267814" CDS complement(2024839..2025864) /gene="mraW" /locus_tag="AGROH133_07459" /EC_number="2.1.1.-" /note="Bacterial methyltransferase, MraW methylase family; Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis" /codon_start=1 /transl_table=11 /product="S-adenosyl-methyltransferase MraW" /protein_id="YP_004279337.1" /db_xref="GI:325293473" /db_xref="GeneID:10267814" /translation="MAANSGGRSSDAGEGPQRHIPVLLREVIAALEPASGKVILDGTF GAGGYTQAILDQGANVIALDRDPNAIAGGQAMVAANGGRLTLIQSQFSDLARHAPEGG LDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSSSGVSAADVVNRAKVGDLIRIFG FLGEEKQPGRIARAIEKRRAEEPFRTTRDLAGLIEIVTPRKAKDKIHPATRVFQALRV FVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVKKFFSERSGKAAGSRHLPM VEDKPAIFENIGKPMVAASDEEAEINPRARSAKLRAGLRTAAPARAADFSIFELPDLA SLEKMGG" misc_feature complement(2024935..2025828) /gene="mraW" /locus_tag="AGROH133_07459" /note="Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]; Region: COG0275" /db_xref="CDD:30623" misc_feature complement(2024935..2025813) /gene="mraW" /locus_tag="AGROH133_07459" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(2025879..2026319) /gene="mraZ" /locus_tag="AGROH133_07460" /db_xref="GeneID:10267815" CDS complement(2025879..2026319) /gene="mraZ" /locus_tag="AGROH133_07460" /note="MraZ; UPF0040; crystal structure shows similarity to AbrB; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="cell division protein MraZ" /protein_id="YP_004279338.1" /db_xref="GI:325293474" /db_xref="GeneID:10267815" /translation="MDRFLSNVTNRIDAKGRVSVPSPFRSVLAQRGIQELYCLQDFAF PAISVGGPDLLERYERQIASMDAFSPEANAMSLLVHGGGVFMKLDQEGRLTVTDFVRE FTGISTDVTFVGRADHFQLWQPQAFLAAQAAARAGRGFSAARPA" misc_feature complement(2025954..2026313) /gene="mraZ" /locus_tag="AGROH133_07460" /note="cell division protein MraZ; Reviewed; Region: PRK00326" /db_xref="CDD:178978" gene complement(2027181..2028371) /gene="solA1" /locus_tag="AGROH133_07461" /db_xref="GeneID:10267816" CDS complement(2027181..2028371) /gene="solA1" /locus_tag="AGROH133_07461" /EC_number="1.5.3.1" /note="FAD dependent oxidoreductase; glycine/D-amino acid oxidases (deaminating)" /codon_start=1 /transl_table=11 /product="sarcosine oxidase" /protein_id="YP_004279339.1" /db_xref="GI:325293475" /db_xref="GeneID:10267816" /translation="MSGHFKYIVVGRGMMGAAAARHLAENTEGVALIGPGEPADIKSH PGVFASHYDEARITRTIDGDADWALLANRSIARYTDIAARSGVEFYAPVGCLMVGPER GGDNPFVNNVCEAAARLRVSTEMLDDAGLKSAFPYFSFEPGCEGVFEKDNAGYVNPRA LVKAQSVLADKAGVTLIDDIVVSTREEAGRARVETASGAVYTADRVLVAAGGFSITKD LLPQPVALNVYARTVAFFEVDEAELGQYAGMPSLIYEPRDTTKHIYLLPPVRYPDGRF YLKIGGDPDDKKLDSDPEIRAWFRSGGRESVRDHLSAIVGTLVPSIDRSRISMAACVV SKTPGGYPAIGFTTSPCIAVLTGGNGTAAKSSDEIGRLGALLLRDGKIGNDAYATDFK PAFL" misc_feature complement(2027193..2028371) /gene="solA1" /locus_tag="AGROH133_07461" /note="Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:31009" misc_feature complement(2027352..2028350) /gene="solA1" /locus_tag="AGROH133_07461" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" gene complement(2028437..2029624) /gene="solA2" /locus_tag="AGROH133_07462" /db_xref="GeneID:10267817" CDS complement(2028437..2029624) /gene="solA2" /locus_tag="AGROH133_07462" /EC_number="1.5.3.1" /note="FAD dependent oxidoreductase; glycine/D-amino acid oxidases (deaminating)" /codon_start=1 /transl_table=11 /product="sarcosine oxidase" /protein_id="YP_004279340.1" /db_xref="GI:325293476" /db_xref="GeneID:10267817" /translation="MPDFKYIVVGAGMMGAAAARHLSAQTDGVALIGPDEPADRKTHN GVFSSHYDEARITRGFDGDPVWAELAQRSIRRYAEIEAKSGIRFFTEAGCLFTGNGKG LAGDYVSRALVSTDRLGLGVETIGSDALAARFPMFSLPSDHDGYFEAQNAGHVNPRAL VRAQCTIAAAQGARLIRETAAHVRDTSRGVEVSTREGAVHTAEKVIVAAGGFTNMADL LPSPVDMAATGRTIVFFELDEARQALFGSMPSTIVLAGTEDDIVYILPPVRYPDGKVY LKIGGESEKGRLETLAEAVGWFHSDGTPGEVEFLTKRALSLMPELAGCPVTSGSCVAS ITRSGYPYIGYTQSSNIAVLTGGNFVSAKSSDEIGRLGAVLLLDGQLTESDFAAEMSP VFI" misc_feature complement(2028449..2029624) /gene="solA2" /locus_tag="AGROH133_07462" /note="Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:31009" misc_feature complement(<2028785..2029480) /gene="solA2" /locus_tag="AGROH133_07462" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" gene complement(2029811..2030350) /gene="slt" /locus_tag="AGROH133_07463" /db_xref="GeneID:10267818" CDS complement(2029811..2030350) /gene="slt" /locus_tag="AGROH133_07463" /EC_number="3.2.1.-" /note="Lytic transglycosylase-like, catalytic; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)" /codon_start=1 /transl_table=11 /product="soluble lytic transglycosylase" /protein_id="YP_004279341.1" /db_xref="GI:325293477" /db_xref="GeneID:10267818" /translation="MNRVFVAVAAGVAMLVSQAGIAFAKDEDVRTKTVTLGTFFRTPG YPVPEKSLPSSLKNDYSDLIVKYAKRYGVPTNLAHAVVSVESKFNPRARGSAGEVGLM QIKPATARMMGFRGTTKALFDPETNIRWGMQYLATAHQLGGGEVCSTILRYNAGHGAT RMNPVSKRYCGKVQALLAS" misc_feature complement(2029817..2030125) /gene="slt" /locus_tag="AGROH133_07463" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature complement(order(2029892..2029894,2029949..2029951, 2030036..2030038,2030096..2030098)) /gene="slt" /locus_tag="AGROH133_07463" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature complement(2030096..2030098) /gene="slt" /locus_tag="AGROH133_07463" /note="catalytic residue [active]" /db_xref="CDD:29556" gene complement(2030598..2031377) /locus_tag="AGROH133_07466" /db_xref="GeneID:10267819" CDS complement(2030598..2031377) /locus_tag="AGROH133_07466" /EC_number="3.5.1.28" /note="N-acetylmuramoyl-L-alanine amidase, family 2; N-acetyl-anhydromuramyl-L-alanine amidase" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="YP_004279342.1" /db_xref="GI:325293478" /db_xref="GeneID:10267819" /translation="MSEFLPDFKPDFGGATIAPSPNHGERQGVAGPDIILLHYTGMTT ADGALSWLCNPESQVSSHYFVFEDGRVMQLVAETRRAWHAGKSSWAGEADINSRSIGI EIANQGHPGGLPEFPEKQVAAVIELCRDCGQRWSIAPERVLAHSDVAPIRKVDPGEKF PWDILSRHGVGHWVEPAPIRGGRFFQRGDHGQPVEALQSMLSIYGYGVEITGAYCEKT EGAVAAFQRHFRPALVDGIADFSTIDTLHRLIASLPKFSAV" misc_feature complement(2030622..2031365) /locus_tag="AGROH133_07466" /note="N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: ampD; COG3023" /db_xref="CDD:32839" misc_feature complement(2030901..2031284) /locus_tag="AGROH133_07466" /note="Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20...; Region: PGRP; cd06583" /db_xref="CDD:133475" misc_feature complement(order(2030913..2030915,2030919..2030921, 2030943..2030945,2031195..2031197,2031264..2031266)) /locus_tag="AGROH133_07466" /note="amidase catalytic site [active]" /db_xref="CDD:133475" misc_feature complement(order(2030913..2030915,2030943..2030945, 2031264..2031266)) /locus_tag="AGROH133_07466" /note="Zn binding residues [ion binding]; other site" /db_xref="CDD:133475" misc_feature complement(order(2030913..2030921,2030931..2030933, 2030943..2030945,2031090..2031092,2031129..2031134, 2031153..2031155,2031195..2031197,2031207..2031209, 2031258..2031263)) /locus_tag="AGROH133_07466" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133475" misc_feature complement(2030640..2030810) /locus_tag="AGROH133_07466" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene complement(2031374..2032114) /gene="djlA" /locus_tag="AGROH133_07467" /db_xref="GeneID:10267820" CDS complement(2031374..2032114) /gene="djlA" /locus_tag="AGROH133_07467" /note="Protein of unknown function DUF1332; DnaJ-domain-containing proteins 1" /codon_start=1 /transl_table=11 /product="DnaJ family molecular chaperone" /protein_id="YP_004279343.1" /db_xref="GI:325293479" /db_xref="GeneID:10267820" /translation="MMFDFACLHISSLWERLLGAIGDAAGSTLGRVVEAIRTLFEGDP ETRRKVSFSVAIIALSAKMAKADGVVNDAEVRAFRQIFDFPEEEARNVARLYNLARQD VAGYEAYAERLAGLCGSGHDNCEMLESVIDGLFHIAKADGLIHERELAFLGRIAEIFH ITEDHFETIMARHVHMDGRDPYRVLGVSPSDDFLDIRKRYRSLVAEHHPDKLIARGVP MELHAAANERMAALNAAYEAIEKERRVA" misc_feature complement(2031383..2032069) /gene="djlA" /locus_tag="AGROH133_07467" /note="Dna-J like membrane chaperone protein; Provisional; Region: djlA; PRK09430" /db_xref="CDD:181850" misc_feature complement(2031638..2031952) /gene="djlA" /locus_tag="AGROH133_07467" /note="N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins; Region: terB_like_DjlA; cd07316" /db_xref="CDD:143585" misc_feature complement(order(2031671..2031673,2031692..2031694, 2031893..2031895,2031914..2031916)) /gene="djlA" /locus_tag="AGROH133_07467" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:143585" misc_feature complement(<2031482..2031577) /gene="djlA" /locus_tag="AGROH133_07467" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of...; Region: DnaJ; cd06257" /db_xref="CDD:99751" gene 2032433..2033644 /gene="pfp" /locus_tag="AGROH133_07468" /db_xref="GeneID:10267821" CDS 2032433..2033644 /gene="pfp" /locus_tag="AGROH133_07468" /EC_number="2.7.1.90" /note="catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; 6-phosphofructokinase" /codon_start=1 /transl_table=11 /product="pyrophosphate-fructose-6-phosphate 1-phosphotransferase" /protein_id="YP_004279344.1" /db_xref="GI:325293480" /db_xref="GeneID:10267821" /translation="MAKQKVAMLTAGGLAPCLSSAVGGLIERYSDVAPDIDIVAYRSG YQGVLLGDRIEINKDMREKAHLLHRYGGSPIGNSRVKLTNAADCAKRGLVKEGENPLR VAAERLAADGITILHTIGGDDTNTTAADLAAYLGANGYDLTVVGLPKTVDNDVVPIRQ SLGAWTAAEVGASFFDNVSNEQSAAPKTFVIHEVMGRHCGWLTAATARAYIQKTNGNE YVEGLMMNTQMKNIDGIYLPEMAFDIEAEAERLKAIMDKHGYVTLFVSEGAGLDSIVA EREAAGEAVKRDAFGHVKIDTINVGGWFQKQFAGLIGAERSMVQKSGYFARSAPANGD DLRLIQGMVDLAVESALNKVSGVTGHDEDQKGKLRTIEFPRIKGGKHFDLSAKWFTEV MEHVGQPFTAA" misc_feature 2032433..2033641 /gene="pfp" /locus_tag="AGROH133_07468" /note="pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated; Region: PRK06555" /db_xref="CDD:180620" misc_feature 2032445..>2033059 /gene="pfp" /locus_tag="AGROH133_07468" /note="Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases...; Region: PFK; cl00204" /db_xref="CDD:193705" misc_feature order(2032469..2032471,2032565..2032567,2032667..2032669, 2032796..2032804,2032808..2032813,2032880..2032882, 2032886..2032888,2032892..2032894,2033015..2033023) /gene="pfp" /locus_tag="AGROH133_07468" /note="active site" /db_xref="CDD:29437" misc_feature order(2032469..2032471,2032565..2032567,2032667..2032669, 2032796..2032804,2032808..2032813) /gene="pfp" /locus_tag="AGROH133_07468" /note="ADP/pyrophosphate binding site [chemical binding]; other site" /db_xref="CDD:29437" misc_feature order(2032499..2032501,2032511..2032513,2032604..2032606, 2032625..2032627,2032634..2032636,2032910..2032912, 2032946..2032948,2032958..2032960,2032967..2032969, 2033054..2033059) /gene="pfp" /locus_tag="AGROH133_07468" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29437" misc_feature order(2032499..2032501,2032511..2032513,2032604..2032609, 2032622..2032627,2032967..2032969) /gene="pfp" /locus_tag="AGROH133_07468" /note="allosteric effector site; other site" /db_xref="CDD:29437" misc_feature <2032853..>2033377 /gene="pfp" /locus_tag="AGROH133_07468" /note="Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases...; Region: PFK; cl00204" /db_xref="CDD:193705" misc_feature order(2032880..2032882,2032886..2032888,2032892..2032894, 2032991..2032993,2033015..2033023) /gene="pfp" /locus_tag="AGROH133_07468" /note="fructose-1,6-bisphosphate binding site; other site" /db_xref="CDD:29437" gene 2033696..2034331 /locus_tag="AGROH133_07469" /db_xref="GeneID:10267822" CDS 2033696..2034331 /locus_tag="AGROH133_07469" /note="Lysine exporter protein (LYSE/YGGA); Putative threonine efflux protein" /codon_start=1 /transl_table=11 /product="Lysine exporter protein" /protein_id="YP_004279345.1" /db_xref="GI:325293481" /db_xref="GeneID:10267822" /translation="MSGQAWLVFCAACAVVFALPSPLVFSVASYAAIRGRKTVFASIT GGALGIVTAMTISAIPAAGLAYLPHAFVEIVQWTGIGWLILFLLWTFATPAAQAANAD NDNLPGKSSSGIFRDCYAIAALRPRYFMFFLALLPQFVSTSGNAVETLAVAQAAILLL ALGILAAQALFAGSTLALVRRMSGNKKIRPKYRTHFISGRAVSAGYRRIAA" misc_feature 2033696..>2034142 /locus_tag="AGROH133_07469" /note="LysE type translocator; Region: LysE; cl00565" /db_xref="CDD:186083" gene 2034457..2035536 /locus_tag="AGROH133_07476" /db_xref="GeneID:10267823" CDS 2034457..2035536 /locus_tag="AGROH133_07476" /EC_number="3.2.1.-" /note="Lytic transglycosylase-like, catalytic; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)" /codon_start=1 /transl_table=11 /product="lytic murein transglycosylase" /protein_id="YP_004279346.1" /db_xref="GI:325293482" /db_xref="GeneID:10267823" /translation="MRNSAKFRGRSALLLSSTVGLALALAGCTSVEYAAKEGPNGPKI AAVNQTAPAQASAQSETAGTPADTAAPAAHATDVAASSQPESLPTVAAVKGGRVALPP AAEIAAAVASPTQMQPQQQQTEVAQATVTTAAPTTAAALAPHATTPAAAAIETASAAA KPAAHNSAADLPQVVAVKGSFPPAPPPPGTPSIGTELTAERKVIPLPKPDSTVLAYAA GPTNAALAAIRQNETMTAPYKSAPAGREKLSGLISKYAVMYNVPEDLVHRVVQRESRY NPGAYNGGHFGLMQIKHATARSMGFDGPASGLFDAETNLKYAVKYLSGAWLVADNNRD NAVRLYARGYYYDAKRKGMLHVLRK" misc_feature 2035246..>2035488 /locus_tag="AGROH133_07476" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(2035273..2035275,2035330..2035332,2035417..2035419, 2035474..2035476) /locus_tag="AGROH133_07476" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 2035273..2035275 /locus_tag="AGROH133_07476" /note="catalytic residue [active]" /db_xref="CDD:29556" gene 2035831..2037081 /gene="btaA" /locus_tag="AGROH133_07479" /db_xref="GeneID:10267824" CDS 2035831..2037081 /gene="btaA" /locus_tag="AGROH133_07479" /note="S-adenosylmethionine:diacylglycerol 3-amino-3- carboxypropyl transferase" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase protein" /protein_id="YP_004279347.1" /db_xref="GI:325293483" /db_xref="GeneID:10267824" /translation="MTSAAPKTGFSKNTKLKSALLQHKALSKSGFSERFFGVLFSGLV YPQIWEDPEIDMEAMELAEGHRIVTIGSGGCNMLAYLSRNPASIDVVDLNPHHIALNK LKLAAFRHLPAHQDVVRQFGRANTRSNSHGYDRFIADHLDDTTKAYWSKRTLSGRRRI SVFDRNIYRTGLLGRFIGAGHLMARLHGVKLTEMANSRTLDEQRRFFDSKVAPLFDKP VVRWLTKRKSSLFGLGIPPRQYDELASLSSDGTVASVLKERLQKLACNFPLSDNYFAW QAFARRYPEPHEGALPAYLKREYYETIRDNTARVAVHHATYTELLSKKPANGVDRYIL LDAQDWMTDVQLNELWSQISRTAAPGARVIFRTAAEKSVIEGRLSADIRNQWIYLEER SNELNAMDRSAIYGGFHIYQRALA" misc_feature 2035831..2037072 /gene="btaA" /locus_tag="AGROH133_07479" /note="S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]; Region: BtaA; COG5379" /db_xref="CDD:34942" misc_feature 2035915..2037072 /gene="btaA" /locus_tag="AGROH133_07479" /note="Protein of unknown function (DUF3419); Region: DUF3419; pfam11899" /db_xref="CDD:152335" gene 2037078..2037794 /gene="btaB" /locus_tag="AGROH133_07480" /db_xref="GeneID:10267825" CDS 2037078..2037794 /gene="btaB" /locus_tag="AGROH133_07480" /EC_number="2.1.1.-" /note="methyltransferase type 11; SAM-dependent methyltransferases" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine-diacylgycerolhomoserine-N- methyltransferase" /protein_id="YP_004279348.1" /db_xref="GI:325293484" /db_xref="GeneID:10267825" /translation="MKTIGENVGLADEAHASLMDRMYRHQRHIYDITRKYYLLGRDRT ISGLDVPKGGTLLEVGCGTGRNLLLASRKFPEARLFGLDISAEMLLTASENFTGKTER PVLRVADATAFRAAEFGQPDGFDRVMIPYALSMIPDWEKAIEQALTALKPGGSLHIVD FGQQEQLPKWFRALLQAWLTRFHVTPRANLRYVLANMAGRFDGNLEFEEIARGYAWRA IITLPVAEVQPKVSRILADA" misc_feature 2037240..2037560 /gene="btaB" /locus_tag="AGROH133_07480" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2037252..2037272,2037324..2037329,2037399..2037407, 2037462..2037464) /gene="btaB" /locus_tag="AGROH133_07480" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 2038040..2038819 /gene="lyc" /locus_tag="AGROH133_07481" /db_xref="GeneID:10267826" CDS 2038040..2038819 /gene="lyc" /locus_tag="AGROH133_07481" /EC_number="3.2.1.-" /note="glycosyl hydrolases family 25; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)" /codon_start=1 /transl_table=11 /product="glycosyl hydrolase/lysozyme" /protein_id="YP_004279349.1" /db_xref="GI:325293485" /db_xref="GeneID:10267826" /translation="MRLRLSALLSAMLLIGGCTSTSYDLLETASVSKPKFSDTDPQDF GTNNPHRHEVHGIDVSKWNGDVDWRTVRKSGVSFVFIKATEGSDRIDPKFGDHWRSAA AADILHAPYHFYYFCSTADAQADWFISNVPKEAVTLPPVLDVEWNPSSPTCKTRPAPG IVRAEMQRFLDRLEAHYGKRPIIYTSVDFHRDNLVGQFKNYHFWVRSVAAHPAKIYED RQWAFWQYTATGVVPGVNGPTDINVFAGSEKNWRKWIASAK" misc_feature 2038199..2038777 /gene="lyc" /locus_tag="AGROH133_07481" /note="Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the...; Region: GH25_muramidase_1; cd06413" /db_xref="CDD:119375" misc_feature 2038208..2038744 /gene="lyc" /locus_tag="AGROH133_07481" /note="Glycosyl hydrolases family 25; Region: Glyco_hydro_25; pfam01183" /db_xref="CDD:144684" misc_feature order(2038211..2038213,2038283..2038285,2038370..2038372, 2038376..2038378,2038466..2038468,2038472..2038474, 2038589..2038591,2038649..2038651,2038712..2038714, 2038757..2038759) /gene="lyc" /locus_tag="AGROH133_07481" /note="active site" /db_xref="CDD:119375" gene 2038942..2040168 /gene="mltB" /locus_tag="AGROH133_07483" /db_xref="GeneID:10267827" CDS 2038942..2040168 /gene="mltB" /locus_tag="AGROH133_07483" /EC_number="3.2.1.-" /note="Membrane-bound lytic murein transglycosylase B" /codon_start=1 /transl_table=11 /product="lytic murein transglycosylase" /protein_id="YP_004279350.1" /db_xref="GI:325293486" /db_xref="GeneID:10267827" /translation="MPTFRSRSIIFAAALSLLSTGSALATPPVASPDDPKQVACGGDL GAFLEGVKAEAAAKGVPAAAIEKALAGAQIDPKVLSRDRAQGVFRQTFLEFSQRTVSQ ARLDIGRKKLQELSSTFARAENEFGIPAGVIAAFWAMETDFGAVQGDFNTRNALVTLS HDCRRPELFRPQLLALIEMVQHGDLDPTSNTGAWAGEIGQVQMLPKDIIAFGIDGDGD GHVNVKSSAPDAILTAAKFIQHLGFKKGEPWMQEVSVPENLPWEKSGLGGSLTAGDWF TLDVTPRDGNKNFASLPAALIMPQGRKGPTFLTYPNFNIYLEWNQSFIYTTSAAYFAN RLMGAPVYNKGNPDPGFDDATMKELQTKLEARGHDVGKVDGILGSGTRVAIQKEQQRL GIPADGWPTQALLQAL" misc_feature 2039020..2039961 /gene="mltB" /locus_tag="AGROH133_07483" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" misc_feature 2039146..2039955 /gene="mltB" /locus_tag="AGROH133_07483" /note="lytic murein transglycosylase; Region: MltB_2; TIGR02283" /db_xref="CDD:162796" misc_feature 2040010..2040165 /gene="mltB" /locus_tag="AGROH133_07483" /note="Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471" /db_xref="CDD:190001" gene complement(2040634..2041539) /gene="metF" /locus_tag="AGROH133_07485" /db_xref="GeneID:10267828" CDS complement(2040634..2041539) /gene="metF" /locus_tag="AGROH133_07485" /EC_number="1.5.1.20" /codon_start=1 /transl_table=11 /product="5,10-methylenetetrahydrofolate reductase" /protein_id="YP_004279351.1" /db_xref="GI:325293487" /db_xref="GeneID:10267828" /translation="MLRSETARHNGEIRGDIRLSFEFFPPKNPEMENQLWETVAELKK WDPDFVSVTYGAGGSTKAPTLDAVRRMIGDSHLPTAAHLTCVDASRDDVHQVVEEFRN AGVRHFVALRGDPSTGIGTDYRPHPQGYENAAALVKGLRDISDFEVSVSAYPEKHPES ASDAVDIDMLKRKADNGATRALTQFFFDNDVFERYMERVTAAGITIPVVPGIMPIQNL TQLKRFAGRCGTSVPSFLDERFAGYDDDLEGRARVAAEVAAEQIADLQRRGVNEFHLY TMNRAPLVDAVLENLGLERLRRSAA" misc_feature complement(2040664..2041497) /gene="metF" /locus_tag="AGROH133_07485" /note="Methylenetetrahydrofolate reductase; Region: MTHFR; pfam02219" /db_xref="CDD:145399" misc_feature complement(2040667..2041485) /gene="metF" /locus_tag="AGROH133_07485" /note="Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine...; Region: MTHFR; cd00537" /db_xref="CDD:29637" misc_feature complement(order(2040712..2040714,2040988..2040990, 2040994..2040996,2041021..2041026,2041033..2041035, 2041042..2041044,2041063..2041065,2041069..2041071, 2041081..2041083,2041087..2041089,2041141..2041146, 2041201..2041209,2041294..2041296,2041378..2041380)) /gene="metF" /locus_tag="AGROH133_07485" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:29637" gene complement(2041541..2042584) /locus_tag="AGROH133_07486" /db_xref="GeneID:10267829" CDS complement(2041541..2042584) /locus_tag="AGROH133_07486" /EC_number="2.1.1.-" /note="methyltransferase type 11; methylase involved in ubiquinone/menaquinone biosynthesis" /codon_start=1 /transl_table=11 /product="methyltransferase transcriptional regulator protein, ArsR family" /protein_id="YP_004279352.1" /db_xref="GI:325293488" /db_xref="GeneID:10267829" /translation="MLIRLQGAADVAFGLDKLVDLLKAAGEPTRFRLLALLAAGDLTV TDLTEILGQSQPRISRHLKLLTEEGLIERYQEGAWAYFRLRQDGEPAVVIRQLLGAAS PSDAVLQRDSERLATVKRVRAERAQDYFSRNASAWDELRRLHVSDEAVEGALLKLVGT TPIDSLLDLGTGTGRILQLLSGIYRRAIGVDASRDMLSVARSNLDKAGVVNASVRHGD ILNLPLEGQDFDLIVIHQVLHFLDQPEIALSEAARMLRPGGRLIVIDLAPHSFEHLRD EHAHVRLGFSHPLMDEWLKKAGLVLDRAVDLHSERASDESLDVTIWVARDQRLLMADD VVQEAVLLAAGRA" misc_feature complement(2042291..2042521) /locus_tag="AGROH133_07486" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature complement(order(2042291..2042299,2042303..2042311, 2042315..2042320,2042378..2042380,2042468..2042470, 2042477..2042482,2042489..2042494,2042501..2042503, 2042510..2042512,2042516..2042521)) /locus_tag="AGROH133_07486" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(2042339..2042347,2042360..2042368, 2042384..2042389,2042393..2042398,2042405..2042410, 2042414..2042425,2042450..2042458,2042495..2042503, 2042513..2042518)) /locus_tag="AGROH133_07486" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(2042318..2042320,2042447..2042449, 2042456..2042458)) /locus_tag="AGROH133_07486" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" misc_feature complement(2041604..2042215) /locus_tag="AGROH133_07486" /note="SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: SmtA; COG0500" /db_xref="CDD:30846" misc_feature complement(2041787..2042089) /locus_tag="AGROH133_07486" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature complement(order(2041880..2041882,2041928..2041936, 2042009..2042014,2042060..2042080)) /locus_tag="AGROH133_07486" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(2042718..2044367) /gene="chvD" /locus_tag="AGROH133_07488" /db_xref="GeneID:10267830" CDS complement(2042718..2044367) /gene="chvD" /locus_tag="AGROH133_07488" /note="ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ATPase components of ABC transporters with duplicated ATPase domains" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="YP_004279353.1" /db_xref="GI:325293489" /db_xref="GeneID:10267830" /translation="MARQFIYHMAGLNKSYGAKKVLENVHLSFYPDAKIGILGPNGAG KSTVLKIMAGLDKEYTGEAWLAEGATLGYLEQEPKLDENKTVMENVMEGVASKTAIVD RYNELMMNYSDETADEGAKLQDIIDSQNLWDLENQVEMAMDALRCPPGDSAVTGLSGG ERRRVALCKLLLSQPDLLLLDEPTNHLDAETIAWLEKHLRDYPGAVMMITHDRYFLDN VTGWILELDRGRGIPYEGNYSAYLQAKAKRMQQESREDASRQKAISREQEWIASSPKA RQTKSKARIRAYDELVEAAENRRPGDAQIVIPVAERLGRVVIEAENLTKSYGDRVLIE NLTFKLPPGGIVGVIGPNGAGKTTLFRMITGQEKPDSGSVTIGETVHLGYVDQSRDTL AGDKTVWEEISGGNDIIKLGKFETNSRAYCGAFNFKGGDQQQKVGNLSGGQRNRVHLA KMLKAGGNVLLLDEPTNDLDTETLAALEEALEAFAGCAVIISHDRMFLDRLATHILAF EGDSHVEWFEGNFEDYEKDKVRRLGPESIKPGRVSYKRLTR" misc_feature complement(2042721..2044367) /gene="chvD" /locus_tag="AGROH133_07488" /note="putative ABC transporter ATP-binding protein; Reviewed; Region: PRK11819" /db_xref="CDD:183324" misc_feature complement(2043678..2044319) /gene="chvD" /locus_tag="AGROH133_07488" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2044230..2044253) /gene="chvD" /locus_tag="AGROH133_07488" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(2043735..2043737,2043822..2043827, 2044140..2044142,2044227..2044235,2044239..2044244)) /gene="chvD" /locus_tag="AGROH133_07488" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(2044140..2044151) /gene="chvD" /locus_tag="AGROH133_07488" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(2043870..2043899) /gene="chvD" /locus_tag="AGROH133_07488" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(2043822..2043839) /gene="chvD" /locus_tag="AGROH133_07488" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(2043804..2043815) /gene="chvD" /locus_tag="AGROH133_07488" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(2043729..2043749) /gene="chvD" /locus_tag="AGROH133_07488" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature complement(2043468..2043698) /gene="chvD" /locus_tag="AGROH133_07488" /note="ABC transporter; Region: ABC_tran_2; pfam12848" /db_xref="CDD:193322" misc_feature complement(2042835..2043416) /gene="chvD" /locus_tag="AGROH133_07488" /note="ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by...; Region: ABCF_EF-3; cd03221" /db_xref="CDD:72980" gene 2044495..2045466 /locus_tag="AGROH133_07489" /db_xref="GeneID:10267831" CDS 2044495..2045466 /locus_tag="AGROH133_07489" /EC_number="3.1.1.5" /note="Alpha/beta hydrolase fold-1; Lysophospholipase" /codon_start=1 /transl_table=11 /product="lysophospholipase protein" /protein_id="YP_004279354.1" /db_xref="GI:325293490" /db_xref="GeneID:10267831" /translation="MAGTGESMNETTDDLTFSRIERLDAPSGASIAFRHQPSALSPAR GVLMICHGLVEHAGRYRRFADVMAKQGFEVYAHDHRGHGRTKAADAPIGRFAWKDGAE KVVADVMAMRRMVGERHPGLPVILFGHSMGGLVALNTAVSHPDAFDGLSIWNSNLNPG VMGRLAQIVLRLEKMLKGSDVPSAILPKATFRAWNARMPEKRTHADWLSHDRVAVDAY VEDPLCQFEASVSLWQDVFELSYRAPRLIERLPKTLPILLVSGDQDAATNDGKEIVWL AERFREAGFGHVEHTIYRGMRHETLNEIGWHAVAADFAAWCGRVVGN" misc_feature 2044525..2045445 /locus_tag="AGROH133_07489" /note="Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267" /db_xref="CDD:32448" misc_feature 2044576..>2044749 /locus_tag="AGROH133_07489" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene 2045567..2046769 /gene="caiB" /locus_tag="AGROH133_07490" /db_xref="GeneID:10267832" CDS 2045567..2046769 /gene="caiB" /locus_tag="AGROH133_07490" /EC_number="4.2.1.89" /note="CoA-transferase family III; Predicted acyl-CoA transferases/carnitine dehydratase" /codon_start=1 /transl_table=11 /product="L-carnitine dehydratase" /protein_id="YP_004279355.1" /db_xref="GI:325293491" /db_xref="GeneID:10267832" /translation="MTETPNRKPPLSGIRVIELARVLAGPWAGQMLADMGADVIKVEN SEGGDDTRAWGPPFVESADGENLSAAYYHATNRGKRSIVADLKTAEGCALVRRLVRTA DVVIENFKRGGLAKYGLDYESLRVLNPKLIYCSITGFGQTGPYADFAGYDYIVQGMSG FMSITGEPDGQPMKAGVAVADIFTGIYSVSAIQAALIHAMRSGEGQHIDMALLDVQSA VLANQNMNYLISGNAPVRLGNAHPNISPYEVMPTEDGFLILAVGNDGQFRRLCKILGI EATADDERFATNKARVAHKAEVRRIVSTETLKWQKRDLLTACEQNAVPAGPINSIEEM FADPQVQARGLRVDLEAQDGTVIPGVRTPIIMSQTPLRYERPSPKLGEHQAQVLAELE NIERTTTP" misc_feature 2045579..2046754 /gene="caiB" /locus_tag="AGROH133_07490" /note="CoA-transferase family III; Region: CoA_transf_3; cl00778" /db_xref="CDD:193935" gene 2046766..2048433 /gene="ilvG" /locus_tag="AGROH133_07491" /db_xref="GeneID:10267833" CDS 2046766..2048433 /gene="ilvG" /locus_tag="AGROH133_07491" /EC_number="2.2.1.6" /note="catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]" /codon_start=1 /transl_table=11 /product="acetolactate synthase large subunit" /protein_id="YP_004279356.1" /db_xref="GI:325293492" /db_xref="GeneID:10267833" /translation="MKATGMKRTGGQLIVEALKANGVSRVSCVPGESYLAVLDALYES GIETVVCRQEGGAAMMADTWGRLTGEPGICMVTRGPGATNASAGLHIARQDSIPMILF IGQVQREAREREAFQEVEYRRAFTEFAKWVGEIDDARRIPEFVTRAFAVATSGRPGPV VLTLPEDMLVEEVEAPEAKPYTPVEAHPGPSQIAAFSKMLGEAKRPIFIIGGTRWSEE SVASFTAFAERNKLPVGCSFRRQMLFDHLSPSYAGDVGIGINPALAKEIKEADLVVLL GGRLSEMPSSGYTLIDIPYPSQKLVHIYPEAEELGRVYRPDLAICASPDDFVAALSSV TLPDNAAWADRTATMHSAYLTWSTPPQTGPGAVQMGPIMDWIEANVPDDAIFTNGAGN YATWVHRFHRFRRFNTQSAPTSGSMGYGLPAAVAAKHLFPKREVICFAGDGCFMMHGQ EFITAVRYGLPIITVLVNNGTYGTIRMHQEREYPGRVSGTDLVNPDFAAFAKAYGGHG ETVEKTQDFAVAFERARASGKPAIIEVKLDAEAITPTRTLTQIRSRT" misc_feature 2046766..2048427 /gene="ilvG" /locus_tag="AGROH133_07491" /note="thiamine pyrophosphate protein; Validated; Region: PRK08199" /db_xref="CDD:181285" misc_feature 2046799..2047263 /gene="ilvG" /locus_tag="AGROH133_07491" /note="Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035" /db_xref="CDD:132918" misc_feature order(2046838..2046840,2046853..2046858,2046868..2046870, 2046880..2046882,2046904..2046924,2046931..2046933, 2046940..2046945,2046952..2046957,2046961..2046969, 2047003..2047005,2047024..2047026,2047036..2047038, 2047045..2047050) /gene="ilvG" /locus_tag="AGROH133_07491" /note="PYR/PP interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature order(2046853..2046861,2046868..2046870,2046880..2046882, 2046907..2046909,2046913..2046924,2046928..2046930, 2047003..2047005,2047012..2047017,2047021..2047026, 2047033..2047035,2047135..2047137,2047144..2047146) /gene="ilvG" /locus_tag="AGROH133_07491" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132918" misc_feature order(2046853..2046855,2046925..2046927,2047003..2047005, 2047015..2047017) /gene="ilvG" /locus_tag="AGROH133_07491" /note="TPP binding site [chemical binding]; other site" /db_xref="CDD:132918" misc_feature 2047342..2047758 /gene="ilvG" /locus_tag="AGROH133_07491" /note="Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205" /db_xref="CDD:189448" misc_feature 2047879..2048376 /gene="ilvG" /locus_tag="AGROH133_07491" /note="Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin...; Region: TPP_enzymes; cd00568" /db_xref="CDD:48162" misc_feature order(2048014..2048016,2048086..2048097,2048170..2048172, 2048176..2048178) /gene="ilvG" /locus_tag="AGROH133_07491" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:48162" gene 2048501..2049253 /locus_tag="AGROH133_07492" /db_xref="GeneID:10267834" CDS 2048501..2049253 /locus_tag="AGROH133_07492" /note="Heme iron utilization protein, pyridoxamine 5'-phosphate region; Putative heme iron utilization protein" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase" /protein_id="YP_004279357.1" /db_xref="GI:325293493" /db_xref="GeneID:10267834" /translation="MPDAAPPVITPRGARIEPSAGAPFEAVRVARDVLHTSRTAALAT LDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMEADPRISLTLAPFGKGDALTL PRLTLVGKAELIDPEEVPLARQRYIDRYPKAKLYLSLPDTRLYRLRTEGVQINGGPAR NASNITPADLRSDLSGAEQLMAAAADEAARLNAIKGEASRLAALAGAKTARWKITSID PDGIDLASANDLARLWFAERVKTLKQLEKALA" misc_feature 2048564..2049250 /locus_tag="AGROH133_07492" /note="Putative heme iron utilization protein [Inorganic ion transport and metabolism]; Region: HugZ; COG0748" /db_xref="CDD:31091" misc_feature 2048588..2048854 /locus_tag="AGROH133_07492" /note="Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381" /db_xref="CDD:193794" gene complement(2049476..2049817) /locus_tag="AGROH133_07493" /db_xref="GeneID:10267835" CDS complement(2049476..2049817) /locus_tag="AGROH133_07493" /note="Putative translation initiation inhibitor, yjgF family" /codon_start=1 /transl_table=11 /product="Endoribonuclease L-PSP" /protein_id="YP_004279358.1" /db_xref="GI:325293494" /db_xref="GeneID:10267835" /translation="MTIKRIEPGKRMSGAVIHGNTVYLAGQVGEGVSVTDQSKSALAE VDRLLAAAGSDKSKILQTIIYLSDMSTFGEMNAVWEGWIDPANPPARATSEAALATPD YKVEFIVTAAL" misc_feature complement(2049482..2049790) /locus_tag="AGROH133_07493" /note="This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_2; cd06150" /db_xref="CDD:100007" misc_feature complement(order(2049488..2049490,2049494..2049496, 2049500..2049502,2049530..2049556,2049569..2049571, 2049581..2049583,2049590..2049592,2049623..2049625, 2049629..2049631,2049635..2049640,2049644..2049646, 2049740..2049745,2049749..2049751,2049755..2049757, 2049764..2049766,2049770..2049772,2049779..2049784)) /locus_tag="AGROH133_07493" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100007" misc_feature complement(order(2049500..2049502,2049545..2049547, 2049590..2049592,2049602..2049604,2049782..2049784)) /locus_tag="AGROH133_07493" /note="putative active site [active]" /db_xref="CDD:100007" gene complement(2049867..2050205) /locus_tag="AGROH133_07494" /db_xref="GeneID:10267836" CDS complement(2049867..2050205) /locus_tag="AGROH133_07494" /note="Protein of unknown function DUF442; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279359.1" /db_xref="GI:325293495" /db_xref="GeneID:10267836" /translation="MDIRRIDDEYSVTGQISVADLDEVKALGFKSIVCHRPDGEEEGQ PLFADIAERAEQLGLTIVHVPVGRYGVDADAVTGMVDALDELQRPMLGYCRSGARSTA IYEKTHHLRG" misc_feature complement(2049870..2050205) /locus_tag="AGROH133_07494" /note="Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (; Region: PTPc; cl00053" /db_xref="CDD:193631" gene complement(2050348..2051181) /locus_tag="AGROH133_07495" /db_xref="GeneID:10267837" CDS complement(2050348..2051181) /locus_tag="AGROH133_07495" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279360.1" /db_xref="GI:325293496" /db_xref="GeneID:10267837" /translation="MRSFQAGKSPRIFLDETSVFDIGACVVDGIDIAPGRAIPDDGDP RIDHSLEGFLFTCGPDHIRHPEPIGGEGEGSRYPLHGSFSAHPANIVAFDVHESNALA RAEVPVNLADGGTALLERTWRIDGESGEVSLDDRIVNTSSRPIPVFLMYHMNVGARLF DKAVRLEGAMLDGGGHGWRFGEEPGTVFCVPAGQDEWAELALGPIAAIGGKTLKVRFG TETLPYLQMWRNQKDPANVLGIEPVSHRWVGRGELEAAGEFNMLQPGESRSYGLRFSI L" misc_feature complement(2050363..2051157) /locus_tag="AGROH133_07495" /note="Aldose 1-epimerase, similar to Escherichia coli c4013; Region: Aldose_epim_Ec_c4013; cd09023" /db_xref="CDD:185700" misc_feature complement(order(2050459..2050461,2050489..2050491, 2050600..2050602,2050720..2050722,2050726..2050728, 2050942..2050944)) /locus_tag="AGROH133_07495" /note="active site" /db_xref="CDD:185700" misc_feature complement(order(2050459..2050461,2050726..2050728)) /locus_tag="AGROH133_07495" /note="catalytic residues [active]" /db_xref="CDD:185700" gene 2051338..2052729 /locus_tag="AGROH133_07496" /db_xref="GeneID:10267838" CDS 2051338..2052729 /locus_tag="AGROH133_07496" /note="ErfK/YbiS/YcfS/YnhG; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279361.1" /db_xref="GI:325293497" /db_xref="GeneID:10267838" /translation="MKQFVNAALGLAIALAAVCAPLQAGAQQRYGYQEQPVLVTPDGR VLDFVPQRGDIVISRDNMGRTVFYDRYGNLLATEMPSGYQQRQQVQQRDTTYYPPAPG GEYREPQRDYGYQDNGSVRDYREYRGNGSGDDVYTGSVPGPGAVESAPLNQPMPEEST TAAVPQPQHLIERHTPVTTPVNRSRQEIVALQTFLDREGISPGVIDGKMGDNVNKAIA AWQDMTGEKLDPNNSEDILERLRASGGMPIVDYTITAADAAGPYVASIPDDYAEKSQL PALSFTSTSEALAERFHMDETYLKELNPGIDFSVPGTIIKVVNPGEPKKGQVARIVAH KGIKQVFAYGEDGALIAAYPATIGSTDTPSPSGTHTVERVALNPGYTYNPKINFRQGQ NDKILQIPPGPNGPVGTVWIALSKPTYGIHGTPEPSKIGKTNSHGCIRLTNWDATELA KMVRPGVVVEFAE" misc_feature 2052055..2052720 /locus_tag="AGROH133_07496" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: ErfK; COG1376" /db_xref="CDD:31566" misc_feature 2052325..2052714 /locus_tag="AGROH133_07496" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene 2052732..2052827 /locus_tag="AGROH133_07498" /db_xref="GeneID:10267839" CDS 2052732..2052827 /locus_tag="AGROH133_07498" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279362.1" /db_xref="GI:325293498" /db_xref="GeneID:10267839" /translation="MTAKTNCKSPADAIPPGFFVDGCYPRFSVRK" gene complement(2052800..2054005) /locus_tag="AGROH133_07499" /db_xref="GeneID:10267840" CDS complement(2052800..2054005) /locus_tag="AGROH133_07499" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="antibiotic resistance permease protein" /protein_id="YP_004279363.1" /db_xref="GI:325293499" /db_xref="GeneID:10267840" /translation="MTTRVVEGEDVYETSISPALTFLLATACGLIAANLYYGQPLAGI IGAELGLSAGATGLIVTLTQIGYGVGLLFVVPLGDLVENRRLVVSTVSMAVLALLAAA FAPHAAPFLIAAFLVGISSVAVQVIVPYAAHMAPHAVRGRVVGNVMSGLMAGIMLARP VSSLLSEVVSWRGVFLTSAGVMAILAVVLYRLLPVRVPEARLGYGALMASMGRLAAHT PILRRRAIYHAFLFAAFSLFWTTTPLYLSGPHFNLSQGQIALFALAGAAGTVAAPIAG RMADRGWTYAATFAAMVAAALSFAVTHLAPEGSHLALGILVVAAIVLDFGVTTNLVLG QRAIFTLGAEFRSRLNGVYMATFFMGGAIGSAVGGWAYSVGEWGAASWVGFALAAAAL LYFLTEKRG" misc_feature complement(<2053454..2053888) /locus_tag="AGROH133_07499" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(2054052..2054714) /locus_tag="AGROH133_07512" /db_xref="GeneID:10267841" CDS complement(2054052..2054714) /locus_tag="AGROH133_07512" /note="Tetracycline transcriptional regulator, TetR-related, C-terminal; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_004279364.1" /db_xref="GI:325293500" /db_xref="GeneID:10267841" /translation="MLDLEMIIPYIAIMTDTSHTNSPEQRHRGRPREFDIDRALDGAI RVFSRRGYHATSVGDLTDAMELAQGSLYKAFKDKKSIFIATMERYRTLQTERFEAAVA GYDTGYERLRAGLMFYAERSHGATGSDGCLVVGAAADLAALDDDIAVVVERAVKARER IVARLVAEGQRDGSVQSKTDPDDLARAMLCMMYGMRVVGKTGRSLEEMTAVVDIALKL AE" misc_feature complement(<2054322..2054642) /locus_tag="AGROH133_07512" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(2054463..2054597) /locus_tag="AGROH133_07512" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene complement(2054759..2055475) /gene="parA" /locus_tag="AGROH133_07513" /db_xref="GeneID:10267842" CDS complement(2054759..2055475) /gene="parA" /locus_tag="AGROH133_07513" /note="Cobyrinic acid a,c-diamide synthase; ATPases involved in chromosome partitioning" /codon_start=1 /transl_table=11 /product="chromosome partitioning protein" /protein_id="YP_004279365.1" /db_xref="GI:325293501" /db_xref="GeneID:10267842" /translation="MPVITFANTKGGAGKTTAVLLLATELARSGHRVTVLDADPQLWI SRWHELSGEIENLSVISHVTMASLEGHIRENNANTDCFIIDLPGAKNPLLTMALGISD HVLIPVQGCAMDARGAAEVLDHIEFLNRKMGKAIAHSIVLTRVNAMVATRSLLLVKML LAEKNVSVLNTPIVERAAYRDIFDYGGTLLCLDKDKVSNIDKAVENAKAFASEVLGLL PKRLSRFGIQPARFFTRKAA" misc_feature complement(2054813..2055475) /gene="parA" /locus_tag="AGROH133_07513" /note="ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192" /db_xref="CDD:31385" misc_feature complement(2055047..2055469) /gene="parA" /locus_tag="AGROH133_07513" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature complement(2055428..2055448) /gene="parA" /locus_tag="AGROH133_07513" /note="P-loop; other site" /db_xref="CDD:73302" misc_feature complement(order(2055221..2055223,2055428..2055430)) /gene="parA" /locus_tag="AGROH133_07513" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene complement(2055637..2056020) /locus_tag="AGROH133_07514" /db_xref="GeneID:10267843" CDS complement(2055637..2056020) /locus_tag="AGROH133_07514" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279366.1" /db_xref="GI:325293502" /db_xref="GeneID:10267843" /translation="MAAMRFSVFSPLLAVAFLSLPLAAQAASFKELSGQGYKVGALSS TKAGIRGWNLSRGSDRYFCEMRATMAYSGKNGMVSFTSAGRMITLDRATVEKRLGSSL NLPKYEDLKAGRLRADDVGSCRKLA" gene complement(2056030..2057175) /locus_tag="AGROH133_07517" /db_xref="GeneID:10267844" CDS complement(2056030..2057175) /locus_tag="AGROH133_07517" /EC_number="1.1.1.-" /note="Iron-containing alcohol dehydrogenase; Alcohol dehydrogenase, class IV" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase, iron-containing" /protein_id="YP_004279367.1" /db_xref="GI:325293503" /db_xref="GeneID:10267844" /translation="MNIVANWSYPTAVKLGRGRIKELAEACKTLGIKKPLLVTDRGLA NMAITAHALDVLEEAGLGRAIFADVDPNPNEINMEAGVKAYRDGGHDGVVAFGGGSGL DLGKTIAFMAGQTRPVWDFEDIGDWWTRADASKIAPIVAVPTTAGTGSEVGRASVITN SQTHVKKIIFHPKLLPGVVICDPELTVGMPKVITAGTGMDAFAHCLEAYSSPFFHPMS AGVALEGLRLVKEFLPRAYKDGTDIEARTNMMAAAAMGAVAFQKGLGAIHSLSHPIGA VYNTHHGMTNAVVMPAVLRFNRPAIEDKIARAAAYLGISGGFDGFYDYVLELRKELGV PDNLTAMGIKPDRIDELAAEAIKDPSCGGNPVPMTLENTRKLFEDCF" misc_feature complement(2056033..2057166) /locus_tag="AGROH133_07517" /note="Alcohol dehydrogenase, class IV [Energy production and conversion]; Region: EutG; COG1454" /db_xref="CDD:31643" misc_feature complement(2056042..2057151) /locus_tag="AGROH133_07517" /note="Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway; Region: Fe-ADH7; cd08192" /db_xref="CDD:173951" misc_feature complement(order(2056330..2056332,2056360..2056362, 2056372..2056374,2056564..2056566,2056576..2056578, 2056597..2056599,2056621..2056623,2056675..2056680, 2056735..2056737,2056741..2056746,2056858..2056860, 2056867..2056869,2056876..2056884,2057056..2057058)) /locus_tag="AGROH133_07517" /note="putative active site [active]" /db_xref="CDD:173951" misc_feature complement(order(2056330..2056332,2056372..2056374, 2056564..2056566,2056576..2056578)) /locus_tag="AGROH133_07517" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173951" gene complement(2057172..2058560) /gene="ssdH" /locus_tag="AGROH133_07518" /db_xref="GeneID:10267845" CDS complement(2057172..2058560) /gene="ssdH" /locus_tag="AGROH133_07518" /EC_number="1.2.1.-" /note="Aldehyde dehydrogenase family; NAD-dependent aldehyde dehydrogenases" /codon_start=1 /transl_table=11 /product="succinate-semialdehyde dehydrogenase NADP+" /protein_id="YP_004279368.1" /db_xref="GI:325293504" /db_xref="GeneID:10267845" /translation="MTMIQNISPIDGSVYAEREAMSLEAARAAVSKARKAQKDWARRP LEDRVQLVLKGVARLNEMVAEVVPELAHMMGRPVRYGGEFKGFNERSNYVASIAADAL APLVIEESGNFERRIEREAHGVVFVIAPWNYPYMTAINTVAPALMAGNTVVIKHAAQT LLVGERMVRAFVEAGVPDDVFINVFLDHGTTSALISEGLFNFVNFTGSVEGGRAIERA AAGTFTGLGLELGGKDPGYVMEDADLDAAVDTLMDGATYNSGQCCCGIERIYVNENLY DAFVEKSVAWVSNYKLGNPLEQETTLGPMANKRFAKVVRAQIADAVSKGAKALVDPKL FPADDGESAYVAPQVLVNVDHSMEFMTEETFGPALGIMKVKNDDEAIALMNDSKYGLT ASLWTQDAARAGRIGREIETGTVFMNRADYLDPALCWTGVKETGRGGSLSVLGFQNLT RPKSYHLKKVTK" misc_feature complement(2057199..2058554) /gene="ssdH" /locus_tag="AGROH133_07518" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(2057190..2058542) /gene="ssdH" /locus_tag="AGROH133_07518" /note="Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601); Region: ALDH_EDX86601; cd07102" /db_xref="CDD:143420" misc_feature complement(order(2057274..2057276,2057388..2057390, 2057466..2057468,2057472..2057474,2057772..2057774, 2057868..2057876,2057916..2057921,2057928..2057930, 2057937..2057948,2058087..2058092,2058096..2058098, 2058141..2058143,2058165..2058179)) /gene="ssdH" /locus_tag="AGROH133_07518" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143420" misc_feature complement(order(2057772..2057774,2057781..2057783, 2057874..2057876,2058165..2058167)) /gene="ssdH" /locus_tag="AGROH133_07518" /note="catalytic residues [active]" /db_xref="CDD:143420" gene complement(2058579..2059943) /gene="glnA4" /locus_tag="AGROH133_07519" /db_xref="GeneID:10267846" CDS complement(2058579..2059943) /gene="glnA4" /locus_tag="AGROH133_07519" /EC_number="6.3.1.2" /note="Glutamine synthetase/guanido kinase, catalytic region" /codon_start=1 /transl_table=11 /product="Glutamine synthetase" /protein_id="YP_004279369.1" /db_xref="GI:325293505" /db_xref="GeneID:10267846" /translation="MTSYTFDALKMDVAEGRIDTVLACLVDMQGRLMGKRFQAEFFVE SAFEETHSCNYVLATDMEMETVPGYKSSSWEKGYGDYTLKPDLSTLRKVPWLEGTALV LCDVLDHHTHEEVPHSPRALLKKQVARLEAMGLKAYMATELEFFLFDQTFDAARASGY RDLNLASGYNEDYHIFQTTKEEDVMRALRKGLQGAGIPVENSKGEASPGQAEINVRYA EALTMADRHAIIKNATKEIAWSKGKAVTFLAKWNYNAAGSSSHIHQSLWSLDGKPAFL DKDGEHGMSDVMRHYVAGLLAHASDITYFLAPYINSYKRFMAGTFAPTKAIWSLDNRT AGYRLCGAETKGIRIECRVGGSDLNPYLAMAALLAAGIDGIENKLELEPAFVGDAYGG KDVREIPKTLRDATAFLDGSKMLREAFGDDVVDHYVHAARWEQEEYDRRVTDWEVARG FERA" misc_feature complement(2058585..2059934) /gene="glnA4" /locus_tag="AGROH133_07519" /note="Glutamine synthetase [Amino acid transport and metabolism]; Region: GlnA; COG0174" /db_xref="CDD:30523" misc_feature complement(2059620..2059868) /gene="glnA4" /locus_tag="AGROH133_07519" /note="Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951" /db_xref="CDD:146534" misc_feature complement(2058831..2059598) /gene="glnA4" /locus_tag="AGROH133_07519" /note="Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120" /db_xref="CDD:189401" gene complement(2060009..2061523) /locus_tag="AGROH133_07520" /db_xref="GeneID:10267847" CDS complement(2060009..2061523) /locus_tag="AGROH133_07520" /note="Amino acid/polyamine transporter I; Amino acid transporters" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter transmembrane protein" /protein_id="YP_004279370.1" /db_xref="GI:325293506" /db_xref="GeneID:10267847" /translation="MDGSSSGVSYKKADASYFEKRGLSRYAGVWSLWSLGVGAVISGH FSGWNFGFSTGGWGGMLVAGIIIAIMYLGLTFSIAEMSPALPHTGAAYSFARTAMGPW GGFVTGLCENVEYVLTPAVVVTFITAYVNSILGLDPAYSPFVWIAFYAIFLALNVFGL ELSFKVTLVITLISLGVLVFFWVSAIPNMDFSRYALNIGVGPDGKAVELPEGNGSFFP FGFSGVLATLPFAVWLFLAIEQLPLAAEESVDPKRDMPKGIILGVITLMVSAFMIVLL NPSLPGVGAFHLSSSLEPLLDGFKAIYGDGGVVLLGLVALTGLIASFHTILYAQGRQI YSLSRAGYFPTVLSITHSKYRTPYVANIAGALVGLAVMLVIWFSLGAEQGGSIIGSVL LNMAVFGAMFSYILQAISFILLRKNLPHIERPFRSPFGIPGAALTIIIAIVTLLYQIQ DPNFTKGVLWVAVWFAVAIAYFAFVGRHRLILSPEEEFALEHKQAAMAAAAAKA" misc_feature complement(2060063..2061466) /locus_tag="AGROH133_07520" /note="ethanolamine permease; Region: 2A0305; TIGR00908" /db_xref="CDD:129986" misc_feature complement(2060240..2061457) /locus_tag="AGROH133_07520" /note="Transmembrane amino acid transporter protein; Region: Aa_trans; cl00524" /db_xref="CDD:193853" gene complement(2061736..2062509) /locus_tag="AGROH133_07532" /db_xref="GeneID:10267848" CDS complement(2061736..2062509) /locus_tag="AGROH133_07532" /EC_number="3.5.1.68" /note="Uncharacterized conserved protein UCP029730; Predicted N-formylglutamate amidohydrolase" /codon_start=1 /transl_table=11 /product="N-formylglutamate amidohydrolase" /protein_id="YP_004279371.1" /db_xref="GI:325293507" /db_xref="GeneID:10267848" /translation="MTVRSRFFTEAEGQAVGVENAAAKGDVVLVCEHASATIPEKLGT LGLSPDVLSSHAAWDPGALAVARLLSQKLDATLVHQRFSRLVYDCNRPPESPSAMPVK SEIYNIPGNLDLSEAERFARTSALYVPFHDRVSEIIAERQDRGRKVVVVTIHSFTPVY HGQFREVQIGILHDTDSRLADAMLVGAEGSALTVKRNDPYGPEDGVTHTLRLHALPDG LLNVMIEIRNDLIANEGDQSAIADFLHELMGKALSSIDE" misc_feature complement(2061739..2062500) /locus_tag="AGROH133_07532" /note="N-formylglutamate amidohydrolase; Region: FGase; cl01522" /db_xref="CDD:194156" gene 2062687..2063565 /locus_tag="AGROH133_07533" /db_xref="GeneID:10267849" CDS 2062687..2063565 /locus_tag="AGROH133_07533" /note="Sugar isomerase (SIS); Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, RpiR family" /protein_id="YP_004279372.1" /db_xref="GI:325293508" /db_xref="GeneID:10267849" /translation="MRSTTATVSDVIHAHYDALTRSEKRLAESLLGNYPVSGLGSITT IAENAGVSTPTVARMVQKLGYKGYPEFQAHLHQELEATISGPVAKHDRWATNAPGLHI LNRFADAITGNLRDTLSDLDTAVFDNAARLLSDRKRSIYFVGGRITGAIAEYFFTHMQ VIRPKTTLMSSNSSAWPQYMLNMSAGDVLVIFDIRRYEHDMTTLAEVAKANGVQIILF TDQWTSPVARHALHTFRVKIEAPSAWDSSVVTLFVVEALIEAVQSSTWDETKERMNAL EGLFEQTRLFRRPDRT" misc_feature 2062696..2063541 /locus_tag="AGROH133_07533" /note="Transcriptional regulators [Transcription]; Region: RpiR; COG1737" /db_xref="CDD:31923" misc_feature 2063056..2063466 /locus_tag="AGROH133_07533" /note="RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose...; Region: SIS_RpiR; cd05013" /db_xref="CDD:88408" misc_feature order(2063128..2063130,2063263..2063265) /locus_tag="AGROH133_07533" /note="putative active site [active]" /db_xref="CDD:88408" gene 2063854..2064960 /locus_tag="AGROH133_07535" /db_xref="GeneID:10267850" CDS 2063854..2064960 /locus_tag="AGROH133_07535" /note="Bacterial extracellular solute-binding protein, family 1; ABC-type Fe3+ transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="iron III-binding periplasmic protein precursor" /protein_id="YP_004279373.1" /db_xref="GI:325293509" /db_xref="GeneID:10267850" /translation="MISHCRRLLAATTALVMASTAIAAAAPSAELIAAAKKEGMLTTV ALPHDWCGYGDVIAAFKAKYPEITVNELNPDAGSADEVEAVKANKDNKGPQAPDVVDV GLAFGPQMKAEGLLQPYKVSTWDEIPDNVKDPEGYWYGDYYGVMSFFVNKDLVKNVPK DWADLQKPEYSGQVALAGDPRASNQAILGVLAAGLASGAKSGKEAGEAGLKYFAELNK AGNFLPVIGKAGTLAQGATPIIVAWDYNALSWKKTLNDNPPTEVVVPEKGVLAGVYVQ GISAYAPHPNAAKLWMEHLYSDDGQLGWLKGYCHPIRFNAMVKAGKVPQELIDSLPPA AAYEKAIFPTLEDVDANKAAVTGGWDSVVGANVK" misc_feature 2064019..2064951 /locus_tag="AGROH133_07535" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2065163..2066047 /locus_tag="AGROH133_07537" /db_xref="GeneID:10267851" CDS 2065163..2066047 /locus_tag="AGROH133_07537" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type uncharacterized transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004279374.1" /db_xref="GI:325293510" /db_xref="GeneID:10267851" /translation="MPSTNTGGPSDAGRKLPLHWLGVVPFAVFVLLFLIFPTMKIVVG AFQRPDGSLTLENVAGLFTSSILAAYWISIKISLASAALGCLIGFAVAAAVVLGGLPQ RIRGPLLTFSGVASQFAGVPLAFAFIATLGPVGLLTVFLKTQIGIDLRLLGFNILSFW GLTVTYLFFQIPLMILIITPALDGLKREWREAAEILGATGVQYWRMVAFPILLPSLLG TMSLLFANAFGAVATAIALTGSSLNIVPILLFAQIRGDVLGNPHLGYALAFGMIVVTG IANALYIWLRARSERWLK" misc_feature 2065199..2066044 /locus_tag="AGROH133_07537" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 2066044..2066826 /locus_tag="AGROH133_07546" /db_xref="GeneID:10267852" CDS 2066044..2066826 /locus_tag="AGROH133_07546" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type spermidine/putrescine transport system, permease component II" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004279375.1" /db_xref="GI:325293511" /db_xref="GeneID:10267852" /translation="MKKFFAWGALIFGLLYFALPLIGMTNFSLKMRRGEYSFDAYGKV LTDPRFQETFSYSVVMALFTIVFGVLLVVPTAYWVRLKLPGLRPYIEFITLLPLVIPA IVIVFGYIRLYNTSSWLPLTGTTFGTNLLLMFGYATLALPYMYRAVDTGLRTIDVSTL TEAAQSLGAGWTTILSRIILPNVLVAVLSGAFLTFAIVIGEFTMAALLNRPAFGPYMQ LLGANRAYEPAALAVISFGITWGCLGLIQLVSRYQKGAPPKA" misc_feature 2066053..2066823 /locus_tag="AGROH133_07546" /note="ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177" /db_xref="CDD:31370" misc_feature 2066203..2066760 /locus_tag="AGROH133_07546" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(2066251..2066256,2066263..2066268,2066281..2066283, 2066311..2066322,2066326..2066355,2066362..2066367, 2066371..2066373,2066455..2066460,2066464..2066466, 2066470..2066472,2066479..2066484,2066488..2066490, 2066500..2066505,2066512..2066514,2066566..2066568, 2066608..2066613,2066620..2066622,2066641..2066652, 2066659..2066664,2066698..2066703,2066731..2066736, 2066743..2066748,2066752..2066757) /locus_tag="AGROH133_07546" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(2066329..2066373,2066641..2066658) /locus_tag="AGROH133_07546" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(2066371..2066373,2066431..2066433,2066659..2066661, 2066692..2066694,2066701..2066703,2066731..2066733) /locus_tag="AGROH133_07546" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(2066515..2066517,2066521..2066556,2066572..2066577, 2066587..2066589) /locus_tag="AGROH133_07546" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 2066840..2067898 /locus_tag="AGROH133_07553" /db_xref="GeneID:10267853" CDS 2066840..2067898 /locus_tag="AGROH133_07553" /EC_number="3.6.3.31" /note="ABC transporter related; ABC-type spermidine/putrescine transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter ATP-binding protein" /protein_id="YP_004279376.1" /db_xref="GI:325293512" /db_xref="GeneID:10267853" /translation="MSFLTLSNIKKSFGSVQVVHDFNMAIEKGEFVSFLGPSGCGKTT VLRMIAGFEIPTGGSIVINGKDQTTLRPNQRNIGMVFQAYALFPNMNVYENVAFGLKV AGKPKAEIDARVKEMLQLIHLEHLADRYPYQMSGGQQQRVALARALAPKPEVLLLDEP LSALDAKIRVSLREEIRQIQRKLGITTIFVTHDQEEALSISDRIVVMNSGRADQIGSP FDIYNKPATRFVASFVGTLNLIDATVVDSSTSTIRVGEQNVTLHKPVDVANGEKITLA LRPEAGALGADAKGDVAISGIVTSSQFLGSVIRTRLDLGGSTLSFDMFNDPGTAPPAL GEQVTLKFAAGDLMVIKD" misc_feature 2066840..2067895 /locus_tag="AGROH133_07553" /note="ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842" /db_xref="CDD:33633" misc_feature 2066849..2067544 /locus_tag="AGROH133_07553" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 2066945..2066968 /locus_tag="AGROH133_07553" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(2066954..2066959,2066963..2066971,2067083..2067085, 2067311..2067316,2067413..2067415) /locus_tag="AGROH133_07553" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature 2067074..2067085 /locus_tag="AGROH133_07553" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature 2067239..2067268 /locus_tag="AGROH133_07553" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 2067299..2067316 /locus_tag="AGROH133_07553" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 2067323..2067334 /locus_tag="AGROH133_07553" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 2067401..2067421 /locus_tag="AGROH133_07553" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature 2067662..2067889 /locus_tag="AGROH133_07553" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene 2067974..2069017 /gene="adh" /locus_tag="AGROH133_07554" /db_xref="GeneID:10267854" CDS 2067974..2069017 /gene="adh" /locus_tag="AGROH133_07554" /EC_number="1.1.1.1" /note="Alcohol dehydrogenase superfamily, zinc-containing; Zn-dependent alcohol dehydrogenases" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase" /protein_id="YP_004279377.1" /db_xref="GI:325293513" /db_xref="GeneID:10267854" /translation="MRALFYELFGETPIVASLPDPEPTDGGVVIEVKATGLCRSDWHG WMGHDTDIRLPHVPGHEFAGVIAAVGKNVTRFKTGDRVTVPFVSGCGRCHECRSGNQQ VCETQFQPGFTHWGSFAEYVAIDYADQNLVHLPDTMSYATAAGLGCRFATSFRAVTDQ GRLKGGEWLAVHGCGGVGLSAIMIGAGLGAQVVAIDIAEDKLELARQLGATATINSRS VADVTEAVREVTGGGAHVSIDALGHPQTCCNSINNLRRRGRHVQVGLMLADHAMPAIP MARVIAHELEIYGSHGMQAWRYEDMLAMIESGKLAPEKLIGRHITLSDAITALPAMDR FQESGISIIDRFE" misc_feature 2067974..2069014 /gene="adh" /locus_tag="AGROH133_07554" /note="Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064" /db_xref="CDD:31264" misc_feature 2067974..2069008 /gene="adh" /locus_tag="AGROH133_07554" /note="Alcohol dehydrogenases of the MDR family; Region: Zn_ADH6; cd08260" /db_xref="CDD:176221" misc_feature order(2068085..2068093,2068100..2068102,2068415..2068417, 2068427..2068429,2068490..2068507,2068559..2068564, 2068574..2068576,2068619..2068621,2068691..2068696, 2068700..2068702,2068760..2068765,2068841..2068849) /gene="adh" /locus_tag="AGROH133_07554" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176221" misc_feature order(2068085..2068087,2068151..2068153,2068415..2068417) /gene="adh" /locus_tag="AGROH133_07554" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176221" misc_feature order(2068241..2068243,2068250..2068252,2068259..2068261, 2068283..2068285) /gene="adh" /locus_tag="AGROH133_07554" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176221" gene complement(2069065..2069709) /locus_tag="AGROH133_07555" /db_xref="GeneID:10267855" CDS complement(2069065..2069709) /locus_tag="AGROH133_07555" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279378.1" /db_xref="GI:325293514" /db_xref="GeneID:10267855" /translation="MNQIALVYVAMIFLFASAVDADAKRFRFFAAPGFSRGETIDRVY DLPNQTTFVVEGKFFDLGYLNSSTGDAYVLYNGDQYVKLDEVGLKGISSMLGFDPTVE DRKKRAAASEAAEPIGRLIGGFVLLVGLFVLLRRGIRWYYRSGSRNARLEREDIEAVV ELPEPRPPIIRQQRAPVTQDYTPVLNEVAPPTRRPEAASNRAGMAVRPFGRRNA" gene 2069910..2070686 /locus_tag="AGROH133_07558" /db_xref="GeneID:10267856" CDS 2069910..2070686 /locus_tag="AGROH133_07558" /note="AAA+ ATPase, core; Predicted ATPase" /codon_start=1 /transl_table=11 /product="ATPase AAA" /protein_id="YP_004279379.1" /db_xref="GI:325293515" /db_xref="GeneID:10267856" /translation="MLFLDSVTMKETPDRRDEYPFTVPALRQLERLEFKTPITFFAGN NGSGKSTLLEGLAAGMTAYAIGNHGQVAGDLYLQHAETVAKAFYFARKKYPKIRMFMR AEDVLGYIRKQNEEILDDFRWEREKALKRGEDFPEETPDTFRHIVRSNVIDRRSHGEG FLDIMQQRLHGAGLYFLDEPESPLSPQKQLELAAIVRHTADSGGQLIIATHSPVLLAI PEATIYYFDESGITERLYDELENISFLRRFLDRPSKFMSD" misc_feature 2069910..2070683 /locus_tag="AGROH133_07558" /note="Predicted ATPase [General function prediction only]; Region: COG3910" /db_xref="CDD:33697" misc_feature 2069979..2070560 /locus_tag="AGROH133_07558" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature 2070036..2070059 /locus_tag="AGROH133_07558" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature order(2070045..2070050,2070054..2070062,2070441..2070446, 2070540..2070542) /locus_tag="AGROH133_07558" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature order(2070336..2070338,2070375..2070386,2070405..2070419) /locus_tag="AGROH133_07558" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature 2070429..2070446 /locus_tag="AGROH133_07558" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature 2070453..2070464 /locus_tag="AGROH133_07558" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature 2070528..2070548 /locus_tag="AGROH133_07558" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene 2070766..2072097 /gene="tphA" /locus_tag="AGROH133_07559" /db_xref="GeneID:10267857" CDS 2070766..2072097 /gene="tphA" /locus_tag="AGROH133_07559" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="Proline/betaine transporter" /protein_id="YP_004279380.1" /db_xref="GI:325293516" /db_xref="GeneID:10267857" /translation="MSPTTTPAAARPLNRQDYRTLGLSALGGALEFYDFIIFVFFATV IGHLFFPPEMPDWLVMIQTFGIFAAGYLVRPLGGIVLAHYGDRYGRKRVFAFSILLMA LSTLGMALMPTYATIGVAAPILLIVLRMLQGAAIGGEVPGAWTFVAEHVPFRRVGLAC GFLTSGLSFGIMLGSLIAFAINSLFSAADVAAYAWRIPFLLGGIFGLIAVYLRRWLEE TPIFMEMKKSKSLTDKLPLGLVLKHHMRGVIISALLTWVLSAAIVVTTLMTATFLQKL YGYTPTQALAGTSFGTLFLIFGVIIAGALIDRVGSGIFFMAASIFFGIATFTFYSYAG TSLETMFVLYGVMGLSVGMAGAVPYVMVRAFPASVRFSGLSFAYNVSYAIFGGLTPIG VTMALAVNPMAHAWYLVFIAALAFCIGVYLYLRGSEIESHVGIEELAALRS" misc_feature 2070844..2072019 /gene="tphA" /locus_tag="AGROH133_07559" /note="metabolite-proton symporter; Region: 2A0106; TIGR00883" /db_xref="CDD:188094" misc_feature 2070961..2072034 /gene="tphA" /locus_tag="AGROH133_07559" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(2070964..2070966,2070973..2070978,2070985..2070987, 2070997..2071002,2071006..2071011,2071171..2071176, 2071183..2071188,2071195..2071200,2071207..2071209, 2071243..2071248,2071255..2071260,2071276..2071278, 2071540..2071542,2071549..2071554,2071561..2071566, 2071573..2071575,2071615..2071617,2071627..2071629, 2071639..2071641,2071648..2071650,2071660..2071662, 2071807..2071809,2071816..2071821,2071828..2071830, 2071840..2071845,2071852..2071854,2071885..2071890, 2071897..2071902,2071909..2071914,2071921..2071923) /gene="tphA" /locus_tag="AGROH133_07559" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene complement(2072167..2075955) /gene="meth" /locus_tag="AGROH133_07572" /db_xref="GeneID:10267858" CDS complement(2072167..2075955) /gene="meth" /locus_tag="AGROH133_07572" /EC_number="2.1.1.13" /note="one of two methionine synthases in Escherichia coli; meth catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; methionine synthase I, cobalamin-binding domain" /codon_start=1 /transl_table=11 /product="B12-dependent methionine synthase" /protein_id="YP_004279381.1" /db_xref="GI:325293517" /db_xref="GeneID:10267858" /translation="MRSAPVFDDLFGPEGAKRDGAEILRALRQAASERILILDGAMGT QIQGLGFDEDNFRGDRFIGCACHQQGNNDLLILTQPDAIEEIHYRYAMAGADILETNT FSSTRIAQADYEMENAVYDLNREGAQIVRRAAQRAEREDGRRRFVAGAIGPTNRTASI SPDVNNPGYRAVSFDDLRIAYGEQIDGLIDGGADIILIETIFDTLNAKAAIFACEERF EAKGIRLPVMISGTITDLSGRTLSGQTPSAFWNSVRHANPFTIGLNCALGADAMRPHL QELSDVADTFVCAYPNAGLPNEFGQYDETPEMMARQVQGFARDGLVNIVGGCCGSTPE HIRAIAEAVKDYKPRPIPEHKPFMSLSGLEPFVLTKDIPFVNVGERTNVTGSARFRKL ITAGDYTAALAVARDQVENGAQIIDINMDEGLIDSQKAMVEFLNLIAAEPDIARVPVM IDSSKFEIIEAGLKCVQGKSIVNSISLKEGEEKFLQQARLVHNYGAAVVVMAFDEVGQ ADTYQRKVEICTRAYKLLTEKAGLSPEDIIFDPNVFAVATGIEEHNNYGVDFIEATKT IRETMPLTHISGGVSNLSFSFRGNEPVREAMHAVFLYHAIQVGMDMGIVNAGQLAVYD NIDAELREACEDVVLNRRDDATERLLDVAERFRGTGEKQAKVQDLSWRELSVEKRLQH ALVNGITEFIEADTEEARQQAARPLHVIEGPLMAGMNVVGDLFGSGKMFLPQVVKSAR VMKQAVAVLLPYMEEEKRLNGGEQNKAAGKVLMATVKGDVHDIGKNIVGVVLACNNYE IIDLGVMVPTTKILETAIAEKVDVIGLSGLITPSLDEMVHVAAEMERQGFNIPLLIGG ATTSRVHTAVKIHPRYEQGQAIYVTDASRAVGVVSALLSAEQKPAYIDGIRAEYAKVA EAHARNEREKQRLPLSRARENAHKIDWSTYSVVKPQFFGTKVFETYDLEELSRYIDWT PFFQTWELKGRYPAILEDEKQGEAARQLYADAQAMLKKIIEEKWFRPRAVIGFWPANA VGDDIRLFTDENRSEELATFFTLRQQLSKRDGRPNVALSDFVAPVDSGVADYVGGFVV TAGIEEVAIAERFERANDDYSSILVKALADRFAEAFAERMHERVRKEFWGYAPEEALA GDELIGEAYAGIRPAPGYPAQPDHTEKKTLFSLLDATNAAGVELTESYAMWPGSSVSG LYIGHPESYYFGVAKVERDQVLDYARRKDMPLVQVERWLGPVLNYVPVNGAEEIDSAA " misc_feature complement(2072212..2075907) /gene="meth" /locus_tag="AGROH133_07572" /note="B12-dependent methionine synthase; Provisional; Region: metH; PRK09490" /db_xref="CDD:181903" misc_feature complement(2074894..2075865) /gene="meth" /locus_tag="AGROH133_07572" /note="Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]; Region: MHT1; cl14105" /db_xref="CDD:187229" misc_feature complement(2074066..2074836) /gene="meth" /locus_tag="AGROH133_07572" /note="MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent...; Region: MeTr; cd00740" /db_xref="CDD:29546" misc_feature complement(order(2074108..2074110,2074114..2074116, 2074207..2074209,2074219..2074221,2074336..2074338, 2074453..2074455,2074531..2074533,2074537..2074539, 2074600..2074602,2074810..2074812)) /gene="meth" /locus_tag="AGROH133_07572" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29546" misc_feature complement(2073274..2073930) /gene="meth" /locus_tag="AGROH133_07572" /note="B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy); Region: methionine_synthase_B12_BD; cd02069" /db_xref="CDD:30207" misc_feature complement(order(2073298..2073300,2073307..2073309, 2073316..2073318,2073385..2073387,2073466..2073474, 2073478..2073486,2073595..2073597,2073604..2073624, 2073751..2073753,2073760..2073762,2073811..2073813, 2073823..2073825)) /gene="meth" /locus_tag="AGROH133_07572" /note="B12 binding site [chemical binding]; other site" /db_xref="CDD:30207" misc_feature complement(2073613..2073615) /gene="meth" /locus_tag="AGROH133_07572" /note="cobalt ligand [ion binding]; other site" /db_xref="CDD:30207" misc_feature complement(2072305..2072718) /gene="meth" /locus_tag="AGROH133_07572" /note="Vitamin B12 dependent methionine synthase, activation domain; Region: Met_synt_B12; pfam02965" /db_xref="CDD:111813" gene 2076132..2077379 /locus_tag="AGROH133_07573" /db_xref="GeneID:10267859" CDS 2076132..2077379 /locus_tag="AGROH133_07573" /note="Six-hairpin glycosidase-like, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); N-acyl-D-glucosamine 2-epimerase" /codon_start=1 /transl_table=11 /product="N-acylglucosamine 2-epimerase" /protein_id="YP_004279382.1" /db_xref="GI:325293518" /db_xref="GeneID:10267859" /translation="MPEDDHNNRNWNTLPWHRQWLVKQADGLFDFFQYRAVNPAGGFF DLDAKGAPLQKNDPVRGIHASARMVHCFSIGHLLGRPGCGDIVDHGMTYLWNNHRDSE HGGYFWQVNDGGPVDATKQGYGHAFVLLAASSAKTVGHPLADKMLADITEVLETRFWE EKHGAIAEEFNRDWSPIDNYRGQNSNMHLTEALMAAYEATGDSNYLTKAERIADLVIR RRAGELDFRVPEHFDENWTLDKEYRGNEMFRPSGSTPGHWLEWARLILQLWVLGERRH DWMPVAAKSLFVQSMALGWDREKGGFFYTLDWHDNPDKTAKLWWPMCEAAGAAHFLNE NLPADEFYEDSYRRIWSTIANNFIDHDNGGWHEELTENLIPANTLFPGKGDIYHALQA CLIPLFPATGSLTKVIKEGGGSY" misc_feature 2076159..2077328 /locus_tag="AGROH133_07573" /note="AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is...; Region: AGE; cd00249" /db_xref="CDD:29324" misc_feature 2076177..2077346 /locus_tag="AGROH133_07573" /note="N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]; Region: COG2942" /db_xref="CDD:32765" misc_feature order(2076186..2076188,2076207..2076209,2076357..2076359, 2076393..2076395,2077323..2077325) /locus_tag="AGROH133_07573" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29324" misc_feature order(2076318..2076320,2076330..2076332,2076339..2076341, 2076498..2076500,2076510..2076512,2076519..2076521, 2076681..2076683,2076690..2076695,2076702..2076704, 2076900..2076902,2076909..2076911,2076918..2076923, 2077086..2077091,2077101..2077103,2077278..2077280, 2077290..2077295,2077302..2077304) /locus_tag="AGROH133_07573" /note="putative active cleft [active]" /db_xref="CDD:29324" gene complement(2077479..2078039) /locus_tag="AGROH133_07574" /db_xref="GeneID:10267860" CDS complement(2077479..2078039) /locus_tag="AGROH133_07574" /EC_number="3.1.3.48" /note="Protein-tyrosine phosphatase, Tyr-specific/dual-specificity type; Protein tyrosine/serine phosphatase" /codon_start=1 /transl_table=11 /product="tyrosine/serine protein phosphatase" /protein_id="YP_004279383.1" /db_xref="GI:325293519" /db_xref="GeneID:10267860" /translation="MRIVLKFLKIAAIGLVALPVLAGAHMGIGQLTGNFHEVIPGELY RSAQPSGKDITAYAKAYGIKTIINLRDEKREGWYDAESQAAKKNGVRLVDYPLSSSEK VSVEEAETLVAVLRNAEKPILIHCEHGANRTGLASAIYVSAVAGKSEAAAEFQLSPYY GHVPIPGIGRYEMYQSWDDFEETIGF" misc_feature complement(2077488..2078027) /locus_tag="AGROH133_07574" /note="Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (; Region: PTPc; cl00053" /db_xref="CDD:193631" gene complement(2078242..2078694) /locus_tag="AGROH133_07577" /db_xref="GeneID:10267861" CDS complement(2078242..2078694) /locus_tag="AGROH133_07577" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279384.1" /db_xref="GI:325293520" /db_xref="GeneID:10267861" /translation="MIVGAVLSAILLLTLIAFPRHLKPVVICLLLIWGTTAAFVIYDW QRGSQRLDHVIATASFDAACTDAALPIRVSFRNDNNVAVQRLTYTLEGFEPAFRASVA FDPYQVSERRIEAGETFAACRSFRLRNNETVDPQRLEWRVTIVSAEFD" gene 2079080..2079712 /gene="omp" /locus_tag="AGROH133_07580" /db_xref="GeneID:10267862" CDS 2079080..2079712 /gene="omp" /locus_tag="AGROH133_07580" /note="Porin, alpha proteobacteria type; Opacity protein and related surface antigens" /codon_start=1 /transl_table=11 /product="Outer membrane protein" /protein_id="YP_004279385.1" /db_xref="GI:325293521" /db_xref="GeneID:10267862" /translation="MKTLIVTSLLALSASTAMAADAVYETPAPPVAQETLPVFTWSGP YLGIQGGAGWANGDFSAGGPVASDSFDGGILGAFAGYNYQFDNNFVLGIEGDVDYNWN DNDYAGVNIGTDWQGSVRGRVGYAFDRALIYGTAGWTATRGFIETPGAGKDSTTFNGY TVGAGLDYAFTDNVFGRIEYRYNDYGDKDIFGVNTDFDQSTVKVGLGVKF" misc_feature 2079191..2079709 /gene="omp" /locus_tag="AGROH133_07580" /note="Surface antigen; Region: Surface_Ag_2; cl01155" /db_xref="CDD:194055" gene 2079925..2080287 /locus_tag="AGROH133_07582" /db_xref="GeneID:10267863" CDS 2079925..2080287 /locus_tag="AGROH133_07582" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279386.1" /db_xref="GI:325293522" /db_xref="GeneID:10267863" /translation="MKKIILTTLAALVATGSVFASYGTAAAQDYPYRPRYDRGGPPPP PYREHRRHNDGAAIAGGLAAGVIGGLIGGAIANGGNSGPRYYEPPPPPRPRCWFEDRR VPNSYDGGWHTESMRVCD" gene complement(2080444..2080519) /locus_tag="AGROH133_07586" /db_xref="GeneID:10267864" tRNA complement(2080444..2080519) /locus_tag="AGROH133_07586" /product="tRNA-Met" /db_xref="GeneID:10267864" gene 2080698..2081441 /gene="pp26" /locus_tag="AGROH133_07587" /db_xref="GeneID:10267865" CDS 2080698..2081441 /gene="pp26" /locus_tag="AGROH133_07587" /note="Protein of unknown function DUF541; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="periplasmic immunogenic protein" /protein_id="YP_004279387.1" /db_xref="GI:325293523" /db_xref="GeneID:10267865" /translation="MTTTKARLFALSALTAAAMMPLAGNALAQDATPREATISVSGEG QSAIAPDMAILSFSVVKQAETAAAALTENSKALAEVLKSLKASAIEDRDLQTSNFSVQ PLYKHYEPKDGVYVAPEITGYQVSNGLTVRVRDLKKLGEILDTSVKLGINQGGDITFT NDKPEATVTEARKQAVADALAKAKTLTEAAGVKLGRVIQISENMQRPMPVPQTMMRAS MAKEADSVPIASGENNYSVVVNVTFALGE" misc_feature 2080698..2081435 /gene="pp26" /locus_tag="AGROH133_07587" /note="Protein of unknown function (DUF541); Region: SIMPL; cl01077" /db_xref="CDD:194028" gene complement(2081611..2081988) /locus_tag="AGROH133_07589" /db_xref="GeneID:10267866" CDS complement(2081611..2081988) /locus_tag="AGROH133_07589" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279388.1" /db_xref="GI:325293524" /db_xref="GeneID:10267866" /translation="MFSTFAKAGLAALIALGGISVTAPAASAGPDVQLRVQVQDGYGH DRGRGPGWGRPDRPGPGWGRPDRPRYGCSPRLAEEKASRMGLRRARVVDVSPRRVVVA GFDRRGPDRIFFANERGCPVIRR" gene complement(2082148..2082627) /locus_tag="AGROH133_07591" /db_xref="GeneID:10267867" CDS complement(2082148..2082627) /locus_tag="AGROH133_07591" /note="Protein of unknown function UPF0047; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279389.1" /db_xref="GI:325293525" /db_xref="GeneID:10267867" /translation="MVQRLQCLICSEFSKGNNVPQKKMTITTTHGQGLYEFTSEAERF VKEAGADEGLLTVFVRHTSCSLLIQENADPDVRRDLAVFFSRLVPPSDDVSMRWVVHT LEGPDDMPAHIKSALTAVSIGVPISDGRLTLGTWQGLYLFEHRDRPHRREIVLHISP" misc_feature complement(2082157..2082525) /locus_tag="AGROH133_07591" /note="Uncharacterised protein family UPF0047; Region: UPF0047; cl00439" /db_xref="CDD:193820" gene 2082826..2085378 /locus_tag="AGROH133_07592" /db_xref="GeneID:10267868" CDS 2082826..2085378 /locus_tag="AGROH133_07592" /EC_number="2.7.3.