LOCUS NC_015053 4895 bp DNA circular BCT 08-FEB-2011 DEFINITION Bifidobacterium longum subsp. infantis 157F plasmid p157F-NC1, complete sequence. ACCESSION NC_015053 VERSION NC_015053.1 GI:322690183 DBLINK Project: 62693 KEYWORDS . SOURCE Bifidobacterium longum subsp. infantis 157F ORGANISM Bifidobacterium longum subsp. infantis 157F Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 AUTHORS Fukuda,S., Toh,H., Hase,K., Oshima,K., Nakanishi,Y., Yoshimura,K., Tobe,T., Clarke,J.M., Topping,D.L., Suzuki,T., Taylor,T.D., Itoh,K., Kikuchi,J., Morita,H., Hattori,M. and Ohno,H. TITLE Bifidobacteria can protect from enteropathogenic infection through production of acetate JOURNAL Nature 469 (7331), 543-547 (2011) PUBMED 21270894 REFERENCE 2 (bases 1 to 4895) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-FEB-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4895) AUTHORS Hattori,M., Toh,H., Oshima,K., Itoh,K. and Ohno,H. TITLE Direct Submission JOURNAL Submitted (02-OCT-2008) Contact:Masahira Hattori University of Tokyo, Graduate School of Frontier Sciences; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan URL :http://www.cb.k.u-tokyo.ac.jp/hattorilab/ COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AP010891. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4895 /organism="Bifidobacterium longum subsp. infantis 157F" /mol_type="genomic DNA" /strain="157F" /sub_species="infantis" /db_xref="taxon:565040" /plasmid="p157F-NC1" gene 1..1113 /locus_tag="BLIF_P1-0001" /db_xref="GeneID:10208762" CDS 1..1113 /locus_tag="BLIF_P1-0001" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="YP_004209917.1" /db_xref="GI:322690184" /db_xref="GeneID:10208762" /translation="MRDERTGEAFNGFGRRERVEHVCTMLPEGAPGEYLDPERLFNAV EMAEKRSDARPAKKIMVALPREFDARERFRALEDFISWNITANGYACTYAIHTDKDGR NPHAHILVANRRIDPKTGRWAAKSRSEFALDANGRRIPVIDPDTGRQKIGARNRKVWK RVNVSNNPLDSKEFLERLRREWADSCNALLPGYAVIDHRSFKARGIERIPTIHEGYAS REMEKRGGRGDLCEENRRIQALNRLLDALRAMIGRLSDQAQGILTAVKRRQRPSGAPQ APSSPEPAERPQERPQARETPPQAPQEPPKPIRTKKALTDRFKTRLDERLAENERKQA EKQAEPDMEETWDLSDPADPLNIGMGWGTGGHGLGL" misc_feature 4..672 /locus_tag="BLIF_P1-0001" /note="MobA/MobL family; Region: MobA_MobL; pfam03389" /db_xref="CDD:112214" gene complement(1177..1887) /locus_tag="BLIF_P1-0002" /db_xref="GeneID:10208758" CDS complement(1177..1887) /locus_tag="BLIF_P1-0002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004209918.1" /db_xref="GI:322690185" /db_xref="GeneID:10208758" /translation="MHDFSGMADAGGMGYPPSPLIGPWPRVFGCGAGVFKHQPFALLV