LOCUS NC_015066 3624 bp DNA circular BCT 08-FEB-2011 DEFINITION Bifidobacterium longum subsp. infantis 157F plasmid p157F-NC2, complete sequence. ACCESSION NC_015066 VERSION NC_015066.1 GI:322690189 DBLINK Project: 62693 KEYWORDS . SOURCE Bifidobacterium longum subsp. infantis 157F ORGANISM Bifidobacterium longum subsp. infantis 157F Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 AUTHORS Fukuda,S., Toh,H., Hase,K., Oshima,K., Nakanishi,Y., Yoshimura,K., Tobe,T., Clarke,J.M., Topping,D.L., Suzuki,T., Taylor,T.D., Itoh,K., Kikuchi,J., Morita,H., Hattori,M. and Ohno,H. TITLE Bifidobacteria can protect from enteropathogenic infection through production of acetate JOURNAL Nature 469 (7331), 543-547 (2011) PUBMED 21270894 REFERENCE 2 (bases 1 to 3624) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-FEB-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3624) AUTHORS Hattori,M., Toh,H., Oshima,K., Itoh,K. and Ohno,H. TITLE Direct Submission JOURNAL Submitted (02-OCT-2008) Contact:Masahira Hattori University of Tokyo, Graduate School of Frontier Sciences; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan URL :http://www.cb.k.u-tokyo.ac.jp/hattorilab/ COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AP010892. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3624 /organism="Bifidobacterium longum subsp. infantis 157F" /mol_type="genomic DNA" /strain="157F" /sub_species="infantis" /db_xref="taxon:565040" /plasmid="p157F-NC2" gene 1..1701 /locus_tag="BLIF_P2-0001" /db_xref="GeneID:10208766" CDS 1..1701 /locus_tag="BLIF_P2-0001" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="YP_004219761.1" /db_xref="GI:322690190" /db_xref="GeneID:10208766" /translation="MAIYHLSVSNVSRASGSRATATLSYITGKRVHDERRGETYDYGR KERVLRVGTLLPEGASAEFADPAVLFNAVELHETGRTARPAKKIVVALPREFTPRQRV QALEEYIRENLNADGYAATYAIHEDREGNNPHAHILVANRQIDPATGGWARLKQRMEY VLDERGERVPLIDPETGRQKTDKRGRRQWKRMSVSLNPLDRKAKLKALRESWAKTCNA RLDETARIDHRSLEDQGSDLEPTIHEGYAARAIERAGGVSERCEANREIRRSNGLLTA IRTELGRIFDRLGELFAAKIRQLRQRQARPEPAREPNWRYFEGDARRQLEADRADHTA AIRGKLMGAKADVRNREEWWRSHGTEEFEAAKQIIDVARAASRGARDANVFKRGRLLR NAEQVAGEQSEKLRGAVPWLEDTDIPSDWDQANRFRMRTTKAIHDHDMQPRTGLVDEL ERQLEQAERAEGEKPSPEQVKALALRMAEQRERAAEDPTQDMNRPEPSGDEPLDLSEP EDLGESGPFEERSAPRTKADLLREIRQRADRRTGQQEAEQRQIDPWQAQPPQRRGHGR " misc_feature 55..759 /locus_tag="BLIF_P2-0001" /note="MobA/MobL family; Region: MobA_MobL; pfam03389" /db_xref="CDD:112214" gene complement(1698..2597) /locus_tag="BLIF_P2-0002" /db_xref="GeneID:10208764" CDS complement(1698..2597) /locus_tag="BLIF_P2-0002" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="YP_004219762.1" /db_xref="GI:322690191" /db_xref="GeneID:10208764" /translation="MSNEIVKFSNQFNNVALKKFDAVHLDVLMAIASRVREKGTATVE