-" /note="Bacteriophytochrome, CheY-like; Bacteriophytochrome (light-regulated signal transduction histidine kinase)" /codon_start=1 /transl_table=11 /product="bacteriophytochrome" /protein_id="YP_004279390.1" /db_xref="GI:325293526" /db_xref="GeneID:10267868" /translation="MASTDYNVDLTNCDREPIHIPGYIQSHGCLIACDNAMRMVLRHS ENCREILRVDGDINGRTAEEVLGKNLVHDLRNALTVTGRTTRPAMLPNMELRDGRSFD IALHRYKSTTIIEFEPSGSETQPLGTARKMVDRIREADTVESLISRTTRLVKATLGYD RVMIYRFEDDGAGKVVSEAKQPELESFLGQYFPASDIPQQARTLYLKNTLRIISDASG IRVPVLPAIDVSGEPLDLSFAHLRSVSPIHCEYLRNMGVGASMSISVIVDGALWGLIA CHHYSPRVLTMSVRIAAEMFGEFFSMHLQVLKQKRKLDTVNHAHAALDRFLRLAAHHA HIEELLIDSFQDFADLMPCDGVGLWVDNNWHGHGATPPADAIPRLARFVTSVSEGRVW ATHAISQAIPEAEIYADIAAGMLAIPLSQVKNDYLLFFRREIVQNLNWAGNPEKSYET GPLGDRLTPRKSFAIWKETVRLQAQPWSDADREIAEAARIALVEVAFHHSELMAGERE RAEVRQRMLNEELNHRVKNVLAIIKSLVGNPSQEGKTLQEYIGALKGRIQALSFAHDQ IIRGEGGGSLRDLLDAELSPHRSAEAIVDLAGPQVTLDSRAFSVMALVLHELATNAAK YGALAQTGGKLDLRWEVDENRDCLIHWRETLPTKLPTPSRSGFGTALISRSIPYDLGG RSTIRYLPDGLEAEILLPSRHISAVMTASEMKTEDDTVPQPRRSNREETLKILLVEDQ MLIAMDVENMLEDNGIKTIETATSSAMAIEKLKSYVPDVAILDINLGSDTSIAVAREL HRRGIPFLFATGYADASMVPDDFGNVPVIRKPYDEDALMAGIGLLVGDTERV" misc_feature 2082826..2085027 /locus_tag="AGROH133_07592" /note="Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]; Region: COG4251" /db_xref="CDD:33974" misc_feature 2083252..2083737 /locus_tag="AGROH133_07592" /note="GAF domain; Region: GAF; cl00853" /db_xref="CDD:193954" misc_feature 2083780..2084328 /locus_tag="AGROH133_07592" /note="Phytochrome region; Region: PHY; pfam00360" /db_xref="CDD:144086" misc_feature 2084383..2084625 /locus_tag="AGROH133_07592" /note="Histidine kinase; Region: HisKA_2; cl06527" /db_xref="CDD:157259" misc_feature 2085004..2085369 /locus_tag="AGROH133_07592" /note="FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784" /db_xref="CDD:31127" misc_feature 2085028..2085345 /locus_tag="AGROH133_07592" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2085037..2085042,2085172..2085174,2085196..2085198, 2085250..2085252,2085301..2085303,2085310..2085315) /locus_tag="AGROH133_07592" /note="active site" /db_xref="CDD:29071" misc_feature 2085172..2085174 /locus_tag="AGROH133_07592" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2085181..2085186,2085190..2085198) /locus_tag="AGROH133_07592" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2085310..2085318 /locus_tag="AGROH133_07592" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(2085500..2086465) /locus_tag="AGROH133_07593" /db_xref="GeneID:10267869" CDS complement(2085500..2086465) /locus_tag="AGROH133_07593" /note="Protein of unknown function DUF930" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279391.1" /db_xref="GI:325293527" /db_xref="GeneID:10267869" /translation="MQQVSASRWRGKGWAVPVSVLLHLAVVAIFLFELPERIAEPQEP ESISVDLVPPPEEKKPEEAKPPAAEQAKQEKPQPPPPPPAPPAEEPKPSPPLQATLPA IAMRPEETQADPEDKPGKAEEADKTEPSKEPESQPEKTAEDKPAPSAANGDLKASAEQ GEIAVSPVKQEAEPEKAPVPQEKPADEKPAEVAKEKPAKLPAAKQLLSSSLLSPAQRR QMFGDLPPRRRIVNLCSTEALAQIQNAGFPARGMIPTSDTGRKISGSSIDATGGAFNV GGTWYDVSFQCDVDLDNYAVTEFRFKIGNAISPEDAKKRGFTRFQ" misc_feature complement(2085512..2085805) /locus_tag="AGROH133_07593" /note="Domain of Unknown Function (DUF930); Region: DUF930; pfam06059" /db_xref="CDD:114763" gene complement(2086616..2088670) /gene="rpoD" /locus_tag="AGROH133_07595" /db_xref="GeneID:10267870" CDS complement(2086616..2088670) /gene="rpoD" /locus_tag="AGROH133_07595" /note="sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor RpoD" /protein_id="YP_004279392.1" /db_xref="GI:325293528" /db_xref="GeneID:10267870" /translation="MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYV TMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDAEEAPGEAESDDSDNEESEG GELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRET MISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEA DRKAAEEKEKTRRLRAPSGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQV METLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKDLKDQLITAVKSLSLNQ NRVDSLVEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYHGAELDPNWMKSIANL AARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEM VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ AITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTP REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL DS" misc_feature complement(2086619..2088616) /gene="rpoD" /locus_tag="AGROH133_07595" /note="RNA polymerase sigma factor RpoD; Validated; Region: PRK05658" /db_xref="CDD:180186" misc_feature complement(<2088437..2088604) /gene="rpoD" /locus_tag="AGROH133_07595" /note="Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979" /db_xref="CDD:112778" misc_feature complement(2088194..2088295) /gene="rpoD" /locus_tag="AGROH133_07595" /note="Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140" /db_xref="CDD:189414" misc_feature complement(2087417..>2087890) /gene="rpoD" /locus_tag="AGROH133_07595" /note="Sigma-70, non-essential region; Region: Sigma70_ner; pfam04546" /db_xref="CDD:146940" misc_feature complement(2087111..2087323) /gene="rpoD" /locus_tag="AGROH133_07595" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature complement(2086853..2087086) /gene="rpoD" /locus_tag="AGROH133_07595" /note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539" /db_xref="CDD:146934" misc_feature complement(2086661..2086837) /gene="rpoD" /locus_tag="AGROH133_07595" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature complement(order(2086673..2086675,2086679..2086684, 2086688..2086696,2086700..2086705,2086709..2086711, 2086739..2086744,2086772..2086774,2086802..2086804)) /gene="rpoD" /locus_tag="AGROH133_07595" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene complement(2089065..2091050) /gene="dnaG" /locus_tag="AGROH133_07596" /db_xref="GeneID:10267871" CDS complement(2089065..2091050) /gene="dnaG" /locus_tag="AGROH133_07596" /EC_number="2.7.7.-" /note="synthesizes RNA primers at the replication forks; DNA primase (bacterial type)" /codon_start=1 /transl_table=11 /product="DNA primase" /protein_id="YP_004279393.1" /db_xref="GI:325293529" /db_xref="GeneID:10267871" /translation="MRFSNSFLDEIRDRVNISDVIGRRVSWDKKKTNTPRGDYWACCP FHGEKSPSFHCEDRKGRYHCFGCGVSGDHFRFLTDLEGLSFPEAVQQIADMAGISMPQ PDPQAEKRERERTSLQDVMEMATLFFQDQLQTALGARARAYLRDRGLTGRTIETFRLG FAPDSRNALKEHLASKGVAREQMEACGLVVHENVPVSYDRFRDRIMFPILSSREKVIA FGGRAMAADAVAKYLNSNETELFHKGNVLYNFARARRASQASGGTVIAVEGYMDVIAL YQAGVENAVAPLGTALTESQLDLLWKMSPQPILCFDGDGAGIRAANRAADLALPHIKP DRSVSFALLPDGKDPDDLVRLEGRAPFDRVLSEAKPLAAMIWSRETSSVTFDTPEKRA QLESRLRQIVAVIGDEAVRRFYQQDMRDRLNAFFQPRFQQGGSQGGNFRRDGQQGNGR GFQRNASGRGGAMAAPASNISDRLTQSGLVRGHQTKPSLRESVLAITIVNHPELLLEE YDEIAAIDYENRDLQRLWSTVLTFAAESAAEISRAGLIERLSQQGFEVLLKTMDQQVR NARLWTATEQAALEDAREGYVQALSLHKRTKSLLWQKRELEREIGEATDDERGTLLVR ALAEVQLEIGRMENQEAIIDGFGVMSGRVKGPAVGHG" misc_feature complement(2089170..2091050) /gene="dnaG" /locus_tag="AGROH133_07596" /note="DNA primase; Validated; Region: dnaG; PRK05667" /db_xref="CDD:180189" misc_feature complement(2090748..2091035) /gene="dnaG" /locus_tag="AGROH133_07596" /note="CHC2 zinc finger; Region: zf-CHC2; cl02597" /db_xref="CDD:141551" misc_feature complement(2090301..2090672) /gene="dnaG" /locus_tag="AGROH133_07596" /note="DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275" /db_xref="CDD:191985" misc_feature complement(2090022..2090267) /gene="dnaG" /locus_tag="AGROH133_07596" /note="TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364" /db_xref="CDD:173784" misc_feature complement(order(2090103..2090105,2090109..2090111, 2090115..2090117,2090235..2090237,2090244..2090249)) /gene="dnaG" /locus_tag="AGROH133_07596" /note="active site" /db_xref="CDD:173784" misc_feature complement(order(2090115..2090117,2090247..2090249)) /gene="dnaG" /locus_tag="AGROH133_07596" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173784" misc_feature complement(order(2090187..2090189,2090217..2090222, 2090238..2090243)) /gene="dnaG" /locus_tag="AGROH133_07596" /note="interdomain interaction site; other site" /db_xref="CDD:173784" misc_feature complement(2089770..2089940) /gene="dnaG" /locus_tag="AGROH133_07596" /note="DnaB-helicase binding domain of primase; Region: DnaB_bind; pfam10410" /db_xref="CDD:192576" gene complement(2091433..2091885) /locus_tag="AGROH133_07597" /db_xref="GeneID:10267872" CDS complement(2091433..2091885) /locus_tag="AGROH133_07597" /note="Yqey-like protein; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279394.1" /db_xref="GI:325293530" /db_xref="GeneID:10267872" /translation="MMRDTFANTLKDALKARDARRTSTVRLIQAAIKDRDIANRGVGK DPVTDDEIMQILTKMVKQREESASIYDGAGRAELAAQEREEIVIIKEFMPEEIPAEKV RELCQAVISETGASGLRDMGKCMNALKERYPGQIDFAKASGVVKDLLK" misc_feature complement(2091439..2091879) /locus_tag="AGROH133_07597" /note="GatB domain; Region: GatB_Yqey; cl11497" /db_xref="CDD:159498" gene 2092222..2093427 /gene="carA" /locus_tag="AGROH133_07598" /db_xref="GeneID:10267873" CDS 2092222..2093427 /gene="carA" /locus_tag="AGROH133_07598" /EC_number="6.3.5.5" /note="catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; Carbamoylphosphate synthase small subunit" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase small chain" /protein_id="YP_004279395.1" /db_xref="GI:325293531" /db_xref="GeneID:10267873" /translation="MTETAPWTTRKPTAMLVLADGTVIEGTGIGATGKVQAEVCFNTA LTGYEEILTDPSYLGQIVTFTFPHIGNVGTNEEDIEDLTPAARRGAVGVIFKADITDP SNFRAAKHLDAWLKARGVIGLCGIDTRALTAWIRENGAPNAVIAHDPNGVFDIDALKA EAKAWSGLVGLDLAIEATSGQSSTWTETPWVWNEGYGTLNEADAKYHVVCVDFGVKRN ILRLFAGLDCKVTVVPAQTSAEDILALKPDGVFLSNGPGDPAATGEYAVPVIQNLINS DLPIFGICLGHQMLGLAVGAKTEKMHQGHHGANHPVKDFTTGKVEIVSMNHGFAVDAK SLPDGVEETHTSLFDGTNCGLRIVGKPVFSVQHHPEASPGPQDSHYLFRRFVNLLRER QGEAALAER" misc_feature 2092252..2093388 /gene="carA" /locus_tag="AGROH133_07598" /note="carbamoyl phosphate synthase small subunit; Reviewed; Region: PRK12564" /db_xref="CDD:183597" misc_feature 2092255..2092659 /gene="carA" /locus_tag="AGROH133_07598" /note="Carbamoyl-phosphate synthase small chain, CPSase domain; Region: CPSase_sm_chain; pfam00988" /db_xref="CDD:144543" misc_feature 2092843..2093379 /gene="carA" /locus_tag="AGROH133_07598" /note="Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; Region: GATase1_CPSase; cd01744" /db_xref="CDD:153215" misc_feature order(2093071..2093073,2093323..2093325,2093329..2093331) /gene="carA" /locus_tag="AGROH133_07598" /note="catalytic site [active]" /db_xref="CDD:153215" misc_feature order(2093146..2093148,2093152..2093154,2093173..2093175, 2093179..2093181,2093260..2093262,2093338..2093343, 2093347..2093352) /gene="carA" /locus_tag="AGROH133_07598" /note="subunit interface [polypeptide binding]; other site" /db_xref="CDD:153215" gene complement(2093467..2094864) /locus_tag="AGROH133_07599" /db_xref="GeneID:10267874" CDS complement(2093467..2094864) /locus_tag="AGROH133_07599" /note="Multi antimicrobial extrusion protein MatE; Na+-driven multidrug efflux pump" /codon_start=1 /transl_table=11 /product="multidrug resistance protein" /protein_id="YP_004279396.1" /db_xref="GI:325293532" /db_xref="GeneID:10267874" /translation="MSSSVVAETVPSGSGSWLSHFKATLALGIPLVGAQLAQLGIHTT DMVIVGQLGAEKLAAMVLAGQFFFVVFIFGSGFSVAVVPMVAQAYGQGDATAARRSLR MGMWVAIAYWILALPIFFNAERILVYLGQNPEVAALTGHYLAIAKFGLLPALLFYVLR GLVSAIGRAGIILYVTIIMLVMNGLMAYALVFGHFGLPVMGMNGAAVVAVIVNAFSFI FIVAYVQTREETRKYELFVRFWRPDWHALFEVLRLGLPISITILAEVTLFAAASILMG QIGTVQLAAHGIALQLASIAFMIPLGLSQAATVRVGVAFGQGDFRNLVRAAIMVYAIA CGIAVCGGILFAAVPEFLAKWFLDAKLPEAAEVLAYASSLVVIAGIFQLVDGIQAVTA GLLRGLKDARIPAMLALISYWPIGLALAWTMAFPLGFGGRGVWFGFVIGLSTAAVLLT IRFVILVKREMKTAR" misc_feature complement(2093488..2094819) /locus_tag="AGROH133_07599" /note="multidrug efflux protein; Reviewed; Region: PRK01766" /db_xref="CDD:179333" misc_feature complement(2094301..2094777) /locus_tag="AGROH133_07599" /note="MatE; Region: MatE; pfam01554" /db_xref="CDD:190033" misc_feature complement(2093599..2094099) /locus_tag="AGROH133_07599" /note="MatE; Region: MatE; pfam01554" /db_xref="CDD:190033" gene 2095194..2097284 /gene="mcpA4" /locus_tag="AGROH133_07611" /db_xref="GeneID:10267875" CDS 2095194..2097284 /gene="mcpA4" /locus_tag="AGROH133_07611" /note="Bacterial chemotaxis sensory transducer, methyl-accepting chemotaxis protein (MCP) signaling domain; methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein mcpA" /protein_id="YP_004279397.1" /db_xref="GI:325293533" /db_xref="GeneID:10267875" /translation="MPKKTNLMTRILFAASSLVVAAFAGFSFYIDSLQHQVTTQAVAE NIDSSGKQAAQSIANWLNGRIMLTETVAKTLAKLPDDDAKLQFLQNDVLTAQFMSTYF GNAESGSFTTFPKLPLPEGYDPRKRPWYLDAVKAGKPVLTEPYSDASTGGLIITAAIP VSINGKLAGVTGSDFSLDSLVSMIKSVDAGKDGYAFLVSKDGKILMHPDAKFVDKPLT DLFKVDTPAISSAISQTEIDGKGKITSFIPVAGLPSVDWYLGFVVDSDVAYSAIGQFR LAATIATILAAAIMIALLATVLSRFIVRPVTQMTAAMERLAAGNLDVAIPGQERSDQI GSMAAAVAVFKSNATERLRLEGDAEQNRTLSEQERNDRERLAAKDAADIQFAVDSLAK GLTHLSNGDLNYRIETPFVTRIDRLRDDFNNSVAKLNVALSTVGQNARAIDAGAGEIR QSADDLAKRTEQQAASVEETAAALEEITTTVKDSARRAEEVGRLVDRTRNNAEQSGII VEDAVRAMEGIEKSSSEISNIIGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQ EVRELAQRSANAAKEIKTLINASTSQVQSGVDLVGNAGKALETIVREVQEINRHIDAI VTSSREQSTGLQEINTAINTIDQGTQQNAAMVEEQTAASHGLASEAAALNELLAQFQL ATATRRQAEYGRAA" misc_feature 2095614..2095838 /gene="mcpA4" /locus_tag="AGROH133_07611" /note="Cache domain; Region: Cache_1; pfam02743" /db_xref="CDD:145738" misc_feature <2096082..2096216 /gene="mcpA4" /locus_tag="AGROH133_07611" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 2096493..2097173 /gene="mcpA4" /locus_tag="AGROH133_07611" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 2096700..2097173 /gene="mcpA4" /locus_tag="AGROH133_07611" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene 2097485..2097964 /locus_tag="AGROH133_07615" /db_xref="GeneID:10267876" CDS 2097485..2097964 /locus_tag="AGROH133_07615" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279398.1" /db_xref="GI:325293534" /db_xref="GeneID:10267876" /translation="MLDLIWRGIAMGVGGTVFMDIWAIVLHRFFGQSAPNWAPVGRWF WHVPKGRIFHDSIATAAPYEHELALGWVSHYAVGILYGIILALIVPASWFSEPSFIQP WIVGIVTVGAGWFLLQPGLGIGWAASKTPNPNKVRFLNLVAHTIFALGMYAVALLMR" misc_feature 2097509..2097958 /locus_tag="AGROH133_07615" /note="Protein of unknown function (DUF2938); Region: DUF2938; pfam11158" /db_xref="CDD:151600" gene complement(2098005..2098934) /locus_tag="AGROH133_07620" /db_xref="GeneID:10267877" CDS complement(2098005..2098934) /locus_tag="AGROH133_07620" /EC_number="3.4.-.-" /note="neutral zinc metallopeptidase; Predicted metalloprotease" /codon_start=1 /transl_table=11 /product="zinc protease protein" /protein_id="YP_004279399.1" /db_xref="GI:325293535" /db_xref="GeneID:10267877" /translation="MEWRGRRQSDNIEDRRGMSAGSGPSGNDPFSRGGMRVPIGRRGG GIGIGGLLLILLISWVLGINPLTLLSGGDISLDGGGTTQQSGEQAGTRPQGQSSDETT AFVRTVLAETEDTWSGIFQSAGETYQKPTLVLFSGQVASACGSASAASGPFYCPGDRK VYLDTSFFSELDKRFGASGDFAQAYVIAHEVGHHVQNLTGVLPEFNRRRQSMSQVDAN KMSVRVELQADCYAGIWGKFTEQKGILETGDLEEALNAAHQIGDDTLQKQTQGYVVPD SFNHGTSAQRMEWFKRGFQNGRVEDCDTFSANI" misc_feature complement(2098020..2098934) /locus_tag="AGROH133_07620" /note="Putative neutral zinc metallopeptidase; Region: Zn_peptidase; cl00988" /db_xref="CDD:120293" gene complement(2099030..2099518) /locus_tag="AGROH133_07624" /db_xref="GeneID:10267878" CDS complement(2099030..2099518) /locus_tag="AGROH133_07624" /note="Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279400.1" /db_xref="GI:325293536" /db_xref="GeneID:10267878" /translation="MSLQPLLDAPLAVQFHVATVVPAAILGAFIFLRPKGTAIHRLLG RIWVTLMVMTSVSTFFIHELRMFYGFSPIHLLSVLTIYGCLQSVLFARRGEIRRHMRI MQSVYLGGIVIAGGFTFVPGRIIHEVAFGDGQPGLVVLFAGVFVFALLSLTVFTQRRR AS" misc_feature complement(2099126..2099518) /locus_tag="AGROH133_07624" /note="Predicted membrane protein (DUF2306); Region: DUF2306; cl02232" /db_xref="CDD:154810" gene 2099612..2100433 /locus_tag="AGROH133_07628" /db_xref="GeneID:10267879" CDS 2099612..2100433 /locus_tag="AGROH133_07628" /note="LytTR transmembrane transcriptional regulator, ; Response regulator of the LytR/AlgR family" /codon_start=1 /transl_table=11 /product="response regulator receiver protein" /protein_id="YP_004279401.1" /db_xref="GI:325293537" /db_xref="GeneID:10267879" /translation="MDHLSLQSTLREMHAILQSRRLWLTFLAILAIFILTGPFGTSET MSFADRLLYWTIVQAGAWTFAISFSILANTILAGSIENMLTRMMIGSLTAALPIGLLL SIMNQIFSGREMGFAAFLKSSLSALPLCAIFCLLSYLTACQSRATATDAVADPNGDAK GEVKSIAPLLERLPPQKRGELLRLSVQDHYTEIVTTRGHQLVLLRFADALKEIGLTEG LQVHRSHWIAISDVVSLRKQAGRLHVITRDGSEIPVSRSHSAAVQARFAAHTPAG" misc_feature 2099744..2100412 /locus_tag="AGROH133_07628" /note="Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]; Region: LytT; COG3279" /db_xref="CDD:33090" misc_feature 2100149..2100406 /locus_tag="AGROH133_07628" /note="LytTr DNA-binding domain; Region: LytTR; cl04498" /db_xref="CDD:156100" gene 2100752..2104078 /gene="carB" /locus_tag="AGROH133_07633" /db_xref="GeneID:10267880" CDS 2100752..2104078 /gene="carB" /locus_tag="AGROH133_07633" /EC_number="6.3.5.5" /note="four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Carbamoylphosphate synthase large subunit (split gene in MJ)" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase large chain" /protein_id="YP_004279402.1" /db_xref="GI:325293538" /db_xref="GeneID:10267880" /translation="MTDPGLADATYVEPITPEVVAKIIAKERPDALLPTMGGQTALNT ALSLKRMGVLDRYNVEMIGAKPEAIDMAEDRALFREAMARIGLETPKSMLANATEIKD ADRKKHEAARAELKAKLSGAELDKALDDLENQWNLGETDRKQRYMAHAIAIAAQAIDH VGLPAIIRPSFTLGGTGGGIAYNRSEFFDIVSGGLDASPTTEVLVEESVLGWKEYEME VVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGV ETGGSNVQFAVNPKDGRLVVIEMNPRVSRSSALASKATGFPIAKIAAKLAIGYTLDEL ENDITGGATPASFEPSIDYVVTKIPRFAFEKFPGASPILTTAMKSVGEVMAIGRTFAE SLQKALRGMETGLTGLDEIEIPGFEEGEGSKNAIRAAIGTPTPDRLRMVAQALRMGMT EEEVHENSKIDPWFIAQFKAIVDMEARVREQGLPQDAENLRMLKAMGFSDARLAILTG KRPKEVAELRNSLNVRPVFKRIDTCAAEFASPTAYMYSTYEIPFVGAARSEAQVSDRK KVVILGGGPNRIGQGIEFDYCCCHAAFALKDAGFEAIMINCNPETVSTDYDTSDRLYF EPLTAEDVIEIMRAEQEKGELVGVIVQFGGQTPLKLAEALEKNGIPILGTAPDMIDLA EDRDRFQKLLMKLDLAQPNNGIAYSVEQARLVASEIGFPLVVRPSYVLGGRAMQIIHS EGQLQTYLLDTVPGLVPEDIKQRYPNDKTGQINTLLGKNPLLFDSYLTNAVEVDVDAL CDGENVFVSGIMEHIEEAGIHSGDSACSLPSRSLSKETLDELERQTTALAKALNVGGL MNVQYAIKDGTIYVLEVNPRASRTVPFVAKTIGAPIAKIAARVMAGEKLDAAIAAYGK KPDPRNLKHIAVKEAVFPFARFPGVDILLGPEMRSTGEVIGLDTDFALAFAKSQLGAG VDLPRSGTVFVSVRDDDKDRVLPAIRILVESGFRVLATGGTQRFLAEQGINAEKINKV QEGRPHIEDAIRNRQVQLVINTTDSNKAISDSKSLRRATLMQKVPYYTTMAGAEAAAL AIKALKAGNLEVKPLQSYFL" misc_feature 2100752..2104072 /gene="carB" /locus_tag="AGROH133_07633" /note="carbamoyl phosphate synthase large subunit; Reviewed; Region: carB; PRK05294" /db_xref="CDD:179998" misc_feature <2100752..2100955 /gene="carB" /locus_tag="AGROH133_07633" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature 2100971..2101753 /gene="carB" /locus_tag="AGROH133_07633" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 2102027..2102395 /gene="carB" /locus_tag="AGROH133_07633" /note="Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Region: CPSase_L_D3; pfam02787" /db_xref="CDD:190426" misc_feature 2102447..2102782 /gene="carB" /locus_tag="AGROH133_07633" /note="Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289" /db_xref="CDD:189488" misc_feature 2102801..2103469 /gene="carB" /locus_tag="AGROH133_07633" /note="Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; cl03087" /db_xref="CDD:194530" misc_feature 2103686..2103991 /gene="carB" /locus_tag="AGROH133_07633" /note="Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways...; Region: MGS_CPS_II; cd01424" /db_xref="CDD:29636" misc_feature order(2103701..2103703,2103719..2103721,2103779..2103781, 2103785..2103790,2103836..2103838,2103902..2103910) /gene="carB" /locus_tag="AGROH133_07633" /note="IMP binding site; other site" /db_xref="CDD:29636" misc_feature order(2103782..2103784,2103794..2103796,2103818..2103820, 2103824..2103829,2103833..2103835,2103869..2103871) /gene="carB" /locus_tag="AGROH133_07633" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29636" misc_feature 2103977..2103985 /gene="carB" /locus_tag="AGROH133_07633" /note="partial ornithine binding site; other site" /db_xref="CDD:29636" gene complement(2104162..2105304) /locus_tag="AGROH133_07634" /db_xref="GeneID:10267881" CDS complement(2104162..2105304) /locus_tag="AGROH133_07634" /note="diguanylate cyclase (GGDEF) domain; FOG: GGDEF domain" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="YP_004279403.1" /db_xref="GI:325293539" /db_xref="GeneID:10267881" /translation="MMLGELDLATVILMQKCSYIVGMLSFIYLKLTNRGLHGPTALAA GFAAMAAGSTLAGYGEWGIMSPALWQFGSIVFGIVGYALIWLGLKIVSDGRAASRGTV SAVCLIALLAIVLAQQVADNNAYRAALFNGCAAVAYLAGAGGLFARWRKEPLLSRFAL GAIAGISGLISLSVAKSVLLPQYAAIDLVNAFFLIIMLNFAIALFVMMLVAERSERKL LVLANTDPLTGVKNRRFFFQAMPGVPGPNDAAMLLDIDHFKSINDRFGHAVGDSVLQE VAKRIGGSIRGGDVLARYGGEEFIIFLPGAGVQKACMIGERIRDAIAITEVDCGGLRV GVTISIGVATSGDMRCDLQTLAEMADRALYRAKTDGRNCVREALAA" misc_feature complement(2104180..2104638) /locus_tag="AGROH133_07634" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(2104414..2104416,2104543..2104545)) /locus_tag="AGROH133_07634" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(2104411..2104422,2104426..2104428, 2104492..2104494,2104504..2104506,2104516..2104521, 2104528..2104530)) /locus_tag="AGROH133_07634" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(2104354..2104356,2104438..2104440)) /locus_tag="AGROH133_07634" /note="I-site; other site" /db_xref="CDD:143635" gene complement(2105454..2106899) /locus_tag="AGROH133_07642" /db_xref="GeneID:10267882" CDS complement(2105454..2106899) /locus_tag="AGROH133_07642" /EC_number="2.7.7.7" /note="Phage SPO1 DNA polymerase-related protein, Uracil DNA glycosylase superfamily; Uracil-DNA glycosylase" /codon_start=1 /transl_table=11 /product="DNA polymerase bacteriophage-type" /protein_id="YP_004279404.1" /db_xref="GI:325293540" /db_xref="GeneID:10267882" /translation="MYGPVLEGRGDFGEWRDAARAALAANVPPEAIDWRLRDEKAGLL DFAGEPLPAARADDVQVSVPASFVTLAQAIICHSDPGRFALLYRLLWRLKRDRALLQF KSDADVSEARQLEKSVRRDCHKMTAFVRFKELSLPQGQGGRRRFVAWFEPDHFIVERT APFFQRRFTDMDWLIATPNGSARWDGNVLETSRQAASKPELKDETDELWRTYYANIFN PARLKIKAMTAEMPKKYWKNLPEAELIPGLVLGAEARVLEMAAKAASQPQPFHHRLQA AASAREEPPPAPDGTLASLAQEAGQCTRCALHCKATQTVFGMGPEDAKVMIVGEQPGD HEDLAGKPFVGPAGQLFDRTLVEAGIDRKKLYVTNAVKHFKYEARGKRRIHQRPDAGE VQQCRWWLNKEIELVRPKLIVAMGATALYALTGGKEKVSEVRGRPIPMQEERTLFVTV HPSYLLRLPDSQQKEAEMQNFRNEIDFIRLF" misc_feature complement(2106174..2106872) /locus_tag="AGROH133_07642" /note="probable DNA metabolism protein; Region: SAM_7_link_chp; TIGR03915" /db_xref="CDD:188430" misc_feature complement(2105466..2106170) /locus_tag="AGROH133_07642" /note="Uracil DNA glycosylase superfamily; Region: UDG; cl00483" /db_xref="CDD:193838" gene complement(2106899..2108131) /locus_tag="AGROH133_07643" /db_xref="GeneID:10267883" CDS complement(2106899..2108131) /locus_tag="AGROH133_07643" /note="Elongator protein 3/MiaB/NifB; Predicted DNA-binding protein with the Helix- hairpin-helix motif" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279405.1" /db_xref="GI:325293541" /db_xref="GeneID:10267883" /translation="MKKSIRQRLAILSDAAKYDASCASSGTTKRSSAASGGLGSTEGS GICHAYAPDGRCISLLKILLTNFCIYDCAYCINRSSSNVERARFTAEEVVWLTLEFYR RNYIEGLFLSSGIIRSSDHTMEEMVRVARELRVTHGFRGYIHLKSIPEASPKLIEEAG LYADRLSINIELPTDSGVSRFAPEKQPANIRRSMADIRLKIEEAGEPTVRTRKTKRFA PAGQSTQMIVGADGADDSTILSTSARLYGSYGLRRVYYSAFSPIPDSSKNLPLIKPPL MREHRLYQADWLYRFYGFDIGEITAIGGNGMLDLDIDPKLAWALKNRDRFPVDVNVAD REILLRVPGFGTKTVASILSSRRFRRLRLEDIARFGVSLKKVKAFIVAEGWTPGKLTE RPDLRAMFAPQPEQLSLL" misc_feature complement(2106902..2108125) /locus_tag="AGROH133_07643" /note="Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]; Region: COG4277" /db_xref="CDD:33999" misc_feature complement(<2107607..2107948) /locus_tag="AGROH133_07643" /note="Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster...; Region: Radical_SAM; cl14056" /db_xref="CDD:197444" gene 2108353..2108829 /gene="greA" /locus_tag="AGROH133_07644" /db_xref="GeneID:10267884" CDS 2108353..2108829 /gene="greA" /locus_tag="AGROH133_07644" /note="necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; Transcription elongation factor" /codon_start=1 /transl_table=11 /product="transcription elongation factor GreA" /protein_id="YP_004279406.1" /db_xref="GI:325293542" /db_xref="GeneID:10267884" /translation="MVEKVPMTHGGFIKLQEELRFRQQEERPRIIEAIAEARAHGDLS ENAEYHAAKEAQSHNEGRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEE RIYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQWG" misc_feature 2108353..2108823 /gene="greA" /locus_tag="AGROH133_07644" /note="transcription elongation factor GreA; Reviewed; Region: greA; PRK00226" /db_xref="CDD:178936" misc_feature 2108365..2108577 /gene="greA" /locus_tag="AGROH133_07644" /note="domain; Region: GreA_GreB_N; pfam03449" /db_xref="CDD:190636" misc_feature 2108593..2108817 /gene="greA" /locus_tag="AGROH133_07644" /note="C-term; Region: GreA_GreB; pfam01272" /db_xref="CDD:189919" gene 2108921..2109976 /gene="lpcC" /locus_tag="AGROH133_07645" /db_xref="GeneID:10267885" CDS 2108921..2109976 /gene="lpcC" /locus_tag="AGROH133_07645" /EC_number="2.-.-.-" /note="glycosyl transferases group 1; glycosyltransferase" /codon_start=1 /transl_table=11 /product="lipopolysaccharide core biosynthesis mannosyltransferase LpcC" /protein_id="YP_004279407.1" /db_xref="GI:325293543" /db_xref="GeneID:10267885" /translation="MPHASLKDVQVLAPNFKRRLSGVTSTIVQLIPVQNRLGQKVAVI GPGLPQHLPHVRFRDLWRLWQNGPLSGPRIWHARRNLEMLPGILIRDVLRMKVKLMFT SAAQRRHSAYTRFLISKMDAVVATSGRSGSFLEVPHSVVMHGVDTELFHPATGPEDTI ASTGLPGQFLIGCFGRVRHQKGTDLFVRAMIELLPDYPEWTAVISGRVTAEHKAFADK LVADVAAAGLADRIAFQGEVDDIKPWYRRLTLYVAPSRNEGFGLTPLEAMASETAVVA SNAGAYEEMIVKGETGMVVEAGDYASLRDAIKTYLADPALARDHARAGLSHVRTAFPL EKEATSLGTIYDALRRG" misc_feature 2108945..2109973 /gene="lpcC" /locus_tag="AGROH133_07645" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" misc_feature 2108951..2109955 /gene="lpcC" /locus_tag="AGROH133_07645" /note="This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801" /db_xref="CDD:99974" gene complement(2110008..2110475) /gene="lrp" /locus_tag="AGROH133_07646" /db_xref="GeneID:10267886" CDS complement(2110008..2110475) /gene="lrp" /locus_tag="AGROH133_07646" /note="Bacterial regulatory proteins, AsnC/Lrp; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="Leucine-responsive regulatory protein" /protein_id="YP_004279408.1" /db_xref="GI:325293544" /db_xref="GeneID:10267886" /translation="MTSVELDAIDLKILRELQRDGRMTNVELAERVGISAPPCLRRVR KLEEADVIEGYHAMLNAPKLGFDLVAFCMVGLKRQSDSNLKAFAAATAGWSLVRQAWM VSGESDFLLHCIARNLTEFQDFVIEVLTADENVDTVRTMLTIRQVKRVGLVEI" misc_feature complement(2110011..2110475) /gene="lrp" /locus_tag="AGROH133_07646" /note="Transcriptional regulators [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:31711" misc_feature complement(<2110311..2110457) /gene="lrp" /locus_tag="AGROH133_07646" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature complement(order(2110311..2110316,2110332..2110337, 2110341..2110346,2110353..2110358,2110362..2110373, 2110398..2110406,2110446..2110454)) /gene="lrp" /locus_tag="AGROH133_07646" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(2110395..2110397,2110404..2110406)) /gene="lrp" /locus_tag="AGROH133_07646" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" misc_feature complement(2110038..2110256) /gene="lrp" /locus_tag="AGROH133_07646" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 2110730..2111704 /gene="trxB" /locus_tag="AGROH133_07647" /db_xref="GeneID:10267887" CDS 2110730..2111704 /gene="trxB" /locus_tag="AGROH133_07647" /EC_number="1.8.1.9" /codon_start=1 /transl_table=11 /product="Thioredoxin reductase" /protein_id="YP_004279409.1" /db_xref="GI:325293545" /db_xref="GeneID:10267887" /translation="MSARHTKVLIIGSGPAGYTAAIYAARAMLKPVLIAGMEQGGQLM ITTDVENYPGFADPIQGPWLMDQMLKQATHVGAEIVSDLVTEVETNTRPFVVKTDSGQ VWTADTLIIATGAKAKWLGIESEQHFQGFGVSACATCDGFFYRNKDVIVVGGGNSAVE EALYLAHIAKSVTVVHRRDSFRSEKILQERLFAKENVKILWNTEIAEITGAPAKPPMP PSVSGVRLRDTKTGVISDTPIDGVFVAIGHAPAVELFKGKVKLKDNGYMWTAPDSTAT DVEGIFAAGDVTDDIYRQAITAAGMGCMAALEAERYLTAQQPLAVAAE" misc_feature 2110748..2111668 /gene="trxB" /locus_tag="AGROH133_07647" /note="thioredoxin-disulfide reductase; Region: TRX_reduct; TIGR01292" /db_xref="CDD:162288" misc_feature 2111174..2111359 /gene="trxB" /locus_tag="AGROH133_07647" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene 2111723..2112625 /locus_tag="AGROH133_07649" /db_xref="GeneID:10267888" CDS 2111723..2112625 /locus_tag="AGROH133_07649" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004279410.1" /db_xref="GI:325293546" /db_xref="GeneID:10267888" /translation="MAMPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALE QDVGVKLFHRHARGLILTEQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTT VGLGQGWLTDKVQEFLQLYPEMSIQLILDNEELDVNMRHADCAIRLRQPQQSDLIQRK LFTVHMHVYAAPSYINRHGEPQSIEDLDNHRIISFGEPAPNYLLDVNWLENAGRSSDN TRIPHLQINSQTSIKRACLLGIGIACLPDYIVGRDPGLIQLSLAADIPSFDTYFCYPD EMKNAAKLKAFRDFVVAKARNWNF" misc_feature 2111735..2112610 /locus_tag="AGROH133_07649" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 2111741..2111920 /locus_tag="AGROH133_07649" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2112005..2112595 /locus_tag="AGROH133_07649" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422" /db_xref="CDD:176114" misc_feature order(2112035..2112037,2112047..2112049,2112164..2112166, 2112206..2112208,2112212..2112214,2112407..2112409, 2112458..2112460,2112530..2112532) /locus_tag="AGROH133_07649" /note="putative effector binding pocket; other site" /db_xref="CDD:176114" misc_feature order(2112038..2112043,2112053..2112058,2112062..2112067, 2112074..2112076,2112086..2112088,2112092..2112112, 2112293..2112295,2112389..2112403,2112422..2112427, 2112434..2112436) /locus_tag="AGROH133_07649" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176114" gene 2113201..2113515 /locus_tag="AGROH133_07651" /db_xref="GeneID:10267889" CDS 2113201..2113515 /locus_tag="AGROH133_07651" /note="Bacterial regulatory protein, ArsR; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, ArsR family" /protein_id="YP_004279411.1" /db_xref="GI:325293547" /db_xref="GeneID:10267889" /translation="MSDIRETQMNPEEILKALSHPARLKFLEWLKSPESHFCQDHPLS MGVCANQFQISGLSQSTVSSHLAVLQAAGLIRSKKVGQWVFFERNEETIDAFRNYLQA NL" misc_feature 2113243..2113470 /locus_tag="AGROH133_07651" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature order(2113243..2113248,2113252..2113254,2113261..2113263, 2113270..2113275,2113282..2113287,2113318..2113320, 2113417..2113419) /locus_tag="AGROH133_07651" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature order(2113246..2113251,2113261..2113269,2113330..2113338, 2113372..2113383,2113387..2113392,2113399..2113404, 2113408..2113413,2113429..2113437,2113450..2113458) /locus_tag="AGROH133_07651" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature order(2113330..2113332,2113339..2113341) /locus_tag="AGROH133_07651" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene 2113643..2114755 /locus_tag="AGROH133_07653" /db_xref="GeneID:10267890" CDS 2113643..2114755 /locus_tag="AGROH133_07653" /EC_number="1.-.-.-" /note="NADH:flavin oxidoreductase / NADH oxidase family; NADH:flavin oxidoreductases, Old Yellow Enzyme family" /codon_start=1 /transl_table=11 /product="FMN-binding oxidoreductase" /protein_id="YP_004279412.1" /db_xref="GI:325293548" /db_xref="GeneID:10267890" /translation="MTSLFEPAQAGDIALANRIVMAPLTRNRSPGAIPNNLNATYYEQ RATAGLIVTEGTPISQQGQGYADVPGLYKKEAVEGWKKITDGVHVAGGKIVAQIWHVG RISHTSLQPHGGQPVAPSAIIAKSKTYIINDDGTGAFAETSEPRALTIDDIGLILEDY RTGARAALEAGFDGVEIHAANGYLIEQFLKSSTNQRTDEYGGSIENRARFLLEVVDAV AEEIGAGRTGIRLSPVTPANDIFEADPQPLYNYVAEELGKRNLAFIHVVEGATGGPRD FKQGDKPFDYAAFKAAYRNAGGKGLWIANNGYDRESAIEAVESGKVDAVAFGKAFIAN PDLVRRLKDNAPLNEPNQPTFYGGGAEGYTDYPALG" misc_feature 2113643..2114749 /locus_tag="AGROH133_07653" /note="NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902" /db_xref="CDD:32086" misc_feature 2113649..2114698 /locus_tag="AGROH133_07653" /note="Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933" /db_xref="CDD:73381" misc_feature order(2113709..2113711,2113715..2113717,2113805..2113807, 2113931..2113933,2114330..2114332,2114558..2114560, 2114618..2114620,2114624..2114632) /locus_tag="AGROH133_07653" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:73381" misc_feature order(2113709..2113711,2113715..2113717,2113805..2113807, 2113931..2113933,2113937..2113939,2113958..2113960, 2114174..2114176,2114183..2114185,2114189..2114191, 2114330..2114332,2114351..2114353,2114558..2114560, 2114618..2114620,2114624..2114629) /locus_tag="AGROH133_07653" /note="active site" /db_xref="CDD:73381" misc_feature order(2113715..2113717,2113937..2113939,2114174..2114176, 2114183..2114185,2114189..2114191,2114627..2114629) /locus_tag="AGROH133_07653" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:73381" misc_feature 2114189..2114191 /locus_tag="AGROH133_07653" /note="catalytic residue [active]" /db_xref="CDD:73381" gene complement(2114812..2115201) /locus_tag="AGROH133_07654" /db_xref="GeneID:10267891" CDS complement(2114812..2115201) /locus_tag="AGROH133_07654" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279413.1" /db_xref="GI:325293549" /db_xref="GeneID:10267891" /translation="MVTVANGFSRRRRMFAVISAGVPVLIFAQVLLAGLSIYYDGSLL VVHKGLGMLIAVPIVSLVVLALRHDDLRPNLGRALVLLALYCLQVALMSIGRETGSGF LQALHVANAFVMGAFSDFAARQTRGLS" gene complement(2115201..2116142) /locus_tag="AGROH133_07660" /db_xref="GeneID:10267892" CDS complement(2115201..2116142) /locus_tag="AGROH133_07660" /note="Nucleoside-diphosphate-sugar epimerases" /codon_start=1 /transl_table=11 /product="NAD-dependent epimerase/dehydratase" /protein_id="YP_004279414.1" /db_xref="GI:325293550" /db_xref="GeneID:10267892" /translation="MLLQRGWRVRAMTRRSAPVDAVDGVERVTGDAMNREEVVKAAKG AGLIVHAVNPPGYRNWDSQVLPMLDNTIAAAEACGARIVFPGSIYNFGPDAFPLLTED SPQKPFTRKGGLRVEMERRLKMASMRGVPVLIVRTGDFFGPDAKNNWFSQMLVRPGKP VRSVQNPAVPNAGHQWAYLPDVAEIIGRLLDRSDELQTFAVYHMEGVWDFDGLQLVGA IERAVGHPVKMRRLSWLAVGLAAPFVPLFREVMEMKYLWQMPIRMSNRKLVEFLGAEP RTPIDAAVSATLASLGCLAEVQLPAGLHHATDAGGRV" misc_feature complement(2115270..2116139) /locus_tag="AGROH133_07660" /note="Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451" /db_xref="CDD:30800" misc_feature complement(2115279..2116139) /locus_tag="AGROH133_07660" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(order(2115723..2115734,2115810..2115812, 2115822..2115824,2115882..2115890,2115984..2115992, 2116098..2116106)) /locus_tag="AGROH133_07660" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(2115810..2115812,2115822..2115824, 2115882..2115884,2115951..2115953)) /locus_tag="AGROH133_07660" /note="active site" /db_xref="CDD:187535" gene 2116152..2117273 /locus_tag="AGROH133_07661" /db_xref="GeneID:10267893" CDS 2116152..2117273 /locus_tag="AGROH133_07661" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator LysR family" /protein_id="YP_004279415.1" /db_xref="GI:325293551" /db_xref="GeneID:10267893" /translation="MAADATIRPNNQRQRPVILCCICVDFIYHCHYSFFWAGVSGYQA IYEIVQMSGAAIQNLIIRSRDVSWDFYRTFLSVLRDGSLSAAARELGITQPTAGRHIG ALEEAIGFPLFIRSPHGLMPTEAALALRPYAENLAATAAALMRAASGEVGKIEGTVRI SASDIIGVEMLPPIIAAMQEIHPRLEIELSLSDTLEDLLRREADIAIRMTEPQQDAIV MRYIGNFRLGFHATRDYLARAGIPKNMEELNNHRMIGFDRKTPFIRAAIQRMRSLDPE IPDIEEISFEIRADSNLAQLAMIRASAGIGVCQIGLARKDPRLVQVLPKTDIPLHAWV AMHENLKTSPRCRAVFSALVDGLKAHLKETDPGAPPQRR" misc_feature 2116365..2117240 /locus_tag="AGROH133_07661" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 2116365..2116529 /locus_tag="AGROH133_07661" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2116617..2117147 /locus_tag="AGROH133_07661" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(2116665..2116670,2116674..2116679,2116686..2116688, 2116698..2116700,2116704..2116724,2116983..2116985, 2117010..2117024,2117040..2117045,2117049..2117054) /locus_tag="AGROH133_07661" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(2117279..2117386) /locus_tag="AGROH133_07663" /db_xref="GeneID:10267894" CDS complement(2117279..2117386) /locus_tag="AGROH133_07663" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279416.1" /db_xref="GI:325293552" /db_xref="GeneID:10267894" /translation="MMECVNISGENSITLHASPVCLADLRAQGRAASML" gene complement(2117383..2117649) /locus_tag="AGROH133_07664" /db_xref="GeneID:10267895" CDS complement(2117383..2117649) /locus_tag="AGROH133_07664" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279417.1" /db_xref="GI:325293553" /db_xref="GeneID:10267895" /translation="MTKVVYEVVEHDGGFAYRMNGAYSETFPTYADAVEAARIVAAEQ QVGGDDEEISYQDERGQWHEEYSQGGDRPEAEVVDKISPPARPF" gene 2117847..2118953 /gene="chaA" /locus_tag="AGROH133_07665" /db_xref="GeneID:10267896" CDS 2117847..2118953 /gene="chaA" /locus_tag="AGROH133_07665" /note="Sodium/calcium exchanger membrane region" /codon_start=1 /transl_table=11 /product="Ca2+/H+ antiporter" /protein_id="YP_004279418.1" /db_xref="GI:325293554" /db_xref="GeneID:10267896" /translation="MAGSILKQERMLLLAIPVAAVAYMAEHAIFEAGKTASLIAAIGL IGMIVLVSMRVAHHAEILAAKVGDPYGTMILTLSAVAVEVLILAIIMSESNSPTLVRD TIYSAVMIDINGILGLAALLGGLRHGEQPYNDDSGKTYGVMILTAMGISMIVPEFIPK ESWHVYSAFTIVAMIALYALFLKMQVGPHSYFFSYAYPRKAHPSGHPSGDHTEDEEEG SVPLSIGLIVAGVVLIGVLAEFMAAFLSQSLEGTSAPPALMAVVVATISASPEILTAL RSALRNRMQAVVNIAMGASLSTVILTVPVMEGIALYTGQPFIMAMTPVQTVMVFITLI AAAINLNDGETNAIEGMTHFILFATFIMLLFLGL" misc_feature 2117847..2118950 /gene="chaA" /locus_tag="AGROH133_07665" /note="Ca2+/H+ antiporter [Inorganic ion transport and metabolism]; Region: ChaA; COG0387" /db_xref="CDD:30736" misc_feature 2118570..2118938 /gene="chaA" /locus_tag="AGROH133_07665" /note="Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699" /db_xref="CDD:190072" gene complement(2119013..2120215) /gene="aatA" /locus_tag="AGROH133_07677" /db_xref="GeneID:10267897" CDS complement(2119013..2120215) /gene="aatA" /locus_tag="AGROH133_07677" /EC_number="2.6.1.1" /note="catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Aspartate/tyrosine/aromatic aminotransferase" /codon_start=1 /transl_table=11 /product="aspartate aminotransferase A" /protein_id="YP_004279419.1" /db_xref="GI:325293555" /db_xref="GeneID:10267897" /translation="MAFLADILSRVKPSATIAVTQKARELKAKGRDVISLGAGEPDFD TPENIKEAAIDAIKRGETKYTPVSGIPELRKAIADKFKRENGLDYKPEQTIVGTGGKQ ILFNAFMATLNPGDEVVIPAPYWVSYPEMVAICGGTPVFVDTTLEDNFKLKPEALEKA ITPKTKWFVFNSPSNPSGAAYSHDELKALTDVLVKHPHVWVLTDDMYEHLTYGDFKFV TPVEVEPSLYDRTLTMNGVSKAYAMTGWRIGYAAGPLPLIKAMDMIQGQQTSGASSIA QWAAVEALNGTQDFIPANKKIFEGRRDLVVSMLNQAKGINCPAPEGAFYVYPSCAGMI GKTAPSGKVIESDVDFVSELLEAEGVAVVQGSAFGLGPNFRISYATSEALLEEACKRI QRFCADCR" misc_feature complement(2119034..2120209) /gene="aatA" /locus_tag="AGROH133_07677" /note="aspartate aminotransferase; Provisional; Region: PRK08361" /db_xref="CDD:169403" misc_feature complement(2119034..2120116) /gene="aatA" /locus_tag="AGROH133_07677" /note="Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609" /db_xref="CDD:99734" misc_feature complement(order(2119475..2119477,2119499..2119504, 2119508..2119510,2119595..2119597,2119691..2119693, 2119841..2119843,2119913..2119921)) /gene="aatA" /locus_tag="AGROH133_07677" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(2119379..2119381,2119388..2119390, 2119475..2119483,2119616..2119618,2119811..2119813, 2119910..2119912)) /gene="aatA" /locus_tag="AGROH133_07677" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(2119499..2119501) /gene="aatA" /locus_tag="AGROH133_07677" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 2120425..2121354 /locus_tag="AGROH133_07678" /db_xref="GeneID:10267898" CDS 2120425..2121354 /locus_tag="AGROH133_07678" /note="EAL; FOG: EAL domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279420.1" /db_xref="GI:325293556" /db_xref="GeneID:10267898" /translation="MAPKSIFSSLVREVDGTWSTAYGTFNLKSALQPIFRRTMNGALD IDSFEGLVRPHRNGEPVTPGEFFSLVAPEDIENIDSILRTIHILNTGRLNRSRARVFV NFHPGLFQTPAKMRQEVERMRLTAHEAGMTADRIVCEISEKKVSDTQMVADFAYHMHD IGFRVALDDYGAGDSDIDRVKLIKPDYVKFEAGWVRDFMQNSAGAALLRVIVSQFRDD GIEPVFEGLETGRQVDICEDLGVLLMQGYVLAKPELAPTSFDARFPELGSGYFSPSPR SDRSAAAPAFPREDRPAEPHTLRQTRTFGKRGL" misc_feature 2120503..2121180 /locus_tag="AGROH133_07678" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene 2121500..2121811 /locus_tag="AGROH133_07679" /db_xref="GeneID:10267899" CDS 2121500..2121811 /locus_tag="AGROH133_07679" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279421.1" /db_xref="GI:325293557" /db_xref="GeneID:10267899" /translation="MFTNDRTSVERLRAQRTLFSLWMAIAAFLVVVTMAAGIATSANA APQAIDTLQTSSIPQVTATARAGGHMLLVIFSAAAFISLGIGGLALTRRSLKDEARRH K" gene 2121953..2122855 /locus_tag="AGROH133_07683" /db_xref="GeneID:10267900" CDS 2121953..2122855 /locus_tag="AGROH133_07683" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_004279422.1" /db_xref="GI:325293558" /db_xref="GeneID:10267900" /translation="MTRIQANMLLLLAAAIWGGGFVAQSSAMASIGPFWFVGLRFAIA AIAVLPFALMENRSKKSPPRRREIGGFILVGLALFGGATTQQVGLLTTTVTNSSFLTG LYVIFVPVIAVVLYRRHPHWIVWPGALMMLGGIFLLSGGAFEALTQGDILSIICAFFW AIQITLAGRFVSESGRPLALSCTQFAICSLLSCMIGLAVEPISMASIEGSLAEILYVG LVSSGLAFVLQVVAQRYTTAPQAAIFLSSEALFGALLASIFLNETISSAGYIGCVIIF AAILIVELVPELTRKRQKTAVGTA" misc_feature 2121998..2122369 /locus_tag="AGROH133_07683" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" misc_feature 2122001..2122792 /locus_tag="AGROH133_07683" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:162128" misc_feature 2122424..2122798 /locus_tag="AGROH133_07683" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene 2122876..2123031 /locus_tag="AGROH133_07695" /db_xref="GeneID:10267901" CDS 2122876..2123031 /locus_tag="AGROH133_07695" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279423.1" /db_xref="GI:325293559" /db_xref="GeneID:10267901" /translation="MFRGKIVPPHSKFCPETEGNRQLFHQLSNMRKKCATTRRNSTAG FYPTKSP" gene 2123299..2123514 /gene="cspA" /locus_tag="AGROH133_07696" /db_xref="GeneID:10267902" CDS 2123299..2123514 /gene="cspA" /locus_tag="AGROH133_07696" /note="Cold shock, CspA; Cold shock proteins" /codon_start=1 /transl_table=11 /product="cold shock protein" /protein_id="YP_004279424.1" /db_xref="GI:325293560" /db_xref="GeneID:10267902" /translation="MAETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQASGLSGLS ENQKVSFDTEPDRRGKGPKAVNLQIAG" misc_feature 2123305..2123505 /gene="cspA" /locus_tag="AGROH133_07696" /note="Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein...; Region: CSP_CDS; cd04458" /db_xref="CDD:88424" misc_feature order(2123323..2123325,2123350..2123352,2123383..2123385, 2123476..2123478) /gene="cspA" /locus_tag="AGROH133_07696" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:88424" misc_feature order(2123341..2123361,2123380..2123391) /gene="cspA" /locus_tag="AGROH133_07696" /note="RNA-binding motif; other site" /db_xref="CDD:88424" gene complement(2123607..2124275) /locus_tag="AGROH133_07697" /db_xref="GeneID:10267903" CDS complement(2123607..2124275) /locus_tag="AGROH133_07697" /note="Metallo-beta-lactamase superfamily; Zn-dependent hydrolases, including glyoxylases" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="YP_004279425.1" /db_xref="GI:325293561" /db_xref="GeneID:10267903" /translation="MSDRETRDMGKLQAGIIPVTPFEQNCTILFDEDTKEGVVVDPGG DVDVILQVVSENGITLKEIWLTHGHLDHAGGAKELREKLSLPVIGPHEDDRPLLERIE TQAEKYGISGLQNVLPDRWLNEGDTVSFGDHVFEVYHCPGHAPGHVIYYNRDQQFAHV GDVLFAGSVGRTDLPGGNHEQLMASIRDKLLPLGDDVGFICGHGPGGRLGEERRTNPY LKGI" misc_feature complement(2123610..2124251) /locus_tag="AGROH133_07697" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene 2124486..2125085 /locus_tag="AGROH133_07698" /db_xref="GeneID:10267904" CDS 2124486..2125085 /locus_tag="AGROH133_07698" /note="Protein of unknown function DUF1236; Uncharacterized protein with a bacterial SH3 domain homologue" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279426.1" /db_xref="GI:325293562" /db_xref="GeneID:10267904" /translation="MDKTLKMLMAGGAFALMAGYANAAMVATTASDVSVRSGPGEDYP ELGLATRGSNAVLDGCMDGSSWCRIEVNGLRGWAHADYLNVMYEGSPVILEQRRSDIS VPVVTYEKTSSVQAEPNPGDPNLGRVGEVNPPETVISYIDEHPADTVTFDGEVAVGST LPSDTRLVEIPDYQYRYVQVNDVPVLVEPSTRRIVYVYQ" misc_feature 2124576..2124737 /locus_tag="AGROH133_07698" /note="Bacterial SH3 domain; Region: SH3_3; cl02551" /db_xref="CDD:141512" misc_feature 2124903..2125082 /locus_tag="AGROH133_07698" /note="Protein of unknown function (DUF1236); Region: DUF1236; pfam06823" /db_xref="CDD:148435" gene 2125318..2125815 /gene="petP" /locus_tag="AGROH133_07701" /db_xref="GeneID:10267905" CDS 2125318..2125815 /gene="petP" /locus_tag="AGROH133_07701" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_004279427.1" /db_xref="GI:325293563" /db_xref="GeneID:10267905" /translation="MPPQSLKTAAARQTPALPKVDDGKIDFDTIEALFFAYRDFVSDP DVILSKLEYGRAHHRVVYFVSRQPGMTVADLLDTLQITKQSLARVLKQLIDDGYIRQM AGPEDRRQRRLYPTLTGRELALALSEPQSRRIDRALEGLGPDARACVRKFLAQMRSPT PGEGD" misc_feature 2125456..2125749 /gene="petP" /locus_tag="AGROH133_07701" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 2125818..2126531 /gene="petR" /locus_tag="AGROH133_07702" /db_xref="GeneID:10267906" CDS 2125818..2126531 /gene="petR" /locus_tag="AGROH133_07702" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004279428.1" /db_xref="GI:325293564" /db_xref="GeneID:10267906" /translation="MATATTKLPPADDDAAHLLIVDDDARIRNLLQRFLGDKGYRISV AADAAEARRKMVGIRFDLLILDVMMPGENGLSLTRSLNENKSVPVILLTARSEADSRI AGLEAGADDYLAKPFDPRELVLRINNILRRNTSPDTPKIEQIMFGPYSFSIPRKELRR GAETIRLTDREQEIMLLFALRAGDTIPRHELVEAESEVGERTIDVQINRLRRKIEDDP ANPVYLQTVRGIGYRLSVD" misc_feature 2125866..2126513 /gene="petR" /locus_tag="AGROH133_07702" /note="osmolarity response regulator; Provisional; Region: ompR; PRK09468" /db_xref="CDD:181883" misc_feature 2125872..2126207 /gene="petR" /locus_tag="AGROH133_07702" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2125881..2125886,2126013..2126015,2126037..2126039, 2126094..2126096,2126151..2126153,2126160..2126165) /gene="petR" /locus_tag="AGROH133_07702" /note="active site" /db_xref="CDD:29071" misc_feature 2126013..2126015 /gene="petR" /locus_tag="AGROH133_07702" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2126022..2126027,2126031..2126039) /gene="petR" /locus_tag="AGROH133_07702" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2126160..2126168 /gene="petR" /locus_tag="AGROH133_07702" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 2126247..2126519 /gene="petR" /locus_tag="AGROH133_07702" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(2126319..2126321,2126376..2126381,2126421..2126423, 2126430..2126432,2126454..2126459,2126493..2126495, 2126508..2126510) /gene="petR" /locus_tag="AGROH133_07702" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 2126562..2127941 /gene="envZ" /locus_tag="AGROH133_07703" /db_xref="GeneID:10267907" CDS 2126562..2127941 /gene="envZ" /locus_tag="AGROH133_07703" /EC_number="2.7.3.-" /note="two component sensor kinase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor histidine kinase" /protein_id="YP_004279429.1" /db_xref="GI:325293565" /db_xref="GeneID:10267907" /translation="MASLDFLITVRNSGVAKTWRAFTRWLRHWLPTGLYTRSLLIIIL PMILLQGVVAAVFMERHWQLVTERLSSAVTRDIAAIIELLQTDEEEDDYQRVIRIARE KLGLSIYIEPKADLPAPRPEPLFSILDTILANQLTQQIGRPFWIDTYGNGSLVEIRVQ LEDKTLRVFTSRSAAYASNTHIFLVWMVGASLVLIAISILFLRGQIKPIEALAKAAEN FGRGQKISAYSPRGADEVRRAGLAFILMRERIERQMEQRTAMLNGVSHDLRTILTRFK LQLALAGDNPDLEGLDKDVEDMQSMLEAYLTFARTDVEEDVGTLELPALLEKIDYDFE LHGKKFSYELYNIDQIIARPNALSRLVANLAENARRYASKLHIDIRKAPRSIIMTFDD DGPGIPEASREDVFKPFFRLDEARNLNASGTGLGLSIVRDIARSHGGDVSLDDSPMGG LRVIVKIPA" misc_feature 2126991..2127935 /gene="envZ" /locus_tag="AGROH133_07703" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:30987" misc_feature 2127108..2127290 /gene="envZ" /locus_tag="AGROH133_07703" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 2127630..2127932 /gene="envZ" /locus_tag="AGROH133_07703" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(2127648..2127650,2127660..2127662,2127669..2127671, 2127729..2127731,2127735..2127737,2127741..2127743, 2127747..2127752,2127831..2127842,2127888..2127890, 2127894..2127896,2127909..2127914,2127918..2127920) /gene="envZ" /locus_tag="AGROH133_07703" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 2127660..2127662 /gene="envZ" /locus_tag="AGROH133_07703" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(2127741..2127743,2127747..2127749,2127831..2127833, 2127837..2127839) /gene="envZ" /locus_tag="AGROH133_07703" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2128063..2128404) /gene="csaA" /locus_tag="AGROH133_07706" /db_xref="GeneID:10267908" CDS complement(2128063..2128404) /gene="csaA" /locus_tag="AGROH133_07706" /EC_number="6.1.1.10" /note="export-related chaperone CsaA; EMAP domain" /codon_start=1 /transl_table=11 /product="chaperone methionine-tRNA ligase protein" /protein_id="YP_004279430.1" /db_xref="GI:325293566" /db_xref="GeneID:10267908" /translation="MSSEISYADFEKVDIRVGTIVEAEPFPEARKPAIKVKIDFGPEI GIKKSSAQITVHYTPESLIGRQVLGVVNFPPRQIGPFRSEVLTLGFADGNGDIVLAGV ERPVPNGEKMC" misc_feature complement(2128069..2128392) /gene="csaA" /locus_tag="AGROH133_07706" /note="tRNA-binding-domain-containing CsaA-like proteins. CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain; Region: tRNA_bind_CsaA; cd02798" /db_xref="CDD:48400" misc_feature complement(order(2128069..2128074,2128087..2128089, 2128093..2128098,2128102..2128110,2128114..2128116, 2128132..2128143,2128186..2128191,2128210..2128212, 2128234..2128239,2128354..2128356,2128366..2128374, 2128378..2128389)) /gene="csaA" /locus_tag="AGROH133_07706" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48400" misc_feature complement(order(2128147..2128149,2128156..2128158, 2128177..2128179,2128189..2128191,2128267..2128269, 2128309..2128311)) /gene="csaA" /locus_tag="AGROH133_07706" /note="putative tRNA-binding site [nucleotide binding]; other site" /db_xref="CDD:48400" gene complement(2128432..2129250) /gene="proC" /locus_tag="AGROH133_07707" /db_xref="GeneID:10267909" CDS complement(2128432..2129250) /gene="proC" /locus_tag="AGROH133_07707" /EC_number="1.5.1.2" /note="catalyzes the formation of L-proline from pyrroline-5-carboxylate" /codon_start=1 /transl_table=11 /product="Pyrroline-5-carboxylate reductase" /protein_id="YP_004279431.1" /db_xref="GI:325293567" /db_xref="GeneID:10267909" /translation="MVYRASGPLVLVGAGNMGGALLSGWLKKGVPGSQVIVIDPRPSD AMRTTIAEAGATHSESVPDGVKAGILFVAVKPQMMEAVLPSLKPLLGPETVVVSIAAG TTIGTFVSHFGSVAAVRAMPNTPAMVGRGVTGAYANELVTPALKAVVDGLLKVSGPVE WVETESDIDAVTAVSGSGPAYVFYLVECMAEAGRKAGLPADIAMRLARETVAGAGELL HQSSDEAARLRQNVTSPGGTTAAALSVLMAEDGMQPLFDKAIAAAKNRAEELAG" misc_feature complement(2128438..2129226) /gene="proC" /locus_tag="AGROH133_07707" /note="pyrroline-5-carboxylate reductase; Reviewed; Region: PRK11880" /db_xref="CDD:183357" misc_feature complement(2128435..2129217) /gene="proC" /locus_tag="AGROH133_07707" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene complement(2129253..2129753) /locus_tag="AGROH133_07708" /db_xref="GeneID:10267910" CDS complement(2129253..2129753) /locus_tag="AGROH133_07708" /note="Protein of unknown function DUF1790; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279432.1" /db_xref="GI:325293568" /db_xref="GeneID:10267910" /translation="MSLIEFEIERQSNPVDMIEIVAASNDWSFERSGEDEIAMTVAGH WADYHVSFSWMEDFEALHLACAFDIKVPDQRVNEVIRLLSQVNGQVLMGHFDLWRQED VVIFRQSLLLAGGAEPNNQQVEVLLSSALEACEQYYQAFQFVVWSGLDAKSAIEAVMF ETVGEA" misc_feature complement(2129256..2129753) /locus_tag="AGROH133_07708" /note="Family of unknown function (DUF1790); Region: DUF1790; cl02283" /db_xref="CDD:154836" gene complement(2130186..2130449) /locus_tag="AGROH133_07709" /db_xref="GeneID:10267911" CDS complement(2130186..2130449) /locus_tag="AGROH133_07709" /note="Protein of unknown function DUF526; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279433.1" /db_xref="GI:325293569" /db_xref="GeneID:10267911" /translation="MTTTGTNRFLDEFAKLMTDAAGAAQGMRKEAEAALHAQADRWLN SLDVVKREEFDAVREMAIKARDENDALRARIEALEAKLSAAKD" misc_feature complement(2130207..2130437) /locus_tag="AGROH133_07709" /note="Membrane fusogenic activity; Region: BMFP; cl01115" /db_xref="CDD:194039" gene complement(2130470..2130661) /locus_tag="AGROH133_07710" /db_xref="GeneID:10267912" CDS complement(2130470..2130661) /locus_tag="AGROH133_07710" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279434.1" /db_xref="GI:325293570" /db_xref="GeneID:10267912" /translation="MMLSGLFTRGKWRLPQRRSRLFFKGRFAMPKAIASHVDFSILLA RRLSSAYLKGINSRERNAP" gene 2130728..2131570 /gene="lgt" /locus_tag="AGROH133_07711" /db_xref="GeneID:10267913" CDS 2130728..2131570 /gene="lgt" /locus_tag="AGROH133_07711" /EC_number="2.4.99.-" /note="transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; Prolipoprotein diacylglyceryltransferase" /codon_start=1 /transl_table=11 /product="prolipoprotein diacylglyceryl transferase" /protein_id="YP_004279435.1" /db_xref="GI:325293571" /db_xref="GeneID:10267913" /translation="MLAAPTQLAIMPFPNIDPVALSLGPLAIHWYGIAYVAGIMLGWF YARRLALTPRLWPNDTSPISAQHLDDFILWAAGGIVLGGRIGYILFYDLGAVAANPIR ALEIWNGGMSFHGGLIGTTIAMILFARKNGIPVWSMFDIIAAVAPVGLLFGRIANFIN GELWGRIADVPWAVVFPTGGPFARHPSQLYEAGLEGLVLLVILAVTIYVFRALKTPGI VTGIFVCGYALSRIFVEFFREPDAQIGYLAGNWLTMGMVLSTPMFLLGLWAVLRARRA KIRA" misc_feature 2130749..2131567 /gene="lgt" /locus_tag="AGROH133_07711" /note="Prolipoprotein diacylglyceryl transferase; Region: LGT; cl00478" /db_xref="CDD:193836" gene 2131586..2132686 /locus_tag="AGROH133_07719" /db_xref="GeneID:10267914" CDS 2131586..2132686 /locus_tag="AGROH133_07719" /note="Protein of unknown function DUF185; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279436.1" /db_xref="GI:325293572" /db_xref="GeneID:10267914" /translation="MTTPLAQRIKSLIRLNGPLSVTDFFSLCLADPEHGYYRSREPFG RLGDFITAPEVSQLFGEMLGVFVVHAWQRHGAPADIRLVEIGPGRGTMMSDMLRVIRR IAPPLYETMRVHLVETSPRLCAIQKETLAAHAERLTWHDSFDAVPEGFLLLVANELFD AIPIRQFVKTPQGFRERVVSLGTDGELVFSTGLAGIDPTLLPPGPERQPIGSIFEIAP AREAVMTAICQRLSAYGGTALAIDYGHLVAGYGDTLQAMRNHAFDPPLSHPGQADLTS HVDFESLIRTAEANGVHVNGGIRQGDFLYGLGLKERATALAAKATPDQTLEIAEAVNR LAGEGAGRMGELFKVIAVSSPALHLMPFRAVD" misc_feature 2131589..2132683 /locus_tag="AGROH133_07719" /note="Uncharacterized conserved protein [Function unknown]; Region: COG1565" /db_xref="CDD:31753" misc_feature 2131769..2132473 /locus_tag="AGROH133_07719" /note="Uncharacterized ACR, COG1565; Region: DUF185; pfam02636" /db_xref="CDD:145672" gene 2132847..2133641 /locus_tag="AGROH133_07720" /db_xref="GeneID:10267915" CDS 2132847..2133641 /locus_tag="AGROH133_07720" /note="Uncharacterised ACR, YfiH family COG1496; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279437.1" /db_xref="GI:325293573" /db_xref="GeneID:10267915" /translation="MQNETLPLPIQSPLLAALSENRVRHGFFTRQGGVSEGLYQGLNV GLGSNDEPELVQENRRRVTQWFGLSPERLATVHQVHSSDVLVVDESYDGSRPQADAMV TATPGFVLGVLSADCGPILFADAEAGVVGAAHAGWKGALFGVLENTIETMRKLGASRE RISASLGPSISQANYEVGPEYVARFTDFDPAYAAYFTASDKGGHALFDLKQFTVDRLV NAGVRAENLGLCTYPDEERFYSYRRTTHRAEPDYGRQISAIAILED" misc_feature 2132871..2133635 /locus_tag="AGROH133_07720" /note="Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]; Region: yfiH; COG1496" /db_xref="CDD:31685" misc_feature 2132925..2133629 /locus_tag="AGROH133_07720" /note="Multi-copper polyphenol oxidoreductase laccase; Region: Cu-oxidase_4; cl00650" /db_xref="CDD:186127" gene 2133642..2134793 /gene="pepQ" /locus_tag="AGROH133_07721" /db_xref="GeneID:10267916" CDS 2133642..2134793 /gene="pepQ" /locus_tag="AGROH133_07721" /EC_number="3.-.-.-" /note="Peptidase M24, catalytic core; Xaa-Pro aminopeptidase" /codon_start=1 /transl_table=11 /product="Xaa-Pro dipeptidase" /protein_id="YP_004279438.1" /db_xref="GI:325293574" /db_xref="GeneID:10267916" /translation="MALHFELSEFDARRERLIAKMAEEKLDAILLFAQESMYWLTGYD TFGYCFFQTLVVKSDGSMMLLTRSADMRQARNTSTIENILVWVDRPNADPTLDLKNLL SDLDLLGAKIGVEYDTHGMTGRVARLLDNQLASFCQIIDASYLVSSLRLIKSPAEIAY ARKAGRLADEALDAAMELIKPGADEAAILSAMQGAVLAGGGDYPANEFIIGSGADALL CRYKAGRRRLDDKDQLTLEWAGVSAHYHAAMMRTVVIGEQDFRQKELYSACLQNLTDI EEVLRPGKTFGDVFDVHARVMDERGLTRHRLNSCGYSLGARFSPSWMEHQMFHAGNSQ EIASDMTLFVHMIVMDSDSGTAMTLGQTYLTTEGAPEPLSRHSLDLLTA" misc_feature 2133642..2134784 /gene="pepQ" /locus_tag="AGROH133_07721" /note="Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006" /db_xref="CDD:30356" misc_feature 2133678..2134097 /gene="pepQ" /locus_tag="AGROH133_07721" /note="Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321" /db_xref="CDD:189940" misc_feature 2134113..2134751 /gene="pepQ" /locus_tag="AGROH133_07721" /note="A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate...; Region: APP_MetAP; cd01066" /db_xref="CDD:29969" misc_feature order(2134299..2134301,2134350..2134352,2134383..2134385, 2134575..2134577,2134674..2134676,2134719..2134721) /gene="pepQ" /locus_tag="AGROH133_07721" /note="active site" /db_xref="CDD:29969" gene 2134884..2135660 /locus_tag="AGROH133_07722" /db_xref="GeneID:10267917" CDS 2134884..2135660 /locus_tag="AGROH133_07722" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279439.1" /db_xref="GI:325293575" /db_xref="GeneID:10267917" /translation="MSRTEFTRPFQTFVVSVLVIPALALTLSACNTTEALTPQVNVGH NSSQSTPVTQGDLDQMAAAADRAPAGAPATASSVPAYAPQNSLQAQAQALSNGNEYGE PLGQTQSTGQSAGHSPASTQPPPPQQTAALAPAASGNTIRFLPIIGAPVQAVTPLSRQ LGAEARAKGLTIRASNDNSAENILKGYFSAFADGSKVNIIYVWDVLDANGVRLHRLQG QETVAAKGSDPWAAATDRVMQDIAAKTLNEYSSWKQSQRG" gene 2135881..2136813 /gene="prsA" /locus_tag="AGROH133_07724" /db_xref="GeneID:10267918" CDS 2135881..2136813 /gene="prsA" /locus_tag="AGROH133_07724" /EC_number="2.7.6.1" /note="catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; Phosphoribosylpyrophosphate synthetase" /codon_start=1 /transl_table=11 /product="ribose-phosphate pyrophosphokinase" /protein_id="YP_004279440.1" /db_xref="GI:325293576" /db_xref="GeneID:10267918" /translation="MKVFAGNSNRHLAEAICKYLNVPLGNATVKRFADQEIFVEISEN VRGEDVFLVQSTSFPANDHLMELLIMIDAMRRSSAKRITAVLPYFGYARQDRKAGPRT PISAKLVANLITEAGADRVLTLDLHAGQIQGFFDIPTDNLFAAPILARDIKDHYDTNN VMVVSPDVGGVVRARALSKRLDCLLAIVDKRRDRPGESEVMNVIGDVSGKDCILIDDI IDSGGTLCNAAEALLKKGATSVTAYITHGVLSGGAVARVASSKLRELVITDSIQPTTS VQSAHNIRVISTAGLLGEAINRTAQEQSVSGLFD" misc_feature 2135881..2136810 /gene="prsA" /locus_tag="AGROH133_07724" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" misc_feature 2135881..2136810 /gene="prsA" /locus_tag="AGROH133_07724" /note="Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]; Region: PrsA; COG0462" /db_xref="CDD:30810" gene complement(2137045..2137893) /locus_tag="AGROH133_07725" /db_xref="GeneID:10267919" CDS complement(2137045..2137893) /locus_tag="AGROH133_07725" /note="Phosphatidic acid phosphatase type 2-like; Membrane-associated phospholipid phosphatase" /codon_start=1 /transl_table=11 /product="PA-phosphatase related phosphoesterase" /protein_id="YP_004279441.1" /db_xref="GI:325293577" /db_xref="GeneID:10267919" /translation="MDNDLSHMRITIWVTFATLALVILFATFPSIDLEFSSLFFSPEA RMWAGSLPVPEWFRDTLRELTELAALLAFIVLVGNIRLGAMQRTGWRVWAFLCGPVVL CAGLLVNGVLKANIGRARPFSVSDFGGHQLFTPPFQFSTQCYSNCSFSSGETALIASF FLPLCALVWNRLQWGGRLFMGSTAAGAIILMSGLRIAAGGHFLSDVVMSVLFSALTTL FLYRALAIARHRHLFTGDAITADAISLWRNGIHAVRTRARRWWPKIKAAATRLQRPPD AGTASS" misc_feature complement(2137222..2137812) /locus_tag="AGROH133_07725" /note="PAP2_like_6 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase; Region: PAP2_like_6; cd03396" /db_xref="CDD:48100" misc_feature complement(order(2137279..2137281,2137291..2137293, 2137309..2137311,2137435..2137443,2137534..2137536, 2137555..2137557)) /locus_tag="AGROH133_07725" /note="active site" /db_xref="CDD:48100" gene complement(2137883..2139391) /locus_tag="AGROH133_07732" /db_xref="GeneID:10267920" CDS complement(2137883..2139391) /locus_tag="AGROH133_07732" /EC_number="2.-.-.-" /note="glycosyl transferase, family 39; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family" /codon_start=1 /transl_table=11 /product="glycosyltransferase protein" /protein_id="YP_004279442.1" /db_xref="GI:325293578" /db_xref="GeneID:10267920" /translation="MQNAASMHEAAALPYARANEQRQWMTFALAAIVLVTVLRVLGLA FNRTDLFVDEAQYWLWGREMAFGAYSKPPLIGWIIRAATTLSGGESTFDVRLAAPVIH GIAAAAILALGRMIYDAKLASLAAVIYLTLPAVTLGSLLISTDTPMMLFIVLSMICVR KLAEARAAGVSATLWSIALGLSFGLGLMSKYAMIYFLPCFIAAGWLCVGWRIRWRDAG IAVVVCAAVIAPNLWWNAAHDFMTARHTADNANWHGVKLKIGPALEFFFSQAGVVGPF VFIGMIVATFRAKTAETRALVALSVPIVLLITAQGLMSRALANWAVGAYAAGVLLAVP VLASRRWLTVSSLVLGGIVAIALPLMTIAGTELRLPNGDLAMKRYLGSSELVSTGLSR AREAGADAIVAADRSILAELFYQLRDEKLLMPRALPETGVPSSHYALLYPLKAGEATN PVYLARADSLPGCLNGEAPLSTWVAGPGSFEGKEIGLWRLPPQCIPRVADGQ" misc_feature complement(2137898..2139244) /locus_tag="AGROH133_07732" /note="4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807" /db_xref="CDD:31992" misc_feature complement(2138738..