CSIQGPRAIISLSDARLAYLIKGAKMLRTKHLKMAVVPMTLLALLSTAVPVASAQETT DESFYELTTTPSGGDMIVGEPGTTILFDSSNGELVDVLPPSEAEDYSVTVSRGCADSN AGCWAGGNALGDMQFAGTGTATGSWPYRNSYTTGNKSGQITFAINGVTYTPVAAGPWM RIATADGSGVDGVSVTRW" gene complement(1941..2225) /locus_tag="BLIF_P1-0003" /db_xref="GeneID:10208759" CDS complement(1941..2225) /locus_tag="BLIF_P1-0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004209919.1" /db_xref="GI:322690186" /db_xref="GeneID:10208759" /translation="MRRQRRLDAIAQTARAVTVMSAAMGSITGARQMTMTAISHIQGR PCGPLLPMRMCCAFRSGRAATGAAASPGGCRAVGFRPCYKTSIDDANRIG" gene complement(2591..3502) /locus_tag="BLIF_P1-0004" /db_xref="GeneID:10208760" CDS complement(2591..3502) /locus_tag="BLIF_P1-0004" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="YP_004209920.1" /db_xref="GI:322690187" /db_xref="GeneID:10208760" /translation="MSDEIVKYSNQFNNQALRKFTALDLDLLMAIASRVRDKGTDEVA FTFEELKRLAGLQRNMTNDEFAKQIANVNRRLLALNFEFQNEEHDIIQFALFAGFVTS PTKRTLTVSVNSRFSFLLNDLTSQFTRFELAEFTALRSSYAKECYRRLKQYRQTGVWK VSLEDFRRLLDVPKSYRPSEINKYVLKPIEEELGPLLNLKVHRKYLKKKPGRGRASLV GFEFEFDPEKVPGGAPAPRVELSGSVVTDEARKSLRDVSKTPVPDLSVPGEGPALDPD TQAFLDAHGGHGFAGAEGYVSDWPSAA" misc_feature complement(2831..3499) /locus_tag="BLIF_P1-0004" /note="Initiator Replication protein; Region: Rep_3; cl03080" /db_xref="CDD:186548" gene complement(3762..4181) /locus_tag="BLIF_P1-0005" /db_xref="GeneID:10208761" CDS complement(3762..4181) /locus_tag="BLIF_P1-0005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_004209921.1" /db_xref="GI:322690188" /db_xref="GeneID:10208761" /translation="MTRSVEEQMADIERRMKQLRARKQRIVARENAKARKRRTHLIIR LGGILSNEGVLGYDEGVWNDEGNRQRLLDMLKAHAAELRAWASDAGVRLPSAESAGEL REQVRDLPQEPQIQEQPGYGYQPGFQQPQQWQQQPWN" ORIGIN 1 atgcgcgacg agcgcaccgg cgaggcgttc aacgggttcg gccgcaggga gcgcgtcgag 61 catgtatgca cgatgctgcc cgagggcgcg cccggcgagt acctcgaccc ggagcgtttg 121 ttcaacgccg tcgagatggc cgagaaacgt tccgacgcga ggcccgcgaa gaagatcatg 181 gtcgccctgc cccgcgagtt cgacgcccgc gaacgcttcc gcgcactgga ggacttcatc 241 tcatggaaca tcacggccaa cggctacgcc tgcacgtacg ccatccacac cgacaaggac 301 ggacgtaacc cccacgcgca catcctcgtc gccaaccggc gcatcgaccc gaagaccggc 361 agatgggcgg cgaagagccg cagcgagttc gcgttggacg ccaacggccg gcgcatcccc 421 gtcatcgacc ccgacaccgg acgacagaag atcggcgcca gaaaccgcaa ggtctggaag 481 cgcgtcaacg tgagcaacaa ccccttggac tccaaggagt tcctcgaaag gctcaggcgc 541 gagtgggccg actcctgcaa cgccctgctc cccggatacg ccgtcatcga ccatcggagc 601 ttcaaggcgc ggggcatcga acgcatcccc accatccacg agggatacgc cagccgcgag 661 atggagaaac