FSFEELRGLMRLRKNLTNKQLADKIVQTNARLLALNYMFEDSGKIIQFALFTKFVTDP QEATLAVGVNEEFAFLLNDLTSQFTRFELAEFADLKSKYAKEFYRRAKQYRSSGIWKI SRDEFCRLLGVSDSTAKSTANLNRVVLKTIAEECGPLLGLKIERQYVKRRLSGFVFTF ARETPPVIDARPVEARKTDGDGKGHWTSVAGYGEVFTTTELFDVTAARDHFDGTVEAG ECRFCAFDARNREHHARNAGRLF" misc_feature complement(1944..2594) /locus_tag="BLIF_P2-0002" /note="Initiator Replication protein; Region: Rep_3; cl03080" /db_xref="CDD:186548" gene complement(2826..3338) /locus_tag="BLIF_P2-0003" /db_xref="GeneID:10208765" CDS complement(2826..3338) /locus_tag="BLIF_P2-0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004219763.1" /db_xref="GI:322690192" /db_xref="GeneID:10208765" /translation="MVKSLDEQIKSLQERQAQLKAREDDLKARRRERERKARTKRLIE VGAMAESAAGFEGGDERAKEHIARLVQLGSLVEAMCSTDVMDNYTSREDLRATVAKAL EHNVRTSDGMNWNLQDLVYEALSEEWRKRDGEDDDPWENHGPDGYQPPSYEPVNPERR TAQTPSDGLI" ORIGIN 1 atggcgatct accatctgtc cgtctccaac gtgagccgcg cgagcggttc cagggccacg 61 gccacgctct cgtacatcac cggcaagcgg gtgcatgacg agcggcgcgg cgagacctac 121 gactacgggc gcaaggagcg cgtgctgcgc gtcggcaccc tgctgccgga gggcgcgtcg 181 gccgagttcg ccgaccccgc cgtgctgttc aacgcggtcg agctgcacga gaccggacgg 241 acggcgaggc cggccaagaa gatcgtggtg gccctgccgc gcgagttcac ccccaggcag 301 cgcgtgcagg cgctggagga gtacatccgc gagaacctga acgcggacgg ctacgcggcc 361 acctacgcca tccacgagga cagggagggc aacaatccgc acgcgcacat cctcgtcgcc 421 aaccggcaga tcgacccggc cacgggcggc tgggccaggc tcaagcagcg catggagtac 481 gtgctggacg agcggggaga gcgggtgccg ctgatcgacc ccgagaccgg caggcagaag 541 accgacaagc ggggccgcag gcagtggaag cgcatgagcg tgtccctgaa cccgctcgac 601 cggaaggcca agctcaaggc cctgcgcgaa tcctgggcga agacctgtaa cgcgcggctg 661 gacgagaccg cgagaatcga ccacaggagc ctcgaggatc agggcagcga cctcgaaccc 721 accatccacg agggctacgc ggccagggcc atcgaacggg ccgggggcgt cagcgagagg 781 tgcgaggcca accgtgagat caggcgcagc aacggcctgc tgaccgccat ccgcaccgaa 841 ctcggccgga tattcgaccg cctgggcgag ctgttcgccg ccaagatcag gcagctgcgc 901 caacgccagg cgaggccgga accggccagg gagccgaact ggcgctactt cgagggcgac 961 gcgcgccgcc agctcgaagc cgacagggcc gaccacacgg cagcgatccg tggaaaactc 1021 atgggagcca aggccgacgt gaggaaccgc gaggagtggt ggaggagcca cggcaccgag 1081 gagtttgagg ccgccaagca gatcatcgac gtggcgcgag ccgcctcgcg cggggccagg 1141 gacgcgaacg tcttcaagcg cggcaggctg ctgcggaacg ccgaacaggt ggccggggag 1201 cagtccgaga agctgcgcgg ggcggtgcca tggctcgaag acaccgacat cccgagcgac 1261 tgggaccagg ccaacaggtt ccgcatgagg accaccaagg ccatccacga ccacgacatg 1321 cagccgagga ccggcctcgt ggacgaactg gagaggcagc tcgaacaggc cgagcgggcc 1381 gagggcgaga agccaagccc cgaacaggtg aaggccctcg