>2139052) /locus_tag="AGROH133_07732" /note="Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT; cl01961" /db_xref="CDD:187915" gene complement(2139366..2139677) /locus_tag="AGROH133_07742" /db_xref="GeneID:10267921" CDS complement(2139366..2139677) /locus_tag="AGROH133_07742" /note="Uncharacterised conserved protein, lipid A biosynthesis N-terminal region; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="Lipid A biosynthesis protein" /protein_id="YP_004279443.1" /db_xref="GI:325293579" /db_xref="GeneID:10267921" /translation="MNAPALWSMLHVNSWKEFLWVCTGFMGQMLFTMRFLVQWISSER ANRSVIPVAFWYFSIVGGLVLLLYAIWRRDPVFILGQASGLFIYARNLWLIHAERRQH A" misc_feature complement(2139369..2139677) /locus_tag="AGROH133_07742" /note="Lipid A Biosynthesis N-terminal domain; Region: LAB_N; cl01627" /db_xref="CDD:154504" gene complement(2139674..2140507) /gene="dpm1" /locus_tag="AGROH133_07746" /db_xref="GeneID:10267922" CDS complement(2139674..2140507) /gene="dpm1" /locus_tag="AGROH133_07746" /EC_number="2.4.1.83" /note="glycosyl transferase, family 2; glycosyltransferases involved in cell wall biogenesis" /codon_start=1 /transl_table=11 /product="dolichol-phosphate mannosyltransferase" /protein_id="YP_004279444.1" /db_xref="GI:325293580" /db_xref="GeneID:10267922" /translation="MQAFRAPALATIDDVCGTPADGYDGAPLRSIPDFAVIVPMHNEE ASVETLVAEIVAACQPVGPFEIIVVDDASSDRTADVALSLAGRYPMLRLVRHDRQGGQ SAAIHSGVQAARAPVVCMLDGDGQNPPDNLPALLAPLLASNAPSRLALVAGQRVGRRD TLAKRLSSRFANGLRARILKDGTRDTGCGLKAFRRDAYLALPYFDHHHRYFPALFNRD GWQVAHVDVTHRARLHGNSHYTNIGRALVGIHDLIGVAWLLRRRKRASWAETFKTETS P" misc_feature complement(2139866..2140402) /gene="dpm1" /locus_tag="AGROH133_07746" /note="DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; Region: DPM_DPG-synthase_like; cd04179" /db_xref="CDD:133022" misc_feature complement(order(2140136..2140138,2140385..2140387, 2140391..2140393)) /gene="dpm1" /locus_tag="AGROH133_07746" /note="Ligand binding site [chemical binding]; other site" /db_xref="CDD:133022" misc_feature complement(order(2140136..2140141,2140295..2140297)) /gene="dpm1" /locus_tag="AGROH133_07746" /note="Putative Catalytic site [active]" /db_xref="CDD:133022" misc_feature complement(2140136..2140144) /gene="dpm1" /locus_tag="AGROH133_07746" /note="DXD motif; other site" /db_xref="CDD:133022" gene 2140704..2142971 /gene="mcpA5" /locus_tag="AGROH133_07747" /db_xref="GeneID:10267923" CDS 2140704..2142971 /gene="mcpA5" /locus_tag="AGROH133_07747" /note="methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004279445.1" /db_xref="GI:325293581" /db_xref="GeneID:10267923" /translation="MPGANPTAVTAKSLSIKAKFAALVTGATLVSCLAVGLLSYEMGK SGLIDASKIRLETVAGNQSKQLDAYTLRVEQSISELSQNAAIAQALETMTTVVPTEKD AIIQAFRREGVSEEERASFNGEGLRLLYAIRHATINAAIASVWRNTRVSDIYVIDKAG LIIYSVTKGKNFLTNVTEPQNSTIKELFDRIEAGKDGVISTTGFSDGGTNDSALIGMP LAVSNWGQLQRKGAVIMRISADRIGAVVTPEETGKSIDDAVLLSAEGKLRAGVLSGGA GVAVSESLAALTGASEAGTVMAKTPPGSIFYAYRPVSVFGQKHLLAIGQQESKVLAAA NDLAFWATLATLAVLAVMTLIGIFVSASLTKPLTGLAGLMERLNGGDHNIEIKAVSRG DEIGTMARALESFRQGILDKQRMETESHRKSEELDEERAQREMEKARSAKELEEAVDA LATGLANLAAGRLDLRIEKPFVPSLDHLRVDFNNSIAGLDATISSIGESANAIRSGSG ELKSASEDLSRRTERQAAALEEAAAALGDMTQAVNVSLSRCDVAVGTTAETMQDAHKS TAVVKEAIVAMERIETSSSKIRQIIDVIDQIAFQTNLLALNAGVEAARAGEAGKGFAV VAQEVRELAQKSAAAARDITTLIATSAGDVESGVALVLKTGESLEQIQKRIQSVNEQI GEIATASREQSGRLGEINASVNELDHVTQQNAAMVEETTAAAFSLASEADGLTEQVGQ FSVGATRNRDQRYAA" misc_feature 2141766..2141936 /gene="mcpA5" /locus_tag="AGROH133_07747" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 2142189..2142929 /gene="mcpA5" /locus_tag="AGROH133_07747" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 2142351..2142935 /gene="mcpA5" /locus_tag="AGROH133_07747" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(2143115..2144632) /gene="aldB" /locus_tag="AGROH133_07750" /db_xref="GeneID:10267924" CDS complement(2143115..2144632) /gene="aldB" /locus_tag="AGROH133_07750" /EC_number="1.2.1.3" /note="Aldehyde dehydrogenase family; NAD-dependent aldehyde dehydrogenases" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="YP_004279446.1" /db_xref="GI:325293582" /db_xref="GeneID:10267924" /translation="MNIQVQHKAGEAPFKLKYGNFIGGKWVEPKSGRYMDNLSPVTGH KICEVPRSDAADIELALDAAHQAREKWGKTSVTERSNILLKIAQRIEDNLDLIARAET WDNGKPLRETTNADIPLTIDHFRYFAGCIRAQEGTIGEIDNDTVAYHFHEPLGVVGQI IPWNFPILMAAWKLAPALAAGNCVVLKPAEQTPASILVVMELIEDLLPPGVLNIVNGT GVEAGKPLAQSKRIAKIAFTGSTPVGKEIMRYAADNVTNITLELGGKSPNIFFADVMN EDDAFLDKALEGFAFFALNQGEVCTCPSRALVHESIYDRFMEKAIKRVQAISQDDPLN PSTMLGAQASQEQFDKIMRYLDIGKKEGAKVLTGGDRKTLTGDLKDGYYIQPTVFEGN NKMRVFQEEIFGPVVSVTTFKTVEEALEIANDTVYGLGAGVWSRDTNIAYRAGRGIEA GRVWTNCYHVYPAGAAFGGYKQSGIGRETHKMMLDHYQQTKNLLVSYSPNKVGFF" misc_feature complement(2143142..2144581) /gene="aldB" /locus_tag="AGROH133_07750" /note="Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like; Region: ALDH_ACDHII-AcoD; cd07116" /db_xref="CDD:143434" misc_feature complement(2143157..2144557) /gene="aldB" /locus_tag="AGROH133_07750" /note="Aldehyde dehydrogenase family; Region: Aldedh; pfam00171" /db_xref="CDD:189433" misc_feature complement(order(2143232..2143234,2143346..2143348, 2143424..2143426,2143430..2143432,2143733..2143735, 2143844..2143852,2143892..2143897,2143904..2143906, 2143913..2143924,2144063..2144068,2144072..2144074, 2144117..2144119,2144141..2144155)) /gene="aldB" /locus_tag="AGROH133_07750" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143434" misc_feature complement(order(2143733..2143735,2143742..2143744, 2143850..2143852,2144141..2144143)) /gene="aldB" /locus_tag="AGROH133_07750" /note="catalytic residues [active]" /db_xref="CDD:143434" gene complement(2144794..2145753) /gene="acoR" /locus_tag="AGROH133_07751" /db_xref="GeneID:10267925" CDS complement(2144794..2145753) /gene="acoR" /locus_tag="AGROH133_07751" /note="Bacterial regulatory protein, Fis family; Transcriptional activator of acetoin/glycerol metabolism" /codon_start=1 /transl_table=11 /product="Acetoin catabolism regulatory protein" /protein_id="YP_004279447.1" /db_xref="GI:325293583" /db_xref="GeneID:10267925" /translation="MPTDIAHADRVYETARQRSAAASSPIIASWRRCMVTHRLAPEEN RKPIFLTDVEFRRARESAAGLIAESTDELDRIFHSVGKSGCCLLLTDAQGVALERRGA AGDDRDFRALGLWSGAVWSEASVGTNGIGTALADERSVVVYRDQHFFTSNTELCCTTA PIRDHTGRVTGALDISTCRDDINEMTFSFVTQAVRDAAQRIEGNLFRRAFPGARIVVV PTGFSPALSLLAVDQDDLVLGATRAARLALKLDDHRIAQGLPAADVLQEQRHDGGSDL EEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKKFDVH" misc_feature complement(<2144797..2145657) /gene="acoR" /locus_tag="AGROH133_07751" /note="Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]; Region: AcoR; COG3284" /db_xref="CDD:33094" misc_feature complement(2144806..2144928) /gene="acoR" /locus_tag="AGROH133_07751" /note="Bacterial regulatory protein, Fis family; Region: HTH_8; cl01091" /db_xref="CDD:186327" gene complement(2145861..2147852) /locus_tag="AGROH133_07753" /db_xref="GeneID:10267926" CDS complement(2145861..2147852) /locus_tag="AGROH133_07753" /note="diguanylate cyclase (GGDEF) domain; c-di-GMP phosphodiesterase class I (EAL domain)" /codon_start=1 /transl_table=11 /product="GGDEF/EAL transmembrane sensory box protein" /protein_id="YP_004279448.1" /db_xref="GI:325293584" /db_xref="GeneID:10267926" /translation="MRLFSRARQARGWQKVNWLFLAGVNGGSAIWTTHFVAMLGYVAA GEVGYDPYLTGLSLLIAIATTTTGFAISAYGGRTALVEAGGATVGLGIAAMHYTGMAA YQIQGMIFWNQTYVIASLVLGAVFGALAVNRIARPVNRFCQYSSVAFLILAIASMHYT GMASMLFEFDPRIVISESLLPPAIMGGGAIAVTLLLLALGLSTYVIDAQSTQQAVARY RHLSLHDPLTGIPNRAAFIEHLNRRTRHLSMGAHTALLSIDLNRFKEINDVHGHAAGD AVLRAIADRASSVLKAGEFLARMGGDEFVAMTHSYYTRADGAEFAQRLIEQISRPVEW NGQTFSVGASVGISVRNTGAIDADTLMAQADVAMYRAKGGTSDTICFYDKSMDEAARE RNALAVAMRSGLANSEFELYYQQQNDTKSGSIVGFEALLRWKHPERGMISPVEFIPIA EQTGFIVELGEWVLREACAQAALWKKSLSIAVNVAPQQLADNDFPEKVEKILRETALA PERLELEITEGSIIADHRHALITIRKLKALGVKIAMDDYGTGYSSLSTLQSFPFDKIK IDRAFIDGLSTNVQSEAIVRSTLILAHSLNIPVLAEGVETKAHIEFLRREGCLQVQGF FFGRPGPLTSIANLVDDTFLSTEDEPEVTTTGQRYFKAV" misc_feature complement(2147298..2147852) /locus_tag="AGROH133_07753" /note="MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms]; Region: COG3300" /db_xref="CDD:33109" misc_feature complement(2147430..2147588) /locus_tag="AGROH133_07753" /note="Bacterial signalling protein N terminal repeat; Region: MHYT; pfam03707" /db_xref="CDD:112517" misc_feature complement(2146737..2147186) /locus_tag="AGROH133_07753" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature complement(order(2146947..2146949,2147076..2147078)) /locus_tag="AGROH133_07753" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(2146944..2146955,2146959..2146961, 2147025..2147027,2147037..2147039,2147049..2147054, 2147061..2147063)) /locus_tag="AGROH133_07753" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(2146884..2146886,2146971..2146973)) /locus_tag="AGROH133_07753" /note="I-site; other site" /db_xref="CDD:143635" misc_feature complement(2145957..2146658) /locus_tag="AGROH133_07753" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene 2148246..2148857 /gene="rplY" /locus_tag="AGROH133_07760" /db_xref="GeneID:10267927" CDS 2148246..2148857 /gene="rplY" /locus_tag="AGROH133_07760" /note="the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; Ribosomal protein L25 (general stress protein Ctc)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L25/general stress protein CTC" /protein_id="YP_004279449.1" /db_xref="GI:325293585" /db_xref="GeneID:10267927" /translation="MSKESYELKAEARERVGKGSSRELRRNGLIPAVIYGDKQAPISI ALSTNEVTKRIHAGGFMTTVAVIDVDGKKIKVLPKDYQLDPVRDFTMHVDFLRVSGNT LVNVEVPVHFENEEKSEIKIGGVLNIVRHTVEFHCPANDIPEFITVDLSGLKIGDSVH ISNVKLPKNISPVIADRDFTIATIVAPAGGVAEEEEEAGEASE" misc_feature 2148261..2148536 /gene="rplY" /locus_tag="AGROH133_07760" /note="Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this...; Region: Ribosomal_L25_TL5_CTC; cd00495" /db_xref="CDD:88604" misc_feature order(2148282..2148284,2148306..2148314,2148318..2148320, 2148348..2148356,2148366..2148368,2148480..2148485, 2148489..2148491,2148519..2148521,2148525..2148527, 2148531..2148533) /gene="rplY" /locus_tag="AGROH133_07760" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:88604" misc_feature order(2148354..2148356,2148432..2148434,2148468..2148470, 2148480..2148482,2148531..2148536) /gene="rplY" /locus_tag="AGROH133_07760" /note="CTC domain interface; other site" /db_xref="CDD:88604" misc_feature order(2148474..2148479,2148486..2148488,2148498..2148500, 2148504..2148509,2148531..2148533) /gene="rplY" /locus_tag="AGROH133_07760" /note="L16 interface [polypeptide binding]; other site" /db_xref="CDD:88604" gene 2149164..2151548 /locus_tag="AGROH133_07761" /db_xref="GeneID:10267928" CDS 2149164..2151548 /locus_tag="AGROH133_07761" /note="diguanylate cyclase (GGDEF) domain; c-di-GMP phosphodiesterase class I (EAL domain)" /codon_start=1 /transl_table=11 /product="GGDEF/EAL transmembrane sensory box protein" /protein_id="YP_004279450.1" /db_xref="GI:325293586" /db_xref="GeneID:10267928" /translation="MAHSVESRFIAIVSGALLTVVAPLFTLLLTLSYHEAIRSQRNHL EILLSTNAQALARPLWDLDDDTINQITGTLVSDPVIRMVEVKDTSGQLDIIQTAGSDI IQDAASTTREVTYKSTNGVVTVGQLTVYYDDIGLLTSLSRTELAFITIFILAILTTVL AAIAGNRFMVIRPLMRLAAAIEATRRVGSRHHVDWRSKDEIGRLAKSFNEMQTQLEKE ELEIKHAHERKTEIYNRTPAMLFSLDRYDRIAAVSDYWVQATGYDRARILGLNFADLI HPDDRSLFLQRKAAQHSPDAAHAGITVRFHCMDGSVMDALILEKALDSGNAHQGTYLC VMTDVTELRQSEKRNRQQAISDHLTGLFNRQGFEAILDVQIRDADRNGSELACLFIDL DRFKAINDNLGHAAGDAVLREFTLKIEPLLTPLDSASRLGGDEFAILLAGDKVEERAQ LFCERICTMLDTPFEIEGNSIRLSASIGMAIYPLHAASASELLQNADMAMYTRKRTGK NGSQIFDSSIMDRAREHAELERDIAQALSDNWFEAYFQPIQDLATGQTAGFEALLRLN HPEKGLLSPATIISLAEENGTIHRIGNVILDQSIANLARLSHLPGMEQSYVAVNFSPL QFEPGLPTRIAGVLHRYGILPKRLIIEITEAVIMKDDPQIRAILNAIHQLGCRIALDD FGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVEIRQRSRMLVEGIAAISHKMNCSV IAEGVETEEQKELLTVIGADYGQGYYFARPQPIERLIAALNADNGADRAAARQA" misc_feature 2149671..2149814 /locus_tag="AGROH133_07761" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cd06225" /db_xref="CDD:100122" misc_feature order(2149671..2149676,2149683..2149688,2149692..2149697, 2149704..2149709,2149713..2149715,2149761..2149766, 2149770..2149775,2149782..2149787,2149791..2149796, 2149803..2149808) /locus_tag="AGROH133_07761" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:100122" misc_feature 2149842..2150201 /locus_tag="AGROH133_07761" /note="PAS domain S-box; Region: sensory_box; TIGR00229" /db_xref="CDD:161776" misc_feature 2149869..2150180 /locus_tag="AGROH133_07761" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:29035" misc_feature order(2149917..2149919,2149929..2149931,2149947..2149949, 2149986..2149997,2150076..2150078,2150091..2150093) /locus_tag="AGROH133_07761" /note="putative active site [active]" /db_xref="CDD:29035" misc_feature order(2149977..2149979,2149989..2149991,2150013..2150015, 2150022..2150027,2150112..2150114,2150118..2150120) /locus_tag="AGROH133_07761" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:29035" misc_feature 2150229..2150699 /locus_tag="AGROH133_07761" /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949" /db_xref="CDD:143635" misc_feature order(2150334..2150336,2150463..2150465) /locus_tag="AGROH133_07761" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(2150349..2150351,2150358..2150363,2150373..2150375, 2150385..2150387,2150451..2150453,2150457..2150468) /locus_tag="AGROH133_07761" /note="active site" /db_xref="CDD:143635" misc_feature order(2150439..2150441,2150526..2150528) /locus_tag="AGROH133_07761" /note="I-site; other site" /db_xref="CDD:143635" misc_feature 2150751..2151488 /locus_tag="AGROH133_07761" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:30163" gene 2151565..2152278 /locus_tag="AGROH133_07764" /db_xref="GeneID:10267929" CDS 2151565..2152278 /locus_tag="AGROH133_07764" /note="Bacterial extracellular solute-binding protein, family 3; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter substrate-binding protein" /protein_id="YP_004279451.1" /db_xref="GI:325293587" /db_xref="GeneID:10267929" /translation="MGLIRFCLIFLALAGPASAAKLFLTTEVYPPYNLQNDDGSVAGV YIDQLRIVLEDTGTDYEVAVMPWARAIALATTKAMHCVFATARTPEREKLFKWVSPIH SDRNILVARQNADINVSSLEDARKYRVGTQRGDYTEVLLGNLGFEHVDVGADFQITLH KLNAGRIDLMPMSESTFKSQPPGKFREVITLARQQLGLACNKSVPDEVIAKLQARLDR LIADGTQQSIFDRYKLVSP" misc_feature 2151628..2152260 /locus_tag="AGROH133_07764" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature 2151637..2152260 /locus_tag="AGROH133_07764" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature order(2151649..2151651,2151763..2151765,2151835..2151837, 2151967..2151969,2152081..2152083) /locus_tag="AGROH133_07764" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature order(2152030..2152032,2152042..2152044,2152060..2152062) /locus_tag="AGROH133_07764" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature 2152138..2152155 /locus_tag="AGROH133_07764" /note="hinge residues; other site" /db_xref="CDD:29040" gene 2152380..2153096 /gene="pth" /locus_tag="AGROH133_07766" /db_xref="GeneID:10267930" CDS 2152380..2153096 /gene="pth" /locus_tag="AGROH133_07766" /EC_number="3.1.1.29" /note="Enables the recycling of peptidyl-tRNAs produced at termination of translation" /codon_start=1 /transl_table=11 /product="Peptidyl-tRNA hydrolase" /protein_id="YP_004279452.1" /db_xref="GI:325293588" /db_xref="GeneID:10267930" /translation="MKIIAGLGNPGAQYAGNRHNIGFMTVDALQRLPSFSPWARKFKA EISEGEIGGEKVLLMKPLTYMNLSGESVGEAMRFFKLAPADIIVIHDELDLLAGRARI KTGGGHGGHNGLKSIDAHCGKEYRRLRLGIGHPGDKERVHGHVLGDFAKTDRVWLDPL LDAIADNAAMLVKSEDSQLMNKLALATGSKPETEKPAKAAKPAAQSHIHQARNNAQPK KLPETGPMAEMLKRMFGKKD" misc_feature 2152386..2152895 /gene="pth" /locus_tag="AGROH133_07766" /note="Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462" /db_xref="CDD:73208" misc_feature order(2152404..2152406,2152434..2152436,2152569..2152574, 2152650..2152652,2152710..2152712) /gene="pth" /locus_tag="AGROH133_07766" /note="putative active site [active]" /db_xref="CDD:73208" misc_feature 2152434..2152436 /gene="pth" /locus_tag="AGROH133_07766" /note="catalytic residue [active]" /db_xref="CDD:73208" gene 2153103..2153555 /locus_tag="AGROH133_07767" /db_xref="GeneID:10267931" CDS 2153103..2153555 /locus_tag="AGROH133_07767" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004279453.1" /db_xref="GI:325293589" /db_xref="GeneID:10267931" /translation="MSSETMSLRKAGPDDLPKLLELYQALNPSDPKLTTQEASTVFAA MLGQPGLTVFFAMEDQEPVATATLLVIPNLTRAARPYAFIENVVTLETRRGRGYGRAV VRHAIETAFAANCYKVMLLTGRQRPEVHAFYESCGFIQNKTGFQIRRD" misc_feature 2153103..2153516 /locus_tag="AGROH133_07767" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(2153567..2153881) /gene="clpS" /locus_tag="AGROH133_07768" /db_xref="GeneID:10267932" CDS complement(2153567..2153881) /gene="clpS" /locus_tag="AGROH133_07768" /note="involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease adaptor" /protein_id="YP_004279454.1" /db_xref="GI:325293590" /db_xref="GeneID:10267932" /translation="MMSDSPVDLKPKPKVKPKLERPKLYKVILLNDDYTPRDFVTLVL KVVFHMGEDTGHRVMMTAHRFGSAVVVVCERDIAETKAKEANDLGKEAGFPLMFTTEP EE" misc_feature complement(2153570..2153824) /gene="clpS" /locus_tag="AGROH133_07768" /note="ATP-dependent Clp protease adaptor protein ClpS; Region: ClpS; cl00933" /db_xref="CDD:186267" gene 2154132..2155235 /locus_tag="AGROH133_07769" /db_xref="GeneID:10267933" CDS 2154132..2155235 /locus_tag="AGROH133_07769" /note="Conserved hypothetical protein CHP00092, Protein of unknown function (DUF933); Predicted GTPase, translation factor" /codon_start=1 /transl_table=11 /product="GTP-dependent nucleic acid-binding protein engD" /protein_id="YP_004279455.1" /db_xref="GI:325293591" /db_xref="GeneID:10267933" /translation="MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGE VAVPDPRMQQLAAIAGSKEIIPTRISFVDIAGLVRGASKGEGLGNKFLANIREVDAVV HVLRCFEDDDITHVEGRINPVGDADTIETELMLADLESLERRVEQTRKRATSKDKESL AQLPVMEAVIALLNDGKPARLLLKTLADEEIEILKGLNLLTSHPVLYVCNVSEADAST GNEHTAAVAEMAKQQGAECVIISAAIEAEVAQLPADEAEEFLSALGLTEAGLDRLIRA GYHLLDLITYFTVGPKETRAWTIVRGTKAPAAAGVIHTDFERGFIRAFTIAYDDYIAY KGEVGAKEAGKGRDEGKEYVVQDGDVIHFRFNT" misc_feature 2154132..2155229 /locus_tag="AGROH133_07769" /note="GTP-binding protein YchF; Reviewed; Region: PRK09601" /db_xref="CDD:181981" misc_feature 2154144..2154974 /locus_tag="AGROH133_07769" /note="YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated...; Region: YchF; cd01900" /db_xref="CDD:133300" misc_feature 2154156..2154179 /locus_tag="AGROH133_07769" /note="G1 box; other site" /db_xref="CDD:133300" misc_feature order(2154165..2154167,2154171..2154182,2154759..2154764, 2154768..2154770,2154852..2154860) /locus_tag="AGROH133_07769" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133300" misc_feature 2154228..2154251 /locus_tag="AGROH133_07769" /note="Switch I region; other site" /db_xref="CDD:133300" misc_feature 2154240..2154242 /locus_tag="AGROH133_07769" /note="G2 box; other site" /db_xref="CDD:133300" misc_feature order(2154345..2154374,2154393..2154422) /locus_tag="AGROH133_07769" /note="Switch II region; other site" /db_xref="CDD:133300" misc_feature 2154348..2154359 /locus_tag="AGROH133_07769" /note="G3 box; other site" /db_xref="CDD:133300" misc_feature 2154759..2154770 /locus_tag="AGROH133_07769" /note="G4 box; other site" /db_xref="CDD:133300" misc_feature 2154852..2154860 /locus_tag="AGROH133_07769" /note="G5 box; other site" /db_xref="CDD:133300" misc_feature 2154978..2155226 /locus_tag="AGROH133_07769" /note="TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the...; Region: TGS_YchF_C; cd04867" /db_xref="CDD:133440" gene 2155557..2156030 /locus_tag="AGROH133_07770" /db_xref="GeneID:10267934" CDS 2155557..2156030 /locus_tag="AGROH133_07770" /EC_number="4.2.1.-" /note="MaoC-like dehydratase; Acyl dehydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase protein" /protein_id="YP_004279456.1" /db_xref="GI:325293592" /db_xref="GeneID:10267934" /translation="MAPVATYAYEDFSVGREFPLGPQSISAAQIIEFASEFDPQPMHL SEEAGRQSILGGLAASGWHTCALLMRMMAESYISDSTSQGSPGIDYVDWKKPVLAGDT LSGKSIVLEQRTSSSRPGIGLVKFRHELYNQRGVLVSHGENTVMFLMRADGGLAA" misc_feature 2155581..2155997 /locus_tag="AGROH133_07770" /note="YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal...; Region: YdeM; cd03454" /db_xref="CDD:48049" misc_feature order(2155656..2155658,2155668..2155670,2155674..2155676, 2155683..2155685,2155728..2155730,2155737..2155742) /locus_tag="AGROH133_07770" /note="putative active site [active]" /db_xref="CDD:48049" misc_feature order(2155668..2155670,2155674..2155676,2155683..2155685, 2155737..2155739) /locus_tag="AGROH133_07770" /note="putative catalytic site [active]" /db_xref="CDD:48049" gene 2156027..2156494 /locus_tag="AGROH133_07771" /db_xref="GeneID:10267935" CDS 2156027..2156494 /locus_tag="AGROH133_07771" /note="MaoC-like dehydratase; Acyl dehydratase" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase protein" /protein_id="YP_004279457.1" /db_xref="GI:325293593" /db_xref="GeneID:10267935" /translation="MRLAELSPIGERVTLDTLHFSAEDIVRFARDFDPQPFHLDAEAA KNSVFGALCASGWHTGAGWMKCFLSHWGKEVKRLKQLGLEPPKLGPSPGFRELKWKKP VFAGDDVTYFVTLLDARPLESRAGVWLNTTFNEGVNQSGETVMTFQSGVLEFE" misc_feature 2156039..2156488 /locus_tag="AGROH133_07771" /note="YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal...; Region: YdeM; cd03454" /db_xref="CDD:48049" misc_feature order(2156111..2156113,2156123..2156125,2156129..2156131, 2156138..2156140,2156183..2156185,2156192..2156197) /locus_tag="AGROH133_07771" /note="putative active site [active]" /db_xref="CDD:48049" misc_feature order(2156123..2156125,2156129..2156131,2156138..2156140, 2156192..2156194) /locus_tag="AGROH133_07771" /note="putative catalytic site [active]" /db_xref="CDD:48049" gene 2156558..2157193 /locus_tag="AGROH133_07772" /db_xref="GeneID:10267936" CDS 2156558..2157193 /locus_tag="AGROH133_07772" /note="methyltransferase type 12; SAM-dependent methyltransferases" /codon_start=1 /transl_table=11 /product="S-adenosyl-L-methionine-dependent methyltransferase" /protein_id="YP_004279458.1" /db_xref="GI:325293594" /db_xref="GeneID:10267936" /translation="MNDILQGYAEAATPDLIARFDGLDCREIYAPVIDLLPVSPARVA DIGSGTGRDAAWFAECGHDVLAIEPVKELREPGKRLHLSHKITWLDDCLPDLMKARRH DPFDLVTLCGVWHHIDDEVRQTAMESLSEMTAEGGLLIMSLRHGPAPEGRRAFPISPA ETTGNAARLGFTLIRQVEVASIQASNRAMGVHWTWIALRKTGQNTGLSQHS" misc_feature 2156681..2156995 /locus_tag="AGROH133_07772" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2156693..2156713,2156759..2156764,2156825..2156833, 2156888..2156890) /locus_tag="AGROH133_07772" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(2157207..2157749) /gene="apt" /locus_tag="AGROH133_07773" /db_xref="GeneID:10267937" CDS complement(2157207..2157749) /gene="apt" /locus_tag="AGROH133_07773" /EC_number="2.4.2.7" /note="catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins" /codon_start=1 /transl_table=11 /product="adenine phosphoribosyltransferase" /protein_id="YP_004279459.1" /db_xref="GI:325293595" /db_xref="GeneID:10267937" /translation="MTVIASELSAAIRSIPDYPKPGIIFRDITTLLGNPRAFRRAVDE LVQPYAGTKIDKIAGMEARGFILGGAVAHQLSAGFVPIRKKGKLPHTTVRVAYSLEYG VDEMEMHVDAVQPGEKVILVDDLIATGGTAEGAVKLLRQMGAEIVSACFVIDLPDLGG RRKLEALGVEVRTLVEFSGH" misc_feature complement(2157213..2157728) /gene="apt" /locus_tag="AGROH133_07773" /note="Phosphoribosyl transferase domain; Region: Pribosyltran; cl00309" /db_xref="CDD:193761" gene complement(2157840..2158100) /locus_tag="AGROH133_07774" /db_xref="GeneID:10267938" CDS complement(2157840..2158100) /locus_tag="AGROH133_07774" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279460.1" /db_xref="GI:325293596" /db_xref="GeneID:10267938" /translation="MEFASDAVVWTGEGGAPMVFRSSDYSSRAFCAVCGSTLGAIDDV PTVALVSGSFDDRNDEALRPLSHSFADVCPVWARIEGMSGQE" misc_feature complement(2157894..>2158094) /locus_tag="AGROH133_07774" /note="Glutathione-dependent formaldehyde-activating enzyme; Region: GFA; cl01553" /db_xref="CDD:186452" gene 2158125..2158256 /locus_tag="AGROH133_07775" /db_xref="GeneID:10267939" CDS 2158125..2158256 /locus_tag="AGROH133_07775" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279461.1" /db_xref="GI:325293597" /db_xref="GeneID:10267939" /translation="MPLADIAGAAVRIAGFTRGLETDGTAQAATAPDFRHFSSSFDT" gene complement(2158312..2159196) /gene="fbcC" /locus_tag="AGROH133_07776" /db_xref="GeneID:10267940" CDS complement(2158312..2159196) /gene="fbcC" /locus_tag="AGROH133_07776" /EC_number="1.10.2.2" /note="Cytochrome C1 family; Cytochrome c1" /codon_start=1 /transl_table=11 /product="ubiquinol-cytochrome c reductase cytochrome c1 subunit" /protein_id="YP_004279462.1" /db_xref="GI:325293598" /db_xref="GeneID:10267940" /translation="MKKLVTSIALIAAIGCSAAAFAAEESHDLATKTEHAIAGGHFPV IKPEEQSWSFAGPFGKYDKGQLQRGLKVYKEVCSACHSMSLVSFRTLGDLGYSEEQVK AFAAEYEVQDGPNADGEMYNRKAVPSDHFPSPFPNHEAAAAANGGAAPPDMSLLAKAR GVERGFPQFVIDMIPIIGGYQEGGPDYIHALLTGYQDAPAGVEVSEGTHFNPYFASAV ALKMAPPISADQVTYDDGAPQTVDQYSKDVSAFLMWAAEPHLEARKRTGFMVMVFLFI FTALIYLTKKSVYANKEH" misc_feature complement(2158324..2159043) /gene="fbcC" /locus_tag="AGROH133_07776" /note="Cytochrome C1 family; Region: Cytochrom_C1; pfam02167" /db_xref="CDD:190231" gene complement(2159219..2160544) /gene="fbcB" /locus_tag="AGROH133_07779" /db_xref="GeneID:10267941" CDS complement(2159219..2160544) /gene="fbcB" /locus_tag="AGROH133_07779" /EC_number="1.10.2.2" /note="Cytochrome b(N-terminal)/b6/petB; Cytochrome b subunit of the bc complex" /codon_start=1 /transl_table=11 /product="ubiquinol-cytochrome c reductase cytochrome b subunit" /protein_id="YP_004279463.1" /db_xref="GI:325293599" /db_xref="GeneID:10267941" /translation="MSGHSSYQPSTGIERWIDSRLPLPRMIYDSFVAYPVPRNLNYAY TFGAMLAVMLIVQILTGVVLAMHYAAETTVAFNSVEKIMRDVNHGWLLRYMHANGASF FFIAVYLHIARGLYYGSYKAPREILWILGCVIYLLMMATGFMGYVLPWGQMSFWGATV ITGFFTAFPGIGEWIQQFLLGGFAVDNPTLNRFFALHYLLPFMIAGVVILHIWALHVT GQTNPTGVEVKSKTDTVPFTPYATLKDALGVSVFLIAYAWFVFYMPNFLGHPDNYIMA DPLKTPAHIVPEWYYLPFYAMLRAVTVNIGPIDSKLGGVLVMFGAIIVLFFLPWLDTS KVRSAVYRPWYKLFFWLFVVNAIILGWLGSRPAEGSGLLGLLFGGDIKGNYVGFSQLG TFYYFGFFLVIMPILGLVETPRRIPNSITEAVLEKNAAKKTAAPAAAQV" misc_feature complement(2159312..2160481) /gene="fbcB" /locus_tag="AGROH133_07779" /note="cytochrome b; Provisional; Region: CYTB; MTH00119" /db_xref="CDD:177180" misc_feature complement(2159882..2160457) /gene="fbcB" /locus_tag="AGROH133_07779" /note="Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: Cytochrome_b_N; cd00284" /db_xref="CDD:29347" misc_feature complement(order(2159885..2159887,2159909..2159911, 2160392..2160394,2160401..2160403,2160452..2160457)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="Qi binding site; other site" /db_xref="CDD:29347" misc_feature complement(order(2159882..2159884,2160038..2160040, 2160062..2160067,2160077..2160097,2160107..2160109, 2160137..2160142,2160149..2160151,2160158..2160163, 2160170..2160175,2160185..2160202,2160221..2160223, 2160230..2160235,2160239..2160244,2160248..2160253, 2160260..2160265,2160272..2160274,2160317..2160319, 2160389..2160391,2160398..2160403,2160410..2160415, 2160431..2160439,2160449..2160454)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="intrachain domain interface; other site" /db_xref="CDD:29347" misc_feature complement(order(2159894..2159899,2160176..2160178, 2160260..2160262,2160269..2160277,2160281..2160295, 2160302..2160307,2160314..2160319,2160344..2160349, 2160356..2160358,2160368..2160370,2160431..2160433, 2160440..2160442,2160446..2160451)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="interchain domain interface [polypeptide binding]; other site" /db_xref="CDD:29347" misc_feature complement(order(2159882..2159887,2159900..2159902, 2159909..2159914,2159921..2159923,2160140..2160145, 2160149..2160154,2160161..2160166,2160206..2160208, 2160212..2160217,2160224..2160226,2160236..2160238, 2160392..2160397,2160401..2160406,2160413..2160415)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="heme bH binding site [chemical binding]; other site" /db_xref="CDD:29347" misc_feature complement(order(2159942..2159944,2159951..2159956, 2160098..2160103,2160107..2160112,2160119..2160124, 2160245..2160247,2160254..2160259,2160266..2160268, 2160308..2160310,2160341..2160343,2160350..2160355, 2160359..2160364,2160371..2160376,2160383..2160385)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="heme bL binding site [chemical binding]; other site" /db_xref="CDD:29347" misc_feature complement(order(2159957..2159959,2159966..2159968, 2160050..2160052,2160062..2160067,2160074..2160076, 2160113..2160118,2160125..2160130,2160137..2160139)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="Qo binding site; other site" /db_xref="CDD:29347" misc_feature complement(2159441..2159863) /gene="fbcB" /locus_tag="AGROH133_07779" /note="Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria...; Region: cytochrome_b_C; cd00290" /db_xref="CDD:29371" misc_feature complement(order(2159519..2159524,2159537..2159542, 2159723..2159728,2159735..2159737,2159753..2159755, 2159759..2159764,2159771..2159776,2159783..2159785, 2159792..2159797,2159804..2159806,2159813..2159818, 2159822..2159830,2159837..2159863)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="interchain domain interface [polypeptide binding]; other site" /db_xref="CDD:29371" misc_feature complement(order(2159549..2159551,2159555..2159563, 2159567..2159572,2159579..2159581,2159609..2159611, 2159675..2159686,2159690..2159692,2159699..2159707, 2159711..2159725,2159729..2159734,2159738..2159740, 2159753..2159755,2159762..2159770,2159774..2159779, 2159789..2159791,2159798..2159803,2159810..2159815, 2159822..2159824,2159834..2159836,2159840..2159848, 2159855..2159857)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="intrachain domain interface; other site" /db_xref="CDD:29371" misc_feature complement(order(2159810..2159812,2159834..2159836)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="Qi binding site; other site" /db_xref="CDD:29371" misc_feature complement(order(2159591..2159593,2159660..2159665, 2159672..2159674,2159681..2159686,2159690..2159692)) /gene="fbcB" /locus_tag="AGROH133_07779" /note="Qo binding site; other site" /db_xref="CDD:29371" gene complement(2160559..2161137) /gene="fbcF" /locus_tag="AGROH133_07789" /db_xref="GeneID:10267942" CDS complement(2160559..2161137) /gene="fbcF" /locus_tag="AGROH133_07789" /EC_number="1.10.2.2" /note="ubiquinol-cytochrome c reductase, iron-sulfur subunit; Rieske Fe-S protein" /codon_start=1 /transl_table=11 /product="ubiquinol-cytochrome c reductase iron-sulfur subunit" /protein_id="YP_004279464.1" /db_xref="GI:325293600" /db_xref="GeneID:10267942" /translation="MSEHVTNHDASGEPTRRDFLYLVTGMTGAVGAAAVAWPFIDQMR PDASTLALASIEVNVAAVEPGMSLTVKWRGKPIFIRNRTEKEIGEANAVALADLKDPV ARNANIAPDAQATDIDRSAGQGKENWIVMIGSCTHLGCVPLGQAGDFGGWFCPCHGSH YDTAGRIRKGPAPQNLAIPTFAFTSDTVIKIG" misc_feature complement(2161000..2161122) /gene="fbcF" /locus_tag="AGROH133_07789" /note="Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; Region: UCR_Fe-S_N; pfam10399" /db_xref="CDD:150981" misc_feature complement(2160562..2161095) /gene="fbcF" /locus_tag="AGROH133_07789" /note="ubiquinol-cytochrome c reductase, iron-sulfur subunit; Region: Rieske_proteo; TIGR01416" /db_xref="CDD:188138" misc_feature complement(2160562..2160978) /gene="fbcF" /locus_tag="AGROH133_07789" /note="Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including...; Region: Rieske_cytochrome_bc1; cd03470" /db_xref="CDD:58540" misc_feature complement(order(2160661..2160663,2160667..2160669, 2160676..2160678,2160724..2160729,2160733..2160735)) /gene="fbcF" /locus_tag="AGROH133_07789" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:58540" gene 2161448..2162380 /locus_tag="AGROH133_07791" /db_xref="GeneID:10267943" CDS 2161448..2162380 /locus_tag="AGROH133_07791" /note="Endonuclease/exonuclease/phosphatase; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279465.1" /db_xref="GI:325293601" /db_xref="GeneID:10267943" /translation="MTAKLSCMVSTVVAAVLFIASLRYVTDFWLLAFVTSFQLHIAFV CILLSCLVFWLTRDAISAFLIIWSLALAIHAVAMLMEFSTSANAAPGARPFRLLSFNV LMDNAANADAIADRILESDADAVYLFEAAALESVLPRLQQTYPHRLGCYAGTPTCDLL ILSKRPLLEGRFHSLSDLRRDRFAIASIEFDGTKLTLAAGHITKPYFDDYHRDELDEV SEILFRVTGPLILAGDFNSASIAPDMRDFLAANDLKKAPWEPATWPTKAGRFGIAIDH IFAREPATLLKTTRLPDSLGSNHFGLMADFMIGK" misc_feature 2161736..2162359 /locus_tag="AGROH133_07791" /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490" /db_xref="CDD:197411" misc_feature order(2161748..2161750,2161832..2161834,2162048..2162050, 2162147..2162149,2162153..2162155,2162270..2162272, 2162339..2162344) /locus_tag="AGROH133_07791" /note="putative catalytic site [active]" /db_xref="CDD:197306" misc_feature order(2161832..2161834,2162339..2162341) /locus_tag="AGROH133_07791" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197306" misc_feature order(2162048..2162050,2162153..2162155,2162342..2162344) /locus_tag="AGROH133_07791" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197306" gene complement(2162394..2164370) /locus_tag="AGROH133_07795" /db_xref="GeneID:10267944" CDS complement(2162394..2164370) /locus_tag="AGROH133_07795" /EC_number="3.6.3.27" /note="ABC transporter, transmembrane region, type 1; ABC-type multidrug transport system, ATPase and permease components" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279466.1" /db_xref="GI:325293602" /db_xref="GeneID:10267944" /translation="MEHSSPFFISRTLPKYNLFPNALRLFPLRESAYIRIMVITRIFE FFENWIKPFARKDDLRPPEKTSGFIWFYISQAKAPFLAMLVLGGLTAAIEAALFWFVG RLVDILSTVKPEEGWSGLLSAHGGELVGMLVLIGIVRFIVTMVTALVDQQIITPGFYN LVRWQSYMHVARQSLTFFQNDFSGRIVTKVWSGGQAAGDLVTSLMESVWFVGIYSVSM LLLIGGLDWRLAVVVLVWVLIFSLLARYFVPRIRSHSKETAEAASMLSGRMVDAYSNI QTLRLFGRDDANDRYMRQGFDIFQNATMTFTRFITGVRASMALLSGVMITSMAALCID LWLSGKISSGAVAFTLALVLRLNFLLGRLMTQFNGIMRNFGTVQNAAELISQPIGLVD APDATMLDVKSPSIRFENVSFHYGRANGVIDNLNLDIKAGEKVGIVGRSGAGKSTLVN LLLRFYDVEKGRILIDGQDIAKVTQESLRAHIGMVTQDTSLLHRSIRDNIMFGRTDAT EAQLLEATRRAKADEFIARLEDQRGRTGFDAHVGERGVKLSGGQRQRIAIARVMLKDA PILVLDEATSALDSEVEAAIQSNLDELMQGKTVLAIAHRLSTIAALDRLIVMDQGRIV EQGSHSDLVSQGRLYSELWARQSGGFLAVEEAAQ" misc_feature complement(2162424..2164181) /locus_tag="AGROH133_07795" /note="ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132" /db_xref="CDD:31327" misc_feature complement(2163387..2164133) /locus_tag="AGROH133_07795" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(2162442..2163155) /locus_tag="AGROH133_07795" /note="MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic...; Region: ABCC_MsbA; cd03251" /db_xref="CDD:73010" misc_feature complement(2163033..2163056) /locus_tag="AGROH133_07795" /note="Walker A/P-loop; other site" /db_xref="CDD:73010" misc_feature complement(order(2162559..2162561,2162652..2162657, 2162910..2162912,2163030..2163038,2163042..2163047)) /locus_tag="AGROH133_07795" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73010" misc_feature complement(2162910..2162921) /locus_tag="AGROH133_07795" /note="Q-loop/lid; other site" /db_xref="CDD:73010" misc_feature complement(2162700..2162729) /locus_tag="AGROH133_07795" /note="ABC transporter signature motif; other site" /db_xref="CDD:73010" misc_feature complement(2162652..2162669) /locus_tag="AGROH133_07795" /note="Walker B; other site" /db_xref="CDD:73010" misc_feature complement(2162634..2162645) /locus_tag="AGROH133_07795" /note="D-loop; other site" /db_xref="CDD:73010" misc_feature complement(2162553..2162573) /locus_tag="AGROH133_07795" /note="H-loop/switch region; other site" /db_xref="CDD:73010" gene complement(2164622..2166472) /locus_tag="AGROH133_07802" /db_xref="GeneID:10267945" CDS complement(2164622..2166472) /locus_tag="AGROH133_07802" /EC_number="3.6.3.27" /note="ABC transporter, transmembrane region, type 1; ABC-type multidrug transport system, ATPase and permease components" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279467.1" /db_xref="GI:325293603" /db_xref="GeneID:10267945" /translation="MFGWFEKRLDPFPSSAPSVPPKKLLPFVWHYVQPAWPWLLLLGL MSMGIAVAEAMLYKFLGSIVDWLSTANRETFFADEGWHLMVMAGLVLFLLPLMGAIHT MTMHQTLAGNFGMIARWKMHRFLLRHSMNFFANEFAGRVSTKVMQTALAIREVALKVI DVFVYAISFVVSMLFMVAAADWRLVIPLLVWLGIYMGILTYFVPKLGRLAQEQADARS MMTGRIVDSYTNISTIKLFSHAGREERYAREGMNVFLGTVHRQMRKISGFNILIDLNN AVVLFSTASLGLYFWMQGSVTAGSVAIAISLAMRVNGMSQWIMWEVTSLFENIGTVYD GMSMMTKPHDIVDAPKAPQLAAPQGAIRYDNVRFHYGKNKGVIDGLTLDIKPGEKVGL VGRSGAGKTTLMNLLLRFYDLEAGKITIDGQDISKVSQDSLRELIGVVTQDTSLLHRS IRDNIAYGHPEATDEQVIAAAKRANAWDFVETLVDMHGRQGLDAQVGERGVKLSGGQR QRIAIARVFLKNAPILVLDEATSALDSEVEAAIQENLFSLMEGKTVIAIAHRLSTLTE MDRLIILDKGQIVESGSHAELAAMGGIYADLWRRQSGGFIADHEAEVAAE" misc_feature complement(2164661..2166409) /locus_tag="AGROH133_07802" /note="ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132" /db_xref="CDD:31327" misc_feature complement(2165546..2166358) /locus_tag="AGROH133_07802" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" misc_feature complement(2164679..2165392) /locus_tag="AGROH133_07802" /note="MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic...; Region: ABCC_MsbA; cd03251" /db_xref="CDD:73010" misc_feature complement(2165270..2165293) /locus_tag="AGROH133_07802" /note="Walker A/P-loop; other site" /db_xref="CDD:73010" misc_feature complement(order(2164796..2164798,2164889..2164894, 2165147..2165149,2165267..2165275,2165279..2165284)) /locus_tag="AGROH133_07802" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73010" misc_feature complement(2165147..2165158) /locus_tag="AGROH133_07802" /note="Q-loop/lid; other site" /db_xref="CDD:73010" misc_feature complement(2164937..2164966) /locus_tag="AGROH133_07802" /note="ABC transporter signature motif; other site" /db_xref="CDD:73010" misc_feature complement(2164889..2164906) /locus_tag="AGROH133_07802" /note="Walker B; other site" /db_xref="CDD:73010" misc_feature complement(2164871..2164882) /locus_tag="AGROH133_07802" /note="D-loop; other site" /db_xref="CDD:73010" misc_feature complement(2164790..2164810) /locus_tag="AGROH133_07802" /note="H-loop/switch region; other site" /db_xref="CDD:73010" gene complement(2166856..2167011) /locus_tag="AGROH133_07808" /db_xref="GeneID:10267946" CDS complement(2166856..2167011) /locus_tag="AGROH133_07808" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279468.1" /db_xref="GI:325293604" /db_xref="GeneID:10267946" /translation="MSERVNFVHLTDLHVGNPQVQDDDLYSDTSATLADTLAQIKALG QAQDAAE" misc_feature complement(<2166865..2166996) /locus_tag="AGROH133_07808" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" gene 2167237..2167710 /locus_tag="AGROH133_07809" /db_xref="GeneID:10267947" CDS 2167237..2167710 /locus_tag="AGROH133_07809" /EC_number="2.1.1.-" /note="tRNA/rRNA methyltransferase, SpoU; Predicted rRNA methylase (SpoU class)" /codon_start=1 /transl_table=11 /product="tRNA/rRNA methyltransferase" /protein_id="YP_004279469.1" /db_xref="GI:325293605" /db_xref="GeneID:10267947" /translation="MSDIRPEIRIALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFD ISDRNLKRAGMDYIAAAALTRHVSWDRFEEWRATTGRRLVLASTKAALPYTKIAYRHD DILLFGRESAGVPDHVHEKAQERIIIPMVEGQRSINVAMSAAMITGEALRQTAWS" misc_feature 2167252..2167707 /locus_tag="AGROH133_07809" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene 2167883..2169535 /locus_tag="AGROH133_07810" /db_xref="GeneID:10267948" CDS 2167883..2169535 /locus_tag="AGROH133_07810" /note="sodium-dependent inorganic phosphate (Pi) transporter; Na+/phosphate symporter" /codon_start=1 /transl_table=11 /product="Na+/Pi-cotransporter" /protein_id="YP_004279470.1" /db_xref="GI:325293606" /db_xref="GeneID:10267948" /translation="MQSTIVIVNLLGAVALLLFGLAQVKDGVTRAFGMKLRSVLATGT QSGPRSFFSGFFATVALQSSTATALTVASFAERDLIKPRMAQVVLLGANVGTAVTAWI VAAGVEWLSPLLILSGIVLKKGSSNARQGGGTAVIGIGLMLLSLHLLSGATEPMRASP ALGVFIGLLDGAWPVALIFSAVLAFVSSSSVAVVVLILSLAATGTLSAGLIIVLILGA NLGGAIPPVIATLSGPASARRITIGNLVVRTIGCLIAMPLASYGATLLQQLPLSPAKL PVDAHLIFNVILAAVAWPFSAVISDLMAKLVPGDPKAEDGPNFLDQQALDTPVVALAN ATREVLSVGDAIERMLIRAENAFKHNDLAPLQEVSLLEKKVDRRQQEVKVYLSQLGRK GLADDEARRSIAIIDYAINLEHIGDIIEKGICEQIRKKVLNSFKFSDDGYEELKTLFD MTIENLRAAQSILVTGDFELARRLMESKVDIRRLEKQSSNRHLERLRDGLTESMQTSS LHLDMLRDLKRINAHIVSVAHPILDESGVLIESRLRYAEPRA" misc_feature 2167883..2169487 /locus_tag="AGROH133_07810" /note="Na+/phosphate symporter [Inorganic ion transport and metabolism]; Region: NptA; COG1283" /db_xref="CDD:31474" misc_feature 2167952..2168302 /locus_tag="AGROH133_07810" /note="Na+/Pi-cotransporter; Region: Na_Pi_cotrans; pfam02690" /db_xref="CDD:190392" misc_feature 2168897..2169163 /locus_tag="AGROH133_07810" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" misc_feature 2169215..2169475 /locus_tag="AGROH133_07810" /note="PhoU domain; Region: PhoU; pfam01895" /db_xref="CDD:190154" gene complement(2169539..2169814) /locus_tag="AGROH133_07819" /db_xref="GeneID:10267949" CDS complement(2169539..2169814) /locus_tag="AGROH133_07819" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279471.1" /db_xref="GI:325293607" /db_xref="GeneID:10267949" /translation="MTKFAGPPPLDGLKRRIANHRKARESDGGDPMRNGMFVRQTFCL DREEARAKAREWFDSFPKAAYWTEVESWRQLEGDRIEFTMRRLPSAD" gene 2169944..2170855 /gene="hemF" /locus_tag="AGROH133_07820" /db_xref="GeneID:10267950" CDS 2169944..2170855 /gene="hemF" /locus_tag="AGROH133_07820" /EC_number="1.3.3.3" /note="catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis" /codon_start=1 /transl_table=11 /product="Coproporphyrinogen III oxidase" /protein_id="YP_004279472.1" /db_xref="GI:325293608" /db_xref="GeneID:10267950" /translation="MERPSLPKGLPEDIEDKKAAAQAWFQHLRDTIVTSFETLEDELS GPLADQEPGRFVQKDWLRDNGAGGGGKMSMMEGRVFEKVGVHTSTVYGEFSPEFRQQI PGAEEDPSFWASGISLIAHPVNPNVPAVHMNTRMVVTTSHWFGGGADLTPVLGRRRTE QDPDTQLFHRGFEITCNRHPVADYPRYKSWCDEYFFLKHRNEPRGTGGIFFDWLHPEE EKGGWDANFAFVQDVGRAFNLVYPKIVRSNFNQSWTEEDRDEQLIRRGRYVEFNLLYD RGTIFGLKTGGNVESILSSLPPVVRWP" misc_feature 2169980..2170852 /gene="hemF" /locus_tag="AGROH133_07820" /note="Coproporphyrinogen III oxidase; Region: Coprogen_oxidas; cl00433" /db_xref="CDD:193817" gene 2170978..2171244 /locus_tag="AGROH133_07821" /db_xref="GeneID:10267951" CDS 2170978..2171244 /locus_tag="AGROH133_07821" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279473.1" /db_xref="GI:325293609" /db_xref="GeneID:10267951" /translation="MITSNSMPISASAEGASHSIDTPDLIDRMAAEMRATGDRELPHS FYVEQVKRTLAGKAVTRADNDEMPRTKIPAAGTSSVFQCWAMPE" gene 2171364..2171549 /locus_tag="AGROH133_07822" /db_xref="GeneID:10267952" CDS 2171364..2171549 /locus_tag="AGROH133_07822" /note="Predicted small metal-binding protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279474.1" /db_xref="GI:325293610" /db_xref="GeneID:10267952" /translation="MRLFECGTLVPGCAWHTRADDDAEVVRRTVEHMRSAHGETIIRE NMIENIKSRIRDEANAA" misc_feature 2171364..2171534 /locus_tag="AGROH133_07822" /note="Protein of unknown function (DUF1059); Region: DUF1059; cl02284" /db_xref="CDD:154837" gene complement(2171576..2172832) /gene="papS" /locus_tag="AGROH133_07823" /db_xref="GeneID:10267953" CDS complement(2171576..2172832) /gene="papS" /locus_tag="AGROH133_07823" /EC_number="2.7.7.21" /EC_number="2.7.7.25" /note="CCA-adding enzyme, Poly A polymerase head domain; tRNA nucleotidyltransferase/poly(A) polymerase" /codon_start=1 /transl_table=11 /product="tRNA nucleotidyltransferase" /protein_id="YP_004279475.1" /db_xref="GI:325293611" /db_xref="GeneID:10267953" /translation="MSSLAGRDWFEKPALKRIFALLNADGGEVRIVGGAVRNALMEQP VVDVDMATTLTPDVVVERAKAAGIKAVPTGIEHGTVTLVIDGEGFEVTTLRRDVETNG RHAQVAFGTDWQIDAERRDLTINALYADEKGEIIDLIDGLPDIETGTVRFIGDAAMRI SEDYLRILRFFRFFAHYGSGRPDADGLRASARAKDRLGTLSAERVWSELKKLLSARDP SRALLWMRQSGVLAEILPETEKWGIDAIHGLVATEQALGWTVDPMLRLAAIVPPDRER LTALAGRLRLSKAEAAYLAHWASAPVIDPEMKETALDRLLYRQGVDGVKTRLKLALAS ARADLSGGEAAMQKVARLSTLLTRANKFHKPGFPLSGADVMAAGVESGPKVGEVLKSL EEKWIDVNFSLDRAALTARLKDMLEN" misc_feature complement(2171594..2172814) /gene="papS" /locus_tag="AGROH133_07823" /note="tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]; Region: PcnB; COG0617" /db_xref="CDD:30962" misc_feature complement(2172395..2172796) /gene="papS" /locus_tag="AGROH133_07823" /note="Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398" /db_xref="CDD:143388" misc_feature complement(order(2172458..2172460,2172467..2172478, 2172548..2172550,2172563..2172565,2172602..2172604, 2172686..2172688,2172692..2172694,2172719..2172724, 2172731..2172736)) /gene="papS" /locus_tag="AGROH133_07823" /note="active site" /db_xref="CDD:143388" misc_feature complement(order(2172458..2172460,2172470..2172478, 2172686..2172688,2172692..2172694,2172722..2172724, 2172731..2172736)) /gene="papS" /locus_tag="AGROH133_07823" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143388" misc_feature complement(order(2172563..2172565,2172686..2172688, 2172692..2172694)) /gene="papS" /locus_tag="AGROH133_07823" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143388" misc_feature complement(2172110..2172274) /gene="papS" /locus_tag="AGROH133_07823" /note="Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627" /db_xref="CDD:193105" gene complement(2172829..2173467) /locus_tag="AGROH133_07824" /db_xref="GeneID:10267954" CDS complement(2172829..2173467) /locus_tag="AGROH133_07824" /EC_number="3.6.1.-" /codon_start=1 /transl_table=11 /product="NUDIX/MutT family protein" /protein_id="YP_004279476.1" /db_xref="GI:325293612" /db_xref="GeneID:10267954" /translation="MTMTTTRLETFTAADFRRRVLEEGEGVAERENGDHLLNPGVVLS GNGIRLKDAAVLVPVIDDGNEARVIFTQRTATLRKHSGQISFPGGGIDAGDRTPEEAA LRETEEEIGLSRSFVETVGRLPDYISGTGFRIKPVLSVVRPGFDLTLNPTEVDEVFEV PLSFLMDPANHGRGSRIFQGKERFFYEMPYGERYIWGITAGIVRTIYERFYS" misc_feature complement(2172856..2173317) /locus_tag="AGROH133_07824" /note="Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative...; Region: CoAse; cd03426" /db_xref="CDD:72884" misc_feature complement(order(2173072..2173074,2173153..2173158, 2173198..2173200,2173219..2173221,2173249..2173251)) /locus_tag="AGROH133_07824" /note="putative active site [active]" /db_xref="CDD:72884" misc_feature complement(order(2173072..2173074,2173156..2173158, 2173198..2173200,2173219..2173221,2173249..2173251)) /locus_tag="AGROH133_07824" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:72884" misc_feature complement(2173132..2173203) /locus_tag="AGROH133_07824" /note="nudix motif; other site" /db_xref="CDD:72884" misc_feature complement(2173153..2173155) /locus_tag="AGROH133_07824" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:72884" gene complement(2173464..2174093) /locus_tag="AGROH133_07825" /db_xref="GeneID:10267955" CDS complement(2173464..2174093) /locus_tag="AGROH133_07825" /note="Protein of unknown function DUF1285; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279477.1" /db_xref="GI:325293613" /db_xref="GeneID:10267955" /translation="MAAETINSASDAAGLAAMISRAAEQTGDAKRGPAPVERWNPPFC GDLDMEIRADGTWFYMGTPIGRAPLVRLFSTVLRKDDDGKTYLVTPVEKVGIRVVDAP FVAVEMKVTAGEKDGGPLLTFRTNVGDVVEAGPEHPLRFTIFGENRELKPYILVRGRL EALVSRAVMYDLVALGEVIDVDGVEMFAVRSGGVVFPVMPANELERLSQ" misc_feature complement(2173467..2174093) /locus_tag="AGROH133_07825" /note="Protein of unknown function (DUF1285); Region: DUF1285; cl01571" /db_xref="CDD:154478" gene 2174236..2175279 /gene="moxR" /locus_tag="AGROH133_07826" /db_xref="GeneID:10267956" CDS 2174236..2175279 /gene="moxR" /locus_tag="AGROH133_07826" /note="ATPase associated with various cellular activities, AAA-3; MoxR-like ATPases" /codon_start=1 /transl_table=11 /product="MoxR family protein" /protein_id="YP_004279478.1" /db_xref="GI:325293614" /db_xref="GeneID:10267956" /translation="MGRRQRYEESDMGVMNTGETLDEKAIVASAEKALSDIAAIRAEV SKVIFGQEKVVQNTLLAILSGGHALLVGVPGLAKTKLVTTLGTVLGLDANRIQFTPDL MPSDILGSEVMDQDENGRRSFRFIKGPVFAQLLMADEINRASPRTQSALLQAMQEYHI TMAGQRYDLPKPFHVLATQNPLEQEGTYPLPEAQLDRFLLQVDVGYPELAAERQILLD TTGTASGEARKVIDAERMMEIQALIRQMPVSDKVVDAILSLVRSARPGHGNKLTDKHV VWGPGPRAGQSLMLTARARALYEGRLAPSLDDVYALAEPVLEHRMALTFAARAEGMSV RDVIAALVEQAKN" misc_feature 2174302..2175276 /gene="moxR" /locus_tag="AGROH133_07826" /note="MoxR-like ATPases [General function prediction only]; Region: COG0714" /db_xref="CDD:31058" misc_feature 2174434..2174835 /gene="moxR" /locus_tag="AGROH133_07826" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" gene 2175391..2176305 /locus_tag="AGROH133_07827" /db_xref="GeneID:10267957" CDS 2175391..2176305 /locus_tag="AGROH133_07827" /note="Protein of unknown function DUF58; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279479.1" /db_xref="GI:325293615" /db_xref="GeneID:10267957" /translation="MASIGQIVDKTPGSEVLARARQRAALVPDCMVEAKRIANTVTAG WHGRRKRGIGENFWQFRPYAEGESLSRIDWRRSARDDHTYVRDREWEAAHTIWLWADM SPSMMFKSTLGSVSKESRALVLMLALAEILARSGERIGCPGIMEPISARNAAERLAAA IMHAPLTTGMPETGMIRGASDIVLIGDFLDDAKNVMERISPLARRGLRGHVVEIADPA EETFPYSGRTEFTDPETGEKLVSGRAETIREDYTRAYLARREALSSSLRRLGWNFVFH RTDHLASEALVAVHMYLSGAPAQGGGNR" misc_feature <2175484..2176272 /locus_tag="AGROH133_07827" /note="Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]; Region: COG1721" /db_xref="CDD:31907" misc_feature 2175550..2175810 /locus_tag="AGROH133_07827" /note="Protein of unknown function DUF58; Region: DUF58; pfam01882" /db_xref="CDD:190149" gene 2176302..2179112 /locus_tag="AGROH133_07828" /db_xref="GeneID:10267958" CDS 2176302..2179112 /locus_tag="AGROH133_07828" /note="Double-transmembrane region, N-terminal" /codon_start=1 /transl_table=11 /product="transmembrane protein" /protein_id="YP_004279480.1" /db_xref="GI:325293616" /db_xref="GeneID:10267958" /translation="MSALPFVFTSPYILFGLLALPAIWWLLRLTPPRPKAEVFPPLKI LATVLKREETPSKSPWWLTLLRIALAAAVIFALADPVVNPRNNSIAGTGPLVLVVDNS WASATDWQRRVDTAQALIGDAERADRPVSISFTADAEHDAVPATTAVALDKLAAAKPK PLAPDRVRTAEAITEALNGTSPGTLAYIADGVATAQDESALKTLASLSAAEFRIVTGD GKSIAAITGATNNADAMSVTLSRLDTASPSRLTVNAQDSQGRILATGTASFAPGEAET TATVEAPFELRNDFARLSIEAVSTAGAVHLLDDGFRRRRVALLAGETGNDFQPLLQPL YYISRALQPFVDLIPQRQADLAQAIPEILQSNPSVIVMADIGRLPQETYEPMQRWLAA GGTLIRFAGPRLAAAPTNDPLVPVTLRQGERALGGALSWAEPQPLADFPNFGAFAGMP KADGVLVKRQVLAEPTPDLAERTWASLADGTPLVTTRNVEAGRIVLFHVSAEASWSDL PISGHFVDMLRRIVQLSKAGGASTSANAPAAALSPFRLLTAEGALSADVGSARPLEMR PGQAPRTGFDNPPGLYGTEDGFVALNLLPAGATLRPLDTSLAGVNTTSEALIGETAKS LRPALFIAAFLMLIADSLIVLFMNGAFARLPKARSATAATVLLAIGAFAAMSPSDARA DDPKPGDEQIFERLDTTHLAYVRTGEDDVDRISEQGLQGLSEFLTWRTTLEPGQPVGL DISKDELSFYPIIYWPVSASAPMPSSAAISRIDAYMRAGGTVLFDTRDQFSSLDTGAT SPNGERLQAILANIDIPPLEPVPEDHVLTRSFYLLTNFPGRYNGSPLWVESRQGAAKT TSGLSSSGDGVTPIMITGNDFAGAWAVDAQGAPVLPTVPPDELQREHAFRSGVNIMMY MLTGNYKADQVHVPALLERLGQ" misc_feature 2176317..2176559 /locus_tag="AGROH133_07828" /note="Aerotolerance regulator N-terminal; Region: BatA; cl06567" /db_xref="CDD:195326" misc_feature 2177226..>2177606 /locus_tag="AGROH133_07828" /note="A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain; Region: A4_beta-galactosidase_middle_domain; cd03143" /db_xref="CDD:153237" gene 2179114..2181201 /locus_tag="AGROH133_07833" /db_xref="GeneID:10267959" CDS 2179114..2181201 /locus_tag="AGROH133_07833" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279481.1" /db_xref="GI:325293617" /db_xref="GeneID:10267959" /translation="MTLTFAPFLPWIVIAVLAVAALLLSFIGLWRGVRGAWLRGLALV ALLAAIANPLLTQEEREPLSTIVPVIVDRSQSQDVQDRPQMTDTALAALKDRLSRFPR IEPRIVEVRDDGESDSPSTQLFSALSSAVSDVSPSRVGGAIFLSDGQIHDIPNALPNA EQALGFRAPLHGLITGKADEFDRRIEIVRAPRFGIVNEEQQLTLRVFDDGRAAAGGGS AEVTVKMNGEEIATLQATPGQPTPFTFKVPRGGNNVMEFSVAELPGEVTAANNRAVHL IEGIRQNLRVLLVSGEPHAGERAWRNLLKSDASVDLVHFTILRPPEKQDGTPINELSL IAFPTRELFVEKIEDFDLIIFDRYQHRGVLPILYYDYIAQYVEKGGALLIAAGPEHAG QDSIAMTPLASVLPAQPTGQVHQSAFYPRLSEAGKKHPVTRGLEGSGDEPPHWGRWFR TVSVEPPQGQTVMLGDGQDPLLVLNRQGEGRVAMLLSDQGWLWARGYEGGGPHVALYR RIAHWLMKEPELEEEALTARANGRTLQITRQTIGDDPGQASVHFPSGKTENMAFNNTE PGLYKIERRMDETGLFEIKNGDFTTLVHVGAVDAPEFKAMISTTETLKPLADATKGSV HRVADNSGRVALPDILPVRGDIRVADEDRMLIRMTDETVLKGVNTLPLFAGFAGLAAL LLAFSALWWREGR" misc_feature 2179966..2180475 /locus_tag="AGROH133_07833" /note="Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020" /db_xref="CDD:193615" gene 2181289..2181702 /locus_tag="AGROH133_07837" /db_xref="GeneID:10267960" CDS 2181289..2181702 /locus_tag="AGROH133_07837" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family; Histone acetyltransferase HPA2 and related acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004279482.1" /db_xref="GI:325293618" /db_xref="GeneID:10267960" /translation="MNFVLSDIADAEAEKAIRDPLVAYNLARFGESDKRELIITIRDD ENTVTGGLVGYTGRGWLYVQLLFIPETLRGQGTGAKLLGMAEEEAKKRGCMGAYIDTM NPDALRLYERCGFTKIGSLAPLSSGQAITWLEKRF" misc_feature 2181430..2181636 /locus_tag="AGROH133_07837" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(2181736..2183049) /locus_tag="AGROH133_07838" /db_xref="GeneID:10267961" CDS complement(2181736..2183049) /locus_tag="AGROH133_07838" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004279483.1" /db_xref="GI:325293619" /db_xref="GeneID:10267961" /translation="MTAITMNDALERAGAGAYQRRLMGIFGLVWAADAMQVLAVGFTA ASIALTFGLTVPQALQTGTAFFFGMLLGAAGFGRLADRYGRRRVLIVTVACDAVFGVL SVFAPNFAILLVLRFLTGAAVGGTLPVDYAMMAEFLPAKNRGRWLVMLEGFWAIGTLI VALAAWGASLAGVVDAWRYIFAVTAFPAVVGLGLRFMVPESPLYLVRRGRSDEAKVIV NRMLVVNGRAPLDAGTGLFQPEVSKGQGIFSPALRQRSIMILAIWFLVSVSYYGVFTW MPAKLAGDGFGFVRGYGFLVLVALAQIPGYALAAYGVEKWGRKPTLIGFCLLSALGCL LFTLATGGAMIATSLLIMSFALLGTWGALYAFTPELYPTESRATGMGAAGAMARLGGL LAPSLLGYAIAQGFGFAIGIFAGLLVLAAIAATMINAETRRVALS" misc_feature complement(<2182453..2182977) /locus_tag="AGROH133_07838" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(2182576..2182578,2182594..2182599, 2182606..2182611,2182645..2182647,2182654..2182659, 2182666..2182671,2182678..2182683,2182819..2182824, 2182828..2182833,2182843..2182845,2182852..2182857, 2182864..2182866,2182915..2182920,2182924..2182932, 2182939..2182941)) /locus_tag="AGROH133_07838" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature complement(2181931..>2182809) /locus_tag="AGROH133_07838" /note="cation transport protein; Region: 2A0119; TIGR00898" /db_xref="CDD:162097" gene complement(2183292..2183861) /locus_tag="AGROH133_07851" /db_xref="GeneID:10267962" CDS complement(2183292..2183861) /locus_tag="AGROH133_07851" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase; Acetyltransferases" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004279484.1" /db_xref="GI:325293620" /db_xref="GeneID:10267962" /translation="MSKHDLVYLTEDASHDAIIEIINEEAFGPGRHTRAAARIREQGP HDRSLSFVCADDGETIASVRMTPVLAGGVKGHMLGPLAVRPSHKNMGIGRELVRIAIA AARRKGSEAVILIGDPPYYMPLGFEKVAYAALDFPGPVDPNRVLVVPVGDDVHQRLKG KIGWRKCEAAMPAAQAEDDGFEEPLRVYG" misc_feature complement(2183403..2183861) /locus_tag="AGROH133_07851" /note="Acetyltransferases [General function prediction only]; Region: RimI; COG0456" /db_xref="CDD:30804" misc_feature complement(2183520..2183714) /locus_tag="AGROH133_07851" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature complement(order(2183580..2183585,2183613..2183621)) /locus_tag="AGROH133_07851" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 2184158..2185150 /locus_tag="AGROH133_07852" /db_xref="GeneID:10267963" CDS 2184158..2185150 /locus_tag="AGROH133_07852" /EC_number="2.5.1.18" /note="Glutathione S-transferase, C-terminal-like; Predicted glutathione S-transferase" /codon_start=1 /transl_table=11 /product="glutathione S-transferase" /protein_id="YP_004279485.1" /db_xref="GI:325293621" /db_xref="GeneID:10267963" /translation="MGMLVEGVWKDVWYDTKETKGHFKRSASQFRNWVTVDGAPGPSG EGGFKAEKDRYHLYVSLACPWAHRTLIFRKLKKLEDLISVSVVDPLMLENGWEFRPEG ERTPGATEDHLFGFSTLWQVYTKADANYSGRVTVPVLWDKERGTIVSNESAEIIRMFN VAFNDLTGSAADYYPEALRADIDALNDVIYDTVNNGVYKAGFATTQDAYQQNAVKVFE TLDMLEDRLEDRRFLFGAEQTEADWRLFTTLVRFDPVYVGHFKCNIRRIHDYPHLTGY LRDLYQTPGVPDTVDIRHIKEHYYRSHLTINPTGIVPVGPELDLTMAHGRETLA" misc_feature 2184158..2185147 /locus_tag="AGROH133_07852" /note="Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: ECM4; COG0435" /db_xref="CDD:30784" misc_feature 2184680..2185105 /locus_tag="AGROH133_07852" /note="GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell...; Region: GST_C_ECM4_like; cd03190" /db_xref="CDD:48117" gene complement(2185168..2185659) /locus_tag="AGROH133_07853" /db_xref="GeneID:10267964" CDS complement(2185168..2185659) /locus_tag="AGROH133_07853" /note="NUDIX hydrolase, core; ADP-ribose pyrophosphatase" /codon_start=1 /transl_table=11 /product="hydrolase protein, MutT/nudix family" /protein_id="YP_004279486.1" /db_xref="GI:325293622" /db_xref="GeneID:10267964" /translation="MNDERTERQARPFHTRILIRLLHFVFLFTRGATLGVRALCFDDA GRIFLVRHTYLPGWYLPGGGVERGETLLMALNKEIREEGNLEATSTPELVHVYLNLEG SNRDHVALYRLQVTQTTPKKPDHEITESGFFDLSDLPENVTPATRRRLAELSGKAAIA DYW" misc_feature complement(2185201..2185560) /locus_tag="AGROH133_07853" /note="Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_21; cd04680" /db_xref="CDD:72915" misc_feature complement(2185405..2185473) /locus_tag="AGROH133_07853" /note="nudix motif; other site" /db_xref="CDD:72915" gene 2185726..2186676 /locus_tag="AGROH133_07855" /db_xref="GeneID:10267965" CDS 2185726..2186676 /locus_tag="AGROH133_07855" /note="Calcineurin-like phosphoesterase; Predicted phosphohydrolases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279487.1" /db_xref="GI:325293623" /db_xref="GeneID:10267965" /translation="MFKLAHISDVHLGPLPKLTFRELASKRITGFVNWHRNRRKHLFT DTLEKLLDDLEAKSPDHLAITGDLVNLATGIEIRAAADWLEEVGDPEKISVVPGNHDA YVSGAHDKAMRAWYPYVRGDGDPAEWDDDRKIFPYMRVRGPVALIGCSTSIATPPFSA TGYFGNRQARATAELLKKAGEQGLFRVVMIHHPPIRGAAAAHKRMFGIRRFAAALGVG GAELVLHGHTHLNTVYWLNTHHGQEHIPVVGIASASQGPGGEKPRAAYNLFHISGGPG TWNVACERHSLNDTGTGIGLEDIRVFYENGRPLGFSRLGR" misc_feature 2185729..2186649 /locus_tag="AGROH133_07855" /note="Predicted phosphohydrolases [General function prediction only]; Region: Icc; COG1409" /db_xref="CDD:31599" misc_feature 2185735..>2186031 /locus_tag="AGROH133_07855" /note="Bacillus subtilis YydB and related proteins, metallophosphatase domain; Region: MPP_YydB; cd07400" /db_xref="CDD:163643" misc_feature order(2185750..2185752,2185756..2185758,2185924..2185926, 2186020..2186025) /locus_tag="AGROH133_07855" /note="putative active site [active]" /db_xref="CDD:163643" misc_feature order(2185750..2185752,2185756..2185758,2185924..2185926, 2186020..2186022) /locus_tag="AGROH133_07855" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:163643" gene complement(2186886..2188595) /gene="leuA" /locus_tag="AGROH133_07856" /db_xref="GeneID:10267966" CDS complement(2186886..2188595) /gene="leuA" /locus_tag="AGROH133_07856" /EC_number="2.3.3.13" /note="Yeast 2-isopropylmalate synthase; Isopropylmalate/homocitrate/citramalatesynthases" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="YP_004279488.1" /db_xref="GI:325293624" /db_xref="GeneID:10267966" /translation="MDGKITNISKGMSDANVKYRPYPTINIPDRTWPGKTITKAPIWC SVDLRDGNQSLVNPMGHDRKARMFKLLLEMGFKEIEIGFPSASQTDFDFARWCVEQGN VPEDVSLQVLVQCRPELITRTFEALEGANKPIIHFYNSTSELQRRVVFGKDVHGIKQI AVDAAKMITDMAAKAGGGFRFEYSPESFTGTELEVALEICNAVVEVVKPTADNKLILN LPSTVEMATPNIYADQIEWMCRNIDNRENVIISLHPHNDRGTGIAATELALMAGADRV EGTLFGNGERTGNVDVVTLALNMYTQGVDPELDCRDIERIKAVYEYSNEMTIPERHPY VGELVYTAFSGSHQDAINKGMKAIKVANHPVWEVPYLPIDPKDVGRSYEAIIRINSQS GKGGIAYILQQDYGINLPRNLQVEFREDIQRITDEEGVELPAKRIYERFMERYVTQPN ARIKFVDHHTYPAGDFKGVRIVAAEITDNGEVKRIEGKGTGPIDGFINALSVYLGIDL SVNDYSEHSLQHGSNASAIAYVEMEHPGGKLFGAGVNTNIVGASLEAIVSAANRVLEE RVK" misc_feature complement(2186901..2188562) /gene="leuA" /locus_tag="AGROH133_07856" /note="2-isopropylmalate synthase; Validated; Region: PRK03739" /db_xref="CDD:179640" misc_feature complement(2187630..2188478) /gene="leuA" /locus_tag="AGROH133_07856" /note="Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain; Region: DRE_TIM_LeuA; cd07942" /db_xref="CDD:163680" misc_feature complement(order(2187831..2187833,2187837..2187839, 2187930..2187932,2187936..2187938,2188038..2188040, 2188356..2188358,2188446..2188451)) /gene="leuA" /locus_tag="AGROH133_07856" /note="active site" /db_xref="CDD:163680" misc_feature complement(order(2188356..2188358,2188446..2188451)) /gene="leuA" /locus_tag="AGROH133_07856" /note="catalytic residues [active]" /db_xref="CDD:163680" misc_feature complement(order(2187831..2187833,2187837..2187839, 2188446..2188448)) /gene="leuA" /locus_tag="AGROH133_07856" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163680" misc_feature complement(2186904..2187245) /gene="leuA" /locus_tag="AGROH133_07856" /note="LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; pfam08502" /db_xref="CDD:149524" gene complement(2188895..2190085) /locus_tag="AGROH133_07857" /db_xref="GeneID:10267967" CDS complement(2188895..2190085) /locus_tag="AGROH133_07857" /note="Uncharacterized protein involved in benzoate metabolism" /codon_start=1 /transl_table=11 /product="Benzoate membrane transport protein" /protein_id="YP_004279489.1" /db_xref="GI:325293625" /db_xref="GeneID:10267967" /translation="MLMKDLSVQSLFMGCLTAFVGFASSFAVVLQGLKAVGATDFEAA SGLMALSVAMGVCAIALSVATRMPVSIAWSTPGAALLATTGVIEGGFPAAVGGFIICA ILIIIAGLFRPLGNAVASIPAPLANAMLSGVIIGLCFAPIKAIGFNPALGLPIILAWI VVGAFKRLFAVPAALAAFVLVMIFGVDIPAGALDRVAQSLTPPMEWVTPVFSLHAVIS IALPLFIVTMASQNIPGIAVLKVNHYDPQPGPLFAATGFFSLLSAPFGGHAVNLAAIT AAMCAGEDAHPDPKRRYWAAIIGGVGYIVFGLLAGAVTAFVALAPPVLIQAVAGLALV GAFSGSAVAAFKDPETREAAAITFLITASGLSFAGVSGAFWGLIGGGLMMALTGFVKG LKRQ" misc_feature complement(2188928..2190073) /locus_tag="AGROH133_07857" /note="Sulfate transporter family; Region: Sulfate_transp; cl00967" /db_xref="CDD:193990" misc_feature complement(2188901..2190070) /locus_tag="AGROH133_07857" /note="Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]; Region: BenE; COG3135" /db_xref="CDD:32949" gene complement(2190171..2190815) /locus_tag="AGROH133_07870" /db_xref="GeneID:10267968" CDS complement(2190171..2190815) /locus_tag="AGROH133_07870" /note="Protein of unknown function DUF1109; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279490.1" /db_xref="GI:325293626" /db_xref="GeneID:10267968" /translation="MRKTEDIIEQLASGLKPVPALSLERRLALAVLPGLGVSLLLMLA ILGPRVDMHDALTELGFWIKSAYNALLALTAFFAVGRLTRPEGNSGCLFIWLALIFVV MAAIALVQLGFAFPDNYRTLVLGSSALHCPFLIVAFALPVFLANFSVLKRSAPADPAL AGFVAGIAAGAAGAWVYSWFCTENGMAFVLIWYSLGIFITGLIGAFAGSRFLRW" misc_feature complement(2190174..2190812) /locus_tag="AGROH133_07870" /note="Protein of unknown function (DUF1109); Region: DUF1109; cl02071" /db_xref="CDD:154732" gene complement(2190812..2191465) /gene="sigD" /locus_tag="AGROH133_07877" /db_xref="GeneID:10267969" CDS complement(2190812..2191465) /gene="sigD" /locus_tag="AGROH133_07877" /note="RNA polymerase sigma factor, sigma-70 family; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog" /codon_start=1 /transl_table=11 /product="ECF family RNA polymerase sigma factor" /protein_id="YP_004279491.1" /db_xref="GI:325293627" /db_xref="GeneID:10267969" /translation="MSLHAHAFVTSYSGEILFTPLCNNIPPIANNPIVTMTGSLSEET LKMLMLRSLDGDEGAYRHLLHALRRLLTAYFDRRMRAASRGDVEDLVQETLLSLHAKR ETYDRARPFTAWFFSIARYKLIDHYRGRGARQLSEVELDETLEAGSSVDQVTARMDVE RLLDELPQRQRDLIRRVKLEGQSIAEAAQKSGQTELAARVGIHRTLKMLAAKLRGET" misc_feature complement(2190815..2191351) /gene="sigD" /locus_tag="AGROH133_07877" /note="RNA polymerase sigma factor; Provisional; Region: PRK12536" /db_xref="CDD:183578" misc_feature complement(2191067..>2191219) /gene="sigD" /locus_tag="AGROH133_07877" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature complement(2190839..2191000) /gene="sigD" /locus_tag="AGROH133_07877" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cl01055" /db_xref="CDD:197420" gene 2191546..2191734 /locus_tag="AGROH133_07878" /db_xref="GeneID:10267970" CDS 2191546..2191734 /locus_tag="AGROH133_07878" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279492.1" /db_xref="GI:325293628" /db_xref="GeneID:10267970" /translation="MTRIFTTIATASMLSVLSFAGIAHADGMKTDMTKMHNDTMKTQT MKKGDMSMASKKGLHAQG" gene complement(2191912..2192517) /gene="clpP" /locus_tag="AGROH133_07881" /db_xref="GeneID:10267971" CDS complement(2191912..2192517) /gene="clpP" /locus_tag="AGROH133_07881" /EC_number="3.4.21.92" /note="hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; Protease subunit of ATP-dependent Clp proteases" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease proteolytic subunit" /protein_id="YP_004279493.1" /db_xref="GI:325293629" /db_xref="GeneID:10267971" /translation="MNYAGEPLMNEDEDDKSKELPIGKETEANLFKSRSIFIYGGITQ ELAQKVCTQLVALAAASDDDIRVYVNSPGGHVESGDSIHDMIKFIKPKVYIIGTGWVA SAGALIYVSVPKERRLCLPNTRFLLHQPSGGTRGMASDIEIQAREIIKMNQRLIKIFA KATGQSEEKIAKDIDRDYWLGAEEAKGYGLVGKIVESQSEV" misc_feature complement(2191936..2192430) /gene="clpP" /locus_tag="AGROH133_07881" /note="Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017" /db_xref="CDD:132928" misc_feature complement(order(2191981..2191983,2191987..2191989, 2192056..2192058,2192062..2192064,2192068..2192070, 2192077..2192079,2192119..2192130,2192146..2192148, 2192152..2192154,2192218..2192220,2192242..2192244, 2192254..2192259,2192266..2192268,2192275..2192277, 2192287..2192289,2192308..2192310,2192350..2192352, 2192359..2192364,2192371..2192376,2192401..2192403, 2192407..2192409)) /gene="clpP" /locus_tag="AGROH133_07881" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132928" misc_feature complement(order(2191987..2191989,2192134..2192136, 2192209..2192211)) /gene="clpP" /locus_tag="AGROH133_07881" /note="active site residues [active]" /db_xref="CDD:132928" gene 2192727..2193317 /gene="ureJ" /locus_tag="AGROH133_07883" /db_xref="GeneID:10267972" CDS 2192727..2193317 /gene="ureJ" /locus_tag="AGROH133_07883" /note="HupE/UreJ protein; Hydrogenase/urease accessory protein" /codon_start=1 /transl_table=11 /product="urease accessory protein" /protein_id="YP_004279494.1" /db_xref="GI:325293630" /db_xref="GeneID:10267972" /translation="MLKRLSLAAAALGATALPAFAHLNPEEHGSFMAGVSHPFFGADH ILAMVAVGLWASQIAMAQNDRKALWIVPAAFVGTMAIGFLMAVYGIGLPFVEPAILAS VIGLGLLVTIAAKLPTAAAAAVVGAFALFHGHAHGGELGSAGALQFGIGFMIATAILH LAGIVLGLRIARFGSAASRTAGALTAIAGLSLAFGG" misc_feature 2192790..2193302 /gene="ureJ" /locus_tag="AGROH133_07883" /note="HupE / UreJ protein; Region: HupE_UreJ; cl01011" /db_xref="CDD:154144" gene 2193418..2194173 /locus_tag="AGROH133_07892" /db_xref="GeneID:10267973" CDS 2193418..2194173 /locus_tag="AGROH133_07892" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279495.1" /db_xref="GI:325293631" /db_xref="GeneID:10267973" /translation="MSPEESQLLKALFDRTKAASATPRDREAEILIADAVRDQPAAPY YLAQAVIVQEKGLEAAAAHIQQLEDRIHALESGNAAPQAAAQGGFLSSIFGTGQQQSP APAPVSPPPQTSWRNDTAGQTAGPWGSPAGRAPDQQPGGLWSQQPAGAGRSGGGFLQG ALGAAAGVTGGMLLANSLSGIFGNHASSLGIGSPFGGGNPLGNNAPVEETVINNYYGD SSSQPDNSNDVQQADYDDSADDDFDQGDDGSFA" misc_feature 2193418..2194101 /locus_tag="AGROH133_07892" /note="Uncharacterized protein conserved in bacteria (DUF2076); Region: DUF2076; cl01353" /db_xref="CDD:194109" gene complement(2194199..2194663) /locus_tag="AGROH133_07893" /db_xref="GeneID:10267974" CDS complement(2194199..2194663) /locus_tag="AGROH133_07893" /EC_number="1.7.1.13" /note="NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; Enzyme related to GTP cyclohydrolase I" /codon_start=1 /transl_table=11 /product="NADPH-dependent 7-cyano-7-deazaguanine reductase" /protein_id="YP_004279496.1" /db_xref="GI:325293632" /db_xref="GeneID:10267974" /translation="MSVTDVSSLSQLGAKVDTPESPEKAILEKVPNGNAGTDYVVRFT APEFTSLCPMTGQPDFAHIVIDYIAGDFLVESKSLKLFLQSFRNHGAFHEDCSVYIAR RLVELLQPKWLRIGAYWYPRGGIPIDVFWQTGPVPEGVWLPDQGVPTYRGRG" misc_feature complement(2194250..2194594) /locus_tag="AGROH133_07893" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:193736" gene complement(2194681..2195583) /locus_tag="AGROH133_07894" /db_xref="GeneID:10267975" CDS complement(2194681..2195583) /locus_tag="AGROH133_07894" /note="Cation efflux family; Predicted Co/Zn/Cd cation transporters" /codon_start=1 /transl_table=11 /product="cation efflux system protein" /protein_id="YP_004279497.1" /db_xref="GI:325293633" /db_xref="GeneID:10267975" /translation="MNTEGNALVRKLAFWGIPLSFGVLGLKLVAWWVTGSVALLSDGL ESTVNVVAAFIAYFVIRYAQKPADDDHQFGHHKAEYISAVVEGVLIVVAALLIVQEAW GGLFNPKLPEAPVLGLAINASAGVINAVWATILIRVGRKYASPALKADGHHIMSDVVT SAGVLVGLVLALLTGYAILDPLLAILVAINILFQGSKVILHSLGGLMDRAVEPEEDEA IKKAIAENSVGIIGVHDLRTRRAGSAAFIDFHVVVPAPMTVREAHDICDRLEDAIREV IPGASLAIHVEPEGEKAHGVKVIV" misc_feature complement(2194693..2195583) /locus_tag="AGROH133_07894" /note="Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053" /db_xref="CDD:30402" misc_feature complement(2194717..2195514) /locus_tag="AGROH133_07894" /note="Cation efflux family; Region: Cation_efflux; cl00316" /db_xref="CDD:193765" gene complement(2195740..2196168) /locus_tag="AGROH133_07901" /db_xref="GeneID:10267976" CDS complement(2195740..2196168) /locus_tag="AGROH133_07901" /note="Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004279498.1" /db_xref="GI:325293634" /db_xref="GeneID:10267976" /translation="MGSDVDARDASAAGGENLPHIGFARIFPILRIFDEAKAREFYVD FLGFKVDWEHRFGENFPLYMQVSRAGMGLHLSGHHGDATPGSNIFATMHGVHAFQKEL AGKDYRFLKPGVEELPWGDVMEVIDPFGNRIRFCEQKSEG" misc_feature complement(2195758..2196087) /locus_tag="AGROH133_07901" /note="Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm; Region: BLMA_like; cd08349" /db_xref="CDD:176697" misc_feature complement(order(2195764..2195766,2195866..2195868, 2195875..2195880,2195893..2195910,2195947..2195949, 2195953..2195961,2195980..2195982,2196082..2196087)) /locus_tag="AGROH133_07901" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176697" misc_feature complement(order(2195767..2195769,2195773..2195781, 2195791..2195793,2195797..2195799,2195815..2195817, 2195902..2195904,2195938..2195943,2195947..2195949, 2195980..2195982,2196013..2196018)) /locus_tag="AGROH133_07901" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:176697" gene complement(2196238..2197344) /gene="braC" /locus_tag="AGROH133_07902" /db_xref="GeneID:10267977" CDS complement(2196238..2197344) /gene="braC" /locus_tag="AGROH133_07902" /note="Extracellular ligand-binding receptor; ABC-type branched-chain amino acid transport systems, periplasmic component" /codon_start=1 /transl_table=11 /product="branched chain amino acid ABC transporter substrate-binding protein" /protein_id="YP_004279499.1" /db_xref="GI:325293635" /db_xref="GeneID:10267977" /translation="MKLKTLTSVTLAASFAFAPLAHAEIVIGLIAPLTGPVAAYGDQV KNGAQTAVNEINKKGGILGEQVVLKLADDGGEPKQGVSAANQLVAEGIHFVVGPVTSG VAIPASDVFAENGVLMITPTATSPGLTNRGLTNVFRTCGRDDQQAEVAAKYVLAKLKD KKVAIIHDKGAYGKGLADAFKTTLNAGGVTEVLYDALTPGEKDLGALTARLKSENVDI VYFGGYHPEAGLLVRQLNDIGAKAAVIGGDGLSNSEFWNIGAKAGEGTIFTNASDALK NADSKAAAEALKAANIPAEAFTLNAYAAVEVLKAGIEKAGSAKDSEAVITALKSGDAF ATAIGKVTYGESGDLSSQAFSLYKWQDGKIVAAE" misc_feature complement(2196256..2197275) /gene="braC" /locus_tag="AGROH133_07902" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(2196268..2197269) /gene="braC" /locus_tag="AGROH133_07902" /note="Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342" /db_xref="CDD:107337" misc_feature complement(order(2196475..2196477,2196562..2196567, 2196574..2196576,2196583..2196585,2196646..2196648, 2197198..2197200,2197207..2197209,2197219..2197221, 2197246..2197248)) /gene="braC" /locus_tag="AGROH133_07902" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:107337" misc_feature complement(order(2196601..2196603,2196673..2196675, 2196829..2196831,2196976..2196981,2197042..2197050)) /gene="braC" /locus_tag="AGROH133_07902" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107337" gene 2197632..2198807 /locus_tag="AGROH133_07905" /db_xref="GeneID:10267978" CDS 2197632..2198807 /locus_tag="AGROH133_07905" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279500.1" /db_xref="GI:325293636" /db_xref="GeneID:10267978" /translation="MITADDEFLTGLPVFRHFEDVADPALYRALPPGWALAIADIIDS TGAIGTGRYKSVNMAGAAVISGISNSLGRHDLPFVFGGDGAAVAVPPNGISLARTALS NVQRWVEDDLDLSMRVALVPVEDIRNNGFDVRVARFQASEDVSYAMFSGGGNSWAEAR MKEGQYALPTVATGGRPDLTGLSCRWNPIPATHGKVVSIIAMPGPSLDMPAFRQLVID LVDLATQDARQGHPVPEDGPKLGFVREGLGLEARAGAAYHDSWGKVRRSLRILGESFL VNFLGMTGLSLGRFNADRYRRSVASNTDFRKFDDGLKMTVDIDAERLEKIRARLELGR LSGTCYFGLHEQDAALMTCIVPSPLSKDHMHFVDGADGGYAAAASRLKQQIQAASSP" misc_feature 2197653..2198780 /locus_tag="AGROH133_07905" /note="Protein of unknown function (DUF3095); Region: DUF3095; pfam11294" /db_xref="CDD:151735" gene complement(2198927..2199250) /gene="nolR" /locus_tag="AGROH133_07906" /db_xref="GeneID:10267979" CDS complement(2198927..2199250) /gene="nolR" /locus_tag="AGROH133_07906" /note="Bacterial regulatory protein, arsR family; Predicted transcriptional regulators" /codon_start=1 /transl_table=11 /product="Nodulation protein nolR" /protein_id="YP_004279501.1" /db_xref="GI:325293637" /db_xref="GeneID:10267979" /translation="MDNQSLSEHSIAAADLLSAMANPKRLMILCTLVDTEVPVGVLAS QVGLSQSALSQHLSKLRAQRLVKTRRDAQTIYYSSNSESVKKILASLEEIYCQVQKSS KTAAA" misc_feature complement(2198969..2199202) /gene="nolR" /locus_tag="AGROH133_07906" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090" /db_xref="CDD:28974" misc_feature complement(order(2198969..2198974,2198978..2198986, 2198990..2198995,2199059..2199061,2199149..2199151, 2199158..2199163,2199170..2199175,2199182..2199184, 2199191..2199193,2199197..2199202)) /gene="nolR" /locus_tag="AGROH133_07906" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(2199020..2199028,2199041..2199049, 2199065..2199070,2199074..2199079,2199086..2199091, 2199095..2199106,2199131..2199139,2199176..2199184, 2199194..2199199)) /gene="nolR" /locus_tag="AGROH133_07906" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:28974" misc_feature complement(order(2198993..2198995,2199128..2199130, 2199137..2199139)) /gene="nolR" /locus_tag="AGROH133_07906" /note="putative Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28974" gene complement(2199773..2200819) /gene="opuA" /locus_tag="AGROH133_07908" /db_xref="GeneID:10267980" CDS complement(2199773..2200819) /gene="opuA" /locus_tag="AGROH133_07908" /EC_number="3.6.3.32" /note="glycine betaine/L-proline transport ATP binding subunit; ABC-type proline/glycine betaine transport system, ATPase component" /codon_start=1 /transl_table=11 /product="proline/glycine/betaine ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279502.1" /db_xref="GI:325293638" /db_xref="GeneID:10267980" /translation="MSDAIIFGNVDIVFGDRPEAALALIDKGSTRDEINEQTGLVLGV ANASLSVNEGEILVLMGLSGSGKSTLLRAVNGLAPVVRGNVSVKTASGFVDPYRATAK ALRDLRMHTVSMVFQQFGLLPWRNVADNVGFGLELSGTPEAERKRMVAEQLELVNLSA WADRKVGELSGGMQQRVGLARAFATGAPILLMDEPFSALDPLIRSRLQDELLEFQSRL KKTILFVSHDLDEAFRIGNRIAMMEGGRIIQCGTPQQIVKQPATQYVADFVQNMNPIS MLTAADVMKPGVDEQNGRLNVAATARPTSPLIDILDALSKHSGAIGVVDNGAIIGTIS ADEIVTGLTRHRKK" misc_feature complement(2199785..2200807) /gene="opuA" /locus_tag="AGROH133_07908" /note="choline ABC transporter, ATP-binding protein; Region: ABC_choXWV_ATP; TIGR03415" /db_xref="CDD:188317" misc_feature complement(2199998..2200795) /gene="opuA" /locus_tag="AGROH133_07908" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2200616..2200639) /gene="opuA" /locus_tag="AGROH133_07908" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(2200139..2200141,2200238..2200243, 2200469..2200471,2200613..2200621,2200625..2200630)) /gene="opuA" /locus_tag="AGROH133_07908" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(2200469..2200480) /gene="opuA" /locus_tag="AGROH133_07908" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(2200286..2200315) /gene="opuA" /locus_tag="AGROH133_07908" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(2200238..2200255) /gene="opuA" /locus_tag="AGROH133_07908" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(2200220..2200231) /gene="opuA" /locus_tag="AGROH133_07908" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(2200133..2200153) /gene="opuA" /locus_tag="AGROH133_07908" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(2200816..2201667) /gene="opuB" /locus_tag="AGROH133_07909" /db_xref="GeneID:10267981" CDS complement(2200816..2201667) /gene="opuB" /locus_tag="AGROH133_07909" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type proline/glycine betaine transport system, permease component" /codon_start=1 /transl_table=11 /product="proline/glycine/betaine ABC transporter transmembrane protein" /protein_id="YP_004279503.1" /db_xref="GI:325293639" /db_xref="GeneID:10267981" /translation="MEWLSAPENRLPVGRYAKEAIDWLTGNLAFFFDWLSFIFQSVIN ALLYVLQAPHPLVIVAIVTALSAWTRRSVGMPVFTALGLLFIINLGYWKATTETLALV LASSAVCMIIGIPLGILAARRKWIYAGMRPVLDLMQTIPTFVYLIPALVLFGLGMVPG LIATVIFAIPAPVRLTRLGIVSTPPALVEAAIAFGATPSQVLRKVELPFAAPQIMAGL TQTIMLSLSMVVISALVGANGLGVPVVRALNTVNIAMGFEAGLCIVILAIVLDRLFRL PGTEHDL" misc_feature complement(2200858..2201376) /gene="opuB" /locus_tag="AGROH133_07909" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(2200858..2200863,2200870..2200875, 2200879..2200884,2200891..2200896,2200924..2200929, 2200966..2200971,2200978..2200989,2201008..2201010, 2201017..2201022,2201062..2201064,2201113..2201115, 2201122..2201127,2201137..2201139,2201143..2201148, 2201155..2201157,2201161..2201163,2201167..2201172, 2201218..2201220,2201224..2201229,2201236..2201265, 2201269..2201280,2201305..2201307,2201320..2201325, 2201332..2201337)) /gene="opuB" /locus_tag="AGROH133_07909" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2200972..2200989,2201218..2201262)) /gene="opuB" /locus_tag="AGROH133_07909" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(2200894..2200896,2200924..2200926, 2200933..2200935,2200969..2200971,2201185..2201187, 2201218..2201220)) /gene="opuB" /locus_tag="AGROH133_07909" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(2201041..2201043,2201053..2201058, 2201074..2201112)) /gene="opuB" /locus_tag="AGROH133_07909" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(2201961..2202914) /gene="opuC" /locus_tag="AGROH133_07918" /db_xref="GeneID:10267982" CDS complement(2201961..2202914) /gene="opuC" /locus_tag="AGROH133_07918" /note="Substrate-binding region of ABC-type glycine betaine transport system; ABC-type proline/glycine betaine transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="proline/glycine/betaine ABC transporter substrate-binding protein" /protein_id="YP_004279504.1" /db_xref="GI:325293640" /db_xref="GeneID:10267982" /translation="MFANRSRCLALAAAISVMTFNAAGAAEPVSCGKVRFSDVGWTDI TATTATATVLLKSLGYETDVKLLSVPVTYTSLKNKDIDVFLGNWMPTMEGDIAPYRDD KSVETLRENLTGAKYTLATNAKGAELGIKDFKDIAAHSGDLGGKIYGIEPGNDGNRLI LDMVAKDTFGLKSFEVVESSEQGMLSQVARAGKSGEPIVFLGWEPHPMNTNFKLTYLT GGDEVFGPNLGGATIYTNVRKGYTEECPNVGVFLKNLEFSLPMENEIMGKILNDGLEG EAAATAWLKANPAAIEPWLANVKTKDGSADALPAVKKALGL" misc_feature