gcggcggcag gggcgacctg tgcgaggaga accggcgcat ccaggccctg 721 aaccggctcc tcgacgcgct tagggccatg atcgggcggc tctccgacca agcgcaaggc 781 atcctgacgg ccgtcaaacg ccgccaacgg ccctcaggcg cgccacaggc cccttcaagc 841 cctgaaccgg ccgaaaggcc acaggaacgc ccgcaggctc gtgaaacgcc gccacaggcc 901 ccgcaggaac ccccgaagcc catcaggacg aaaaaggcgc tcaccgacag gttcaagaca 961 cggcttgacg agcggctggc cgaaaacgaa cgcaaacagg ccgaaaaaca ggccgaaccc 1021 gacatggagg agacatggga cctctccgac cccgccgacc cgctcaacat cggcatgggc 1081 tggggcacgg gaggccacgg actcggcctg tgagaacgcc gggaacgcaa agggccggca 1141 tccgaagaca ccggcccgaa atttagaaag acatccttac cagcgggtaa cggatacgcc 1201 gtcgacgcca gagccgtctg ccgtggcgat gcgcatccac ggaccagctg cgacaggggt 1261 gtatgtaact ccattgattg cgaaggtgat ctgtcccgac ttattgccgg tcgtatagct 1321 gttgcgatac ggccaggacc ccgttgccgt tccggtgcct gcaaactgca tgtcacccaa 1381 agcgttcccg ccagcccagc atccagcatt ggaatcagcg catccacgcg agacagttac 1441 cgaataatct tcagcctcgc tcggcggcag cacgtccacc aattcgccgt tgctggaatc 1501 aaagagaatc gttgtgccag gttcgccgac aatcatgtcc ccgcccgacg gagtggtggt 1561 aagttcatag aacgactcgt cagtggtttc ttgagcagat gccaccggga ctgccgtcga 1621 caggagcgcc agcagagtca ttggaaccac tgccatcttc aaatgcttgg tacgtaacat 1681 ttttgccccc ttgattaggt atgccagacg tgcgtctgac aaggaaatta tagctcttgg 1741 accttggatt gaacagacca gtaatgcaaa gggttggtgt ttgaagacgc cggccccgca 1801 tccgaagacg cggggccacg gcccaatcaa aggggatggc gggtaaccca tcccgccggc 1861 atcggccatc cccgaaaagt catgcatgcc cgcctgatcg taagggggaa gttagcagcg 1921 cctccgccgg cgtttccatc ttagccgata cgattggcgt cgtcgatgga cgtcttgtag 1981 cagggacgaa aaccgaccgc ccggcatccg ccgggcgacg ctgccgcgcc agtcgcggcg 2041 cggcccgaac gaaaggcgca gcacatgcgc atgggtaaca aggggccgca cggccggccc 2101 tggatatggc tgatggcggt catcgtcatc tgcctcgctc ccgtgatgga tcccatcgcg 2161 gccgacatca ccgtgacggc cctggccgtc tgggcgatgg catccagccg ccgttgacgg 2221 cgcaacctgc cgcgggtcgg agcccgcggc aggccccttg ttcagaaaag agtcggctcg 2281 ataccaggct ccatccgatc atcgggcatg gcctgtgaat catggctgcg tctggccacc 2341 tcgaatggtg tcagaccatc gtgggccgcc ttatacgcat ccagttcagc cctggctcgt 2401 tccgccgcaa gttcaccacg ctcgatcttg atttgctgat ggcggtcatc gccgtctgtc 2461 tcgcaccggc ggtgcatccc atcgccgcgg acatcatcct cacggccctg gccgtctggg 2521 cgatgagaaa cagccgctaa acggcacccg gcccgtccga gcgcaagccc ggacgggctt 2581 tcacatacca tcacgcagca ctcggccagt cggagacata cccctcggca ccggcgaatc 2641 catgaccgcc gtgcgcgtcg aggaacgcct gagtatcagg gtcgagcgcc ggtccctcgc 2701 ccggcaccga cagatcgggc acgggcgtct tcgacacgtc cctgagcgac ttcctcgcct 2761 catcggtcac cacggagccg gacagctcca