cactgcgcat ggccgaacag 1441 cgtgaacggg cggcggagga cccgacgcag gacatgaacc gacccgagcc gtccggtgac 1501 gagccgttgg acctgagcga gcccgaggac ctgggggaga gcggcccgtt cgaggagcga 1561 agcgccccca ggaccaaggc cgacctgctc agggagatca ggcagcgcgc agacaggcgc 1621 acaggccagc aggaggccga acagcggcag atcgacccat ggcaggcgca accgccccag 1681 aggcgcggac acggccgcta gaacagcctt ccggcgttcc gcgcatgatg ttcgcggttg 1741 cgcgcgtcaa acgcgcagaa acggcattcc ccggcctcca cggtgccgtc gaagtggtca 1801 cgcgcggctg tcacgtcgaa cagctccgtg gtcgtgaaca cctcgccata ccccgccacg 1861 ctcgtccaat ggcccttgcc gtcgccgtcc gtcttcctcg cctccacggg cctggcgtcg 1921 atcaccggag gggtctcgcg ggcgaacgtg aacacgaagc ccgacagcct gcgtttcacg 1981 tactggcgct cgatcttcag gccaaggaga gggccacact cttcggcgat cgtcttcagc 2041 acgaccctgt tcaggttggc ggtggatttt gccgtggaat cggatacgcc aagcagtcgg 2101 cagaactcat cgcggctgat cttccagatt cccgagctgc ggtactgctt ggcgcgcctg 2161 tagaactcct tggcgtactt gctcttgagg tcggcgaact cggccagctc gaagcgcgtg 2221 aactggctgg tcaggtcgtt gagcaggaaa gcgaactcct cgttgacccc aaccgcgaga 2281 gtcgcctcct gcgggtcggt gacgaacttc gtgaacagcg cgaactggat gatcttgccc 2341 gaatcctcga acatgtagtt cagcgccagc agtcgcgcgt tcgtctgcac gatcttgtct 2401 gccagctgct tgttggtcag gttcttcctc aatcgcatga ggccgcgcag ctcctcgaac 2461 gagaactcca ccgtggccgt gcccttctcc ctcacccttg aggcgatcgc catgagcacg 2521 tccaggtgca cggcgtcgaa cttcttcagc gcgacgttgt tgaactggtt gctgaacttc 2581 acgatctcat tggacatgac tccatactag tacaaagttt atttatttac tagttcgctc 2641 cccttttgta ctaagttcgc tccccttttg tactaagttc gctccccttt tgtactaagt 2701 tcgctcccct tttgtactaa gtaccgtccg aaacccgttg ggagagtagg gctgcggagg 2761 gcctaaaaga atgtaaaaag attttaaaag atttaaaaag ggtgcacggc gccttttttc 2821 ggacgtcaga tcaggccatc ggagggcgtc tgggcggtcc tgcgttcggg gttgaccggc 2881 tcgtatgagg gcggctggta tccgtccggc ccgtggttct cccatgggtc gtcgtcctcg 2941 ccgtcccttt tgcgccattc ctcgctcagc gcctcgtaga cgaggtcctg gaggttccag 3001 ttcatgccat cgctggtcct gacgttgtgt tctagggcct tggcgacggt ggccctgagg 3061 tcctcgcggc tcgtgtagtt gtccatcacg tcggtggagc acatggcttc caccagggag 3121 ccgagctgca cgaggcgggc gatgtgttcc ttggccctct cgtcgcctcc ctcgaagccg 3181 gcggccgact cggccatcgc gccgacctcg atcaggcgct tggttcgggc cttgcgttcg 3241 cgttccctgc gccgcgcctt gaggtcgtcc tcgcgggcct tgagctgggc ctgcctctcc 3301 tgcagggact tgatctgctc atccaggctc ttcaccatcg aaacggctcc ttacatggtc 3361 tgcatcatcc gtatagtgat atgattctac cagcaaggaa atccctaatc aaagattagg 3421 gcgcacttac atgcaaccgg aggttgcatt ttccgtaagc gcgccctccg ggggccacgg 3481 gccttgccct ttggattccc acccttccgg gggagcctcc cggcaggccc agcgggtgct 3541 cgccgcaccc ctgggaaccc cttgccgcag ggccgccgcc ccgcaccccg ccgccctggc 3601 cgatcacgaa aggagccgaa gccg //