complement(2202006..2202902) /gene="opuC" /locus_tag="AGROH133_07918" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(2201970..2202842) /gene="opuC" /locus_tag="AGROH133_07918" /note="choline ABC transporter, periplasmic binding protein; Region: ABC_choline_bnd; TIGR03414" /db_xref="CDD:188316" gene 2203151..2203732 /gene="tdk" /locus_tag="AGROH133_07920" /db_xref="GeneID:10267983" CDS 2203151..2203732 /gene="tdk" /locus_tag="AGROH133_07920" /EC_number="2.7.1.21" /note="catalyzes the formation of thymidine 5'-phosphate from thymidine" /codon_start=1 /transl_table=11 /product="Thymidine kinase" /protein_id="YP_004279505.1" /db_xref="GI:325293641" /db_xref="GeneID:10267983" /translation="MAKLYFNYAAMNAGKSTMLLQASYNYHERGMRTLIFTAAFDDRA GFGRVASRIGLSSDARTFDANTDIFSEVEALHAEAPVACVFIDEANFLSEHHVWQLAG IADRLNIPVMAYGLRTDFQGKLFPASRELLAIADELREIRTICHCGRKATMVARFDNE GNVVKEGAQIDVGGNEKYVSFCRRHWVETVKGD" misc_feature 2203151..2203714 /gene="tdk" /locus_tag="AGROH133_07920" /note="Thymidine kinase; Region: TK; cl00631" /db_xref="CDD:186114" gene 2203848..2204300 /locus_tag="AGROH133_07921" /db_xref="GeneID:10267984" CDS 2203848..2204300 /locus_tag="AGROH133_07921" /note="Copper binding proteins, plastocyanin/azurin family; Plastocyanin" /codon_start=1 /transl_table=11 /product="pseudoazurin" /protein_id="YP_004279506.1" /db_xref="GI:325293642" /db_xref="GeneID:10267984" /translation="MHNKTATVASLAIAAALLAFPALSAEIEVKMLNKGSDGQAMVFE PATVKAAVGDVISFVPVDKGHDAAAVKEMLPEGVADFKGKMNETVKLTVEKDGAYVVK CTPHLGMGMVALVVVGDAAPANLDAIKTGKLPKKARERLDAEIAKLGL" misc_feature 2203938..2204291 /locus_tag="AGROH133_07921" /note="Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412" /db_xref="CDD:196221" gene 2204539..2205696 /locus_tag="AGROH133_07924" /db_xref="GeneID:10267985" CDS 2204539..2205696 /locus_tag="AGROH133_07924" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279507.1" /db_xref="GI:325293643" /db_xref="GeneID:10267985" /translation="MIDRITALIQAAFNAIGKAAGLVVAWLLWPFMAAHGWYRDRNWI IKGPIALVLILLAGFYGYFFWQTQVWTNFDPDYISRYKLAERTVPPGQELPAATPTAA AGATGAAANTSAPVCQRSAIVDAAADLTDFNVNQNAWISSMLLYRLGLFGMDWDSTPF LDNKASFQRGVNQAVRRTAVELVDTLGRVRGTSGINNNLQEARGNMQFSEYSWYFGLD PFGPKTPTPSYYRAAIRSFQAFNGELTACKAVFDTRADNLIQFIDRIAGDIGSTSAIL RERSENYNGGWFDTRADDRFWFAYGQLYGYYGVLSAAGSDFAQVIRERNLTNLWNDTL GQTRAALRIQPAIISNGDESGWIMPSHLATMGFYVLRVRSNLVELRSVLDR" misc_feature 2204575..2205693 /locus_tag="AGROH133_07924" /note="Uncharacterized protein conserved in bacteria (DUF2333); Region: DUF2333; cl11978" /db_xref="CDD:159658" gene complement(2205723..2206439) /gene="atxR" /locus_tag="AGROH133_07927" /db_xref="GeneID:10267986" CDS complement(2205723..2206439) /gene="atxR" /locus_tag="AGROH133_07927" /note="Bacterial regulatory proteins, luxR family; DNA-binding HTH domain-containing proteins" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LuxR family" /protein_id="YP_004279508.1" /db_xref="GI:325293644" /db_xref="GeneID:10267986" /translation="MPKTERQARLCRDLSAAIDRPQWLAALQQVMQAFSYSYVTLLKL PSIRNAYALPIVVESSLPVWVVNAMTRDGELADCPVIKRGASSMMPQYWSLDDKDINC GSLLEVSTLLRGMGITSGLLVPVNGMDGNRHLMNFAGDCDVLSQGSLNELCMIALHAL EAYDRLCRAGSKLPSPLTKRELDVVRWTAQGKTSVEIAELLSISEHTVNTYMNNAIRK LDCVNRAQLVAKTIRLGLIS" misc_feature complement(2205951..2206385) /gene="atxR" /locus_tag="AGROH133_07927" /note="Autoinducer binding domain; Region: Autoind_bind; pfam03472" /db_xref="CDD:190651" misc_feature complement(2205741..2205911) /gene="atxR" /locus_tag="AGROH133_07927" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature complement(order(2205768..2205770,2205801..2205815, 2205819..2205824,2205828..2205833,2205855..2205863, 2205900..2205908)) /gene="atxR" /locus_tag="AGROH133_07927" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature complement(order(2205741..2205746,2205753..2205755, 2205762..2205770,2205861..2205863,2205867..2205869, 2205873..2205875)) /gene="atxR" /locus_tag="AGROH133_07927" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene complement(2206540..2207061) /locus_tag="AGROH133_07929" /db_xref="GeneID:10267987" CDS complement(2206540..2207061) /locus_tag="AGROH133_07929" /note="Protein of unknown function UPF0114; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279509.1" /db_xref="GI:325293645" /db_xref="GeneID:10267987" /translation="MKSLELLVERIILSSRWLLVVFYLGLVAALAVYAFSFVLKFLKV AKNVFTYDESDMILAMLGLIDAALVASLIVMVMISGYENFVSRFDEADDEVSFLGKLD AGSLKIKVASSIVAISSIHLLQIFLNASQYTDSQLMWFTIIHLAFVVSAVMLGFLEKL MAKPKDKPEKPAL" misc_feature complement(2206567..2207061) /locus_tag="AGROH133_07929" /note="Uncharacterized protein family, UPF0114; Region: UPF0114; cl01078" /db_xref="CDD:186322" gene 2207421..2209661 /locus_tag="AGROH133_07933" /db_xref="GeneID:10267988" CDS 2207421..2209661 /locus_tag="AGROH133_07933" /note="TonB-dependent haem/haemoglobin receptor; Outer membrane receptor proteins, mostly Fe transport" /codon_start=1 /transl_table=11 /product="TonB-dependent heme receptor A" /protein_id="YP_004279510.1" /db_xref="GI:325293646" /db_xref="GeneID:10267988" /translation="MSISRTHSALFLCTAMSLLPFAGPAQSQDAASQTNDTTTLEKIV VKGKRVKSANAAADTPLASQTTAEDIRKKDIGSIKDLGNSTEPGVDYVDAKPGRPGGL FIRGLGGARVVTLIDNIPVPYFNNFARQGQATTTLSDTSSSFDFSSLSTVDVVRGADS SRIGSGALGGALVLRTLEPEDLIGEGKDWGGVAKTTYDSEDRSVGGSLAVAKKIENTS VLFQGSYKRGNETDNKGFADIYGTRRTKPNPADTYESNLMFKIRQDLEGGHRIGLTAE RYSLRDRSDMRTLQGVSVSGSTYRIGDYSGYEDTERDRVSLDYEYEAPSTDSLIDAAN LSLYWTRLSKESGAGNRLTNNSLYIREDSMRNSAFGIVGGLESGFELGGVQHTVRFGG NAMTTDFSQALYANTGGVTSSSQSDMPDVSGKSLGLYLDDEIAFGNGFRLTPGLRFDS YDYDPDGSVSSNSGYNTFGLPSGNSGSRFSPKLLATYDVTPELQLFAQWSMAYRAPTI NELYLNFSNISSGYAVVGNSALNPETSNGFEIGANYASGDLTGSLTLFHNKYKNFIEQ YTTSTTLFPGFGGRGNGSLFTYRNRNNVEISGVEARVRKELANGFFAHASLAYAYGKD TDSNEFIRTVAPFKSVLGVGYAQETWGTEFTGIFSSHMRDDKVATTYDAPGYGIFNLT GWWEPEQTKGLRIQAGVYNLFDKQYWNAVGVRDVNPNAVSTVNQPVDFYTEAGRTFKI SLTQKF" misc_feature 2207541..2209658 /locus_tag="AGROH133_07933" /note="TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; Region: TonB-hemlactrns; TIGR01786" /db_xref="CDD:162537" misc_feature 2207616..2209658 /locus_tag="AGROH133_07933" /note="TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347" /db_xref="CDD:73259" misc_feature order(2207616..2207630,2207658..2207675,2207679..2207690, 2207724..2207741,2207760..2207783,2207856..2207888, 2207922..2207948) /locus_tag="AGROH133_07933" /note="N-terminal plug; other site" /db_xref="CDD:73259" misc_feature order(2208450..2208452,2208510..2208512) /locus_tag="AGROH133_07933" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:73259" gene complement(2209717..2210613) /locus_tag="AGROH133_07935" /db_xref="GeneID:10267989" CDS complement(2209717..2210613) /locus_tag="AGROH133_07935" /note="Extensin-like protein C-terminus; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279511.1" /db_xref="GI:325293647" /db_xref="GeneID:10267989" /translation="MLHRLCLLMTSLALISASEPPPQVPVPQPKPGEQQAPATTEKPA DKGAQTPEDTPKPTPKPQPPEEGKSDAEGKGAEDKKKDDKGQNGGETVAPAVEATKPE EKPPEPVKPEDPAKLQACLGALKEIGAEFKELEPIRDEEQGCGIEAPIELSVVLPGIK LEPSGTMRCETALALSRWTKEMMLPAAALALPDKKVTAIANASTYICRNRNSAETGKI SEHAKGNAVDISTIAFDKGDPLVMKPRGEDGTVEGAFQRTITAAACLFFRTVLSPGSD ATHQDHLHLDVLERKGGYLYCR" misc_feature complement(2209720..2210262) /locus_tag="AGROH133_07935" /note="Extensin-like protein C-terminus; Region: Extensin-like_C; pfam06904" /db_xref="CDD:148494" gene 2210895..2213084 /gene="trpE" /locus_tag="AGROH133_07937" /db_xref="GeneID:10267990" CDS 2210895..2213084 /gene="trpE" /locus_tag="AGROH133_07937" /EC_number="4.1.3.27" /note="trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Anthranilate/para-aminobenzoate synthases component I" /codon_start=1 /transl_table=11 /product="anthranilate synthase" /protein_id="YP_004279512.1" /db_xref="GI:325293648" /db_xref="GeneID:10267990" /translation="MVTIIQDDGAETYETKGGIKVSRKRRAAEYASAIDNYIEKLDAH RGAVFSSNYEYPGRYTRWDTAIIDPPLGISCFGRQMWIEAYNGRGEVLLDFITEKLKA TPDLTLGASSVRRLDLTVNEPDRVFTEEERSKIPTVFTALRAIVDLFYSNADSAIGLF GAFGYDLAFQFDAIKLSLARPEDQRDMVLYLPDEILVVDHYSAKAWIDRYDFEKDGVT TDGKSSEIAPDPFKTTDTIPPKGDHRPGEYSELVVKAKESFRRGDLFEVVPGQKFMER CESNPSAISRRLKAINPSPYSFFINLGHQEYLVGASPEMFVRVSGRRIETCPISGTIK RGDDPIADSEQILKLLNSKKDESELTMCSDVDRNDKSRVCEPGSVKVIGRRQIEMYSR LIHTVDHIEGRLRDDMDAFDGFLSHAWAVTVTGAPKLWAMRFIESHEKSPRAWYGGAI GMVGFNGDMNTGLTLRTIRIKDGIAEVRAGATLLNDSNPQEEEAETELKASAMIAAIR DAKATNSAATKRDAAKVGTGVKILLVDHEDSFVHTLANYFRQTGATVSTVRTPVAAEV FDRFQPDLVVLSPGPGSPTDFDCKATIKAARARELPIFGVCLGLQALAEAYGGELRQL AVPMHGKPSRIRVLEPGLVFSGLGKEVTVGRYHSIFADPSTLPRDFIITAESEDGTIM GIEHAKEPVAAVQFHPESIMTLGQDAGMRMIENVVVHLTRKAKTKAA" misc_feature 2210901..2213060 /gene="trpE" /locus_tag="AGROH133_07937" /note="anthranilate synthase; Provisional; Region: PRK13566" /db_xref="CDD:184147" misc_feature <2211216..2211515 /gene="trpE" /locus_tag="AGROH133_07937" /note="Anthranilate synthase component I, N terminal region; Region: Anth_synt_I_N; pfam04715" /db_xref="CDD:191067" misc_feature 2211633..2212391 /gene="trpE" /locus_tag="AGROH133_07937" /note="chorismate binding enzyme; Region: Chorismate_bind; cl10555" /db_xref="CDD:195988" misc_feature 2212485..2213045 /gene="trpE" /locus_tag="AGROH133_07937" /note="Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743" /db_xref="CDD:153214" misc_feature order(2212629..2212634,2212638..2212640,2212713..2212718, 2212725..2212727,2212860..2212871) /gene="trpE" /locus_tag="AGROH133_07937" /note="glutamine binding [chemical binding]; other site" /db_xref="CDD:153214" misc_feature order(2212713..2212715,2212983..2212985,2212989..2212991) /gene="trpE" /locus_tag="AGROH133_07937" /note="catalytic triad [active]" /db_xref="CDD:153214" gene complement(2213161..2214105) /locus_tag="AGROH133_07939" /db_xref="GeneID:10267991" CDS complement(2213161..2214105) /locus_tag="AGROH133_07939" /note="Metal-dependent phosphohydrolase, HD region; HD-GYP domain" /codon_start=1 /transl_table=11 /product="phosphohydrolase protein" /protein_id="YP_004279513.1" /db_xref="GI:325293649" /db_xref="GeneID:10267991" /translation="MLKRISTQQLTVGMFIEAVEGALSNSGFLQRYRFLLRHEELMRQ LKLSGAESIIINTAKGNDIEGRPYSGTVPPRLNNGPETMAAITHAVRSAADAIAETFA VAEAGGCVSLKGMTAAAGKISDAVQSNPAIFIGVTRLKSKDETTFVHSVSVSGLMIHF GNYLGLDKETVDLLGISGLLHDIGKVEIPSSILNKAEGLSATEREIINLHPTFGRDIL SRNEQMPAMVLDVCFNHHERIDGGGYPSGCAGNEISLYARIAAICDVYDAVTSVRPYK KPWTANEALTWMLRREGHFDMQLLKKFALCISTSLPRS" misc_feature complement(<2213905..2214105) /locus_tag="AGROH133_07939" /note="Domain of unknown function (DUF3391); Region: DUF3391; pfam11871" /db_xref="CDD:152307" misc_feature complement(2213251..2213676) /locus_tag="AGROH133_07939" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature complement(order(2213314..2213316,2213560..2213565, 2213659..2213661)) /locus_tag="AGROH133_07939" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature complement(2213560..2213562) /locus_tag="AGROH133_07939" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene 2214382..2216076 /gene="ade" /locus_tag="AGROH133_07940" /db_xref="GeneID:10267992" CDS 2214382..2216076 /gene="ade" /locus_tag="AGROH133_07940" /EC_number="3.5.4.2" /note="Amidohydrolase family" /codon_start=1 /transl_table=11 /product="Adenine deaminase" /protein_id="YP_004279514.1" /db_xref="GI:325293650" /db_xref="GeneID:10267992" /translation="MNSKLETRIDQGTGREPADIVLKGGRFFDLVTGELVASDIAICG DTIVGTCESYKGRREIDISGKIVVPGFIDTHLHIESSLVTPHEFDRCVLPYGVTTAIC DPHEIANVLGAEGLRFFLDSSMETIMDIRVQLSSCVPATHLETSGADLPIEKLLPFRD HPKVIGLAEFMNFPGVIHKDPVCMAKLEAFQGQHIDGHAPLLSGTALNGYLAAGIRTE HECTSAAEALEKIRKGMHILVREGSVSKDLHALMPVITERLSPYLALCTDDRNPLDIA EQGHLDYMIRTAIANGVEPLAIYRAASISAAKAFGLRDRGLIAPGWRADLVVIDALQN CKAGMVFSGGRIVDDALFATRKPVAPVGLDSVKARPVLAAHFGVPVAQGETPVMGVLP GKIITEHRRYTLPTDGNQTTVDLANDIIKVAVIERHGKNGNHANGFVQGFGLKKGAIA STVGHDSHNICVVGVNEDDMALAANRLGEIKGGFVVVEDGKVTGEIALPVAGLMSLEP YETVRDTLHTLRKAAYALGTTLEEPFLQVAFLPLPVIPHLKISDMGMVDVDRFALI" misc_feature 2214382..2216073 /gene="ade" /locus_tag="AGROH133_07940" /note="Adenine deaminase [Nucleotide transport and metabolism]; Region: AdeC; COG1001" /db_xref="CDD:31205" misc_feature 2214436..>2214684 /gene="ade" /locus_tag="AGROH133_07940" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" misc_feature 2214562..>2215422 /gene="ade" /locus_tag="AGROH133_07940" /note="Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen...; Region: AdeC; cd01295" /db_xref="CDD:73254" misc_feature order(2214604..2214606,2214610..2214612,2214973..2214975, 2215036..2215038,2215183..2215185) /gene="ade" /locus_tag="AGROH133_07940" /note="active site" /db_xref="CDD:73254" misc_feature <2215645..2216052 /gene="ade" /locus_tag="AGROH133_07940" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" gene complement(2216330..2216800) /gene="aac" /locus_tag="AGROH133_07941" /db_xref="GeneID:10267993" CDS complement(2216330..2216800) /gene="aac" /locus_tag="AGROH133_07941" /EC_number="2.3.1.82" /note="GCN5-related N-acetyltransferase; Sortase and related acyltransferases" /codon_start=1 /transl_table=11 /product="aminoglycoside 6'-N-acetyltransferase" /protein_id="YP_004279515.1" /db_xref="GI:325293651" /db_xref="GeneID:10267993" /translation="MRGRRLSLQFSIRDAAAFLDDWSLLRHRLWPDASVAEHRAELQN LSDNDAGFIAYDLVGMAIGFADVSLRRDYVNGCDTSPVAFLEGVYVEEEFRGQGVAAA LIAEVTRWAISKGVSELASDADIANVDSHRMHAALGFEETERVVYFRKLLPSHS" misc_feature complement(2216381..2216626) /gene="aac" /locus_tag="AGROH133_07941" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(2216782..2218446) /gene="aglA2" /locus_tag="AGROH133_07942" /db_xref="GeneID:10267994" CDS complement(2216782..2218446) /gene="aglA2" /locus_tag="AGROH133_07942" /EC_number="3.2.1.20" /note="glycoside hydrolase, catalytic core; glycosidases" /codon_start=1 /transl_table=11 /product="alpha-glucosidase" /protein_id="YP_004279516.1" /db_xref="GI:325293652" /db_xref="GeneID:10267994" /translation="MPTTHAPVHKSQAQSDWWKGAVIYQVYPRSFQDTTGDGYGDLAG VTKRLSYIASLGVDAIWLSPFFTSPMADMGYDVSDYCNVDPMFGTLADFDALMAEAHR LGLKVIIDQVISHTSDKHPWFVDSRASRINSKADWYVWANPKPDGTAPTNWLSVFGGP AWEWDGVRKQYYMHSFLASQPDLNFHNPDVQDALLETVRFWLDRGVDGFRLDTVNHYF HDKLLRDNPPLLDDESFGLDASDVNPYGMQDHLYDKTRPENVAFLQRFRALLDEYEGR ATVGEVGDGARSLKTVAAYTSGNDKLNMCYTFDLLGPDFSAKHLRGSVETFGKVVTDG WVCWAFSNHDVVRHLSRFSEGSEEQTRVAKLAICVLASLRGSICLYQGEELGLTEAEL AFEDLRDPYGIRFWPAFKGRDGCRTPMVWETGKPNAGFSSAEKPWLPVPYAHAMQAAD AQERKPDSVLNHYRAVLSFRKTHGALRDGDMDFIKTNLDVLAFTRHKGDEKLLFVFNL TREAVEFPVPKGMEVTDILPMPGFEPLFDAGIVKLEGLDVFCGVVA" misc_feature complement(2216884..2218398) /gene="aglA2" /locus_tag="AGROH133_07942" /note="alpha,alpha-phosphotrehalase; Region: trehalose_treC; TIGR02403" /db_xref="CDD:162843" misc_feature complement(2217304..2218329) /gene="aglA2" /locus_tag="AGROH133_07942" /note="Alpha amylase, catalytic domain; Region: Alpha-amylase; cl07893" /db_xref="CDD:164103" gene 2218602..2219522 /gene="kdgK" /locus_tag="AGROH133_07943" /db_xref="GeneID:10267995" CDS 2218602..2219522 /gene="kdgK" /locus_tag="AGROH133_07943" /EC_number="2.7.1.45" /note="Carbohydrate/purine kinase; Sugar kinases, ribokinase family" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxygluconokinase" /protein_id="YP_004279517.1" /db_xref="GI:325293653" /db_xref="GeneID:10267995" /translation="MGGRFLSIGECMVELSQAGNGLLRKGFAGDTFNTAWYARACLPE DWSVDYFTALGDDPLSQDMLAFIADAGIGTEKIRRIKGGTPGLYLINLKDGERTFSYW RNAAAARQLAADADHLRKTVESADVIYFSGITLAILASPHDVDTFLAELRRAKAAGKP VVFDPNIRPRLWSDKDTMLETITNGARAATLVMPSFDDEASHFGDTSVEATIARYRAL GVANIVVKDGAKGATLDFSGARSHAPAVEVVDVVDTTSAGDSFNGAFLARYVTGSSPH DAAVFAARAAATVIGHHGALISPELLPLVG" misc_feature 2218611..2219489 /gene="kdgK" /locus_tag="AGROH133_07943" /note="2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166" /db_xref="CDD:29350" misc_feature order(2218686..2218691,2218698..2218700,2218863..2218865, 2218902..2218904,2218908..2218910,2218998..2219000, 2219103..2219105,2219367..2219369,2219376..2219378, 2219484..2219486) /gene="kdgK" /locus_tag="AGROH133_07943" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29350" misc_feature order(2219277..2219279,2219292..2219294,2219337..2219339, 2219367..2219375,2219382..2219384,2219448..2219450, 2219460..2219462) /gene="kdgK" /locus_tag="AGROH133_07943" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29350" gene 2219732..2220781 /locus_tag="AGROH133_07944" /db_xref="GeneID:10267996" CDS 2219732..2220781 /locus_tag="AGROH133_07944" /EC_number="2.4.1.-" /note="glycosyl transferase, group 1" /codon_start=1 /transl_table=11 /product="glycosyltransferase" /protein_id="YP_004279518.1" /db_xref="GI:325293654" /db_xref="GeneID:10267996" /translation="MTRITIVTDAWHPQVNGVVRSIENTNTELARLGVDVHMVTPQSF YSIPCPTYPEIRLSVAGYRRVAAEIEKSQPSFVHIATEGPLGFMARRWCVKNRMRFST SYHTRFPEYVAARFPIPESWLYAFVRWFHNGGNTCMVATPSLETELEARGVRNLKRWS RGIDAELFHPRPKTSLPFDLPRPIFMTVGRVAVEKNLPEFLDLELPGSKVVIGDGPAR HELQEKYPDVLFTGIKTGEELAAAYAQADVFVFPSKTDTFGNTILEALASGVPVAAFP VTGPIDILGGNPGAGALNDNLRDACLAALHCSSQEALALSKSYSWEKASRQFLDNVIH AAGKSLPLLSRSRLA" misc_feature 2219738..2220736 /locus_tag="AGROH133_07944" /note="This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule...; Region: GT1_like_2; cd03814" /db_xref="CDD:99985" misc_feature 2219738..2220721 /locus_tag="AGROH133_07944" /note="Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438" /db_xref="CDD:30787" gene complement(2220972..2221580) /locus_tag="AGROH133_07945" /db_xref="GeneID:10267997" CDS complement(2220972..2221580) /locus_tag="AGROH133_07945" /note="Protein of unknown function (DUF2026)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279519.1" /db_xref="GI:325293655" /db_xref="GeneID:10267997" /translation="MLIKQTDYHRIYRVINSLLVNDNADPATACMYFSTFGAFILQQH YKVKAVPKGGLAAYNLGGTVMLFADHRDDGYVTGAGDNFHCWVEAEGWAIDFMAPAFS QSARELSVPPKMFQRPLSAMAASINDLDRSGDFFYRSEPEATARRFADWHKQAMIGDL ASVAANWFRKSPKQMSPSLSVTERNGKARTVPLSGQALVGAW" misc_feature complement(2220975..2221571) /locus_tag="AGROH133_07945" /note="Protein of unknown function (DUF2026); Region: DUF2026; pfam09641" /db_xref="CDD:150341" gene complement(2221788..2223218) /gene="engA" /locus_tag="AGROH133_07946" /db_xref="GeneID:10267998" CDS complement(2221788..2223218) /gene="engA" /locus_tag="AGROH133_07946" /note="EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; Predicted GTPases" /codon_start=1 /transl_table=11 /product="GTP-binding protein engA" /protein_id="YP_004279520.1" /db_xref="GI:325293656" /db_xref="GeneID:10267998" /translation="MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGD AKLVDLRFTIIDTAGLEQSGPETLQGRMWAQTEAAIDEADVTLFVVDAKAGLTPADET LAEMLRRRGKPVVLVANKSEARGSDAGFYDAFTLGLGDPCAISAEHGQGMIDLRDAIV EAIGEDVAFPPEVDEAETDIVLPRTEPGSEEEEEEEPVYDETKPLRVAIIGRPNAGKS TLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRKARVTEKLEKLS VADSLRSIRFAETVVIVFDSTIPFEKQDLQLVDLVIREGRAAVLAFNKWDLVEDPQAF LADLREKTERLLPQARGIRAVPMSGQTGYGLDRLMQNIIDTDKIWNRRISTAKLNRWL DAQTTQHPPPAVSGRRLKLKYMTQVKARPPAFMISCTRPEAIPESYTRYLVNGLRKDF DMPGVPLRVHYRGSENPFESKAKKRR" misc_feature complement(2221821..2223215) /gene="engA" /locus_tag="AGROH133_07946" /note="GTP-binding protein Der; Reviewed; Region: PRK00093" /db_xref="CDD:178858" misc_feature complement(2222730..2223203) /gene="engA" /locus_tag="AGROH133_07946" /note="EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that...; Region: EngA1; cd01894" /db_xref="CDD:133294" misc_feature complement(2223171..2223194) /gene="engA" /locus_tag="AGROH133_07946" /note="G1 box; other site" /db_xref="CDD:133294" misc_feature complement(order(2222778..2222786,2222853..2222855, 2222859..2222864,2223168..2223179,2223183..2223185)) /gene="engA" /locus_tag="AGROH133_07946" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133294" misc_feature complement(order(2223099..2223110,2223120..2223140)) /gene="engA" /locus_tag="AGROH133_07946" /note="Switch I region; other site" /db_xref="CDD:133294" misc_feature complement(2223108..2223110) /gene="engA" /locus_tag="AGROH133_07946" /note="G2 box; other site" /db_xref="CDD:133294" misc_feature complement(order(2222970..2222975,2223039..2223056)) /gene="engA" /locus_tag="AGROH133_07946" /note="Switch II region; other site" /db_xref="CDD:133294" misc_feature complement(2223042..2223053) /gene="engA" /locus_tag="AGROH133_07946" /note="G3 box; other site" /db_xref="CDD:133294" misc_feature complement(2222853..2222864) /gene="engA" /locus_tag="AGROH133_07946" /note="G4 box; other site" /db_xref="CDD:133294" misc_feature complement(2222778..2222786) /gene="engA" /locus_tag="AGROH133_07946" /note="G5 box; other site" /db_xref="CDD:133294" misc_feature complement(2222094..2222612) /gene="engA" /locus_tag="AGROH133_07946" /note="EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that...; Region: EngA2; cd01895" /db_xref="CDD:133295" misc_feature complement(2222565..2222588) /gene="engA" /locus_tag="AGROH133_07946" /note="G1 box; other site" /db_xref="CDD:133295" misc_feature complement(order(2222139..2222147,2222241..2222243, 2222247..2222252,2222562..2222573,2222577..2222579)) /gene="engA" /locus_tag="AGROH133_07946" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133295" misc_feature complement(order(2222493..2222534,2222541..2222543)) /gene="engA" /locus_tag="AGROH133_07946" /note="Switch I region; other site" /db_xref="CDD:133295" misc_feature complement(2222502..2222504) /gene="engA" /locus_tag="AGROH133_07946" /note="G2 box; other site" /db_xref="CDD:133295" misc_feature complement(2222436..2222447) /gene="engA" /locus_tag="AGROH133_07946" /note="G3 box; other site" /db_xref="CDD:133295" misc_feature complement(order(2222358..2222363,2222433..2222438)) /gene="engA" /locus_tag="AGROH133_07946" /note="Switch II region; other site" /db_xref="CDD:133295" misc_feature complement(2222241..2222252) /gene="engA" /locus_tag="AGROH133_07946" /note="G4 box; other site" /db_xref="CDD:133295" misc_feature complement(2222139..2222147) /gene="engA" /locus_tag="AGROH133_07946" /note="G5 box; other site" /db_xref="CDD:133295" gene complement(2223252..2223923) /locus_tag="AGROH133_07947" /db_xref="GeneID:10267999" CDS complement(2223252..2223923) /locus_tag="AGROH133_07947" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279521.1" /db_xref="GI:325293657" /db_xref="GeneID:10267999" /translation="MANENDTFIREVNEQIRSEQLSRFWGRYGIVVVGAAVLVVVGAA GAGIYEYWNTSRASNSGDQFIAALKLASDNKTDEALKAFADLETSGHGNYPVLAKFRS ATLLSQKGDAAGAIAAFTAIGNDTSAPQVFRDTAKVRAAWLLVDNGTYDQVVALAEPL SGEGQTMRASAREALGLAAYKAGDFTKAKQWFEQIVSDAQAPRNVTNRAQIMLDNITA SGKAV" misc_feature complement(2223258..2223917) /locus_tag="AGROH133_07947" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4649" /db_xref="CDD:34268" gene complement(2224078..2224662) /locus_tag="AGROH133_07949" /db_xref="GeneID:10268000" CDS complement(2224078..2224662) /locus_tag="AGROH133_07949" /note="NnrU protein; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279522.1" /db_xref="GI:325293658" /db_xref="GeneID:10268000" /translation="MLFLVLCLALFFLTHLLKVFAPRFRAQMIAKIGEGPFKGVYSLA SLITLGLVIYAFGEARQETGFLWNPPVWTSHLAVTLMLPAMICLIASLIPAGHIATRT KHPLILAVKIWALAHLLANGETSSILLFASFLAWGVVMRISLKRRERAGEKVVRPFVS GRYDLVAIVGGIVLWGAFILKLHEWLIGVQPIAM" misc_feature complement(2224090..2224602) /locus_tag="AGROH133_07949" /note="NnrU protein; Region: NnrU; cl01697" /db_xref="CDD:154545" gene 2224814..2225797 /locus_tag="AGROH133_07955" /db_xref="GeneID:10268001" CDS 2224814..2225797 /locus_tag="AGROH133_07955" /note="glycoside hydrolase/deacetylase, beta/alpha-barrel" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279523.1" /db_xref="GI:325293659" /db_xref="GeneID:10268001" /translation="MFRPLTAFSLSLCLALPAFAENAEKPKQLVIVSFDGAGDNSLWE RSRATAKEVGAHFTYFLACTLVMDRKTSAKTYQGPGQKAGRSNVGFGQSPEEVETRLR NIWSAYREGHEIGNHTCGHFDGGQWTAEQWDGEFTTFTSTLENAWQMIGKKGEEPEGW RDMVKNINGFRAPYLSQGPALTAAQKKHGFVYDATSITKGPEWPVERDGIEHFGLPLV PEGPGNRPIIAMDYNLFIRHSIGIETPDRAQEFEDRAYAAFRTAFDKQYNGERIPLQM GFHFVKMNGGAYWNAYERLLREVCRSDDVACVSYAEAMPIIKARRKQKTEG" misc_feature 2224880..2225392 /locus_tag="AGROH133_07955" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene complement(2225853..2227121) /gene="bacA" /locus_tag="AGROH133_07957" /db_xref="GeneID:10268002" CDS complement(2225853..2227121) /gene="bacA" /locus_tag="AGROH133_07957" /note="in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; ABC-type long-chain fatty acid transport system, fused permease and ATPase components" /codon_start=1 /transl_table=11 /product="bacteroid development protein" /protein_id="YP_004279524.1" /db_xref="GI:325293660" /db_xref="GeneID:10268002" /translation="MFHSFFPKPKLFFTSAIVWAFVAILGWYFIVEGLGRSWGYVMPE QEPYDLSYFLVPANLFFYAYLALCLVLFGAVWTVLAKDHPWKFWSIWGSLLIIAVTYF GVQISVVINNFRRPFGDLLQNALSKQPGIEVWDFYSLQIVFAKIAFLSMAVSILTDFF TSHYIFRWRTAMNDFYMSKWEKLRHIEGASQRVQEDTMRFSSTLEGLGITLINSVMTL VVFLPILFALSSYVSELPILGEVPHALFWLAIVWSVFGTVLLATVGIKLPGLNFRNQR VEAAYRKELVYGEDHADRAQPPTVKELYSNVRKNYFRMYWHYLYFNVARYFYIQADAV FLLLMLVPTIVAGKITYGIYQQIATAFGQVSNSFQYLVNSWTTIIELLSIHKRLVAFE AAIDDKPLPEIDERYLQREAEAGELAANKP" misc_feature complement(2225898..2227121) /gene="bacA" /locus_tag="AGROH133_07957" /note="ABC transporter transmembrane region; Region: ABC_membrane; cl00549" /db_xref="CDD:193863" gene complement(2227314..2228627) /locus_tag="AGROH133_07965" /db_xref="GeneID:10268003" CDS complement(2227314..2228627) /locus_tag="AGROH133_07965" /note="Protein of unknown function DUF1228; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="MFS permease" /protein_id="YP_004279525.1" /db_xref="GI:325293661" /db_xref="GeneID:10268003" /translation="MRVDKDAQATRSLHLVPTKTAYAADQNNSLVPWQCGCDKPYMSI DKPLSPKHLTALGFAGALMMASAMGFGRFSFTPILPGMMADVPLSAGDAGIVAAGNFA GYLAGAVLAAYSWGSGRERLVALCGLFSTGALLLAMAAFNSVAAFTLIRFFAGVASAM TMIFTSQIVIGHAMKAGKDHIQALHYGGVGAGIAISSLVVYLIGVVFDGGGASWREEW IAGAVFSFATFLLVWRVLPAGPPRHASALSEPTLKWTKPLFLTTLAYGLFGFGYVITA TFIVAIARMAAAGAFVEFLAWFVTGCAAAISLFLWKPVLKSQGLKRAFVIVLAVEAVG VFASVMLPPVPGVLAGGLLLGLTFMVITAYGLQLGREFAGPSPRRAFALMTAAFGTGQ IVGPLAAGWIAEVTGSFTAPSILASGVLVASILLMLPVLATERRR" misc_feature complement(2228181..2228435) /locus_tag="AGROH133_07965" /note="Protein of unknown function (DUF1228); Region: DUF1228; pfam06779" /db_xref="CDD:115437" misc_feature complement(2227617..2228267) /locus_tag="AGROH133_07965" /note="Major Facilitator Superfamily; Region: MFS_1; pfam07690" /db_xref="CDD:191813" gene complement(2228829..2229581) /gene="map" /locus_tag="AGROH133_07978" /db_xref="GeneID:10268004" CDS complement(2228829..2229581) /gene="map" /locus_tag="AGROH133_07978" /EC_number="3.4.11.18" /note="catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential" /codon_start=1 /transl_table=11 /product="methionine aminopeptidase" /protein_id="YP_004279526.1" /db_xref="GI:325293662" /db_xref="GeneID:10268004" /translation="MVISTDEELVLLKDIGRICAVAMQTMADALEPGITTAELDAIGR KVLEDNDAQSAPEFCYQFPGATCISVNDEVAHGIPGPRIIKAGDLVNIDVSAVKSGFF GDTGSSFAVPPVKKEIERLCRDGKRAMWTGLQQVKTGRPFADIGNAIGSFAKKNRYTL ITNLASHGIGRSLHEEPKELATWPDKGERRIMQEGMVFTVEPFLSTGAYWAEDGDDDP WTLYSDPSAPTVQYEHTVVATKNGPLVLTLVE" misc_feature complement(2228841..2229581) /gene="map" /locus_tag="AGROH133_07978" /note="methionine aminopeptidase; Reviewed; Region: PRK07281" /db_xref="CDD:180918" misc_feature complement(2228838..2229548) /gene="map" /locus_tag="AGROH133_07978" /note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086" /db_xref="CDD:29971" misc_feature complement(order(2228883..2228885,2228979..2228981, 2229081..2229083,2229270..2229272,2229303..2229305, 2229354..2229356)) /gene="map" /locus_tag="AGROH133_07978" /note="active site" /db_xref="CDD:29971" gene complement(2229636..2230697) /locus_tag="AGROH133_07979" /db_xref="GeneID:10268005" CDS complement(2229636..2230697) /locus_tag="AGROH133_07979" /note="Bacterial luciferase-like; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin- dependent oxidoreductases" /codon_start=1 /transl_table=11 /product="monooxygenase" /protein_id="YP_004279527.1" /db_xref="GI:325293663" /db_xref="GeneID:10268005" /translation="MELGLYTFADVNPNPADGRGPEGARRLRELLEEIELADQVGLDV FGLGEHHRPDYVASSPSTVLAAAAVKTKNIRLTSAVSVLSSDDPVRVFQQFSTVDLLS NGRAEIMAGRGSFIESYPLFGYDLEDYDVLFAEKLDLLLALRENEIVTWSGTKHPAIN GRGVYPRPLQERLPVWIAVGGTPQSVARAGAMGLPVALAIIGGEYRRFAPLFDLYHEA ARRAGQEKTRLRTSINVHGFIADTTDKAADQFYGPQAEVMNRIGRERGWGPTNRAHFD AARGPEGNLFLGEPELVAEKIIKAHGVFKNDRFLLQMAIGLMPHDQIMRGIELYGTKV APVVRKELTGSADPVKATA" misc_feature complement(2229681..2230694) /locus_tag="AGROH133_07979" /note="Flavin-utilizing monoxygenases; Region: Flavin_utilizing_monoxygenases; cl07892" /db_xref="CDD:189181" misc_feature complement(2229684..2230589) /locus_tag="AGROH133_07979" /note="Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]; Region: COG2141" /db_xref="CDD:32324" gene 2230930..2231418 /gene="bdhA" /locus_tag="AGROH133_07980" /db_xref="GeneID:10268006" CDS 2230930..2231418 /gene="bdhA" /locus_tag="AGROH133_07980" /EC_number="1.1.1.30" /note="Short-chain dehydrogenase/reductase SDR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="3-hydroxybutyrate dehydrogenase" /protein_id="YP_004279528.1" /db_xref="GI:325293664" /db_xref="GeneID:10268006" /translation="MHRTVIVTGSTSGIGLGIAQRFAREGANIVLNGFGDEDEIEKLR LLLEAESGGRVLYHPADMTKPDEIADLINSAHEKLGSVDVLVNNAGIQHIAPIEEFPT EKWDWIIAINLTSSFHTMRVAIPLMKKAGKGRIINIASAHGLVASPFKSAYVAASTAS WA" misc_feature 2230930..>2231397 /gene="bdhA" /locus_tag="AGROH133_07980" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(2230954..2230956,2230960..2230965,2230969..2230971, 2231026..2231034,2231191..2231199,2231341..2231349, 2231386..2231388) /gene="bdhA" /locus_tag="AGROH133_07980" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(2231263..2231265,2231347..2231349,2231386..2231388) /gene="bdhA" /locus_tag="AGROH133_07980" /note="active site" /db_xref="CDD:187535" gene 2231409..2231705 /gene="bdhA" /locus_tag="AGROH133_07981" /db_xref="GeneID:10268007" CDS 2231409..2231705 /gene="bdhA" /locus_tag="AGROH133_07981" /EC_number="1.1.1.30" /note="Short-chain dehydrogenase/reductase SDR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="D-beta-hydroxybutyrate dehydrogenase" /protein_id="YP_004279529.1" /db_xref="GI:325293665" /db_xref="GeneID:10268007" /translation="MGLTKTAALELAQTGVTVNAICPGYVLTPLVEKQIPEMAKVRGI SEEAVKNDVMLELQATKQFVTIDDVAAAALFLASDAASNITGTHISVDGGWTAQ" misc_feature <2231409..2231702 /gene="bdhA" /locus_tag="AGROH133_07981" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" gene 2231761..2233299 /gene="xdhA" /locus_tag="AGROH133_07982" /db_xref="GeneID:10268008" CDS 2231761..2233299 /gene="xdhA" /locus_tag="AGROH133_07982" /EC_number="1.17.1.4" /note="Xanthine dehydrogenase, small subunit, bacteria; Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase" /protein_id="YP_004279530.1" /db_xref="GI:325293666" /db_xref="GeneID:10268008" /translation="MRARACIVSRLGTGSTGQKARQCMNDAISFILNSETISLKGFGP TDTLLDYLRLQRRLTGTKEGCAEGDCGACTVLVGRLVDGSLSYEGVNACIRFLGSLHA THIVTVEHLAGRDGTLHPVQQAMVDFHGSQCGFCTPGFIMSLYGLWLASENPSRADIE KALQGNLCRCTGYEPIVRAAEKIAAARPSALFDPLQRDRTDIMARLWAIRANETITVT RGEDRTIIPATLAELTDIYAAEPKATIVAGSTDVGLWVTKQMRALNPVIFINNLGDLQ GIAVDENGVTLGAGVTYSQAFKTIAEHFPPLARLFDRLGGEQVRNMGTIGGNIANGSP IGDTPPALIALGATLTLRSSSGSRTLPLESYFIDYGKQDRLSGEFVEKLFIPFQTPGS HYAVYKISKRRDEDISALCAAFNLTLDADGTVEDIRVAFGGMAGTPKRAAHLEAALLG KPWSQETIDAARDALDDDFTPLTDWRATAEYRQLTAKNLLTRFFLETSGEKQELARFS LEEA" misc_feature 2231842..2233251 /gene="xdhA" /locus_tag="AGROH133_07982" /note="xanthine dehydrogenase, small subunit; Region: xanthine_xdhA; TIGR02963" /db_xref="CDD:163087" misc_feature 2232079..2232306 /gene="xdhA" /locus_tag="AGROH133_07982" /note="[2Fe-2S] binding domain; Region: Fer2_2; pfam01799" /db_xref="CDD:190116" misc_feature 2232943..2233251 /gene="xdhA" /locus_tag="AGROH133_07982" /note="CO dehydrogenase flavoprotein C-terminal domain; Region: CO_deh_flav_C; pfam03450" /db_xref="CDD:146206" gene 2233303..2235642 /gene="xdhB" /locus_tag="AGROH133_07983" /db_xref="GeneID:10268009" CDS 2233303..2235642 /gene="xdhB" /locus_tag="AGROH133_07983" /EC_number="1.17.1.4" /note="Xanthine dehydrogenase, molybdopterin binding subunit; Xanthine dehydrogenase, molybdopterin-binding subunit B" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase molybdopterin binding subunit" /protein_id="YP_004279531.1" /db_xref="GI:325293667" /db_xref="GeneID:10268009" /translation="MDTTSFDKTKTEIDGPVHASLRHDSAHKHVTGSAEYIDDIPEPA GLVHGALGLSDRAHAEIVSMDLSEVEAAPGVLWVMTGKDVPGENDVSSGGRHDEPLLA ETKVEFHGQPIFAVFAESRDIARKAARKAKIVYKDLPHFTDIDTAIENGGALVIDPMT LKRGDAKLEMDVAPRRLTGTMRIGGQEHFYLESHIAMAVPGEDDEVTLWSSTQHPSEI QHIVSHILQVPSNAVTVQVRRMGGGFGGKETQGNQFAALCAIAAKKLNRAVKIRPDRD EDMTATGKRHDFRVDYELGFDEEGRIHAVDATYAARCGFSSDLSGPVTDRALFHADSS YFYPHVHLTSRPLKTHTVSNTAFRGFGGPQGMLGAERFIEEIAYAVGKDPLDVRKLNF YGETGSGRTTTPYHQEVEDNIIARVVEELEASSEYRARRQAIVEFNKTSPIIRKGIAL TPVKFGISFTMTAFNQAGALVHIYNDGSIHLNHGGTEMGQGLYTKVAQVVADAFQVDI GRVKITATTTGKVPNTSATAASSGTDLNGMAAYDAARQIRERLIKFAAENWNVPEEEV VFLPNRVRIGLEEIAFNDFIKRAYFARVQLSAAGFYKTPKIHWDRAAGRGTPFYYFAY GAACSEVSIDTLTGEYMMDRTDILHDVGKSLNPAIDIGQVEGAFVQGMGWLTTEELWW DGKGRLRTHAPSTYKIPLASDRPKIFNVQLAEWSENAEPTIGRSKAVGEPPFMLAISV LEALSMAVASIADYKVCPRLDAPATPERVLMAVERLKKV" misc_feature 2233351..2235633 /gene="xdhB" /locus_tag="AGROH133_07983" /note="xanthine dehydrogenase, molybdopterin binding subunit; Region: xanthine_xdhB; TIGR02965" /db_xref="CDD:163089" misc_feature 2233393..2233719 /gene="xdhB" /locus_tag="AGROH133_07983" /note="Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; pfam01315" /db_xref="CDD:144787" misc_feature 2233780..2235417 /gene="xdhB" /locus_tag="AGROH133_07983" /note="Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738" /db_xref="CDD:145733" gene 2235654..2236502 /gene="xdhC" /locus_tag="AGROH133_07984" /db_xref="GeneID:10268010" CDS 2235654..2236502 /gene="xdhC" /locus_tag="AGROH133_07984" /note="Xanthine dehydrogenase accessory protein XdhC; Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase chaperone" /protein_id="YP_004279532.1" /db_xref="GI:325293668" /db_xref="GeneID:10268010" /translation="MTSLSRFLASSGPAILVEIEAVKGSSPREAGTFMLVSRKALWET IGGGQFEYMAIDHARAMLKNGTIEDGMDIPLGPEIGQCCGGRTLLRFRLVTADIAAAL EVRLKAETEQQPAVFIFGAGHVGKALTDALSLLPLTLTVVETRENELRDLSAGVVSVL TPMPEALIAKIPANGAAIIVTHDHALDFLIAKEALARDDLAYVGMIGSKTKRATFAHW LEREGEPPSRLQKLILPIGGSSVRDKRPAVIAALVAAELLQAFSAAETRRTENQRGHP QDQDHA" misc_feature 2235690..2235848 /gene="xdhC" /locus_tag="AGROH133_07984" /note="XdhC and CoxI family; Region: XdhC_CoxI; pfam02625" /db_xref="CDD:190370" misc_feature 2235696..2236391 /gene="xdhC" /locus_tag="AGROH133_07984" /note="xanthine dehydrogenase accessory protein XdhC; Region: xanthine_xdhC; TIGR02964" /db_xref="CDD:163088" gene 2236741..2237667 /locus_tag="AGROH133_07985" /db_xref="GeneID:10268011" CDS 2236741..2237667 /locus_tag="AGROH133_07985" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004279533.1" /db_xref="GI:325293669" /db_xref="GeneID:10268011" /translation="MKMSRQFPLNALRVFEAAARHLSFTKAGEELGMTQTAVSYQVKL LEENVGEPLFIRKARQVVLTEAGQKLAPKVAEAFNTLREAVDNVRDTSDTTLTIHSTA TFASRWLSRHLGAFQLEHPSIAVRLDTSSALIDFTQSDCDVAIRWSSDDGKGLIYHQL LRGVYTPMLHPNLAESIGGLNKPEDLLRLRIIDPGDIWWSQWFREVGIENPGLDRYPR SRLSVQAFEAAAAIASQGVAMLTPELYADEIALGRLYQPFEHLSNEGKNYWLVYPENR RNIRKIRLFRDWILKRIDENRPQTSQYPISGA" misc_feature 2236747..2237631 /locus_tag="AGROH133_07985" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature 2236765..2236944 /locus_tag="AGROH133_07985" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2237023..2237607 /locus_tag="AGROH133_07985" /note="HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432" /db_xref="CDD:176123" misc_feature order(2237023..2237046,2237050..2237103,2237107..2237127) /locus_tag="AGROH133_07985" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176123" misc_feature order(2237041..2237046,2237050..2237052,2237395..2237397, 2237470..2237472) /locus_tag="AGROH133_07985" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176123" gene complement(2237643..2237981) /locus_tag="AGROH133_07987" /db_xref="GeneID:10268012" CDS complement(2237643..2237981) /locus_tag="AGROH133_07987" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279534.1" /db_xref="GI:325293670" /db_xref="GeneID:10268012" /translation="MRLVLTVLFLLMAFNATALAHESHKGFKYESYCCNGDAETGDCQ MIPTRSVRVTQDGYEVSLAPGDHRLVTRRHVFSWSQREARRSEDGEYHLCLFPDEDTP RCFYAPDMGY" gene 2238538..2239800 /locus_tag="AGROH133_07988" /db_xref="GeneID:10268013" CDS 2238538..2239800 /locus_tag="AGROH133_07988" /note="Protein of unknown function DUF989; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279535.1" /db_xref="GI:325293671" /db_xref="GeneID:10268013" /translation="MYEYAIAWEWMAFAVRWLHVITAIAWIGSSFYFIALDLGLVKRP HLPPGAYGEEWQVHGGGFYHIQKYLVAPAQMPEHLTWFKWESYVTWLSGFAMLCIVYY GGADLFLIDHSVLALTQFQAICLSLASLAVGWLFYDFLCKSPLGNNTWGLMVVLYVAL VAMAWGYTQVFTGRAAFLHLGAFTATIMSANVFFIIIPNQKIVVADLIAGRTPDPKYG RIAKQRSLHNNYLTLPVIFFMLSNHYPLAFATEFNWIIAALVFLMGVTIRHWFNTTHA RKGKPTWTWLLTALIFIVIMWLSTVPKVLTGEEEQKAATLSPMQQQFVGDAHFASARD VVQGRCSMCHAAEPVWEGVPFTPKSVKLETDAQIAAHAREIYLQAGRSHAMPPGNITA ITPQERKVLTAWYESAVSAGKDAKEKTE" misc_feature 2238544..2239767 /locus_tag="AGROH133_07988" /note="Predicted membrane protein [Function unknown]; Region: COG3748" /db_xref="CDD:33543" misc_feature 2238550..2239440 /locus_tag="AGROH133_07988" /note="Protein of unknown function (DUF989); Region: DUF989; pfam06181" /db_xref="CDD:148030" misc_feature 2239525..2239758 /locus_tag="AGROH133_07988" /note="Cytochrome c; Region: Cytochrom_C; cl11414" /db_xref="CDD:196222" gene 2239797..2241107 /gene="gda" /locus_tag="AGROH133_07997" /db_xref="GeneID:10268014" CDS 2239797..2241107 /gene="gda" /locus_tag="AGROH133_07997" /EC_number="3.5.4.3" /note="Catalyzes the deamination of guanine; Cytosine deaminase and related metal-dependent hydrolases" /codon_start=1 /transl_table=11 /product="guanine deaminase" /protein_id="YP_004279536.1" /db_xref="GI:325293672" /db_xref="GeneID:10268014" /translation="MSMVLLRGRLLSFRRAPLAIDDTQSYLYIEDGGLLIENGKIAAI GDYADIRKQAPDDIEEKDHRPHLIVPGLIDMHLHFPQMQVIGSYAANLLEWLNTYTFP EECRFVESAHAQRIATHFYDELLRHGTTTAVAYCSVHKTSADAFFTEALKRGMLMVGG KVMMDRNAPQGLLDTPETSYDETRAVIADWHGKGRNHVAITPRFAITSTPKQMEAAQA LAQEFPDLFIQTHLSENLDEIKYTCELYPEATDYTDIYVRYGLMGNKTLLGHAIHLSE READVLSETGAVAVHCPTSNLFIGSGLFPMKKLQRREKPVRIAVATDIGGGSSYSMLR TMDEGYKIQQLLGERLNPLESWYLMTRGNAEALSMVDRIGTLDAGTDADITVLNASST PAMALKMEVVKSLTEELFLMLTMGDDRTVVETYVAGKAMKSALA" misc_feature 2239797..2241101 /gene="gda" /locus_tag="AGROH133_07997" /note="guanine deaminase; Provisional; Region: PRK09228" /db_xref="CDD:181711" misc_feature 2239812..2241080 /gene="gda" /locus_tag="AGROH133_07997" /note="Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and...; Region: GDEase; cd01303" /db_xref="CDD:30046" misc_feature order(2240022..2240024,2240028..2240030,2240487..2240489, 2240496..2240498,2240604..2240606,2240763..2240765) /gene="gda" /locus_tag="AGROH133_07997" /note="active site" /db_xref="CDD:30046" gene 2241287..2242039 /locus_tag="AGROH133_07998" /db_xref="GeneID:10268015" CDS 2241287..2242039 /locus_tag="AGROH133_07998" /note="Protein of unknown function DUF81; Predicted permeases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279537.1" /db_xref="GI:325293673" /db_xref="GeneID:10268015" /translation="MPDFETTTTLMIVATFIVAGVVKGVTGMGLPTVAMGVLGLFMPP VVAAGLLILPSFITNIWQLLAGPDFKAVVSRLWPMMIAIAVGTLLGIRLMTSGTGVWT TSTLGLCLAAYAAYSLLAKPFAVPARLEPKLSPAVGLATGLLTGGTGIFVVPAVPYIQ SLGFSRDDLVQALGLSFTVSTVALAAGLASQDAFRVEHMSLSALAVLPALLGMWLGQN IRRIVTPATFRRWFLICLLLLGAELFLRAFWS" misc_feature 2241320..>2241565 /locus_tag="AGROH133_07998" /note="Sulfite exporter TauE/SafE; Region: TauE; pfam01925" /db_xref="CDD:190162" gene complement(2242059..2242709) /locus_tag="AGROH133_08007" /db_xref="GeneID:10268016" CDS complement(2242059..2242709) /locus_tag="AGROH133_08007" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279538.1" /db_xref="GI:325293674" /db_xref="GeneID:10268016" /translation="MLEIYCISIIIQMVSQIIAYFNMLNYLLRLLIAVLISPAIVFAA ECPSGKNDGDEFVLAHGQVRSEFRRSGPIVLVENDFQGAGKQRLFLFRGLIELARSGD DGNYSQHFTSNLEAFWPLKVGARRTFEFLPLETTKIEDKWSLTLAVTKRRAFPIKFCN YEVFYVTYDIRKNGKEEERWTAVYSPDLRATVAKIYDEGTEDEEIVAYNLIAPLKR" gene 2242822..2243955 /gene="lldD" /locus_tag="AGROH133_08009" /db_xref="GeneID:10268017" CDS 2242822..2243955 /gene="lldD" /locus_tag="AGROH133_08009" /EC_number="1.1.2.3" /note="Alpha-hydroxy acid dehydrogenase, FMN-dependent; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases" /codon_start=1 /transl_table=11 /product="L-lactate dehydrogenase" /protein_id="YP_004279539.1" /db_xref="GI:325293675" /db_xref="GeneID:10268017" /translation="MGKILTIADLKKQAQRRVPKMFFDYADSGAWTEGTYRANEEDFS KIKLRQRVLVDMTDRSLATEMIGQKVSMPVALSPTGLTGMQHADGEMLAAKAAEEFGV PFTLSTMSICSIEDVASVTSKPFWFQLYVMKDRDFVNNLIDRAKAAGCSALVLTLDLQ ILGQRHKDLRNGLSAPPKFTPKHIWQMATRPRWCLDMLRTQRCSFGNIVGHAKNVSDL SSLSSWTAEQFDPRLSWKDVEWIKERWGGKLILKGILDEEDARASLDTGADAIIVSNH GGRQLDGAHSSIAMLPRIVDAVGDRVEVHMDGGIRSGQDVLKAVALGAKGTYIGRPFL YGLGADGKQGVTTALEIIRKEMDISMALCGKRLITDVDRSILA" misc_feature 2242831..2243952 /gene="lldD" /locus_tag="AGROH133_08009" /note="L-lactate dehydrogenase; Provisional; Region: lldD; PRK11197" /db_xref="CDD:183033" misc_feature 2242843..2243949 /gene="lldD" /locus_tag="AGROH133_08009" /note="TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108" /db_xref="CDD:195791" misc_feature order(2243743..2243748,2243809..2243814) /gene="lldD" /locus_tag="AGROH133_08009" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:73384" gene complement(2244159..2244503) /gene="qacE" /locus_tag="AGROH133_08010" /db_xref="GeneID:10268018" CDS complement(2244159..2244503) /gene="qacE" /locus_tag="AGROH133_08010" /note="Small Multidrug Resistance protein; Membrane transporters of cations and cationic drugs" /codon_start=1 /transl_table=11 /product="Quaternary ammonium compound-resistance protein qacE" /protein_id="YP_004279540.1" /db_xref="GI:325293676" /db_xref="GeneID:10268018" /translation="MNAAVLTYGALVAAIVCEVIATSFLQQSQQFTKLLPTVLMALFY GAAFYLLSFTLRALPVGVAYAIWSGLGIVLISGIGYFVFRQTLDIAAVVGLGFIVTGV VIVNVFSKTMGH" misc_feature complement(2244162..2244485) /gene="qacE" /locus_tag="AGROH133_08010" /note="Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910" /db_xref="CDD:186252" gene complement(2244500..2245144) /locus_tag="AGROH133_08015" /db_xref="GeneID:10268019" CDS complement(2244500..2245144) /locus_tag="AGROH133_08015" /note="Bacterial regulatory proteins, tetR family; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_004279541.1" /db_xref="GI:325293677" /db_xref="GeneID:10268019" /translation="MKFKSAVALTISLQRNQPSGMFATMTNAHERKKQPEIVRRNLLD CAAKLAAEQGVAALSVQAVADAAGVTKGGLFHHFPSKQVLLEAVMTDLLAALDTEIDD LISQDCEAFGSFTRAYVNAVFSDRGRDSGRQWAAISVSMVGEPSLRRMWNSWIEGRLA RHKETDDGVVLEMVRLAADGIWFADLLADDGKAGGDRAALRARMIAQTKKEVER" misc_feature complement(<2244713..2245069) /locus_tag="AGROH133_08015" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(2244881..2245021) /locus_tag="AGROH133_08015" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 2245251..2246552 /gene="dacF" /locus_tag="AGROH133_08017" /db_xref="GeneID:10268020" CDS 2245251..2246552 /gene="dacF" /locus_tag="AGROH133_08017" /EC_number="3.4.16.4" /note="Beta-lactamase-type transpeptidase fold" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase" /protein_id="YP_004279542.1" /db_xref="GI:325293678" /db_xref="GeneID:10268020" /translation="MSGTIKRGMAGAWVFALAFFCAILSLQASPAQAGYAHFIMDANT GKVLAAQNADVLNHPASLTKMMTLYMTFEALHAGRIRWDQKIRMSRNGAAVIPSKLYV REGQTFTVREAVYGMIVKSANDMAEGMGDHLGGSEAQFAQMMTRKARQLGMTKTVFRN ASGLPSKSQVTTARDMAKLGLALQRDFPKEYGLFAMESFSFRGKRIRGHNNLMYRYQG MDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGGKTARGRDAQMAALLDKAMPQASRS RNTEQLVASANVSRTFDVPPAAVPPAAVPLPMFAERRADPIAMQIATANSQMADMIQV SAIPRPAPAAKMTGQRSRWEVQIAATDSEAAARSLLANARSNIAGSYSGIAPYTEAVQ SGSATLYRARFTGFEDQSSAVSACKELKAQSYACVVMNSEG" misc_feature 2245347..>2245955 /gene="dacF" /locus_tag="AGROH133_08017" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" misc_feature 2246298..2246534 /gene="dacF" /locus_tag="AGROH133_08017" /note="Sporulation related domain; Region: SPOR; cl10051" /db_xref="CDD:186898" gene complement(2246556..2247299) /locus_tag="AGROH133_08020" /db_xref="GeneID:10268021" CDS complement(2246556..2247299) /locus_tag="AGROH133_08020" /note="Phosphoesterase MJ0912; Diadenosine tetraphosphatase and related serine/threonine protein phosphatases" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279543.1" /db_xref="GI:325293679" /db_xref="GeneID:10268021" /translation="MIFAAIADIHGNCAALEAVLEDIARLGIKDIVNLGDCFSGPLEA GFTGDVLVGNWIPSVLGNHDRELIERAPEEMGSWERPAHAQLTAAHLDWLHTLPFSMV FKDVAYCCHGSPRGDLEYWLETLSTEGVLKLRPLSEIEAMADGITQPLMLCGHTHIAR TVQLSDGRLIVNPGSVGCPGWKDGTPFDHHVEVGHPLASYAVLEETARGWQVYFRQIR YDNLAMAEMAKVNGIPYLADALENGWLKR" misc_feature complement(2246688..2247299) /locus_tag="AGROH133_08020" /note="metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995" /db_xref="CDD:196777" gene complement(2247305..2247661) /locus_tag="AGROH133_08021" /db_xref="GeneID:10268022" CDS complement(2247305..2247661) /locus_tag="AGROH133_08021" /note="HIUase/Transthyretin family; Transthyretin-like protein" /codon_start=1 /transl_table=11 /product="transthyretin-like protein" /protein_id="YP_004279544.1" /db_xref="GI:325293680" /db_xref="GeneID:10268022" /translation="MTGLTTHVLDAAHGTPAEGLTIELYRLSGDRREKIKTVKTNSDG RVDGGPLLVGDSFKAGEYELVFHAGDYLRGKGVTLAEPAFLDIIPIRFGIADESGHYH VPLLLSPYSYSTYRGS" misc_feature complement(2247308..2247658) /locus_tag="AGROH133_08021" /note="HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU)...; Region: TLP_HIUase; cd05822" /db_xref="CDD:100114" misc_feature complement(order(2247317..2247319,2247344..2247346, 2247350..2247352,2247356..2247358,2247527..2247529, 2247635..2247637,2247641..2247643)) /locus_tag="AGROH133_08021" /note="active site" /db_xref="CDD:100114" misc_feature complement(order(2247314..2247334,2247338..2247340, 2247383..2247391,2247401..2247403,2247407..2247412, 2247620..2247631)) /locus_tag="AGROH133_08021" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:100114" gene complement(2247658..2248158) /gene="allA" /locus_tag="AGROH133_08022" /db_xref="GeneID:10268023" CDS complement(2247658..2248158) /gene="allA" /locus_tag="AGROH133_08022" /EC_number="3.5.3.19" /note="catalyzes the formation of glyoxylate from (S)-ureidoglycolate" /codon_start=1 /transl_table=11 /product="Ureidoglycolate hydrolase" /protein_id="YP_004279545.1" /db_xref="GI:325293681" /db_xref="GeneID:10268023" /translation="MTDFLEIKPLTKEAFASFGDVIEITPSSMRHINGGQTERHHALA VPEAAGEGARIILNIFRGQPRTFPHTIEMMERHPFGSQSFSPLSGRPFLVVVAEDEGG KPGRPQAFLARGDQGVNYRRNVWHYPLMPLQAISDFLVADREGPGNNLEEHFFDAPYM IAEPSL" misc_feature complement(2247661..2248155) /gene="allA" /locus_tag="AGROH133_08022" /note="Ureidoglycolate hydrolase [Nucleotide transport and metabolism]; Region: DAL3; COG3194" /db_xref="CDD:33007" misc_feature complement(2247670..2248149) /gene="allA" /locus_tag="AGROH133_08022" /note="Ureidoglycolate hydrolase; Region: Ureidogly_hydro; cl01250" /db_xref="CDD:194080" gene complement(2248162..2248524) /locus_tag="AGROH133_08023" /db_xref="GeneID:10268024" CDS complement(2248162..2248524) /locus_tag="AGROH133_08023" /note="Protein of unknown function DUF86; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279546.1" /db_xref="GI:325293682" /db_xref="GeneID:10268024" /translation="MSTDRLLLYLKEMDVAASRIRDFIQDMDEATFSSDTRTQMAVMM CLALIGEAVAKLDKHYPAFLQQHPEIPWIKMKGMRNLIVHDYFRAELSVVWKTITQSI PDLQARLSLLRNWHAQGE" misc_feature complement(2248165..2248524) /locus_tag="AGROH133_08023" /note="Protein of unknown function DUF86; Region: DUF86; cl01031" /db_xref="CDD:154157" gene complement(2248521..2248811) /locus_tag="AGROH133_08024" /db_xref="GeneID:10268025" CDS complement(2248521..2248811) /locus_tag="AGROH133_08024" /note="DNA polymerase, beta-like region; Predicted nucleotidyltransferases" /codon_start=1 /transl_table=11 /product="DNA polymerase, beta domain protein region" /protein_id="YP_004279547.1" /db_xref="GI:325293683" /db_xref="GeneID:10268025" /translation="MRPSEVLEKNREAIREATKRFNAANPRVFGSVARGEDRPDSDLD ILVDALPGTTLFDLGGLLEELKTILGVEVDVVTSGGLHSDIRARVLMEAKAV" misc_feature complement(2248524..2248790) /locus_tag="AGROH133_08024" /note="Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins; Region: NT_KNTase_like; cd05403" /db_xref="CDD:143393" misc_feature complement(order(2248590..2248592,2248596..2248598, 2248680..2248682,2248686..2248691,2248710..2248712, 2248719..2248727)) /locus_tag="AGROH133_08024" /note="active site" /db_xref="CDD:143393" misc_feature complement(order(2248680..2248682,2248686..2248691, 2248710..2248712,2248719..2248727)) /locus_tag="AGROH133_08024" /note="NTP binding site [chemical binding]; other site" /db_xref="CDD:143393" misc_feature complement(order(2248590..2248592,2248680..2248682, 2248686..2248688)) /locus_tag="AGROH133_08024" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143393" misc_feature complement(order(2248590..2248592,2248596..2248598)) /locus_tag="AGROH133_08024" /note="antibiotic binding site [chemical binding]; other site" /db_xref="CDD:143393" gene complement(2248865..2249362) /locus_tag="AGROH133_08025" /db_xref="GeneID:10268026" CDS complement(2248865..2249362) /locus_tag="AGROH133_08025" /note="OHCU decarboxylase; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279548.1" /db_xref="GI:325293684" /db_xref="GeneID:10268026" /translation="MLTRDEFVSRFGGVFEHSPFIAERAYDVGGAGLELTAKAVHGGL CAQFRAASEAERLGVLRAHPDLAGKLAIAGELTADSRNEQAGAGLDRLSPEEHARFTE LNSAYTQKFGFPFIIAVKGLNRHDILSAFETRIGNDAATEFATATAQVEKIAWLRLSS MLPEG" misc_feature complement(2248868..2249362) /locus_tag="AGROH133_08025" /note="OHCU decarboxylase; Region: OHCU_decarbox; cl01251" /db_xref="CDD:194081" gene complement(2249362..2250285) /locus_tag="AGROH133_08026" /db_xref="GeneID:10268027" CDS complement(2249362..2250285) /locus_tag="AGROH133_08026" /EC_number="3.5.1.-" /note="glycoside hydrolase/deacetylase, beta/alpha-barrel; Predicted xylanase/chitin deacetylase" /codon_start=1 /transl_table=11 /product="chitooligosaccharide deacetylase protein" /protein_id="YP_004279549.1" /db_xref="GI:325293685" /db_xref="GeneID:10268027" /translation="MISENYSRNLVGYGRNSPDPKWPGGARIAVQFVINYEEGGESCI LDNDKASESLLSEIVGAQPWPGQRNLNMESIYEYGSRAGFWRLWRMFTDLGVTTTVYG VTAAMARNPQAVAAMKEAGWEIASHGYRWLEYKDFSEEEERKHIAEAVRLHTELTGER PFGMYQGKPSDNTLRLVMEEGGFLYSSDSYADDLPYWVKGLQDEPFLIIPYTLDTNDM RFATPQGFNSGDQFFAYLKDAFDVLYQEGLEGAPKMMSVGLHCRLVGRPGRAAALRRF IEYVLGHEKVWIPQRIEIARHWHENHKPGTL" misc_feature complement(2249374..2250270) /locus_tag="AGROH133_08026" /note="putative urate catabolism protein; Region: uraD_N-term-dom; TIGR03212" /db_xref="CDD:188298" misc_feature complement(2249731..2250060) /locus_tag="AGROH133_08026" /note="Polysaccharide deacetylase; Region: Polysacc_deac_1; cl12061" /db_xref="CDD:189245" gene complement(2250495..2251202) /locus_tag="AGROH133_08027" /db_xref="GeneID:10268028" CDS complement(2250495..2251202) /locus_tag="AGROH133_08027" /note="Protein of unknown function DUF1045" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279550.1" /db_xref="GI:325293686" /db_xref="GeneID:10268028" /translation="MRYAIHFTPSPNDPLTQAAAAWLGRDAYSGHAVEPPGTIDLGMQ EISYHTALPRRYGFHGTIKAPFRLAEGHSEAALLRDLMYFSGRQDPFTLPQLIVARHD NVFSLVPERPCEVLNFFAARVVQEFDRYRAPLSEAEIERADPDRLSASQLTNLHRWGS PHVMDEFRFQMSLTGGVEPSSSQRIERAVRKVFEPLLTRPLSFSSLALFIEDEPGAPF RVHSLHPMGRVSARKIA" misc_feature complement(2250519..2251202) /locus_tag="AGROH133_08027" /note="putative phosphonate metabolism protein; Region: Phn_opern_protn; TIGR03223" /db_xref="CDD:163188" misc_feature complement(2250543..2251022) /locus_tag="AGROH133_08027" /note="Protein of unknown function (DUF1045); Region: DUF1045; pfam06299" /db_xref="CDD:114990" gene complement(2251296..2252474) /gene="goxB" /locus_tag="AGROH133_08028" /db_xref="GeneID:10268029" CDS complement(2251296..2252474) /gene="goxB" /locus_tag="AGROH133_08028" /note="FAD dependent oxidoreductase; glycine/D-amino acid oxidases (deaminating)" /codon_start=1 /transl_table=11 /product="glycine oxidase" /protein_id="YP_004279551.1" /db_xref="GI:325293687" /db_xref="GeneID:10268029" /translation="MRAPRLPGSVPLLIVGGGIMGLWAAVKAERMGINALLLEAGRLG DGASGGLLGALMPHMPDRWSDKKQFQFDALVALEKQIAELEAETGLSAGYRRCGRIIP LPKPHLRSIAERHERDAGENWVSDGRRFHWHVGDSPSVAGWVDDAAGQAGFVLDTLAA RVSPRAMIALLSAFLRNARHVRVAEQCRVVSLDPDKGRAVLSSGDEVAFDHVIVANGH GSFALIRDAIGLEPGIVLGQAVKGQAALLDAAADPAMPVVFLNGLYIVPHEDGTVAIG STSEDCFSAPFSTDEKLEKLLADACAVVPSLGRAPVIERWAGLRPKAVGRDPMVGALS EYPRLVALSGGFKVSFGLAHCLADAALQAVCGHTPDVPSGFHLQEHVSIAVRTLETSD " misc_feature complement(2251344..2252459) /gene="goxB" /locus_tag="AGROH133_08028" /note="Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:31009" misc_feature complement(<2251476..>2252063) /gene="goxB" /locus_tag="AGROH133_08028" /note="Malate:quinone oxidoreductase (Mqo); Region: Mqo; cl14881" /db_xref="CDD:196842" gene 2252521..2253264 /locus_tag="AGROH133_08030" /db_xref="GeneID:10268030" CDS 2252521..2253264 /locus_tag="AGROH133_08030" /note="hypothetical protein; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="5-methylaminomethyl-2- thiouridinemethyltransferase" /protein_id="YP_004279552.1" /db_xref="GI:325293688" /db_xref="GeneID:10268030" /translation="MTHSKENTADIGSAADNPPAALDWREGDMPYSLAFDDHFYCQTD GRLECGHVFLSGNGLPQRWLERESIFRIGELGFGTGLNLCETWRQWKEVRNGHSKLHF MSFELYPMKADEIDRALSRWPEVDTERKALVARWPADPKGEVDIELDDQTRLTVVCGE ALTGISGRSEGFDAWFLDGFAPARNPDMWSLEIMQTLFGKTVPGGTFATYAAAGFVRR NLIAAGFELERRKGFAGKREMLCGTKPSR" misc_feature 2252575..2253255 /locus_tag="AGROH133_08030" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(2253298..2256969) /locus_tag="AGROH133_08031" /db_xref="GeneID:10268031" CDS complement(2253298..2256969) /locus_tag="AGROH133_08031" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; FOG: PAS/PAC domain" /codon_start=1 /transl_table=11 /product="two component sensor kinase/response regulator hybrid" /protein_id="YP_004279553.1" /db_xref="GI:325293689" /db_xref="GeneID:10268031" /translation="MTQGCGLLEKAYGAIAALDLPACIKDSELRYLMVNAAYGRVMGR PPAAFTGHTSLALSADIRDAEREDRERRSLVFATDEVISCHGAASSGPYKLRCERFTG DDGSLFLFEVFEEVPSVVKGVSDGGSADLLFDSGVIDLIDAGIVIYDRENRLVYCNAR FVEFYSDFNLQLKPGTRLETLMEAVYFSSGYRSVKSDDPDYQAWLQKQLRDFSLPYLE RVEQFADGRWVRMVNKRLENGMLVGLRVDVTEFKAHETLLSKQIRETWLLRAALEQLP VGVFLRDQDRRLTFANAAFEKFRGGSLADYLGKTECEMFPEEGAEFQRENEHILQTGE AIEKTGTIPLSDGGAVPVITRLGRVTTPDDEYYLVGSVTDVSLLKERENALIAAQAQA EALHRQFETVLHALPVGVLLLNADLVIEYVNPCFDTLWGEIGGEKSLVGKSYREFMEA NFESGLYDYGDIPFEELYNQRADRLLNDKVFTPREVRSKSGKVTVISKTRLDGGKILS TYADVTDVRMRDAEISEAKAELERVGEYMQGATRAMAQGLVLVEQGTIIMSNEAVARM FDVPPQLLEKGCNWSGFFAHCAGRGDFGTKEEAAATLTAWREHIAANRPFSWLIHIAG KTWLNLEATNSSGNYWLIIVTDVTEMKMREEELQRLLSRAEAADRAKSEFLANMSHEI RTPMNGVLGMAELLAKSNLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLR SVPFDPAEAVEDVVSLLSSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNA VKFTEMGHVLIELSAQSAEASETILSLRVEDSGIGIPADKLETIFDKFSQVDGSATRR HEGTGLGLAITVGLVGLFDGTINVVSEVGKGSTFEVNIPFHVTEKRRDAPLLAMAIED IRVLVIDDNDVNRRILAEQLKTWGIDGHAVQDGPSGIAVLQEAASLGFAIDAIILDYH MPVMNGLDVVERIRADSRFDDIAIVFLTSMDVVGDESLFTDLSVQAHLMKPARARLLR STLFDVVRDVRQKRARQDPQGLASGGSDAPVQPDNGPTDKKRRVVSPPTTVPDRRRPC LVDVLVAEDNDVNQIVFTQILQQAGLRFLIVGNGKKAVQAWEEHNPAVILMDVSMPVM NGHQATLAIRAAEQAAADGRHVPIIGVTAHTQDADRELCIAAGMDDYLSKPISPEILE DKIAQWLGDAMPRRDVPTA" misc_feature complement(2256205..2256558) /locus_tag="AGROH133_08031" /note="PAS fold; Region: PAS_7; pfam12860" /db_xref="CDD:193334" misc_feature complement(<2255509..2256333) /locus_tag="AGROH133_08031" /note="hypothetical protein; Provisional; Region: PRK13560" /db_xref="CDD:106506" misc_feature complement(2255977..2256168) /locus_tag="AGROH133_08031" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cl02459" /db_xref="CDD:141436" misc_feature complement(2254264..>2255340) /locus_tag="AGROH133_08031" /note="sensory histidine kinase AtoS; Provisional; Region: PRK11360" /db_xref="CDD:183098" misc_feature complement(2254777..2254968) /locus_tag="AGROH133_08031" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2254792..2254794,2254804..2254806, 2254813..2254815,2254825..2254827,2254834..2254836, 2254846..2254848,2254894..2254896,2254903..2254905, 2254915..2254917,2254924..2254926,2254936..2254938, 2254948..2254950)) /locus_tag="AGROH133_08031" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2254930..2254932) /locus_tag="AGROH133_08031" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2254288..2254611) /locus_tag="AGROH133_08031" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2254300..2254302,2254306..2254311, 2254324..2254326,2254330..2254332,2254378..2254389, 2254468..2254473,2254477..2254479,2254483..2254485, 2254489..2254491,2254570..2254572,2254579..2254581, 2254591..2254593)) /locus_tag="AGROH133_08031" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2254579..2254581) /locus_tag="AGROH133_08031" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2254381..2254383,2254387..2254389, 2254471..2254473,2254477..2254479)) /locus_tag="AGROH133_08031" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(2253844..2254242) /locus_tag="AGROH133_08031" /note="FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784" /db_xref="CDD:31127" misc_feature complement(2253871..2254218) /locus_tag="AGROH133_08031" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2253901..2253906,2253913..2253915, 2253970..2253972,2254036..2254038,2254060..2254062, 2254204..2254209)) /locus_tag="AGROH133_08031" /note="active site" /db_xref="CDD:29071" misc_feature complement(2254060..2254062) /locus_tag="AGROH133_08031" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2254036..2254044,2254048..2254053)) /locus_tag="AGROH133_08031" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2253898..2253906) /locus_tag="AGROH133_08031" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2253349..2253696) /locus_tag="AGROH133_08031" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(2253337..2253693) /locus_tag="AGROH133_08031" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2253379..2253384,2253391..2253393, 2253448..2253450,2253526..2253528,2253550..2253552, 2253679..2253684)) /locus_tag="AGROH133_08031" /note="active site" /db_xref="CDD:29071" misc_feature complement(2253550..2253552) /locus_tag="AGROH133_08031" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2253526..2253534,2253538..2253543)) /locus_tag="AGROH133_08031" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2253376..2253384) /locus_tag="AGROH133_08031" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 2257438..2258940 /gene="rhlE" /locus_tag="AGROH133_08032" /db_xref="GeneID:10268032" CDS 2257438..2258940 /gene="rhlE" /locus_tag="AGROH133_08032" /EC_number="3.6.1.-" /note="DEAD-like helicase, N-terminal; Superfamily II DNA and RNA helicases" /codon_start=1 /transl_table=11 /product="dead-box ATP-dependent RNA helicase" /protein_id="YP_004279554.1" /db_xref="GI:325293690" /db_xref="GeneID:10268032" /translation="MAPRKALLLTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLL LEGRDLIGLAQTGTGKTAAFGLPIIEMLMKQADRPANRTTRTLILAPTRELVNQIGEN LRSFVKKTPLRINQVVGGASINKQQLQLEKGTDVLVATPGRLLDLIARNAISLSKVTY LVLDEADQMLDLGFIHDLRKISKMVPAKRQTLLFSATMPKAISELASNFLTDPIKVEV TPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNENPDGRSIVFLRTKHGAEKLYKHLEH IGFKVASIHGNKSQGQRERALKGFKDGEIKVLVATDVAARGIDIPAVTHVFNYDLPEV PDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDIEKLMKIDIPVASGERPAGLASPT RPNNNNRGRNNNGGQPRGPREGGRHNGEPRPSRHHAPRDADNDLEVTSDFKRVKTAEG DAGRPAGPRKQRRPARKPGGSGGNRHAPAGGNGQEKRASGNGNGNRGRNR" misc_feature 2257468..2258853 /gene="rhlE" /locus_tag="AGROH133_08032" /note="ATP-dependent RNA helicase RhlE; Provisional; Region: PRK10590" /db_xref="CDD:182572" misc_feature 2257471..2258088 /gene="rhlE" /locus_tag="AGROH133_08032" /note="DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (...; Region: DEADc; cd00268" /db_xref="CDD:28928" misc_feature 2257606..2257620 /gene="rhlE" /locus_tag="AGROH133_08032" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28928" misc_feature 2257927..2257938 /gene="rhlE" /locus_tag="AGROH133_08032" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:28928" misc_feature 2258020..2258028 /gene="rhlE" /locus_tag="AGROH133_08032" /note="motif III; other site" /db_xref="CDD:28928" misc_feature 2258116..2258508 /gene="rhlE" /locus_tag="AGROH133_08032" /note="Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079" /db_xref="CDD:28960" misc_feature order(2258221..2258232,2258290..2258295,2258368..2258376) /gene="rhlE" /locus_tag="AGROH133_08032" /note="nucleotide binding region [chemical binding]; other site" /db_xref="CDD:28960" misc_feature order(2258392..2258394,2258455..2258457,2258467..2258469, 2258476..2258478) /gene="rhlE" /locus_tag="AGROH133_08032" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:28960" gene complement(2259032..2259940) /locus_tag="AGROH133_08033" /db_xref="GeneID:10268033" CDS complement(2259032..2259940) /locus_tag="AGROH133_08033" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="permease protein" /protein_id="YP_004279555.1" /db_xref="GI:325293691" /db_xref="GeneID:10268033" /translation="MTSQNPIARELLLLALLSTLWAASYTFIKIGVETIPPLTFIAAR TLIAGLLLLAVIRLRGLRLPRDFATWRLFFVQACINSVLPFTLIAWAEQSIDAGLAVI LNATTPIFTFLLTALIIRHEQVSGRKLFGTVAGMTGVCLIIGLDALNGAGEALWSQIA VLTAAFSYACAAIFSKNFRGLDPVMPAAGSLICGAVLLLPVSVIVDRPWTLSPSPASL TALVCLSVFSTALAFMVYFRLMQTLGSVGTTSQAYLRVPIGVAIGMVFLGEVPTPAMW VGLVCVIAGVLAMTLPSRRRSLAQGG" misc_feature complement(2259050..2259871) /locus_tag="AGROH133_08033" /note="putative DMT superfamily transporter inner membrane protein; Provisional; Region: PRK11272" /db_xref="CDD:183067" misc_feature complement(2259512..2259871) /locus_tag="AGROH133_08033" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" misc_feature complement(2259068..2259445) /locus_tag="AGROH133_08033" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene complement(2260104..2260493) /locus_tag="AGROH133_08044" /db_xref="GeneID:10268034" CDS complement(2260104..2260493) /locus_tag="AGROH133_08044" /note="DoxX; Predicted membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279556.1" /db_xref="GI:325293692" /db_xref="GeneID:10268034" /translation="MAILDNLSRYRPQALGALRIMTALLFISHGTQKLFGFPASQMDG SLPTMLLVAALLEAVGGILVLVGLFTRPVAFILSGQMAVAYFIAHGPKSFFPALNGGD AAILFCFIFLYLVFAGPGAFSVDERRA" misc_feature complement(2260110..2260493) /locus_tag="AGROH133_08044" /note="DoxX; Region: DoxX; cl00976" /db_xref="CDD:154119" gene complement(2260735..2261352) /locus_tag="AGROH133_08049" /db_xref="GeneID:10268035" CDS complement(2260735..2261352) /locus_tag="AGROH133_08049" /note="ErfK/YbiS/YcfS/YnhG; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279557.1" /db_xref="GI:325293693" /db_xref="GeneID:10268035" /translation="MSISRRGVLFGLPLLLAGCASSGIGQQRLNYAAKPDEKFPLPEM HLDKVKPELRRQEVAYDTAHPAGTVIVDTPARRLYYVLGDGRAMRYGVGVGRQGLALK GDAYIGRKSEWPSWTPTANMMRRDPRNLKYAGGMEGGPNNPLGARALYLYRGGNDTMF RLHGTNQPQSIGHAMSSGCIRMLNHDIIDLYSRVPVGSRVVVLQA" misc_feature complement(2260747..2261148) /locus_tag="AGROH133_08049" /note="L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734" /db_xref="CDD:190732" gene complement(2261431..2262327) /locus_tag="AGROH133_08051" /db_xref="GeneID:10268036" CDS complement(2261431..2262327) /locus_tag="AGROH133_08051" /note="Protein of unknown function DUF6, transmembrane" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279558.1" /db_xref="GI:325293694" /db_xref="GeneID:10268036" /translation="MSLDRLAPAIFVFLWSTGWVTAKYAVYYTGPLTFLCLRYLLAGA ILWAICRFSSIQWPERRIDVFRAILSGVFLHGLYLGMIWWAIGQGVPAAIGGIIAGLQ PLMTAVAARYMIGEKISPVQRAGLLLGFVGIAIAVLPKVMASGALGLSVPLYAVAVNV LGMTSVTYGTLYQKKYVHGGNIMAVATLQYVGALIVTVPFALLLEDGHVDWSLGLAAT LVWSVGAISIGAVALLLYLIRRGQVSRAASLIYLVPPLAAVEAALLFGETLTPAMIAG TVLAVTGVYLANRRPAAPVEAR" misc_feature complement(2261461..2261823) /locus_tag="AGROH133_08051" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene 2262811..2264220 /locus_tag="AGROH133_08062" /db_xref="GeneID:10268037" CDS 2262811..2264220 /locus_tag="AGROH133_08062" /note="Protein of unknown function DUF404, bacteria N-terminal; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279559.1" /db_xref="GI:325293695" /db_xref="GeneID:10268037" /translation="MAFDEMINADNAPRSPYENYNEWYSRQDRAHLIQKSKDAENIFR KTGITFAVYGHADSSEKLIPFDIIPRIISGREWRKLAQGIEQRVLALNAFLDDIYHKQ EIIRAGRIPREIIEKNVAFLPEMIGFTPPGGVYTHIVGTDIVRTGEDQFYVLEDNART PSGVSYMLENRETMMQMFPELFHENRVQRVEDYPYQLRQSLASLAPPGCTGKPRVAVL TPGIYNSAYYEHSFLADMMGVELVEGSDLRVMDGKVKMRTTRGYEAIDVLYRRVDDDF LDPLTFRPDSALGVPGIMDVYRAGNITIANAPGTGISDDKAIYSYMPEIVEFYTGRKP LLENVPTWRCSEPDSLKYVLDNLAELVVKEVHGSGGYGMLVGPTASKKERALFAEKLK ARPSNYIAQPTLSLSTVPIMVKNGIAPRHVDLRPYVLVSDKVKIIPGGLTRVALKQGS LVVNSSQGGGTKDTWVLED" misc_feature 2262811..2264217 /locus_tag="AGROH133_08062" /note="Uncharacterized conserved protein [Function unknown]; Region: COG2308" /db_xref="CDD:32462" misc_feature 2262874..2263629 /locus_tag="AGROH133_08062" /note="Domain of unknown function (DUF404); Region: DUF404; pfam04169" /db_xref="CDD:190893" misc_feature 2263783..2264214 /locus_tag="AGROH133_08062" /note="Domain of unknown function (DUF407); Region: DUF407; pfam04174" /db_xref="CDD:112964" gene 2264224..2265165 /locus_tag="AGROH133_08063" /db_xref="GeneID:10268038" CDS 2264224..2265165 /locus_tag="AGROH133_08063" /note="Protein of unknown function DUF403, bacteria; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279560.1" /db_xref="GI:325293696" /db_xref="GeneID:10268038" /translation="MLGRTANGLYWMFRYIERAENIARLIDAGLRVSLTRSGSGDEDW DGVLQSAGVHEAFLETREKVTAANAIDYLLRDKANPSSVMSCIEAGRNNARMVRTALT RETWEATNEFWIELKNILGRKLSHAELPQTIDVIKHRAGLVRGAFHGSMLRNDLYNFS RIGTFIERADNTARILDVKYYVLLPAVAHVGSSLDNAQWESILRSVSAHRSYGWVYDA EYKPANIADFLILNGRMPRSLAYCYEKITSNLNYIAEDYGEKHKAHETAESIRDSLRK TTIDRVMDEGLHEFLERFVNRNGQLGQEIMEGYRFYL" misc_feature 2264224..2265153 /locus_tag="AGROH133_08063" /note="Bacterial domain of unknown function (DUF403); Region: DUF403; cl00980" /db_xref="CDD:193994" gene 2265187..2266002 /locus_tag="AGROH133_08064" /db_xref="GeneID:10268039" CDS 2265187..2266002 /locus_tag="AGROH133_08064" /note="Bacterial transglutaminase-like N-terminal region; Transglutaminase-like enzymes, cysteine proteases" /codon_start=1 /transl_table=11 /product="transglutaminase domain-containing protein" /protein_id="YP_004279561.1" /db_xref="GI:325293697" /db_xref="GeneID:10268039" /translation="MRLKITHTTEYVYDEPMPYALQRLRLTPQTGPCQTVEDWDVSVD GATVEVSYDDHFGNRVALVETEGPQRRVKVVAGGLVITEDRAGMVGPHTGSAPLWLFL RETPLTKPGKLVRELAKASTGNSELERLHDLMEKINSKVEYVPGSTDTETTAELALEA GKGVCQDHAHILISAARLMGLPARYVSGYLMMEDVAEQTATHAWAEVHLQGLGWVGFD AANNICPDDRYVRIALGLCYRDCAPISGMRIGPAGETLNVSVTVQQSQSQSQS" misc_feature 2265190..2265432 /locus_tag="AGROH133_08064" /note="Bacterial transglutaminase-like N-terminal region; Region: Bact_transglu_N; pfam08379" /db_xref="CDD:149443" misc_feature 2265529..2265843 /locus_tag="AGROH133_08064" /note="Transglutaminase-like superfamily; Region: Transglut_core; cl10469" /db_xref="CDD:195969" gene 2266007..2266603 /locus_tag="AGROH133_08065" /db_xref="GeneID:10268040" CDS 2266007..2266603 /locus_tag="AGROH133_08065" /EC_number="2.1.1.