cgcgcggagc gggagcgccg ccgggtacct 2821 tctccgggtc aaattcaaat tcgaacccga caagggaagc gcggccacgt cccggcttct 2881 tcttcaggta cttgcgatgc accttcagat tcagcagagg ccccaactcc tcctcaatcg 2941 gcttaagaac atacttgttg atttcgctcg gccgatacga tttgggtacg tcgagcagtc 3001 ggcggaagtc ctcaaggctg accttccaca caccggtttg tcggtactgc ttgagcctcc 3061 tgtagcactc cttggcgtag ctggagcgca gggccgtgaa ctcggccagc tcgaagcggg 3121 tgaactgcga ggtgaggtcg ttaagcagga acgagaagcg cgagttcacc gatacggtga 3181 gtgtgcgttt ggtcgggctg gtgacgaagc ctgcgaacag ggcgaactgg atgatgtcgt 3241 gctcttcgtt ctggaactcg aagttgagcg cgagcaggcg acggttcaca ttggcaatct 3301 gcttggcgaa ctcatcgttg gtcatgttcc tctgaagtcc ggccagccgc ttcaattctt 3361 cgaacgtgaa cgccacctcg tccgtgccct tgtcccgcac gcgagacgcg atggccatca 3421 gcaaatcaag atcgagcgcg gtgaacttgc gcagcgcctg attgttgaac tggttcgagt 3481 acttcacgat ctcatcggac atgactgcat tctaccataa aaacgagatt tttatatttt 3541 ctacccttta ttctcccaaa acctcgtttt tattcctcaa aagcgtcctt tattctccca 3601 aaacctcccc taaataattc ccaaaacctc ccctttaatc tcccattttc tcccctttaa 3661 tagtgcgttt cccctactgc cgtaaggcct gcggggagtc taaaagagta caaaagattc 3721 tataaaaagg ggctccgccc cgatgaagag aagaaaccga ctcagttcca aggctgctgc 3781 tgccattgct gtggctgttg gaatccgggc tggtagccat agcccggctg ctcctgtatc 3841 tgaggctctt ggggcaggtc acgaacctgt tcccgcagct cacccgccga ctcagcgctg 3901 gggagcctca cgcccgcgtc agaggcccat gcgcgcagtt cggcggcatg ggccttgagc 3961 atgtccagca gcctttgccg gttgccctcg tcgttccaga cgccctcgtc gtagccaagc 4021 acgccctcgt tggagaggat gccgcccagc cggatgatca gatgggtgcg ccgcttgcgc 4081 gccttggcgt tctccctagc cacgatgcgc tgtttgcgcg ccctgagctg cttcatccgg 4141 cgctcgatgt cggccatctg ctcctcgacg ctcctggtca tcggttcctc cctgcgttcc 4201 gtcggttatc aatcaggacg ctagacccca cggcagcacg gcacggggca cggcgtctac 4261 acaccaaacc taaacccgga agaacggagc cggtttggac atccaagccg cgagggcgaa 4321 gcgttcatca atgccgaacg tgccgccccc gccgatttcc gcgcgcatga cggccacggg 4381 agggaaacac cgaccggaaa agcctcttcg caagctgcgg cagcttgcga agagcagccg 4441 agaggatcag ccttgccgca gtctcaggaa actccccgta aatcaatccc atgaatcgcc 4501 aagcccattg cataagagca tcagaaaatt cgtccatgca ccgctctatg cgtcgaccga 4561 cacgccggta acggaaccat ccccgcaagg tcaggtggaa gtccctcaat ttcattgagg 4621 gcgcacttac atgttaccgg tggtaacatt cagcgtaagc gcgctctccc gaggggccac 4681 tccgtggggg ccaagcgtgc gccgcttgga tccgcgcccc gtcccggcgg ggtgccggcc 4741 acctccccgg tggagggcca acgggcctcc cggccctttg gattcccgga aaggagtaca 4801 gtcccgtggc gatctactcg ttgcacgtgt cgaacgtgag ccgtgccgcc ggctccagcg 4861 ccgtcgcctc ctgctcgtac atcacctcgc gtcgg //