-" /note="methyltransferase type 11; SAM-dependent methyltransferases" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="YP_004279562.1" /db_xref="GI:325293698" /db_xref="GeneID:10268040" /translation="MAGRDDETIGFYTDNAGAYTSRGQTADLPHLEKFLTRLPKGATI LELGCGGGQDSEFMLAAGFDVRPTDGTPEIAKAAETRLGIPVATLLFEDIGDVETYDG VWANACLLHVPRPALSGIIRRIHTALKQGGVFYASFKAGEAEGRDTFGRYYNYPSKTW LEDLYGHFAWAGVEIEARHGSGYDKLPTDWLHVTATKP" misc_feature 2266133..2266420 /locus_tag="AGROH133_08065" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(2266145..2266165,2266202..2266207,2266280..2266288, 2266322..2266324) /locus_tag="AGROH133_08065" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 2266686..2267150 /locus_tag="AGROH133_08066" /db_xref="GeneID:10268041" CDS 2266686..2267150 /locus_tag="AGROH133_08066" /note="GCN5-related N-acetyltransferase; Predicted acetyltransferase" /codon_start=1 /transl_table=11 /product="acetyltransferase, GNAT family" /protein_id="YP_004279563.1" /db_xref="GI:325293699" /db_xref="GeneID:10268041" /translation="MYSISDYRDCQSHGPIIAERVWTAWWQDSGLQVGDVAEHLKDMV NPHALPTGFVAHDDKGYVGSAFLIHCDLEERPQYLPWVAALWVEENSRRSGVARALMQ AATQRAAELGHDTSYLCCQRRLETYYTNCGWTVLERGVGKHDLTVLTYSTKT" misc_feature 2266842..2267042 /locus_tag="AGROH133_08066" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301" /db_xref="CDD:173926" misc_feature order(2266938..2266946,2266974..2266979) /locus_tag="AGROH133_08066" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 2267191..2267601 /locus_tag="AGROH133_08067" /db_xref="GeneID:10268042" CDS 2267191..2267601 /locus_tag="AGROH133_08067" /note="Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="Glyoxalase/bleomycin resistance protein/dioxygenase" /protein_id="YP_004279564.1" /db_xref="GI:325293700" /db_xref="GeneID:10268042" /translation="MKPPAALMETAIYANDLDAAEAFYRDVFGLEVVRRLPGQFVFFK CGRQMLLVFDPQQSRTATSNNPIPRHGATGQGHFCFYAKDKSEVDDWKARFEELGIPI EHYHRWPNDSYSVYIRDPAGNSVEVGEGRLWGFE" misc_feature 2267209..2267571 /locus_tag="AGROH133_08067" /note="This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_13; cd08354" /db_xref="CDD:176702" misc_feature order(2267215..2267217,2267419..2267421,2267566..2267568) /locus_tag="AGROH133_08067" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176702" gene 2267626..2268279 /gene="gpmB" /locus_tag="AGROH133_08068" /db_xref="GeneID:10268043" CDS 2267626..2268279 /gene="gpmB" /locus_tag="AGROH133_08068" /EC_number="5.4.2.1" /note="Phosphoglycerate mutase family" /codon_start=1 /transl_table=11 /product="Fructose-2,6-bisphosphatase" /protein_id="YP_004279565.1" /db_xref="GI:325293701" /db_xref="GeneID:10268043" /translation="MKNIFVVTHTQSVHHVENKVGGWYDTELTPKGKADAQATAEKLV ALIGNASVEIFSSDLLRASQTAAIIAEHLKSPFETTDGLREISYGSAGGLPQEWLDAR QIPAPHHDRMDHRGGIADGETRRELAERVYRTVDTIISRPCPTQIIVTHGFALTFVIA AWIKMPIDSVGYVSFPASSGSITHLRQDDYWQNRGVIALADVSHLKTNPGMTSRGGR" misc_feature 2267632..2268195 /gene="gpmB" /locus_tag="AGROH133_08068" /note="Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067" /db_xref="CDD:132718" misc_feature order(2267647..2267652,2267806..2267808,2268076..2268081) /gene="gpmB" /locus_tag="AGROH133_08068" /note="catalytic core [active]" /db_xref="CDD:132718" gene complement(2268322..2269317) /gene="gguC" /locus_tag="AGROH133_08069" /db_xref="GeneID:10268044" CDS complement(2268322..2269317) /gene="gguC" /locus_tag="AGROH133_08069" /note="Protein of unknown function DUF1238; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="GguC protein, involved in sugar transport" /protein_id="YP_004279566.1" /db_xref="GI:325293702" /db_xref="GeneID:10268044" /translation="MLISQIKDASGKITVAVREEGGQAHAVNGAQSVYALAMEAANGG KSLADVVSAHGLGDAVDLEKAYAEGRFLPPITHPDPAHLHLTGTGLTHLGSAATRDSM HKKTTEAAEESLTDSMKMFRMGLENGKPKAGEKGVQPEWFYKGNGYVAAAPGAALTSP SFALDGGEEPEMAGIYVISDKGEPVRIGFAVSNEFSDHVTERINYLYLAHSKLRPASF GPEIRVGVAPSDIRGTSRIRRGDKVIFEKPFVSGEDNMSHTFANLEYHHFKYGLFRAP GDVHVHMFGTATLSFAEGIKPEAGDVFEIEAAGFGLPLRNPLAVNAEEEITVRQI" misc_feature complement(2268325..2269317) /gene="gguC" /locus_tag="AGROH133_08069" /note="Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421" /db_xref="CDD:196225" gene complement(2269433..2270629) /gene="gguB" /locus_tag="AGROH133_08070" /db_xref="GeneID:10268045" CDS complement(2269433..2270629) /gene="gguB" /locus_tag="AGROH133_08070" /note="Bacterial inner-membrane translocator; ABC-type xylose transport system, permease component" /codon_start=1 /transl_table=11 /product="sugar ABC transporter transmembrane protein" /protein_id="YP_004279567.1" /db_xref="GI:325293703" /db_xref="GeneID:10268045" /translation="MSSANTTNEESNVISVGSYIRSNIREYGMLIALVAIMVFFQFYT GGILFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQW GMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIG PFPTDFQIISTGFLPDIGGIEGLNTTSMILTLVITVVLFYLAWRRRVVNVKHGIDVEP FGFFIVQNLLISGAILFLGYQLSTYRGLPNVLIVMLVLIALYSFVTRRTTIGRRVYAM GGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAA CFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDV YNKNKG" misc_feature complement(<2270012..2270449) /gene="gguB" /locus_tag="AGROH133_08070" /note="Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579" /db_xref="CDD:119321" misc_feature complement(2269457..>2269897) /gene="gguB" /locus_tag="AGROH133_08070" /note="Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579" /db_xref="CDD:119321" misc_feature complement(2269733..2269789) /gene="gguB" /locus_tag="AGROH133_08070" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119321" gene complement(2270626..2272164) /gene="gguA" /locus_tag="AGROH133_08082" /db_xref="GeneID:10268046" CDS complement(2270626..2272164) /gene="gguA" /locus_tag="AGROH133_08082" /EC_number="3.6.3.17" /note="ABC transporter related; ABC-type sugar transport system, ATPase component" /codon_start=1 /transl_table=11 /product="sugar ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279568.1" /db_xref="GI:325293704" /db_xref="GeneID:10268046" /translation="MANTILEMRNITKTFPGVKALENVNLKVKEGEIHALVGENGAGK STLMKVLSGVYPAGTYEGEIHYEGAVRNFRAINDSEDIGIIIIHQELALVPLLSIAEN IFLGNEVASGGVINWQQTFNRTRELLKKVGLKESPETLITDIGVGKQQLVEIAKALSK SVKLLILDEPTASLNESDSEALLNLLIEFRKQGMTSIIITHKLNEVRKVADQITVLRD GMTVKTLDCHQEEISEDVIIRNMVGRDLEDRYPPRDVPIGETILEVKNWNAYHQQHRD RKVLHDINVTVRKGEVVGIAGLMGAGRTEFAMSVFGKSYGHKITGDVLIDGKPVDVST VRKAIDAGLAYVTEDRKHLGLVLNDNILHNTTLANLAGVSKASVIDDIKEMKVASDFR TRLRIRSSGIFQETVNLSGGNQQKVVLSKWLFSNPDVLILDEPTRGIDVGAKYEIYTI INQLAADGKGVLMISSEMPELLGNCDRIYVMNEGRIVAELPKGEASQESIMRAIMRSG EKNS" misc_feature complement(2270644..2272164) /gene="gguA" /locus_tag="AGROH133_08082" /note="xylose transporter ATP-binding subunit; Provisional; Region: PRK13549" /db_xref="CDD:184134" misc_feature complement(2271493..2272149) /gene="gguA" /locus_tag="AGROH133_08082" /note="This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and...; Region: ABC_Carb_Monos_I; cd03216" /db_xref="CDD:72975" misc_feature complement(2272030..2272053) /gene="gguA" /locus_tag="AGROH133_08082" /note="Walker A/P-loop; other site" /db_xref="CDD:72975" misc_feature complement(order(2271562..2271564,2271658..2271663, 2271898..2271900,2272027..2272035,2272039..2272044)) /gene="gguA" /locus_tag="AGROH133_08082" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72975" misc_feature complement(2271898..2271909) /gene="gguA" /locus_tag="AGROH133_08082" /note="Q-loop/lid; other site" /db_xref="CDD:72975" misc_feature complement(order(2271706..2271720,2271862..2271876)) /gene="gguA" /locus_tag="AGROH133_08082" /note="ABC transporter signature motif; other site" /db_xref="CDD:72975" misc_feature complement(2271658..2271675) /gene="gguA" /locus_tag="AGROH133_08082" /note="Walker B; other site" /db_xref="CDD:72975" misc_feature complement(2271640..2271651) /gene="gguA" /locus_tag="AGROH133_08082" /note="D-loop; other site" /db_xref="CDD:72975" misc_feature complement(2271556..2271576) /gene="gguA" /locus_tag="AGROH133_08082" /note="H-loop/switch region; other site" /db_xref="CDD:72975" misc_feature complement(2270707..2271393) /gene="gguA" /locus_tag="AGROH133_08082" /note="This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (; Region: ABC_Carb_Monos_II; cd03215" /db_xref="CDD:72974" gene complement(2272255..2273319) /gene="chvE" /locus_tag="AGROH133_08083" /db_xref="GeneID:10268047" CDS complement(2272255..2273319) /gene="chvE" /locus_tag="AGROH133_08083" /note="xylF: D-xylose ABC transporter, substrate-binding protein; ABC-type xylose transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="sugar binding protein" /protein_id="YP_004279569.1" /db_xref="GI:325293705" /db_xref="GeneID:10268047" /translation="MKSIISLMAACAIGAASFAAPAFAQDKGSVGIAMPTKSSARWID DGNNIVKQLQEAGYTTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK QAGQQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSIVDKLGLKDGKGPFNIEL FGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDN LLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSII AGEQYSTIFKDTRELAKVTVGMVNAVLQGKEPEVNDTKTYENGVKVVPSYLLKPVAVT KDNYKQVLVDGGYYTADQLK" misc_feature complement(2272330..2273235) /gene="chvE" /locus_tag="AGROH133_08083" /note="Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_ABC_xylose_binding; cd01538" /db_xref="CDD:107251" misc_feature complement(order(2272462..2272464,2272522..2272524, 2272801..2272803,2272975..2272977,2273197..2273199)) /gene="chvE" /locus_tag="AGROH133_08083" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107251" gene 2273354..2273503 /locus_tag="AGROH133_08086" /db_xref="GeneID:10268048" CDS 2273354..2273503 /locus_tag="AGROH133_08086" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279570.1" /db_xref="GI:325293706" /db_xref="GeneID:10268048" /translation="MLRCTIKFMPSEEEAALRPFRSRNCEMEQMPLLPGIPQIVLNPY NCQIE" gene 2273574..2274578 /gene="gbpR" /locus_tag="AGROH133_08087" /db_xref="GeneID:10268049" CDS 2273574..2274578 /gene="gbpR" /locus_tag="AGROH133_08087" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004279571.1" /db_xref="GI:325293707" /db_xref="GeneID:10268049" /translation="MSNQKVYEQTQTADALFVFEDNPLLRAGLKMSHLRMLVMIEEHG QVSAAAAAMNMTQPAASRMLSEMEAIVKSPLCQRASRGVVLTKFGEALARRARTILLE LREASRELNQMKSGSGGSVYIGAVTAPAISLVVPAIRRAMDTYPGIEINVQVESSNVL ARELLAARHDFIIGRIPDDFDPGLFSIHEIGIERACLVVREGHPLLHGEPVTLQDLSG YDWVFQPPGALLRRTMEDVFLTHGVAMPRNVINTPSVVLTLALICNTDAIAPIAQDMA EFVAGQQADIGRTRILPTDFELVVKPYSIITTKGRVLPPSARLLYDLVLDESRKLTGF " misc_feature 2273658..2274545 /gene="gbpR" /locus_tag="AGROH133_08087" /note="pca operon transcription factor PcaQ; Region: TF_pcaQ; TIGR02424" /db_xref="CDD:162852" misc_feature 2273664..2273843 /gene="gbpR" /locus_tag="AGROH133_08087" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2273931..2274545 /gene="gbpR" /locus_tag="AGROH133_08087" /note="The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold; Region: PBP2_GbpR; cd08435" /db_xref="CDD:176126" misc_feature order(2273976..2273981,2273985..2273990,2273997..2273999, 2274009..2274011,2274015..2274035,2274318..2274335, 2274351..2274356,2274360..2274365) /gene="gbpR" /locus_tag="AGROH133_08087" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176126" gene 2274653..2275129 /locus_tag="AGROH133_08090" /db_xref="GeneID:10268050" CDS 2274653..2275129 /locus_tag="AGROH133_08090" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279572.1" /db_xref="GI:325293708" /db_xref="GeneID:10268050" /translation="MLFGQSVFESVVERLRQEKEDESAEPMPPTGHRIVGFSSGFVVD TYPDAPQPGNASLDAYLAFLPEPVALAEPQPEPQPEPMPAHLEKTSLADVSAELAIHE TDTAATLAEKRRAFARLNHPDGVRPEFRHNATLRMTAANLLIDQAIRMLRTREHFQ" gene complement(2275165..2275443) /locus_tag="AGROH133_08091" /db_xref="GeneID:10268051" CDS complement(2275165..2275443) /locus_tag="AGROH133_08091" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279573.1" /db_xref="GI:325293709" /db_xref="GeneID:10268051" /translation="MLIIDTSHPLYRRLWVRLLIVGFCAAWSVIEFVNREFFWGTVVG GVAVYAAYELLLKFKPASEENAAGKADATRDDSDEPVESAPTDRNDAG" gene complement(2275632..2276138) /locus_tag="AGROH133_08094" /db_xref="GeneID:10268052" CDS complement(2275632..2276138) /locus_tag="AGROH133_08094" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_004279574.1" /db_xref="GI:325293710" /db_xref="GeneID:10268052" /translation="MALQLAHSNGPRAEKAESGGTQAEHLNAIDYGLLTTAIGYHLRH SQLAVANGFSDVLAEMGLRPADFSVLVIVGGNPGLKQSDVAEALGIQRANFVAIVDSM ESKGLLVRRRSEEDRRVHFLDMTDEGSSLLERLSDAWRDREEKLIDRIGGKKARDQLL ALLGRLRD" misc_feature complement(2275689..2275973) /locus_tag="AGROH133_08094" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 2276661..2276737 /locus_tag="AGROH133_08095" /db_xref="GeneID:10268053" tRNA 2276661..2276737 /locus_tag="AGROH133_08095" /product="tRNA-Arg" /anticodon=(pos:2276695..2276697,aa:Arg) /db_xref="GeneID:10268053" gene 2277025..2277264 /locus_tag="AGROH133_08096" /db_xref="GeneID:10268054" CDS 2277025..2277264 /locus_tag="AGROH133_08096" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279575.1" /db_xref="GI:325293711" /db_xref="GeneID:10268054" /translation="MSDAEKIIVVQFKKGRGGIVPGEMRQASNAASAEKIASAMAARH IGVAAYAVTVDEESGSMTNPRLLVSHGQISDLMPD" gene complement(2277418..2279430) /gene="mcpA6" /locus_tag="AGROH133_08097" /db_xref="GeneID:10268055" CDS complement(2277418..2279430) /gene="mcpA6" /locus_tag="AGROH133_08097" /note="Bacterial chemotaxis sensory transducer, methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004279576.1" /db_xref="GI:325293712" /db_xref="GeneID:10268055" /translation="MSFLPNTSGTGKERHPFQELPVSFLQNARIRTKILSLILPLCIV GLGATAFMATRYKEADTLYSEFIASDNAALVELARANRNLVALAYRAYQVMAYDANAA EINVAKQAYIDSKRELLERLGNVKTVFPEESAAVDTLIAQSQSIAQITDKAVELGMAN RNAESAVQLAHADVSIQRTSAIITALLDKLAKGVATGSDDLTDQTNSTILTSLVVVGI SFAAGIILALFVASRGITTPIARLRERMVSLAGGDTAAEIDGMDRKDEVGQMAVAVQV FRESAIERIRLEQETEANRSLSEKERIAREQQKAKEAADVKFAVDNLATGLSKLSDGD VSYRIGQPFTATLDGVRNDFNMSAEKLQSALTRVAQNAGGIGAGANEIKSAADDLAKR TEQQAAAVEETAAALEEITTTVKDSTKRAQEAGLIVSRAKAGAEQSGEVVRRAVVAME QISKSANEISNIIGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRS ANAAKEIKALITTSNDQVQQGVQLVGDTGKALATIVSEVQEINRHVVSIVESAQEQSS GLQQINTAVNQMDQDTQKNAAMVEETNAASHNLAKEVASLNQLLAQFKLADTAYQQKS QPAPVRNAGGNDRYVASPVRALGRKLASAFSGNAAVDTSKDDWQEF" misc_feature complement(<2278477..>2278947) /gene="mcpA6" /locus_tag="AGROH133_08097" /note="TMAO reductase sytem sensor TorS; Region: TMAO_torS; TIGR02956" /db_xref="CDD:163083" misc_feature complement(2278591..2278797) /gene="mcpA6" /locus_tag="AGROH133_08097" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(2277586..2278701) /gene="mcpA6" /locus_tag="AGROH133_08097" /note="Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840" /db_xref="CDD:31182" misc_feature complement(2277586..2278140) /gene="mcpA6" /locus_tag="AGROH133_08097" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(2279789..2280703) /locus_tag="AGROH133_08100" /db_xref="GeneID:10268056" CDS complement(2279789..2280703) /locus_tag="AGROH133_08100" /EC_number="2.1.1.-" /note="Homocysteine S-methyltransferase; Homocysteine/selenocysteine methylase (S- methylmethionine-dependent)" /codon_start=1 /transl_table=11 /product="S-methyltransferase" /protein_id="YP_004279577.1" /db_xref="GI:325293713" /db_xref="GeneID:10268056" /translation="MGTIRILDGGMSRELQRLGAELKQPEWSALALINSPDIVRQVHQ EFIEAGADVVTTNSYALVPFHIGEERFQKDGESLIALSGRLAREAADASGRDVLVAGS LPPIFGSYEPQNFDATRVQDYLKVLVDNLGSFVDVWLGETLSLIAEGEAVREAVAATG KPFWISFTLNDDAAATGGGEPALRSGETVKAAAEWAAQSGAAALLFNCSKPEIMKAAV ETASAVFAEKGVSLEIGVYANAFEGEQGDSAANEGLHGTRTDLTDDVYSRFACSWADA GATMIGGCCGIGAAHIHTVATALRRAAA" misc_feature complement(2279795..2280703) /locus_tag="AGROH133_08100" /note="Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]; Region: MHT1; cl14105" /db_xref="CDD:187229" misc_feature complement(2279867..2280694) /locus_tag="AGROH133_08100" /note="Homocysteine S-methyltransferase; Region: S-methyl_trans; pfam02574" /db_xref="CDD:111469" gene complement(2280724..2281413) /gene="occM" /locus_tag="AGROH133_08101" /db_xref="GeneID:10268057" CDS complement(2280724..2281413) /gene="occM" /locus_tag="AGROH133_08101" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type amino acid transport system, permease component" /codon_start=1 /transl_table=11 /product="octopine transport system permease protein occM" /protein_id="YP_004279578.1" /db_xref="GI:325293714" /db_xref="GeneID:10268057" /translation="MDFSWIAKYWPLLLSGAWQTLALLVISVSIGFLLAIGLAFAQVS GGRVTKILARAYCTFFRGTPLLIQLWLLYYGVGSFLPMIPGLRQSFMWPVLREGFFFA AVSFTLNYAAYEAEVLRGALLAVPKGELEAGRAFGMGRFTLIRRIWLPRAIRIALPTI AGEVVMQLKATPLAFTVTVMDLYAVAYKVRQDTLLVYEPLIVVTVFYLILTAIIARCF GLIEQQVPVRR" misc_feature complement(2280748..2281389) /gene="occM" /locus_tag="AGROH133_08101" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature complement(2280772..2281365) /gene="occM" /locus_tag="AGROH133_08101" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(2280778..2280783,2280790..2280795, 2280799..2280804,2280811..2280816,2280844..2280849, 2280886..2280891,2280898..2280909,2280928..2280930, 2280937..2280942,2280982..2280984,2281033..2281035, 2281042..2281047,2281057..2281059,2281063..2281068, 2281075..2281077,2281081..2281083,2281087..2281092, 2281195..2281197,2281201..2281206,2281213..2281242, 2281246..2281257,2281285..2281287,2281300..2281305, 2281312..2281317)) /gene="occM" /locus_tag="AGROH133_08101" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2280892..2280909,2281195..2281239)) /gene="occM" /locus_tag="AGROH133_08101" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(2280814..2280816,2280844..2280846, 2280853..2280855,2280889..2280891,2281105..2281107, 2281195..2281197)) /gene="occM" /locus_tag="AGROH133_08101" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(2280961..2280963,2280973..2280978, 2280994..2281032)) /gene="occM" /locus_tag="AGROH133_08101" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(2281426..2282148) /locus_tag="AGROH133_08106" /db_xref="GeneID:10268058" CDS complement(2281426..2282148) /locus_tag="AGROH133_08106" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type arginine transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004279579.1" /db_xref="GI:325293715" /db_xref="GeneID:10268058" /translation="MASLETTLQLLSPYPPGWGGTLLKGAASTLAISAGAYLIGIVIG LAGALGKLSGNRPLGLLLNLYTTAIRAVPELILIVGLYYAGTDGLNRLLQLAGLPPLE VNGFVAAVAVLGFVQGAYMTEVLRGAILAIPNGQIEAARAFGMSPALRFRRVVLPALL PNALPGLANLWLAVTKDSALVAVVGYQELALATRLAGASTKQYFLFFLAAALLYLAIT LVSNLVFSLLERRVRRGQPALA" misc_feature complement(2281438..2282112) /locus_tag="AGROH133_08106" /note="ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215" /db_xref="CDD:33942" misc_feature complement(2281444..2282100) /locus_tag="AGROH133_08106" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene complement(2282171..2282941) /gene="aotJ" /locus_tag="AGROH133_08112" /db_xref="GeneID:10268059" CDS complement(2282171..2282941) /gene="aotJ" /locus_tag="AGROH133_08112" /note="Bacterial extracellular solute-binding protein, family 3; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /codon_start=1 /transl_table=11 /product="Lysine-arginine-ornithine-binding periplasmic protein" /protein_id="YP_004279580.1" /db_xref="GI:325293716" /db_xref="GeneID:10268059" /translation="MKFFATLLAGTAFAVSAFTASADVRFGIMNESYPPFFAKDASGK WQGWEIDLMDAVCAEMKEKCSIVELSWDGLIPALQTKKFDVIWSSMSNTEEREKVIDF TNKYYNTPSKLIGAKDGKPGAAPEDVKGKTIGIQVATIQSEYYKKYFAAVADEKTYQT LDEAFQDLAAGRIDYVFGDSLVLDAFVKSDAGKDCCADMGNVADDKEILGLGVSGGLR KDDTELKNKLNAALAAVRASGKYDEITRKYFSFDIYGK" misc_feature complement(2282195..2282872) /gene="aotJ" /locus_tag="AGROH133_08112" /note="Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497" /db_xref="CDD:189575" misc_feature complement(2282195..2282848) /gene="aotJ" /locus_tag="AGROH133_08112" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature complement(order(2282405..2282407,2282522..2282524, 2282654..2282656,2282729..2282731,2282843..2282845)) /gene="aotJ" /locus_tag="AGROH133_08112" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:29040" misc_feature complement(order(2282426..2282428,2282444..2282446, 2282456..2282458)) /gene="aotJ" /locus_tag="AGROH133_08112" /note="membrane-bound complex binding site; other site" /db_xref="CDD:29040" misc_feature complement(2282306..2282323) /gene="aotJ" /locus_tag="AGROH133_08112" /note="hinge residues; other site" /db_xref="CDD:29040" gene complement(2282986..2283762) /gene="nocP1" /locus_tag="AGROH133_08114" /db_xref="GeneID:10268060" CDS complement(2282986..2283762) /gene="nocP1" /locus_tag="AGROH133_08114" /EC_number="3.6.3.21" /note="ABC transporter related; ABC-type polar amino acid transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279581.1" /db_xref="GI:325293717" /db_xref="GeneID:10268060" /translation="MADTGACALEADDIHKSFGTHEVLKGVSLKAHKGDVISIIGSSG SGKSTFLRCINFLETPDRGRVIVNGEEIAMKIGRDGKAVPKSWRQVEKLRTGLGMVFQ NFNLWAHRTVLENVIEAPVHVLGVKRQEAVEKAEALLNKVGLYDKKNAYPAFLSGGQQ QRAAIARALCVEPAVMLFDEPTSALDPELVGEVLKVIRDLAEEGRTMLLVTHEMRFAR DVSTEVMFLHQGRVEEAGPPAQVFGNPVSARCREFTGALA" misc_feature complement(2282989..2283756) /gene="nocP1" /locus_tag="AGROH133_08114" /note="ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; Region: HisP; COG4598" /db_xref="CDD:34233" misc_feature complement(2283067..2283738) /gene="nocP1" /locus_tag="AGROH133_08114" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature complement(2283619..2283642) /gene="nocP1" /locus_tag="AGROH133_08114" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature complement(order(2283127..2283129,2283223..2283228, 2283457..2283459,2283616..2283624,2283628..2283633)) /gene="nocP1" /locus_tag="AGROH133_08114" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature complement(2283457..2283468) /gene="nocP1" /locus_tag="AGROH133_08114" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature complement(2283271..2283300) /gene="nocP1" /locus_tag="AGROH133_08114" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature complement(2283223..2283240) /gene="nocP1" /locus_tag="AGROH133_08114" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature complement(2283205..2283216) /gene="nocP1" /locus_tag="AGROH133_08114" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature complement(2283121..2283141) /gene="nocP1" /locus_tag="AGROH133_08114" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene complement(2283924..2285339) /gene="exoQ" /locus_tag="AGROH133_08115" /db_xref="GeneID:10268061" CDS complement(2283924..2285339) /gene="exoQ" /locus_tag="AGROH133_08115" /note="O-antigen polymerase; Lipid A core - O-antigen ligase and related enzymes" /codon_start=1 /transl_table=11 /product="Exopolysaccharide production protein exoQ" /protein_id="YP_004279582.1" /db_xref="GI:325293718" /db_xref="GeneID:10268061" /translation="MEKGRENYLMDAAHDEQASVAWRNALFYVTFFYFTVGFSPYISL SSTYLGSAMAAGSNLLNQLTAIILLISFVAFMAKERSSSIVFTPRLLMLAIFGWYIFT SVVGGAPVFSLRRLAMCAIICVLASCFLQLPRTERHFTTLLATCVLIILFLCYFGVAV LPSRSIHQASDALEPLLAGNWRGVFRHKNEAASIMAVLMIVGIYLCKRWSLIGGLAVL LLSLIFLVKSGGKTALGLMPIIIATGWFIVGWPRWRYAVVTLLLGTFAVVIVGTTVDP VFSQMLTKLGIDASFTGRTDIWTVSIDYIRQSPIVGYGYQAFWRSDTLMTSFTENNTW ATTAPDSHNGYFDLVLGGGVPGLILVLTWICLMPLRDLGKMDEATRKSPLTKLYVGVW LYVLLYGFLETMFFLSTGFVWFFLVVAVMGLRLQANASLVEDEAQAEPQLALTGSNAA SVARRIRGKSRRSLLADDILK" misc_feature complement(2284062..2285210) /gene="exoQ" /locus_tag="AGROH133_08115" /note="Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]; Region: RfaL; COG3307" /db_xref="CDD:33116" misc_feature complement(2284299..2284658) /gene="exoQ" /locus_tag="AGROH133_08115" /note="O-Antigen ligase; Region: Wzy_C; cl04850" /db_xref="CDD:194980" gene 2285771..2286910 /locus_tag="AGROH133_08125" /db_xref="GeneID:10268062" CDS 2285771..2286910 /locus_tag="AGROH133_08125" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279583.1" /db_xref="GI:325293719" /db_xref="GeneID:10268062" /translation="MDDSNNEGATQRPVQPAAPGVRPMRRDDLPAVEVVLNSAFKKTG LDRNFDFGAYVETLFFSSPVFDPEYGSVVYDAGESGVTSVILAVPMRFVANGKPITAR LLCAFASKGKLGALGAARLSRGMRATKHDMLFSDTASPVSADHWLAIGGSMLPMESLQ WHKALKPFSAIALRMPRRSQVVKSRPGLMALGFVDRILRSWKKGIRPNEVAGTTVRPV DFETFRRNALKMIERFSVRPEWSHEEFHWLIEMSKTNGTLGELSSLAIENAEGRIIGA ALYFGQAGRTAYVLNLVCDAGRENDVLGALFRHFDDENYAHVTGMSQPFLMNALYRQN HVTFHHRGYFCMATRDEALRDRALAGDIYIGGLSSESWSKLITDF" gene complement(2286948..2288027) /locus_tag="AGROH133_08126" /db_xref="GeneID:10268063" CDS complement(2286948..2288027) /locus_tag="AGROH133_08126" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279584.1" /db_xref="GI:325293720" /db_xref="GeneID:10268063" /translation="MTAEMPLPPVQKALQINLHPFDAPHAALTVPHQLRVWGGQVDRI LLTVDTGQVGAGRYKGNGFEAASKRLFDMLEEMQANYPHLYVDIADYSDAARSAVAET FFSRSPVPYPAKAFDGGPFHVYFHGLKRANARYVLHMDSDMMFGGGSQSWFNEAIALQ KANPDALCITPFSGPPTVRGDLDISRHVGMPGVKNIPEPRKLPSRVPTWRFATVSTRL FMIDMDRFAKRIGSLELLRPDVKRRIRSYAYNQQPVSMPAEEVLSDNMMRIGVYRLDF LGTGKGMYSLHPPYRSPEFYAALGSIVERIEKGDVPEGQLGDFDINGSMVDWSSALAA KTRSKRYAKALRHLISANVQRFTGA" gene complement(2288030..2289100) /gene="xynA" /locus_tag="AGROH133_08127" /db_xref="GeneID:10268064" CDS complement(2288030..2289100) /gene="xynA" /locus_tag="AGROH133_08127" /EC_number="3.2.1.8" /note="glycoside hydrolase, catalytic core; Beta-1,4-xylanase" /codon_start=1 /transl_table=11 /product="endo-1,4-beta-xylanase" /protein_id="YP_004279585.1" /db_xref="GI:325293721" /db_xref="GeneID:10268064" /translation="MRIGRRNFLGGAVSAGLLHAMAGQGVAATRKTSTKIAPYGAAIY LPDLTADSRIGEAVVKYCSRITPVTEMKWEVMRPSAEVFDFAAADALANFARQNKLTM HGHPLIWYASNAPWLASIGSGAKVEKLMETHIVKVMERYKDVIHSWDVVNEPIPDVPG NVRSRRDAWYYGAGPDAIKKAFDIAHSVDPKAQLVLNEYDVEFAVEKSLAKRAAFRNL ILELLEKGAPINAIGLQGHLRGGWPIAKDELAAFTKEMRSYGLAVLVTELDAMDQTLP APEAERDMLINGQVRDFLEAACEGGPLSSITTWGISDQYTWIRWAYPRRDGTANRPLP LDWSFNEKPMMAVINEFRNRGA" misc_feature complement(2288033..2289079) /gene="xynA" /locus_tag="AGROH133_08127" /note="Glycosyl hydrolase family 10; Region: Glyco_hydro_10; cl01495" /db_xref="CDD:194149" gene 2289381..2290292 /gene="exoU" /locus_tag="AGROH133_08129" /db_xref="GeneID:10268065" CDS 2289381..2290292 /gene="exoU" /locus_tag="AGROH133_08129" /EC_number="2.4.-.-" /note="glycosyl transferase, family 2; glycosyltransferases involved in cell wall biogenesis" /codon_start=1 /transl_table=11 /product="UDP-hexose transferase" /protein_id="YP_004279586.1" /db_xref="GI:325293722" /db_xref="GeneID:10268065" /translation="MVSVSIVIPVRNGERYIVEAIESVLSQGKTVCEVLVVDDGSTDT TAQKVQSFADPRVKLLARPQGRQGVSAVRNFGLSQARGEWTMFLDADDRVKPGAIAAL CAGISGPDVVAVYGDYERIDENGAKIGRRNLIRRREKPDGFILQPLLGGNFIVNGGIM LVKTRIFQDFGGFDETLRYAEDWYGWCRLAASGRFAYLPGRHVLDYRVHRTSVMMNRL LTFRDCEPAIEAVFSDPAIVAAIAPQELRRLRRKSENHMNAYTVAQAFRARRYREAFS ALADTFVNRPRQSLRAVVFSAAALAGI" misc_feature 2289393..2290007 /gene="exoU" /locus_tag="AGROH133_08129" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" misc_feature order(2289405..2289407,2289411..2289413,2289489..2289491, 2289645..2289647,2289651..2289653) /gene="exoU" /locus_tag="AGROH133_08129" /note="active site" /db_xref="CDD:132997" gene 2290301..2291245 /gene="exoM" /locus_tag="AGROH133_08130" /db_xref="GeneID:10268066" CDS 2290301..2291245 /gene="exoM" /locus_tag="AGROH133_08130" /EC_number="2.-.-.-" /note="glycosyl transferase, family 2; glycosyltransferases involved in cell wall biogenesis" /codon_start=1 /transl_table=11 /product="UDP-hexose transferase" /protein_id="YP_004279587.1" /db_xref="GI:325293723" /db_xref="GeneID:10268066" /translation="MSEIVPEAVVCIPSFRRPAGLQKTLNSLAAQKVDFPFAIVVVDN DGVGQAGLAVARAFFAESGMMGQTLVEPTQGNCYAINTAFRTARQSYPSAQWFLMIDD DEAASPVWLAEMVSAAKSFGVDIVGGPVDREFDAPAPKAVLAHPLFGSIEAPTGVVDQ IHGSGNCLISRRVFETLEKPEFDVRFNFLGGGDMDFFTRCRKAGFKFAWNAQALIIEY VPENRMAPRWIMERSLRTGIINYSIDRARRPGLKGGLLLAAKNVISLCLSLVRAVSAF LKTGALLPATHPPLMSIGRVMASLGITLTPYKAPAKKA" misc_feature 2290328..>2290687 /gene="exoM" /locus_tag="AGROH133_08130" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761" /db_xref="CDD:132997" misc_feature order(2290337..2290339,2290343..2290345,2290424..2290426, 2290601..2290603,2290607..2290609) /gene="exoM" /locus_tag="AGROH133_08130" /note="active site" /db_xref="CDD:132997" misc_feature <2290535..2290966 /gene="exoM" /locus_tag="AGROH133_08130" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:197438" gene complement(2291280..2291528) /locus_tag="AGROH133_08131" /db_xref="GeneID:10268067" CDS complement(2291280..2291528) /locus_tag="AGROH133_08131" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279588.1" /db_xref="GI:325293724" /db_xref="GeneID:10268067" /translation="MVITSISLFVYGIGTVTSLAMTYIEGARRDKDWDFYRVTGIILC FFWPVLVPLLILAAVFSSFTSQKRHVNGISLRREKTLS" gene complement(2291777..2292619) /gene="exoT" /locus_tag="AGROH133_08134" /db_xref="GeneID:10268068" CDS complement(2291777..2292619) /gene="exoT" /locus_tag="AGROH133_08134" /note="glycosyl transferase WecB/TagA/CpsF; Teichoic acid biosynthesis proteins" /codon_start=1 /transl_table=11 /product="UDP-hexose transferase" /protein_id="YP_004279589.1" /db_xref="GI:325293725" /db_xref="GeneID:10268068" /translation="MPILDTGQNMTGRDVPHAEGPGTHWPVVPLAALPITDATIEETA EDFILRAERERAAGAKPFYSTSANGQVIALCHQDKEFEALLRQADQIHADGMSLVIFS RQFCVRALRERVATTDLVHAVARRAEATGTRFYFLGGSEEVNRAAVEEMQKLYPRLVF AGRRNGYFRPGDEEAILADIVASQTDILWVGFGIPLEQRFVARNLDRLSDIAVIKTCG GLFDFLAGKNSRAPQWMQDMGLEWLYRAMLEPRRLGKRYLLTNPIAIYSLLKHRYGFG AGKV" misc_feature complement(2291849..2292367) /gene="exoT" /locus_tag="AGROH133_08134" /note="The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common...; Region: Glyco_transf_WecG_TagA; cd06533" /db_xref="CDD:119439" gene 2292833..2293042 /locus_tag="AGROH133_08135" /db_xref="GeneID:10268069" CDS 2292833..2293042 /locus_tag="AGROH133_08135" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279590.1" /db_xref="GI:325293726" /db_xref="GeneID:10268069" /translation="METISIDNRGDFGLWAIERAKEIVANEASDLAVSVRDGDETGIR DAGNALGAAIAAALLEVYDGLMSEE" gene complement(2293062..2294444) /gene="exoP" /locus_tag="AGROH133_08137" /db_xref="GeneID:10268070" CDS complement(2293062..2294444) /gene="exoP" /locus_tag="AGROH133_08137" /note="Lipopolysaccharide biosynthesis; Uncharacterized protein involved in exopolysaccharide biosynthesis" /codon_start=1 /transl_table=11 /product="succinoglycan biosynthesis transport protein" /protein_id="YP_004279591.1" /db_xref="GI:325293727" /db_xref="GeneID:10268070" /translation="MPGLKYIDRIGVDEVLGWLRAGIVWIVLAIIICVAAALAYAYMT PPRYTAYTDIVVNPSNLNVVNDGVFSPNQQRDTQILEVESKLRTVTSRNVLARVVDEL KLDEDPEFISPPPLARLKAFFSPKPEDGDNKVGALRSLGERVAAERDPRSFVVTLAVW TNDPDKSVTVSKVMVKAFESELFQTTSDSSLRIVDDLKKRLEEMRQNVTVAEKRVADF RRENGLQENNGQLVSNLASGELNAQVLAAQQRVIQEESRLKQMQAAIAQNRTQSDAIF DSQTMNTIRAQYSTLQQQIGAMTLTYGARHPRLATAGAERDMLERGIADEAQRILLAA KTNVAEARSSLDALRLKAVAERANVFTDNEAQVRLRDLERDANSAAAIYETYLNRSRQ IAEQQTIDSTNVRVISQPVAPNSRSWPPGKLIFLIAGGVGGLFLGLGIAIALGLLGFL RRTDHAERYA" misc_feature complement(2293185..2294441) /gene="exoP" /locus_tag="AGROH133_08137" /note="Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]; Region: GumC; COG3206" /db_xref="CDD:33019" misc_feature complement(2293935..>2294321) /gene="exoP" /locus_tag="AGROH133_08137" /note="Chain length determinant protein; Region: Wzz; cl01623" /db_xref="CDD:186458" gene 2294604..2294783 /locus_tag="AGROH133_08139" /db_xref="GeneID:10268071" CDS 2294604..2294783 /locus_tag="AGROH133_08139" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279592.1" /db_xref="GI:325293728" /db_xref="GeneID:10268071" /translation="MGSGGGRRFFIQRTCLLMSRLLKPVHQPIQLERTTKKACNRWFS SSPEPLLTGKSRYNG" gene 2294836..2296356 /gene="noeK" /locus_tag="AGROH133_08140" /db_xref="GeneID:10268072" CDS 2294836..2296356 /gene="noeK" /locus_tag="AGROH133_08140" /EC_number="5.4.2.8" /note="Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I" /codon_start=1 /transl_table=11 /product="Phosphomannomutase" /protein_id="YP_004279593.1" /db_xref="GI:325293729" /db_xref="GeneID:10268072" /translation="MKEMIDLNGSIRFFLALYFCIIHLNLKDFIETEFGMSLKFGTSG LRGLSVDLKGKASAVYATAFARHLLTSGQAKAGDPILVARDFRDSSPDVSATCIAALK KAGLTPLDCGTVPTPALALYGLSLKAGALMITGSHIPADRNGIKFYRPDGEIDKQDET AIAALAAEVEAEGINDEAATADDHSAIAAELFYERNAALLPEKALSGLKIGVYQHSTV ARDLFVDVLAHYGAEVVSLGRSETFIPVDTEAVSPETLELLKKWAPEHGLDAIVSADG DGDRPLLADENGVPLRGDLIGLITANFLDAGVVVTPVTSNSGIEASGSFKVIRTRVGS PFVIAGMAQALAEGNNGVMGFEANGGLLTASTFTLNGKPLSPLPTRDSFLPILAVLLL SAEQKKPLSQIASAYNLPVAAADRLENFAQEKSAALMTHLRASRDNLETFLAPVGTVK ALSDIDGLRVALTDGSTIHFRPSGNAPEMRCYVEAANQDEAETLLSKGLDLIRNFG" misc_feature 2294929..2296350 /gene="noeK" /locus_tag="AGROH133_08140" /note="Phosphomannomutase [Carbohydrate transport and metabolism]; Region: {ManB}; COG1109" /db_xref="CDD:31306" misc_feature 2294950..2296332 /gene="noeK" /locus_tag="AGROH133_08140" /note="ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In...; Region: ManB; cd03088" /db_xref="CDD:100090" misc_feature order(2294956..2294958,2294962..2294964,2294971..2294973, 2295241..2295249,2295271..2295273,2295658..2295660, 2295664..2295666,2295670..2295675,2295775..2295777, 2295829..2295837,2295901..2295903,2295907..2295909, 2295913..2295915,2296246..2296248,2296252..2296260, 2296273..2296275) /gene="noeK" /locus_tag="AGROH133_08140" /note="active site" /db_xref="CDD:100090" misc_feature order(2294962..2294964,2295241..2295243,2295673..2295675, 2295775..2295777,2295829..2295831,2295835..2295837, 2295901..2295903,2295907..2295909,2295913..2295915, 2296246..2296248,2296252..2296260,2296273..2296275) /gene="noeK" /locus_tag="AGROH133_08140" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100090" misc_feature order(2295241..2295243,2295658..2295660,2295664..2295666, 2295670..2295672) /gene="noeK" /locus_tag="AGROH133_08140" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100090" gene 2296492..2296893 /locus_tag="AGROH133_08141" /db_xref="GeneID:10268073" CDS 2296492..2296893 /locus_tag="AGROH133_08141" /note="Bacterial-like globin; Truncated hemoglobins" /codon_start=1 /transl_table=11 /product="globin-like protein" /protein_id="YP_004279594.1" /db_xref="GI:325293730" /db_xref="GeneID:10268073" /translation="MSGETITLYEAIGGDATVRALTRRFYELMDTLPEAAHCRAIHPA DLSGSESKFYDYLTGYLGGPPVYVEKHGHPMLRRRHFVAPIGPAERDEWLLCFRRAMD ETIENAKLRDIIWGPVERLAFHMQNQEANNP" misc_feature 2296510..2296875 /locus_tag="AGROH133_08141" /note="Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is...; Region: Trunc_globin; cd00454" /db_xref="CDD:29978" misc_feature order(2296525..2296527,2296540..2296545,2296552..2296557, 2296564..2296566,2296660..2296665,2296672..2296674, 2296771..2296773,2296780..2296782,2296792..2296794, 2296801..2296803,2296834..2296836,2296843..2296845) /locus_tag="AGROH133_08141" /note="apolar tunnel; other site" /db_xref="CDD:29978" misc_feature order(2296567..2296569,2296612..2296617,2296636..2296638, 2296648..2296650,2296657..2296662,2296690..2296692, 2296708..2296710,2296714..2296716,2296723..2296725, 2296729..2296731,2296738..2296740,2296759..2296761, 2296768..2296770,2296852..2296854,2296864..2296866) /locus_tag="AGROH133_08141" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:29978" misc_feature order(2296573..2296575,2296582..2296587,2296777..2296779, 2296786..2296788,2296798..2296806) /locus_tag="AGROH133_08141" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29978" gene 2296890..2297255 /locus_tag="AGROH133_08142" /db_xref="GeneID:10268074" CDS 2296890..2297255 /locus_tag="AGROH133_08142" /note="Protein of unknown function DUF423; Uncharacterized small membrane protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279595.1" /db_xref="GI:325293731" /db_xref="GeneID:10268074" /translation="MTTERLRALILLLGSLLGAAGVMLAAAATHTGETYMLGNASAMA LAHAPVLVALHIGADRIRTAIPAGLILGFGTAVFVGDLVTRHFSGHSLFPYAAPLGGL GMIAGWLVLCAGAFLKPRG" misc_feature <2296974..2297252 /locus_tag="AGROH133_08142" /note="Protein of unknown function (DUF423); Region: DUF423; cl01008" /db_xref="CDD:186299" gene complement(2297263..2297550) /locus_tag="AGROH133_08148" /db_xref="GeneID:10268075" CDS complement(2297263..2297550) /locus_tag="AGROH133_08148" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279596.1" /db_xref="GI:325293732" /db_xref="GeneID:10268075" /translation="MSDERNNFKDAEQAVAEACRVELHKMADQGADPALTEMYEVVGE RERRNRAAADGGNVLAFPYLRTRQPGEKPFFEIGDAAQRGGNILSFRWKRH" gene complement(2297531..2297956) /locus_tag="AGROH133_08149" /db_xref="GeneID:10268076" CDS complement(2297531..2297956) /locus_tag="AGROH133_08149" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279597.1" /db_xref="GI:325293733" /db_xref="GeneID:10268076" /translation="MARKEKKKAERGGKQGKGAPQPEKDVAEQQLSGPKSFLYVGGRD CQVAHLRQIASNFGAELIHHDGGLREAVSRIDTVLPSVDCVFCPIDCISHDACLRVKS GCKKFGKTFIPLRNGSKSSLERALQTMNERTLNDERRAQ" misc_feature complement(2297573..2297851) /locus_tag="AGROH133_08149" /note="Uncharacterized protein conserved in bacteria (DUF2325); Region: DUF2325; cl01811" /db_xref="CDD:154601" gene complement(2298109..2298750) /locus_tag="AGROH133_08150" /db_xref="GeneID:10268077" CDS complement(2298109..2298750) /locus_tag="AGROH133_08150" /note="Transcriptional regulator, YcdC, C-terminal; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_004279598.1" /db_xref="GI:325293734" /db_xref="GeneID:10268077" /translation="MAIPRAAKTQKRTRIQEEKQEAILEAALSVFSTNGFRGSTIDQI AEAAGMSKPNVLYYFRTKEAMHRALIERVLDTWLDPLRAFDAEGNPESEIRSYIRRKL EMSRDFPRESRLFANEILQGAPHIEDELKGPLKQLVDEKAEVIRVWIKAGRMAKCDPY HLIFSIWSTTQHYADFDVQVRAVLGDKNGGEGRFEDAARHLEQLFMGGLKINN" misc_feature complement(2298124..2298720) /locus_tag="AGROH133_08150" /note="pyrimidine utilization regulatory protein R; Region: RutR; TIGR03613" /db_xref="CDD:132652" misc_feature complement(2298544..2298684) /locus_tag="AGROH133_08150" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" misc_feature complement(2298121..2298543) /locus_tag="AGROH133_08150" /note="YcdC-like protein, C-terminal region; Region: TetR_C_3; pfam08362" /db_xref="CDD:116943" gene 2299013..2300260 /gene="amaB" /locus_tag="AGROH133_08152" /db_xref="GeneID:10268078" CDS 2299013..2300260 /gene="amaB" /locus_tag="AGROH133_08152" /EC_number="3.5.1.6" /note="allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; Acetylornithine deacetylase/Succinyl- diaminopimelate desuccinylase and related deacylases" /codon_start=1 /transl_table=11 /product="allantoate amidohydrolase" /protein_id="YP_004279599.1" /db_xref="GI:325293735" /db_xref="GeneID:10268078" /translation="MAAGKNLTVNGDRLWDSLMDMAKIGPGIAGGNNRRTLTDEDAEG RSLFKRWCEAAGLTMGVDRMGTMFATRPGEDPDALPVYIGSHLDTQPTGGKFDGVLGV LAGLEVVRSLNDLNIKTKHPVVVTNWSNEEGARFAPAMLASGVFAGIHDLDYAYSRTD TDGKTYGDELKRIGWLGEEEVGARKMHAYFEYHIEQGPILEAEGKQIGVVTHGQGLWW LEVTLTGKEAHTGSTPMAMRVNAGLAAARILEKVQEVAMAHQPGAVAGVGQMIFTPNS RNVLPGKVVFTIDLRTPSQAKLDNMRAIFEREVPVIAEELGVGCSIEAIGHFDPVTFD PVLVGRVRAAAEKLGYSHMDIISGAGHDACWTARVAPSTMIFCPCVDGLSHNEAEDIS SEWAAAGCDVLLHAVLETAEIVQ" misc_feature 2299022..2300254 /gene="amaB" /locus_tag="AGROH133_08152" /note="allantoate amidohydrolase; Reviewed; Region: PRK12893" /db_xref="CDD:183818" misc_feature 2299052..2300236 /gene="amaB" /locus_tag="AGROH133_08152" /note="M20 Peptidase beta-alanine synthase, an amidohydrolase; Region: M20_bAS; cd03884" /db_xref="CDD:193505" misc_feature order(2299268..2299270,2299301..2299306,2299403..2299408, 2299427..2299429,2299589..2299591,2299598..2299600, 2299658..2299660,2299664..2299666,2299883..2299885, 2300087..2300092,2300165..2300167) /gene="amaB" /locus_tag="AGROH133_08152" /note="active site" /db_xref="CDD:193505" misc_feature order(2299268..2299270,2299301..2299303,2299403..2299408, 2299589..2299591,2300165..2300167) /gene="amaB" /locus_tag="AGROH133_08152" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:193505" misc_feature order(2299598..2299609,2299616..2299621,2299664..2299666, 2299697..2299711,2299715..2299717,2299724..2299726, 2299736..2299741,2299745..2299753,2299757..2299765, 2299769..2299774,2299778..2299783,2299802..2299825, 2299835..2299840,2299844..2299855,2299877..2299879, 2299883..2299885,2300084..2300086) /gene="amaB" /locus_tag="AGROH133_08152" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:193505" gene 2300257..2301714 /gene="dht" /locus_tag="AGROH133_08153" /db_xref="GeneID:10268079" CDS 2300257..2301714 /gene="dht" /locus_tag="AGROH133_08153" /EC_number="3.5.2.-" /note="catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; Dihydroorotase and related cyclic amidohydrolases" /codon_start=1 /transl_table=11 /product="phenylhydantoinase" /protein_id="YP_004279600.1" /db_xref="GI:325293736" /db_xref="GeneID:10268079" /translation="MTATIIKNGTIVTADLTYKADVKIEGGKITEIGPDLTGGTVLDA TGCYVMPGGIDPHVHLEMPFMGTYSADDFESGTRAALAGGTTMVVDFCLPDPGQSLLD ALQRWDNKATRANCDYSFHMAVTWWGEQVFNEMKTVVQEKGINSFKHFMAYKGALMVN DDEMFASFSRCAELGAIPFVHAENGDIVAQMQEKLMAEGNVGPEAHAYSRPPSVEGEA TNRAIIIADMAGAPLYVVHTSCEQAHEAIRRARQNGMRVYGEPLIQHLILDESEYANA DWDHAARRVMSPPFRNRQHQDSLWAGLASGSLQCVATDHCAFTTDQKRFGLGDFRKIP NGTGGLEDRMPLLWTHGVATGRLTMNEFVAVTSTNIAKILNIYPKKGAILVGSDADIV VWDPAREKTIRAENQQSAIDYNVFEGQKVKGLPRFTLSRGIVSIEESTVKTQEGHGTF VARDPYPAVSKALSTWKELVAPRKVERSGIPASGV" misc_feature 2300266..2301633 /gene="dht" /locus_tag="AGROH133_08153" /note="phenylhydantoinase; Validated; Region: PRK08323" /db_xref="CDD:181388" misc_feature 2300266..2301600 /gene="dht" /locus_tag="AGROH133_08153" /note="D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like...; Region: D-HYD; cd01314" /db_xref="CDD:30057" misc_feature order(2300299..2300304,2300308..2300310,2300347..2300352, 2300743..2300745,2300806..2300808,2300815..2300817, 2300824..2300826,2300893..2300895,2300905..2300907, 2300917..2300919,2300926..2300928,2301007..2301012, 2301016..2301021,2301370..2301372,2301385..2301387, 2301400..2301402) /gene="dht" /locus_tag="AGROH133_08153" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:30057" misc_feature order(2300425..2300427,2300431..2300433,2300698..2300700, 2300797..2300799,2300965..2300967,2301196..2301198) /gene="dht" /locus_tag="AGROH133_08153" /note="active site" /db_xref="CDD:30057" gene 2301717..2302154 /locus_tag="AGROH133_08154" /db_xref="GeneID:10268080" CDS 2301717..2302154 /locus_tag="AGROH133_08154" /note="NUDIX hydrolase, core; NTP pyrophosphohydrolases including oxidative damage repair enzymes" /codon_start=1 /transl_table=11 /product="NTP pyrophosphohydrolase, MutT family" /protein_id="YP_004279601.1" /db_xref="GI:325293737" /db_xref="GeneID:10268080" /translation="MSTDPKREIVIAAAVLLNARRQMLVVRKRGTTQFMQPGGKIDPG ETPEQALHRELAEEIGLTLPENAARYEGIFREEAANETGAEVVAHAFVAQLNIDVTPQ AEIEEVRWLDLDAASNLPIAKLTETRMLPLARAALTESGNKPR" misc_feature 2301744..2302091 /locus_tag="AGROH133_08154" /note="Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_31; cd04690" /db_xref="CDD:72925" misc_feature 2301831..2301899 /locus_tag="AGROH133_08154" /note="nudix motif; other site" /db_xref="CDD:72925" gene 2302151..2302945 /locus_tag="AGROH133_08155" /db_xref="GeneID:10268081" CDS 2302151..2302945 /locus_tag="AGROH133_08155" /EC_number="3.6.3.31" /note="nitrate ABC transporter ATP-binding proteins C and D; ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" /codon_start=1 /transl_table=11 /product="nitrate ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279602.1" /db_xref="GI:325293738" /db_xref="GeneID:10268081" /translation="MNQASSYSVVSARNLGLTFETGDGPVHALSNVDLEVGKGEFVSF IGPSGCGKTTFLRVIADLEKHTSGDITVNGTTPENARKDRSYGYVFQAAALYPWRTIE NNIALPLEIMGYTKAEQRERIDRTLDLVNLSGFSKKYPWQLSGGMQQRASIARALAFD ADLLLMDEPFGALDEIVRDHLNEQLLKLWDTTGKTICFVTHSIPEAVYLSTKIVVMSP RPGRVTDIIESTLPRERPLEIRETPEFLAIAHRVREGLKAGHSYEG" misc_feature 2302172..2302939 /locus_tag="AGROH133_08155" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116" /db_xref="CDD:31313" misc_feature 2302178..2302843 /locus_tag="AGROH133_08155" /note="NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars...; Region: ABC_NrtD_SsuB_transporters; cd03293" /db_xref="CDD:73052" misc_feature 2302286..2302309 /locus_tag="AGROH133_08155" /note="Walker A/P-loop; other site" /db_xref="CDD:73052" misc_feature order(2302295..2302300,2302304..2302312,2302421..2302423, 2302649..2302654,2302751..2302753) /locus_tag="AGROH133_08155" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73052" misc_feature 2302412..2302423 /locus_tag="AGROH133_08155" /note="Q-loop/lid; other site" /db_xref="CDD:73052" misc_feature 2302577..2302606 /locus_tag="AGROH133_08155" /note="ABC transporter signature motif; other site" /db_xref="CDD:73052" misc_feature 2302637..2302654 /locus_tag="AGROH133_08155" /note="Walker B; other site" /db_xref="CDD:73052" misc_feature 2302661..2302672 /locus_tag="AGROH133_08155" /note="D-loop; other site" /db_xref="CDD:73052" misc_feature 2302739..2302759 /locus_tag="AGROH133_08155" /note="H-loop/switch region; other site" /db_xref="CDD:73052" gene 2302988..2303863 /locus_tag="AGROH133_08156" /db_xref="GeneID:10268082" CDS 2302988..2303863 /locus_tag="AGROH133_08156" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" /codon_start=1 /transl_table=11 /product="nitrate ABC transporter transmembrane protein" /protein_id="YP_004279603.1" /db_xref="GI:325293739" /db_xref="GeneID:10268082" /translation="MTLLRHRVLPILTVLLAILIVWHLCVIYLNMPFVRDQANRAGQT PSFMELLPQTFAQERPVLPAPHQIIAELWDTTVNKAITSKRSLVYHAGVTLSATLLGF AIGAVLGILLAVAIIHNRAMDRSVMPWIIASQTIPILAVAPMIIVVLNSIGISGLLPK ALISTYLSFFPIVVGMVKGLRSPETIQLDLMHTYNASPAQIFWKLRWPSALPYLFTSL KIAIAIALVGAIVGELPTGAVAGLGARLLSGSYYGQTVQIWAALFMAAGVAAILVSII GIAHAAVLKRMGARP" misc_feature 2303300..2303848 /locus_tag="AGROH133_08156" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 2303860..2304732 /locus_tag="AGROH133_08163" /db_xref="GeneID:10268083" CDS 2303860..2304732 /locus_tag="AGROH133_08163" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" /codon_start=1 /transl_table=11 /product="nitrate ABC transporter transmembrane protein" /protein_id="YP_004279604.1" /db_xref="GI:325293740" /db_xref="GeneID:10268083" /translation="MTNPVWFIGAILFWLAAWASNEWLVRHTFASQSAKRMSRMAVPL LFGLAILALWEGVVRGFSVPPILLPAPSAILARLLGSLPILWADFRQTFLKSVLTGYV LGCGLGFLVAILIDRSPFLQRGLLPIGNFVSALPVVGIAPIMVMWFGFDWQSKVAVVV IMTFFPMLVNTVQGLAASSHMERDLMRTYAAGWGQTLLKLRLPAAWPFIFNALKINST LALIGAIVAEFFGTPIVGMGFRISAEMGRSNVDMVWAEIAVAALAGSGFYGLVALIER AVTFWHPSVRGGRT" misc_feature 2303944..2304717 /locus_tag="AGROH133_08163" /note="ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600" /db_xref="CDD:30945" misc_feature 2304178..2304693 /locus_tag="AGROH133_08163" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene 2304754..2305746 /locus_tag="AGROH133_08171" /db_xref="GeneID:10268084" CDS 2304754..2305746 /locus_tag="AGROH133_08171" /note="ABC transporter substrate-binding protein (nitrate/sulfonate/taurine/bicarbonate); ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" /codon_start=1 /transl_table=11 /product="nitrate/sulfonate/taurine/bicarbonate ABC transporter substrate-binding protein" /protein_id="YP_004279605.1" /db_xref="GI:325293741" /db_xref="GeneID:10268084" /translation="MKMKLASMLLAGASLLSAFEAQAADKITLQLKWVTQAQFAGYYV AKDKGFYEAEGLDVDIKPGGPDIAPAQVLAGGGADVIVDWMPSALATREKGVPLVNIA QPFKTSGMMLTCLKETGITKPEDFKGKTLGVWFFGNEYPFLSWMAHLKIPTTGGADGV TVLKQGFNVDPLLQKQAACISTMTYNEYWQVIDAGIKPEELVTFKYEDEGVATLEDGL YVLEDKLKDAKFKQDMVKFVRASMKGWKWAEEHPDDAAGIVLENDASGAQTEKHQKRM MGEVAKLTAGSKGALDKADYERTVKTLLGGGSDPVITKEPTGAYTTEITDAALK" misc_feature 2304859..2305518 /locus_tag="AGROH133_08171" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2306112..2307305 /locus_tag="AGROH133_08173" /db_xref="GeneID:10268085" CDS 2306112..2307305 /locus_tag="AGROH133_08173" /note="Membrane-fusion protein" /codon_start=1 /transl_table=11 /product="HlyD family secretion protein" /protein_id="YP_004279606.1" /db_xref="GI:325293742" /db_xref="GeneID:10268085" /translation="MQHKVTFNRFVFLLLSATALPFSAVAEGEVPEPVKQQNLPSIIV AHAATRDLVDRIIATGTIRPVDEIYVQPLVDGLSIDELNVDIGDRVEANAVLAVLSSD SLLLQKSQLEANRAKAQAAVAQSKAQVLEAEANKADALRQRDRAAKLGQSGSGSVSET EKTEAAAQVAQARLDAAKQTVSAGEADIKVVDAQIDDINLKLTRTGVKTPVTGIVSAK NAKVGAIASGAGNPLFTIIKDGAIELVADLSETDIQRVKAGQKAFLTVAGGAKKIEGK VRLVSPTVDPATRLGSVHVVLPTDSPARSGMYASAEIIVKETNALALPLSAVTSGREG STTRKVEGDIVKQVKIETGIEDSGFIEIVSGLAAGDKVVEKAGAFVRDGDRIRPVEAQ TAASN" misc_feature 2306241..2307278 /locus_tag="AGROH133_08173" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" gene 2307319..2310639 /locus_tag="AGROH133_08175" /db_xref="GeneID:10268086" CDS 2307319..2310639 /locus_tag="AGROH133_08175" /note="AcrB/AcrD/AcrF family; Cation/multidrug efflux pump" /codon_start=1 /transl_table=11 /product="Acriflavin resistance protein" /protein_id="YP_004279607.1" /db_xref="GI:325293743" /db_xref="GeneID:10268086" /translation="MNFSAWSIRNPIAPLLGFALLMFLGIQAFNALPITRFPNIDVPV VAVTVTQSGASPSELEMQVTKEIEDAVAAISGVDEIQSTVTDGQSLTTVVFRIEKPTE EAVQDVKDAIDKIRSDLPSDIEVPVVSKIDVEGQAIQTFAVSSPNMTLEELSWFVDDT IKRSLQGKSGIGKVDRYGGADREVRVSLSPEKLDAYGITASEVNGQLRGTNIDLGSGR GQVGGNEQTIRTLGDTRDVTQLANTTIALSNGRFVKLAELGTVTDTYEEQKSFSRFNG NPAVTFAVFRSKGASEVSVAKTVAESLDQVRKDHPDVAIQMVDDAVYFTYGNYTAALD TLIEGAVLAVIVVLLFLRNWRATLIAAVALPLSAIPTFWIMDIMGFSLNLVSFLALTL ATGILVDDAIVEIENIARHIKMGKTPYRASLEAADEIGLAVIATSFTIIAVFVPVSFM PGIPGQYFIQFGLTVAFSVFFSLAVARLITPLMAAYLMRAEDAMDDHADNDGWLMKAY TRMVSATTSKWWARYLTLVGAIGFLIASVMLLSQVPGSFLPPDDASRVTLSVELPPNA TLDETDRTTAEIFHAIRDINGVESVFILGGASPKGDLELRRATVNVILQHIDHSLLKT LVNKGLGSLPLVGQYLPKIEEKGRVRPQWDVERDIFAKVRSIPDVRIIKLNDRAEREL SFNFLSSNEKDLNDAVGILESRLRASPILANVSSEGALPRPELQIRPRKDEIARLGIT PQQISQTVRVATIGDIDAQLTKISLDDRQIPIRVQASIDTRRDLATIRALKVKTASGS LVPLYSVADIDYSEGPSSIKRNDRNRVVSIGSDVPFGTALDTSTAEFKRIVSETELPA SVRLAESGDAKVQGEMQQGFVNAMLLGLLLVLVVLILLFKDIIQPFTILFSLPLAIGG VAVALIITQNALSMPVLIGILMLMGIVTKNAILLVDFAIEMRRHGMERVHAMVEAGRK RARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGIIVSTVLSLIVVPAFFLI MDDLSRLLAHLFGRFVGKKEEEEESLSNEKLSEIARENSLALSSLEARVAGMEKGSGE KSGDKGSNILRLPPLAAE" misc_feature 2307322..2310420 /locus_tag="AGROH133_08175" /note="Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841" /db_xref="CDD:31183" gene 2310974..2311663 /gene="sinR" /locus_tag="AGROH133_08190" /db_xref="GeneID:10268087" CDS 2310974..2311663 /gene="sinR" /locus_tag="AGROH133_08190" /note="Cyclic nucleotide-binding domain; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases" /codon_start=1 /transl_table=11 /product="regulator of biofilm formation, Fnr family" /protein_id="YP_004279608.1" /db_xref="GI:325293744" /db_xref="GeneID:10268087" /translation="MDVNKTVKLSNRDRNILLRVPLIGIADEAAALKLMEAATFTNLN ARHVLFKEGEAAQYFYCVLSGYVRLYRLDRHGREADVRVSGPGDTFNECLIFGSDSYR YSAQAAESCTVARFELARIRSLVDQEPAIAKAVMRCLSNSLLGTMDCIANDRLQTAPQ RVAHYLINQGPRDATSFSLRLPFQKSLLAGKLGLAPEALSRAFSALKKAGVTVRGRIV QVNDVAALKQI" misc_feature 2311019..2311639 /gene="sinR" /locus_tag="AGROH133_08190" /note="cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:31008" misc_feature 2311037..2311381 /gene="sinR" /locus_tag="AGROH133_08190" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:28920" misc_feature order(2311244..2311249,2311274..2311282) /gene="sinR" /locus_tag="AGROH133_08190" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:28920" misc_feature order(2311340..2311348,2311358..2311366) /gene="sinR" /locus_tag="AGROH133_08190" /note="flexible hinge region; other site" /db_xref="CDD:28920" misc_feature 2311508..2311636 /gene="sinR" /locus_tag="AGROH133_08190" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene complement(2311738..2312562) /locus_tag="AGROH133_08192" /db_xref="GeneID:10268088" CDS complement(2311738..2312562) /locus_tag="AGROH133_08192" /note="Metallo-beta-lactamase superfamily; Zn-dependent hydrolases, including glyoxylases" /codon_start=1 /transl_table=11 /product="metal dependent hydrolase" /protein_id="YP_004279609.1" /db_xref="GI:325293745" /db_xref="GeneID:10268088" /translation="MTTPLRFGPYDVSRFVDGVYKAPVGHLIHRQGADALAAALARHE GETVDMDVNCFVLSGPDGISLIDTGCGTAWGPTYGHARAGMIAAGIQPDDVSRVILTH IHGDHALGLIDGDRPYFPNADIWVPEADLAFFTSEDARKKLPPARQGAFDIAARLLDI CGAMLRPIPTGRIAEGMEAIAMPGHTPGHTGYLIGNGDDRLLLWGDVLHVSALQADDP GIGFVYDIDSETAYSTRLDALTQVADHGWLVSGGHLGGFFRVEREGDRFRFVPQPV" misc_feature complement(2311804..2312412) /locus_tag="AGROH133_08192" /note="Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446" /db_xref="CDD:193822" gene complement(2312566..2313177) /gene="ureG" /locus_tag="AGROH133_08193" /db_xref="GeneID:10268089" CDS complement(2312566..2313177) /gene="ureG" /locus_tag="AGROH133_08193" /note="[NiFe]-hydrogenase/urease maturation factor, Ni(2+)-binding; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase" /codon_start=1 /transl_table=11 /product="urease accessory protein ureG" /protein_id="YP_004279610.1" /db_xref="GI:325293746" /db_xref="GeneID:10268089" /translation="MKSGNGPLRVGIGGPVGSGKTALTEKLCKAMSADYSVAVVTNDI YTKEDAEALVRMQALPSERIVGVETGGCPHTAIREDATINLQAIAGLNARFPDLDVVF IESGGDNLAATFSPDLADITIYVISVCQGEEIPRKGGPGITRSDLLVINKKDLAPYVG ADLTVMDSDATRMRNAMPFVFTDMKRGEGVDRIVGFLKEQGGL" misc_feature complement(2312584..2313159) /gene="ureG" /locus_tag="AGROH133_08193" /note="Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras...; Region: Ras_like_GTPase; cl10444" /db_xref="CDD:195960" gene complement(2313284..2313955) /gene="ureF" /locus_tag="AGROH133_08194" /db_xref="GeneID:10268090" CDS complement(2313284..2313955) /gene="ureF" /locus_tag="AGROH133_08194" /note="Urease accessory protein UreF" /codon_start=1 /transl_table=11 /product="uease accessory protein ureF" /protein_id="YP_004279611.1" /db_xref="GI:325293747" /db_xref="GeneID:10268090" /translation="MSEDRGVAALLRLMAWMSPAFPVGGFSYSGGLEKAVEDRRVSDA AGLYGWVEVLLRSGSLWNDAVFLADAWRNGTDAVALSEAADLARALAGSAERYRETVL LGDAFVAAAGAWPHAVLELLPKEVPYPVAIGAVAAGHGVPLRETVAAFLHAGVSQIVS AGIRLGVAGQKDGVAILAASEATIGEMAARAVQSTLDDLGSATVIADTATMRHEMQGT RLFRS" misc_feature complement(2313287..2313946) /gene="ureF" /locus_tag="AGROH133_08194" /note="Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]; Region: UreF; COG0830" /db_xref="CDD:31172" misc_feature complement(2313410..2313838) /gene="ureF" /locus_tag="AGROH133_08194" /note="UreF; Region: UreF; pfam01730" /db_xref="CDD:145075" gene complement(2313959..2314465) /gene="ureE" /locus_tag="AGROH133_08195" /db_xref="GeneID:10268091" CDS complement(2313959..2314465) /gene="ureE" /locus_tag="AGROH133_08195" /note="Nickel metallochaperone UreE" /codon_start=1 /transl_table=11 /product="Urease accessory protein UreE" /protein_id="YP_004279612.1" /db_xref="GI:325293748" /db_xref="GeneID:10268091" /translation="MDHPMLRVTSYHPAGTPADEPSGYVTLAHDQRHLRRKLLHLQND EMVMLDLKEAVLFAHGDLLVVENGDLVEVRAADEKLFEIKAKDRLHLIELAWHLGNRH LSAQIEEERILILRDHVIRAMLEGLGATVRDVEEPFQPARGAYHAHGGHSHGHGHGHD HGQHHDHG" misc_feature complement(2314040..2314453) /gene="ureE" /locus_tag="AGROH133_08195" /note="Urease accessory protein UreE [Posttranslational modification, protein turnover, chaperones]; Region: UreE; COG2371" /db_xref="CDD:32518" misc_feature complement(2314052..2314450) /gene="ureE" /locus_tag="AGROH133_08195" /note="UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The C-...; Region: UreE; cd00571" /db_xref="CDD:29664" misc_feature complement(order(2314139..2314141,2314157..2314162, 2314166..2314171,2314175..2314183)) /gene="ureE" /locus_tag="AGROH133_08195" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29664" misc_feature complement(order(2314115..2314117,2314160..2314162)) /gene="ureE" /locus_tag="AGROH133_08195" /note="catalytic residues [active]" /db_xref="CDD:29664" gene complement(2314604..2315140) /locus_tag="AGROH133_08196" /db_xref="GeneID:10268092" CDS complement(2314604..2315140) /locus_tag="AGROH133_08196" /note="Redoxin" /codon_start=1 /transl_table=11 /product="Peroxiredoxin" /protein_id="YP_004279613.1" /db_xref="GI:325293749" /db_xref="GeneID:10268092" /translation="MLGKKVPAVTFRTRVRDEAVGGPNPFRWQDMTSDDYFKGKKVVL FSLPGAFTPTCSTYQLPDFEKLAGEFRALGVDEIYCLSVNDAFVMNAWAKGQNLENVK VIPDGSGEFTRKMGMLVAKDNLGFGMRSWRYAAVINDGLVEQWFEEEGYCDNSDTDPY GVSSPQNILENLKSRAAA" misc_feature complement(2314631..2315134) /locus_tag="AGROH133_08196" /note="Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5...; Region: PRX5_like; cd03013" /db_xref="CDD:48562" misc_feature complement(order(2314745..2314747,2314976..2314978, 2314985..2314987)) /locus_tag="AGROH133_08196" /note="catalytic triad [active]" /db_xref="CDD:48562" misc_feature complement(order(2314754..2314756,2314817..2314822, 2314880..2314882,2314886..2314888,2314982..2314984)) /locus_tag="AGROH133_08196" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48562" gene complement(2315309..2315977) /locus_tag="AGROH133_08197" /db_xref="GeneID:10268093" CDS complement(2315309..2315977) /locus_tag="AGROH133_08197" /note="Conserved hypothetical protein CHP02117" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279614.1" /db_xref="GI:325293750" /db_xref="GeneID:10268093" /translation="MLRFITRWIGGGLLLIILLLVLGTVVPRPFFADETSGVRDREIL LLSNPIHTDIALPVDDDLRRVFSELQEGGIAVNHPAAAYLVFGWGGRSFYIQTPTWAD LKPMPVVRSLTLDQSVMHVDVTGDFPADLAGVKRLRISEAGYQRLVAGIRTSFLRDNG KVQLIPGASYSLTDGFFEANGWFNALAGCNTWSAAMLRQAGIRTGWWTPLPPLLRWSV ALHN" misc_feature complement(2315324..2315899) /locus_tag="AGROH133_08197" /note="Protein of unknown function (DUF2459); Region: DUF2459; cl09819" /db_xref="CDD:164150" gene complement(2315987..2317696) /gene="ureC" /locus_tag="AGROH133_08199" /db_xref="GeneID:10268094" CDS complement(2315987..2317696) /gene="ureC" /locus_tag="AGROH133_08199" /EC_number="3.5.1.5" /note="ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; Urea amidohydrolase (urease) subunit alpha" /codon_start=1 /transl_table=11 /product="urease subunit alpha" /protein_id="YP_004279615.1" /db_xref="GI:325293751" /db_xref="GeneID:10268094" /translation="MPYKISRAAYAGMFGPTVGDKVRLADTELFIEIEKDYTTYGEEV KFGGGKVIRDGMGQSQATRAEGAVDTVITNVVIVDHSGIYKADVGLKNGRIHAIGKAG NPDTQPGVTIIVGPSTEAIAGEGKILTAGGMDAHIHFICPQQIEEALMSGVTCMLGGG SGPAHGTLATTCTGAWHIERMIESFDAFPMNLALAGKGNASLPAPLEEMILAGASSLK LHEDWGTTPAAIDNCLTVADEYDVQVMIHTDTLNESGFVEDTVAAIKGRTIHAFHTEG AGGGHAPDIIKVCGNPNVIPSSTNPTRPYTINTLAEHLDMLMVCHHLSSSIPEDIAFA ESRIRKETIAAEDILHDIGAFSIISSDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEE TGENDNFRVRRYIAKYTINPAIAQGVSHEIGSIEVGKRADLVLWNPAFFGVKPEMVLL GGSIAAAPMGDPNASIPTPQPMHYRPMFAAYGKLRTNSSVTFVSQASLDAGLAGRLGV AKKLMAVKNVRGGISKASMIHNSLTPHIEVDPETYEVRADGELLTCEPATVLPMAQRY FLF" misc_feature complement(2315990..2317693) /gene="ureC" /locus_tag="AGROH133_08199" /note="urease subunit alpha; Reviewed; Region: ureC; PRK13207" /db_xref="CDD:183894" misc_feature complement(2315993..2317687) /gene="ureC" /locus_tag="AGROH133_08199" /note="Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of...; Region: Urease_alpha; cd00375" /db_xref="CDD:30031" misc_feature complement(order(2315993..2316007,2316272..2316274, 2316287..2316295,2316299..2316316,2316380..2316382, 2317322..2317324,2317373..2317387,2317529..2317537, 2317544..2317546,2317562..2317564,2317568..2317579, 2317622..2317624,2317628..2317630,2317634..2317639, 2317655..2317657,2317676..2317678,2317682..2317687)) /gene="ureC" /locus_tag="AGROH133_08199" /note="subunit interactions [polypeptide binding]; other site" /db_xref="CDD:30031" misc_feature complement(order(2316602..2316607,2316614..2316616, 2316734..2316736,2316863..2316865,2316878..2316880, 2316956..2316958,2317037..2317039,2317043..2317045, 2317190..2317192,2317283..2317285,2317289..2317291)) /gene="ureC" /locus_tag="AGROH133_08199" /note="active site" /db_xref="CDD:30031" misc_feature complement(2316701..2316751) /gene="ureC" /locus_tag="AGROH133_08199" /note="flap region; other site" /db_xref="CDD:30031" gene complement(2317701..2318345) /locus_tag="AGROH133_08200" /db_xref="GeneID:10268095" CDS complement(2317701..2318345) /locus_tag="AGROH133_08200" /codon_start=1 /transl_table=11 /product="urease operon 23 kDa accessory protein" /protein_id="YP_004279616.1" /db_xref="GI:325293752" /db_xref="GeneID:10268095" /translation="MGRRIMIVGNGEMPQGVADLIDLSDIVIRFNDCRSLGAGGSRTD VVAICNTGRPGREMSGGAAWRDNEGVQQASAIWSVRDPAKFSQMEPDIRARWPELTDF CADYTSGFAALAEETGKSHIVIPRGVHERLDHALQVYAPAPYVCPSTGLLAIAHVLET VSGGDDEVSIAGFGHHGWNGHPFAAEKQLVEALTHEGRLTRISPISIFSASEGA" misc_feature complement(2317746..>2318339) /locus_tag="AGROH133_08200" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:189713" gene complement(2318351..2318761) /locus_tag="AGROH133_08201" /db_xref="GeneID:10268096" CDS complement(2318351..2318761) /locus_tag="AGROH133_08201" /note="Protein of unknown function DUF1311; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279617.1" /db_xref="GI:325293753" /db_xref="GeneID:10268096" /translation="MTLKKFCFGAAVLLSLAASSAFADDAPDCTSPQTQADMTICAGK DYEKADKQLNAAYQKVRKQLAERDKTADESGKGAVDALVAAQRAWVAFRDANCDAFGF QARGGTMEPMLVSSCLADMSNKRADELRQLSEGF" misc_feature complement(2318354..>2318677) /locus_tag="AGROH133_08201" /note="Protein of unknown function (DUF1311); Region: DUF1311; cl01530" /db_xref="CDD:194158" gene complement(2318771..2319127) /locus_tag="AGROH133_08203" /db_xref="GeneID:10268097" CDS complement(2318771..2319127) /locus_tag="AGROH133_08203" /note="Glutathione-dependent formaldehyde-activating, GFA; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279618.1" /db_xref="GI:325293754" /db_xref="GeneID:10268097" /translation="MATAHYHGSCQCGDVSFEVDADLDHTVVCNCSRCKRLGSTLAFA PREKFTLLSGDDKLTEYLFNKHKIHHLFCSTCGIESFAYADGPDGTPMVAVNTNCLDG VDPRALKPQAFDGAAA" misc_feature complement(2318774..2319112) /locus_tag="AGROH133_08203" /note="Glutathione-dependent formaldehyde-activating enzyme; Region: GFA; cl01553" /db_xref="CDD:186452" gene complement(2319129..2319434) /gene="ureB" /locus_tag="AGROH133_08204" /db_xref="GeneID:10268098" CDS complement(2319129..2319434) /gene="ureB" /locus_tag="AGROH133_08204" /EC_number="3.5.1.5" /note="ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; Urea amidohydrolase (urease) beta subunit" /codon_start=1 /transl_table=11 /product="urease beta subunit" /protein_id="YP_004279619.1" /db_xref="GI:325293755" /db_xref="GeneID:10268098" /translation="MKPGEIIAAEGTIELNAGQPTVTIEVANTGDRPVQVGSHYHFFE TNAGLVFDRDKVRGMRLDIPAGTAVRFEPGQKREVTLVPLSGKREVYGFRQQIMGRL" misc_feature complement(2319132..2319434) /gene="ureB" /locus_tag="AGROH133_08204" /note="Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use...; Region: Urease_beta; cd00407" /db_xref="CDD:73201" misc_feature complement(2319432..2319434) /gene="ureB" /locus_tag="AGROH133_08204" /note="gamma-beta subunit interface [polypeptide binding]; other site" /db_xref="CDD:73201" misc_feature complement(order(2319156..2319164,2319168..2319182, 2319237..2319245,2319249..2319251,2319255..2319257, 2319318..2319320,2319387..2319404,2319408..2319431)) /gene="ureB" /locus_tag="AGROH133_08204" /note="alpha-beta subunit interface [polypeptide binding]; other site" /db_xref="CDD:73201" gene complement(2319455..2319712) /locus_tag="AGROH133_08205" /db_xref="GeneID:10268099" CDS complement(2319455..2319712) /locus_tag="AGROH133_08205" /note="Protein of unknown function DUF1272; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279620.1" /db_xref="GI:325293756" /db_xref="GeneID:10268099" /translation="MALELRPNCECCDRDLAPDSRDAMICSFECTFCADCATDVLKGA CPNCGGELVRRPIRPAAKLVNNPASTTRVLKAEGCAAATAA" misc_feature complement(2319458..2319709) /locus_tag="AGROH133_08205" /note="Protein of unknown function (DUF1272); Region: DUF1272; cl01568" /db_xref="CDD:194165" gene complement(2319723..2320025) /gene="ureA" /locus_tag="AGROH133_08206" /db_xref="GeneID:10268100" CDS complement(2319723..2320025) /gene="ureA" /locus_tag="AGROH133_08206" /EC_number="3.5.1.5" /note="UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; Urea amidohydrolase (urease) gamma subunit" /codon_start=1 /transl_table=11 /product="urease gamma subunit" /protein_id="YP_004279621.1" /db_xref="GI:325293757" /db_xref="GeneID:10268100" /translation="MNLTPREKDKLLISMAAMVARRRLERGVKLNYPEAIALITDFVV EGARDGRAVADLMEAGAHVISRDQVMEGIADMIHDVQVEATFPDGTKLVTVHEPIR" misc_feature complement(2319729..2320016) /gene="ureA" /locus_tag="AGROH133_08206" /note="Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use...; Region: Urease_gamma; cd00390" /db_xref="CDD:63883" misc_feature complement(order(2319777..2319779,2319783..2319785, 2319798..2319800,2319813..2319815,2319906..2319908, 2319927..2319935,2319957..2319959,2319969..2319971, 2319996..2320001)) /gene="ureA" /locus_tag="AGROH133_08206" /note="alpha-gamma subunit interface [polypeptide binding]; other site" /db_xref="CDD:63883" misc_feature complement(2319813..2319815) /gene="ureA" /locus_tag="AGROH133_08206" /note="beta-gamma subunit interface [polypeptide binding]; other site" /db_xref="CDD:63883" gene complement(2320135..2320986) /gene="ureD" /locus_tag="AGROH133_08207" /db_xref="GeneID:10268101" CDS complement(2320135..2320986) /gene="ureD" /locus_tag="AGROH133_08207" /note="Urease accessory protein UreH" /codon_start=1 /transl_table=11 /product="urease accessory protein ureD" /protein_id="YP_004279622.1" /db_xref="GI:325293758" /db_xref="GeneID:10268101" /translation="MQSEQQAIRPSGLEDGEPARQQRARGRGRIVTKAVEGRSRLDQL FQEGCAKIRLPDTFSNEIEAILINSSGGLTGGDEMEWQAVAGAGTSLVVTTQACEKVY KASSGTATVTARVSAGPGARLHWLPQETILFDRASLTRRLEADLDATSEFIAVEAVLL GRQAMGEAMQHGLFRDRWRIRHGGRLVHAEELLLAGEVAELTAKPAVLAGQVAFATLL YIGPLAEALLPKIRAIAGESGGASEWQGKLVVRVSAADGFSLRKILFPIISLLRNGAP VPKVWNL" misc_feature complement(2320144..2320899) /gene="ureD" /locus_tag="AGROH133_08207" /note="UreD urease accessory protein; Region: UreD; cl00530" /db_xref="CDD:193855" gene complement(2320893..2322167) /locus_tag="AGROH133_08208" /db_xref="GeneID:10268102" CDS complement(2320893..2322167) /locus_tag="AGROH133_08208" /note="Poly(3-hydroxybutyrate) depolymerase" /codon_start=1 /transl_table=11 /product="polyhydroxybutyrate depolymerase" /protein_id="YP_004279623.1" /db_xref="GI:325293759" /db_xref="GeneID:10268102" /translation="MPNKGVSMHQDFALGRAARLFRSARTLFLGLAICASASVAASAS TCGQLAQPGVEPGRHDFSILSSGQKREGVYFVPSAYDGKKPVPVVFDFHGSNSNPHGQ LNRSGWDKLAERDGLMVVALAGSLNGELPGTHAWNVPGVTTRPGGLDEVSFIRDAIAM VKGKFCVDEERFYGSGYSGGGRMLSQFICNGSADFTAAGFVASLRAGYPLETEGKWGP DAASCKPARPMSIIAFAGLKDPANPYQGGGKSYWQYGGETALKRWAEMDGCKGGAKTR PGESFTVNSYDVCKGGARIQSYVIDNWDHAWPRATMKAEVLAASAVLTRKPGGEQTPK AEPAVERKMPTGEVTRTVDAAERMWDFFRNTEGQMVVDAVVKKDCGAKAGSASATVSE TACSQNSKPSALPVSKTANLPGSSAPVAEDAL" misc_feature complement(2321058..2322119) /locus_tag="AGROH133_08208" /note="Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: LpqC; COG3509" /db_xref="CDD:33312" gene complement(2322402..2323097) /locus_tag="AGROH133_08210" /db_xref="GeneID:10268103" CDS complement(2322402..2323097) /locus_tag="AGROH133_08210" /EC_number="3.6.3.25" /note="ABC transporter nucleotide-binding protein/ATPase (urea/amide); ABC-type branched-chain amino acid transport systems, ATPase component" /codon_start=1 /transl_table=11 /product="urea/amide ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279624.1" /db_xref="GI:325293760" /db_xref="GeneID:10268103" /translation="MLNVENINLHYGAAQALRGVSLKAEMGKITCVLGRNGVGKSSLL RAVTGQHAISGGSISFEGAALDGLAPYHRAKRGVGYVPQGREIFPLLSVQENLESGYA PLPRKERFIPDDIFSLFPVLQSMLGRRGGDLSGGQQQQLAIGRALVTRPKILVLDEPT EGIQPSIIKDIGRAIKYLRDSTGMAILLVEQYLDFCRELADYVYIMDRGEIVHEGLAE TLDTPEARRHLTV" misc_feature complement(2322405..2323094) /locus_tag="AGROH133_08210" /note="urea ABC transporter, ATP-binding protein UrtE; Region: urea_trans_UrtE; TIGR03410" /db_xref="CDD:163250" misc_feature complement(2322435..2323094) /locus_tag="AGROH133_08210" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature complement(2322975..2322998) /locus_tag="AGROH133_08210" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature complement(order(2322525..2322527,2322624..2322629, 2322849..2322851,2322972..2322980,2322984..2322989)) /locus_tag="AGROH133_08210" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature complement(2322849..2322860) /locus_tag="AGROH133_08210" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature complement(2322672..2322701) /locus_tag="AGROH133_08210" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature complement(2322624..2322641) /locus_tag="AGROH133_08210" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature complement(2322606..2322617) /locus_tag="AGROH133_08210" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature complement(2322519..2322539) /locus_tag="AGROH133_08210" /note="H-loop/switch region; other site" /db_xref="CDD:72983" gene complement(2323306..2324067) /locus_tag="AGROH133_08211" /db_xref="GeneID:10268104" CDS complement(2323306..2324067) /locus_tag="AGROH133_08211" /note="ABC transporter nucleotide-binding protein/ATPase (urea/amide); Uncharacterized ABC-type transport system, ATPase component" /codon_start=1 /transl_table=11 /product="urea/amide ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279625.1" /db_xref="GI:325293761" /db_xref="GeneID:10268104" /translation="MNTVSENRTKSLLYLDGVSVSFDGFRALNSLSFVVEPGELRAII GPNGAGKTTMMDIITGKTRPDTGTVLFEDSIDLTKKDEADIAQLGIGRKFQKPTVFES HTVWDNLELALNRKRGVFATLFYRLTAEDKARIEEILATVRLSHRRGDLAANLSHGQK QWLEIGMLLAQEPKLLLVDEPVAGMTDAETAETAVLLKEIAKTRSVVVVEHDMGFIRE LGVKVTCLAEGSVLAEGSIDFVSSDPKVIENYLGR" misc_feature complement(2323309..2324037) /locus_tag="AGROH133_08211" /note="urea ABC transporter, ATP-binding protein UrtD; Region: urea_trans_UrtD; TIGR03411" /db_xref="CDD:163251" misc_feature complement(2323330..2324031) /locus_tag="AGROH133_08211" /note="The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E...; Region: ABC_Mj1267_LivG_branched; cd03219" /db_xref="CDD:72978" misc_feature complement(2323912..2323935) /locus_tag="AGROH133_08211" /note="Walker A/P-loop; other site" /db_xref="CDD:72978" misc_feature complement(order(2323435..2323437,2323528..2323533, 2323783..2323785,2323909..2323917,2323921..2323926)) /locus_tag="AGROH133_08211" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72978" misc_feature complement(2323783..2323794) /locus_tag="AGROH133_08211" /note="Q-loop/lid; other site" /db_xref="CDD:72978" misc_feature complement(2323576..2323605) /locus_tag="AGROH133_08211" /note="ABC transporter signature motif; other site" /db_xref="CDD:72978" misc_feature complement(2323528..2323545) /locus_tag="AGROH133_08211" /note="Walker B; other site" /db_xref="CDD:72978" misc_feature complement(2323510..2323521) /locus_tag="AGROH133_08211" /note="D-loop; other site" /db_xref="CDD:72978" misc_feature complement(2323429..2323449) /locus_tag="AGROH133_08211" /note="H-loop/switch region; other site" /db_xref="CDD:72978" gene complement(2324075..2325253) /locus_tag="AGROH133_08212" /db_xref="GeneID:10268105" CDS complement(2324075..2325253) /locus_tag="AGROH133_08212" /note="ABC transporter transmembrane protein (urea/amide); ABC-type branched-chain amino acid transport system, permease component" /codon_start=1 /transl_table=11 /product="urea/amide ABC transporter transmembrane protein" /protein_id="YP_004279626.1" /db_xref="GI:325293762" /db_xref="GeneID:10268105" /translation="MITGFLLRALDRRISIAIGIILAIAVLVPASNLLLPADSAFRIP TYIMSMLGKYLAYALLALALDLVWGYCGILSLGHAAFFALGGYAMGMYLMRQIGTRGV YGHPVLPDFMVFLNWKELPWFWHGFDMFWFAALMVLVVPGLLAFVFGWFAFRSRVNGV YLSIITQAMTYALLLAFFRNDMGFGGNNGLTDFKDILGFSVQADGTRAVLFAMTAVML ALSLLIASGIVNSKFGKVLVGVRDAESRVRFLGFRVENIKLFTFVVSAMMAGIAGALF VPQVGIINPGEFSPANSIEVVVWTAVGGRGTLIGPIIGALLVNGGKSYFTGAFPEFWL FALGGLFIAVTLFFPKGIVGTVQHYLVGRREKRVARAASAAGQPGNDSAATAAQQAAE " misc_feature complement(2324192..2325061) /locus_tag="AGROH133_08212" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature complement(2324465..2324521) /locus_tag="AGROH133_08212" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene complement(2325250..2326863) /locus_tag="AGROH133_08223" /db_xref="GeneID:10268106" CDS complement(2325250..2326863) /locus_tag="AGROH133_08223" /note="ABC transporter transmembrane protein (urea/amide); Branched-chain amino acid ABC-type transport system, permease components" /codon_start=1 /transl_table=11 /product="urea/amide ABC transporter transmembrane protein" /protein_id="YP_004279627.1" /db_xref="GI:325293763" /db_xref="GeneID:10268106" /translation="MTIRSFLGAIFLWLTLGIAAQSLAQSDPKALIDQLGTADFKQAE TLIGQIAATGDARVVPALEAFASGDLYVRKADNLVFMTKPSGSNFTLIDPLTGESAGE APKAAVTKIRVNNNLRRVIRAAMGGLTLLSPERWVRLSAADAVLKAPSAENLELLEAA ISKETDKEVRTRMEEARAVSLLSSDRPLEVKKEAIATIKALGGRDAISILMAATPTVD PSLKPDVDEAISSIESSLAFWDYAQNVWYGLSLGSVLLLAAIGLAITFGVMGIINMAH GEMVMIGAYSTFMVQELIRSHFPGLFDWSLAIALPAAFLVTACVGLIMERGVIRYLYG RPLETLLATWGISLILQQGVRSIFGPTNREVGSPSWMSGSFSVGYLNFTWNRVWIVCF SLSVFFALLVLLKRSAFGLQMRAVTQNRRMASSMGIRTPWVDAFTFALGSGVAGLAGV ALSQIDNVSPNLGQSYIIDSFMVVVFGGVGNLWGTLVGALSLGVLNKFLEPTVGAVLG KILVLVLIILFIQKRPRGLFALKGRAIEA" misc_feature complement(2325280..2326071) /locus_tag="AGROH133_08223" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature complement(2325547..2325603) /locus_tag="AGROH133_08223" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene complement(2327137..2328426) /locus_tag="AGROH133_08232" /db_xref="GeneID:10268107" CDS complement(2327137..2328426) /locus_tag="AGROH133_08232" /note="ABC transporter substrate-binding protein (urea/amide); ABC-type branched-chain amino acid transport systems, periplasmic component" /codon_start=1 /transl_table=11 /product="urea/amide ABC transporter substrate-binding protein" /protein_id="YP_004279628.1" /db_xref="GI:325293764" /db_xref="GeneID:10268107" /translation="MTFRKTLSAALLGAIMSTTAFHGAFAADDTIKVGVLHSLSGTMA ISETTLKDAMLMLIDEQNKKGGVLGKKLEAVVVDPASDWPLFAEKARQLISQDKVAAV FGCWTSSSRKSVLPVFEELNSLLFYPVQYEGEESSRNIVYTGAAPNQQAIPAVDYLAK TEGVERWVLAGTDYVYPQTTNKILKAYLMSKGVKEEDIMINYTPFGQSDWQTIVSDIK KFGSAGKKTAVVSTINGDANVPFYKELANQGIKAEDIPVVAFSVGEEELAGLDTAPLV GHLAAWNYFQSVDTEVNAEFIKTWHAFTKNDKRVTNDPMEAAYIGFNAWVKAVETAGT TDTDAVLDSIIGVSVPNLSGGYSTVMPNHHITKPVLIGEIQADGQFEIVQQTPQVVGD EWSDYLPDSKDLISDWRKPMSCGNFNVATGKCGGKGS" misc_feature complement(2327266..2328360) /locus_tag="AGROH133_08232" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(2327269..2328333) /locus_tag="AGROH133_08232" /note="Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); Region: PBP1_FmdD_like; cd06355" /db_xref="CDD:107350" misc_feature complement(order(2327905..2327907,2328034..2328039, 2328046..2328048,2328109..2328111)) /locus_tag="AGROH133_08232" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:107350" gene complement(2328770..2328967) /locus_tag="AGROH133_08235" /db_xref="GeneID:10268108" CDS complement(2328770..2328967) /locus_tag="AGROH133_08235" /codon_start=1 /transl_table=11 /product="glutamine synthetase translation inhibitor" /protein_id="YP_004279629.1" /db_xref="GI:325293765" /db_xref="GeneID:10268108" /translation="MATDFHRETATIFQFPVGGRAGLSKFRNIGLSDLEREARQPHVD FGSWYHHDAIRDEERDDKPHA" misc_feature complement(2328791..2328943) /locus_tag="AGROH133_08235" /note="Protein of unknown function (DUF2735); Region: DUF2735; pfam10931" /db_xref="CDD:151378" gene 2329458..2330492 /gene="glnA" /locus_tag="AGROH133_08236" /db_xref="GeneID:10268109" CDS 2329458..2330492 /gene="glnA" /locus_tag="AGROH133_08236" /EC_number="6.3.1.2" /note="Glutamine synthetase, catalytic domain; Glutamine synthetase" /codon_start=1 /transl_table=11 /product="glutamine synthetase II" /protein_id="YP_004279630.1" /db_xref="GI:325293766" /db_xref="GeneID:10268109" /translation="MTKFKLEYIWLDGYKPVPNLRGKTQVKEFDEFPTLEQLPLWGFD GSSTQQAEGHSSDCVLKPVAIYPDPARTNGVLVMCEVMMPDGVTPHASNSRATILDDE DAWFGFEQEYFFYQDGRPLGFPEQGYPAPQGPYYTGVGFKNVGSVAREIVEEHLDLCL EAGINHEGINAEVAKGQWEFQVFGKGSKRAADQIWIARYLLLRLCEQYGIDVEFHCKP LGDTDWNGSGMHCNFSTKFMREVGGKEYFEALMAAFAKNWQEHIDVYGPDNHLRLTGK HETAPWNKFSYGVADRGASIRVPHSFVNNGYRGYLEDRRPNSQGCPYQIASVVLKTIA EVPLAKSAAA" misc_feature 2329464..2330456 /gene="glnA" /locus_tag="AGROH133_08236" /note="glutamine synthetase; Region: PLN02284" /db_xref="CDD:177922" misc_feature 2329473..2329709 /gene="glnA" /locus_tag="AGROH133_08236" /note="Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951" /db_xref="CDD:146534" misc_feature 2329758..2330447 /gene="glnA" /locus_tag="AGROH133_08236" /note="Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120" /db_xref="CDD:189401" gene 2330710..2331480 /gene="idnO" /locus_tag="AGROH133_08237" /db_xref="GeneID:10268110" CDS 2330710..2331480 /gene="idnO" /locus_tag="AGROH133_08237" /EC_number="1.1.1.69" /note="Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /codon_start=1 /transl_table=11 /product="gluconate 5-dehydrogenase" /protein_id="YP_004279631.1" /db_xref="GI:325293767" /db_xref="GeneID:10268110" /translation="MGILKKFSLENRIAIITGSGRGLGFEIARAFTEAGAHVWLTGRN AEALEQAAGTLRQAGGKADYAAFDIADTAAGTALVHRIMDEFGHLDILVNNVGARDRR PLSEFSDEDVLELIRTDLTSSVSLSRDAAQAMNTNSYGRIITITSILGHIVRPGDAIY PVAKQGLTGLMRAIAVEYGARGITSNAIAPGMFATETNAALAENPDMVAFAKLRVPLE RWGRPDEIAGAALFLASDASSFVNGHVLTVDGGMSVRL" misc_feature 2330710..2331477 /gene="idnO" /locus_tag="AGROH133_08237" /note="gluconate 5-dehydrogenase; Provisional; Region: PRK06124" /db_xref="CDD:180412" misc_feature 2330728..2331471 /gene="idnO" /locus_tag="AGROH133_08237" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature order(2330761..2330763,2330767..2330772,2330776..2330778, 2330833..2330841,2330992..2331000,2331142..2331150, 2331187..2331189,2331199..2331201,2331277..2331288) /gene="idnO" /locus_tag="AGROH133_08237" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(2331064..2331066,2331148..2331150,2331187..2331189, 2331199..2331201) /gene="idnO" /locus_tag="AGROH133_08237" /note="active site" /db_xref="CDD:187535" gene 2331455..2334919 /locus_tag="AGROH133_08238" /db_xref="GeneID:10268111" CDS 2331455..2334919 /locus_tag="AGROH133_08238" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004279632.1" /db_xref="GI:325293768" /db_xref="GeneID:10268111" /translation="MAACRCGCENGKTPFAERGWILGMAARQRIIPVRREYNRWVANQ TLEDYALRFTAKSARQFSSNRISHTAIGAISFLALEAIGGAITLSYGTTNAFYAIIVA AIAMLAVGLPISRYAIRHGVDIDLLTRGASFGYIGSTITSLIYAAFTFMLFAIEASIM SGALELALGIPLWIGYIISAVMVIPLVTHGVRLISRFQIITQPFWIVLNVLPFIFIAL MDWEKYDLWRAFSGIHHASGPPGTVAHFNLVEFGAASAVILALMSQIGEQVDFLRFLP AEGQSRLRHRIAVFLAGAGWVVVGVPKLLAGSFLVVLTFSSGVSVDRAADPAQMYLTA FGYMIPNHTAAMLLMVAFVVVSQLKINVMNAYAGSLAWSNFFSRLTHSHPGRVVWLVF NVVIALLLMELGIYRLLEETLGIFSIVAMAWLCTISADLFINKPLGLAPPGIEFKRAH LYDINPVGVGSMALSATIALMAHFGTFGALAASLAPYLTLIVAFIASPLIAWGTKGKF YLARKPRQKWRELSAITCSICEHPFEPEDMAWCPAYAAPICSLCCSLDSRCHDMCKPK AKLNYQVATVAKSFLPHQLVAKLATRLGRYGMAAAIAVTAIGGILALIAHQVGTASPA TADVVNRTILIVFFVFAVIAGIVCWFLVLAHDSRVVAEEESSRQNTLLLKEIAAHKKT DAALQDAKETAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILERDETIPAPRQSAIK VIRRSADHLSGLIDGLLDISKIEAGRLQVYSNEINIQDFLDQIVDMFRPQAQAKGLEF RHERAHSLPQYVRTDEKRLRQILVNLLSNAIKFTDEGSVTFDVAYRSQVASFTVSDTG RGIAEKDLARIYEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEISVSSEKDNGST FRVRLMLSAVHRPSTAPAPEKTIRSYSGPRRTIVVVDDNEDHRELMRQVLSPLDFVVL TAQSGPECLTLIEGVQPDLFLIDISMPGMSGWQLVTKLREAGQTAPLIMLSANIGDGT VAGAGEDNHNDAIAKPVDIRHLFDRLAVHLGLKWIYDTDLPPAPIPQPPAQIVHPGAI HIKDLQRLGEIGYIRGIEAKLADLARNTNNLPFTQELGTYVQAFDLAGYAHFLKRFEE NDRGDGKA" misc_feature 2331701..>2332357 /locus_tag="AGROH133_08238" /note="Sodium:solute symporter family; Region: SSF; cl00456" /db_xref="CDD:186007" misc_feature 2331845..2332960 /locus_tag="AGROH133_08238" /note="Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]; Region: CodB; COG1457" /db_xref="CDD:31646" misc_feature 2333543..2333737 /locus_tag="AGROH133_08238" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(2333561..2333563,2333573..2333575,2333585..2333587, 2333594..2333596,2333606..2333608,2333615..2333617, 2333666..2333668,2333678..2333680,2333687..2333689, 2333699..2333701,2333708..2333710,2333720..2333722) /locus_tag="AGROH133_08238" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 2333579..2333581 /locus_tag="AGROH133_08238" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 2333903..2334211 /locus_tag="AGROH133_08238" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(2333921..2333923,2333933..2333935,2333942..2333944, 2334008..2334010,2334014..2334016,2334020..2334022, 2334026..2334031,2334110..2334121,2334167..2334169, 2334173..2334175,2334188..2334193,2334197..2334199) /locus_tag="AGROH133_08238" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 2333933..2333935 /locus_tag="AGROH133_08238" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(2334020..2334022,2334026..2334028,2334110..2334112, 2334116..2334118) /locus_tag="AGROH133_08238" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature 2334293..2334622 /locus_tag="AGROH133_08238" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature 2334296..2334634 /locus_tag="AGROH133_08238" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2334305..2334310,2334437..2334439,2334461..2334463, 2334521..2334523,2334578..2334580,2334587..2334592) /locus_tag="AGROH133_08238" /note="active site" /db_xref="CDD:29071" misc_feature 2334437..2334439 /locus_tag="AGROH133_08238" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2334446..2334451,2334455..2334463) /locus_tag="AGROH133_08238" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2334587..2334595 /locus_tag="AGROH133_08238" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene 2334916..2335845 /locus_tag="AGROH133_08253" /db_xref="GeneID:10268112" CDS 2334916..2335845 /locus_tag="AGROH133_08253" /note="Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two-component response regulator protein" /protein_id="YP_004279633.1" /db_xref="GI:325293769" /db_xref="GeneID:10268112" /translation="MSGQGAALPRDIVLLVDDSPEALGFLTDALEQSGFSALIATSGQ AALNIAERITPDIILLDAVMPAMDGFETCRRLKANAAVAQVPVIFMTGLTETEHVVRA LESGGVDYLTKPINIDELRARIRVHLSNARSAQSARVALDAAGRHLLAVRANGAIHWS TPQATRLVNAATGRDDGLEIVVAHISGWLADRTTVDSARDAPLTITEAGRPALQLSFL GAMGPDEYLFRLTAANEKSDDHLLKDHFALTTRESEVLLWIAKGKSNRDIGDILGLSA RTVNKHLEQIYVKLGVENRASAAVKAAHILHQG" misc_feature 2334952..2335761 /locus_tag="AGROH133_08253" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 2334955..2335299 /locus_tag="AGROH133_08253" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2334964..2334969,2335096..2335098,2335120..2335122, 2335186..2335188,2335243..2335245,2335252..2335257) /locus_tag="AGROH133_08253" /note="active site" /db_xref="CDD:29071" misc_feature 2335096..2335098 /locus_tag="AGROH133_08253" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2335105..2335110,2335114..2335122) /locus_tag="AGROH133_08253" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2335252..2335260 /locus_tag="AGROH133_08253" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 2335657..2335821 /locus_tag="AGROH133_08253" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(2335660..2335668,2335705..2335713,2335735..2335740, 2335744..2335749,2335753..2335767,2335798..2335800) /locus_tag="AGROH133_08253" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(2335693..2335695,2335699..2335701,2335705..2335707, 2335798..2335806,2335813..2335815) /locus_tag="AGROH133_08253" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 2336039..2336575 /locus_tag="AGROH133_08255" /db_xref="GeneID:10268113" CDS 2336039..2336575 /locus_tag="AGROH133_08255" /note="Predicted ATPase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279634.1" /db_xref="GI:325293770" /db_xref="GeneID:10268113" /translation="MHHFIILSGCSGGGKSTLLAELAHRGFATVEEPGRRIVIEETRN NGTALPWIDLEAFARRAIAMALEDRQKAPAEGLVFFDRGLIDAASALHHISGDGFIET LRRTHRYNPLVFLTPPWPEIYRGDSERKHGFEVAVEEYQRLLHDYARLDYETIVLPKA PVTERADIVLERLAAEAG" misc_feature 2336042..2336557 /locus_tag="AGROH133_08255" /note="Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]; Region: NadR; cl01238" /db_xref="CDD:91689" gene complement(2336779..2337897) /gene="livK" /locus_tag="AGROH133_08256" /db_xref="GeneID:10268114" CDS complement(2336779..2337897) /gene="livK" /locus_tag="AGROH133_08256" /note="Extracellular ligand-binding receptor; ABC-type branched-chain amino acid transport systems, periplasmic component" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter substrate-binding protein" /protein_id="YP_004279635.1" /db_xref="GI:325293771" /db_xref="GeneID:10268114" /translation="MKKSLLSAVALTAMVAFSGSAWADIVIAVGGPLTGPNAAFGAQL QKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHFNSG VSIPASEVYAENGILEVTPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHYKD AKIAIIHDKTPYGQGLADETKKAANAAGLTEAMYEGVNVGDKDFSALISKMKEAGVSV IYWGGLHTEAGLIIRQSADQGLKAKLISGDGIVSNELASIAGDAVEGTLNTFGPDPTL RPENKELVEKFKAAGFNPEAYTLYSYAALQAIAGAAKAAGSVEPEKVAEALKKGTFPT ALGDISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGT" misc_feature complement(2336785..2337852) /gene="livK" /locus_tag="AGROH133_08256" /note="ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683" /db_xref="CDD:31027" misc_feature complement(2336827..2337822) /gene="livK" /locus_tag="AGROH133_08256" /note="Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342" /db_xref="CDD:107337" misc_feature complement(order(2337025..2337027,2337115..2337120, 2337127..2337129,2337136..2337138,2337199..2337201, 2337751..2337753,2337760..2337762,2337772..2337774, 2337799..2337801)) /gene="livK" /locus_tag="AGROH133_08256" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:107337" misc_feature complement(order(2337154..2337156,2337226..2337228, 2337382..2337384,2337529..2337534,2337595..2337603)) /gene="livK" /locus_tag="AGROH133_08256" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:107337" gene complement(2338016..2338369) /locus_tag="AGROH133_08259" /db_xref="GeneID:10268115" CDS complement(2338016..2338369) /locus_tag="AGROH133_08259" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279636.1" /db_xref="GI:325293772" /db_xref="GeneID:10268115" /translation="MQGLLFETDSGVRYILRALVVLLGFWTAWRTGRSVADGWGDFPR VVIYTLALGLVMRFLHFALFNGPFINGFYYVFDVVLLLAFSSIGFRMRRTSQMVNNYY WLYDRTSAFSYKKKD" gene complement(2338540..2339268) /gene="livF" /locus_tag="AGROH133_08263" /db_xref="GeneID:10268116" CDS complement(2338540..2339268) /gene="livF" /locus_tag="AGROH133_08263" /EC_number="3.6.3.25" /note="ABC transporter; ABC-type branched-chain amino acid transport systems, ATPase component" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279637.1" /db_xref="GI:325293773" /db_xref="GeneID:10268116" /translation="MSGEPLLKVQGVETYYGNIRALAGVDVEVNKGEIVSLIGANGAG KSTLMMTICGSPQARTGQVTFDGEDITRLPTHLIARRRIAQSPEGRRIFPRMTVLENL QMGANLDNLKYFKEDVEKIFVMFPRLKERQSQRGGTLSGGEQQMLSIGRALMARPKLL LLDEPSLGLAPLIVKGIFEAIKKLNQEEGLTVFLVEQNAFAALKLSDRAYVMVNGKVT MSGSGRELLADPQVRAAYLEGGRH" misc_feature complement(2338552..2339259) /gene="livF" /locus_tag="AGROH133_08263" /note="ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410" /db_xref="CDD:30759" misc_feature complement(2338582..2339250) /gene="livF" /locus_tag="AGROH133_08263" /note="LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224" /db_xref="CDD:72983" misc_feature complement(2339131..2339154) /gene="livF" /locus_tag="AGROH133_08263" /note="Walker A/P-loop; other site" /db_xref="CDD:72983" misc_feature complement(order(2338678..2338680,2338777..2338782, 2339005..2339007,2339128..2339136,2339140..2339145)) /gene="livF" /locus_tag="AGROH133_08263" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72983" misc_feature complement(2339005..2339016) /gene="livF" /locus_tag="AGROH133_08263" /note="Q-loop/lid; other site" /db_xref="CDD:72983" misc_feature complement(2338825..2338854) /gene="livF" /locus_tag="AGROH133_08263" /note="ABC transporter signature motif; other site" /db_xref="CDD:72983" misc_feature complement(2338777..2338794) /gene="livF" /locus_tag="AGROH133_08263" /note="Walker B; other site" /db_xref="CDD:72983" misc_feature complement(2338759..2338770) /gene="livF" /locus_tag="AGROH133_08263" /note="D-loop; other site" /db_xref="CDD:72983" misc_feature complement(2338672..2338692) /gene="livF" /locus_tag="AGROH133_08263" /note="H-loop/switch region; other site" /db_xref="CDD:72983" misc_feature complement(2339268..2340146) /note="potential frameshift: common BLAST hit: gi|159185210|ref|NP_355376.2| ABC transporter nucleotide-binding protein/ATPase" gene complement(2339268..2339582) /gene="livG" /locus_tag="AGROH133_08264" /db_xref="GeneID:10268117" CDS complement(2339268..2339582) /gene="livG" /locus_tag="AGROH133_08264" /EC_number="3.6.3.29" /note="ABC transporter related; ABC-type branched-chain amino acid transport systems, ATPase component" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279638.1" /db_xref="GI:325293774" /db_xref="GeneID:10268117" /translation="MCTGPELLCLDEPAAGLNPKESLALNALLRGIRDEGTSLLLIEH DMSVVMQISDHVVVLEYGQKISDGSPDHVKNDPKVIAAYLGVEDDEVEDVIAEELDGG VA" misc_feature complement(2339346..>2339582) /gene="livG" /locus_tag="AGROH133_08264" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2339547..2339564) /gene="livG" /locus_tag="AGROH133_08264" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(2339529..2339540) /gene="livG" /locus_tag="AGROH133_08264" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(2339445..2339465) /gene="livG" /locus_tag="AGROH133_08264" /note="H-loop/switch region; other site" /db_xref="CDD:72971" gene complement(2339607..2340146) /gene="livG" /locus_tag="AGROH133_08265" /db_xref="GeneID:10268118" CDS complement(2339607..2340146) /gene="livG" /locus_tag="AGROH133_08265" /EC_number="3.6.3.29" /note="ABC transporter related; ABC-type branched-chain amino acid transport systems, ATPase component" /codon_start=1 /transl_table=11 /product="branched-chain amino acid ABC transporter transmembrane protein" /protein_id="YP_004279639.1" /db_xref="GI:325293775" /db_xref="GeneID:10268118" /translation="MASGTTNMTPNLTGDTILKVEHLSMRFGGLMAINDFSFEAKRGE ITALIGPNGAGKTTVFNCITGFYKPTMGMITMRQQNGEAHLLERLPDFEITKKAKVAR TFQNIRLFSGLTVLENLLVAQHNALMKASGYTILGLLGLPAYKRAVNSSIDKAKYWLD KADLTDRADDPAGDLPYGA" misc_feature complement(<2339613..2340095) /gene="livG" /locus_tag="AGROH133_08265" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2339976..2339999) /gene="livG" /locus_tag="AGROH133_08265" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(2339832..2339834,2339973..2339981, 2339985..2339990)) /gene="livG" /locus_tag="AGROH133_08265" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(2339832..2339843) /gene="livG" /locus_tag="AGROH133_08265" /note="Q-loop/lid; other site" /db_xref="CDD:72971" gene complement(2340146..2341543) /gene="livM" /locus_tag="AGROH133_08266" /db_xref="GeneID:10268119" CDS complement(2340146..2341543) /gene="livM" /locus_tag="AGROH133_08266" /note="Branched-chain amino acid transport system / permease component; ABC-type branched-chain amino acid transport system, permease component" /codon_start=1 /transl_table=11 /product="branched chain amino acid ABC transporter transmembrane protein" /protein_id="YP_004279640.1" /db_xref="GI:325293776" /db_xref="GeneID:10268119" /translation="MTNIASENDTSSPSLMATAVKEGIFAGIVSLGMFILYVGIVTYQ DINNQLIWGTRWGLLSIFVGVAAIGRFLMVGFIRPSMDRRKLAKAKSGILEISEEKGF FHKHFLKLALVLLLLYPVVAVQLFGFQGSLKFVDNFGIQILIYVMLAWGLNIVVGLAG LLDLGYVAFYAVGAYSYALLSSHLGLSFWVLLPVAGILAGFWGIILGFPVLRLRGDYL AIVTLAFGEIIRLVLLNWTDVTKGTFGISGIAKASIFGIWSFDVGAPNNFAKAFGLTM SSAYYKIFLFYVILLLCMLTAYVTIKLRRMPIGRAWEALREDEIACRSLGIDTVITKL TAFATGAMFGGFAGSFFAARQGFVSPESFVFLESAVILAIVVLGGMGSLTGIAIAALV MVGGTELLREMEFLKHVFGPDFTPELYRMLLFGLAMVIVMLFKPRGFVGSREPTAFLR ERKAVSGSFTKEGHG" misc_feature complement(2341223..2341498) /gene="livM" /locus_tag="AGROH133_08266" /note="Domain of unknown function (DUF3382); Region: DUF3382; pfam11862" /db_xref="CDD:152298" misc_feature complement(2340221..2341120) /gene="livM" /locus_tag="AGROH133_08266" /note="Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581" /db_xref="CDD:119323" misc_feature complement(2340530..2340586) /gene="livM" /locus_tag="AGROH133_08266" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119323" gene complement(2341548..2342450) /gene="livH" /locus_tag="AGROH133_08279" /db_xref="GeneID:10268120" CDS complement(2341548..2342450) /gene="livH" /locus_tag="AGROH133_08279" /note="Branched-chain amino acid transport system / permease component; Branched-chain amino acid ABC-type transport system, permease components" /codon_start=1 /transl_table=11 /product="branched chain amino acid ABC transporter transmembrane protein" /protein_id="YP_004279641.1" /db_xref="GI:325293777" /db_xref="GeneID:10268120" /translation="MEYFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFM LGGFAALIVFLIATSFFAGIPVALLLILMMVVAMLMTGLWNWVIERVAYRPLRGSFRL APLITAIGMSIALSNFIQVTQGPRNKPIPSMVTESYHFGSITVSLKQFIIMAVTSVLL FAFWYIVNKTPLGRAQRATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMY YGVASFNDGFIPGVKAFTAAVLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAA FGILAFVLIFKPTGILGRPEVEKV" misc_feature complement(2341575..2342420) /gene="livH" /locus_tag="AGROH133_08279" /note="Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582" /db_xref="CDD:119324" misc_feature complement(2341845..2341901) /gene="livH" /locus_tag="AGROH133_08279" /note="TM-ABC transporter signature motif; other site" /db_xref="CDD:119324" gene 2342786..2343580 /gene="pssB" /locus_tag="AGROH133_08288" /db_xref="GeneID:10268121" CDS 2342786..2343580 /gene="pssB" /locus_tag="AGROH133_08288" /note="3'(2'),5'-bisphosphate nucleotidase; 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'- phosphatase" /codon_start=1 /transl_table=11 /product="exopolysaccharide production protein PssB" /protein_id="YP_004279642.1" /db_xref="GI:325293778" /db_xref="GeneID:10268121" /translation="MIDILTKAALDAGQAIMAVHRAGPHVSYKDDCSPVTEADQRAEV IILQALAAHFPQIPVIAEEAVSNGILPETGTEFFLVDPLDGTKEFISGKDDFTVNIAL IRNGVPVAGVVYAPCRGQAWTGKDNSAEKLAISGEGAILARHPIRARQRGASPVALIS RSHCTAKTEAFVAEHGLKDCISVGSSLKFCMLAEGAADIYPRFSRTMMWDTAAGDAVL RAAGGRTLDCEGRLLAYEVRGDGEDALANPDFIAEGAMAATVEIAR" misc_feature 2342786..2343541 /gene="pssB" /locus_tag="AGROH133_08288" /note="CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine...; Region: CysQ; cd01638" /db_xref="CDD:30136" misc_feature order(2342900..2342902,2342969..2342974,2343026..2343043, 2343047..2343049,2343263..2343265,2343272..2343274, 2343347..2343349,2343383..2343385,2343410..2343415) /gene="pssB" /locus_tag="AGROH133_08288" /note="active site" /db_xref="CDD:30136" gene 2343753..2345018 /locus_tag="AGROH133_08289" /db_xref="GeneID:10268122" CDS 2343753..2345018 /locus_tag="AGROH133_08289" /note="Tumour necrosis factor-like" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279643.1" /db_xref="GI:325293779" /db_xref="GeneID:10268122" /translation="MLISLLVGEMPGRAEGGKAAGTEAKTARPQPPISATTERTPHRS RKNNFIPAHPRPAAPHHNRRRTATERGREIMTEQTARLRLPYILPSQAQKHVTHNEAL QRLDAIVQLVVKDVVAAPPDNAPEGDCFLLSLDSAGDWAGKGGKLAFRQDGAWLLIAP QPGWTAWFASEGKHRVLRDSAWRDVPLPAAATLERLGIGTQADVTNRLALAAPASLFT HTEENGNHRMAINKAAKADTASLLFQSGWSGRAEMGLAGNDGFSIKTSADGISWQTAL LCSGDGRVTMPNRPVVLASLPSGTTRPANGSASGFSMLFIDEGGFVLGDAVGTGGGRE LVVPVKGLYLATLSLAVVSSSGHRVSLAVNGAAGGLTVAGNASNADASQSTTLILPLN AGDRLRLVHEGTAEFAHGSGKTCLSLAAL" misc_feature 2344044..2344301 /locus_tag="AGROH133_08289" /note="Protein of unknown function (DUF2793); Region: DUF2793; pfam10983" /db_xref="CDD:192683" gene 2345210..2345485 /locus_tag="AGROH133_08290" /db_xref="GeneID:10268123" CDS 2345210..2345485 /locus_tag="AGROH133_08290" /note="Protein of unknown function DUF1153" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279644.1" /db_xref="GI:325293780" /db_xref="GeneID:10268123" /translation="MTEMIRPRVKYVIGPDGSPLTIADLPPSNTRRWVIRRKAEVVAA VRGGLLSLEEACERYTLTVEEFLSWQSSIADHGLAGLRTTRIQQYRH" misc_feature 2345210..2345479 /locus_tag="AGROH133_08290" /note="Protein of unknown function (DUF1153); Region: DUF1153; pfam06627" /db_xref="CDD:148310" gene 2345706..2345987 /locus_tag="AGROH133_08291" /db_xref="GeneID:10268124" CDS 2345706..2345987 /locus_tag="AGROH133_08291" /EC_number="2.3.1.-" /note="Predicted acetyltransferase" /codon_start=1 /transl_table=11 /product="acetyltransferase protein" /protein_id="YP_004279645.1" /db_xref="GI:325293781" /db_xref="GeneID:10268124" /translation="MDIKTTETGSHGEYSATIDGHKAEMTYSRTSPSLIIIDHTGVPD ALRGKGVGQALAAHAIDEARKGGWKIIPLCPFFKAQTLRHPDWADVIKG" misc_feature 2345706..2345984 /locus_tag="AGROH133_08291" /note="N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357" /db_xref="CDD:197408" gene complement(2346198..2346401) /locus_tag="AGROH133_08292" /db_xref="GeneID:10268125" CDS complement(2346198..2346401) /locus_tag="AGROH133_08292" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279646.1" /db_xref="GI:325293782" /db_xref="GeneID:10268125" /translation="MARQYIDCREFPSDSKCSIAISADTPEELMEAAVQHAVAVHGAE DTPEFRAEVRRSIHAGTPPLKVA" gene complement(2346714..2347064) /locus_tag="AGROH133_08293" /db_xref="GeneID:10268126" CDS complement(2346714..2347064) /locus_tag="AGROH133_08293" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279647.1" /db_xref="GI:325293783" /db_xref="GeneID:10268126" /translation="MKSRDSLVRLKEFQVNEKRRQLSQLQQMMSEFERMAKELVHQIS LEESKSGITDPTHFAYPTFAKAARQRADNLQVSIRELKTQQEAAEASLEEVQAEYEKA AALENRDGAIRARA" gene 2347546..2348250 /gene="ctrA" /locus_tag="AGROH133_08294" /db_xref="GeneID:10268127" CDS 2347546..2348250 /gene="ctrA" /locus_tag="AGROH133_08294" /note="Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="cell cycle transcriptional regulator ctrA" /protein_id="YP_004279648.1" /db_xref="GI:325293784" /db_xref="GeneID:10268127" /translation="MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYD YDIILLDLNLPDMSGYEVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKP FHKDELVARIHAIVRRSKGHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLEL LSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRG YVLREPDGATEFLETA" misc_feature 2347546..2348220 /gene="ctrA" /locus_tag="AGROH133_08294" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 2347555..2347893 /gene="ctrA" /locus_tag="AGROH133_08294" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2347564..2347569,2347696..2347698,2347720..2347722, 2347780..2347782,2347837..2347839,2347846..2347851) /gene="ctrA" /locus_tag="AGROH133_08294" /note="active site" /db_xref="CDD:29071" misc_feature 2347696..2347698 /gene="ctrA" /locus_tag="AGROH133_08294" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2347705..2347710,2347714..2347722) /gene="ctrA" /locus_tag="AGROH133_08294" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2347846..2347854 /gene="ctrA" /locus_tag="AGROH133_08294" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 2347924..2348208 /gene="ctrA" /locus_tag="AGROH133_08294" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(2347996..2347998,2348053..2348058,2348110..2348112, 2348119..2348121,2348143..2348148,2348182..2348184, 2348197..2348199) /gene="ctrA" /locus_tag="AGROH133_08294" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 2348333..2348848 /locus_tag="AGROH133_08295" /db_xref="GeneID:10268128" CDS 2348333..2348848 /locus_tag="AGROH133_08295" /EC_number="2.3.1.-" /note="GCN5-related N-acetyltransferase; Acetyltransferases, including N-acetylases of ribosomal proteins" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004279649.1" /db_xref="GI:325293785" /db_xref="GeneID:10268128" /translation="MDHSIPTLRTERLILRPQIMADFPAYRDFMASTRSIGVGGPYDL PSTWGVFCHDLANWHFFGHGALMIELGETGQCIGQVGINHGPLFPEKELGWLLYGGQE GHGYAAEAASALRDWAFETLQLQTLVSYVSPRNSKSAAVAQRLGGVIDPSAPRSDPED LAYRYHPQKVA" misc_feature 2348345..2348830 /locus_tag="AGROH133_08295" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" gene complement(2348899..2349945) /locus_tag="AGROH133_08296" /db_xref="GeneID:10268129" CDS complement(2348899..2349945) /locus_tag="AGROH133_08296" /note="Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II; Predicted dienelactone hydrolase" /codon_start=1 /transl_table=11 /product="dienelactone hydrolase" /protein_id="YP_004279650.1" /db_xref="GI:325293786" /db_xref="GeneID:10268129" /translation="MRYFLGVAIAILSTAAPVMAENAIGFRQLELPDDSGTRMLNLSL WYPSAPSGKTETVGENAAFYGLEVQPDASFLAGSRPLVLLSHGFGGSWRNLNWIAGEL VQQGYIVAAPDHAGESFTEENAMEIVPLWERPRDISRTLTALLDNDQLAGKIDRARIA VIGHSLGGWTAMELTGARYSADLALKDCNAEKVLPQCKAPRLLAKVGIVNGGKADPRL SMDLRDARIRAVIALDAGPAAGFLPETLKRVDVPVLVLAAGVETPEIAAIKADSEYIA RNLPKATTVYREIPDASHFSFMQTCKPNGEKIVEELSPGEGFVCRDGGGRDRLAIHRQ IAEAIVGFLNVEMH" misc_feature complement(<2349427..>2349717) /locus_tag="AGROH133_08296" /note="Chlorophyllase enzyme; Region: Chlorophyllase2; cl14889" /db_xref="CDD:196850" misc_feature complement(2348905..2349708) /locus_tag="AGROH133_08296" /note="Predicted dienelactone hydrolase [General function prediction only]; Region: COG4188" /db_xref="CDD:33923" gene complement(2350068..2350595) /locus_tag="AGROH133_08298" /db_xref="GeneID:10268130" CDS complement(2350068..2350595) /locus_tag="AGROH133_08298" /EC_number="2.3.1.-" /note="Acetyltransferases, including N-acetylases of ribosomal proteins" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004279651.1" /db_xref="GI:325293787" /db_xref="GeneID:10268130" /translation="MTRLTTARLVLRPHAITDEALYCAFWSADVRPIEGVTSITPLDP EIAFARLLRFIGHWSVFGFGPFVVEEASSGRIVGEVGFAHMRRGNGTDFDGVPEAMWK IDADLNGKGVATEAVAAATGWFDRSGISQRTVCMIDPLNTPSLVIAARFGFRLFRDST FRGNPIRLFERVVGV" misc_feature complement(2350095..2350595) /locus_tag="AGROH133_08298" /note="Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670" /db_xref="CDD:31856" gene complement(2350682..2351329) /locus_tag="AGROH133_08299" /db_xref="GeneID:10268131" CDS complement(2350682..2351329) /locus_tag="AGROH133_08299" /note="Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279652.1" /db_xref="GI:325293788" /db_xref="GeneID:10268131" /translation="MTSKLNITLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGG TDDDALDLIRTSALNASVRLKFARLAFGASGSAGASIDTGEAEKAAKDFAAAEKKAEV TWNGPRAIVAKNRVKLLLNLFLVSYSAIPRGGNVDVVLEDPEGDAKFEITVKGKMMRI PAKFAEIYEGRLEEAVDAHSVQPYYTLLLAEEADMAVEYKVHEDRIVFTAKTVAA" misc_feature complement(2350688..2351329) /locus_tag="AGROH133_08299" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5385" /db_xref="CDD:34947" gene 2351580..2352176 /locus_tag="AGROH133_08300" /db_xref="GeneID:10268132" CDS 2351580..2352176 /locus_tag="AGROH133_08300" /note="Uncharacterised conserved protein UCP033924, Protein of unknown function (DUF1134); Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279653.1" /db_xref="GI:325293789" /db_xref="GeneID:10268132" /translation="MTMRLTKTRTIARLGLGKIFALLASLLMWAAPASAQNSDQYSFQ EVVDAGHGFFGETTGGLAKVVERAFQQYGLPNGYILGQEGSGAFVAGLTYGEGTLYTK NAGQHPVFWQGPSLGLDYGGQGTRAMMLVYNLPSVDSLYRRYGGVSGSAFIVAGVGMT YLKSSDVTLAPIRTGIGARLGINVGYLKLTQEPTWNPF" misc_feature 2351580..2352173 /locus_tag="AGROH133_08300" /note="Protein of unknown function (DUF1134); Region: DUF1134; cl02235" /db_xref="CDD:154813" gene 2352320..2353519 /locus_tag="AGROH133_08303" /db_xref="GeneID:10268133" CDS 2352320..2353519 /locus_tag="AGROH133_08303" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279654.1" /db_xref="GI:325293790" /db_xref="GeneID:10268133" /translation="MIEYAILFGLGFLTATLLALLIAPAIHRRIVAYTENRLRATMPI SPQEVRAQKDMARALYAAENAKVRQELDTEREKNTSLRLANEAASSDAYRLGEQNRGL LLKIEELTLEIGELRGALDASEERASAIQANLLEQEQAANARAGQMSEITARLTNLTR ELDDSKILAATRDLEAEQAKQTASRFRKEGETATRELQDVAARNKEAMTAVARESRKV TRLEEQIASVMAKNADLDTMLTLRNQEVARLKEQLAATGGRADDMIIRLPNPAVLNGE TASQPQKAPVLPEIAPVVAADTAPASTALEPAVPPPEGLEQEIEDIRNQGTALTERLL NVRGTGNDEPIRREIARIAAQMIALTAAQEGEKSPIPGLLAKAAASTGRESLAKRASV LMEKRKG" misc_feature <2352668..>2353108 /locus_tag="AGROH133_08303" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:162739" gene complement(2353739..2354611) /locus_tag="AGROH133_08305" /db_xref="GeneID:10268134" CDS complement(2353739..2354611) /locus_tag="AGROH133_08305" /EC_number="2.1.1.-" /note="tRNA/rRNA methyltransferase, SpoU; rRNA methylases" /codon_start=1 /transl_table=11 /product="RNA methylase" /protein_id="YP_004279655.1" /db_xref="GI:325293791" /db_xref="GeneID:10268134" /translation="MPSEDIDPAGAHALLDGRALIPVEDPADPRIAAFRDIRERDLTG RQGRFIAEGTVVLRMLAAAHKAGGAFAAESILILKNRLSGVADILADFPPDVPVYVAE APVLDGIVGFHLHRGILALGRRVRDITLDGLTDALPASSLVLVGCGISNHDNLGAMFR NAAAFYADAVFLDETSCDPLYRKALRVSVGSVLSVPYHRGGGAVQMLERLSQAGFAIW SLSPNGETEIRDIPRSDRMALVIGTEGEGLPQSVLSRFHTARIAQSPQLDSLNAGTAS GLALYQMAGAIGRV" misc_feature complement(2353763..2354545) /locus_tag="AGROH133_08305" /note="rRNA methylases [Translation, ribosomal structure and biogenesis]; Region: SpoU; COG0566" /db_xref="CDD:30912" misc_feature complement(2353769..2354191) /locus_tag="AGROH133_08305" /note="SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362" /db_xref="CDD:193788" gene complement(2354601..2354993) /locus_tag="AGROH133_08306" /db_xref="GeneID:10268135" CDS complement(2354601..2354993) /locus_tag="AGROH133_08306" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279656.1" /db_xref="GI:325293792" /db_xref="GeneID:10268135" /translation="MTHIEQDEQEDKPLDPAMDKVRRKMIRLQIVSGSVMFISLMAVF GAVVYKAVGPSKTVVTQSVPENLAVPTGNGPLAVTASLPQGFTIDNVSYSGGDMLFYG KLANGTRKALVFNVAAGRFLADVTVDAQ" gene 2355032..2356054 /gene="rluD" /locus_tag="AGROH133_08308" /db_xref="GeneID:10268136" CDS 2355032..2356054 /gene="rluD" /locus_tag="AGROH133_08308" /EC_number="4.2.1.70" /note="Pseudouridine synthase, RluD; Pseudouridylate synthases, 23S RNA-specific" /codon_start=1 /transl_table=11 /product="ribosomal large subunit pseudouridine synthase D" /protein_id="YP_004279657.1" /db_xref="GI:325293793" /db_xref="GeneID:10268136" /translation="MNDPFKQGGDARKVLIAGEDAEGRIDVWLAGEVGGDLSRSRLKA LIEQGAVLLNGTPVTEPKKKVHPHDRVEIVMPEPEDPEPKGEDIPLDVEYEDDDLIVL VKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLDKETSGVMVVAK NDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTIDAALGRGADRTKRAVKRE DTDDAREAITHYEVMERFHEKADASCLASMVECRLETGRTHQIRVHMAHIGHPLIGDP EYGAAFRTKANLLEEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDMPDDMEEL LIALRS" misc_feature 2355101..2356048 /gene="rluD" /locus_tag="AGROH133_08308" /note="pseudouridine synthase, RluA family; Region: rluA_subfam; TIGR00005" /db_xref="CDD:161659" misc_feature 2355101..2355337 /gene="rluD" /locus_tag="AGROH133_08308" /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165" /db_xref="CDD:29105" misc_feature order(2355101..2355103,2355140..2355145,2355149..2355154, 2355158..2355163,2355170..2355175,2355179..2355181, 2355200..2355223,2355227..2355229) /gene="rluD" /locus_tag="AGROH133_08308" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:29105" misc_feature 2355326..2355967 /gene="rluD" /locus_tag="AGROH133_08308" /note="PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF...; Region: PseudoU_synth_RluCD_like; cd02869" /db_xref="CDD:30029" misc_feature order(2355467..2355478,2355815..2355817) /gene="rluD" /locus_tag="AGROH133_08308" /note="active site" /db_xref="CDD:30029" gene 2356057..2356305 /locus_tag="AGROH133_08309" /db_xref="GeneID:10268137" CDS 2356057..2356305 /locus_tag="AGROH133_08309" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279658.1" /db_xref="GI:325293794" /db_xref="GeneID:10268137" /translation="MPHGEVKKTTPCILPEATENKKRLADSDIPHMVFLVDRPNSASI VAPLRSPESLKSSPRMPWPDLGLAERQTLQGTPFYPQS" gene 2356339..2357163 /locus_tag="AGROH133_08310" /db_xref="GeneID:10268138" CDS 2356339..2357163 /locus_tag="AGROH133_08310" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279659.1" /db_xref="GI:325293795" /db_xref="GeneID:10268138" /translation="MNTDERQFIFQELRSVEGYIDPPDALVFKALLQAQTRDGLKGGM AEIGVYYGRSYFLLRKFAQPQEKVLGVDLFELDPPSDGSLDQYDRLMENGRRLGFAMD EDLIIKGDSTRLAPTDITSRTGPVRFFSIDGGHHLHHVLADAKLALEVIAPHGVIVFD DTFNPAWPEVTVGVADFLRTHGHSLACFAMTKYKTYVCRREFHAVYADAIASGPDLQT LDHVETEFLGSRVVRLHNPTRRRVMYELMVRSGLGGFSERIYRSKVKQVKEGVAGT" gene 2357329..2358231 /gene="rpoH" /locus_tag="AGROH133_08311" /db_xref="GeneID:10268139" CDS 2357329..2358231 /gene="rpoH" /locus_tag="AGROH133_08311" /note="binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma-32 factor" /protein_id="YP_004279660.1" /db_xref="GI:325293796" /db_xref="GeneID:10268139" /translation="MARNSLPTITAGEAGLNRYLDEIRKFPMLEPQEEYMLGKRYAEH GDRDAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDPERGFRLA TYAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFNLRRLKGRIQAIDDGDLKPEHVK EIATKLQVSEEEVISMNRRLHGDASLNAPIKASEGESGQWQDWLVDDHESQEAVLIEQ DELETRRRMLAKAMGVLNDRERRIFEARRLAEDPVTLEELSSEFDISRERVRQIEVRA FEKVQEAVQKEALEAARALRVVDA" misc_feature 2357329..2358192 /gene="rpoH" /locus_tag="AGROH133_08311" /note="RNA polymerase factor sigma-32; Reviewed; Region: PRK06596" /db_xref="CDD:180635" misc_feature 2357485..2357691 /gene="rpoH" /locus_tag="AGROH133_08311" /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542" /db_xref="CDD:146937" misc_feature 2358001..2358171 /gene="rpoH" /locus_tag="AGROH133_08311" /note="Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial...; Region: Sigma70_r4; cd06171" /db_xref="CDD:100119" misc_feature order(2358034..2358036,2358064..2358066,2358088..2358093, 2358121..2358123,2358127..2358132,2358136..2358144, 2358148..2358153,2358157..2358159) /gene="rpoH" /locus_tag="AGROH133_08311" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:100119" gene complement(2358484..2360787) /locus_tag="AGROH133_08313" /db_xref="GeneID:10268140" CDS complement(2358484..2360787) /locus_tag="AGROH133_08313" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279661.1" /db_xref="GI:325293797" /db_xref="GeneID:10268140" /translation="MADFVAVIRKAVDGLANNTPENRAKVYDKARSAVVRQLENMKPR PPEELLRRQIAKLDAAIAEVDSEYAEALPALEEDDAFSPVAEEVDAVYHPQDVAEEPA VHAAERYEPVEEEPAPVVPAHSEPVYPVQPEPVYEEPAREEEPLPEEPVAALIPHEEQ HYGAREPEELYDAPEPARVAPVHEAGPYEEAGTYFTRAHEEPAYQPEDERVDDVAPEA AAPHADDSVPPHWAQPVDEDDWRKLEEAQDEDVRPAAEAEVGHERDDHSVVAGYSAQH YQAPDVSFEPERRDGNEHAGYRAAADHDPIFGGHDDFSEPRQTEDTAPKKAAVVEDFS SYFEDTDLAIPPKATPALPRADNDPFDDRASKDNKERTPWDDLDELIGYDGASSSSRA TTNEMPALGAGAATPAYMVKKKPRRNYASLVLALVGAGLLAGGGYALWLNRDALNDMV GGLVQSAQKDGGTQTPPANTAQTPTSTPPAAQQPPASGQQPTTSPTNHQAQPHADDGS VTGTKFTQRLLADGTERDEGPAPGANGQPVTAEGQSVYEQNVAPPPAGEAPANTAAGT PAGTPPAQPPAAAAAATGDRMFLYEEVLGQTVPTAIQGSVSWSLQQENDNEGRPSATV QGQITVPGRGLSALITFKRNTDPSLPASHLIEIVFSVSPGFEGGAIDSVQRIAMKSTE QDRGNALIAVPAKITDDFHMIALNDFPDAMKTNLELLKSRNWIDIPVSYRNGRRALLT LQKGNDGIAAFDTALREWAAAKPATGQ" gene complement(2360858..2362156) /gene="purA" /locus_tag="AGROH133_08315" /db_xref="GeneID:10268141" CDS complement(2360858..2362156) /gene="purA" /locus_tag="AGROH133_08315" /EC_number="6.3.4.4" /note="catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; Adenylosuccinate synthase" /codon_start=1 /transl_table=11 /product="adenylosuccinate synthetase" /protein_id="YP_004279662.1" /db_xref="GI:325293798" /db_xref="GeneID:10268141" /translation="MTNVVVVGSQWGDEGKGKIVDWLSERADVVVRYQGGHNAGHTLV IDGISYKLSLLPSGVVRPGKLAVIGNGVVVDPHALIAEIGRLEVQGVKVTPENLRIAD NATLILSLHRELDGMREDAASNSGTKIGTTRRGIGPAYEDKVGRRAIRVMDLADMEAL SAKVDRILTHHNALRRGFGAAEVSHETIMEELSSVAERILPFSETVWLLLDKKRRAGA RILFEGAQGSLLDIDHGTYPYVTSSNTVAGQAAAGSGMGPGSLGYILGITKAYTTRVG EGPFPTELHDEIGQFLGEKGHEFGTVTGRKRRCGWFDAALVRQSVATNGITGIALTKL DVLDGLDELKICVGYKLDGQEIDHLPASQGAQARVEPIYVTLEGWKESTVGARKWADL PAQAIKYVRQVEELIGAPVALLSTSPERDDTILVTDPFED" misc_feature complement(2360861..2362156) /gene="purA" /locus_tag="AGROH133_08315" /note="adenylosuccinate synthetase; Provisional; Region: PRK01117" /db_xref="CDD:179227" misc_feature complement(2360903..2362150) /gene="purA" /locus_tag="AGROH133_08315" /note="Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-...; Region: AdSS; cd03108" /db_xref="CDD:73337" misc_feature complement(order(2360903..2360908,2361152..2361154, 2361158..2361160,2362025..2362027,2362031..2362039, 2362106..2362114,2362118..2362120)) /gene="purA" /locus_tag="AGROH133_08315" /note="GDP-binding site [chemical binding]; other site" /db_xref="CDD:73337" misc_feature complement(order(2362034..2362036,2362103..2362105, 2362112..2362114)) /gene="purA" /locus_tag="AGROH133_08315" /note="ACT binding site; other site" /db_xref="CDD:73337" misc_feature complement(order(2361434..2361436,2361479..2361481, 2361767..2361769,2361776..2361778,2362043..2362045)) /gene="purA" /locus_tag="AGROH133_08315" /note="IMP binding site; other site" /db_xref="CDD:73337" gene 2362398..2363285 /locus_tag="AGROH133_08316" /db_xref="GeneID:10268142" CDS 2362398..2363285 /locus_tag="AGROH133_08316" /note="Protein of unknown function DUF6, transmembrane; Permeases of the drug/metabolite transporter (DMT) superfamily" /codon_start=1 /transl_table=11 /product="permease" /protein_id="YP_004279663.1" /db_xref="GI:325293799" /db_xref="GeneID:10268142" /translation="MPSKAYLALIIATLCWGGNTVAGKLAVGHISPMAFTFLRWVLAV AIIFAISVPQLIKDWPVVKKRLPYFFVLGSIGYTAFNVFLYTALQHTSAINAAVIQAG IPMVIFVLNFILFRTRVLFGQIAGFCLTIAGVALLASHGDPVSLLQLEMNAGDAIMLL AVLVYAIYTVILRWKPIVDWRTLMAIPAFFALLTSVPLVFWEISRDNVVWPDQRGWVL VVYAAIFASLIAQILYIKGVEQIGANRAGLFINLVPVFGTLLSVIVLSETLHPYQIAA LVMALAGIAVAERKKSPAS" misc_feature 2362437..2362808 /locus_tag="AGROH133_08316" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" misc_feature 2362455..2363246 /locus_tag="AGROH133_08316" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:162128" misc_feature 2362935..2363255 /locus_tag="AGROH133_08316" /note="EamA-like transporter family; Region: EamA; cl01037" /db_xref="CDD:194015" gene complement(2363339..2363872) /locus_tag="AGROH133_08327" /db_xref="GeneID:10268143" CDS complement(2363339..2363872) /locus_tag="AGROH133_08327" /note="transglutaminase-like cysteine peptidase, BTLCP; Predicted transglutaminase-like cysteine proteinase" /codon_start=1 /transl_table=11 /product="transglutaminase-like cysteine peptidase, BTLCP" /protein_id="YP_004279664.1" /db_xref="GI:325293800" /db_xref="GeneID:10268143" /translation="MLKKIIAAAICGIAIASMSTHADAAGAAGFARSFAAAEKSAVTQ IGISAPGGFDGCVLSAGQCVSTIAAPLTGERRDELLRVNRDVNATMGALDDYFSGFSA DVPATPSVSANDCGDCAAIKRTALAGAGWSSAALRLAFLLDDDGSLEKVLVVTTDKGD IVLGNAAFSPVERETAL" misc_feature complement(2363345..2363761) /locus_tag="AGROH133_08327" /note="Bacterial protein of unknown function (DUF920); Region: DUF920; cl01479" /db_xref="CDD:154425" gene complement(2364106..2364408) /locus_tag="AGROH133_08329" /db_xref="GeneID:10268144" CDS complement(2364106..2364408) /locus_tag="AGROH133_08329" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279665.1" /db_xref="GI:325293801" /db_xref="GeneID:10268144" /translation="MAFFSGNGIAGIPAHPRSHKAAYASPIPVIQRARGARWAGQAAK TGEFPDVTVEAAGMCSSSKQEPVWRAGHMLKPGPHRLQNPTTPFDTPAAMRPLYRF" gene 2364555..2365139 /locus_tag="AGROH133_08331" /db_xref="GeneID:10268145" CDS 2364555..2365139 /locus_tag="AGROH133_08331" /note="Lytic transglycosylase-like, catalytic; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279666.1" /db_xref="GI:325293802" /db_xref="GeneID:10268145" /translation="MRGVFAVVLLMTVLAGCATAPSQVTNACAIFEQRNGLFNNWRRD ARAAEREFGVPVPVMMATIYTESAFRPYARPPRTKLFGFIPWTRQSTAYGYAQALDGT WEVYKRETGRWSASRTDFTDAIHFVGWYHAKSRRENGIALNDPYNLYLAYYSGHAGYA KGSWRNNSAVQKAARRSANMALRYEAQLQQCGYR" misc_feature 2364720..2365049 /locus_tag="AGROH133_08331" /note="Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL). LTs catalyze...; Region: LT_GEWL; cd00254" /db_xref="CDD:29556" misc_feature order(2364750..2364752,2364849..2364851,2364942..2364944, 2365008..2365010) /locus_tag="AGROH133_08331" /note="N-acetyl-D-glucosamine binding site [chemical binding]; other site" /db_xref="CDD:29556" misc_feature 2364750..2364752 /locus_tag="AGROH133_08331" /note="catalytic residue [active]" /db_xref="CDD:29556" gene complement(2365257..2365871) /locus_tag="AGROH133_08333" /db_xref="GeneID:10268146" CDS complement(2365257..2365871) /locus_tag="AGROH133_08333" /note="Predicted esterase" /codon_start=1 /transl_table=11 /product="esterase/lipase/thioesterase protein" /protein_id="YP_004279667.1" /db_xref="GI:325293803" /db_xref="GeneID:10268146" /translation="MTKDAYFHKSRAGVAGAPLFVVLHGTGGDENQFFDFGSGLLPNA TIVSPLGDVAEHGAARFFRRTGEGVYDMADLERATAKLADFVKANREHYQAGPVIGLG FSNGANILANVLIEQPELFDAAVLMHPLIPFEPQAAAAKSSRRVLITAGERDPICPVP LTKALEKSLEAQGGTVKTVWHPGGHEIRSNEIEAVREFLAPYGG" misc_feature complement(2365260..2365871) /locus_tag="AGROH133_08333" /note="Predicted esterase [General function prediction only]; Region: COG0400" /db_xref="CDD:30749" misc_feature complement(2365311..>2365691) /locus_tag="AGROH133_08333" /note="Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031" /db_xref="CDD:197440" gene complement(2366041..2366985) /locus_tag="AGROH133_08334" /db_xref="GeneID:10268147" CDS complement(2366041..2366985) /locus_tag="AGROH133_08334" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="aromatic compounds dioxygenase" /protein_id="YP_004279668.1" /db_xref="GI:325293804" /db_xref="GeneID:10268147" /translation="MLNQIKGLHHVTSMAGSARQNNGFFTDTLGLRRVKKTVNFDAPD VYHLYYGDEVGTPGSVMTYFPFPHIARGRPGTGEVGTTLFSVPEGSLGYWQDRLSKAG VDGLKADEAFGNKRLHFAGPDGDGFALVEIKDDARSQWTGNGVSADQAIHGFQGASLR LRDEGATAELLKFMGYEEVDRQDGVLRLGMPGGNGADVIDIETMPNISGARLGAGSVH HIAFAVENREKQLEVRKALMDTGYQVTPVIDRDYFWAIYFRTPGGVLFEVATNEPGFD RDEDTAHLGEALKLPTQHAHLRAQLEKQLEPLGDEKAV" misc_feature complement(2366596..2366967) /locus_tag="AGROH133_08334" /note="N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins; Region: PcpA_N_like; cd08346" /db_xref="CDD:176694" misc_feature complement(order(2366950..2366952,2366956..2366958)) /locus_tag="AGROH133_08334" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:176694" misc_feature complement(2366062..2366529) /locus_tag="AGROH133_08334" /note="C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins; Region: PcpA_C_like; cd08347" /db_xref="CDD:176695" misc_feature complement(order(2366185..2366187,2366329..2366331)) /locus_tag="AGROH133_08334" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:176695" gene complement(2367151..2368221) /locus_tag="AGROH133_08335" /db_xref="GeneID:10268148" CDS complement(2367151..2368221) /locus_tag="AGROH133_08335" /note="Siderophore-interacting protein" /codon_start=1 /transl_table=11 /product="iron-chelator utilization protein" /protein_id="YP_004279669.1" /db_xref="GI:325293805" /db_xref="GeneID:10268148" /translation="MSLLSAETSVSLSDPASIVDAFEDHFSEHMEMEREGTTVRFKAE YGHGSFSAEGGRFAARVSCVSEHILTSVKAMVAEHIVEFSGKTGLDFRWSGHGAYQRE LPNLFVGKVARAYNLTPHMRRLVVSVESGIERLVTGGMHVRLLLVPDQARAAVWPYLA PTGAIVWPAGDDLLTRRVYTIRSGDVGRGEVDIDFVMHEGDDMPGANFGATAKPGDVL GIIGPSGTCPEAERYVFAGDETALPVMLRMAAEMPVGKTLSVYAEIDNEAERQEIVCA ANVEWTWLYRRGKPAGTSGLIEQALRGHAWTGEHDGLHVFVACEKSEARAAKSFLTDE IAFPKASLRAVGYWSMGLADDH" misc_feature complement(2367154..2367957) /locus_tag="AGROH133_08335" /note="Siderophore-interacting protein [Inorganic ion transport and metabolism]; Region: ViuB; COG2375" /db_xref="CDD:32522" misc_feature complement(2367178..2367891) /locus_tag="AGROH133_08335" /note="Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from...; Region: siderophore_interacting; cd06193" /db_xref="CDD:99790" misc_feature complement(order(2367178..2367183,2367502..2367504, 2367604..2367615,2367628..2367630,2367634..2367636, 2367640..2367642,2367682..2367693)) /locus_tag="AGROH133_08335" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99790" misc_feature complement(order(2367682..2367687,2367691..2367693)) /locus_tag="AGROH133_08335" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99790" misc_feature complement(order(2367577..2367579,2367595..2367597, 2367604..2367606,2367613..2367615)) /locus_tag="AGROH133_08335" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99790" misc_feature complement(order(2367262..2367267,2367427..2367435, 2367499..2367504)) /locus_tag="AGROH133_08335" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99790" gene complement(2368349..2369041) /gene="ung" /locus_tag="AGROH133_08336" /db_xref="GeneID:10268149" CDS complement(2368349..2369041) /gene="ung" /locus_tag="AGROH133_08336" /EC_number="3.2.2.-" /note="Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Uracil DNA glycosylase" /codon_start=1 /transl_table=11 /product="uracil-DNA glycosylase" /protein_id="YP_004279670.1" /db_xref="GI:325293806" /db_xref="GeneID:10268149" /translation="MAEAGVKLEDSWKRVLSTEFASPYMQKLKDFLLAEKTAGKHIFP KGAEYFRALDLTPLDRVKVVILGQDPYHGVGQAHGLCFSVQPGVRIPPSLVNIYKELQ SDLGIRPVSHGFLERWAKQGVLLLNSVLTVEESRAASHQGQGWEKFTDAVIRAVNDEC EHVVFLLWGSYAQKKAAFVDQKKHLVLRSPHPSPLSAHNGFFGNGHFSKANAFLVSHG REPIDWQLPETA" misc_feature complement(2368364..2369026) /gene="ung" /locus_tag="AGROH133_08336" /note="Uracil DNA glycosylase superfamily; Region: UDG; cl00483" /db_xref="CDD:193838" gene complement(2369056..2369451) /gene="lguL" /locus_tag="AGROH133_08337" /db_xref="GeneID:10268150" CDS complement(2369056..2369451) /gene="lguL" /locus_tag="AGROH133_08337" /EC_number="4.4.1.5" /note="Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase and related lyases" /codon_start=1 /transl_table=11 /product="lactoylglutathione lyase" /protein_id="YP_004279671.1" /db_xref="GI:325293807" /db_xref="GeneID:10268150" /translation="MAKLIHSMVRVLEEKRSVEFYKQAFGLEIAERAEFENFTLIYLS NAEGDFELELTVNRGREVPYALGDGYGHLAVSVADVDAEHQRFIELGLSPGKIIEADH KGQPFAKYFFICDPDGYKIEVLQRGNRFK" misc_feature complement(2369080..2369442) /gene="lguL" /locus_tag="AGROH133_08337" /note="Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione; Region: Glyoxalase_I; cd07233" /db_xref="CDD:176659" misc_feature complement(order(2369086..2369088,2369095..2369097, 2369194..2369196,2369218..2369247,2369278..2369283, 2369293..2369298,2369302..2369304,2369317..2369319, 2369329..2369331,2369353..2369358,2369365..2369367, 2369374..2369376,2369383..2369388,2369395..2369400, 2369407..2369412,2369422..2369424,2369428..2369442)) /gene="lguL" /locus_tag="AGROH133_08337" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176659" misc_feature complement(order(2369086..2369088,2369092..2369094, 2369116..2369118,2369122..2369124,2369164..2369166, 2369236..2369238,2369281..2369283,2369287..2369289, 2369293..2369295,2369332..2369334,2369338..2369340, 2369347..2369349,2369422..2369424,2369434..2369436)) /gene="lguL" /locus_tag="AGROH133_08337" /note="active site" /db_xref="CDD:176659" misc_feature complement(order(2369086..2369088,2369236..2369238, 2369293..2369295,2369434..2369436)) /gene="lguL" /locus_tag="AGROH133_08337" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:176659" misc_feature complement(order(2369092..2369094,2369116..2369118, 2369122..2369124,2369164..2369166,2369281..2369283, 2369287..2369289,2369332..2369334,2369338..2369340, 2369347..2369349,2369422..2369424)) /gene="lguL" /locus_tag="AGROH133_08337" /note="glutathione binding site [chemical binding]; other site" /db_xref="CDD:176659" gene 2369711..2370067 /locus_tag="AGROH133_08338" /db_xref="GeneID:10268151" CDS 2369711..2370067 /locus_tag="AGROH133_08338" /note="Protein of unknown function DUF454; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279672.1" /db_xref="GI:325293808" /db_xref="GeneID:10268151" /translation="MRLLYLCLGWLMVATGIVGAFLPVLPTTPFLLLALWCFSRSSPK LEAWLLTHPRFGPSLRQWRERGAIARKAKIAALSAMCASYAAFWFLSDPPALRAAIVA AVMLGSALFIVTRPES" misc_feature 2369711..2370064 /locus_tag="AGROH133_08338" /note="Protein of unknown function (DUF454); Region: DUF454; cl01063" /db_xref="CDD:186315" gene complement(2370139..2370921) /gene="hmuV" /locus_tag="AGROH133_08342" /db_xref="GeneID:10268152" CDS complement(2370139..2370921) /gene="hmuV" /locus_tag="AGROH133_08342" /EC_number="3.6.3.34" /note="ABC transporter nucleotide-binding protein/ATPase (hemin); ABC-type hemin transport system, ATPase component" /codon_start=1 /transl_table=11 /product="hemin ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279673.1" /db_xref="GI:325293809" /db_xref="GeneID:10268152" /translation="MIRAENLTLIRSGRRLLDEVCVDLKPGKVNVIIGPNGAGKSTLM KVLSGEMRAEAGSVTYNDVALPLFTPVQLARIRAVLPQNTQLAFPFTALEIVRMGAVA QGSRAPEEQARRALARAGLCGFEQRSYNMLSGGEQQRVQFARALAQVPHPVENGEVRA LFLDEPTASLDIGHQIAVLETARDFAIGGGLVLAILHDLNLAAEFADQLIVMHGGRVT ASGPSLDTISDETIARVYGIGGVVGRLPARHIPYVLPQSRHR" misc_feature complement(2370151..2370921) /gene="hmuV" /locus_tag="AGROH133_08342" /note="ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; Region: COG4559" /db_xref="CDD:34201" misc_feature complement(2370259..2370915) /gene="hmuV" /locus_tag="AGROH133_08342" /note="ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC...; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214" /db_xref="CDD:72973" misc_feature complement(2370799..2370822) /gene="hmuV" /locus_tag="AGROH133_08342" /note="Walker A/P-loop; other site" /db_xref="CDD:72973" misc_feature complement(order(2370331..2370333,2370427..2370432, 2370676..2370678,2370796..2370804,2370808..2370813)) /gene="hmuV" /locus_tag="AGROH133_08342" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72973" misc_feature complement(2370676..2370687) /gene="hmuV" /locus_tag="AGROH133_08342" /note="Q-loop/lid; other site" /db_xref="CDD:72973" misc_feature complement(2370499..2370528) /gene="hmuV" /locus_tag="AGROH133_08342" /note="ABC transporter signature motif; other site" /db_xref="CDD:72973" misc_feature complement(2370427..2370444) /gene="hmuV" /locus_tag="AGROH133_08342" /note="Walker B; other site" /db_xref="CDD:72973" misc_feature complement(2370409..2370420) /gene="hmuV" /locus_tag="AGROH133_08342" /note="D-loop; other site" /db_xref="CDD:72973" misc_feature complement(2370325..2370345) /gene="hmuV" /locus_tag="AGROH133_08342" /note="H-loop/switch region; other site" /db_xref="CDD:72973" gene complement(2370918..2372006) /gene="hmuU" /locus_tag="AGROH133_08343" /db_xref="GeneID:10268153" CDS complement(2370918..2372006) /gene="hmuU" /locus_tag="AGROH133_08343" /note="Bacterial transport system permease protein; ABC-type Fe3+-siderophore transport system, permease component" /codon_start=1 /transl_table=11 /product="hemin ABC transporter transmembrane protein" /protein_id="YP_004279674.1" /db_xref="GI:325293810" /db_xref="GeneID:10268153" /translation="MSLAALSSTEGRVAGDRSRQGVITLAALVGILLFACGVSLVSGP TGVGISELWAYLTGSADQLDARDKVILEAVRLPRTALGMLIGAGLGVSGAMMQGLFRN PLADPGIVGVTSGAALFAVAAISLGEGALATVAVFFGPHFLPLMAFFGGLLNTWLLYV IATRDGATSTTTLILAGIAVAAISGALTGLMIFVADDRALRDITFWSLGSLGGATPAK VLATLPFIIVVLAIIPFVARGLDALILGDAAAFHMGIPVQRLKRVVILAVAAACGASV AAAGSIGFVGIVVPHLLRLAIGPSHRFLLPASALGGAALLLLADSFARTVAAPAELPI GVVTALIGAPVFLFLLLGRGGFSMRNMS" misc_feature complement(2370972..2371772) /gene="hmuU" /locus_tag="AGROH133_08343" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature complement(order(2371104..2371106,2371125..2371127, 2371248..2371256,2371260..2371277,2371281..2371286, 2371290..2371298,2371302..2371307,2371698..2371706, 2371716..2371718)) /gene="hmuU" /locus_tag="AGROH133_08343" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature complement(order(2370978..2370980,2370987..2370992, 2370999..2371001,2371155..2371157,2371383..2371385, 2371392..2371397,2371431..2371433,2371437..2371442, 2371449..2371451,2371458..2371463,2371470..2371475, 2371482..2371487,2371491..2371493,2371680..2371682, 2371695..2371697,2371701..2371703)) /gene="hmuU" /locus_tag="AGROH133_08343" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(2371008..2371010,2371035..2371037, 2371167..2371169,2371179..2371181,2371353..2371355, 2371431..2371433)) /gene="hmuU" /locus_tag="AGROH133_08343" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene complement(2372003..2372896) /gene="hmuT" /locus_tag="AGROH133_08353" /db_xref="GeneID:10268154" CDS complement(2372003..2372896) /gene="hmuT" /locus_tag="AGROH133_08353" /note="Periplasmic binding protein; ABC-type hemin transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="hemin ABC transporter substrate-binding protein" /protein_id="YP_004279675.1" /db_xref="GI:325293811" /db_xref="GeneID:10268154" /translation="MLNLSLRSFVFAALVPAVIAVAAPGARASDKGNPEAKRIVAVGG TVTEILYALGASDRIVARDSTSSYPADVLSKPDIGYMRALSSEGILSQKPDLILSEDG SGPADVVAILKASAVPFVTVDTPPSGDAIPRKIEDVGAAVGLADKAKALAAETKAGLD VLAKDVSAVPEKNRKRVLFVLSSAGGRIMAAGKGTEAAAIIEMAGGINAAQEISGYKP LTDEAVIASAPDVVLTMARGDHAGKADEIFALPAFQSTPAAAEKALISMDGLYLIGFG PRTPAAGRELAHKLYPDVVKP" misc_feature complement(2372084..2372791) /gene="hmuT" /locus_tag="AGROH133_08353" /note="Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a...; Region: HutB; cd01149" /db_xref="CDD:29752" misc_feature complement(2372090..2372782) /gene="hmuT" /locus_tag="AGROH133_08353" /note="Periplasmic binding protein; Region: Peripla_BP_2; pfam01497" /db_xref="CDD:144914" misc_feature complement(2372684..2372686) /gene="hmuT" /locus_tag="AGROH133_08353" /note="putative hemin binding site; other site" /db_xref="CDD:29752" gene 2373093..2373440 /locus_tag="AGROH133_08355" /db_xref="GeneID:10268155" CDS 2373093..2373440 /locus_tag="AGROH133_08355" /note="Dimeric alpha-beta barrel, Antibiotic biosynthesis monooxygenase; Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides" /codon_start=1 /transl_table=11 /product="antibiotic biosynthesis monooxygenase" /protein_id="YP_004279676.1" /db_xref="GI:325293812" /db_xref="GeneID:10268155" /translation="MFIAMNRFRVVPGYEDTFESIWRERKSHLSELPGYIEFHMLKGP KADDHTLYASHTVWATKDDFLSWTKSEQFRAAHAKAGENRGKVEYLSGPHFEGFDVII HEDKNGERRSIAA" misc_feature 2373093..2373419 /locus_tag="AGROH133_08355" /note="Antibiotic biosynthesis monooxygenase; Region: ABM; cl10022" /db_xref="CDD:195949" gene 2373450..2373971 /locus_tag="AGROH133_08356" /db_xref="GeneID:10268156" CDS 2373450..2373971 /locus_tag="AGROH133_08356" /note="Protein of unknown function DUF1008; Putative heme iron utilization protein" /codon_start=1 /transl_table=11 /product="heme utilization protein HuvX" /protein_id="YP_004279677.1" /db_xref="GI:325293813" /db_xref="GeneID:10268156" /translation="MSIAAQKTDDRQARAAAALAEKPDGIVEAIAAKAEVTSAEILAI LPQGAAVSAGSDQFDAIWNEMRGWGEVLMIVQTGDIVLEVPGDLPEGSESHGWFNIHG DSPIGGHIKKDNCTGITFVDRGFHGRRSCSVWFMNAAGGAMFKIFVRRDENKELRGDQ LAKFEALRDSFRG" misc_feature 2373510..2373968 /locus_tag="AGROH133_08356" /note="ChuX-like family; Region: DUF1008; cl01509" /db_xref="CDD:154443" gene 2374127..2374903 /locus_tag="AGROH133_08357" /db_xref="GeneID:10268157" CDS 2374127..2374903 /locus_tag="AGROH133_08357" /note="Protein of unknown function DUF306, Meta and HslJ; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279678.1" /db_xref="GI:325293814" /db_xref="GeneID:10268157" /translation="MNDRQPLLSRRNFAGLLALAPLFAAGGAAAAPASLRGSVSYRER IALPPGATVTVRLIDVSLADAPSQTIAETTIRPRGQVPVPFVLRYDDRDIRGRRSYAL SAEIREGDRLLFTTTRRYSVLAGGRDDTDLVLERVAAAPGRPEPQAGIEGRWLVQEIR GERVRGRREATLEISREGRVSGNAGCNGIGGEVKISRNRVDFGRMISTQMACAPDIMR QERQFIEALEGARSFRLEPRRGSLELIDGRGRPAMRLRRA" misc_feature <2374226..2374546 /locus_tag="AGROH133_08357" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3126" /db_xref="CDD:32940" misc_feature 2374466..2374900 /locus_tag="AGROH133_08357" /note="META domain; Region: META; cl01245" /db_xref="CDD:194076" gene 2375098..2375982 /gene="purU" /locus_tag="AGROH133_08360" /db_xref="GeneID:10268158" CDS 2375098..2375982 /gene="purU" /locus_tag="AGROH133_08360" /EC_number="3.5.1.10" /note="produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; Formyltetrahydrofolate hydrolase" /codon_start=1 /transl_table=11 /product="formyltetrahydrofolate deformylase" /protein_id="YP_004279679.1" /db_xref="GI:325293815" /db_xref="GeneID:10268158" /translation="MTTYVLTVACKSTRGIVAAISGYLAEKGCNIVDSSQFDDLETGK FFMRVSFISEEGATMQAITEGFQPVAEKFGMEARIYSDGQRMKTLLMVSRFGHCLNDL LYRWKIGALPIDIVGVVSNHFEYQKVVVNHDIPFHHIKVTKENKPQAEAQLMDLIETS GTELVVLARYMQVLSDNMCRKMSGRIINIHHSFLPSFKGANPYKQAYDRGVKLIGATA HYVTADLDEGPIIEQDTVRVTHAQSAEDYVSLGRDVESQVLARAIHAHIHHRTFINGN RTVVFPPSPGSYASERMG" misc_feature 2375098..2375943 /gene="purU" /locus_tag="AGROH133_08360" /note="formyltetrahydrofolate deformylase; Reviewed; Region: PRK13011" /db_xref="CDD:183839" misc_feature 2375110..2375325 /gene="purU" /locus_tag="AGROH133_08360" /note="N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); Region: ACT_F4HF-DF; cd04875" /db_xref="CDD:153147" misc_feature 2375353..2375940 /gene="purU" /locus_tag="AGROH133_08360" /note="Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Region: FMT_core_Formyl-FH4-Hydrolase_C; cd08648" /db_xref="CDD:187717" misc_feature order(2375371..2375373,2375386..2375391,2375596..2375619, 2375632..2375634,2375659..2375670,2375692..2375694, 2375752..2375754,2375758..2375763,2375770..2375775) /gene="purU" /locus_tag="AGROH133_08360" /note="putative active site [active]" /db_xref="CDD:187717" misc_feature order(2375386..2375391,2375599..2375604,2375662..2375664, 2375668..2375670,2375860..2375862) /gene="purU" /locus_tag="AGROH133_08360" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187717" misc_feature order(2375596..2375598,2375605..2375607,2375611..2375619, 2375632..2375634,2375659..2375661,2375758..2375763, 2375770..2375775) /gene="purU" /locus_tag="AGROH133_08360" /note="putative cosubstrate binding site; other site" /db_xref="CDD:187717" misc_feature order(2375659..2375661,2375665..2375667,2375773..2375775) /gene="purU" /locus_tag="AGROH133_08360" /note="catalytic site [active]" /db_xref="CDD:187717" gene 2376081..2376410 /locus_tag="AGROH133_08361" /db_xref="GeneID:10268159" CDS 2376081..2376410 /locus_tag="AGROH133_08361" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279680.1" /db_xref="GI:325293816" /db_xref="GeneID:10268159" /translation="MKKLVIAGAAFLIAAGSSFAQQPPPPPGPADAGSRVDAPPPPPP PGPGGPREAGWRDGPHGRRMPPPPSKAAHFRIEDGERKIDVKCADDEPMKACADIMMQ IIDKMNE" gene complement(2376453..2377829) /gene="tctE" /locus_tag="AGROH133_08363" /db_xref="GeneID:10268160" CDS complement(2376453..2377829) /gene="tctE" /locus_tag="AGROH133_08363" /EC_number="2.7.3.-" /note="Histidine kinase, Two-component sensor kinase N-terminal; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="sensor histidine kinase" /protein_id="YP_004279681.1" /db_xref="GI:325293817" /db_xref="GeneID:10268160" /translation="MRQAAYSLRRRLLGWLLISTAIIGCVALTDTWREAVNTANVVSD RVLSGSALAIAERVVVAEDGSLEVDIPYVALEMLTSAAQDRVFYRVDGPNGQFLTGYQ NLPTVENPAGETPAYRDAVFRDEPIRIAAIRRFASTGINSVPFSVTVAETTIARSQLA QAIILRSALRLLFMIVGAAIIVWIAVTISLRPLYRLSEAIAERSPNDLHPIRQSVPVE VENLVETVNSFMVRLQSALDALRHFTGNASHQLRTPLAIISTQLALSARAASLEDAQA AARKGGASVAHAEHILAQLLRMANIDAAGSSEKHDFSAIDLVAVAQNVTADFVPRAAD AGIDLGFEGEGEATILAEPLLIGELIGNLVSNAINYAGRGAEVTVRVGRQAGAVWLEV EDNGPGIPTEKRAIVRQRFARGEANAAPGAGLGLAIIEEIAGLFGGRLTLEDGAGGRG LRARVKFS" misc_feature complement(2377338..2377769) /gene="tctE" /locus_tag="AGROH133_08363" /note="Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521" /db_xref="CDD:149540" misc_feature complement(2376921..2377115) /gene="tctE" /locus_tag="AGROH133_08363" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cl00080" /db_xref="CDD:153499" misc_feature complement(2376624..>2376905) /gene="tctE" /locus_tag="AGROH133_08363" /note="sensory histidine kinase AtoS; Provisional; Region: PRK11360" /db_xref="CDD:183098" misc_feature complement(2376459..2376764) /gene="tctE" /locus_tag="AGROH133_08363" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2376471..2376473,2376477..2376482, 2376498..2376500,2376504..2376506,2376552..2376563, 2376633..2376638,2376642..2376644,2376648..2376650, 2376654..2376656,2376723..2376725,2376732..2376734, 2376744..2376746)) /gene="tctE" /locus_tag="AGROH133_08363" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2376732..2376734) /gene="tctE" /locus_tag="AGROH133_08363" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2376555..2376557,2376561..2376563, 2376636..2376638,2376642..2376644)) /gene="tctE" /locus_tag="AGROH133_08363" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2377826..2378524) /gene="tctD" /locus_tag="AGROH133_08365" /db_xref="GeneID:10268161" CDS complement(2377826..2378524) /gene="tctD" /locus_tag="AGROH133_08365" /note="Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004279682.1" /db_xref="GI:325293818" /db_xref="GeneID:10268161" /translation="MLREEELRILLVEDNQVLSEGLCALLRGSGYAVDVVSDGASADA AIAAENFDLVILDLNLPEMDGIEVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGAD DYMIKPFDITEFEARVRVLLRRNAGLRSSTLSFGKVLFDLTSRTFSADGRPLDIPARE VALLEVLFMRAGKVVAKEAIVQSLTGFDDEISGNAIEQYVSRLRRRLAPHGLTVKTAR GIGYYLEKLPEMAE" misc_feature complement(2377838..2378485) /gene="tctD" /locus_tag="AGROH133_08365" /note="DNA-binding transcriptional regulator BasR; Provisional; Region: PRK10643" /db_xref="CDD:182612" misc_feature complement(2378159..2378485) /gene="tctD" /locus_tag="AGROH133_08365" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2378201..2378206,2378213..2378215, 2378270..2378272,2378330..2378332,2378354..2378356, 2378483..2378485)) /gene="tctD" /locus_tag="AGROH133_08365" /note="active site" /db_xref="CDD:29071" misc_feature complement(2378354..2378356) /gene="tctD" /locus_tag="AGROH133_08365" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2378330..2378338,2378342..2378347)) /gene="tctD" /locus_tag="AGROH133_08365" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2378198..2378206) /gene="tctD" /locus_tag="AGROH133_08365" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2377853..2378128) /gene="tctD" /locus_tag="AGROH133_08365" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(2377862..2377864,2377877..2377879, 2377904..2377909,2377931..2377933,2377940..2377942, 2377994..2377999,2378054..2378056)) /gene="tctD" /locus_tag="AGROH133_08365" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 2378558..2379655 /locus_tag="AGROH133_08366" /db_xref="GeneID:10268162" CDS 2378558..2379655 /locus_tag="AGROH133_08366" /note="Prokaryotic extracellular metal-binding protein; ABC-type Fe3+ transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="iron ABC transporter substrate-binding protein" /protein_id="YP_004279683.1" /db_xref="GI:325293819" /db_xref="GeneID:10268162" /translation="MASACGMIFSMRIAVFLCLCLCMASPALAQVAVFPAPSGKADAE TLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAF SSAMDLQVKLSNDGYAQRSDLAMSARWPTWANWRNTAYALTFEPAVFVYHKPSFTTEK PPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGDIWSVIKAMGAA GVKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGL VPEAAANPALGRRYLEFFMSKEGQTIMARQLQIPAVSPDVAGENTANTMQAIHGAQLR PVPVSPGLMVYLDQVKRSRLIERWNEALRSQ" misc_feature 2378558..>2378872 /locus_tag="AGROH133_08366" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature 2378735..2379652 /locus_tag="AGROH133_08366" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2379908..2380852 /locus_tag="AGROH133_08369" /db_xref="GeneID:10268163" CDS 2379908..2380852 /locus_tag="AGROH133_08369" /note="Bordetella uptake gene (bug) product; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="tricarboxylic transport membrane protein" /protein_id="YP_004279684.1" /db_xref="GI:325293820" /db_xref="GeneID:10268163" /translation="MKHFLIGTFLAGVIALPAVAADYTIIAPANPGGGWDQTARSLQT VLQEEGISKSVQVQNVPGAGGTIGLAQFASQQKGNPNALIVGGYVMVGAILTNKAPVT LKEVTPIARLTGEYEAIVVPASSPLKTIGDLVDQLKKDPGSVSWGGGSAGGTDHIAVG LIAKAAGVDPTKINYIAYSGGGEALASILGSQVTAGISSYGEFESQVKAGTLRLLAVS SEEKLEGVDAPTLKESGLDVVVQNWRMVAAPPGLTPEQEKAVSADIEKLAKSAKWQET LKTKSWMDTYLSGDEFKAQLAKDTDATAAILKEIGLVK" misc_feature 2379908..2380849 /locus_tag="AGROH133_08369" /note="Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3181" /db_xref="CDD:32994" misc_feature 2380052..2380843 /locus_tag="AGROH133_08369" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2380849..2381343 /locus_tag="AGROH133_08371" /db_xref="GeneID:10268164" CDS 2380849..2381343 /locus_tag="AGROH133_08371" /codon_start=1 /transl_table=11 /product="tricarboxylic transport membrane protein" /protein_id="YP_004279685.1" /db_xref="GI:325293821" /db_xref="GeneID:10268164" /translation="MSQGSNPSQHQERRPDWAALAIAVALVLIACVIFWDSARLASVT GYSPVGPATVPYAIAFCLVGLALWTAIEAWRGDFPERDKQEVAPVIWVVAGLAAQMLL LNVAGFSIATGLLFAFTARAFGKRKLWYSIPIGIALSFVIWIIFARLLQLSLPAGPLE RLLF" misc_feature 2380948..2381313 /locus_tag="AGROH133_08371" /note="Tripartite tricarboxylate transporter TctB family; Region: TctB; pfam07331" /db_xref="CDD:191726" gene 2381451..2382968 /locus_tag="AGROH133_08376" /db_xref="GeneID:10268165" CDS 2381451..2382968 /locus_tag="AGROH133_08376" /note="Protein of unknown function DUF112, transmembrane; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279686.1" /db_xref="GI:325293822" /db_xref="GeneID:10268165" /translation="MSTFEFLLHGLEVAAQPMNLLYALIGVTLGTAVGVLPGIGPALT VALLLPVTYRLDPAGSLIMFAGIYYGGMYGGSTTSILLNTPGESASIVTALEGNKMAR AGRGGPALATAAIGSFVAGLIATVALAFVAPYIVKLALVFGPREYFALMVLAFVTVSS AFGDSALRGLTSLFIGFALAIVGIDQLTGQTRMSFGIPDLLDGVEVTTLAVAMFAIGE TLFIVAQGQSGDEKVEAVKGSVWMSAQDWARSWKPWLRGTLIGFPIGAMPAGGAEIGT FLSYATEKRLSKHPEEFGHGAIEGVAGPEAANNASAAGTLVPLLTLGLPTTATAAIML AGFQQFGLQPGPLLFATNPQLVWGLIASLFIANLMLLVLNLPLIGLWVKLLTIPKPWL YAGILLFATLGTIGANPSVFELGMLLAFGILGYIMRIFGYPIAPAVVGLILGPLAEQQ LRRALAIGQGDPTVLLTSPIAVGLFLVAAAAFIVPLIMRIRGRGEVLTQLAANED" misc_feature 2381451..2382962 /locus_tag="AGROH133_08376" /note="Tripartite tricarboxylate transporter TctA family; Region: TctA; cl00772" /db_xref="CDD:153985" gene 2383098..2383358 /locus_tag="AGROH133_08388" /db_xref="GeneID:10268166" CDS 2383098..2383358 /locus_tag="AGROH133_08388" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279687.1" /db_xref="GI:325293823" /db_xref="GeneID:10268166" /translation="MRKIAIMLVLGLAGCATAAPDVQPIPGSITYGGQPRTKLTKSPI GSTLSHEFVMGDGRLAIETYRIQPDRSLKLERREIVGDWPPN" gene 2383559..2384497 /locus_tag="AGROH133_08390" /db_xref="GeneID:10268167" CDS 2383559..2384497 /locus_tag="AGROH133_08390" /note="Periplasmic binding protein; ABC-type enterochelin transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="ABC transporter substrate-binding protein" /protein_id="YP_004279688.1" /db_xref="GI:325293824" /db_xref="GeneID:10268167" /translation="MAINFTFPVRLLAAAAFSLGAMTAGAEEMTIKHAQGETVLKAAP KKVLVLDIPSLDNLDAMGVEPAGVLGSNLPTYLQKYADGKYLKVGTLFEPDYEAINAA EADLVIVGGRSRAKYPDVAKITPAIDMSIDSKEFIASVKANITKLGDIFGKQEEAKKL DASIDEKVAKLKAIAPNSGTAMILVTNAGKVGVYGPSSRTGWLHTEIGFKPVAPDIDD RFDRGDVVSFEYLAEVNPEWLFVIDRDAGIGRATDPGKAAAQVLDNELIHQTNAWKKK QIVYLDPQAAYIVSSGYTALTTLLDQVYEAVSEKKS" misc_feature 2383559..2384482 /locus_tag="AGROH133_08390" /note="ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: CeuA; COG4607" /db_xref="CDD:34238" misc_feature 2383655..2384473 /locus_tag="AGROH133_08390" /note="Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins...; Region: FatB; cd01140" /db_xref="CDD:29743" misc_feature order(2383712..2383717,2383766..2383768,2383829..2383831, 2383886..2383888,2383892..2383894,2384132..2384134, 2384225..2384227) /locus_tag="AGROH133_08390" /note="putative ligand binding residues [chemical binding]; other site" /db_xref="CDD:29743" gene 2384617..2385582 /locus_tag="AGROH133_08392" /db_xref="GeneID:10268168" CDS 2384617..2385582 /locus_tag="AGROH133_08392" /note="Bacterial transport system permease protein; ABC-type enterochelin transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004279689.1" /db_xref="GI:325293825" /db_xref="GeneID:10268168" /translation="MKSLSLILALLLALTLAIVSLFVGVSNVSLATLFAPDTSADALR VLLVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFVEPSTAGTTESAGLGLLTVTLLA PETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY RFDLLQSLGAWMTGDFSGVLRGRYELLWIGFVFAIAAYLAADRFTVAGMGRDFTTNLG LNYRRVMALGLTIVSLVSAVVVVTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLG AVFVLACDIIGRTVRAPYEIPIGTVVGVIGSALFLYLLLRKRHHA" misc_feature 2384776..2385558 /locus_tag="AGROH133_08392" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature order(2384830..2384832,2384842..2384850,2385208..2385213, 2385217..2385225,2385229..2385234,2385238..2385255, 2385259..2385267,2385388..2385390,2385409..2385411) /locus_tag="AGROH133_08392" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature order(2384845..2384847,2384851..2384853,2384866..2384868, 2385028..2385030,2385034..2385036,2385040..2385042, 2385049..2385054,2385061..2385066,2385073..2385075, 2385082..2385087,2385091..2385093,2385121..2385126, 2385133..2385135,2385358..2385360,2385514..2385516, 2385523..2385528,2385535..2385537,2385544..2385549, 2385556..2385558) /locus_tag="AGROH133_08392" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(2385091..2385093,2385160..2385162,2385334..2385336, 2385346..2385348,2385478..2385480,2385505..2385507) /locus_tag="AGROH133_08392" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene 2385575..2386543 /locus_tag="AGROH133_08402" /db_xref="GeneID:10268169" CDS 2385575..2386543 /locus_tag="AGROH133_08402" /note="ABC transporter transmembrane protein; ABC-type enterochelin transport system, permease component" /codon_start=1 /transl_table=11 /product="ABC transporter transmembrane protein" /protein_id="YP_004279690.1" /db_xref="GI:325293826" /db_xref="GeneID:10268169" /translation="MHERHPDRRAKLVLLMLLALALISMAAFMTLGAKGSWSFILPFR GIKLLSLLLVAYAIAVSTVLFQTVTNNRILTPSVMGFDSLYVLVQTALIFVFGSATVV MIDPQLKFLAETALLVTFSALLYRWLFVGAERSLHLLVLVGIVFGVFFRSLSGFMQRV LDPNEYAVLQDVLFASFNSIDPTLLAVSAIIVGVVTIIGLRLLHTLDVLSLGRATAIS LGVDYKRTVTIILVLVSVLVAVSTALVGPVMFFGLLVAALAHYLTGNGKHAYVLPAAI LISIICLVGGQVVLERIFAFNTALSIIIEFLGGIVFIGLILKRGAR" misc_feature 2385662..2386540 /locus_tag="AGROH133_08402" /note="ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]; Region: CeuC; COG4605" /db_xref="CDD:34236" misc_feature 2385716..2386513 /locus_tag="AGROH133_08402" /note="Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist...; Region: TM_ABC_iron-siderophores_like; cd06550" /db_xref="CDD:119348" misc_feature order(2385770..2385772,2385782..2385790,2386172..2386177, 2386181..2386189,2386193..2386198,2386202..2386219, 2386223..2386231,2386352..2386354,2386376..2386378) /locus_tag="AGROH133_08402" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119348" misc_feature order(2385785..2385787,2385791..2385793,2385806..2385808, 2385986..2385988,2385992..2385997,2386004..2386009, 2386016..2386021,2386028..2386030,2386037..2386042, 2386046..2386048,2386082..2386087,2386094..2386096, 2386322..2386324,2386478..2386480,2386487..2386492, 2386499..2386501,2386508..2386513) /locus_tag="AGROH133_08402" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(2386046..2386048,2386124..2386126,2386298..2386300, 2386310..2386312,2386445..2386447,2386469..2386471) /locus_tag="AGROH133_08402" /note="putative PBP binding regions; other site" /db_xref="CDD:119348" gene 2386540..2387298 /locus_tag="AGROH133_08413" /db_xref="GeneID:10268170" CDS 2386540..2387298 /locus_tag="AGROH133_08413" /EC_number="3.6.3.34" /note="ABC transporter related; ABC-type enterochelin transport system, ATPase component" /codon_start=1 /transl_table=11 /product="ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279691.1" /db_xref="GI:325293827" /db_xref="GeneID:10268170" /translation="MIIASQITKSYGDTVVVDGVSVAIPAGGVTSIIGPNGAGKSTLL SIVARLMSMDAGTVTVDGLDVTKTPSDTLAKRLSILRQDNHISSRLTVRDLVGFGRYP YSKGRPTIEDKVHIDRALEYLHLENLSGRFLDELSGGQRQRAFVAMVLCQDTDYVLLD EPLNNLDMKHASSMMKIMRRAADELKKTVVLVLHDINFASWYSDTIIAMRDGRICRQG PAEQIIRPEVLREIYDMTISVNDIDGRRICLFYE" misc_feature 2386540..2387295 /locus_tag="AGROH133_08413" /note="ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CeuD; COG4604" /db_xref="CDD:34235" misc_feature 2386549..2387193 /locus_tag="AGROH133_08413" /note="ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC...; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214" /db_xref="CDD:72973" misc_feature 2386639..2386662 /locus_tag="AGROH133_08413" /note="Walker A/P-loop; other site" /db_xref="CDD:72973" misc_feature order(2386648..2386653,2386657..2386665,2386783..2386785, 2387017..2387022,2387119..2387121) /locus_tag="AGROH133_08413" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72973" misc_feature 2386774..2386785 /locus_tag="AGROH133_08413" /note="Q-loop/lid; other site" /db_xref="CDD:72973" misc_feature 2386945..2386974 /locus_tag="AGROH133_08413" /note="ABC transporter signature motif; other site" /db_xref="CDD:72973" misc_feature 2387005..2387022 /locus_tag="AGROH133_08413" /note="Walker B; other site" /db_xref="CDD:72973" misc_feature 2387029..2387040 /locus_tag="AGROH133_08413" /note="D-loop; other site" /db_xref="CDD:72973" misc_feature 2387107..2387127 /locus_tag="AGROH133_08413" /note="H-loop/switch region; other site" /db_xref="CDD:72973" gene 2387424..2387912 /gene="dps" /locus_tag="AGROH133_08414" /db_xref="GeneID:10268171" CDS 2387424..2387912 /gene="dps" /locus_tag="AGROH133_08414" /note="binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA-binding ferritin-like protein (oxidative damage protectant)" /codon_start=1 /transl_table=11 /product="DNA starvation/stationary phase protection protein Dps" /protein_id="YP_004279692.1" /db_xref="GI:325293828" /db_xref="GeneID:10268171" /translation="MKTHKTKNDLPSNAKSTVMGILNESLASVIDLALVTKQAHWNLK GPQFIAVHELLDTFRAQLDNHGDTIAERVVQLGGTALGSLQSVSSTTKLKAYPTDIYK IHDHLDELIARYGDVANMIRKAIDDSDEAGDPTTADIFTAASRDLDKALWFLEAHVQE KS" misc_feature 2387484..2387897 /gene="dps" /locus_tag="AGROH133_08414" /note="DPS protein, ferritin-like diiron-binding domain; Region: DPS; cd01043" /db_xref="CDD:153102" misc_feature 2387487..2387900 /gene="dps" /locus_tag="AGROH133_08414" /note="Ferritin-like domain; Region: Ferritin; pfam00210" /db_xref="CDD:189451" misc_feature order(2387520..2387525,2387535..2387537,2387541..2387546, 2387577..2387579,2387610..2387612,2387622..2387624, 2387631..2387636) /gene="dps" /locus_tag="AGROH133_08414" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153102" misc_feature order(2387541..2387543,2387577..2387579,2387589..2387591, 2387622..2387624,2387634..2387636) /gene="dps" /locus_tag="AGROH133_08414" /note="DPS ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153102" misc_feature order(2387823..2387825,2387844..2387849) /gene="dps" /locus_tag="AGROH133_08414" /note="ion pore; other site" /db_xref="CDD:153102" gene complement(2387990..2388211) /locus_tag="AGROH133_08415" /db_xref="GeneID:10268172" CDS complement(2387990..2388211) /locus_tag="AGROH133_08415" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279693.1" /db_xref="GI:325293829" /db_xref="GeneID:10268172" /translation="MSYAAFERVGAQLSPQQITDLQNIFDGVCFECLQDRCSHVANEC AAVLIRSAQRGILDHEMLRDIGLAVLRRH" gene 2388585..2388659 /locus_tag="AGROH133_08416" /db_xref="GeneID:10268173" tRNA 2388585..2388659 /locus_tag="AGROH133_08416" /product="tRNA-Gly" /anticodon=(pos:2388617..2388619,aa:Gly) /db_xref="GeneID:10268173" gene 2389063..2391024 /gene="mcpA7" /locus_tag="AGROH133_08417" /db_xref="GeneID:10268174" CDS 2389063..2391024 /gene="mcpA7" /locus_tag="AGROH133_08417" /note="methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004279694.1" /db_xref="GI:325293830" /db_xref="GeneID:10268174" /translation="MRNIPVVGKFLTVFALFGVCAILIAAYSAIQIKSIDGSYSDLIA RDSAAALNLALANQELLNGRAALADMMIAFTEQGNAAAEAEVKATRDKFMVSMDGAIA NIPEDNRVRVLKDDVTTLYNVTCKNAWHLGRTASTVDEALASQKAFGTECQPVFAKIG SKLTQIATDISNRSAKQSDDLSDISQRTALITVAAVVLGFITVVVIGYFAISSWLVTP IRGLVGTMQTLAEGNLSVNVEGTDRRDEVGTMAKAVEVFKDNELKARRLEADAAQVRN QSEAERQRTAEIDRRRAAEMAEATSGLAEGLKHMANGDLSYQLKTPFSAEFESLRADF NIAVNQLSKTLLSVADVTATIDNGSRELSSSASDLSQRTETQAASLEETAAALDQITS NVSNSTKRTEEARIVAVEANRSAQTSGQVVATAVDAMKRIESSSSQISNIIGVIDEIA FQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSAQAAKEIKELIRNSADEVQN GVKLVTATGDALKIIESHVIAINAQLDAIATSAREQSVGLAEVNSAVNQMDQVTQHNA AMVERATASSASLAGDAEKLRQIVGQFKLDGAIASTSTARTAYKPSAPVRVADNAQPR PSPARRMIGQVAAALGVSTASKDQTWGEF" misc_feature <2389528..>2389989 /gene="mcpA7" /locus_tag="AGROH133_08417" /note="TMAO reductase sytem sensor TorS; Region: TMAO_torS; TIGR02956" /db_xref="CDD:163083" misc_feature 2389639..2389842 /gene="mcpA7" /locus_tag="AGROH133_08417" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature 2390173..2390844 /gene="mcpA7" /locus_tag="AGROH133_08417" /note="Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283" /db_xref="CDD:128579" misc_feature 2390263..2390847 /gene="mcpA7" /locus_tag="AGROH133_08417" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(2391167..2392000) /gene="yafB" /locus_tag="AGROH133_08421" /db_xref="GeneID:10268175" CDS complement(2391167..2392000) /gene="yafB" /locus_tag="AGROH133_08421" /EC_number="1.-.-.-" /note="Aldo/keto reductase family; Aldo/keto reductases, related to diketogulonate reductase" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="YP_004279695.1" /db_xref="GI:325293831" /db_xref="GeneID:10268175" /translation="MFDVTANGASIPALGFGTFRIPGPDVLRIVPHALKAGFLHIDTA QIYGNEAEVGEAIAGSGVARSDIFLTTKVWVENYRHDAFLASVDESLKKLKTDYVDLL LLHWPNEAVTLAEQIGALNAVRDAGKVRHIGVSNFNTALMAEAVSLSKAPIVTNQIEY HPYIDQDMVIAAAKAAGMSVTGYYGMADGKVFADPVLKDIAAGRGKSVAQVVLRWLVQ QQGVIALSKTVSEARVDENLAIFDFTLSVAETEAIRALARPDGRIVSPDGLAPVWDAA A" misc_feature complement(2391233..2391982) /gene="yafB" /locus_tag="AGROH133_08421" /note="Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and...; Region: Aldo_ket_red; cd06660" /db_xref="CDD:119408" misc_feature complement(2391227..2391964) /gene="yafB" /locus_tag="AGROH133_08421" /note="Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248" /db_xref="CDD:189468" misc_feature complement(order(2391290..2391295,2391302..2391304, 2391317..2391328,2391374..2391376,2391437..2391454, 2391530..2391532,2391593..2391598,2391683..2391688, 2391785..2391787,2391860..2391862,2391875..2391877, 2391944..2391952)) /gene="yafB" /locus_tag="AGROH133_08421" /note="active site" /db_xref="CDD:119408" misc_feature complement(order(2391686..2391688,2391785..2391787, 2391860..2391862,2391875..2391877)) /gene="yafB" /locus_tag="AGROH133_08421" /note="catalytic tetrad [active]" /db_xref="CDD:119408" gene complement(2392067..2393248) /locus_tag="AGROH133_08422" /db_xref="GeneID:10268176" CDS complement(2392067..2393248) /locus_tag="AGROH133_08422" /note="Major facilitator superfamily; Arabinose efflux permease" /codon_start=1 /transl_table=11 /product="chloramphenicol resistance protein" /protein_id="YP_004279696.1" /db_xref="GI:325293832" /db_xref="GeneID:10268176" /translation="MPLAIFALTIAAYAIGTTEFVIVGLLPTVAADLHITLPLAGLIV SVYALGVTFGAPILTALTGKIERKPLLLGLMALFVVGNVAAAVSPSYETLLVARVLSA FAHGVFFSVGATIAADLVPENRRGSAIAMMFMGLTVAIVTGVPIGTYIGQIFGWRATF WAVAGLGVIAFAGIAALLPGTLKKAPPASLLDQVRVLGSGRLLIVFAMTALGYGGTFV AFTFLAPILQDVTGFSEKSVGLILVLYGIAIAAGNIGGGKIANHNPVKALIGLFLAQA IVLLVFSFTAVSPVLTLITLVALGFLSFANVPGLQLYVVQLAKEHRPGAVDVASALNI AAFNLGIAIGAWLGGLVVESPMGLAATPWVGAILVAIALILTLWSSALDRRASLSLKT A" misc_feature complement(2392154..2393248) /locus_tag="AGROH133_08422" /note="Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814" /db_xref="CDD:32643" misc_feature complement(2392274..2393236) /locus_tag="AGROH133_08422" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(order(2392274..2392276,2392307..2392309, 2392316..2392321,2392331..2392333,2392340..2392345, 2392352..2392354,2392490..2392492,2392502..2392504, 2392511..2392513,2392523..2392525,2392535..2392537, 2392577..2392579,2392586..2392591,2392598..2392603, 2392610..2392612,2392829..2392831,2392847..2392852, 2392859..2392864,2392898..2392900,2392907..2392912, 2392919..2392924,2392931..2392936,2393072..2393077, 2393081..2393086,2393096..2393098,2393105..2393110, 2393117..2393119,2393168..2393173,2393177..2393185, 2393192..2393194)) /locus_tag="AGROH133_08422" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" gene 2393411..2394310 /locus_tag="AGROH133_08435" /db_xref="GeneID:10268177" CDS 2393411..2394310 /locus_tag="AGROH133_08435" /note="LysR, substrate-binding; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004279697.1" /db_xref="GI:325293833" /db_xref="GeneID:10268177" /translation="MDNRAGEMEVFVAAAELGSFSAAGRRLKLSPSAVSKLVTRIEDR LGTRLLARSTRVVTLTPEGEIYLSRARRILADIADTEQIVAGGGKVVPRGLLRVNATL GFGERYLLPLAPEFLSLYPEIELDISLTDGVISLIEERTDIAIRSGGMADSSLKARKL KEVRRIIVASPAYIEKHGMPEKPQDLAQHNCISFNFSRSLNEWPFRDPGTTEVYRLPV TGNASVNSGMAMRRLCLTGLGLGRVGEFHVEPDIEAGLLVPVLEDYNPGDMEVIHAVY AGHDHLAARVRAFIDFVAAKVGR" misc_feature 2393429..2394307 /locus_tag="AGROH133_08435" /note="Transcriptional regulator [Transcription]; Region: LysR; COG0583" /db_xref="CDD:30928" misc_feature 2393432..2393602 /locus_tag="AGROH133_08435" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature 2393690..2394286 /locus_tag="AGROH133_08435" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature order(2393738..2393743,2393747..2393752,2393759..2393761, 2393771..2393773,2393777..2393797,2394071..2394088, 2394104..2394109,2394113..2394118) /locus_tag="AGROH133_08435" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(2394320..2395219) /locus_tag="AGROH133_08437" /db_xref="GeneID:10268178" CDS complement(2394320..2395219) /locus_tag="AGROH133_08437" /note="LysR substrate binding domain; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004279698.1" /db_xref="GI:325293834" /db_xref="GeneID:10268178" /translation="MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHL HTTLLNRTTRRVMLTTDGALYYERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVF ADLVVIPHLCEFYQRYPQIRLDLGVGDRLVDYIAENVDCALRVGTLRDQSLIARKVGE LKFETFASPLYIESFGMPQQPEDLENGHHSVGYFNATTGQIMPISFDNGLRSVEITPN YVVSVNDSRTYLNAALAGMGMVQLPVFMVKDALARGELVPVLPEWRREPMPIYVVYPQ TRHVTNKVRVFVDWLAKMVHSLV" misc_feature complement(2394341..2395219) /locus_tag="AGROH133_08437" /note="LysR family transcriptional regulator; Provisional; Region: PRK14997" /db_xref="CDD:184959" misc_feature complement(<2395088..2395210) /locus_tag="AGROH133_08437" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2394338..2394946) /locus_tag="AGROH133_08437" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472" /db_xref="CDD:176161" misc_feature complement(order(2394410..2394412,2394491..2394493, 2394542..2394544,2394737..2394739,2394743..2394745, 2394785..2394787,2394902..2394904,2394914..2394916)) /locus_tag="AGROH133_08437" /note="putative effector binding pocket; other site" /db_xref="CDD:176161" misc_feature complement(order(2394515..2394517,2394524..2394529, 2394548..2394562,2394653..2394655,2394839..2394859, 2394863..2394865,2394875..2394877,2394884..2394889, 2394893..2394898,2394908..2394913)) /locus_tag="AGROH133_08437" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176161" gene 2395354..2396151 /locus_tag="AGROH133_08439" /db_xref="GeneID:10268179" CDS 2395354..2396151 /locus_tag="AGROH133_08439" /EC_number="3.-.-.-" /note="alpha/beta hydrolase fold; Esterase/lipase" /codon_start=1 /transl_table=11 /product="lipase esterase" /protein_id="YP_004279699.1" /db_xref="GI:325293835" /db_xref="GeneID:10268179" /translation="MKAHWENIEGCGGSASQLSVRRYESAGLCTNPPVVLYLRGGSFL EKGGNCPELPVARALAESGAIVVEADYSKSSGNEFPMVIDCAFEALDHLSRDRKHYGG AKSLLFVAGEEAGGNVAAGLALKARDRMPGKLAGQILLSPMIDPMMTTESFRDADRIG MRQRWADGWSHYLAKACGFFHPYAAPCQCTRLNRVAPALIFTAEDDPLRDETVGYADR LIASGVSVRQHVFPAGIGWTGLYQGKGGGWVPSVCSEFKTFVDQIKH" misc_feature 2395387..2396082 /locus_tag="AGROH133_08439" /note="Esterase/lipase [Lipid metabolism]; Region: Aes; COG0657" /db_xref="CDD:31002" gene 2396268..2397458 /gene="mexE" /locus_tag="AGROH133_08440" /db_xref="GeneID:10268180" CDS 2396268..2397458 /gene="mexE" /locus_tag="AGROH133_08440" /note="Membrane-fusion protein" /codon_start=1 /transl_table=11 /product="HlyD family secretion protein" /protein_id="YP_004279700.1" /db_xref="GI:325293836" /db_xref="GeneID:10268180" /translation="MTLTTKRRALTGAGIGLAMSVAAAALIFDLPTSRDATAASTPAE TPAIPVTVAKVESRDVMRWEEFSGRLEAVDRVQIRSRVAGQIKAVHFREGALVKEGDP LFTIDPAPYQAAVAGAEAQVASAEAKVSLAKTELDRGRRLSDNRTISQSDLDQRQSSF ADAEAQLRAARSTLTTAQLDLGYTEIVAPVSGRVGRIEITAGNLVAAGSTSPALTTLV SVNPIYASFNASEGTVAKALSELPKTTDALPALEQIPVEIGTLSDEGTPIKGTLHLID NQVDSASGTIGVRAVFENPDGRLIPGQFVRVRMGEPKPENRIVISDRAIGTDQDKRFV FVVDAENKVSYRQIKPGAPADGQRIIDSGLAAGDTIVVNGLQRIRPGATIAPQAEDKV AASQ" misc_feature 2396415..2397428 /gene="mexE" /locus_tag="AGROH133_08440" /note="RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730" /db_xref="CDD:162505" misc_feature <2396496..2396585 /gene="mexE" /locus_tag="AGROH133_08440" /note="Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2...; Region: Biotinyl_lipoyl_domains; cl11404" /db_xref="CDD:197439" gene 2397573..2400767 /gene="mexF" /locus_tag="AGROH133_08443" /db_xref="GeneID:10268181" CDS 2397573..2400767 /gene="mexF" /locus_tag="AGROH133_08443" /note="RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Cation/multidrug efflux pump" /codon_start=1 /transl_table=11 /product="AcrB/AcrD/AcrF family" /protein_id="YP_004279701.1" /db_xref="GI:325293837" /db_xref="GeneID:10268181" /translation="MNISRFFVDRPVFAGVLSILIVVAGLLGMRALPISEYPEVVPPS IVVRATYPGANPAVIAETVATPLEEQINGVEDMLYMGSQATSDGVLTLTVTFKLGTDP DKAQQLVQNRVSQAEPRLPAEVRALGITTVKSSPDFIMVVNLVSKTDAYDITYLRNYA TLNVKDRLARIEGVGQVQVFGAGDYSMRVWLDPQKVAEHDLAASDVSDAIRQQNVQAA AGVIGASPSPNGVDLQLNVNAQGRLTTPEEFGNIIVKSGANGQITRLRDVARIELGAA DYTLRSLLDGEPAVAIAVLQAPGSNSIEIADNVRATMDNLQLAMPDGVKYEIVYDTTK FVRSSIEKVVDTLLEAVGLVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYAFGFS INALTLFGLVLAIGIVVDDAIVVVENVERNIENGLSPRDATYKAMREVSGPIIAIALV LVAVFVPLAFISGLSGQFYRQFALTIAISTVISAVNSLTLSPALAALLLKEHDAPKDW LTRFMDRIFGWFFRGFNRAFGAASNGYGKTVGGLVTRKSLVMIVYMALVAATYGMFSA VPSGFVPAQDKQYLIGFAQLPDGATLDRTESVIKRMSDIAMQQPGVSHAIAFPGLSIN GFTIGSNSGIVFAVLDDFENRKTPELSGGAIAMQLNQKFAGIQDAFIAMFPPPPVNGL GQTGGFKLQIEDRAGYGYQTLDEAAKAVIAKAYQTPELAGIFSSFQINVPQLFADLDR AKAEQLGVSVSDVFQTLQIYLGSLYVNDFNAFGRTYSVRVQADAQFRAHAEDIGRLKV RSSTGQMIPLSTLLKVDATTGPERTNRYNGFLAADINGGPAPGFSSGQAQAAIEKILA ENLPAGIEYEWTDLTYQQILAGNSSLVVFPLALLLVYLVLAAQYESLTLPIAIILIVP LGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFARELEFEGRTPLQAAV EASRLRLRPILMTSLAFIMGVVPLVISTGAGAEMRAAMGVAVFSGMIGVTFFGIFMTP VFYVLVRKLSGNRPLIQHKQEEPANSDYKLEKAG" misc_feature 2397579..2400683 /gene="mexF" /locus_tag="AGROH133_08443" /note="AcrB/AcrD/AcrF family; Region: ACR_tran; pfam00873" /db_xref="CDD:144459" gene 2401059..2401259 /locus_tag="AGROH133_08456" /db_xref="GeneID:10268182" CDS 2401059..2401259 /locus_tag="AGROH133_08456" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279702.1" /db_xref="GI:325293838" /db_xref="GeneID:10268182" /translation="MEQEYENWATTIAYSIVMHEGLDLALAAQNLDRGKTRNNRERLM EAIRTSLLEARSRSHLTIAQRL" gene complement(2401292..2402137) /locus_tag="AGROH133_08457" /db_xref="GeneID:10268183" CDS complement(2401292..2402137) /locus_tag="AGROH133_08457" /note="Endonuclease/Exonuclease/phosphatase family; Metal-dependent hydrolase" /codon_start=1 /transl_table=11 /product="endonuclease/exonuclease/phosphatase protein" /protein_id="YP_004279703.1" /db_xref="GI:325293839" /db_xref="GeneID:10268183" /translation="MKKNSLLERGKTALAKNSSLPAFVMQSLRDRHQRKNAGQVERDH SFPVIASYNVHKCVGRDRRFDPDRTSRVIQEIGADIIALQEADSRFGERTGLLDLARL ERESGLVPVPVLAGVKAHGWHGNVLLFKEGAVRDVHTLKLPGLEPRGALVVELDLKSG GALRIIAAHFGLLRHSRAQQAKALIGLLEARNECATILMGDLNEWRLGNGSSLNTLRD AFGALPPAVPSFPSNLPVLALDRIIANREGLIEQVEAHDSALARIASDHLPLKAAIRT DLLPT" misc_feature complement(2401316..2401993) /locus_tag="AGROH133_08457" /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490" /db_xref="CDD:197411" misc_feature complement(order(2401337..2401342,2401418..2401420, 2401529..2401531,2401535..2401537,2401631..2401633, 2401883..2401885,2401979..2401981)) /locus_tag="AGROH133_08457" /note="putative catalytic site [active]" /db_xref="CDD:197306" misc_feature complement(order(2401340..2401342,2401883..2401885)) /locus_tag="AGROH133_08457" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197306" misc_feature complement(order(2401337..2401339,2401529..2401531, 2401631..2401633)) /locus_tag="AGROH133_08457" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197306" gene complement(2402197..2403675) /gene="cls" /locus_tag="AGROH133_08458" /db_xref="GeneID:10268184" CDS complement(2402197..2403675) /gene="cls" /locus_tag="AGROH133_08458" /EC_number="2.7.8.-" /note="Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases and related enzymes" /codon_start=1 /transl_table=11 /product="cardiolipin synthase" /protein_id="YP_004279704.1" /db_xref="GI:325293840" /db_xref="GeneID:10268184" /translation="MPYSCIMLDLVIAYWPHILAALSILMGTVAAVHATMTKEEVRSA LGWVGVIVLSPIVGAVIYAIAGINRIRRSSIRQQRSFMQDEIMDRVARLDASGEVIAA RFGRRFEAMKTLGDRVTRHALTTGNRIEPLVTGDVAYAAMLEAIGEAKRSIILETYIF DNDRIGARFVAALERAKFRGVEVRVLVDAVGARYSVPSILPTLREKGIVADVFNGNVI MGLRLPYANLRTHRKILVVDGRLAFSGGMNIREGFTLEFGGEKQAHDTHFKISGPVVS DFFSIAAEDWRFTTGELLQTPVWDIAIPDGVPGSQIVARVSSSGPDKSIETNHKMLMG AFSVARSSILVMSPYFLPDRELISALITAARRGVVVDIIVPQSNNLVLVDRAMTAQFD QMLKNYCRIWRATGPFNHSKLLVIDERWSYIGSSNLDPRSLRLNFEVDLEVMDEEFAA TIGNRIREARATALPVRLSELNARPFVVRFVERVLWLASPYL" misc_feature complement(2402200..2403642) /gene="cls" /locus_tag="AGROH133_08458" /note="cardiolipin synthetase; Reviewed; Region: cls; PRK01642" /db_xref="CDD:179315" misc_feature complement(2402812..2403279) /gene="cls" /locus_tag="AGROH133_08458" /note="Putative catalytic domain, repeat 1, of uncharacterized proteins similar to bacterial cardiolipin synthase; Region: PLDc_CLS_unchar2_1; cd09157" /db_xref="CDD:197254" misc_feature complement(order(2402881..2402883,2402932..2402934, 2402938..2402940,2402977..2402979,2402983..2402985)) /gene="cls" /locus_tag="AGROH133_08458" /note="putative active site [active]" /db_xref="CDD:197254" misc_feature complement(2402983..2402985) /gene="cls" /locus_tag="AGROH133_08458" /note="catalytic site [active]" /db_xref="CDD:197254" misc_feature complement(2402200..2402724) /gene="cls" /locus_tag="AGROH133_08458" /note="Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase; Region: PLDc_CLS_unchar2_2; cd09163" /db_xref="CDD:197260" misc_feature complement(order(2402362..2402364,2402395..2402397, 2402401..2402403,2402440..2402442,2402446..2402448)) /gene="cls" /locus_tag="AGROH133_08458" /note="putative active site [active]" /db_xref="CDD:197260" misc_feature complement(2402446..2402448) /gene="cls" /locus_tag="AGROH133_08458" /note="catalytic site [active]" /db_xref="CDD:197260" gene 2403889..2404803 /gene="pdxK" /locus_tag="AGROH133_08461" /db_xref="GeneID:10268185" CDS 2403889..2404803 /gene="pdxK" /locus_tag="AGROH133_08461" /EC_number="2.7.1.35" /note="catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; Pyridoxal/pyridoxine/pyridoxamine kinase" /codon_start=1 /transl_table=11 /product="pyridoxine kinase" /protein_id="YP_004279705.1" /db_xref="GI:325293841" /db_xref="GeneID:10268185" /translation="MRASVAFESKKAVMQENTQGAVIVISSHVMRGSVGNRAAVFALE TLGYPVWAVPTIVLPWHPGHGPSTRMRFQDDDFDKAMTDLENAKWIGEVKAVLTGYFG SAAQVRSVARLIRNLKEKNPSLIYACDPVMGDLGGLYIPLETAEAIRDHLIPLATVAT PNRYELAWMSGAELETNNAIMDAALALGPPKMLVTSAVSMMAGGTGNLYLSGRHALMA EHRAIEDAPNGLGDLMAALFLARLLEGMDDEKALQLATASVFEILARTKKRDMNELTL ETDSSSLSTPMAMVQMRHLLHPSRSKRK" misc_feature 2403952..2404692 /gene="pdxK" /locus_tag="AGROH133_08461" /note="Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and...; Region: pyridoxal_pyridoxamine_kinase; cd01173" /db_xref="CDD:29357" misc_feature order(2403967..2403969,2403988..2403993,2404060..2404062, 2404069..2404074,2404087..2404089,2404186..2404188, 2404192..2404194,2404570..2404575,2404582..2404584) /gene="pdxK" /locus_tag="AGROH133_08461" /note="pyridoxal binding site [chemical binding]; other site" /db_xref="CDD:29357" misc_feature order(2403970..2403972,2403976..2403981,2403985..2403987, 2403997..2403999,2404009..2404011,2404018..2404020, 2404033..2404050,2404057..2404059,2404066..2404068, 2404093..2404098,2404102..2404104,2404123..2404128, 2404147..2404149) /gene="pdxK" /locus_tag="AGROH133_08461" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29357" misc_feature order(2404273..2404275,2404288..2404290,2404366..2404368, 2404372..2404374,2404381..2404383,2404471..2404476, 2404501..2404503,2404546..2404548,2404552..2404557, 2404567..2404569,2404576..2404584,2404588..2404590, 2404663..2404665,2404675..2404677) /gene="pdxK" /locus_tag="AGROH133_08461" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29357" gene 2404878..2405519 /gene="cah" /locus_tag="AGROH133_08462" /db_xref="GeneID:10268186" CDS 2404878..2405519 /gene="cah" /locus_tag="AGROH133_08462" /EC_number="4.2.1.1" /codon_start=1 /transl_table=11 /product="Carbonic anhydrase" /protein_id="YP_004279706.1" /db_xref="GI:325293842" /db_xref="GeneID:10268186" /translation="MKDFPENLLNGYKNFMSGRYADERERYRVLADTGQKPQTLFIAC CDSRSAPETIFDCGPGELFVVRNVANMVPPFEPDGQYHATSAAIEYAVQVLKVKDIVV MGHGRCGGIQAALDPNLEPLSPGDFIGKWMNMVKSAAEQIQSNDVMTASERQTALERV SIRNSIANLRGFPFVKAQETAGKVKLHGAWFDISTGELWVMDGKTGDFRRPDL" misc_feature 2404908..2405480 /gene="cah" /locus_tag="AGROH133_08462" /note="Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeB; cd00884" /db_xref="CDD:48223" misc_feature order(2404980..2404982,2404986..2404988,2405007..2405009, 2405013..2405021,2405055..2405057,2405064..2405066, 2405145..2405147,2405160..2405162,2405190..2405192, 2405199..2405201,2405448..2405450) /gene="cah" /locus_tag="AGROH133_08462" /note="active site clefts [active]" /db_xref="CDD:48223" misc_feature order(2405007..2405009,2405013..2405015,2405190..2405192, 2405199..2405201) /gene="cah" /locus_tag="AGROH133_08462" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:48223" misc_feature order(2405010..2405021,2405025..2405027,2405031..2405042, 2405055..2405063,2405067..2405069,2405073..2405075, 2405130..2405135,2405142..2405147,2405268..2405270, 2405448..2405450,2405454..2405459,2405463..2405465, 2405469..2405471) /gene="cah" /locus_tag="AGROH133_08462" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48223" gene complement(2405688..2406467) /locus_tag="AGROH133_08463" /db_xref="GeneID:10268187" CDS complement(2405688..2406467) /locus_tag="AGROH133_08463" /note="Membrane-bound lytic murein transglycosylase B" /codon_start=1 /transl_table=11 /product="lytic murein transglycosylase" /protein_id="YP_004279707.1" /db_xref="GI:325293843" /db_xref="GeneID:10268187" /translation="MVSVLAATPVVAAQCGNTSAGFDAWVGAFKQEAASRGVSASVLD RAFSGVSYNQPTIRADRGQHSFKLSFDQFMQKRGGQTIISRGKTMKKNNAALFASIEK AYGVPAGPLLAIWGMETGFGGFMGNQHTLSAVATLSFDCRRSDYFTEQLYAALKLVGS GSLNVNAKGAAHGEIGQTQFLPLNVVRYGVDFDRDGRIDLVGSRADALASTANFLVGH GWQRGAGYQQGQTNYAAIQGWNAASVYQQAIAFIGKAIDGQ" misc_feature complement(2405703..2406467) /locus_tag="AGROH133_08463" /note="lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases...; Region: lysozyme_like; cl00222" /db_xref="CDD:193718" gene complement(2406719..2407753) /gene="asd" /locus_tag="AGROH133_08464" /db_xref="GeneID:10268188" CDS complement(2406719..2407753) /gene="asd" /locus_tag="AGROH133_08464" /EC_number="1.2.1.11" /note="catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde" /codon_start=1 /transl_table=11 /product="Aspartate-semialdehyde dehydrogenase" /protein_id="YP_004279708.1" /db_xref="GI:325293844" /db_xref="GeneID:10268188" /translation="MGFKVAIVGATGNVGREMLNILAERGFPADEVVPLASSRSQGTE VSYGDRTLKVSNLENYDFSDTDICLMSAGGEISKKWSPKIGQQGCVVIDNSSAWRYDQ DVPLIVPEVNADAISGFTRKNIIANPNCSTAQLVVALKPLHDFAKIKRVVVSTYQSVS GAGKEGMDELFQQTRAVFVADPVETKKFTKRIAFNVIPHIDVFMEDGYTKEEWKVLAE TKKMLDPKIKVTCTAVRVPVFIGHSESVNIEFENEITADQARDILREAPGCLVIDKHE DGGYITPVESAGEDATYISRIREDATVENGLNIWVVSDNLRKGAALNAIQIAELLVNR GLIKPRKAAA" misc_feature complement(2406758..2407750) /gene="asd" /locus_tag="AGROH133_08464" /note="aspartate-semialdehyde dehydrogenase; Provisional; Region: PRK14874" /db_xref="CDD:184874" misc_feature complement(2407400..2407744) /gene="asd" /locus_tag="AGROH133_08464" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931" /db_xref="CDD:195929" misc_feature complement(2406800..2407339) /gene="asd" /locus_tag="AGROH133_08464" /note="Semialdehyde dehydrogenase, dimerisation domain; Region: Semialdhyde_dhC; pfam02774" /db_xref="CDD:145758" gene 2408262..2410145 /gene="mtbA" /locus_tag="AGROH133_08465" /db_xref="GeneID:10268189" CDS 2408262..2410145 /gene="mtbA" /locus_tag="AGROH133_08465" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="sugar MFS permease" /protein_id="YP_004279709.1" /db_xref="GI:325293845" /db_xref="GeneID:10268189" /translation="MANVAAVSGAARPMTGEEKKVIFASSLGTVFEWYDFYLYGSLAI YIGANFFSQYPETTRNIFALLAFAAGFLVRPFGALVFGRLGDIVGRKYTFLITILIMG VSTFLVGVLPGASQIGIAAPIILIILRMLQGLALGGEYGGAATYVAEHAPNGRRGYYT SWIQTTATLGLFLSLMVILGVQFALGKEAFAAWGWRIPFLVSVLLLGVSVWIRLKMNE SPAFKKMKEEGKTSKAPLSEAFGQWKNAKIALLALVGAVIGQAVVWYTGQFYALFFLQ SILKVDGQSANIMVAAALILGTGFFVLFGWLSDKIGRKPIIMAGLVLAMLTYFPLFKA LTWAGNPALAQAQASVRATVTAAPGDCKFQFNPTGTAKFTTSCDIATSFLTRNSVPYD VVAGAAGTPASVKIGDATIASYDAIAAGADAAAKDRAFQKQVNIALHDGGYPLVRGVA QVPDAKLDAFIAANPELNLNAEAVRAADKKMVATDKLVADKLLTPAETAGAAEMAVYS IAGGGTFAMVADPAAVNWVVIIAVLTVLVIYVTMVYGPIAALLVELFPTRIRYSGMSL PYHIGNGWFGGLLPATAFAMSAAKGDIYYGLWYPIVFAGITLVIGLLFLPETKDRDIH TME" misc_feature 2408325..>2409293 /gene="mtbA" /locus_tag="AGROH133_08465" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature order(2408367..2408369,2408376..2408384,2408388..2408393, 2408460..2408462,2408469..2408474,2408481..2408483, 2408493..2408498,2408502..2408507,2408667..2408672, 2408679..2408684,2408691..2408696,2408703..2408705, 2408739..2408744,2408751..2408756,2408772..2408774, 2409042..2409044,2409051..2409056,2409063..2409068, 2409075..2409077,2409117..2409119,2409129..2409131, 2409141..2409143,2409150..2409152,2409162..2409164) /gene="mtbA" /locus_tag="AGROH133_08465" /note="putative substrate translocation pore; other site" /db_xref="CDD:119392" misc_feature <2409885..2410085 /gene="mtbA" /locus_tag="AGROH133_08465" /note="metabolite-proton symporter; Region: 2A0106; TIGR00883" /db_xref="CDD:188094" gene 2410334..2411908 /gene="pntA" /locus_tag="AGROH133_08478" /db_xref="GeneID:10268190" CDS 2410334..2411908 /gene="pntA" /locus_tag="AGROH133_08478" /EC_number="1.6.1.2" /note="forms a tetramer composed of 2 subunit alphas and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD/NADP transhydrogenase subunit alpha" /codon_start=1 /transl_table=11 /product="NAD/NADP transhydrogenase, subunit alpha" /protein_id="YP_004279710.1" /db_xref="GI:325293846" /db_xref="GeneID:10268190" /translation="MKIGTPKELYDGEARVGMTPDSAQGLQKLGYDCILETGAGKAAG FSDDAYRAAGVTIVDSADALYKGADIIAKVRPPETSEIDRLSSDKTLISFFYPAQNKD LLEQAKEKGANVIAMDMVPRISRAQKMDALSSMANIAGYRAVIEAGNNFGRFFTGQVT AAGKVPPAKVLVIGAGVAGLAAIGTATSLGAITYAFDVRPEVAEQIESMGAEFVYLDF ADQSQDGAATGGYAAPSSPEFREKQLEKFRELAPQIDIVITTALIPGRDAPKLWLADM VAAMKPGSVIIDLAAERGGNCDLTVPDQRVVSDNGVIVIGYTDFPSRMATQASTLYST NIRHMMTDLTPAKDGKVVHNMEDDVIRGATVTYQGDITFPPPPPKIQAIAAQKPKERA KELTPEEKHAKERAEFKAQTKSQVGLLVIGTAALLLVGLYAPASFMSHFIVFVLACFI GFSVIWNVSHSLHTPLMAVTNAISGIVIIGALLQIGSGNWLVVILASLSVLIATINIV GGFLVTRRMLAMFQKS" misc_feature 2410334..2411902 /gene="pntA" /locus_tag="AGROH133_08478" /note="NAD(P) transhydrogenase subunit alpha; Provisional; Region: pntA; PRK09424" /db_xref="CDD:181844" misc_feature 2410343..2410750 /gene="pntA" /locus_tag="AGROH133_08478" /note="Alanine dehydrogenase/PNT, N-terminal domain; Region: AlaDh_PNT_N; pfam05222" /db_xref="CDD:191234" misc_feature 2411645..2411902 /gene="pntA" /locus_tag="AGROH133_08478" /note="Domain of unknown function (DUF3814); Region: DUF3814; pfam12769" /db_xref="CDD:193245" gene 2411928..2413361 /gene="pntB" /locus_tag="AGROH133_08484" /db_xref="GeneID:10268191" CDS 2411928..2413361 /gene="pntB" /locus_tag="AGROH133_08484" /EC_number="1.6.1.2" /note="NAD(P)+ transhydrogenase beta chain; NAD/NADP transhydrogenase beta subunit" /codon_start=1 /transl_table=11 /product="NAD/NADP transhydrogenase subunit beta" /protein_id="YP_004279711.1" /db_xref="GI:325293847" /db_xref="GeneID:10268191" /translation="MTIGIVSAAYVAAAVLFILSLGGLSGQESAKRAVWYGITGMGLA IVATVFGPDVGNWFIVLLMLAGGAVLGYFVANRVQMTEMPQLVAALHSFVGLAAVFIG FNAHIEEAHVASLDETARSLLTGFSALLAHKTPVELAIMKVEVFLGVFIGAVTFTGSV VAFGKLAGKVDGKAKKLPGGHVLNAGAAILSLVLLIMYCNGAGAWTLVLMTLAAFFIG YHLIMGIGGADMPVVVSMLNSYSGWAAAAIGFTLGNDLLIVTGALVGSSGAILSYIMC KAMNRSFISVILGGFGGTTGPAMEIEGEQVAIDAEGVASALNDADSVIIVPGYGMAVA QAQQAVSELTRKLRADGKTVRFAIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDD FPNTDVVIVIGSNDIVNPAAQDDPNSPIAGMPVLEVWKSKLVIVSKRGQGTGYSGIEN PLFYKDNTRMFYGDAKKSINDLLPLIK" misc_feature 2411928..2413346 /gene="pntB" /locus_tag="AGROH133_08484" /note="NAD(P) transhydrogenase beta subunit; Region: PNTB; cl00566" /db_xref="CDD:186084" gene complement(2413537..2414061) /locus_tag="AGROH133_08494" /db_xref="GeneID:10268192" CDS complement(2413537..2414061) /locus_tag="AGROH133_08494" /EC_number="1.14.13.3" /note="4-hydroxyphenylacetate 3-monooxygenase, reductase component; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate-3-hydroxylase small chain" /protein_id="YP_004279712.1" /db_xref="GI:325293848" /db_xref="GeneID:10268192" /translation="MRMMSLEKEAEMETKTAQERSLDYRNAMARLGAAVNIVTTDGAA GRAGFAATAVCSVSDNPPTLLVCLNRGSSAYNVVKGNGVICVNTLASKHEVLSTLFGG KTPAEERFAAGSWGVLETGAPVLEDALVSFDCRIREAHDGGTHDILICDVVDMKINEG DEALMYFNRRYRVL" misc_feature complement(2413540..2414004) /locus_tag="AGROH133_08494" /note="Flavin Reductases; Region: FlaRed; cl00801" /db_xref="CDD:193940" gene complement(2414088..2414678) /locus_tag="AGROH133_08495" /db_xref="GeneID:10268193" CDS complement(2414088..2414678) /locus_tag="AGROH133_08495" /note="Nitroreductase family; Nitroreductase" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279713.1" /db_xref="GI:325293849" /db_xref="GeneID:10268193" /translation="MTRALDDAALATLFTEARTHNGWTDKPIGDDTLTALYDLTKMGP TSANCSPARFVFVRSPEAREKLRPALSSGNLEKTMAAPVTVIAAIDSEFYEKLPVLFP HADARSWFTSSAAMAEETAFRNATLQAGYLILAARALGLDTGAMSGFDKGKVDAAFFA GTTWKSNFLINLGYGDPSKLFGRLPRLAFEDACVLA" misc_feature complement(2414100..2414645) /locus_tag="AGROH133_08495" /note="Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and...; Region: Nitroreductase_5; cd02148" /db_xref="CDD:48393" misc_feature complement(order(2414235..2414240,2414538..2414540, 2414616..2414618,2414622..2414624,2414628..2414630)) /locus_tag="AGROH133_08495" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:48393" gene complement(2414696..2415487) /locus_tag="AGROH133_08496" /db_xref="GeneID:10268194" CDS complement(2414696..2415487) /locus_tag="AGROH133_08496" /note="Alpha/beta hydrolase fold-1; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="YP_004279714.1" /db_xref="GI:325293850" /db_xref="GeneID:10268194" /translation="MMHFEVHGRAEPEAPTILLSSGLGGSGAYWAPQIEALSSHFRIV TYDHRGTGRTGGEVPADGGISAMADDVLEIVSALNLEKFHFMGHALGGLIGLDIALRK PGLIERLVLINAWSKADPHSGRCFDVRIELLEKSGVEAFVKAQPLFLYPAAWMSEHQE RLARDDAHGVAHFQGRANVLRRIAALRAFDVDARLGEIGNPVLVVATKDDLLVPYTRS LRLAEGLPQSELCLLDFGAHAVNITDSDLFNARLLQFLLPATQTF" misc_feature complement(2414720..2415484) /locus_tag="AGROH133_08496" /note="pyrimidine utilization protein D; Region: RutD; TIGR03611" /db_xref="CDD:188354" gene complement(2415502..2415888) /locus_tag="AGROH133_08497" /db_xref="GeneID:10268195" CDS complement(2415502..2415888) /locus_tag="AGROH133_08497" /note="Endoribonuclease L-PSP/chorismate mutase-like; Putative translation initiation inhibitor, yjgF family" /codon_start=1 /transl_table=11 /product="endoribonuclease L-PSP" /protein_id="YP_004279715.1" /db_xref="GI:325293851" /db_xref="GeneID:10268195" /translation="MPKKIVVPAGTSKPIAPFSPGTLADGVVYVSGTLPFDKDNNVVH VGDASAQTRHVLETIKSVIETAGGTMEDVTMNHIFITDWANYQAVNTVYAEYFPGDKP ARYCIQCGLVKPDALVEIATVAHIGK" misc_feature complement(2415517..2415837) /locus_tag="AGROH133_08497" /note="YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448" /db_xref="CDD:100004" misc_feature complement(order(2415520..2415522,2415526..2415528, 2415532..2415534,2415562..2415585,2415610..2415612, 2415619..2415621,2415652..2415654,2415658..2415660, 2415664..2415669,2415673..2415675,2415793..2415798, 2415802..2415804,2415808..2415810,2415817..2415819, 2415823..2415825,2415832..2415837)) /locus_tag="AGROH133_08497" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100004" misc_feature complement(order(2415532..2415534,2415577..2415579, 2415619..2415621,2415631..2415633,2415835..2415837)) /locus_tag="AGROH133_08497" /note="putative active site [active]" /db_xref="CDD:100004" gene complement(2415915..2416655) /gene="rutB" /locus_tag="AGROH133_08498" /db_xref="GeneID:10268196" CDS complement(2415915..2416655) /gene="rutB" /locus_tag="AGROH133_08498" /EC_number="3.-.-.-" /note="Isochorismatase family; Amidases related to nicotinamidase" /codon_start=1 /transl_table=11 /product="isochorismatase family protein rutB" /protein_id="YP_004279716.1" /db_xref="GI:325293852" /db_xref="GeneID:10268196" /translation="MSEAVVAGYKGPESRSESVTLPARPEPITLKPSETAVVVVDMQN AYSTEGGYVDLAGFDISGAKGTIANIKKTLDAARAAGVQVIYFQNGWDKDYVEAGGPG SPNWHKSNALKTMRKRPELQGQLLAKGTWDYAIVDELQPQPGDILVPKTRYSGFFNTN MDSVLRARGIRNLVFVGIATNVCVESSLRDAFHLEYFGVMLEDATHHLGPDYIQQATV YNVEKFFGWVATVNDFCGVISQAAPVRD" misc_feature complement(2415960..2416553) /gene="rutB" /locus_tag="AGROH133_08498" /note="Isochorismatase family; Region: Isochorismatase; pfam00857" /db_xref="CDD:189743" misc_feature complement(2416008..2416550) /gene="rutB" /locus_tag="AGROH133_08498" /note="Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cd00431" /db_xref="CDD:29548" misc_feature complement(order(2416107..2416109,2416206..2416208, 2416533..2416535)) /gene="rutB" /locus_tag="AGROH133_08498" /note="catalytic triad [active]" /db_xref="CDD:29548" misc_feature complement(2416119..2416124) /gene="rutB" /locus_tag="AGROH133_08498" /note="conserved cis-peptide bond; other site" /db_xref="CDD:29548" gene complement(2416652..2417743) /gene="rutA" /locus_tag="AGROH133_08499" /db_xref="GeneID:10268197" CDS complement(2416652..2417743) /gene="rutA" /locus_tag="AGROH133_08499" /EC_number="1.14.-.-" /note="Bacterial luciferase-like; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin- dependent oxidoreductases" /codon_start=1 /transl_table=11 /product="pyrimidine utilization protein A" /protein_id="YP_004279717.1" /db_xref="GI:325293853" /db_xref="GeneID:10268197" /translation="MEVGVFIPIGNNGWLLSENAPQYKPSFDLNKEITLKAEKYGFDF ALSMIKLRGFGGKTEFWDYNLESFTLMAGLAAVTSKIKLFGTAATLVMPPAIVARMAT TIDSISGGRFGINLITGWQRPEYSQMGLWPGDDYFGDRYEYLGEYTSVLKELLTEGQS DFKGKFFQMDDCRMKPVPQGDVKLICAGSSNSGMAFSAKFADYSFCFGVGVNTPKAFA PTNERLLAATEKSGREVKSVVLTMILAEEKSKDAWAKWEHYKAGADEDAIKWLGLQSS VDTKSGSDTNVRHMSNPVSAVNINMGTLIGSYEEVAAMLDEMSEVPGTGGVMLTFDDF LEGVEKFGKYVQPLMKSRQHVLAELEAAE" misc_feature complement(2416679..2417743) /gene="rutA" /locus_tag="AGROH133_08499" /note="pyrimidine utilization protein A; Region: RutA; TIGR03612" /db_xref="CDD:163355" misc_feature complement(2416970..2417743) /gene="rutA" /locus_tag="AGROH133_08499" /note="Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin...; Region: Alkanesulfonate_monoxygenase; cd01094" /db_xref="CDD:29426" misc_feature complement(order(2417018..2417020,2417024..2417026, 2417129..2417131,2417171..2417176,2417324..2417326, 2417393..2417395,2417552..2417554,2417714..2417716, 2417726..2417728)) /gene="rutA" /locus_tag="AGROH133_08499" /note="active site" /db_xref="CDD:29426" misc_feature complement(order(2417222..2417227,2417231..2417239, 2417240..2417242,2417363..2417368,2417375..2417377, 2417426..2417428,2417435..2417437,2417444..2417449, 2417456..2417461,2417465..2417467,2417516..2417518, 2417525..2417530,2417537..2417539,2417546..2417563)) /gene="rutA" /locus_tag="AGROH133_08499" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:29426" misc_feature complement(2417483..2417488) /gene="rutA" /locus_tag="AGROH133_08499" /note="non-prolyl cis peptide bond; other site" /db_xref="CDD:29426" misc_feature complement(order(2416970..2416987,2417006..2417017, 2417207..2417239,2417240..2417242,2417327..2417329, 2417339..2417344,2417363..2417389)) /gene="rutA" /locus_tag="AGROH133_08499" /note="insertion regions; other site" /db_xref="CDD:29426" gene complement(2418208..2418819) /gene="hemO" /locus_tag="AGROH133_08500" /db_xref="GeneID:10268198" CDS complement(2418208..2418819) /gene="hemO" /locus_tag="AGROH133_08500" /note="Haem oxygenase" /codon_start=1 /transl_table=11 /product="Heme oxygenase" /protein_id="YP_004279718.1" /db_xref="GI:325293854" /db_xref="GeneID:10268198" /translation="MTIVEPSAPVEEIEQSRVKRLRAATRGAHGGLDTFIMAAKPFES RENFGKFVETQYLFHRDLDAFFSNETLDGLLPDLKGRRRLSMIEQDLADLGHAIPETN EPRFTSETPFDLPEAMGWLYVVEGSNLGAAFLLKDAAKLGLTEEFGARHLAGAPEGRG LHWRTFTAALDEISLTIEEEERVVAGAEAAFRAVHAYAQQRLG" misc_feature complement(2418292..2418774) /gene="hemO" /locus_tag="AGROH133_08500" /note="Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This...; Region: HemeO; cd00232" /db_xref="CDD:29310" misc_feature complement(order(2418331..2418333,2418418..2418420, 2418430..2418432,2418454..2418456,2418733..2418735, 2418745..2418747,2418754..2418756)) /gene="hemO" /locus_tag="AGROH133_08500" /note="heme binding pocket [chemical binding]; other site" /db_xref="CDD:29310" misc_feature complement(2418733..2418735) /gene="hemO" /locus_tag="AGROH133_08500" /note="heme ligand [chemical binding]; other site" /db_xref="CDD:29310" gene 2419100..2419984 /gene="dapA" /locus_tag="AGROH133_08501" /db_xref="GeneID:10268199" CDS 2419100..2419984 /gene="dapA" /locus_tag="AGROH133_08501" /EC_number="4.2.1.52" /note="Dihydrodipicolinate synthetase family; Dihydrodipicolinate synthase/N- acetylneuraminate lyase" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="YP_004279719.1" /db_xref="GI:325293855" /db_xref="GeneID:10268199" /translation="MTQKFGLSAALTTPFKTDGTVDTDAMIAHARRCLANGCDSVTLF GTTGEGCSVGSRERQVILSRFIEAGIAPSRLVTGVLVDSIEDAADQSAEALNAGARNI LLAPPSYFKNVSDDGLFAWFSAVFEKIGKGARDILVYNIPSVTMVTLSVELVGRLRQA FPGIVTGVKDSSGNWSHTERLLKEHGDLAILIGDERDLAKGVRLGGQGAISGVANFLT QEVRAMAVDGKDDARIVDLVVELLKFPVTPAVKVLVSHTTGENIWSDVRAPLVAISPE GRRQIEGAFDALFRKQAA" misc_feature 2419100..2419981 /gene="dapA" /locus_tag="AGROH133_08501" /note="Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329" /db_xref="CDD:30677" misc_feature 2419118..2419954 /gene="dapA" /locus_tag="AGROH133_08501" /note="Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408" /db_xref="CDD:188630" misc_feature order(2419127..2419129,2419223..2419225,2419232..2419240, 2419514..2419516,2419604..2419606) /gene="dapA" /locus_tag="AGROH133_08501" /note="inhibitor site; inhibition site" /db_xref="CDD:188630" misc_feature order(2419223..2419225,2419232..2419240,2419514..2419516, 2419604..2419606,2419727..2419729) /gene="dapA" /locus_tag="AGROH133_08501" /note="active site" /db_xref="CDD:188630" misc_feature order(2419235..2419237,2419250..2419255,2419346..2419351, 2419421..2419426,2419448..2419450,2419460..2419462, 2419901..2419906) /gene="dapA" /locus_tag="AGROH133_08501" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188630" misc_feature 2419604..2419606 /gene="dapA" /locus_tag="AGROH133_08501" /note="catalytic residue [active]" /db_xref="CDD:188630" gene 2420006..2420662 /locus_tag="AGROH133_08502" /db_xref="GeneID:10268200" CDS 2420006..2420662 /locus_tag="AGROH133_08502" /note="GntR, C-terminal; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="YP_004279720.1" /db_xref="GI:325293856" /db_xref="GeneID:10268200" /translation="MDDTGEQTLRERAYESFTHHLLSRDVRPGQFISQRRLVELTGLP LGAIREAIPRLEAEGLIKTVPQRGLQVAHIDINLIREAFQFRIFLEKEAVALFTRSAS DETIAKLLKQHRDIVEATENGGESPELDQHAQQVDWGMHDAFIDSLGNSIISNAYRVN SIKMRLINQERFRIAGHVKSVMKEHLAILEAIEKRSVEDAVERLTAHIRNARDRALAV " misc_feature 2420006..2420656 /locus_tag="AGROH133_08502" /note="Transcriptional regulators [Transcription]; Region: GntR; COG1802" /db_xref="CDD:31987" misc_feature 2420027..2420221 /locus_tag="AGROH133_08502" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377" /db_xref="CDD:153418" misc_feature order(2420027..2420029,2420033..2420035,2420105..2420110, 2420132..2420146,2420150..2420155,2420162..2420164, 2420192..2420197,2420201..2420212) /locus_tag="AGROH133_08502" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:153418" misc_feature 2420246..2420635 /locus_tag="AGROH133_08502" /note="FCD domain; Region: FCD; cl11656" /db_xref="CDD:196275" gene 2420767..2422098 /locus_tag="AGROH133_08503" /db_xref="GeneID:10268201" CDS 2420767..2422098 /locus_tag="AGROH133_08503" /note="Bacterial extracellular solute-binding protein, family 1; ABC-type sugar transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="sugar ABC transporter substrate-binding protein" /protein_id="YP_004279721.1" /db_xref="GI:325293857" /db_xref="GeneID:10268201" /translation="MTHSLLNPTRRAFLAGTAAIGGSAVLGIRPASAAVNWKKHAGTT LEVNLVKSPRSETLIKYLGEFEELTGIKVNAEATPEQQQRQKVVIELSSGKPSFDVVH LSYHVQKRQFEKGKWLADISGFLKDPSLTDPSLVEKDFAEAGMLFAKDSDGVLRSLPF SVDYWIVYWNKELFEAKGLKYPETFEELVTAAEKITDPATNTYGFVARGLKNANTPVW TSLMLGYGAKPIGADGKVDTESKEAVEAAKLYQRLMTKAAPPGVSGFNWAEAQSAFLQ GKIGMWFDGVGFAPPIENPEKSRVVGKVGYGVMPKGPAVQAAGTFGDGLGVVEASSKK EAAYLFCQWAISHDMGARLLQAGAGVPFRQSILEDQKVREGVKMPAAWLDAVVGSGKV SQLALPVIIPVTEFRDIYGVGLTNMIGGADPATELKKATEQFAPVLARSEG" misc_feature 2420794..2422086 /locus_tag="AGROH133_08503" /note="ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653" /db_xref="CDD:31839" misc_feature 2420923..2421819 /locus_tag="AGROH133_08503" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2422098..2423036 /locus_tag="AGROH133_08505" /db_xref="GeneID:10268202" CDS 2422098..2423036 /locus_tag="AGROH133_08505" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type sugar transport systems, permease components" /codon_start=1 /transl_table=11 /product="sugar ABC transporter transmembrane protein" /protein_id="YP_004279722.1" /db_xref="GI:325293858" /db_xref="GeneID:10268202" /translation="MASVSIENTKTGASRKERSRPARLAPNYWPFVIPALVVISAVIV FPWVFTLWMSVHRWTLGQEQSFIGFDNYIRLASDVRFWESLWHTLIYTVLSVVAPLFL GTLAALVFDAQFPLRGFLRGVFVMPMMATPVAIALVWTMMFHPQLGVLNYLLSFIHIG PLEWIYNQSTVIPSLVLVETWQWTPLVMLIVLGGLAAVPREPYESAEIDGANAWQKFR YLTMPMIAPFLMIAVIIRSIDAVKSFDIIYAMTQGGPGTASETINIYLYNTAFSYYDI GYGSAMAVVFFIIIVALSFVLLMVRQRAQWNEMEDR" misc_feature 2422200..2423003 /locus_tag="AGROH133_08505" /note="ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395" /db_xref="CDD:30744" misc_feature 2422350..2422970 /locus_tag="AGROH133_08505" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(2422398..2422403,2422410..2422415,2422428..2422430, 2422455..2422466,2422470..2422499,2422506..2422511, 2422515..2422517,2422635..2422640,2422647..2422649, 2422653..2422655,2422662..2422667,2422671..2422673, 2422683..2422688,2422695..2422697,2422746..2422748, 2422788..2422793,2422800..2422802,2422821..2422832, 2422839..2422844,2422887..2422892,2422920..2422925, 2422932..2422937,2422941..2422946,2422953..2422958, 2422965..2422970) /locus_tag="AGROH133_08505" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(2422473..2422517,2422821..2422838) /locus_tag="AGROH133_08505" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(2422515..2422517,2422620..2422622,2422839..2422841, 2422881..2422883,2422890..2422892,2422920..2422922) /locus_tag="AGROH133_08505" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(2422698..2422736,2422752..2422757,2422767..2422769) /locus_tag="AGROH133_08505" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 2423036..2423872 /locus_tag="AGROH133_08512" /db_xref="GeneID:10268203" CDS 2423036..2423872 /locus_tag="AGROH133_08512" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type sugar transport system, permease component" /codon_start=1 /transl_table=11 /product="sugar ABC transporter transmembrane protein" /protein_id="YP_004279723.1" /db_xref="GI:325293859" /db_xref="GeneID:10268203" /translation="MARQLLKRKNLDRIGLFFVALVMISPVILFFIWMISLSLKYEID NGAYPPILIPERFAWSNYVKVFEENNFFLYFWNSVLVTGAATILALVIGVPAGYGIAR LKAEKSAVVIMIARMTPGLSFLIPLFLLFQWLNLLGTLWPQIIIHLVVTVPIVVWIMI GYFETTPKELEEAASIDGASSWQVFRLVALPIAKPGIVVSFILAVIFSWNNFVFGIVL ASRETRTLPVAVYNMLSFEQVSWGPLAAAALIVTLPVLLLTMFAQKQIVAGLTAGAVK GG" misc_feature 2423036..2423863 /locus_tag="AGROH133_08512" /note="ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395" /db_xref="CDD:30744" misc_feature 2423258..2423794 /locus_tag="AGROH133_08512" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature order(2423306..2423311,2423318..2423323,2423336..2423338, 2423357..2423368,2423372..2423392,2423396..2423401, 2423405..2423407,2423480..2423485,2423489..2423491, 2423495..2423497,2423504..2423509,2423513..2423515, 2423525..2423530,2423537..2423539,2423588..2423590, 2423630..2423635,2423642..2423644,2423663..2423674, 2423681..2423686,2423723..2423728,2423756..2423761, 2423768..2423773,2423777..2423782,2423789..2423794) /locus_tag="AGROH133_08512" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(2423375..2423392,2423393..2423407,2423663..2423680) /locus_tag="AGROH133_08512" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature order(2423405..2423407,2423465..2423467,2423681..2423683, 2423717..2423719,2423726..2423728,2423756..2423758) /locus_tag="AGROH133_08512" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature order(2423540..2423578,2423594..2423599,2423609..2423611) /locus_tag="AGROH133_08512" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene 2423905..2424963 /locus_tag="AGROH133_08519" /db_xref="GeneID:10268204" CDS 2423905..2424963 /locus_tag="AGROH133_08519" /EC_number="3.6.3.20" /note="ABC transporter nucleotide-binding protein/ATPase (sugar); ABC-type sugar transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="sugar ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279724.1" /db_xref="GI:325293860" /db_xref="GeneID:10268204" /translation="MAPVNILNVQKRFGAVNIIHGIDIDIKDGEFVVLVGPSGCGKST LLRMIAGLEEVSDGEIHIGAREVSNLPARDRDIAMVFQNYALYPHMTVKDNMGFALKL KKVSADETKAKVDKAAAILGLDKLLDRYPRQLSGGQRQRVAMGRALVRDPQVFLFDEP LSNLDAKLRVQMRGEIKAMHQRIGTTTIYVTHDQVEAMTMADKIVVLHDGVIEQIGAP LELYDRPANLFVAGFIGSPAMNFIRGRVEEGVFRTVKGLSLPLPANSDIAALGGRDLV YGVRPEHIRAASGGIEGRVELVEGTGSEIYAKLNCKGDEIACLFRERLDVRFGDTIHI AIDPEMVHLFDKATGKRI" misc_feature 2423905..2424960 /locus_tag="AGROH133_08519" /note="glycerol-3-phosphate transporter ATP-binding subunit; Provisional; Region: ugpC; PRK11650" /db_xref="CDD:183258" misc_feature 2423914..2424552 /locus_tag="AGROH133_08519" /note="The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two...; Region: ABC_MalK_N; cd03301" /db_xref="CDD:73060" misc_feature 2424010..2424033 /locus_tag="AGROH133_08519" /note="Walker A/P-loop; other site" /db_xref="CDD:73060" misc_feature order(2424019..2424024,2424028..2424036,2424148..2424150, 2424376..2424381,2424478..2424480) /locus_tag="AGROH133_08519" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73060" misc_feature 2424139..2424150 /locus_tag="AGROH133_08519" /note="Q-loop/lid; other site" /db_xref="CDD:73060" misc_feature 2424304..2424333 /locus_tag="AGROH133_08519" /note="ABC transporter signature motif; other site" /db_xref="CDD:73060" misc_feature 2424364..2424381 /locus_tag="AGROH133_08519" /note="Walker B; other site" /db_xref="CDD:73060" misc_feature 2424388..2424399 /locus_tag="AGROH133_08519" /note="D-loop; other site" /db_xref="CDD:73060" misc_feature 2424466..2424486 /locus_tag="AGROH133_08519" /note="H-loop/switch region; other site" /db_xref="CDD:73060" misc_feature 2424736..2424936 /locus_tag="AGROH133_08519" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene 2425013..2425975 /locus_tag="AGROH133_08520" /db_xref="GeneID:10268205" CDS 2425013..2425975 /locus_tag="AGROH133_08520" /note="Carbohydrate/purine kinase; Sugar kinases, ribokinase family" /codon_start=1 /transl_table=11 /product="sugar kinase" /protein_id="YP_004279725.1" /db_xref="GI:325293861" /db_xref="GeneID:10268205" /translation="MDSQHESRKHVLCVGAAVLDTLFRVHDMPKGEGKVLPYEMLQIA EGMASSAAYAVHRMGGRASLWGAVGDDETGTRILRDLAESGIDTTGMTVAAGARSALS TIIIDDRGERLIVPFYDHRLHEKKRSCTPADLAAYDAVLVDVRWPELALDVLDVARAL GKHAILDGDVAPVETLEKLAPAATHIVFSEPAAARLTGLETVEDMLPVLHARYPQTFI AVTAGPAGCWWTEAGDPTVHFQETMQVKAVDTLAAGDIFHGTFALAIAEGMESRAAIR LSSVAAALKCTVFGGRIGAPTREETEDAMRQWLERERGPALRAF" misc_feature 2425040..2425903 /locus_tag="AGROH133_08520" /note="Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time; Region: ribokinase_group_B; cd01945" /db_xref="CDD:29367" misc_feature order(2425160..2425162,2425766..2425768,2425775..2425777) /locus_tag="AGROH133_08520" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:29367" misc_feature order(2425577..2425579,2425673..2425675,2425760..2425762, 2425769..2425774,2425781..2425783,2425847..2425849, 2425856..2425858) /locus_tag="AGROH133_08520" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:29367" gene 2426119..2427177 /locus_tag="AGROH133_08521" /db_xref="GeneID:10268206" CDS 2426119..2427177 /locus_tag="AGROH133_08521" /note="Peptidase family S58; L-aminopeptidase/D-esterase" /codon_start=1 /transl_table=11 /product="aminopeptidase" /protein_id="YP_004279726.1" /db_xref="GI:325293862" /db_xref="GeneID:10268206" /translation="MHQTTRPRLRDIGLPPGHFETGPLNAITDVEGVTIGHSTVIEGD TIRTGATAILPHGGNLFQDKVPAAFAVYNGFGKFAGSTQIEELGELETPVILTNTLAT GRAIETINRHTLAQPGNEKVVSINAVVGETNDSRLNDIRAGRPTVEEISAALKNAAAG PVAEGGVGAGTGTVAFGMKGGIGTASRIVTVAGEAYTLGVLVQSNYGGHLLVCGKPYV SPEHKDKDGSIVIIIATDAPLSSRNLKRLAARSFGGLSRTGAALSNGSGDYALAFSTN ERLRKTPARRKAVADFPELSNDAISPLFEAAIEATEEAILNSLCAATTTSGFNAGTGK VSTVEAISIDTLKTLLSA" misc_feature 2426164..2427114 /locus_tag="AGROH133_08521" /note="L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active...; Region: DmpA; cd02253" /db_xref="CDD:73149" misc_feature order(2426314..2426316,2426374..2426379,2426842..2426844, 2426854..2426856,2426863..2426865,2426992..2427006, 2427010..2427012) /locus_tag="AGROH133_08521" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:73149" misc_feature order(2426329..2426340,2426344..2426352,2426356..2426358, 2426362..2426367,2426374..2426376,2426416..2426418, 2426425..2426427,2426449..2426451,2426515..2426517, 2426863..2426868,2426899..2426913,2427007..2427009, 2427019..2427021,2427028..2427030) /locus_tag="AGROH133_08521" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:73149" misc_feature order(2426515..2426517,2426731..2426733,2426800..2426802, 2426914..2426919) /locus_tag="AGROH133_08521" /note="active site pocket [active]" /db_xref="CDD:73149" misc_feature 2426797..2426802 /locus_tag="AGROH133_08521" /note="cleavage site" /db_xref="CDD:73149" gene 2427198..2428064 /gene="dat" /locus_tag="AGROH133_08522" /db_xref="GeneID:10268207" CDS 2427198..2428064 /gene="dat" /locus_tag="AGROH133_08522" /EC_number="2.6.1.21" /note="catalyzes the transamination of D-amino acids and their alpha-keto acids; Branched-chain amino acid aminotransferase/4- amino-4-deoxychorismate lyase" /codon_start=1 /transl_table=11 /product="D-alanine aminotransferase" /protein_id="YP_004279727.1" /db_xref="GI:325293863" /db_xref="GeneID:10268207" /translation="MTSQSGRIVYLNGEFLPEAEARLSIFDRGFLFGDGIYEVTSVLE GKLIDSDLHMARLERSAREIDVPLPVTTKEIVEAERRLIADNNLVEGMIYLQLTRGAE DRNFLFSADLKPTLVMFTQDKKLVGTAVEEAGIAVKSVPDQRWARRDIKTVCLLPQVM AKRIAKAEGCDEAWMIEDGFVTEGASSTAYIITGDRKIITRGNSNKTLPGCTRLAALQ LAKEAGFTLEERPFTLEEAMNADEACLTSASNFVVSVTKIDGKPVGDGKPGAMVKRLR ALYLENAHRTAI" misc_feature 2427213..2428052 /gene="dat" /locus_tag="AGROH133_08522" /note="branched-chain amino acid aminotransferase; Provisional; Region: PRK12479" /db_xref="CDD:183549" misc_feature 2427225..2428034 /gene="dat" /locus_tag="AGROH133_08522" /note="D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-...; Region: D-AAT_like; cd01558" /db_xref="CDD:29569" misc_feature order(2427261..2427266,2427270..2427299,2427306..2427308, 2427477..2427479,2427483..2427485,2427489..2427491, 2427540..2427542,2427552..2427554,2427651..2427665, 2427669..2427674,2427681..2427686,2427696..2427698, 2427753..2427755) /gene="dat" /locus_tag="AGROH133_08522" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:29569" misc_feature order(2427291..2427293,2427306..2427308,2427363..2427365, 2427648..2427650,2427660..2427662,2427744..2427746, 2427828..2427833,2427939..2427941) /gene="dat" /locus_tag="AGROH133_08522" /note="substrate-cofactor binding pocket; other site" /db_xref="CDD:29569" misc_feature order(2427306..2427308,2427363..2427365,2427648..2427650, 2427831..2427833,2427939..2427941) /gene="dat" /locus_tag="AGROH133_08522" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:29569" misc_feature 2427648..2427650 /gene="dat" /locus_tag="AGROH133_08522" /note="catalytic residue [active]" /db_xref="CDD:29569" gene complement(2428071..2428967) /locus_tag="AGROH133_08523" /db_xref="GeneID:10268208" CDS complement(2428071..2428967) /locus_tag="AGROH133_08523" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004279728.1" /db_xref="GI:325293864" /db_xref="GeneID:10268208" /translation="MEIKWLEDFLALAGTLNFSKAAEERHVTQSAFSRRIKQLEAWVG ATLVDRASYPSRLTEAGVKFVPVAQETLKQLYHARRTLLQEDGEDARTVRLTALHTLS FTFFPDWLKRVNEKAGPLFSVLRPDSGSMEENLNSLVDGQSDFLLTYAHPEVPMLLDA QTFEFRMLGAENIIPVSAPAEDGAPLHSLTEGAKKPFAYLDYEKASFFGPLLRDLLSA RLPKFERVHEGSMSVGLKAMAMAGWGVAWVPESLMRHELDSGALVRAADHSFDIAVDI RLYRSKENRRPVVERIWAVLED" misc_feature complement(2428089..2428967) /locus_tag="AGROH133_08523" /note="cell density-dependent motility repressor; Provisional; Region: PRK10082" /db_xref="CDD:182228" misc_feature complement(2428785..2428961) /locus_tag="AGROH133_08523" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2428074..2428709) /locus_tag="AGROH133_08523" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2429056..2430609) /locus_tag="AGROH133_08525" /db_xref="GeneID:10268209" CDS complement(2429056..2430609) /locus_tag="AGROH133_08525" /EC_number="3.4.16.4" /note="Beta-lactamase-type transpeptidase fold; Beta-lactamase class C and other penicillin binding proteins" /codon_start=1 /transl_table=11 /product="beta-lactamase" /protein_id="YP_004279729.1" /db_xref="GI:325293865" /db_xref="GeneID:10268209" /translation="MRLPTRPTKTRDRTMSQQFDWNAASTLAESFVSQWAGNEPGGAV IGFDLNGIRFAHAGGVESLSTFAPFTPKSVVRYASVTKHAFCAMVLAHSDLIGLDDPL GKHLPELQSPLCDVTVGQALDMSGGLPDTRECLSLLGLSVYTETKAGPLLDYLSRLTR LNFPAGSEVSYSNTGYRLVEAALERHGFRFDDFVQTQIAGPFGVFLKAPDVWNDPVDG LVPGYWKAESNWQLSAAGLHISASGSLAGSAEALTRWLQGLMRGEGSFAAVLDGLSTE RRLADGRMSEYGLGLRWSHLGDRRFVGHGGSHPGYKTYFLLDPENGTGFVVVSNREDT NGFKIALESVAALTGLPLPKPAASLPEGLYVTESGPWWLEIKGSTSTFIDGDDTLYED ADGWVSSRSASSPMLLRLEGDAIVGEAGHAARRFLPVGDHAVPDELSGSWRSTEGAEF TISGSSLTMGIGPTRRSMPLTALGNGRFLFTLSDGPWTKRICLNQLSDGRIELVASRA RMIEYSRSL" misc_feature complement(2429560..2430561) /locus_tag="AGROH133_08525" /note="Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]; Region: AmpC; COG1680" /db_xref="CDD:31866" misc_feature complement(2429560..2430504) /locus_tag="AGROH133_08525" /note="Beta-lactamase; Region: Beta-lactamase; cl01009" /db_xref="CDD:194006" gene complement(2430684..2431424) /gene="dppF" /locus_tag="AGROH133_08526" /db_xref="GeneID:10268210" CDS complement(2430684..2431424) /gene="dppF" /locus_tag="AGROH133_08526" /note="ABC transporter nucleotide-binding protein/ATPase (dipeptide); ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component" /codon_start=1 /transl_table=11 /product="dipeptide ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279730.1" /db_xref="GI:325293866" /db_xref="GeneID:10268210" /translation="MIDVENLRIKFGDREVVKGVSFSVEKGGSFGIVGESGSGKSTIL RAMAGLNESWEGRIAFAGKDAPLKRTPEFFRQVQMVFQDPYGSLHPRQTIDRILSELP LVHGMDNIEKRIQQALSDVALPQAVRFRYPHQLSGGQRQRVAIARALIADPQVLLLDE PTSALDVSVQAEILNLLQDLRAARNLTYILVSHNLAVIAHLCPQVGVMLNGEMVEQLN AGDLREGRTKHPHTEELRSLSIRLEEPA" misc_feature complement(2430729..2431424) /gene="dppF" /locus_tag="AGROH133_08526" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124" /db_xref="CDD:31321" misc_feature complement(2430777..2431424) /gene="dppF" /locus_tag="AGROH133_08526" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(2431302..2431325) /gene="dppF" /locus_tag="AGROH133_08526" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(2430846..2430848,2430945..2430950, 2431179..2431181,2431299..2431307,2431311..2431316)) /gene="dppF" /locus_tag="AGROH133_08526" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(2431179..2431190) /gene="dppF" /locus_tag="AGROH133_08526" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(2430993..2431022) /gene="dppF" /locus_tag="AGROH133_08526" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(2430945..2430962) /gene="dppF" /locus_tag="AGROH133_08526" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(2430927..2430938) /gene="dppF" /locus_tag="AGROH133_08526" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(2430840..2430860) /gene="dppF" /locus_tag="AGROH133_08526" /note="H-loop/switch region; other site" /db_xref="CDD:73016" gene complement(2431421..2432251) /gene="dppD" /locus_tag="AGROH133_08527" /db_xref="GeneID:10268211" CDS complement(2431421..2432251) /gene="dppD" /locus_tag="AGROH133_08527" /note="ABC transporter nucleotide-binding protein/ATPase (dipeptide); ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component" /codon_start=1 /transl_table=11 /product="dipeptide ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279731.1" /db_xref="GI:325293867" /db_xref="GeneID:10268211" /translation="MLVEIENLKIAFQTRTSRFEAVRGVSMKLGTEKLGIVGESGSGK SLTARALMKLLPSNADIRADKLSFDGIDVLSASEKQMRQIRGKRAGFILQDPKYSLNP VKTMGAQIAEAWRAHKGGSKRAAMEAAIALLDQVKIRNPRQVASSYAHEVSGGMGQRV MIAMMLAPDPELLIADEPTSALDATVQAEILRLIEELVSERGMGLILISHDLPLVSHF CDRVAVMYSGRVMEELKASELLKAQHPYTQGLLNCIPSLTHPRERLPVLNRDAAWSSL " misc_feature complement(2431469..2432251) /gene="dppD" /locus_tag="AGROH133_08527" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124" /db_xref="CDD:31321" misc_feature complement(2431553..2432248) /gene="dppD" /locus_tag="AGROH133_08527" /note="The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257" /db_xref="CDD:73016" misc_feature complement(2432117..2432140) /gene="dppD" /locus_tag="AGROH133_08527" /note="Walker A/P-loop; other site" /db_xref="CDD:73016" misc_feature complement(order(2431622..2431624,2431721..2431726, 2431970..2431972,2432114..2432122,2432126..2432131)) /gene="dppD" /locus_tag="AGROH133_08527" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73016" misc_feature complement(2431970..2431981) /gene="dppD" /locus_tag="AGROH133_08527" /note="Q-loop/lid; other site" /db_xref="CDD:73016" misc_feature complement(2431769..2431798) /gene="dppD" /locus_tag="AGROH133_08527" /note="ABC transporter signature motif; other site" /db_xref="CDD:73016" misc_feature complement(2431721..2431738) /gene="dppD" /locus_tag="AGROH133_08527" /note="Walker B; other site" /db_xref="CDD:73016" misc_feature complement(2431703..2431714) /gene="dppD" /locus_tag="AGROH133_08527" /note="D-loop; other site" /db_xref="CDD:73016" misc_feature complement(2431616..2431636) /gene="dppD" /locus_tag="AGROH133_08527" /note="H-loop/switch region; other site" /db_xref="CDD:73016" misc_feature complement(<2431451..2431561) /gene="dppD" /locus_tag="AGROH133_08527" /note="Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097" /db_xref="CDD:195461" gene complement(2432255..2433157) /gene="dppC" /locus_tag="AGROH133_08528" /db_xref="GeneID:10268212" CDS complement(2432255..2433157) /gene="dppC" /locus_tag="AGROH133_08528" /note="ABC transporter transmembrane protein (dipeptide); ABC-type dipeptide/oligopeptide/nickel transport systems, permease components" /codon_start=1 /transl_table=11 /product="dipeptide ABC transporter transmembrane protein" /protein_id="YP_004279732.1" /db_xref="GI:325293868" /db_xref="GeneID:10268212" /translation="MMLATFRNWALDETPHSRRQAAWGNRYRIWLNLKSNPLAVVGLT IIIIFIALSLLAPFIAPYDPAAQNLGNRLAFPSAEHWFGTDELGRDILSRILYGGRVT LGMVIAVVVLVAPIGLAIGCIAGYFGGIVDTVLMRVTDVFLAFPRLILALAFVAALKP GVESAILAIALTAWPPYARLARAETMTVRGSDFVAAYRLTGASAWRIIARHIAPLCVP SLIVRITLDMSSIIITAASLGFLGMGAQPPSPEWGAMIATAKRFIFEQWWVATIPGIA IFLVSLAFNFLGDGLRDVLDPKGH" misc_feature complement(2432264..2433121) /gene="dppC" /locus_tag="AGROH133_08528" /note="D-ala-D-ala transporter subunit; Provisional; Region: PRK09881" /db_xref="CDD:182131" misc_feature complement(2432315..2432860) /gene="dppC" /locus_tag="AGROH133_08528" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(2432321..2432326,2432333..2432338, 2432342..2432347,2432354..2432359,2432393..2432398, 2432438..2432443,2432450..2432461,2432480..2432482, 2432489..2432494,2432534..2432536,2432585..2432587, 2432594..2432599,2432609..2432611,2432615..2432620, 2432627..2432629,2432633..2432635,2432639..2432644, 2432693..2432695,2432699..2432704,2432711..2432740, 2432744..2432755,2432783..2432785,2432798..2432803, 2432810..2432815)) /gene="dppC" /locus_tag="AGROH133_08528" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2432444..2432461,2432693..2432737)) /gene="dppC" /locus_tag="AGROH133_08528" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(2432357..2432359,2432393..2432395, 2432402..2432404,2432441..2432443,2432657..2432659, 2432693..2432695)) /gene="dppC" /locus_tag="AGROH133_08528" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(2432513..2432515,2432525..2432530, 2432546..2432584)) /gene="dppC" /locus_tag="AGROH133_08528" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(2433154..2434167) /gene="dppB" /locus_tag="AGROH133_08534" /db_xref="GeneID:10268213" CDS complement(2433154..2434167) /gene="dppB" /locus_tag="AGROH133_08534" /note="ABC transporter transmembrane protein (dipeptide); ABC-type dipeptide/oligopeptide/nickel transport systems, permease components" /codon_start=1 /transl_table=11 /product="dipeptide ABC transporter transmembrane protein" /protein_id="YP_004279733.1" /db_xref="GI:325293869" /db_xref="GeneID:10268213" /translation="MNKRVKSISSTLSSVILTLFGLMVITFLIGRVMPVDPVIAAVGD NAPEDVIVRVRAEMGLDQPLVVQFFHYVSQVLHGDFGNSILTRNPVWIDIKRVFPATF ELATAALILAALIGIPLGVWAAVKQGKLTDQIIRVVCLAGHSVPVFMLALISLLVFYA TLGVAPGPGRQDIIYDGMISPVTGLMTVDTLLAGDWDAFYDAIAHMVQPVCILAYFSM AYITRMTRAFMIDALKGEYVITARAKGLSAMTVIWGHAFPTVAVQLVTVLALTYAGLL EGAVVTETVFSWPGLGQYLTVSLMNADMNPVVGATLLIGLIYVGLNLLADVLYRVMDP RVR" misc_feature complement(2433157..2434110) /gene="dppB" /locus_tag="AGROH133_08534" /note="ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:30946" misc_feature complement(2433157..2434107) /gene="dppB" /locus_tag="AGROH133_08534" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cl00427" /db_xref="CDD:193813" gene complement(2434170..2435765) /gene="dppA" /locus_tag="AGROH133_08542" /db_xref="GeneID:10268214" CDS complement(2434170..2435765) /gene="dppA" /locus_tag="AGROH133_08542" /note="ABC transporter substrate-binding protein (dipeptide); ABC-type dipeptide transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="dipeptide ABC transporter substrate-binding protein" /protein_id="YP_004279734.1" /db_xref="GI:325293870" /db_xref="GeneID:10268214" /translation="MISRRNLLIAGAAVPFLSYAHIPAFAATPKDILVVAQQLDNMTS LDPHEGFEAVGGEIMSNMYQKLVRANRDDSTKVDPVIAKSWEADAESKVFTFVIGDDA TFSSGAKVTAEDVAFSLQRAIKMNKSPAFIIGQFGFTPDNAETTIVAADEKTVKLTTA KPTAISFLLYCLSANIGAIVEKKAVLANASGEDLGNGWLQKNSAGSGDFMLQAWKPSE SVALTVNPNGPYKGNIKRVILRHVTDPSSQLLMLQKGDIDIARDLTSEQLRTVQNDAN IELQRKSIASLVLISLNQGNENLAKPQVWQAIKWALDYKGMQENIVPLTHKVHQSFEP EGFPGAVNDTPYQRDVEKAKALMAEAGLADGFEITMDHYSAQPYPDLAQAIQANLADI GIKVRLQSAENRQVLTKMRGREHQMALSAWGTDYFDPHSNADVFNINKDNGDDAKSKP FLWRSRFKNDDFAAKAEAARDEKDPAKRIELYEALQREHMENSPFVFMFQTTKTAAFR KGVSGFELGVLSEGNSYHDAKKA" misc_feature complement(2434224..2435681) /gene="dppA" /locus_tag="AGROH133_08542" /note="The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_7; cd08512" /db_xref="CDD:173877" misc_feature complement(2434434..2435540) /gene="dppA" /locus_tag="AGROH133_08542" /note="Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496" /db_xref="CDD:189574" gene 2436001..2437041 /locus_tag="AGROH133_08545" /db_xref="GeneID:10268215" CDS 2436001..2437041 /locus_tag="AGROH133_08545" /EC_number="3.4.13.19" /note="Membrane dipeptidase (Peptidase family M19); Zn-dependent dipeptidase, microsomal dipeptidase homolog" /codon_start=1 /transl_table=11 /product="membrane dipeptidase" /protein_id="YP_004279735.1" /db_xref="GI:325293871" /db_xref="GeneID:10268215" /translation="MTDEKTVPVFDGHNDVLLRLWRSGNASPETLLIEGDTVGHIDLP RARKGGLAGGLCAIYVPSPSMEKDANGDFTTPAEADALKATLGMAALLFRAEKQSGGA LKVCRTAAEIRSAMAEGAFASVFHIEGAEAIGADLDALHVLHEAGLRTLGPVWSRPNI FAYGVPFRFPSTPDIGPGLTDAGKRLVKTCNELKIMVDLSHMNEQGFWDIAKISDAPL VASHSNTYALCNHSRNLTDRQLDAIRDTGGLAGINFGVLFLRQDGVKNPATDLGELVR HVDYIVNRIGIDHVALGSDFDGTTIPAAMKDAADLQLLVTALRNGGYDDAALAKICHG NWVRVLEKTWGA" misc_feature 2436022..2437017 /locus_tag="AGROH133_08545" /note="renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics...; Region: rDP_like; cd01301" /db_xref="CDD:30044" misc_feature order(2436037..2436039,2436043..2436045,2436175..2436177, 2436382..2436384,2436601..2436603,2436664..2436666, 2436697..2436699,2436883..2436885,2436892..2436894) /locus_tag="AGROH133_08545" /note="active site" /db_xref="CDD:30044" misc_feature order(2436181..2436183,2436244..2436252,2436256..2436261, 2436268..2436270,2436280..2436282,2436412..2436417, 2436421..2436426,2436433..2436438) /locus_tag="AGROH133_08545" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:30044" gene complement(2437102..2437395) /locus_tag="AGROH133_08546" /db_xref="GeneID:10268216" CDS complement(2437102..2437395) /locus_tag="AGROH133_08546" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279736.1" /db_xref="GI:325293872" /db_xref="GeneID:10268216" /translation="MNMPTRIVISLIAALLVGGGYMAYDKMRGAEWVVSPQQIADAKA GGQAGYESRPGTVTVLPIRSETADVLPIKWAIAGLVAGLLAFRSTGKKKAAKA" gene 2437671..2440271 /gene="lpiA" /locus_tag="AGROH133_08549" /db_xref="GeneID:10268217" CDS 2437671..2440271 /gene="lpiA" /locus_tag="AGROH133_08549" /note="Protein of unknown function DUF470; Uncharacterized conserved protein" /codon_start=1 /transl_table=11 /product="protein regulated by acid pH" /protein_id="YP_004279737.1" /db_xref="GI:325293873" /db_xref="GeneID:10268217" /translation="MADKSEIIQTDITESPVESFFARNRPYLTAIAITLIFVMMTFAI YRLTSEVRYDDVIAALLDTSLPAILLAMVFTALSFLSLIFYDANAIEYVGKKVRFPSM AATAFAAYAIGNTAGFGPLSGGAIRFRAYSRLGLSPGDIARVIAFVTLSFGLGLLSVS ALSTFIVAPRIAAIIGLDPTVLRGGALAVIAVLVTTAYVGRNGKAIRLGKWRLRLPDS RTSSRQFLVSAFDIAASASVLYVLLPETHLGWPTFFAIYATAVGLGVLSHVPAGLGVF ETVMVAGLGNAISVDQLLGSLVLYRVIYHVLPLVVAILVMIVSEMKQFAAKPVVSDIS QLAVRLAPPLLSTFAIILGTMLIFSSVTPTPGSNLDFLSNFVPLPIIEAAHFLTSILG LGLVVASRGLGQRLDGAWWIALVAASLALILSLVKAIAVFEAIFLGIFIAALALNMRS FNRHASLVKQALGPSWLAAMAVIIAGAATILLFVYRDTDYSHTLWWEFEFSEEAPRGL RALLGLVLASSTIAIFSLMRPVTFKPDSIQPEDVERATDIVMQQDSADANLVRMGDKH VMFSESGSAFIMYGIQGRSWIAFADPVGNEEDFPDLVWQFVESARSAGARAAFYQISP FLLSHCADAGLRAFKLGELALVDLTAFELKGGKLATLRQSLSRGARDGLTFEVVEQSH VADILDDLKQVSDGWLTHHNTREKRFSLGAFEPNYILSQPVAVLRKDGKITAFANLMV TDTKKEATVDLMRFSPDAPRGSMDFLFVSIMQHLREAGYESFNLGMAPMSGMSKRDAA PVWDRIGSTLFEHGERFYNFKGLRAFKTKFHPKWEPRYLAVQNGADAALALMDATVLI SGGVRGVIGK" misc_feature 2437743..2438654 /gene="lpiA" /locus_tag="AGROH133_08549" /note="Predicted integral membrane protein [Function unknown]; Region: COG0392" /db_xref="CDD:30741" misc_feature 2437794..2438609 /gene="lpiA" /locus_tag="AGROH133_08549" /note="Uncharacterised protein family (UPF0104); Region: UPF0104; cl04219" /db_xref="CDD:194802" misc_feature 2438661..2440268 /gene="lpiA" /locus_tag="AGROH133_08549" /note="Uncharacterized conserved protein [Function unknown]; Region: COG2898" /db_xref="CDD:32723" misc_feature 2439327..2440187 /gene="lpiA" /locus_tag="AGROH133_08549" /note="Uncharacterized conserved protein (DUF2156); Region: DUF2156; cl12090" /db_xref="CDD:196332" gene 2440268..2441653 /gene="acvB" /locus_tag="AGROH133_08563" /db_xref="GeneID:10268218" CDS 2440268..2441653 /gene="acvB" /locus_tag="AGROH133_08563" /note="Type IV secretory pathway, VirJ component" /codon_start=1 /transl_table=11 /product="hchromosomal virulence protein B" /protein_id="YP_004279738.1" /db_xref="GI:325293874" /db_xref="GeneID:10268218" /translation="MRKYSMLKAALAASALFLSPLFASSAAFSQDKPAYDTGMIPAEH IMVPDGEILASVFLISDADGWTSTDEERAKALVEKGAAVVGIDFKEYLKALEADDDEC IYMISDIESLSQQIQRTAGTASYRQPILTGIGKGGTLALAMIAQSPVSTVQEAIAVDP KAGLPLEKILCTPATKDKVDGETVYGLTDGPLPAPVSVLFTPDADQKGRDHVNALVKL HPDIEVTDVTGKADEILSQTLSDKVDAAGDTSSPLGLPITVLETSPAMDTMAVIYSGD GGWRDLDEEVGGALQKQGIPVIGVDALRYFWKEKQPQEVANDLARIIDTYRKEWKVRN VVLIGYSFGADIIPATYNLLPERAKSHVVQLTLLGLSTEVDFEISVQGWLGVAGEGKG GKTIDDIVKIDPKLVQCVYGTEEEDEDPCPGLKAKGVETVGIEGGHHFDEDYEGLAKR IVTSLKTRLPK" misc_feature 2440355..2441647 /gene="acvB" /locus_tag="AGROH133_08563" /note="Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]; Region: VirJ; COG3946" /db_xref="CDD:33727" misc_feature 2441063..2441644 /gene="acvB" /locus_tag="AGROH133_08563" /note="Bacterial virulence protein (VirJ); Region: VirJ; pfam06057" /db_xref="CDD:114761" gene 2441942..2443267 /gene="telA" /locus_tag="AGROH133_08566" /db_xref="GeneID:10268219" CDS 2441942..2443267 /gene="telA" /locus_tag="AGROH133_08566" /note="DNA breaking-rejoining enzyme, catalytic core" /codon_start=1 /transl_table=11 /product="protelomerase" /protein_id="YP_004279739.1" /db_xref="GI:325293875" /db_xref="GeneID:10268219" /translation="MLARKTKTPVLVERIDQFVGRVREAMKSSETLRNKKIRDLWDAE VRYHFDNGRTEKTLELYIMKYRYALKAEFGAKSTPLAICNMKKLRERLKTYIERADYP KTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGLGSKEEMQALWDAEIAVMK GRAQTTIISYITKYRNAIREAFGDEHPMLKIATGDAAMYDEARRVKMEKIANKHGALI TFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRRPYEVFTQAEFSPAPYGKGVSKWS ILFNGQAKTKQGEGTKFGITYEIPVLARSATILSAYQRLRESGQGKLWHGMSIDDFSS ETRLLLRDTVFNLFEDLWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGH NNNDLETSLSYMTYTLPEDRDDALARAKRTNERTLLQMATIAPASRKNP" gene 2443645..2445972 /locus_tag="AGROH133_08567" /db_xref="GeneID:10268220" CDS 2443645..2445972 /locus_tag="AGROH133_08567" /note="Protein of unknown function DUF1217" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279740.1" /db_xref="GI:325293876" /db_xref="GeneID:10268220" /translation="MVLPAYTTYALYNRDMELSLKRVANDPVVSRDAKYYADNIGTVK NLDAFLKDFRLYSYAMKAHGLEEMIYATAFMKKVLESNLNDPNSFANKLKDTRYRDFA ASFDFGTIKAEKSVQTKSQQDRLIATYHATIEQEGAELKEETRFYNIAIEKVGHVDDI FKNTRVRDYIFKSFGIDPETFSYKHVKNVLTSDISNADSYINKTYKSLIPEWKAKAAD LRIERAGVASTDKPALAKIDYLISQYNKRINDANKLFEMAAAFNFRDDGRVDDGMPAQ TAAQRRLINETYVLSNPRLTQAGAVLNREYFVDKMKTITEASQMTQFARLRTMLIVSF NLTDNDETDKKIGWAVLQDPNDPQSPIHKEKDKGLVDLARAFNFGADGKIKTGKVAQT AEQLNTMMNLYFSRYDDKDEAADEKAIKNYQRYIGLTKNLEDFLSNAQGAVIIRNFAL KAFDITAEEASSFTLKRVFTSDLSDPKSYVYTLKDERFVRLAKAFNFDAEGKIGSPRL AQSENEITRISRNYLKEVTRWDKDKKVREKGEKEVAYYRQKMETIETVDQLLSDRRLL DFMLIAQRIDPKTVTTDYLKKIFKSDLKDPKSFANTEKDARFRALAGSFNFDAKGNIV AKAGQSVQNTRSLMETRDKYVRQTLEQRVGEENSGVRLALYFKRMAASISNPYDILAD NALAEFTRTALGIPAETANSKVDAQAKMIEKKLKIKDLQDPKKVEKLVNRFLLTFEAN NATSDPRLALFGSGSTSISGNTLATLGQLRSRRRG" misc_feature <2443735..2443911 /locus_tag="AGROH133_08567" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature 2443828..2444247 /locus_tag="AGROH133_08567" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature 2444164..>2444658 /locus_tag="AGROH133_08567" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature 2444644..2445084 /locus_tag="AGROH133_08567" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature 2444998..2445441 /locus_tag="AGROH133_08567" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" misc_feature 2445367..2445825 /locus_tag="AGROH133_08567" /note="Protein of unknown function (DUF1217); Region: DUF1217; pfam06748" /db_xref="CDD:148384" gene complement(2446026..2447312) /locus_tag="AGROH133_08568" /db_xref="GeneID:10268221" CDS complement(2446026..2447312) /locus_tag="AGROH133_08568" /note="Major facilitator superfamily; Permeases of the major facilitator superfamily" /codon_start=1 /transl_table=11 /product="benzoate transport protein" /protein_id="YP_004279741.1" /db_xref="GI:325293877" /db_xref="GeneID:10268221" /translation="MSTNYMSAASVRTKNPAGVIATCGLMIMFDGYDLVVYGAVAPAL LKEGAWALNPAMVGRAAALTLVGMLLGALFAGTMADRIGRRKVVLISLAGFSAMMIAS AMTPNFLAFEITRFFAGLGLGALLPTVTALVLEFSPPKRRAQANSLSFLGYLIGGIIS GLMGILLLESYGWRPLMLIGGLPLILLPIFMRFLPESPEWLASKGRQAEADGICDTYG LQRITPHAKIQKGGVGALFSEGRLLSTLNAWGIHFCSLLLTFGMVNWLPTIMNKMGYD ISSALSFSIMLNVGAAIGILIGGRFADKGNVKVVVAVLFAIGAASIWALTVNKGPLLY LFVALAGAGTIGTQILANVLVGRLYPVHIRGTGLGFSLAVGRLGGIAGPMIGGLVLQR GLAPEWNFYIFGSVALVGLALTVLTLLYRTSGDGRV" misc_feature complement(2446143..2447258) /locus_tag="AGROH133_08568" /note="benzoate transport; Region: 2A0115; TIGR00895" /db_xref="CDD:162095" misc_feature complement(<2446875..2447255) /locus_tag="AGROH133_08568" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" misc_feature complement(2446134..>2446589) /locus_tag="AGROH133_08568" /note="The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174" /db_xref="CDD:119392" gene complement(2447533..2447871) /locus_tag="AGROH133_08581" /db_xref="GeneID:10268222" CDS complement(2447533..2447871) /locus_tag="AGROH133_08581" /note="unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the reactions based on sequence and structure similarity; Uncharacterized protein conserved in bacteria" /codon_start=1 /transl_table=11 /product="YciI-like protein" /protein_id="YP_004279742.1" /db_xref="GI:325293878" /db_xref="GeneID:10268222" /translation="MTVGSDRSRLYVRFAESDPAAAEQRLAQMSAHKAHLRNEDGVPE GFRILASGPMQAESGGSAAALIIAEARCIEDVMAFSDADPFVIHGVYKRIRILNWTPT LSKISGLEGD" misc_feature complement(2447557..2447844) /locus_tag="AGROH133_08581" /note="YCII-related domain; Region: YCII; cl00999" /db_xref="CDD:186294" gene complement(2447868..2448755) /locus_tag="AGROH133_08582" /db_xref="GeneID:10268223" CDS complement(2447868..2448755) /locus_tag="AGROH133_08582" /EC_number="1.13.11.1" /note="chlorocatechol 1,2-dioxygenase; Protocatechuate 3,4-dioxygenase beta subunit" /codon_start=1 /transl_table=11 /product="catechol 1,2-dioxygenase" /protein_id="YP_004279743.1" /db_xref="GI:325293879" /db_xref="GeneID:10268223" /translation="MDMTTTGDDGYFVEERSAETVIARMRDCEDPRLKEIMAVVTRKL HEAVKEIEPTEEEWMKAIHFLTEVGQICNEWRQEWILFSDILGVSMLVDAINHRKPSG ASESTVLGPFHVADAPEMPMGANICLDGKGEDMLVTGRILDTDGVPVAGARIDVWQAN DEGFYDVQQKGIQPDFNLRGVFVTGEDGRYWFRAAKPKYYPIPDDGPVGQLLRAMGRH PYRPAHLHYIVSAEGFTTLVTHIFDPDDPYIRSDAVFGVKESLLADFQRVEDTQRAQE LGFANGWFWSVDHDFVLAR" misc_feature complement(2447874..2448713) /locus_tag="AGROH133_08582" /note="Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form...; Region: 1,2-HQD; cd03461" /db_xref="CDD:48025" misc_feature complement(order(2448105..2448107,2448468..2448470, 2448483..2448485,2448504..2448509,2448582..2448587, 2448603..2448611,2448621..2448623,2448639..2448644, 2448648..2448650,2448654..2448656,2448660..2448662)) /locus_tag="AGROH133_08582" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:48025" misc_feature complement(2447883..2448584) /locus_tag="AGROH133_08582" /note="Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]; Region: PcaH; COG3485" /db_xref="CDD:33288" misc_feature complement(order(2448078..2448080,2448084..2448086, 2448093..2448095,2448156..2448158,2448261..2448263, 2448420..2448425,2448504..2448506)) /locus_tag="AGROH133_08582" /note="active site" /db_xref="CDD:48025" gene complement(2448796..2449851) /gene="macA" /locus_tag="AGROH133_08583" /db_xref="GeneID:10268224" CDS complement(2448796..2449851) /gene="macA" /locus_tag="AGROH133_08583" /EC_number="1.3.1.32" /note="Iron-containing alcohol dehydrogenase; Alcohol dehydrogenase, class IV" /codon_start=1 /transl_table=11 /product="maleylacetate reductase" /protein_id="YP_004279744.1" /db_xref="GI:325293880" /db_xref="GeneID:10268224" /translation="MQPFVYTTAPARIVFGTGSSVGVAEEIRRLGLSRALVLSTPHQK GDAEALAARLGPLAAGVFADAAMHTPVEVTKRAVEAYRAAGADCVVSLGGGSTTGLGK AIALRTDAPQIVIPTTYAGSEVTPILGQTENGAKTTLRGPEILPEVVIYDAELTLGLP VGISMTSGLNAMAHAAEALYARDRNPIASMMAVEGLRAMIEALPGVRMEPQDTKARET ALYGAWLCGTVLGAVGMSLHHKLCHTLGGSLDLPHAETHAVLLPHTIAYVEQAVPDQL APLAALVGGRAGTGLYDFAARLGAPASLAALGVGEEDLDAMAELATANPYWCPRPVEK TAIRALLQRAFEGARPE" misc_feature complement(2448817..2449842) /gene="macA" /locus_tag="AGROH133_08583" /note="Alcohol dehydrogenase, class IV [Energy production and conversion]; Region: EutG; COG1454" /db_xref="CDD:31643" misc_feature complement(2448826..2449824) /gene="macA" /locus_tag="AGROH133_08583" /note="Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes; Region: MAR; cd08177" /db_xref="CDD:173936" misc_feature complement(order(2449093..2449095,2449123..2449125, 2449135..2449137,2449330..2449332,2449342..2449344, 2449363..2449365,2449387..2449389,2449441..2449446, 2449492..2449494,2449498..2449503,2449546..2449548, 2449555..2449557,2449564..2449572,2449732..2449734)) /gene="macA" /locus_tag="AGROH133_08583" /note="active site" /db_xref="CDD:173936" misc_feature complement(order(2448922..2448924,2448928..2448930, 2449369..2449374,2449726..2449728)) /gene="macA" /locus_tag="AGROH133_08583" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:173936" misc_feature complement(order(2449093..2449095,2449135..2449137, 2449330..2449332,2449342..2449344)) /gene="macA" /locus_tag="AGROH133_08583" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:173936" gene complement(2449855..2450838) /locus_tag="AGROH133_08584" /db_xref="GeneID:10268225" CDS complement(2449855..2450838) /locus_tag="AGROH133_08584" /EC_number="4.1.1.46" /note="Amidohydrolase 2; Predicted metal-dependent hydrolase of the TIM- barrel fold" /codon_start=1 /transl_table=11 /product="reversible 2,6-dihydroxybenzoic acid decarboxylase" /protein_id="YP_004279745.1" /db_xref="GI:325293881" /db_xref="GeneID:10268225" /translation="MQGKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRL KLMDAHGIETMILSLNAPAVQAIPDKTKAIEIARRANDVLAEECAKRPDRFLAFAALP LQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVP FYLHPRNPLPQDSRIYDGHPWLLGPTWAFAQETAVHALRLMASGLFDEHPRLNIILGH MGEGLPYMMWRIDHRNAWVKLPPRYPAKRRFMDYFNENFHITTSGNFRTQTLIDAILE IGADRILFSTDWPFENIDHASDWFNATSIAEADRVKIGRTNARRLFKLDGA" misc_feature complement(2449864..2450832) /locus_tag="AGROH133_08584" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:193747" gene complement(2450885..2452114) /locus_tag="AGROH133_08585" /db_xref="GeneID:10268226" CDS complement(2450885..2452114) /locus_tag="AGROH133_08585" /EC_number="1.-.-.-" /note="Acyl-CoA dehydrogenase/oxidase, middle and N-terminal; Acyl-CoA dehydrogenases" /codon_start=1 /transl_table=11 /product="resorcinol hydroxylase" /protein_id="YP_004279746.1" /db_xref="GI:325293882" /db_xref="GeneID:10268226" /translation="MNDMSHAPQPAQTNPHVRLVGRVAGVADLFRSSARQTEEARRVP ASHIAALRGIGYFDVVKPRAFGGQGGEFAELVEANIELSAACASTGWVAGLLSAHQWL LAMFPEEAQADVWGENPDALLCGSYAPVKMAEAADGGYRLSGKWAFASGCENAQWSLC AAILPPQGEGRPVPAFLLVPASQYSIEDTWHVVGLAGTGSKTLVLDDVFVPKHRVLTF PDATSGHTPGGRLYAQEGLFNMPLLTGIPSCLASAGVGAAKGALAAYVDHVGGRVTRG AVAGGNNRMAEFPTIQLRVAEAAASVDAACEILLRDVARAQALSQARLEGWAEFSMDD RLLSRRGQSFSVSLALRAVQALNDSTGGVGLDLSNPVQRAWRDANAVGRHISMNWDAV GTMIGQSMLGLEPKGQY" misc_feature complement(2450909..2452051) /locus_tag="AGROH133_08585" /note="Naphthocyclinone hydroxylase; Region: NcnH; cd01159" /db_xref="CDD:173848" misc_feature complement(2450894..2452003) /locus_tag="AGROH133_08585" /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960" /db_xref="CDD:32143" misc_feature complement(order(2450933..2450935,2450939..2450941, 2450963..2450965,2451665..2451667,2451671..2451673)) /locus_tag="AGROH133_08585" /note="Flavin binding site [chemical binding]; other site" /db_xref="CDD:173848" gene complement(2452151..2452690) /gene="actI" /locus_tag="AGROH133_08586" /db_xref="GeneID:10268227" CDS complement(2452151..2452690) /gene="actI" /locus_tag="AGROH133_08586" /note="4-hydroxyphenylacetate 3-monooxygenase, reductase component; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family" /codon_start=1 /transl_table=11 /product="actinorhodin polyketide dimerase" /protein_id="YP_004279747.1" /db_xref="GI:325293883" /db_xref="GeneID:10268227" /translation="MTSALFGLNNLAPEGVGQNFRTTMRRFPATVTVITACATGDQRD HGMTVTAVTSVSMEPPSLLVCLNNRTFLHELLLCRPDFIVNVLTQDQIALSDAFSGKV SPEERFRNGEWQRHDNGVLYLPTAHAAIACRRVAAMPYGTHTVFIGQVVSADVSETTR PLLYENAQYCAASPAGLSA" misc_feature complement(2452172..2452621) /gene="actI" /locus_tag="AGROH133_08586" /note="Flavin Reductases; Region: FlaRed; cl00801" /db_xref="CDD:193940" gene 2452776..2453327 /locus_tag="AGROH133_08587" /db_xref="GeneID:10268228" CDS 2452776..2453327 /locus_tag="AGROH133_08587" /note="Bacterial regulatory protein, MarR; Transcriptional regulators" /codon_start=1 /transl_table=11 /product="transcriptional regulator, MarR family" /protein_id="YP_004279748.1" /db_xref="GI:325293884" /db_xref="GeneID:10268228" /translation="MGSPSPVFWSETIETDRLCRYSRWVRHVIRARVSQNGVLLVSYQ FTDSVPYLLNWVGVRLGERFSLRLASYDITLPMYRVLATLRQQESKTLTELSDLVSVE ISTLSRLVGQLVRRNLVSRERPVDNARIVRITLTPKGEELAEELMPIAAMFEKTAIEG LDPAEVKLFKSILRHIGRNIAGL" misc_feature 2452977..2453273 /locus_tag="AGROH133_08587" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" gene 2453432..2453818 /locus_tag="AGROH133_08589" /db_xref="GeneID:10268229" CDS 2453432..2453818 /locus_tag="AGROH133_08589" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279749.1" /db_xref="GI:325293885" /db_xref="GeneID:10268229" /translation="MSERLSPAYLTTLALVTASILVSACASTVMKSYIGAPITSVMLD YGPPDNIYSLGGGQQAYQWRKNKTQAVAGSSSGEVRTTRRGERYEVSETPGYVERIDC FYTFYTRNSGGEWYVTSFRQPSLECE" gene complement(2454067..2455464) /locus_tag="AGROH133_08591" /db_xref="GeneID:10268230" CDS complement(2454067..2455464) /locus_tag="AGROH133_08591" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004279750.1" /db_xref="GI:325293886" /db_xref="GeneID:10268230" /translation="MKRLFALQAFLLVLFVILLVGWIWIIDPRLEGANEEAVRIVAES VTKDGQGRAQVLPTPGLVELKQRYPNLWFLVRDADEIVLRYGEIPVPALAAVFPSSIE RARLEAGEKVRATMENRNTPAGRLQFIAGTEKGIPNDGLSLWISMQLDLEKDANGEIR WLTVLPGVGFVILIAVVPMLILTGIATLIVTPRAVGRSLGGLMETVSQAQSINFENRS ARINRSKVPSEIIPLVNAFNVALSKLDEGYNRRNRFLADAAHELRTPIAIARIRADLL PDDALSRQLRADIDRLTRVAHQLLEMQAVGVVELPAERQDLNILVERIATDLAPIAMD AGYEFDFEPSEGEAVFTVQTSIIEMAVVNLVRNAIDHGGGKGAITIRVGAAGFIDVCD EGPGIPVSEREQVFEPFHRVNTNSPGAGLGLNLVQKAAEIHGGRVVFLDLNPGFCVRL EIRSVASKDAAADTV" misc_feature complement(2454154..2455278) /locus_tag="AGROH133_08591" /note="heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386" /db_xref="CDD:162333" misc_feature complement(2454559..2454720) /locus_tag="AGROH133_08591" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature complement(order(2454568..2454570,2454580..2454582, 2454589..2454591,2454601..2454603,2454610..2454612, 2454649..2454651,2454658..2454660,2454670..2454672, 2454679..2454681,2454691..2454693,2454703..2454705)) /locus_tag="AGROH133_08591" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature complement(2454685..2454687) /locus_tag="AGROH133_08591" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature complement(2454109..2454396) /locus_tag="AGROH133_08591" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2454121..2454123,2454127..2454132, 2454145..2454147,2454151..2454153,2454196..2454207, 2454274..2454279,2454283..2454285,2454289..2454291, 2454295..2454297,2454355..2454357,2454364..2454366, 2454376..2454378)) /locus_tag="AGROH133_08591" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2454364..2454366) /locus_tag="AGROH133_08591" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2454199..2454201,2454205..2454207, 2454277..2454279,2454283..2454285)) /locus_tag="AGROH133_08591" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene complement(2455500..2456174) /locus_tag="AGROH133_08595" /db_xref="GeneID:10268231" CDS complement(2455500..2456174) /locus_tag="AGROH133_08595" /note="Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004279751.1" /db_xref="GI:325293887" /db_xref="GeneID:10268231" /translation="MRILLLEDEPEMARALLEALRRRDVLADHVRTIADADALARDGS YDVLVLDRRLPDGEGLNLVSSLRKARHSVPILVLTALGSVDHRVDGLDAGADDYLAKP FAIEELLARLRALHRRGPSLSSQYVSFGNLSIDPKSNEVTVAGAIIEFRRREYLALEA LMRRPNRIVTRSNLVEAVYNLDDEIESNALDAHISRIRKKLAQAEATVEIRAVRNIGY LIRANT" misc_feature complement(2455506..2456174) /locus_tag="AGROH133_08595" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature complement(2455854..2456165) /locus_tag="AGROH133_08595" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2455869..2455874,2455881..2455883, 2455938..2455940,2455998..2456000,2456022..2456024, 2456151..2456156)) /locus_tag="AGROH133_08595" /note="active site" /db_xref="CDD:29071" misc_feature complement(2456022..2456024) /locus_tag="AGROH133_08595" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2455998..2456006,2456010..2456015)) /locus_tag="AGROH133_08595" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2455866..2455874) /locus_tag="AGROH133_08595" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2455515..2455796) /locus_tag="AGROH133_08595" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature complement(order(2455524..2455526,2455539..2455541, 2455572..2455577,2455599..2455601,2455608..2455610, 2455662..2455667,2455722..2455724)) /locus_tag="AGROH133_08595" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene complement(2456314..2456943) /locus_tag="AGROH133_08596" /db_xref="GeneID:10268232" CDS complement(2456314..2456943) /locus_tag="AGROH133_08596" /note="Homeodomain-related; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="YP_004279752.1" /db_xref="GI:325293888" /db_xref="GeneID:10268232" /translation="MEATLNETGWRGSQEGWLEAAYQALLESGVDSVKILPLAKKLGL SRTSFYWFFRDREELLAALVSRWREKNTGSIVRQSEAYAETLAEAMLNVFDCWLDAGL FDNRFEFAVRSWALQSDDILAEVRKADQTRMDALSRMFMRFGHSENMADVRARTTYLV QIGYISMQSEEDMAVRMKRIPDYIAIYTGEVPQQRELDRFYARHGYRPG" misc_feature complement(2456407..2456913) /locus_tag="AGROH133_08596" /note="Transcriptional regulator [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:31500" misc_feature complement(2456755..2456892) /locus_tag="AGROH133_08596" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:144144" gene 2457089..2459125 /gene="stcD" /locus_tag="AGROH133_08598" /db_xref="GeneID:10268233" CDS 2457089..2459125 /gene="stcD" /locus_tag="AGROH133_08598" /EC_number="1.-.-.-" /note="NADH:flavin oxidoreductase / NADH oxidase family; NADH:flavin oxidoreductases, Old Yellow Enzyme family" /codon_start=1 /transl_table=11 /product="N-methylproline demethylase" /protein_id="YP_004279753.1" /db_xref="GI:325293889" /db_xref="GeneID:10268233" /translation="MSNDPLLQPYQLKHLTLRNRIIVTSHEPAYPEDGMPKGRYRAYT LERAKGGVAMTMTAGSAAVSKDSPPVFNNLLAYKDEIVPWIREMTDAVHEEGAAIMIQ LTHLGRRTRWDKGDWLPVLAPSHQREAAHRAFPKKIEDWDIERIIKDFADAAERMKAG GMDGVELEAYGHLIDQFVSPLTNELDGPYGGSLDNRMRFCFDVFRAMRERVGDDFILG VRYTADECLEGGTGKAEGLEISRRLRDSGLIDYLNVIRGHIDTDPGLTDVIPIQGMAN APHLDFAGEIRAATSFPTFHAAKIQDVATARYAIASGKVDMVGMTRAHMTDPHIVRKI MEKREDDIRPCVGANYCLDRIYQGGLAFCIHNPATGREETMPHEITKATESLKVVIVG AGPAGLEAARVCAERGHEVVVFEAANDPGGQIRLTAQSERRREMISIIDWRMSQCERL GVTFHFNSWAEADTVLSESPDVVIIATGGLPHTDVLSNGNDLVVSSWDIISGDVKPGT NVLVFDDAGDHAGLQAAEFLAKAGAKVEIMTPDRAFAPEVMAMNLVPYMRSLQKLDVT FTVTYRLEAAERNGNQLVAHVGSDYGGVTKSRTVDQIVVNHGTVPLDDLYFDLKPGSR NLGEISYDALLEGSAQTVERNPGGAYRLFRIGDAVAARNTHAAIYDALRLAKDI" misc_feature 2457104..2459122 /gene="stcD" /locus_tag="AGROH133_08598" /note="mycofactocin system FadH/OYE family oxidoreductase 2; Region: mycofact_OYE_2; TIGR03997" /db_xref="CDD:188512" misc_feature 2457104..2458135 /gene="stcD" /locus_tag="AGROH133_08598" /note="Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as...; Region: OYE_like_3_FMN; cd04734" /db_xref="CDD:73396" misc_feature order(2457161..2457163,2457167..2457169,2457263..2457265, 2457392..2457394,2457602..2457604,2457746..2457748, 2458049..2458054) /gene="stcD" /locus_tag="AGROH133_08598" /note="putative active site [active]" /db_xref="CDD:73396" misc_feature order(2457161..2457163,2457167..2457169,2457263..2457265, 2457392..2457394,2457746..2457748,2458049..2458054) /gene="stcD" /locus_tag="AGROH133_08598" /note="putative FMN binding site [chemical binding]; other site" /db_xref="CDD:73396" misc_feature order(2457596..2457598,2457602..2457604) /gene="stcD" /locus_tag="AGROH133_08598" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:73396" misc_feature 2457602..2457604 /gene="stcD" /locus_tag="AGROH133_08598" /note="putative catalytic residue [active]" /db_xref="CDD:73396" misc_feature 2458247..>2458354 /gene="stcD" /locus_tag="AGROH133_08598" /note="Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; cl14644" /db_xref="CDD:197445" gene complement(2459153..2460214) /gene="afuC" /locus_tag="AGROH133_08599" /db_xref="GeneID:10268234" CDS complement(2459153..2460214) /gene="afuC" /locus_tag="AGROH133_08599" /note="ABC transporter nucleotide-binding protein/ATPase (iron); ABC-type spermidine/putrescine transport systems, ATPase components" /codon_start=1 /transl_table=11 /product="iron ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279754.1" /db_xref="GI:325293890" /db_xref="GeneID:10268234" /translation="MISVKPGSVTFQNVRKTFGAFTAIPDLSLTIEPGTLVTLLGPSG CGKTTTLRMLAGLEHPTAGRILIGDKDVTMLPANERDVSMVFQSYALFPHMTALDNVA YGLQSSGLRKAEAREKAEEGLKLVGLAGMGHRLPAELSGGQQQRVAVARALVLEPQVL LLDEPLSNLDARLRRRVRTEIRELQQRLGFTAVYVTHDQDEALAVSDRIIVMKEGEIA QSGAPRELYEAPASSFIADFMGEANVVGCEVVSLEGADALIRVGGIDHRVAARNAKPG PAKLAVRPGSISITQSGGQGLAGRVLHSAYLGGHVEYEVETDIGTLFIIDHAVETSLP PESDVTLGFKNRGIALIQA" misc_feature complement(2459156..2460202) /gene="afuC" /locus_tag="AGROH133_08599" /note="ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842" /db_xref="CDD:33633" misc_feature complement(2459495..2460190) /gene="afuC" /locus_tag="AGROH133_08599" /note="P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop NTPase; cl09099" /db_xref="CDD:158411" misc_feature complement(2460071..2460094) /gene="afuC" /locus_tag="AGROH133_08599" /note="Walker A/P-loop; other site" /db_xref="CDD:72971" misc_feature complement(order(2459624..2459626,2459723..2459728, 2459954..2459956,2460068..2460076,2460080..2460085)) /gene="afuC" /locus_tag="AGROH133_08599" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:72971" misc_feature complement(2459954..2459965) /gene="afuC" /locus_tag="AGROH133_08599" /note="Q-loop/lid; other site" /db_xref="CDD:72971" misc_feature complement(2459771..2459800) /gene="afuC" /locus_tag="AGROH133_08599" /note="ABC transporter signature motif; other site" /db_xref="CDD:72971" misc_feature complement(2459723..2459740) /gene="afuC" /locus_tag="AGROH133_08599" /note="Walker B; other site" /db_xref="CDD:72971" misc_feature complement(2459705..2459716) /gene="afuC" /locus_tag="AGROH133_08599" /note="D-loop; other site" /db_xref="CDD:72971" misc_feature complement(2459618..2459638) /gene="afuC" /locus_tag="AGROH133_08599" /note="H-loop/switch region; other site" /db_xref="CDD:72971" misc_feature complement(2459186..2459377) /gene="afuC" /locus_tag="AGROH133_08599" /note="TOBE domain; Region: TOBE_2; cl01440" /db_xref="CDD:163979" gene complement(2460211..2462442) /gene="afuB" /locus_tag="AGROH133_08600" /db_xref="GeneID:10268235" CDS complement(2460211..2462442) /gene="afuB" /locus_tag="AGROH133_08600" /note="Binding-protein-dependent transport systems inner membrane component; ABC-type Fe3+ transport system, permease component" /codon_start=1 /transl_table=11 /product="iron ABC transporter transmembrane protein" /protein_id="YP_004279755.1" /db_xref="GI:325293891" /db_xref="GeneID:10268235" /translation="MTRGNRRLNIVLALGAFALVFLPWYRIEGGFFSFRWLSEFLSSP SNAPGVLQILVYGKPWLAGAGLFFIAGCLVRPIGDPMLRGKLLAWIGAAGLVVLILQG LAIGFTGWTWSVSENLFGVLSDGQPAMGAGAVVMSLVFVLFFAFGLAERGVMKGDAFV VGSISILAFLVTVFVFYPIGSMLIASVQDFDGSFNADGFIRNIQDPGIWSLGCVTGEE RCGVAWRTLFLALMTAFGSTVLGLGFALVATRTRFPFKKGLRLLTVLPIITPPFVIGL ALTLLFGRAGVVTEWLSYLFGIEPGRWLYGMTGIWIAQVLSFTPISFLVLIGVVEGVS PSMEEASQTLRADRWRTFWRVSLPLMKPGLANAFLIGFIESMADFGNPLVLGGTHGVL STEIFFAVVGSQNDPSRAAVLAIILLCFTLSAFLAQRFWLAGKNFATVTGKGDSGAHI ALPRGLSIGVHAVVVPWMVFTIVVYGMILVGGFVKTWGLDNSLTLDHYIRAFSVSFSN GSIAWTGVAWNSFWTTMEIALVSAPLTAAVGLLTAYIIVRQKFAGRNIFEFALMMSFA IPGTVIGVSYIMAFNLPPVEMTGSALILIACFVFRNMPVGVRGGIAAMSQLDKSLDEA SLTLRADSFRTIRKVILPLLRPAITAALVYSFVRAITSISAVIFLVSAQYNMATSYIV GLVENGEYGVAIAYSSMLIVVMITVITGFQLIVGERRLRRENRVAGLPSASSVPLAQE KTA" misc_feature complement(2460277..2461983) /gene="afuB" /locus_tag="AGROH133_08600" /note="ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178" /db_xref="CDD:31371" misc_feature complement(2461189..2461776) /gene="afuB" /locus_tag="AGROH133_08600" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(2461189..2461194,2461201..2461206, 2461210..2461215,2461222..2461227,2461255..2461260, 2461291..2461296,2461303..2461314,2461333..2461335, 2461342..2461347,2461387..2461389,2461438..2461440, 2461447..2461452,2461462..2461464,2461468..2461473, 2461480..2461482,2461486..2461488,2461492..2461497, 2461606..2461608,2461612..2461617,2461624..2461653, 2461657..2461668,2461696..2461698,2461711..2461716, 2461723..2461728)) /gene="afuB" /locus_tag="AGROH133_08600" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2461297..2461314,2461606..2461650)) /gene="afuB" /locus_tag="AGROH133_08600" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(2461225..2461227,2461255..2461257, 2461264..2461266,2461294..2461296,2461513..2461515, 2461606..2461608)) /gene="afuB" /locus_tag="AGROH133_08600" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(2461366..2461368,2461378..2461383, 2461399..2461437)) /gene="afuB" /locus_tag="AGROH133_08600" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" misc_feature complement(2460319..2460882) /gene="afuB" /locus_tag="AGROH133_08600" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits...; Region: TM_PBP2; cd06261" /db_xref="CDD:119394" misc_feature complement(order(2460319..2460324,2460331..2460336, 2460343..2460348,2460352..2460357,2460364..2460369, 2460397..2460402,2460439..2460444,2460451..2460462, 2460481..2460483,2460490..2460495,2460535..2460537, 2460586..2460588,2460595..2460600,2460610..2460612, 2460616..2460621,2460628..2460630,2460634..2460636, 2460640..2460645,2460718..2460720,2460730..2460759, 2460763..2460774,2460802..2460804,2460817..2460822, 2460829..2460834)) /gene="afuB" /locus_tag="AGROH133_08600" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2460445..2460462,2460718..2460723, 2460724..2460756)) /gene="afuB" /locus_tag="AGROH133_08600" /note="conserved gate region; other site" /db_xref="CDD:119394" misc_feature complement(order(2460367..2460369,2460397..2460399, 2460406..2460408,2460442..2460444,2460658..2460660, 2460718..2460720)) /gene="afuB" /locus_tag="AGROH133_08600" /note="putative PBP binding loops; other site" /db_xref="CDD:119394" misc_feature complement(order(2460514..2460516,2460526..2460531, 2460547..2460585)) /gene="afuB" /locus_tag="AGROH133_08600" /note="ABC-ATPase subunit interface; other site" /db_xref="CDD:119394" gene complement(2462529..2463554) /gene="afuA1" /locus_tag="AGROH133_08619" /db_xref="GeneID:10268236" CDS complement(2462529..2463554) /gene="afuA1" /locus_tag="AGROH133_08619" /note="Bacterial extracellular solute-binding protein, family 1; ABC-type Fe3+ transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="iron ABC transporter substrate-binding protein" /protein_id="YP_004279756.1" /db_xref="GI:325293892" /db_xref="GeneID:10268236" /translation="MRLTILSTLLFAGTALGTTSVQAAGELNLICSADVVICEQMKGD FEKSHDIKVNMVRLSSGETYAKVRAEARNPKTDIWWAGTGDPHMQAASENLTLEYKSP MLDQLQDWAVKQAESTGYRTVGVYAGALGWGYNTEIFKSKGYKEPKCWADLLAPELKG EIQIANPNSSGTAYTALASLVQIMGEDQAIDYLKKLNANISQYTKSGSAPVKAAARGE TALGIVFMHDAVAQTAEGFPVKSIAPCEGTGYEIGSMSIIKGARNLENAKTWYDWALK PEVQSRMKDAKSFQLPSNKTAEVPKEAPKFEDIKLIDYDFKTYGDPAKRKALLERWDR EVGAVAN" misc_feature complement(2462541..2463434) /gene="afuA1" /locus_tag="AGROH133_08619" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene complement(2463672..2464631) /gene="afuA2" /locus_tag="AGROH133_08621" /db_xref="GeneID:10268237" CDS complement(2463672..2464631) /gene="afuA2" /locus_tag="AGROH133_08621" /note="Bacterial extracellular solute-binding protein, family 1; ABC-type Fe3+ transport system, periplasmic component" /codon_start=1 /transl_table=11 /product="iron ABC transporter substrate-binding protein" /protein_id="YP_004279757.1" /db_xref="GI:325293893" /db_xref="GeneID:10268237" /translation="MAATKLNVLCGVDEAWCVTMQRAFEARMGVEISMVRKSTGEILD QIRAERAHPTVDVWWGGTGDTHLQAGSEGLLEEYQPAHQQDLLPWAQNFNAMSGSKSA GIYAGALGFAYNSELLAKNSLPAPTCWKDLAKEIYRGHIQTGNPNYSGTAFTMLATLV QLFGEEEAFSFMGKLNQNVVSYTKVGSAPVKAAARGEVLIGISFMHDAVTQKIEGFPL VIVAPCEGTGYEIGAVSIVKGNHNDALAQAFVEFALTPEGQATGAKAGQNQVPSNARA TLPLTAPDISMIKMVDYDFATFGQPEERSRLLSRFDNEIHPTQ" misc_feature complement(2463687..2464574) /gene="afuA2" /locus_tag="AGROH133_08621" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" gene 2464894..2465634 /gene="drrA" /locus_tag="AGROH133_08622" /db_xref="GeneID:10268238" CDS 2464894..2465634 /gene="drrA" /locus_tag="AGROH133_08622" /note="Response regulator receiver domain; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /codon_start=1 /transl_table=11 /product="two component response regulator" /protein_id="YP_004279758.1" /db_xref="GI:325293894" /db_xref="GeneID:10268238" /translation="MLNQKVRILIVEDDPDMAELISDLVEAEGWLPTCARSAEEADEI LAKDVMQLVLVDHNLPGTSGRTFAQRLRSKVDIGIVMVTAAGSAADRVLGLETAADDY VVKPFEPIELTARIKAVLRRTIPSLKQEKDSERDHGRAALLLSDWAIDLNARQAVCLT DRSRTLTSAEFALLEILAETPNQPVSRSQILDRLGSESDRYIDRNVDVLVLRLRRKIE RNPDLPRHIKTRRGRGYVLHTDEGELSP" misc_feature 2464912..2465616 /gene="drrA" /locus_tag="AGROH133_08622" /note="Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745" /db_xref="CDD:31088" misc_feature 2464918..2465253 /gene="drrA" /locus_tag="AGROH133_08622" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature order(2464927..2464932,2465059..2465061,2465083..2465085, 2465140..2465142,2465197..2465199,2465206..2465211) /gene="drrA" /locus_tag="AGROH133_08622" /note="active site" /db_xref="CDD:29071" misc_feature 2465059..2465061 /gene="drrA" /locus_tag="AGROH133_08622" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature order(2465068..2465073,2465077..2465085) /gene="drrA" /locus_tag="AGROH133_08622" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature 2465206..2465214 /gene="drrA" /locus_tag="AGROH133_08622" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature 2465317..2465604 /gene="drrA" /locus_tag="AGROH133_08622" /note="Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase...; Region: trans_reg_C; cd00383" /db_xref="CDD:29475" misc_feature order(2465392..2465394,2465449..2465454,2465506..2465508, 2465515..2465517,2465539..2465544,2465578..2465580, 2465593..2465595) /gene="drrA" /locus_tag="AGROH133_08622" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:29475" gene 2465631..2467745 /locus_tag="AGROH133_08623" /db_xref="GeneID:10268239" CDS 2465631..2467745 /locus_tag="AGROH133_08623" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transduction histidine kinase" /codon_start=1 /transl_table=11 /product="two component sensor kinase" /protein_id="YP_004279759.1" /db_xref="GI:325293895" /db_xref="GeneID:10268239" /translation="MISRSFLSSIAFRLPFAIVFICILVFSLSAIAIYGLQRARDEMA AYGLQAFSSLAKASLVSRQVSDLVSSAPFLMNAASPYRVSSESRSVVQQVDILLEMTG PGNGDRVARGFANERIVELLELIRTQTLDLAKDADAAQGHKAEAAAALGEIATGRGIT DPELRRRMNGIVQAASASDSLFQLGELRRRYVAETTARQEGYPGERLPVAELQPYERV FEAQSRYLLEMFAIRASVSRLHIVSRDLSHVTETQSDAVARSLNEDLISTSDALSRLL VIVAVASLLVLVMATFSIRSVMRVSRGIATLSNGMNALAKGEKDVGPPSYTGSETELI RLLDAFRAFHDSVDRVSRLRRTAEAAARTIRSTFRNMNEGIALFDPTGRPITMNRRII ELVGRSGSSRKLPLRRFVEPIPEINPALFPFESGRGELMDRAVVRHRTGDQRVIEISM SRQPDGGIVLLARDVTSLDRQEAEAAKAQRLDGIMRMTHQVSHEVGNMIGIITGSLGL LERETGFNDRQKRHIARIRKAADRGRSLASSMLTIGSQQPIHPSCINVANLLRGMADI LEIAVGPKCRIALEIDEDLPSVALDPALLEQSILNLCLNAAAAMPDGGLISISAASEK DTLLIAVTDEGVGMTPEAVDKAFEPYFTTRQEHGGAGLGLAMVYGFVRQSGGEAHISS MPGDGARVQLTFPVGADHVQIR" misc_feature <2466738..2467724 /locus_tag="AGROH133_08623" /note="sensory histidine kinase AtoS; Provisional; Region: PRK11360" /db_xref="CDD:183098" misc_feature 2467086..2467259 /locus_tag="AGROH133_08623" /note="Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-...; Region: HisKA; cd00082" /db_xref="CDD:119399" misc_feature order(2467089..2467091,2467101..2467103,2467113..2467115, 2467122..2467124,2467134..2467136,2467143..2467145, 2467194..2467196,2467206..2467208,2467215..2467217, 2467227..2467229,2467236..2467238,2467248..2467250) /locus_tag="AGROH133_08623" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119399" misc_feature 2467107..2467109 /locus_tag="AGROH133_08623" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:119399" misc_feature 2467413..2467712 /locus_tag="AGROH133_08623" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature order(2467431..2467433,2467443..2467445,2467521..2467523, 2467527..2467529,2467533..2467535,2467539..2467544, 2467611..2467622,2467668..2467670,2467674..2467676, 2467689..2467694,2467698..2467700) /locus_tag="AGROH133_08623" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature 2467443..2467445 /locus_tag="AGROH133_08623" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature order(2467533..2467535,2467539..2467541,2467611..2467613, 2467617..2467619) /locus_tag="AGROH133_08623" /note="G-X-G motif; other site" /db_xref="CDD:28956" gene 2467885..2469612 /locus_tag="AGROH133_08627" /db_xref="GeneID:10268240" CDS 2467885..2469612 /locus_tag="AGROH133_08627" /note="Bacterial chemotaxis sensory transducer" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004279760.1" /db_xref="GI:325293896" /db_xref="GeneID:10268240" /translation="MKNQPKAEASDPQAYLTARLATAQSRIEKTFLEGGSVLVSVMDI LNQLITILDRMTGSMDGDTADAAMANMQKTIEDMVRLPETEQLRQAAFVEMSSLCKSA NGHVDDIRETIRYLKTFAVTVKITGAGIAEFSSFAEEIRERIHFGGTEVGKFAQYLDL MDKQLARARDVSSVIGADFEATIPGIVGGLKTNSGRIGEQHRAMTAMAAKVKSVAQGV QGKIAATLSSLQIGDITRQRVEHVQTTLALFSDYLNSEEAQALNSAEMDALYDTVFEM VSAQIDEMATTFQQDCRKIFAGISSFADDAATILSLRDTLVEDAANDGGSALQLLEKD IAKACDLAGRVQEGMADANAVVASVTGTAQDLLHGIEVLRSIKTEIHYMALNSNLRCS KLGDEGRSVNVVSGELRVFADKLESPADSIVADLHRIESVITNLKTAENRSAGDLREP LNEALEAISHAKGQMETGLQDLATEGQAVFSRISAAVIKLDFESELGDVLKECHHVAS GLAAGGAGDISGFAEKIQPFSARIYKIYTMAQERDVHLRYLPVDLAPGQKAPATVEDD DDLFADALF" misc_feature <2468683..>2469156 /locus_tag="AGROH133_08627" /note="methyl-accepting chemotaxis protein II; Provisional; Region: PRK15048" /db_xref="CDD:185008" gene complement(2469671..2470372) /gene="parA" /locus_tag="AGROH133_08628" /db_xref="GeneID:10268241" CDS complement(2469671..2470372) /gene="parA" /locus_tag="AGROH133_08628" /note="Cobyrinic acid a,c-diamide synthase; ATPases involved in chromosome partitioning" /codon_start=1 /transl_table=11 /product="chromosome partitioning protein" /protein_id="YP_004279761.1" /db_xref="GI:325293897" /db_xref="GeneID:10268241" /translation="MPVITFANTKGGAGKTTAVLLLASELARRGSRVCVIDTDPQRWI SRWREKADARVDFSVITYVTAATLQQHVIDSRRAFDHVIIDLPGAQSPLLATAIGLSN HVLIPVQGSTMDAQGGAQVLELLRYLDEKANIRIDHSVVLTRVNPLVTTRALLAAREL LAQRNVRVLDTPIFERSAFRDMFEFDGCLHMMKAGHVSNLDKALQNAEAFAAEVLRLL EASSKKSPGKLMQAA" misc_feature complement(2469713..2470372) /gene="parA" /locus_tag="AGROH133_08628" /note="ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192" /db_xref="CDD:31385" misc_feature complement(2469944..2470366) /gene="parA" /locus_tag="AGROH133_08628" /note="ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following...; Region: ParA; cd02042" /db_xref="CDD:73302" misc_feature complement(2470325..2470345) /gene="parA" /locus_tag="AGROH133_08628" /note="P-loop; other site" /db_xref="CDD:73302" misc_feature complement(order(2470118..2470120,2470325..2470327)) /gene="parA" /locus_tag="AGROH133_08628" /note="Magnesium ion binding site [ion binding]; other site" /db_xref="CDD:73302" gene complement(2470491..2471579) /gene="cheB2" /locus_tag="AGROH133_08629" /db_xref="GeneID:10268242" CDS complement(2470491..2471579) /gene="cheB2" /locus_tag="AGROH133_08629" /EC_number="3.1.1.61" /note="Chemotaxis response regulator, CheB type; Chemotaxis response regulator containing a CheY- like receiver domain and a methylesterase domain" /codon_start=1 /transl_table=11 /product="protein-glutamate methylesterase" /protein_id="YP_004279762.1" /db_xref="GI:325293898" /db_xref="GeneID:10268242" /translation="MSKKIRVLIVDDSASVRQTLTEVLESDPGIEVIGAAADPFVAAK RIQEEIPDVITLDVEMPRMDGITFLRKIMSQKPIPVVMCSSLTEAGSETLLQALEAGA VDIILKPRIGAADHLAEQATRICEVVKSAAHARVGTARAALRVAAASGPQAKLTADAV LPPPSGKAMARTTEMVVCVGASTGGTEALRAMLMKLPANSPGIVIVQHMPEKFTAAFA KRLNSLCDVEIKEAEDGDPVLRGHVLIAPGDRHMLLERQGARYRVSVRTGPLVSRHRP SVDVLFRSSARAAGANAMGIIMTGMGDDGARGMLEMHQAGAFTVAQDEASSVVFGMPK EAIAHGGVDKVLPLDRIALEIQAEDRRR" misc_feature complement(2470506..2471576) /gene="cheB2" /locus_tag="AGROH133_08629" /note="chemotaxis-specific methylesterase; Provisional; Region: PRK00742" /db_xref="CDD:179106" misc_feature complement(2471253..2471558) /gene="cheB2" /locus_tag="AGROH133_08629" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2471253..2471258,2471265..2471267, 2471328..2471330,2471385..2471387,2471409..2471411, 2471544..2471549)) /gene="cheB2" /locus_tag="AGROH133_08629" /note="active site" /db_xref="CDD:29071" misc_feature complement(2471409..2471411) /gene="cheB2" /locus_tag="AGROH133_08629" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2471385..2471393,2471397..2471402)) /gene="cheB2" /locus_tag="AGROH133_08629" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2471253..2471258) /gene="cheB2" /locus_tag="AGROH133_08629" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2470509..2471054) /gene="cheB2" /locus_tag="AGROH133_08629" /note="CheB methylesterase; Region: CheB_methylest; pfam01339" /db_xref="CDD:144802" gene complement(2471592..2472461) /gene="cheR2" /locus_tag="AGROH133_08630" /db_xref="GeneID:10268243" CDS complement(2471592..2472461) /gene="cheR2" /locus_tag="AGROH133_08630" /EC_number="2.1.1.80" /note="CheR methyltransferase, SAM binding domain; methylase of chemotaxis methyl-accepting proteins" /codon_start=1 /transl_table=11 /product="chemotaxis protein methyltransferase CheR" /protein_id="YP_004279763.1" /db_xref="GI:325293899" /db_xref="GeneID:10268243" /translation="MRRALPVDASIAASSAHDGLSQRDFRLLAEYIYNYSGIKMPDSK RTMLEGRLRKRLRATGHATFAQYCNFLFREDGLEEEAIYLIDVVTTNKTDFFREPNHF DYMEKFALPALAGEGHGRIRAWSSACSTGAEPYTMAMVLAEAAEKQVINNFSILATDL STDVLRKAHSGIYARELLEPVPADMMRKYVMRSVDAGRREVRIVPRLRSKIGFARLNL MDPTYQIGDAVHLLFCRNVLIYFDKKTQVHVLTQLCKRLVPGGYLFIGHSETITGIDL PLRQVANTVFKKQ" misc_feature complement(2472231..2472401) /gene="cheR2" /locus_tag="AGROH133_08630" /note="CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705" /db_xref="CDD:112515" misc_feature complement(2471595..2472398) /gene="cheR2" /locus_tag="AGROH133_08630" /note="Methyltransferase, chemotaxis proteins; Region: MeTrc; smart00138" /db_xref="CDD:128443" misc_feature complement(2471601..2472191) /gene="cheR2" /locus_tag="AGROH133_08630" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cl12011" /db_xref="CDD:196296" gene complement(2472458..2472952) /gene="cheW2" /locus_tag="AGROH133_08631" /db_xref="GeneID:10268244" CDS complement(2472458..2472952) /gene="cheW2" /locus_tag="AGROH133_08631" /note="CheW-like protein; Chemotaxis signal transduction protein" /codon_start=1 /transl_table=11 /product="Chemotaxis protein cheW" /protein_id="YP_004279764.1" /db_xref="GI:325293900" /db_xref="GeneID:10268244" /translation="MTSTSSEGQFVTFSLGEEVFAVSVAVVREILDYEDTFKIPHSPE YLLGLRDVRGQGVPIIDLRLRLGMSRSVRTPHTRVLVLDIPFPSRTLAIGLVADKVFE VTPFRRDQMETAPDIGVHWNSDYIAGVVRREGDFVVIIDLAKLFSNEENAIARQGGTP VQAA" misc_feature complement(2472503..2472928) /gene="cheW2" /locus_tag="AGROH133_08631" /note="CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732" /db_xref="CDD:29682" misc_feature complement(order(2472503..2472526,2472683..2472685, 2472701..2472703,2472785..2472802)) /gene="cheW2" /locus_tag="AGROH133_08631" /note="putative CheA interaction surface; other site" /db_xref="CDD:29682" gene complement(2472955..2474772) /gene="mcpB" /locus_tag="AGROH133_08632" /db_xref="GeneID:10268245" CDS complement(2472955..2474772) /gene="mcpB" /locus_tag="AGROH133_08632" /note="Bacterial chemotaxis sensory transducer, methyl-accepting chemotaxis protein (MCP) signaling domain" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="YP_004279765.1" /db_xref="GI:325293901" /db_xref="GeneID:10268245" /translation="MRFTIKMKLAVAFGFLILMLAGTAGYGIYSLGIAKNAMDDVVDG TVVRLDKVHQMNALALATVRSQKNIILAASPEETQLFKAAGNESRDQLTAMLNDMAAT ASAETRAFWTDLQAITKAFEASDDHVRELVAQGNTSLAASYSSGKGRDAANALTGKLG EGVKMNRDRLEESKQLAADDYEQTRTLLVSASVVAVLIAIATAFWIALGISSGLRKIM TVAEAVAIGDLDQNVEIKTNDEIKDLVARINTMTGNLRNTAGIADRIADGDLTVMPKP LSDRDTLGLALERMVERLRGIVADALSASDNVSSGSQELSASSEQLSQGATEQASSAE EASASMEEMAANIKQNADNAAQTEKIARQSSKDAEASGEAVNRAVVAMRTIAEKISIV QEIARQTDLLALNAAVEAARAGEHGKGFAVVASEVRKLAERSQAAASEISSLSGETVQ VATEAGDMLNRLVPDIRKTAELVAEISAACREQDIGASQINEAIQQLDKVTQQNSGAS EEMSATSEELAAQAEELQSSIAFFKVDTSSVSSRPAQAAHRPAAKPAATRPAMKPAPV RKPQTGNTVSAQQARVKGFALDMSMGGPDADDADFRESA" misc_feature complement(2474236..2474769) /gene="mcpB" /locus_tag="AGROH133_08632" /note="Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_2; pfam12729" /db_xref="CDD:193205" misc_feature complement(2474002..>2474163) /gene="mcpB" /locus_tag="AGROH133_08632" /note="Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The...; Region: HAMP; cl01054" /db_xref="CDD:194021" misc_feature complement(2473243..2473710) /gene="mcpB" /locus_tag="AGROH133_08632" /note="Taxis toward Aspartate and Related amino acids and Homologs (TarH). The Tar chemoreceptor of Escherichia coli mediates attractant responses to aspartate, maltose, and phenol, repellent responses to Ni2+ and Co2+, and thermoresponses. These...; Region: TarH; cl00144" /db_xref="CDD:193677" gene complement(2474774..2475319) /gene="cheW3" /locus_tag="AGROH133_08636" /db_xref="GeneID:10268246" CDS complement(2474774..2475319) /gene="cheW3" /locus_tag="AGROH133_08636" /note="CheW-like protein; Chemotaxis signal transduction protein" /codon_start=1 /transl_table=11 /product="chemotaxis protein cheW" /protein_id="YP_004279766.1" /db_xref="GI:325293902" /db_xref="GeneID:10268246" /translation="MNQSLLKQTDEFWGVSEAVEVLTFNIAGETFAIEAVKVREILDL LPETAVPGAKAFVASVINFRGKVIPLADIRLAFGMEATERTIDSRIVVIELPFDGEPA LIGIRTDKVNEVTTFSRAASEPPPSVGMRWRADYIHCLIKRGSEFVILPNLTAIFTGH RESGPVSSGARGNVIELSKEH" misc_feature complement(2474846..2475262) /gene="cheW3" /locus_tag="AGROH133_08636" /note="CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732" /db_xref="CDD:29682" misc_feature complement(order(2474846..2474860,2475017..2475019, 2475035..2475037,2475119..2475136)) /gene="cheW3" /locus_tag="AGROH133_08636" /note="putative CheA interaction surface; other site" /db_xref="CDD:29682" gene complement(2475316..2477283) /gene="cheA2" /locus_tag="AGROH133_08637" /db_xref="GeneID:10268247" CDS complement(2475316..2477283) /gene="cheA2" /locus_tag="AGROH133_08637" /EC_number="2.7.3.-" /note="Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Chemotaxis protein histidine kinase and related kinases" /codon_start=1 /transl_table=11 /product="chemotaxis protein histidine kinase" /protein_id="YP_004279767.1" /db_xref="GI:325293903" /db_xref="GeneID:10268247" /translation="MTTLDPIQVFRTEAAELFEQIEGGLLDLLHDLTDQDQIDAVFRG LHTLKGSGAMFGFEALAAFTHHCETAFDRVRKGEVPATSELVAAVLEAQDHMQALVDN PHGVQGDVGEQLLAKLRAAVGTRGDGGVLTHVPAQNLARKQAKAKAATWEIRFRLPVN AMANGTNPLGLLDELAELGDCEIVADTSTVPSLDALNPSDLHLGWTVRLTTEQPQSAI DDVFIFVMDDMEIDIRAIEAVVEEELPVSEILPEARKVAADPKGGKAAENVRVPAERL DELMDRVGELVIAQSRLSQLAGSSVDILLRSVSEDVERLSGELRDTMMVLRMVPIAQL FGRFRRLIHDLARETGKQIELETEGEGTEVDKAVIERLADPLVHLVRNSCDHGLEKSD ERVAAGKPATGRITLIARQSGGDVTITIRDDGRGIDRQRVRAKAEASGLLAPNAQVSD QELLQMIFQPGFSTASEVTSLSGRGVGMDVVKKSVEALRGTISVTSTPGAGSEVSLAI PLTLAIIDGLLVRVGNGCYVIPLPAVEECLELSPDDDIRSRGRSFISLRESLVPFIRL RELFNTGTKPDQFQKIVVISTGSERVGLVVDQIIGDHQTVIKAMSKLHHDVATFSGAT ILGDGNVALILDVAHLVMAGQQQEARLRAAG" misc_feature complement(2476981..2477265) /gene="cheA2" /locus_tag="AGROH133_08637" /note="Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088" /db_xref="CDD:28972" misc_feature complement(2475334..2477262) /gene="cheA2" /locus_tag="AGROH133_08637" /note="Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]; Region: CheA; COG0643" /db_xref="CDD:30988" misc_feature complement(order(2477080..2477082,2477089..2477091, 2477134..2477139,2477146..2477148)) /gene="cheA2" /locus_tag="AGROH133_08637" /note="putative binding surface; other site" /db_xref="CDD:28972" misc_feature complement(2477146..2477148) /gene="cheA2" /locus_tag="AGROH133_08637" /note="active site" /db_xref="CDD:28972" misc_feature complement(2476312..2476479) /gene="cheA2" /locus_tag="AGROH133_08637" /note="Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895" /db_xref="CDD:190468" misc_feature complement(2475760..2476170) /gene="cheA2" /locus_tag="AGROH133_08637" /note="Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075" /db_xref="CDD:28956" misc_feature complement(order(2475772..2475774,2475778..2475783, 2475796..2475798,2475802..2475804,2475850..2475861, 2475961..2475966,2475970..2475972,2475976..2475978, 2475982..2475984,2476129..2476131,2476138..2476140, 2476150..2476152)) /gene="cheA2" /locus_tag="AGROH133_08637" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:28956" misc_feature complement(2476138..2476140) /gene="cheA2" /locus_tag="AGROH133_08637" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28956" misc_feature complement(order(2475853..2475855,2475859..2475861, 2475964..2475966,2475970..2475972)) /gene="cheA2" /locus_tag="AGROH133_08637" /note="G-X-G motif; other site" /db_xref="CDD:28956" misc_feature complement(2475364..2475750) /gene="cheA2" /locus_tag="AGROH133_08637" /note="CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731" /db_xref="CDD:29681" gene complement(2477280..2477648) /gene="cheY3" /locus_tag="AGROH133_08638" /db_xref="GeneID:10268248" CDS complement(2477280..2477648) /gene="cheY3" /locus_tag="AGROH133_08638" /note="Response regulator receiver domain; FOG: CheY-like receiver" /codon_start=1 /transl_table=11 /product="chemotaxis receiver protein" /protein_id="YP_004279768.1" /db_xref="GI:325293904" /db_xref="GeneID:10268248" /translation="MSAHILTVDDSASIRMTTKIALTGAGYQITEAVDGQDGLAKAKA ANFDLIVTDLNMPNMNGLEMIEALRQSPAHTGIPIIFLTTESDADMKARAKAAGATGW LTKPFDAEHLVKIVRKVLGK" misc_feature complement(2477298..2477636) /gene="cheY3" /locus_tag="AGROH133_08638" /note="Response regulator receiver domain; Region: Response_reg; pfam00072" /db_xref="CDD:143854" misc_feature complement(2477289..2477633) /gene="cheY3" /locus_tag="AGROH133_08638" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2477331..2477336,2477343..2477345, 2477400..2477402,2477466..2477468,2477490..2477492, 2477619..2477624)) /gene="cheY3" /locus_tag="AGROH133_08638" /note="active site" /db_xref="CDD:29071" misc_feature complement(2477490..2477492) /gene="cheY3" /locus_tag="AGROH133_08638" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2477466..2477474,2477478..2477483)) /gene="cheY3" /locus_tag="AGROH133_08638" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2477328..2477336) /gene="cheY3" /locus_tag="AGROH133_08638" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" gene complement(2477645..2477971) /locus_tag="AGROH133_08639" /db_xref="GeneID:10268249" CDS complement(2477645..2477971) /locus_tag="AGROH133_08639" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004279769.1" /db_xref="GI:325293905" /db_xref="GeneID:10268249" /translation="MFDETTNDTLKMPQALSIRSIAPAHGLLLDRLKDTDRLVVEVPK DADADLSFVQLMEASRNFAAQNNKTITLKEPADGQVLQTLRRGGFLSRMDEASRQFWL HGKDIS" gene complement(2477964..2479097) /gene="rpfG" /locus_tag="AGROH133_08640" /db_xref="GeneID:10268250" CDS complement(2477964..2479097) /gene="rpfG" /locus_tag="AGROH133_08640" /note="CheY-like; Response regulator containing a CheY-like receiver domain and an HD-GYP domain" /codon_start=1 /transl_table=11 /product="Metal dependent phosphohydrolase with a response regulator receiver protein" /protein_id="YP_004279770.1" /db_xref="GI:325293906" /db_xref="GeneID:10268250" /translation="MQIVLVDDSKSILVALKATVRGLPDVGTIVGFTDPTEALEFCRN NAVDLLVVDYTMPKYNGIQLLKALNTYEHFAHVPVIMITSERGRPVLIEAIESGVTEF IHKPFDPVELKARVRNLLALRKAQRDLAGQARSLVVEVRKATRQLAAREEEIIWRLAR AIEFRDGHTGDHISRVAQISMLMAKDLGLDDEHCRMIYLAAPLHDVGKIGISDSVLLK PGRLTPDEITEMRKHVGIGVQILENGSSDLLRIAEAIAGGHHEKWDGTGYPHGLSGDG IPLEARIVAIADVFEALCSERPYKKAWSTQEAYAHVVAQSGSHFDPACVAAFQRQWTL IERLMTGHGVLEIEVPSLETPEEQPIRADGGMQAAAVRETPHV" misc_feature complement(2478081..2479097) /gene="rpfG" /locus_tag="AGROH133_08640" /note="Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]; Region: COG3437" /db_xref="CDD:33243" misc_feature complement(2478738..2479088) /gene="rpfG" /locus_tag="AGROH133_08640" /note="Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems...; Region: REC; cd00156" /db_xref="CDD:29071" misc_feature complement(order(2478780..2478785,2478792..2478794, 2478849..2478851,2478915..2478917,2478939..2478941, 2479074..2479079)) /gene="rpfG" /locus_tag="AGROH133_08640" /note="active site" /db_xref="CDD:29071" misc_feature complement(2478939..2478941) /gene="rpfG" /locus_tag="AGROH133_08640" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:29071" misc_feature complement(order(2478915..2478923,2478927..2478932)) /gene="rpfG" /locus_tag="AGROH133_08640" /note="intermolecular recognition site; other site" /db_xref="CDD:29071" misc_feature complement(2478777..2478785) /gene="rpfG" /locus_tag="AGROH133_08640" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:29071" misc_feature complement(2478186..2478599) /gene="rpfG" /locus_tag="AGROH133_08640" /note="Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077" /db_xref="CDD:28958" misc_feature complement(order(2478234..2478236,2478483..2478488, 2478582..2478584)) /gene="rpfG" /locus_tag="AGROH133_08640" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:28958" misc_feature complement(2478483..2478485) /gene="rpfG" /locus_tag="AGROH133_08640" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:28958" gene 2479508..2480872 /locus_tag="AGROH133_08641" /db_xref="GeneID:10268251" CDS 2479508..2480872 /locus_tag="AGROH133_08641" /EC_number="1.14.13.-" /note="Bacterial luciferase-like; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin- dependent oxidoreductases" /codon_start=1 /transl_table=11 /product="nitrilotriacetate monooxygenase protein, component A" /protein_id="YP_004279771.1" /db_xref="GI:325293907" /db_xref="GeneID:10268251" /translation="MSKRQDKIKLGTFVYTFGFHAAAWRHPASKVTAATDFSHMLNVA RISEAAKFDFMFLADSAAAAVGDPDALARSPTKQNRFEPLSLISALSVMTERLGLVST VSTSYYEPFNVARIFASIDQLSRGRACWNVVTSDHDETGYNFNRQGLDPHAVRYERAQ EFIDVVFGLWDSFERDALLLDRESGVYYDKAKHHTLNHVGKHFQVRGPLNIAPSEQGR PVIAQAGGSEAGMNLAARTSEIVFSLASNIESNRAFYQNVKGRMPAFGRDPNDLKVMP GIVVNVGETEAEAKAKVDFLIDSLHPDVGRLMLSEFLEADLRGVPLDQPFPMDRLPAE PKGSRKMFDQLVEFVKQGQTVGQLIRHYAERHTGNGITGTPKQIADYMEEWFETRAAD GFILMFPTLPASLEDFVRLVLPELRRRGLFREEYEGSTLRENLGLSMPANRYTAAKGD KERI" misc_feature 2479529..2480773 /locus_tag="AGROH133_08641" /note="nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2; Region: Nitrilotriacetate_monoxgenase; cd01095" /db_xref="CDD:73245" misc_feature 2479535..2480809 /locus_tag="AGROH133_08641" /note="FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; Region: FMN_nitrolo; TIGR03860" /db_xref="CDD:163572" misc_feature order(2479544..2479546,2479556..2479558,2479745..2479747, 2479904..2479906,2479970..2479972,2480189..2480194) /locus_tag="AGROH133_08641" /note="active site" /db_xref="CDD:73245" misc_feature 2479811..2479816 /locus_tag="AGROH133_08641" /note="non-prolyl cis peptide bond; other site" /db_xref="CDD:73245" gene 2480884..2481399 /locus_tag="AGROH133_08642" /db_xref="GeneID:10268252" CDS 2480884..2481399 /locus_tag="AGROH133_08642" /note="FMN-binding split barrel, related, Flavin reductase like domain; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family" /codon_start=1 /transl_table=11 /product="flavin reductase protein" /protein_id="YP_004279772.1" /db_xref="GI:325293908" /db_xref="GeneID:10268252" /translation="MVDQMKMQVPSPGADLFKSSMRNLAGAVCVITTGTGETRTGFTA TSVTALSADGPTVMVALNRGSSSWEIVEKARRFCVNVVAEGQENVAHSFSGFNGLKGA SRYDGAVWHTMASGGLALDGALASLDCELEDAIIHRSHVILIGLVRSIRTHDDARPLL YWRGEYQHIRR" misc_feature 2480944..2481393 /locus_tag="AGROH133_08642" /note="Flavin Reductases; Region: FlaRed; cl00801" /db_xref="CDD:193940" gene complement(2481423..2482349) /locus_tag="AGROH133_08643" /db_xref="GeneID:10268253" CDS complement(2481423..2482349) /locus_tag="AGROH133_08643" /note="LysR, substrate-binding; Transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator, LysR family" /protein_id="YP_004279773.1" /db_xref="GI:325293909" /db_xref="GeneID:10268253" /translation="MAMPPLHALQAFEAVGRCGTMSTAAKELGVTPSAISQQVRKLEN HLGVTLLERIGRRVELTSWGVLLHKEVAKGFSQLNHSVDVLERARSQTGIVLTALSSV VNKWIGRKIFEWQALYPEANVRIIGKDDEPSLSGGQSDFRITYGKRAEVHAHFVPLYT DWVVPACSPRLLGGRTLSAPADLLKFPLLNIEWEAHYSRPPQWSEWAQLVGATVNEKL SSLFFALSSNAIDAAVNGHGFVLAQVSMIEDELQAGTLVVPFDIRLPLPESYYLAWDR SVFDKPYGREFHMWVMTIAKKQSVASSPNRSA" misc_feature complement(2481456..2482343) /locus_tag="AGROH133_08643" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" misc_feature complement(2482167..2482334) /locus_tag="AGROH133_08643" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:193654" misc_feature complement(2481477..2482070) /locus_tag="AGROH133_08643" /note="The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398" /db_xref="CDD:196214" misc_feature complement(order(2481645..2481650,2481654..2481659, 2481675..2481692,2481969..2481989,2481993..2481995, 2482005..2482007,2482014..2482019,2482023..2482028)) /locus_tag="AGROH133_08643" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 2482473..2483513 /gene="vanA" /locus_tag="AGROH133_08645" /db_xref="GeneID:10268254" CDS 2482473..2483513 /gene="vanA" /locus_tag="AGROH133_08645" /EC_number="1.14.13.82" /note="Rieske [2Fe-2S] domain; Phenylpropionate dioxygenase and related ring- hydroxylating dioxygenases, large terminal subunit" /codon_start=1 /transl_table=11 /product="vanillate O-demethylase oxygenase subunit" /protein_id="YP_004279774.1" /db_xref="GI:325293910" /db_xref="GeneID:10268254" /translation="MFLKNAWYVATWDHEIGRDLTPVTMLGENIVLYRLQNGKLAALE DACPHRKLPLSMGRIKGDDVECGYHGLTFDCSGACTRVPGAERIPHVACVRSYPVEER YGLVWVWMGEAAKADPAEIFHVEHFGDPSWGVNRGESMTINCNYLYMTDNLLDPSHVA WVHQSSFASSACEETPLETTVKSDGVVVWRWMLDSDPAPFYAPFLQFEGKCDRKQHYE VRYPSNAIIKAIFAPSGSGGEGRELPANTFLMDSYNFMTPVDENRTKYYWFQMRNFAP DDPDVSARFATSVRGAFEEDRVVLEAVHHGIANKKTPNLDLKIDVGPLRFRRKLSQMI DSETMNVVAAAE" misc_feature 2482473..2483468 /gene="vanA" /locus_tag="AGROH133_08645" /note="Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638" /db_xref="CDD:34257" misc_feature 2482476..2482823 /gene="vanA" /locus_tag="AGROH133_08645" /note="Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1)...; Region: Rieske; cl00938" /db_xref="CDD:193980" misc_feature order(2482611..2482613,2482617..2482622,2482668..2482670, 2482674..2482679,2482683..2482685,2482689..2482691) /gene="vanA" /locus_tag="AGROH133_08645" /note="iron-sulfur cluster [ion binding]; other site" /db_xref="CDD:58538" misc_feature order(2482611..2482613,2482617..2482622,2482668..2482670, 2482677..2482679,2482683..2482685) /gene="vanA" /locus_tag="AGROH133_08645" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:58538" misc_feature 2482890..2483474 /gene="vanA" /locus_tag="AGROH133_08645" /note="C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases; Region: RHO_alpha_C_DMO-like; cd08878" /db_xref="CDD:176887" misc_feature order(2482923..2482928,2482935..2482937,2482941..2482946, 2482956..2482958,2482962..2482964,2483367..2483369, 2483376..2483381,2483388..2483393,2483409..2483423, 2483430..2483432,2483451..2483453) /gene="vanA" /locus_tag="AGROH133_08645" /note="alpha subunit interface [polypeptide binding]; other site" /db_xref="CDD:176887" misc_feature order(2482929..2482931,2482935..2482940,2482944..2482949, 2482959..2482961,2483112..2483117,2483121..2483123, 2483145..2483147,2483151..2483153,2483226..2483228, 2483232..2483234,2483325..2483327,2483334..2483339, 2483346..2483351,2483358..2483360) /gene="vanA" /locus_tag="AGROH133_08645" /note="active site" /db_xref="CDD:176887" misc_feature order(2482929..2482931,2482935..2482940,2482944..2482949, 2483112..2483114,2483121..2483123,2483145..2483147, 2483151..2483153,2483226..2483228,2483232..2483234, 2483325..2483327,2483334..2483339,2483346..2483351) /gene="vanA" /locus_tag="AGROH133_08645" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176887" misc_feature order(2482944..2482946,2482959..2482961,2483358..2483360) /gene="vanA" /locus_tag="AGROH133_08645" /note="Fe binding site [ion binding]; other site" /db_xref="CDD:176887" gene 2483653..2485614 /gene="nocP2" /locus_tag="AGROH133_08646" /db_xref="GeneID:10268255" CDS 2483653..2485614 /gene="nocP2" /locus_tag="AGROH133_08646" /EC_number="3.6.3.21" /note="ABC transporter nucleotide-binding protein/ATPase (nopaline); ABC-type histidine transport system, ATPase component" /codon_start=1 /transl_table=11 /product="nopaline ABC transporter nucleotide-binding protein/ATPase" /protein_id="YP_004279775.1" /db_xref="GI:325293911" /db_xref="GeneID:10268255" /translation="MRHIRQPELYSVDYNVLRQRFLSAARRSNAALFEYKHPLHGPGG EHLFTDVAYLGERNASKKLVILSGTHGVEGQFGSACQAEWLAANNPLPLPPDTAVVMI HLINPWGTAWSRRVNEDNVDLNRNFVDWKRAVPRNERYAPLHNAFVCAEWDGPDRDRA DQLLRDAKAALNGHAGIAAIIEAGQYDFPDGLFYGGNGPTWSNRTLNDILSTFVSGAS DVVVFDLHTGAGPYGYPALLSVAEEDHAGLEWGRKTYGHALAVVMTGNGATTDTGIAA TATGYVSAAVCKSLPESRVLPLVIECGTLEGPVVMDAVQADNWLHLFGNIESPLGQKI KKTLRTAFIPDDPEWQQNCLGTSLRYFDRALTALASVTPPASKGAPAPALVSDWPPAV PVNTKSHERPAVEVHDLHKSFGTHEVLSGVGLSADPGEVVSMIGSSGSGKSTFLRCIN LLEQPSSGTIVVDGEEIRMKGGANGRSQPADMRQVERIRARVGMVFQNFNLWPHMSVL ENIIEAPVHVLGERRQDAIDHAHQLLKKVGLSEKHAQYPGQLSGGQQQRAAIARTLAM RPKVILCDEPTSALDPELVGEVLRVIRQLAEEGNTMILVTHEMQFAREVSHKILFLHK GKVEEESTPAELFTNPRSERLRQFLSRTL" misc_feature 2483680..2484420 /gene="nocP2" /locus_tag="AGROH133_08646" /note="The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key...; Region: Peptidase_M14_like; cl11393" /db_xref="CDD:196209" misc_feature order(2483860..2483862,2483869..2483871,2483995..2483997, 2484022..2484027,2484160..2484162,2484169..2484171, 2484223..2484225) /gene="nocP2" /locus_tag="AGROH133_08646" /note="active site" /db_xref="CDD:133066" misc_feature order(2483860..2483862,2483869..2483871,2484160..2484162) /gene="nocP2" /locus_tag="AGROH133_08646" /note="Zn-binding site [ion binding]; other site" /db_xref="CDD:133066" misc_feature 2484856..2485602 /gene="nocP2" /locus_tag="AGROH133_08646" /note="ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; Region: HisP; COG4598" /db_xref="CDD:34233" misc_feature 2484862..2485533 /gene="nocP2" /locus_tag="AGROH133_08646" /note="HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP; Region: ABC_HisP_GlnQ_permeases; cd03262" /db_xref="CDD:73021" misc_feature 2484958..2484981 /gene="nocP2" /locus_tag="AGROH133_08646" /note="Walker A/P-loop; other site" /db_xref="CDD:73021" misc_feature order(2484967..2484972,2484976..2484984,2485141..2485143, 2485372..2485377,2485471..2485473) /gene="nocP2" /locus_tag="AGROH133_08646" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:73021" misc_feature 2485132..2485143 /gene="nocP2" /locus_tag="AGROH133_08646" /note="Q-loop/lid; other site" /db_xref="CDD:73021" misc_feature 2485300..2485329 /gene="nocP2" /locus_tag="AGROH133_08646" /note="ABC transporter signature motif; other site" /db_xref="CDD:73021" misc_feature 2485360..2485377 /gene="nocP2" /locus_tag="AGROH133_08646" /note="Walker B; other site" /db_xref="CDD:73021" misc_feature 2485384..2485395 /gene="nocP2" /locus_tag="AGROH133_08646" /note="D-loop; other site" /db_xref="CDD:73021" misc_feature 2485459..2485479 /gene="nocP2" /locus_tag="AGROH133_08646" /note="H-loop/switch region; other site" /db_xref="CDD:73021" gene 2485686..2486480 /gene="nocT" /locus_tag="AGROH133_08647" /db_xref="GeneID:10268256" CDS 2485686..2486480 /gene="nocT" /locus_tag="AGROH133_08647" /note="Bacterial extracellular solute-binding protein, family 3; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain" /codon_start=1 /transl_table=11 /product="nopaline ABC transporter substrate-binding protein" /protein_id="YP_004279776.1" /db_xref="GI:325293912" /db_xref="GeneID:10268256" /translation="MNLKVLSLALLLAGVSTAHAAEGELSIGTEGAYPPWSMADAAGN VTGFDADVGNLLCTKLAVKCRFVVQAFDGLIPALKAKRFDVIISGMSITQDRKKEINF SVGYAELANMFLVPKTSDLAGIKDIDTLLKGLDGKTIGVQTGTTHAHFIEKRVPNANL KTYDTLDNMQIDLASGRVEAAFADASALQDFLAKPEGKDFQFVDVKVQSKFDSTLGEG IGVGIAKENTELKTKIDKALCELVADGSIGKASQKWFKMDISRPCN" misc_feature 2485737..2486450 /gene="nocT" /locus_tag="AGROH133_08647" /note="lysine-arginine-ornithine-binding periplasmic protein; Region: 3A0103s03R; TIGR01096" /db_xref="CDD:162200" misc_feature 2485758..2486450 /gene="nocT" /locus_tag="AGROH133_08647" /note="Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and...; Region: PBPb; cd00134" /db_xref="CDD:29040" misc_feature order(2485782..2485784,2485896..2485898,2485971..248597